Citrus Sinensis ID: 019713
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 337 | 2.2.26 [Sep-21-2011] | |||||||
| O48902 | 437 | Malate dehydrogenase [NAD | N/A | no | 0.899 | 0.693 | 0.827 | 1e-144 | |
| P21528 | 441 | Malate dehydrogenase [NAD | N/A | no | 0.881 | 0.673 | 0.829 | 1e-142 | |
| Q05145 | 441 | Malate dehydrogenase [NAD | N/A | no | 0.919 | 0.702 | 0.771 | 1e-137 | |
| P17606 | 429 | Malate dehydrogenase [NAD | N/A | no | 0.795 | 0.624 | 0.824 | 1e-130 | |
| P46489 | 453 | Malate dehydrogenase [NAD | N/A | no | 0.780 | 0.580 | 0.801 | 1e-129 | |
| P37229 | 432 | Malate dehydrogenase [NAD | N/A | no | 0.813 | 0.634 | 0.794 | 1e-129 | |
| P52426 | 435 | Malate dehydrogenase [NAD | N/A | no | 0.902 | 0.698 | 0.721 | 1e-127 | |
| P15719 | 432 | Malate dehydrogenase [NAD | N/A | no | 0.839 | 0.655 | 0.773 | 1e-127 | |
| B2UKY5 | 329 | Malate dehydrogenase OS=A | yes | no | 0.664 | 0.680 | 0.562 | 4e-70 | |
| Q6MAA3 | 330 | Malate dehydrogenase OS=P | yes | no | 0.655 | 0.669 | 0.583 | 5e-70 |
| >sp|O48902|MDHP_MEDSA Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 510 bits (1313), Expect = e-144, Method: Compositional matrix adjust.
Identities = 254/307 (82%), Positives = 272/307 (88%), Gaps = 4/307 (1%)
Query: 13 TETTRLSSSQLSLSSTHLSSLRRRAFRPIIGPRNPTISCSV--NQVQAPVAVEQDDPKSK 70
++T SSSQLS S L P+ ++ ISCSV NQVQAP AV+ DPKSK
Sbjct: 11 SKTQLHSSSQLSFLSRTLPRHHHCTLAPLHRTQHARISCSVAPNQVQAP-AVQTQDPKSK 69
Query: 71 TNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIAL 130
DCYGVFCLTYDLKAEEETKSWKK++ IAVSGAAGMI+NHLLFKLA+GEV GP+QPIAL
Sbjct: 70 P-DCYGVFCLTYDLKAEEETKSWKKLITIAVSGAAGMISNHLLFKLASGEVFGPNQPIAL 128
Query: 131 KLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMER 190
KLLGSERSLQALEGVAMELEDSLFPLLREV I I+PYE+F+DAEWALLIGAKPRGPGMER
Sbjct: 129 KLLGSERSLQALEGVAMELEDSLFPLLREVVISIDPYEVFQDAEWALLIGAKPRGPGMER 188
Query: 191 AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRL 250
A LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP+IPAKNFHALTRL
Sbjct: 189 AALLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRL 248
Query: 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEG 310
DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI+GLPVKE+IKDHKWLEE
Sbjct: 249 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIDGLPVKEVIKDHKWLEEE 308
Query: 311 FTETIQK 317
FTE +QK
Sbjct: 309 FTEKVQK 315
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The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Medicago sativa (taxid: 3879) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 2 |
| >sp|P21528|MDHP_PEA Malate dehydrogenase [NADP], chloroplastic OS=Pisum sativum PE=1 SV=2 | Back alignment and function description |
|---|
Score = 503 bits (1296), Expect = e-142, Method: Compositional matrix adjust.
Identities = 253/305 (82%), Positives = 271/305 (88%), Gaps = 8/305 (2%)
Query: 19 SSSQLS-LSSTHLSSLRRR---AFRPIIGPRNPTISCSV--NQVQAPVAVEQDDPKSKTN 72
SSSQLS LS T +L R F P+ ++ ISCSV NQVQ P A QD PK K
Sbjct: 17 SSSQLSFLSRTRTRTLPRHYHSTFAPLHRTQHARISCSVAPNQVQVPAAQTQD-PKGKP- 74
Query: 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132
DCYGVFCLTYDLKAEEETKSWKK++NIAVSGAAGMI+NHLLFKLA+GEV GPDQPIALKL
Sbjct: 75 DCYGVFCLTYDLKAEEETKSWKKLINIAVSGAAGMISNHLLFKLASGEVFGPDQPIALKL 134
Query: 133 LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAG 192
LGSERS+QALEGVAMELEDSLFPLLREV I I+PYE+F+DAEWALLIGAKPRGPG+ERA
Sbjct: 135 LGSERSIQALEGVAMELEDSLFPLLREVVISIDPYEVFQDAEWALLIGAKPRGPGVERAA 194
Query: 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDE 252
LLDINGQIFAEQGKALNAVASRN KVIVVGNPCNTNALICLKNAP+IPAKNFHALTRLDE
Sbjct: 195 LLDINGQIFAEQGKALNAVASRNAKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDE 254
Query: 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFT 312
NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI+GLPVKE+IKD+KWLEE FT
Sbjct: 255 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIDGLPVKEVIKDNKWLEEEFT 314
Query: 313 ETIQK 317
E +QK
Sbjct: 315 EKVQK 319
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The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|Q05145|MDHP_MESCR Malate dehydrogenase [NADP], chloroplastic OS=Mesembryanthemum crystallinum GN=MDH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 487 bits (1253), Expect = e-137, Method: Compositional matrix adjust.
Identities = 247/320 (77%), Positives = 268/320 (83%), Gaps = 10/320 (3%)
Query: 4 VAQLSPSSYTETTRLSSSQLSLSSTHLSSLRRRAFRPIIGPRNPT----ISCSV--NQVQ 57
VA+LSPS T+L + Q SS R F + PR + I CSV NQVQ
Sbjct: 3 VAELSPSY---KTQLKTCQQLSSSLSTRLSDHRKFSLRLLPRPVSVRGGIRCSVAPNQVQ 59
Query: 58 APVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLA 117
APVAV + K +CYG+FCLTYDLKAEEETK+WKKM+ IAVSGAAGMI+NHLLFKLA
Sbjct: 60 APVAVPAEGQTGKP-ECYGIFCLTYDLKAEEETKTWKKMITIAVSGAAGMISNHLLFKLA 118
Query: 118 AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177
+GEV GPDQPIALKLLGSERS ALEGVAMELEDSL+PLLR V IGI+PY++F+DAEWAL
Sbjct: 119 SGEVFGPDQPIALKLLGSERSFNALEGVAMELEDSLYPLLRAVSIGIDPYDIFQDAEWAL 178
Query: 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP 237
LIGAKPRGPGMERA LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP
Sbjct: 179 LIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP 238
Query: 238 SIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV 297
+IPAKNFH LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNA+I+GLPV
Sbjct: 239 NIPAKNFHGLTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAKIDGLPV 298
Query: 298 KEIIKDHKWLEEGFTETIQK 317
K +IKDHKWLEE FT IQK
Sbjct: 299 KTVIKDHKWLEEEFTVMIQK 318
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The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Mesembryanthemum crystallinum (taxid: 3544) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|P17606|MDHP1_SORBI Malate dehydrogenase [NADP] 1, chloroplastic OS=Sorghum bicolor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 465 bits (1197), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/273 (82%), Positives = 246/273 (90%), Gaps = 5/273 (1%)
Query: 48 TISCSVN---QVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGA 104
T+ CSV+ QVQ VA + K DC+GVFC TYDLKAE++TKSWKK+VNIAVSGA
Sbjct: 37 TVRCSVDAAKQVQDGVATAEAPATRK--DCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGA 94
Query: 105 AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI 164
AGMI+NHLLFKLA+GEV G DQPIALKLLGSERS QALEGVAMELEDSL+PLLREV IGI
Sbjct: 95 AGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGI 154
Query: 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224
+PYE+FED +WALLIGAKPRGPGMERA LLDINGQIFA+QGKALNAVAS+NVKV+VVGNP
Sbjct: 155 DPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP 214
Query: 225 CNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV 284
CNTNALICLKNAP IPAKNFHALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQV
Sbjct: 215 CNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQV 274
Query: 285 PDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
PDFLNA+I+G PVKE+IKD KWLEE FT T+QK
Sbjct: 275 PDFLNAKIDGRPVKEVIKDTKWLEEEFTITVQK 307
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The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Sorghum bicolor (taxid: 4558) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|P46489|MDHP_FLABI Malate dehydrogenase [NADP], chloroplastic OS=Flaveria bidentis PE=1 SV=1 | Back alignment and function description |
|---|
Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust.
Identities = 218/272 (80%), Positives = 246/272 (90%), Gaps = 9/272 (3%)
Query: 48 TISCSV---NQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGA 104
+I CSV +Q+QAP+ P + +C+GVFCLTYDLKAEEETKSWKK++N+AVSGA
Sbjct: 65 SIRCSVTSSDQIQAPL------PAKQKPECFGVFCLTYDLKAEEETKSWKKIINVAVSGA 118
Query: 105 AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI 164
AGMI+NHLLFKLA+GEV GPDQPI+LKLLGSERS ALEGVAMELEDSL+PLLR+V IGI
Sbjct: 119 AGMISNHLLFKLASGEVFGPDQPISLKLLGSERSFAALEGVAMELEDSLYPLLRQVSIGI 178
Query: 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224
+PYE+F+DAEWALLIGAKPRGPGMERA LLDINGQIFAEQGKALNAVAS NVKV+VVGNP
Sbjct: 179 DPYEIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNP 238
Query: 225 CNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV 284
CNTNALICLKNAP+IP KNFHALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQV
Sbjct: 239 CNTNALICLKNAPNIPPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQV 298
Query: 285 PDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
PDFLNA+I+G+PV E+I+D KWLE+ FT +Q
Sbjct: 299 PDFLNAKIHGIPVTEVIRDRKWLEDEFTNMVQ 330
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The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Flaveria bidentis (taxid: 4224) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|P37229|MDHP2_SORBI Malate dehydrogenase [NADP] 2, chloroplastic OS=Sorghum bicolor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 459 bits (1182), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/278 (79%), Positives = 243/278 (87%), Gaps = 4/278 (1%)
Query: 44 PRNPTISCSV----NQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNI 99
PR T+ CSV QVQ VA + N+C+GVFC YDLKAE++TKSWKK+V I
Sbjct: 33 PRLATVRCSVVDAAKQVQDGVATAVGGGAASGNECFGVFCNIYDLKAEDKTKSWKKLVTI 92
Query: 100 AVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLRE 159
AVSGAAGMI+NHLLFKLA+GEV G DQPIALKLLGSERS QALEGV MELEDSL+PLLRE
Sbjct: 93 AVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVRMELEDSLYPLLRE 152
Query: 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVI 219
V IGI PYE+F+D +WALLIGAKPRGPGMERA LLDINGQIFA+QGKALNAVASRNVKV+
Sbjct: 153 VSIGIGPYEVFQDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASRNVKVL 212
Query: 220 VVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNH 279
VVGNPCNTNALICLKN P+IPAKNFHALTRLDENRAKCQ+ALKAGVFYDKVSN+TIWGNH
Sbjct: 213 VVGNPCNTNALICLKNTPNIPAKNFHALTRLDENRAKCQIALKAGVFYDKVSNVTIWGNH 272
Query: 280 STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
STTQVPDFLNA+I+G PVKEII+D KWLEE FT T+QK
Sbjct: 273 STTQVPDFLNAKIDGRPVKEIIQDTKWLEEEFTMTVQK 310
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Sorghum bicolor (taxid: 4558) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|P52426|MDHP_SPIOL Malate dehydrogenase [NADP], chloroplastic OS=Spinacia oleracea GN=MDH PE=1 SV=1 | Back alignment and function description |
|---|
Score = 456 bits (1173), Expect = e-127, Method: Compositional matrix adjust.
Identities = 231/320 (72%), Positives = 259/320 (80%), Gaps = 16/320 (5%)
Query: 4 VAQLSPSSYTETTRLSSSQLSLSSTHLSSLRRRAFRPIIG----PRNPTISCSV--NQVQ 57
VA+LSP T+ + HLS L ++G R I CS+ NQVQ
Sbjct: 3 VAELSPCYQTQIVK---------PPHLSWLSNNHKLNLLGLPKASRITEICCSLAPNQVQ 53
Query: 58 APVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLA 117
PVAV +S +CYGVFC TYDLK EEET+SWKKM+ IA+SGAAG I+NHLLFKLA
Sbjct: 54 TPVAVPTG-AQSIKPECYGVFCWTYDLKKEEETRSWKKMITIAISGAAGTISNHLLFKLA 112
Query: 118 AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177
+G V GPDQPIALKLLGSE+S ALEGVAMELEDSL+PLLREV IGI+PYE+FEDAEWAL
Sbjct: 113 SGVVFGPDQPIALKLLGSEKSFHALEGVAMELEDSLYPLLREVSIGIDPYEVFEDAEWAL 172
Query: 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP 237
LIGAKPRGPGMERA LLDING+I+AEQGKALNAVAS NVKVIVVGNPCNTNALICLKN P
Sbjct: 173 LIGAKPRGPGMERADLLDINGKIYAEQGKALNAVASPNVKVIVVGNPCNTNALICLKNPP 232
Query: 238 SIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV 297
+IPAKNFH+LTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDF+NA+I G+PV
Sbjct: 233 NIPAKNFHSLTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFVNAQIGGVPV 292
Query: 298 KEIIKDHKWLEEGFTETIQK 317
KE+IK KWLEE FTE ++K
Sbjct: 293 KEVIKAQKWLEEEFTEKVRK 312
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|P15719|MDHP_MAIZE Malate dehydrogenase [NADP], chloroplastic OS=Zea mays PE=1 SV=1 | Back alignment and function description |
|---|
Score = 455 bits (1171), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/291 (77%), Positives = 254/291 (87%), Gaps = 8/291 (2%)
Query: 34 RRRAFRPIIGPRNP--TISCSVN---QVQAPVA--VEQDDPKSKTNDCYGVFCLTYDLKA 86
R R+ +P R P T+ CSV+ Q Q VA V + P S+ +C+GVFC TYDLKA
Sbjct: 21 RCRSAQPRRPRRAPLATVRCSVDATKQAQDGVATAVATEAPASR-KECFGVFCTTYDLKA 79
Query: 87 EEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA 146
E++TKSW+K+VN+AVSGAAGMI+NHLLFKLA+GEV G DQPIALKLLGSERS QALEGVA
Sbjct: 80 EDKTKSWRKLVNVAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVA 139
Query: 147 MELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGK 206
MELEDSL+PLLREV IGI+PY +F+D +WALLIGAKPRGPGMERA LLDINGQIFA+QGK
Sbjct: 140 MELEDSLYPLLREVSIGIDPYVVFQDVDWALLIGAKPRGPGMERAALLDINGQIFADQGK 199
Query: 207 ALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVF 266
ALNAVASRN +V+VVGNPCNTNALICLKNAP+IPAKNFHALTRLDENRAKCQLALKAGVF
Sbjct: 200 ALNAVASRNDEVLVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVF 259
Query: 267 YDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
YDKVSN+TIWGNHSTTQVPDFLNA+I+G PVKE+IKD KWLEE FT T+QK
Sbjct: 260 YDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKDTKWLEEEFTLTVQK 310
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Zea mays (taxid: 4577) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|B2UKY5|MDH_AKKM8 Malate dehydrogenase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=mdh PE=3 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (677), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 126/224 (56%), Positives = 163/224 (72%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K + + V+GAAG IA LLF++A+G +LGPDQPI L+LL ++ ALEGV MEL D+
Sbjct: 2 KTPITVTVTGAAGQIAYSLLFRIASGSMLGPDQPINLRLLEIPPAMNALEGVVMELRDAA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPL+ E+ +P E F A W LL+G+ PR GMER LLDING++F QG+A+ A+
Sbjct: 62 FPLVNEIVPTSDPDEAFAGANWCLLVGSVPRKAGMERKDLLDINGKVFIGQGQAIARSAA 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++V+V+VVGNPCNTNALI + NA +P+ F A+TRLDENRAK QLA KAGV +V+NM
Sbjct: 122 KDVRVLVVGNPCNTNALIAMHNASGVPSDRFFAMTRLDENRAKSQLAEKAGVHVTEVTNM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
IWGNHS+TQ PDF NARI G PV E+IKD +WL+ F T+Q+
Sbjct: 182 AIWGNHSSTQYPDFTNARIGGKPVTEVIKDTEWLKGDFITTVQQ 225
|
Catalyzes the reversible oxidation of malate to oxaloacetate. Akkermansia muciniphila (strain ATCC BAA-835) (taxid: 349741) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|Q6MAA3|MDH_PARUW Malate dehydrogenase OS=Protochlamydia amoebophila (strain UWE25) GN=mdh PE=3 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (676), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 129/221 (58%), Positives = 164/221 (74%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ IA+SG AG IA LLF+LA+GE+ GP+Q I L++L +L ALEGV ME+ED FPL
Sbjct: 5 IKIAISGGAGQIAYSLLFRLASGELFGPNQLIELQVLEVPNALSALEGVKMEIEDCAFPL 64
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L +KI +PY+ FED ++ALLIGAK RGPGMER LL N +IF QG+ALNAVA +
Sbjct: 65 LSSIKICSDPYQAFEDIDYALLIGAKSRGPGMERRDLLQENSKIFVNQGQALNAVAKSSA 124
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
K+ VVGNPCNTN LI L NAPS+ +NF+A+TRLD+NRA L+ K+ V VS +TIW
Sbjct: 125 KIFVVGNPCNTNCLIALNNAPSLKRENFYAMTRLDQNRATFFLSQKSQVSTKDVSCVTIW 184
Query: 277 GNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
GNHS TQVPDF+NA+I+ PV+ II D +WLE+ F E++QK
Sbjct: 185 GNHSATQVPDFVNAKISQKPVETIIPDRQWLEKDFIESVQK 225
|
Catalyzes the reversible oxidation of malate to oxaloacetate. Protochlamydia amoebophila (strain UWE25) (taxid: 264201) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 337 | ||||||
| TAIR|locus:2161188 | 443 | AT5G58330 [Arabidopsis thalian | 0.807 | 0.613 | 0.849 | 6.3e-124 | |
| UNIPROTKB|P0A5J6 | 329 | mdh "Malate dehydrogenase" [My | 0.655 | 0.671 | 0.556 | 2.1e-61 | |
| TIGR_CMR|CBU_1241 | 328 | CBU_1241 "malate dehydrogenase | 0.661 | 0.679 | 0.556 | 3.1e-60 | |
| DICTYBASE|DDB_G0280255 | 333 | mdhC "malate dehydrogenase" [D | 0.661 | 0.669 | 0.480 | 1.2e-51 | |
| UNIPROTKB|Q5ZME2 | 334 | MDH1 "Malate dehydrogenase, cy | 0.652 | 0.658 | 0.513 | 1.2e-51 | |
| DICTYBASE|DDB_G0292600 | 348 | mdhB "malate dehydrogenase" [D | 0.664 | 0.643 | 0.471 | 1.5e-51 | |
| FB|FBgn0262782 | 337 | Mdh1 "Malate dehydrogenase 1" | 0.655 | 0.655 | 0.511 | 6.5e-51 | |
| ZFIN|ZDB-GENE-040204-1 | 333 | mdh1a "malate dehydrogenase 1a | 0.652 | 0.660 | 0.5 | 8.3e-51 | |
| DICTYBASE|DDB_G0290207 | 391 | mdhA "malate dehydrogenase" [D | 0.652 | 0.562 | 0.488 | 1.3e-50 | |
| UNIPROTKB|P11708 | 334 | MDH1 "Malate dehydrogenase, cy | 0.649 | 0.655 | 0.497 | 5.8e-50 |
| TAIR|locus:2161188 AT5G58330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1218 (433.8 bits), Expect = 6.3e-124, P = 6.3e-124
Identities = 232/273 (84%), Positives = 252/273 (92%)
Query: 46 NPTISCSVNQ-VQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGA 104
N ISCSV+Q QAPVAV+++ +CYGVFCLTYDLKAEEET+SWKK++NIAVSGA
Sbjct: 48 NSKISCSVSQNSQAPVAVQENGLVKTKKECYGVFCLTYDLKAEEETRSWKKLINIAVSGA 107
Query: 105 AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI 164
AGMI+NHLLFKLA+GEV GPDQPIALKLLGSERS+QALEGVAMELEDSLFPLLREV IG
Sbjct: 108 AGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSLFPLLREVDIGT 167
Query: 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224
+P E+F+D EWA+LIGAKPRGPGMERA LLDINGQIFAEQGKALN AS NVKV+VVGNP
Sbjct: 168 DPNEVFQDVEWAILIGAKPRGPGMERADLLDINGQIFAEQGKALNKAASPNVKVLVVGNP 227
Query: 225 CNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV 284
CNTNALICLKNAP+IPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV
Sbjct: 228 CNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV 287
Query: 285 PDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
PDFLNARINGLPVKE+I DHKWLEEGFTE++QK
Sbjct: 288 PDFLNARINGLPVKEVITDHKWLEEGFTESVQK 320
|
|
| UNIPROTKB|P0A5J6 mdh "Malate dehydrogenase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 123/221 (55%), Positives = 155/221 (70%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ +AV+GAAG I LLF+LA+G +LGPD+PI L+LL E +LQALEGV MEL+D FPL
Sbjct: 6 LKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPL 65
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L V+IG +P ++F+ ALL+GA+PRG GMER+ LL+ NG IF QGKALNAVA+ +V
Sbjct: 66 LSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADDV 125
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
+V V GNP NTNALI + NAP IP + F ALTRLD NRA QLA K G + MTIW
Sbjct: 126 RVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIW 185
Query: 277 GNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
GNHS TQ PD +A + G E++ D W+E+ F T+ K
Sbjct: 186 GNHSATQYPDLFHAEVAGKNAAEVVNDQAWIEDEFIPTVAK 226
|
|
| TIGR_CMR|CBU_1241 CBU_1241 "malate dehydrogenase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 124/223 (55%), Positives = 152/223 (68%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
K V +AV+GAAG I LLF+LA+G+ G D + L LL E +L AL+GV MELED F
Sbjct: 3 KHVKVAVTGAAGQIGYALLFRLASGQAFGLDTTVDLHLLEIEPALPALKGVVMELEDCAF 62
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
PLLR + + +P F D WALL+GA PR GMER LL+ NG IFA QGKA+N A+
Sbjct: 63 PLLRNMVVTSDPRVAFNDVNWALLVGAAPRKAGMERKDLLEKNGSIFAGQGKAINENAAS 122
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
+V++ VVGNPCNTN LI + NAP IP F+A+TRLD+NRA QLALKAGV V NM
Sbjct: 123 DVRIFVVGNPCNTNCLIAMNNAPDIPKDRFYAMTRLDQNRAIGQLALKAGVDVPSVKNMI 182
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
IWGNHS+TQ PDF +A I+G P E+I+D WL F IQ+
Sbjct: 183 IWGNHSSTQYPDFYHATIDGKPATEVIRDKNWLLNDFISVIQQ 225
|
|
| DICTYBASE|DDB_G0280255 mdhC "malate dehydrogenase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 109/227 (48%), Positives = 147/227 (64%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
+++N+ ++GAAG IA L+F + G++ G DQ I L LL + + +L+G+ ME++D +
Sbjct: 4 EVINVLITGAAGQIAYSLIFNVCKGDMFGLDQRIKLHLLDIPQMVDSLKGIVMEIQDGAY 63
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
PL+ + I + E F +A+L+GA PR GMERA LL N IF QGKAL A++
Sbjct: 64 PLIADTVITADVKEAFTGVHYAILVGAMPRREGMERADLLKANAAIFKVQGKALAEHANK 123
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
NVKV+VVGNP NTNALI +A IP +NF LTRLD+NRAK Q+ALKAGV V N+
Sbjct: 124 NVKVLVVGNPANTNALIAQVSANGIPKENFTCLTRLDQNRAKSQIALKAGVNVKDVHNVI 183
Query: 275 IWGNHSTTQVPDF----LNARINGLPVKEIIKDHKWLEEGFTETIQK 317
IWGNHS+TQ PD+ +N P+ IKD KWL+ F T+QK
Sbjct: 184 IWGNHSSTQYPDYRCGYINLSTGKTPISTAIKDEKWLQGEFISTVQK 230
|
|
| UNIPROTKB|Q5ZME2 MDH1 "Malate dehydrogenase, cytoplasmic" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 116/226 (51%), Positives = 150/226 (66%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ +A G+V G +QP+ L LL + LEGV MEL+D PL
Sbjct: 5 IRVLVTGAAGQIAYSLLYSIAKGDVFGKEQPLVLVLLDITPMMTVLEGVVMELQDCALPL 64
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
LREV I + E+ F+D + A+L+G+ PR GMER LL N +IF QG AL+ A +
Sbjct: 65 LREV-IPTDKEEVAFKDLDIAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKT 123
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKV+VVGNP NTN LI K+APSIP +NF LTRLD NRAK Q+ALK GV + V N+ I
Sbjct: 124 VKVVVVGNPANTNCLIASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTSNDVKNVII 183
Query: 276 WGNHSTTQVPDFLNARIN--G--LPVKEIIKDHKWLEEGFTETIQK 317
WGNHS+TQ PD +A++N G + V E IKD WL+ F T+Q+
Sbjct: 184 WGNHSSTQYPDVNHAKVNVKGKEVGVYEAIKDDSWLKGDFILTVQQ 229
|
|
| DICTYBASE|DDB_G0292600 mdhB "malate dehydrogenase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 106/225 (47%), Positives = 148/225 (65%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +A++GA+G I LLF++A+G++LG DQPI L+ L ++ +L+GV+MEL+D
Sbjct: 22 KAPVRVAITGASGQIGYQLLFRIASGDMLGKDQPIILQCLELPGAMNSLKGVSMELDDCA 81
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL+ + P E F A++ALL+GA+PR GMER LL N +IF+ QGKAL+ A+
Sbjct: 82 FPLLKGIVQSDKPEEAFAGADYALLVGARPRSKGMERGDLLKANAEIFSVQGKALDKSAN 141
Query: 214 RN-VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSN 272
R+ ++V+VVGNP NTNALI +NAP+I K F A+TRLD NR QLA K G +
Sbjct: 142 RDTLRVLVVGNPANTNALIAARNAPNIDPKRFSAMTRLDHNRGLAQLADKTGSAVTDIEK 201
Query: 273 MTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
IWGNHS TQ PD + G + + I D KW+++ F T+Q+
Sbjct: 202 FCIWGNHSATQYPDINFGTVKGKSLVDTINDQKWVKDNFIPTVQQ 246
|
|
| FB|FBgn0262782 Mdh1 "Malate dehydrogenase 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 115/225 (51%), Positives = 144/225 (64%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ +A GEV G DQPI L LL + LEGV MEL D PL
Sbjct: 5 IRVVVTGAAGQIAYSLLYMIARGEVFGKDQPIVLHLLDIPPMVGVLEGVVMELADCALPL 64
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L EV +P F+D A L+GA PR GMER LL N +IF QG+AL+ A ++V
Sbjct: 65 LVEVVPTTDPAVGFKDVSAAFLVGAMPRKEGMERKDLLSANVKIFRTQGQALDKFAKKDV 124
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
KV+VVGNP NTNAL+C APSIP +NF A+TRLD+NRA Q+A K GV V N+ IW
Sbjct: 125 KVLVVGNPANTNALVCSSYAPSIPRENFSAMTRLDQNRATSQIAAKLGVPISAVKNIIIW 184
Query: 277 GNHSTTQVPDFLNARI--NGL--PVKEIIKDHKWLEEGFTETIQK 317
GNHS+TQ PD A++ NG V + I D+ +L+ F ET+QK
Sbjct: 185 GNHSSTQYPDAGQAKVTANGTVKSVVDAINDNGYLQGSFVETVQK 229
|
|
| ZFIN|ZDB-GENE-040204-1 mdh1a "malate dehydrogenase 1a, NAD (soluble)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 113/226 (50%), Positives = 147/226 (65%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ +A G+V G DQPI L LL L L+GV MEL+D PL
Sbjct: 5 IRVLVTGAAGQIAYSLLYSIAKGDVFGKDQPIILVLLDITPMLPVLDGVVMELQDCALPL 64
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
LREV I + E+ F+D + A+L+G+ PR GMER LL N IF QG+AL A +
Sbjct: 65 LREV-IPTDKVEVGFKDLDAAILVGSMPRKEGMERKDLLKANVAIFKTQGEALEKYAKKT 123
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKV+VVGNP NTN LI K+APSIP +NF LTRLD NRA+ Q+A++ GV D V N+TI
Sbjct: 124 VKVLVVGNPANTNCLIASKSAPSIPKENFSCLTRLDHNRARSQVAMRVGVPSDSVKNVTI 183
Query: 276 WGNHSTTQVPDFLNARI--NGLPVK--EIIKDHKWLEEGFTETIQK 317
WGNHS+TQ PD +A + NG + + + D WL+ F T+Q+
Sbjct: 184 WGNHSSTQYPDVHHAIVTRNGKEIAAFDAVNDESWLKGDFISTVQQ 229
|
|
| DICTYBASE|DDB_G0290207 mdhA "malate dehydrogenase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 111/227 (48%), Positives = 141/227 (62%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA L+F +A+G++ GP QP+ L LL + AL+GV MEL+D +PL
Sbjct: 62 IKVLVTGAAGQIAYSLMFMIASGQMFGPHQPVILHLLDIPKMADALKGVVMELQDCSYPL 121
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L+ V + F A+L+GA PRGPGM+R LL +N IF EQG+ALN ASR V
Sbjct: 122 LQSVVATTDIQTAFLHINVAILVGAFPRGPGMQRKDLLKVNVSIFKEQGEALNKYASRGV 181
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
KV+VVGNP NTNAL L A +P NF ALTRLD+NRA+ ++ K G D V N+ IW
Sbjct: 182 KVLVVGNPANTNALTALMKASDLPTSNFSALTRLDQNRAQSMISEKVGTNVDNVHNVIIW 241
Query: 277 GNHSTTQVPD-----FLNARINGL--PVKEIIKDHKWLEEGFTETIQ 316
GNHS TQVPD LN GL P+ + D KWL E F +Q
Sbjct: 242 GNHSQTQVPDVNHGYILNYPNRGLIEPIPSSVNDDKWLNEQFIPLVQ 288
|
|
| UNIPROTKB|P11708 MDH1 "Malate dehydrogenase, cytoplasmic" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 113/227 (49%), Positives = 147/227 (64%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 5 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 64
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
L++V I + E+ F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++
Sbjct: 65 LKDV-IATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 123
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKVIVVGNP NTN L K+APSIP +NF LTRLD NRAK Q+ALK GV D V N+ I
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 183
Query: 276 WGNHSTTQVPDFLNARINGLPVKEI-----IKDHKWLEEGFTETIQK 317
WGNHS+TQ PD +A++ L KE+ +KD WL+ F T+Q+
Sbjct: 184 WGNHSSTQYPDVNHAKVK-LQAKEVGVYEAVKDDSWLKGEFITTVQQ 229
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A9BVK0 | MDH_DELAS | 1, ., 1, ., 1, ., 3, 7 | 0.5575 | 0.6646 | 0.6829 | yes | no |
| B6IZN7 | MDH_COXB2 | 1, ., 1, ., 1, ., 3, 7 | 0.5560 | 0.6617 | 0.6798 | yes | no |
| O48902 | MDHP_MEDSA | 1, ., 1, ., 1, ., 8, 2 | 0.8273 | 0.8991 | 0.6933 | N/A | no |
| A1KI28 | MDH_MYCBP | 1, ., 1, ., 1, ., 3, 7 | 0.5565 | 0.6557 | 0.6717 | yes | no |
| P52426 | MDHP_SPIOL | 1, ., 1, ., 1, ., 8, 2 | 0.7218 | 0.9020 | 0.6988 | N/A | no |
| Q7W5Q8 | MDH_BORPA | 1, ., 1, ., 1, ., 3, 7 | 0.5309 | 0.6646 | 0.6808 | yes | no |
| A1VRQ1 | MDH_POLNA | 1, ., 1, ., 1, ., 3, 7 | 0.5353 | 0.6646 | 0.6829 | yes | no |
| B0VQX5 | MDH_ACIBS | 1, ., 1, ., 1, ., 3, 7 | 0.5353 | 0.6646 | 0.6829 | yes | no |
| Q21XH1 | MDH1_RHOFD | 1, ., 1, ., 1, ., 3, 7 | 0.5530 | 0.6646 | 0.6829 | yes | no |
| B0SF41 | MDH_LEPBA | 1, ., 1, ., 1, ., 3, 7 | 0.5426 | 0.6617 | 0.6819 | yes | no |
| B2GKC8 | MDH_KOCRD | 1, ., 1, ., 1, ., 3, 7 | 0.5158 | 0.6528 | 0.6707 | yes | no |
| B9MBP0 | MDH_ACIET | 1, ., 1, ., 1, ., 3, 7 | 0.5486 | 0.6646 | 0.6829 | yes | no |
| B1Y8A3 | MDH_LEPCP | 1, ., 1, ., 1, ., 3, 7 | 0.5398 | 0.6646 | 0.6829 | yes | no |
| Q5SKV7 | MDH_THET8 | 1, ., 1, ., 1, ., 3, 7 | 0.5357 | 0.6617 | 0.6819 | yes | no |
| A2SHT9 | MDH_METPP | 1, ., 1, ., 1, ., 3, 7 | 0.5442 | 0.6646 | 0.6829 | yes | no |
| P61977 | MDH_THET2 | 1, ., 1, ., 1, ., 3, 7 | 0.5357 | 0.6617 | 0.6819 | yes | no |
| A5U1T8 | MDH_MYCTA | 1, ., 1, ., 1, ., 3, 7 | 0.5565 | 0.6557 | 0.6717 | yes | no |
| P50917 | MDH_MYCLE | 1, ., 1, ., 1, ., 3, 7 | 0.5475 | 0.6557 | 0.6717 | yes | no |
| Q04RS5 | MDH_LEPBJ | 1, ., 1, ., 1, ., 3, 7 | 0.5112 | 0.6617 | 0.6840 | yes | no |
| Q126N9 | MDH_POLSJ | 1, ., 1, ., 1, ., 3, 7 | 0.5398 | 0.6646 | 0.6829 | yes | no |
| P0A5J6 | MDH_MYCTU | 1, ., 1, ., 1, ., 3, 7 | 0.5565 | 0.6557 | 0.6717 | yes | no |
| A9KFT9 | MDH_COXBN | 1, ., 1, ., 1, ., 3, 7 | 0.5470 | 0.6617 | 0.6798 | yes | no |
| A1TP96 | MDH_ACIAC | 1, ., 1, ., 1, ., 3, 7 | 0.5486 | 0.6646 | 0.6829 | yes | no |
| B2HRH5 | MDH_MYCMM | 1, ., 1, ., 1, ., 3, 7 | 0.5565 | 0.6557 | 0.6717 | yes | no |
| P0A5J7 | MDH_MYCBO | 1, ., 1, ., 1, ., 3, 7 | 0.5565 | 0.6557 | 0.6717 | yes | no |
| P21528 | MDHP_PEA | 1, ., 1, ., 1, ., 8, 2 | 0.8295 | 0.8813 | 0.6734 | N/A | no |
| Q051U6 | MDH_LEPBL | 1, ., 1, ., 1, ., 3, 7 | 0.5112 | 0.6617 | 0.6840 | yes | no |
| Q5YTI1 | MDH_NOCFA | 1, ., 1, ., 1, ., 3, 7 | 0.5248 | 0.6528 | 0.6586 | yes | no |
| A9IIS3 | MDH_BORPD | 1, ., 1, ., 1, ., 3, 7 | 0.5309 | 0.6646 | 0.6808 | yes | no |
| P37229 | MDHP2_SORBI | 1, ., 1, ., 1, ., 8, 2 | 0.7949 | 0.8130 | 0.6342 | N/A | no |
| Q05145 | MDHP_MESCR | 1, ., 1, ., 1, ., 8, 2 | 0.7718 | 0.9198 | 0.7029 | N/A | no |
| Q83C87 | MDH_COXBU | 1, ., 1, ., 1, ., 3, 7 | 0.5560 | 0.6617 | 0.6798 | yes | no |
| P10584 | MDH_THETH | 1, ., 1, ., 1, ., 3, 7 | 0.5357 | 0.6617 | 0.6819 | yes | no |
| B2UKY5 | MDH_AKKM8 | 1, ., 1, ., 1, ., 3, 7 | 0.5625 | 0.6646 | 0.6808 | yes | no |
| Q6MAA3 | MDH_PARUW | 1, ., 1, ., 1, ., 3, 7 | 0.5837 | 0.6557 | 0.6696 | yes | no |
| B0SN74 | MDH_LEPBP | 1, ., 1, ., 1, ., 3, 7 | 0.5426 | 0.6617 | 0.6819 | yes | no |
| P15719 | MDHP_MAIZE | 1, ., 1, ., 1, ., 8, 2 | 0.7731 | 0.8397 | 0.6550 | N/A | no |
| B6J7Q0 | MDH_COXB1 | 1, ., 1, ., 1, ., 3, 7 | 0.5560 | 0.6617 | 0.6798 | yes | no |
| A9NDV1 | MDH_COXBR | 1, ., 1, ., 1, ., 3, 7 | 0.5560 | 0.6617 | 0.6798 | yes | no |
| P17606 | MDHP1_SORBI | 1, ., 1, ., 1, ., 8, 2 | 0.8241 | 0.7952 | 0.6247 | N/A | no |
| Q2L068 | MDH_BORA1 | 1, ., 1, ., 1, ., 3, 7 | 0.5353 | 0.6646 | 0.6808 | yes | no |
| A1W9K7 | MDH_ACISJ | 1, ., 1, ., 1, ., 3, 7 | 0.5486 | 0.6646 | 0.6829 | yes | no |
| Q7WD94 | MDH_BORBR | 1, ., 1, ., 1, ., 3, 7 | 0.5309 | 0.6646 | 0.6808 | yes | no |
| A0PVV1 | MDH_MYCUA | 1, ., 1, ., 1, ., 3, 7 | 0.5565 | 0.6557 | 0.6717 | yes | no |
| Q7VW97 | MDH_BORPE | 1, ., 1, ., 1, ., 3, 7 | 0.5309 | 0.6646 | 0.6808 | yes | no |
| C5CSI5 | MDH_VARPS | 1, ., 1, ., 1, ., 3, 7 | 0.5309 | 0.6646 | 0.6829 | yes | no |
| C1AMN4 | MDH_MYCBT | 1, ., 1, ., 1, ., 3, 7 | 0.5565 | 0.6557 | 0.6717 | yes | no |
| A0QCI6 | MDH_MYCA1 | 1, ., 1, ., 1, ., 3, 7 | 0.5520 | 0.6557 | 0.6717 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.963 |
| 3rd Layer | 1.1.1.37 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 337 | |||
| PLN00112 | 444 | PLN00112, PLN00112, malate dehydrogenase (NADP); P | 0.0 | |
| TIGR01757 | 387 | TIGR01757, Malate-DH_plant, malate dehydrogenase, | 1e-167 | |
| cd01338 | 322 | cd01338, MDH_choloroplast_like, Chloroplast-like m | 1e-149 | |
| TIGR01759 | 323 | TIGR01759, MalateDH-SF1, malate dehydrogenase | 1e-130 | |
| PRK05442 | 326 | PRK05442, PRK05442, malate dehydrogenase; Provisio | 1e-130 | |
| cd00704 | 323 | cd00704, MDH, Malate dehydrogenase | 1e-119 | |
| cd01336 | 325 | cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an | 1e-106 | |
| TIGR01758 | 324 | TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD- | 5e-80 | |
| PLN00135 | 309 | PLN00135, PLN00135, malate dehydrogenase | 2e-64 | |
| cd00650 | 263 | cd00650, LDH_MDH_like, NAD-dependent, lactate dehy | 4e-56 | |
| COG0039 | 313 | COG0039, Mdh, Malate/lactate dehydrogenases [Energ | 2e-48 | |
| TIGR01756 | 313 | TIGR01756, LDH_protist, lactate dehydrogenase | 4e-46 | |
| cd05295 | 452 | cd05295, MDH_like, Malate dehydrogenase-like | 3e-45 | |
| pfam00056 | 142 | pfam00056, Ldh_1_N, lactate/malate dehydrogenase, | 7e-44 | |
| pfam02866 | 173 | pfam02866, Ldh_1_C, lactate/malate dehydrogenase, | 2e-20 | |
| cd05294 | 309 | cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas | 1e-10 | |
| PTZ00117 | 319 | PTZ00117, PTZ00117, malate dehydrogenase; Provisio | 4e-10 | |
| cd01339 | 300 | cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik | 8e-09 | |
| PRK06223 | 307 | PRK06223, PRK06223, malate dehydrogenase; Reviewed | 1e-08 | |
| TIGR01763 | 305 | TIGR01763, MalateDH_bact, malate dehydrogenase, NA | 2e-05 | |
| PTZ00325 | 321 | PTZ00325, PTZ00325, malate dehydrogenase; Provisio | 2e-05 | |
| TIGR01772 | 312 | TIGR01772, MDH_euk_gproteo, malate dehydrogenase, | 6e-05 | |
| cd05291 | 306 | cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd | 8e-05 | |
| cd05290 | 307 | cd05290, LDH_3, A subgroup of L-lactate dehydrogen | 8e-05 | |
| PRK05086 | 312 | PRK05086, PRK05086, malate dehydrogenase; Provisio | 3e-04 | |
| TIGR01771 | 299 | TIGR01771, L-LDH-NAD, L-lactate dehydrogenase | 0.001 | |
| cd05292 | 308 | cd05292, LDH_2, A subgroup of L-lactate dehydrogen | 0.001 | |
| cd00300 | 300 | cd00300, LDH_like, L-lactate dehydrogenase-like en | 0.002 | |
| cd01337 | 310 | cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma | 0.002 | |
| PRK00066 | 315 | PRK00066, ldh, L-lactate dehydrogenase; Reviewed | 0.004 |
| >gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Score = 593 bits (1530), Expect = 0.0
Identities = 257/322 (79%), Positives = 278/322 (86%), Gaps = 7/322 (2%)
Query: 2 AVVAQLSPSSYTET-----TRLSSSQLSLSSTHLSSLRRRAFRPIIGPRNPTISCSVNQV 56
VA+LS T +RL SSQL LS THLS+ RRA P N ISCSVNQ
Sbjct: 1 MAVAELSTPKVTSPFLNTSSRLRSSQLGLSRTHLSNHFRRALLPRRRATNARISCSVNQA 60
Query: 57 -QAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFK 115
QAP AV++ K+K +CYGVFCLTYDLKAEEETKSWKK++N+AVSGAAGMI+NHLLFK
Sbjct: 61 SQAPAAVQEKGVKTK-KECYGVFCLTYDLKAEEETKSWKKLINVAVSGAAGMISNHLLFK 119
Query: 116 LAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175
LA+GEV GPDQPIALKLLGSERS QALEGVAMELEDSL+PLLREV IGI+PYE+F+DAEW
Sbjct: 120 LASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179
Query: 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKN 235
ALLIGAKPRGPGMERA LLDINGQIFAEQGKALN VASRNVKVIVVGNPCNTNALICLKN
Sbjct: 180 ALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKN 239
Query: 236 APSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGL 295
AP+IPAKNFHALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+INGL
Sbjct: 240 APNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKINGL 299
Query: 296 PVKEIIKDHKWLEEGFTETIQK 317
PVKE+I DHKWLEE FT +QK
Sbjct: 300 PVKEVITDHKWLEEEFTPKVQK 321
|
Length = 444 |
| >gnl|CDD|130818 TIGR01757, Malate-DH_plant, malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Score = 470 bits (1210), Expect = e-167
Identities = 209/268 (77%), Positives = 234/268 (87%), Gaps = 5/268 (1%)
Query: 52 SVNQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEE--TKSWKKMVNIAVSGAAGMIA 109
+ QVQA VA + + T CYGVFCL+YDLK E++ TKSWKK VN+AVSGAAGMI+
Sbjct: 1 AAKQVQAGVATAE---AAATKKCYGVFCLSYDLKNEDKSLTKSWKKTVNVAVSGAAGMIS 57
Query: 110 NHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL 169
NHLLF LA+GEV G DQPIALKLLGSERS +ALEGVAMELEDSL+PLLREV IGI+PYE+
Sbjct: 58 NHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEV 117
Query: 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229
FEDA+WALLIGAKPRGPGMERA LLDINGQIFA+QGKALNAVAS+N KV+VVGNPCNTNA
Sbjct: 118 FEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNA 177
Query: 230 LICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLN 289
LI +KNAP+IP KNFHALTRLDENRAKCQLALK+G FY VSN+TIWGNHSTTQVPDF+N
Sbjct: 178 LIAMKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVN 237
Query: 290 ARINGLPVKEIIKDHKWLEEGFTETIQK 317
A+I G P KE+IKD KWLEE FT T+QK
Sbjct: 238 AKIGGRPAKEVIKDTKWLEEEFTPTVQK 265
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. Length = 387 |
| >gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Score = 423 bits (1090), Expect = e-149
Identities = 145/223 (65%), Positives = 169/223 (75%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
K V +AV+GAAG I LLF++A+GE+ GPDQP+ L+LL ++L+ALEGVAMELED F
Sbjct: 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAF 60
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
PLL E+ I +P F+DA+WALL+GAKPRGPGMERA LL NG+IF QGKALN VASR
Sbjct: 61 PLLAEIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASR 120
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
+VKV+VVGNPCNTNALI +KNAP IP NF A+TRLD NRAK QLA KAGV V NM
Sbjct: 121 DVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMV 180
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
IWGNHS TQ PDF NA I G P E+I D WLE+ F T+QK
Sbjct: 181 IWGNHSPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQK 223
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322 |
| >gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase | Back alignment and domain information |
|---|
Score = 374 bits (962), Expect = e-130
Identities = 140/224 (62%), Positives = 166/224 (74%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
KK V +AV+GAAG I LLF++A+GE+ G DQP+ L LL +++ALEGVAMELED
Sbjct: 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCA 60
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL V +P E F+D + ALL+GA PR PGMERA LL NG+IF EQGKALN VA
Sbjct: 61 FPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAK 120
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP IP KNF A+TRLD NRAK QLA KAGV V N+
Sbjct: 121 KDVKVLVVGNPANTNALIASKNAPDIPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNV 180
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
IWGNHS TQVPDF +A ++G PVKE+IKD KWLE F T+Q+
Sbjct: 181 IIWGNHSNTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQ 224
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323 |
| >gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 373 bits (960), Expect = e-130
Identities = 133/224 (59%), Positives = 165/224 (73%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++A+G++LG DQP+ L+LL +L+ALEGV MEL+D
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL V I +P F+DA+ ALL+GA+PRGPGMER LL+ NG IF QGKALN VA+
Sbjct: 62 FPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAA 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
R+VKV+VVGNP NTNALI +KNAP +PA+NF A+TRLD NRA QLA KAGV + M
Sbjct: 122 RDVKVLVVGNPANTNALIAMKNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPVADIKKM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
T+WGNHS TQ PDF +A I+G P E+I D WLE+ F T+QK
Sbjct: 182 TVWGNHSATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQK 225
|
Length = 326 |
| >gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase | Back alignment and domain information |
|---|
Score = 347 bits (893), Expect = e-119
Identities = 124/224 (55%), Positives = 157/224 (70%), Gaps = 3/224 (1%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+++ ++GAAG I +LLF +A+GE+ G DQP+ L LL +++ALEGV MEL+D FPL
Sbjct: 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPL 60
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L+ V I +P E F+D + A+L+GA PR PGMERA LL N +IF EQG+ALN VA V
Sbjct: 61 LKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTV 120
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
KV+VVGNP NTNALI LKNAP++P KNF ALTRLD NRAK Q+A K GV V N+ IW
Sbjct: 121 KVLVVGNPANTNALIALKNAPNLPPKNFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIW 180
Query: 277 GNHSTTQVPDFLNARINGLPVKEIIKDH---KWLEEGFTETIQK 317
GNHS TQVPD NA + G E + D +WL + F +T+QK
Sbjct: 181 GNHSNTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQK 224
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323 |
| >gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Score = 313 bits (804), Expect = e-106
Identities = 124/225 (55%), Positives = 153/225 (68%), Gaps = 4/225 (1%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL +A G+V GPDQP+ L LL +L+ALEGV MEL+D FPL
Sbjct: 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPL 62
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L+ V +P E F+D + A+L+GA PR GMER LL N +IF EQG+AL+ A +NV
Sbjct: 63 LKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNV 122
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
KV+VVGNP NTNALI LK APSIP +NF ALTRLD NRAK Q+ALK GV V N+ IW
Sbjct: 123 KVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNRAKSQIALKLGVPVSDVKNVIIW 182
Query: 277 GNHSTTQVPDFLNARIN----GLPVKEIIKDHKWLEEGFTETIQK 317
GNHS+TQ PD +A + G P +E +KD WL F T+QK
Sbjct: 183 GNHSSTQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQK 227
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325 |
| >gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Score = 246 bits (630), Expect = 5e-80
Identities = 113/223 (50%), Positives = 143/223 (64%), Gaps = 4/223 (1%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+ V+GAAG I LL +A G +LG DQPI L LL +++ LEGV MEL D FPLL
Sbjct: 2 VVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLD 61
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
V +P F D + A+L+GA PR GMER LL N +IF EQG+AL+ +A ++ KV
Sbjct: 62 GVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKV 121
Query: 219 IVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGN 278
+VVGNP NTNAL+ APSIP KNF ALTRLD NRA Q+A +AGV V N+ IWGN
Sbjct: 122 LVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGN 181
Query: 279 HSTTQVPDFLNARING----LPVKEIIKDHKWLEEGFTETIQK 317
HS+TQ PD +A + PV+E IKD +L+ F T+Q+
Sbjct: 182 HSSTQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQ 224
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324 |
| >gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase | Back alignment and domain information |
|---|
Score = 206 bits (525), Expect = 2e-64
Identities = 90/206 (43%), Positives = 122/206 (59%), Gaps = 4/206 (1%)
Query: 116 LAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175
+A G +LGPDQP+ L +L + +AL GV MEL D+ FPLL+ V + E +
Sbjct: 2 IARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVNI 61
Query: 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKN 235
A+++G PR GMER ++ N I+ Q AL A+ + KV+VV NP NTNALI +
Sbjct: 62 AVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKEF 121
Query: 236 APSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIN-- 293
APSIP KN LTRLD NRA Q++ + GV V N+ IWGNHS+TQ PD +A +
Sbjct: 122 APSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSSTQYPDVNHATVKTP 181
Query: 294 --GLPVKEIIKDHKWLEEGFTETIQK 317
PV+E++ D WL F T+Q+
Sbjct: 182 SGEKPVRELVADDAWLNGEFITTVQQ 207
|
Length = 309 |
| >gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Score = 182 bits (465), Expect = 4e-56
Identities = 70/206 (33%), Positives = 102/206 (49%), Gaps = 10/206 (4%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-L 157
IAV GA G + L F LA G V I L L + + L+GVAM+L+D++ PL
Sbjct: 1 IAVIGAGGNVGPALAFGLADGSV---LLAIELVLYDIDE--EKLKGVAMDLQDAVEPLAD 55
Query: 158 REVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
+V I +PYE F+DA+ ++ R PGM R LL N I E G + + +
Sbjct: 56 IKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSP-DAW 114
Query: 218 VIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG 277
+IVV NP + + + + +P + L LD R + LA K GV D V + I G
Sbjct: 115 IIVVSNPVDIITYLVWRYSG-LPKEKVIGLGTLDPIRFRRILAEKLGVDPDDV-KVYILG 172
Query: 278 NHSTTQVPDFLNARINGLPVKEIIKD 303
H +QVPD+ RI + ++I+
Sbjct: 173 EHGGSQVPDWSTVRI-ATSIADLIRS 197
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263 |
| >gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 2e-48
Identities = 70/221 (31%), Positives = 108/221 (48%), Gaps = 12/221 (5%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+AV GA G + + L F L + LG + L L+ + + + EGVA++L + PL
Sbjct: 3 VAVIGA-GNVGSSLAF-LLLLQGLGSE----LVLI--DINEEKAEGVALDLSHAAAPLGS 54
Query: 159 EVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
+VKI G YE + A+ ++ PR PGM R LL+ N +I + KA+ A +
Sbjct: 55 DVKITGDGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAI 113
Query: 218 VIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG 277
V+VV NP + I +K + + + T LD R + LA K GV V I G
Sbjct: 114 VLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVI-G 172
Query: 278 NHSTTQVPDFLNARINGLPVKEIIK-DHKWLEEGFTETIQK 317
H T VP + A + G P++E++K D + E E ++
Sbjct: 173 EHGDTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRN 213
|
Length = 313 |
| >gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 4e-46
Identities = 73/207 (35%), Positives = 111/207 (53%), Gaps = 1/207 (0%)
Query: 112 LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171
L +A G++ G ++P+ L LL +L LE +AMELED FP L + E F+
Sbjct: 1 LSHWIANGDLYG-NRPVCLHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEEAFK 59
Query: 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231
D + A L+ + P PG RA LL N IF G+AL+ A VKV+V+GNP NTN L+
Sbjct: 60 DIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLV 119
Query: 232 CLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAR 291
+ +AP + A+NF +L LD NRA ++A K V D + ++ +WGNH+ + V D +A
Sbjct: 120 AMLHAPKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAESMVADLTHAE 179
Query: 292 INGLPVKEIIKDHKWLEEGFTETIQKV 318
+ + D + + + +
Sbjct: 180 FTKNGKHQKVFDELCRDYPEPDFFEVI 206
|
This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313 |
| >gnl|CDD|133431 cd05295, MDH_like, Malate dehydrogenase-like | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 3e-45
Identities = 82/268 (30%), Positives = 128/268 (47%), Gaps = 18/268 (6%)
Query: 83 DLKAEEETKSWKKMVN---IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL 139
+++ EEE + +N + ++ A+ + HL+ LA+GEV G ++ I++ LL S +L
Sbjct: 109 EVEKEEEEL--RSKINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENL 166
Query: 140 QALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQ 199
+ L+G+ ME+ED FPLLR + + + F+DA +L+ G + G +
Sbjct: 167 EKLKGLVMEVEDLAFPLLRGISVTTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVA 226
Query: 200 IFAEQGKALNAVASRNVKVIVVG-NPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
I G + A +VKVIV G N I +K APSIP KN A+ RL ENRAK
Sbjct: 227 ICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVARLQENRAKAL 286
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGL------------PVKEIIKDHKW 306
LA K V + ++ +WGN D AR+ PV E++ D KW
Sbjct: 287 LARKLNVNSAGIKDVIVWGNIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKW 346
Query: 307 LEEGFTETIQKVRLVDNFTLILFVMNCI 334
+ F T++ + N + + I
Sbjct: 347 INGEFVATLKSLSSSLNHEAAISPAHAI 374
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 452 |
| >gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 7e-44
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
V +AV GA G + + L F LA + L + L L+ + EGVAM+L L
Sbjct: 1 VKVAVVGAGGGVGSSLAFALA-LQGLADE----LVLVDINK--DKAEGVAMDLSHGSTFL 53
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
+G + YE +DA+ ++ PR PGM R LL+ N IF + A+ A +
Sbjct: 54 SVPGIVGGDDYEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAP-DA 112
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHA 246
V+VV NP + I K + P + +
Sbjct: 113 IVLVVSNPVDILTYIAWKVSGLPPERVIGS 142
|
L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142 |
| >gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 2e-20
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLP----VKEIIKD 303
T LD RA+ LA K GV + N+ + G HS TQ PD+ +A++ +P VKE +KD
Sbjct: 1 TTLDTARARTFLAEKFGV-DPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKD 59
Query: 304 HKWLEEGFTETIQK 317
W E E +Q
Sbjct: 60 TDWELEELIERVQN 73
|
L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173 |
| >gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 1e-10
Identities = 51/224 (22%), Positives = 100/224 (44%), Gaps = 11/224 (4%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ +++ GA+G + + LA +V+ + L+ +SL+ L+G+ +++ D+L
Sbjct: 1 MKVSIIGASGRVGSATALLLAKEDVVK-----EINLISRPKSLEKLKGLRLDIYDALAAA 55
Query: 157 LREVKIGIN-PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
+ +I I+ ++ ++ PR GM R L N +I + K + A + +
Sbjct: 56 GIDAEIKISSDLSDVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQI-AEFAPD 114
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
K++VV NP + LK + + F T LD R K +A V +V I
Sbjct: 115 TKILVVTNPVDVMTYKALKESGFDKNRVFGLGTHLDSLRFKVAIAKHFNVHISEVHTRII 174
Query: 276 WGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVR 319
G H + VP + I G+P+K ++ + + ++ V+
Sbjct: 175 -GEHGDSMVPLISSTSIGGIPIKRFP---EYKDFDVEKIVETVK 214
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309 |
| >gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 4e-10
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 4/158 (2%)
Query: 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222
G N YE +D++ ++ R M R LL ING+I +++ N VI V
Sbjct: 64 GTNNYEDIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVK-KYCPNAFVICVT 122
Query: 223 NPCNTNALICLKNAPSIPAKNFHALT-RLDENRAKCQLALKAGVFYDKVSNMTIWGNHST 281
NP + + + IP+ + LD +R +C LA K GV VS + I G H
Sbjct: 123 NPLDCMVKV-FQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVI-GGHGD 180
Query: 282 TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVR 319
VP +NG+P+ + +K E+ E I+K R
Sbjct: 181 LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTR 218
|
Length = 319 |
| >gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 8e-09
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 7/167 (4%)
Query: 143 EGVAMELEDSLFPLLR-EVKI-GINPYELFEDAEWALLIGA-KPRGPGMERAGLLDINGQ 199
+G A+++ + P+L + K+ G N YE ++ ++I A PR PGM R LL N +
Sbjct: 36 QGKALDISQAA-PILGSDTKVTGTNDYEDIAGSD-VVVITAGIPRKPGMSRDDLLGTNAK 93
Query: 200 IFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQL 259
I E + + A N VIVV NP + + K + + LD R + +
Sbjct: 94 IVKEVAENIKKYAP-NAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMAGVLDSARFRYFI 152
Query: 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW 306
A + GV V M + G H T VP + + G+P+ E+I +
Sbjct: 153 AEELGVSVKDVQAMVL-GGHGDTMVPLPRYSTVGGIPLTELITKEEI 198
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300 |
| >gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 1e-08
Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 27/231 (11%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAA---GEVLGPDQPIALKLLGSERSLQALEGVAMELED 151
I++ GA G + L LA G+V+ L +G A+++ +
Sbjct: 1 ARKKISIIGA-GNVGATLAHLLALKELGDVV---------LFD--IVEGVPQGKALDIAE 48
Query: 152 SLFPLLREVKI-GINPYELFEDAEWALLIGAK-PRGPGMERAGLLDINGQIFAEQGKALN 209
+ + KI G N YE ++ ++I A PR PGM R LL IN +I + + +
Sbjct: 49 AAPVEGFDTKITGTNDYEDIAGSD-VVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIK 107
Query: 210 AVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHAL-TRLDENRAKCQLALKAGVFYD 268
A + VIVV NP + + LK P + LD R + +A + V
Sbjct: 108 KYAP-DAIVIVVTNPVDAMTYVALK-ESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVK 165
Query: 269 KVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVR 319
V+ + G H + VP + + G+P+++++ K L+ E +++ R
Sbjct: 166 DVTAFVL-GGHGDSMVPLVRYSTVGGIPLEDLLSKEK-LD----EIVERTR 210
|
Length = 307 |
| >gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 7/179 (3%)
Query: 128 IALKLLGSERSLQALEGV----AMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAK 182
+A K L L +EG+ A+++ ++ + K+ G N Y +++ ++
Sbjct: 20 LAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDIVVITAGL 79
Query: 183 PRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAK 242
PR PGM R LL +N I E + S N ++VV NP + + + + +
Sbjct: 80 PRKPGMSREDLLSMNAGIVREVTGRI-MEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKER 138
Query: 243 NFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEII 301
LD R + +A++ GV V+ + G H VP + + G+PV ++I
Sbjct: 139 VIGQAGVLDSARFRTFIAMELGVSVQDVTACVL-GGHGDAMVPLVRYSTVAGIPVADLI 196
|
This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305 |
| >gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 67/209 (32%), Positives = 87/209 (41%), Gaps = 36/209 (17%)
Query: 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL--LGSERSLQAL---EGVA 146
S KM +AV GAAG I L + LK SE SL + GVA
Sbjct: 4 SALKMFKVAVLGAAGGIGQPLS--------------LLLKQNPHVSELSLYDIVGAPGVA 49
Query: 147 MELE--DSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQ 204
+L D+ + G + A+ L+ PR PGM R L + N I +
Sbjct: 50 ADLSHIDTP-AKVTGYADGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRD- 107
Query: 205 GKALNAVASRNVKVI--VVGNPCNTNALIC---LKNAPSI-PAKNFHALTRLDENRAKCQ 258
+ AVAS K I +V NP N+ I LK A P K F +T LD RA+
Sbjct: 108 --LVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLF-GVTTLDVVRARKF 164
Query: 259 LALKAGVF-YDKVSNMTIWGNHS-TTQVP 285
+A G+ YD N+ + G HS T VP
Sbjct: 165 VAEALGMNPYD--VNVPVVGGHSGVTIVP 191
|
Length = 321 |
| >gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 6e-05
Identities = 52/206 (25%), Positives = 78/206 (37%), Gaps = 42/206 (20%)
Query: 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL----LGSERSLQALE---GVAMELE 150
+AV GAAG I QP++L L SE SL + GVA +L
Sbjct: 1 KVAVLGAAGGIG----------------QPLSLLLKLQPYVSELSLYDIAGAAGVAADLS 44
Query: 151 DSLFPLLREVKIGINPY-------ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAE 203
+ + + A+ ++ PR PGM R L ++N I +
Sbjct: 45 HI------PTAASVKGFSGEEGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKD 98
Query: 204 QGKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHALTRLDENRAKCQLA 260
A+ A + ++V+ NP N+ I LK +T LD RA +A
Sbjct: 99 LVAAV-AESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVA 157
Query: 261 LKAGVFYDKVSNMTIWGNHS-TTQVP 285
G +V N+ + G HS T +P
Sbjct: 158 ELKGKDPMEV-NVPVIGGHSGETIIP 182
|
This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312 |
| >gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 8e-05
Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 6/179 (3%)
Query: 143 EGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFA 202
EG A++LED+L L VKI Y +DA+ ++ P+ PG R LL+ N +I
Sbjct: 39 EGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQKPGETRLDLLEKNAKIMK 98
Query: 203 EQGKALNAVASRNVKVIVVGNPCN--TNALICLKNAPSIPAKNFHALTRLDENRAKCQLA 260
+ A + +V NP + T + L P + T LD R + LA
Sbjct: 99 SIVPKIKASGFDGI-FLVASNPVDVITYVVQKLSGLP--KNRVIGTGTSLDTARLRRALA 155
Query: 261 LKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVR 319
K V V + G H +Q + + G P+ +++K+ K E E + VR
Sbjct: 156 EKLNVDPRSVHAYVL-GEHGDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVR 213
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306 |
| >gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-05
Identities = 38/143 (26%), Positives = 56/143 (39%), Gaps = 6/143 (4%)
Query: 160 VKIGINPYELFEDAEWALLIGAKPR---GPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
KI Y+ DA+ ++I A P G +R L N +I E + V V
Sbjct: 56 TKIRAGDYDDCADAD-IIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAV 114
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
+I++ NP + I K T LD R + +A K GV V+ +
Sbjct: 115 -IILITNPLDIAVYIAATEFDYPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVL- 172
Query: 277 GNHSTTQVPDFLNARINGLPVKE 299
G H + P + I GLP+ E
Sbjct: 173 GEHGSHAFPVWSLVNIAGLPLDE 195
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307 |
| >gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 50/175 (28%), Positives = 71/175 (40%), Gaps = 39/175 (22%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL-----LGSERSLQALE----GVAMEL 149
+AV GAAG I Q +AL L GSE SL + GVA++L
Sbjct: 3 VAVLGAAGGIG----------------QALALLLKTQLPAGSELSLYDIAPVTPGVAVDL 46
Query: 150 EDSLFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQI---FAEQ 204
S P ++K G +P E A+ L+ R PGM+R+ L ++N I E+
Sbjct: 47 --SHIPTAVKIKGFSGEDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEK 104
Query: 205 GKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHALTRLDENRAK 256
A + ++ NP NT I LK A +T LD R++
Sbjct: 105 V----AKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSE 155
|
Length = 312 |
| >gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 9/182 (4%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
EG AM+L+ + L KI Y +DA+ ++ P+ PG R L+ N +I
Sbjct: 34 AEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGETRLELVGRNVRIM 93
Query: 202 AEQGKALNAVASR-NVKVIVVGNPCN--TNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
V S + +V NP + T L P + + T LD R +
Sbjct: 94 KS--IVPEVVKSGFDGIFLVATNPVDILTYVAWKLSGFP--KNRVIGSGTVLDTARLRYL 149
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETI-QK 317
LA K GV + + I G H ++VP + +A I G+P+ + +K + E I ++
Sbjct: 150 LAEKLGV-DPQSVHAYIIGEHGDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKE 208
Query: 318 VR 319
VR
Sbjct: 209 VR 210
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299 |
| >gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.001
Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 19/186 (10%)
Query: 143 EGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDINGQ 199
EG AM+L P ++ V+I Y + A +++ GA + PG R LL N
Sbjct: 39 EGEAMDLAHGT-PFVKPVRIYAGDYADCKGA--DVVVITAGANQK-PGETRLDLLKRNVA 94
Query: 200 IFAEQGKALNAVASRNVKVIVVGNPCNTNALICLK--NAPSIPAKNFHALTRLDENRAKC 257
IF E + + + ++VV NP + + K P P + + T LD R +
Sbjct: 95 IFKEIIPQI-LKYAPDAILLVVTNPVDVLTYVAYKLSGLP--PNRVIGSGTVLDTARFRY 151
Query: 258 QLALKAGVFYDKVSNM--TIWGNHSTTQVPDFLNARINGLPVKEIIKDHK--WLEEGFTE 313
L GV ++ I G H ++V + +A I G+P+ E K + EE E
Sbjct: 152 LLGEHLGV---DPRSVHAYIIGEHGDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREE 208
Query: 314 TIQKVR 319
++VR
Sbjct: 209 IFEEVR 214
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308 |
| >gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 3/194 (1%)
Query: 125 DQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPR 184
+ +A +L+ + + + +G A++L + L + Y DA+ ++ PR
Sbjct: 19 AKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPR 78
Query: 185 GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNF 244
PG R L++ N I L + ++VV NP + + K + +
Sbjct: 79 KPGETRLDLINRNAPILRSVITNLKK-YGPDAIILVVSNPVDILTYVAQKLSGLPKNRVI 137
Query: 245 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH 304
+ T LD R + LA K V V + + G H +QV + A + GLP++E+
Sbjct: 138 GSGTLLDSARFRSLLAEKLDVDPQSV-HAYVLGEHGDSQVVAWSTATVGGLPLEELAPFT 196
Query: 305 KW-LEEGFTETIQK 317
K LE E
Sbjct: 197 KLDLEAIEEEVRTS 210
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300 |
| >gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.002
Identities = 63/209 (30%), Positives = 85/209 (40%), Gaps = 46/209 (22%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL----LGSERSLQ---ALEGVAMEL 149
V +AV GAAG I QP++L L L SE +L GVA +L
Sbjct: 1 VKVAVLGAAGGIG----------------QPLSLLLKLNPLVSELALYDIVNTPGVAADL 44
Query: 150 EDSLFPLLREVKIGINPYELFEDAEWALLIGAK--------PRGPGMERAGLLDINGQIF 201
S +V G E + A L GA PR PGM R L +IN I
Sbjct: 45 --SHINTPAKVT-GYLGPEELKKA----LKGADVVVIPAGVPRKPGMTRDDLFNINAGIV 97
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALIC----LKNAPSIPAKNFHALTRLDENRAKC 257
+ A+ A A ++++ NP N+ I K P + F +T LD RA
Sbjct: 98 RDLATAV-AKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLF-GVTTLDVVRANT 155
Query: 258 QLALKAGVFYDKVSNMTIWGNHS-TTQVP 285
+A G+ KV N+ + G HS T +P
Sbjct: 156 FVAELLGLDPAKV-NVPVIGGHSGVTILP 183
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310 |
| >gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.004
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 16/185 (8%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
EG AM+L ++ P KI Y +DA+ ++ P+ PG R L++ N +IF
Sbjct: 44 AEGDAMDLSHAV-PFTSPTKIYAGDYSDCKDADLVVITAGAPQKPGETRLDLVEKNLKIF 102
Query: 202 AEQGKALNAVASRNVKVI--VVGNPCN--TNALICLKNAPSIPAKN--FHALTRLDENRA 255
+ +AS I V NP + T A L P K + T LD R
Sbjct: 103 --KSIVGEVMAS-GFDGIFLVASNPVDILTYATWKLSGFP----KERVIGSGTSLDSARF 155
Query: 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETI 315
+ L+ K V V I G H T+ P + +A + G+P++E +++++ +E + I
Sbjct: 156 RYMLSEKLDVDPRSVHAYII-GEHGDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEI 214
Query: 316 -QKVR 319
+ VR
Sbjct: 215 FENVR 219
|
Length = 315 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 337 | |||
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 100.0 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 100.0 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 100.0 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 100.0 | |
| KOG1496 | 332 | consensus Malate dehydrogenase [Energy production | 100.0 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 100.0 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 100.0 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 100.0 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 100.0 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 100.0 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 100.0 | |
| PLN02602 | 350 | lactate dehydrogenase | 100.0 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 100.0 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 100.0 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 100.0 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 100.0 | |
| PLN00135 | 309 | malate dehydrogenase | 100.0 | |
| TIGR01756 | 313 | LDH_protist lactate dehydrogenase. This model repr | 100.0 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 100.0 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 100.0 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 100.0 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 100.0 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 100.0 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 100.0 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 100.0 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 100.0 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 100.0 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 100.0 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 100.0 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 100.0 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 100.0 | |
| PLN00106 | 323 | malate dehydrogenase | 100.0 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 100.0 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 100.0 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 100.0 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 99.97 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 99.96 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 99.95 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 99.95 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 99.92 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 99.9 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 99.84 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 99.72 | |
| PF02866 | 174 | Ldh_1_C: lactate/malate dehydrogenase, alpha/beta | 99.62 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 98.95 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 98.92 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.78 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.72 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 98.68 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 98.66 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.66 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 98.65 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.64 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.64 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.45 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.45 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 98.44 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 98.43 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.34 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.33 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 98.33 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.31 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.24 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 98.15 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 98.14 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 98.12 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 98.12 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.07 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 97.91 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.9 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 97.75 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 97.73 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.71 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 97.65 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 97.62 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 97.6 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 97.57 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 97.56 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 97.55 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 97.54 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.52 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.51 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 97.51 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 97.48 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.46 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 97.38 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 97.34 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 97.32 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 97.3 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 97.28 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 97.24 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.24 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 97.24 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 97.23 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 97.23 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 97.21 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 97.19 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 97.18 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 97.15 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 97.12 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 97.12 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 97.12 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.08 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.03 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 96.99 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.98 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 96.97 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.92 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 96.86 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 96.84 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 96.82 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.8 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 96.75 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 96.72 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 96.71 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 96.71 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.7 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 96.7 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 96.66 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.66 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 96.65 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 96.64 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 96.6 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 96.6 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 96.55 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 96.53 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 96.51 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 96.49 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.46 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 96.46 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 96.45 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 96.44 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 96.42 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.42 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.42 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 96.42 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 96.41 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 96.39 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 96.38 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.38 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 96.37 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 96.34 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 96.32 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 96.31 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 96.31 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 96.29 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 96.26 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 96.23 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 96.23 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.22 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 96.2 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 96.19 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.19 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 96.16 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 96.16 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 96.14 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 96.14 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 96.13 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 96.13 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 96.12 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 96.1 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 96.1 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 96.09 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 96.09 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 96.06 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 96.05 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 96.04 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.01 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 95.96 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 95.94 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 95.91 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 95.89 | |
| PLN02256 | 304 | arogenate dehydrogenase | 95.88 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 95.84 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 95.82 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 95.8 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 95.77 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 95.76 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 95.76 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 95.75 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 95.75 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 95.74 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 95.74 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 95.73 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 95.72 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 95.69 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 95.65 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 95.64 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 95.63 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.6 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.58 | |
| PLN02712 | 667 | arogenate dehydrogenase | 95.58 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 95.57 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 95.57 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 95.56 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 95.55 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 95.52 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 95.5 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.49 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 95.46 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 95.43 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 95.43 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 95.43 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 95.43 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 95.42 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 95.41 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 95.35 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 95.34 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 95.33 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 95.33 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 95.32 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 95.27 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 95.25 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 95.24 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 95.23 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 95.23 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 95.22 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.22 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 95.21 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 95.21 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 95.18 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 95.13 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 95.12 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 95.09 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 95.08 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 95.07 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 95.07 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 95.07 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 95.07 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 95.05 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 95.04 | |
| PRK08643 | 256 | acetoin reductase; Validated | 95.04 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 95.03 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 95.03 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.03 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 95.02 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.99 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 94.98 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 94.97 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 94.93 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 94.93 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 94.92 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 94.92 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 94.92 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 94.91 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 94.89 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 94.89 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 94.88 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 94.88 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 94.88 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 94.88 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 94.86 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 94.84 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 94.83 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 94.83 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 94.83 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 94.81 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 94.81 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 94.81 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.8 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 94.79 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 94.78 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 94.76 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 94.76 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 94.75 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 94.74 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 94.67 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 94.67 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 94.66 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 94.66 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 94.65 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 94.64 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 94.64 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 94.62 | |
| PRK05717 | 255 | oxidoreductase; Validated | 94.62 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 94.6 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 94.6 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 94.6 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 94.6 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 94.57 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 94.55 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 94.55 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 94.45 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 94.44 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 94.44 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 94.43 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 94.42 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 94.42 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 94.41 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 94.41 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 94.37 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 94.37 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 94.36 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 94.36 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 94.35 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.33 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 94.3 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 94.29 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.27 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 94.26 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 94.26 | |
| PLN02712 | 667 | arogenate dehydrogenase | 94.25 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 94.25 | |
| COG5322 | 351 | Predicted dehydrogenase [General function predicti | 94.2 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 94.16 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 94.13 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 94.11 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 94.1 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 94.1 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 94.07 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 94.07 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 94.07 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 94.06 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 94.06 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 94.04 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 94.04 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 94.03 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 94.03 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 94.02 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 94.02 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 94.01 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 94.0 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 93.95 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 93.94 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 93.93 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 93.92 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 93.88 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 93.87 | |
| PRK13535 | 336 | erythrose 4-phosphate dehydrogenase; Provisional | 93.87 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 93.84 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 93.83 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 93.83 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 93.83 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 93.81 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 93.79 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 93.76 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 93.75 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 93.74 | |
| PRK08223 | 287 | hypothetical protein; Validated | 93.74 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 93.66 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 93.66 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 93.65 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 93.62 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 93.61 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 93.59 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 93.59 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 93.58 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 93.57 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 93.54 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 93.5 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 93.49 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 93.48 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 93.45 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 93.45 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 93.44 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 93.43 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 93.42 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 93.4 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.39 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 93.38 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 93.36 | |
| PLN03129 | 581 | NADP-dependent malic enzyme; Provisional | 93.36 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 93.34 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 93.34 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 93.33 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 93.32 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 93.31 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 93.3 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 93.3 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.29 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 93.29 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.27 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 93.24 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 93.24 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 93.23 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 93.21 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 93.21 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 93.21 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 93.21 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 93.2 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 93.18 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 93.16 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 93.16 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 93.14 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 93.1 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 93.07 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 93.05 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 93.01 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 92.98 | |
| PF11975 | 232 | Glyco_hydro_4C: Family 4 glycosyl hydrolase C-term | 92.98 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 92.98 | |
| KOG4777 | 361 | consensus Aspartate-semialdehyde dehydrogenase [Am | 92.96 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 92.96 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 92.94 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 92.92 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 92.91 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 92.89 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 92.85 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 92.84 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 92.78 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 92.77 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 92.77 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 92.75 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 92.72 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 92.71 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 92.69 | |
| PF03949 | 255 | Malic_M: Malic enzyme, NAD binding domain; InterPr | 92.69 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 92.63 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 92.55 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 92.51 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 92.43 | |
| PLN02928 | 347 | oxidoreductase family protein | 92.43 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 92.4 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 92.39 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 92.39 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 92.36 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 92.34 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 92.28 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.27 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 92.21 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 92.2 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 92.19 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 92.18 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 92.09 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 92.07 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.03 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 91.98 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 91.94 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 91.94 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 91.92 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 91.91 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 91.91 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 91.9 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 91.88 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 91.86 | |
| COG0078 | 310 | ArgF Ornithine carbamoyltransferase [Amino acid tr | 91.84 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 91.79 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 91.72 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 91.6 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 91.58 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 91.56 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 91.54 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 91.53 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 91.52 | |
| PRK07411 | 390 | hypothetical protein; Validated | 91.46 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 91.44 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 91.37 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 91.35 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 91.33 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 91.31 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 91.3 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 91.1 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 91.09 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 91.05 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 91.03 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 91.01 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 90.99 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 90.99 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 90.98 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 90.89 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 90.87 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 90.81 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 90.73 | |
| PRK13529 | 563 | malate dehydrogenase; Provisional | 90.7 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 90.53 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 90.5 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 90.48 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 90.47 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 90.46 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 90.44 | |
| PTZ00317 | 559 | NADP-dependent malic enzyme; Provisional | 90.42 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 90.34 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 90.34 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 90.16 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 90.07 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 90.06 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 89.93 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 89.91 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 89.9 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 89.89 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 89.83 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 89.82 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 89.77 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 89.77 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 89.77 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 89.65 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 89.6 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 89.54 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 89.53 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 89.51 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 89.43 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 89.38 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 89.37 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 89.33 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 89.32 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 89.32 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 89.26 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 89.22 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 89.2 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 89.18 |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-82 Score=630.12 Aligned_cols=326 Identities=79% Similarity=1.170 Sum_probs=304.6
Q ss_pred ceeeeecCCC-----CcccceeccccccccccccCccccccCCCCCCCCCCeeEEEeccc-ccccccccCCCCcCCCCcc
Q 019713 2 AVVAQLSPSS-----YTETTRLSSSQLSLSSTHLSSLRRRAFRPIIGPRNPTISCSVNQV-QAPVAVEQDDPKSKTNDCY 75 (337)
Q Consensus 2 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 75 (337)
++||+++++. .+++++++++|+++++++++.|+|+.|+|++|.++++|+|||+++ |+|+++++++++.| +|||
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 79 (444)
T PLN00112 1 MAVAELSTPKVTSPFLNTSSRLRSSQLGLSRTHLSNHFRRALLPRRRATNARISCSVNQASQAPAAVQEKGVKTK-KECY 79 (444)
T ss_pred CcchhccccccccccccchhhccccccccccccccccccccccccccccccceeeccccccCCCccccccccccC-CCce
Confidence 3577887664 568889999999999999999999999999999999999999999 88888888887666 9999
Q ss_pred ceeeeeeeccchhhhhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccC
Q 019713 76 GVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP 155 (337)
Q Consensus 76 gv~~~~~~~~~~~~~~~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~ 155 (337)
|||||+||+++|+.+++|+++.||+||||+|+||+++|+.|+.+++++.+|++.++|+++|+++++++|++|||+|+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~ 159 (444)
T PLN00112 80 GVFCLTYDLKAEEETKSWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYP 159 (444)
T ss_pred EEEEEEEecccchhhhcCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhh
Confidence 99999999999999999999999999997799999999999999999988999888888899999999999999999877
Q ss_pred CcccEEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHH
Q 019713 156 LLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKN 235 (337)
Q Consensus 156 ~~~~v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~ 235 (337)
++.++.+++++|++++|||+||+++|.||+|||+|.|++..|++|++++++.|+++++|+++||++|||+|+||+++++.
T Consensus 160 ~~~~v~i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~ 239 (444)
T PLN00112 160 LLREVSIGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKN 239 (444)
T ss_pred hcCceEEecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHH
Confidence 76778888899999999999999999999999999999999999999999999996589999999999999999999999
Q ss_pred CCCCCCCeEEecCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHH
Q 019713 236 APSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETI 315 (337)
Q Consensus 236 s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v 315 (337)
++.+|+|+||+||.||++|++++||+++|+++++|+++|||||||++|||+||+++|+|+|+.+++.+++|+.++|.+++
T Consensus 240 sg~~~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v 319 (444)
T PLN00112 240 APNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKV 319 (444)
T ss_pred cCCCCcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCCceeeccceeEECCccHHHhhccccchHHHHHHHH
Confidence 98777799999999999999999999999999999877999999999999999999999999999987789899999999
Q ss_pred HhccCcccceehe
Q 019713 316 QKVRLVDNFTLIL 328 (337)
Q Consensus 316 ~~~g~~~~~~l~~ 328 (337)
+++|++.-...++
T Consensus 320 ~~~g~~Ii~~kG~ 332 (444)
T PLN00112 320 QKRGGVLIKKWGR 332 (444)
T ss_pred HHHHHHHHhccCc
Confidence 9999987665543
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-68 Score=524.76 Aligned_cols=272 Identities=75% Similarity=1.160 Sum_probs=252.5
Q ss_pred ccccccccccCCCCcCCCCccceeeeeeeccchhh--hhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEe
Q 019713 55 QVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEE--TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132 (337)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~--~~~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L 132 (337)
..|+|+.|.+++++.. +.|||||||+||+++|++ .++|+++.||+||||+|+||+++|+.|+.+++++++|+|.|+|
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L 80 (387)
T TIGR01757 2 AKQVQAGVATAEAAAT-KKCYGVFCLSYDLKNEDKSLTKSWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKL 80 (387)
T ss_pred chhhhcccchhhHHhh-hcceEEEEEEeecCcchhHHHhcCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEE
Confidence 3478888777777774 899999999999999998 6678889999999977999999999999999999889999999
Q ss_pred ccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhc
Q 019713 133 LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA 212 (337)
Q Consensus 133 ~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a 212 (337)
+|+|.++++++|++|||+|+.+++..++++++++|++++|||+||+++|.||+||++|.|++..|++|++++++.|++++
T Consensus 81 ~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a 160 (387)
T TIGR01757 81 LGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVA 160 (387)
T ss_pred eccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999877666788788999999999999999999999999999999999999999999999997
Q ss_pred CCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEEecCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceE
Q 019713 213 SRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI 292 (337)
Q Consensus 213 ~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V 292 (337)
+|+++|||+|||+|+||+++++.++.+|+|+||+||.||++|+|++||+++++++++|+++|||||||++|||+||+++|
T Consensus 161 ~~~~iviVVsNPvDv~t~v~~k~sg~~~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGds~vp~~S~a~V 240 (387)
T TIGR01757 161 SKNCKVLVVGNPCNTNALIAMKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNAKI 240 (387)
T ss_pred CCCeEEEEcCCcHHHHHHHHHHHcCCCcccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCCcEEecceeeEE
Confidence 79999999999999999999999977777999999999999999999999999999997679999999999999999999
Q ss_pred cCeehhhhhhhcccchHHHHHHHHhccCcccceeh
Q 019713 293 NGLPVKEIIKDHKWLEEGFTETIQKVRLVDNFTLI 327 (337)
Q Consensus 293 ~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~~l~ 327 (337)
+|+|+.+++.+..|+.++|.++++++|+++-...+
T Consensus 241 ~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~KG 275 (387)
T TIGR01757 241 GGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKWG 275 (387)
T ss_pred CCEEhHHhcccccchHHHHHHHHHHHHHHHHhccC
Confidence 99999999877678889999999999997765543
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-55 Score=422.70 Aligned_cols=238 Identities=55% Similarity=0.816 Sum_probs=217.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d 172 (337)
|++|+||+||||+|+||+++|+.|+.+++++.++++.|+|+|+..++++++|+++||+|+.+++..++++++++|++++|
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 57789999999779999999999999999985667788898887677889999999999986665567788899999999
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchh
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LD 251 (337)
||+||+++|.||+||++|.|++..|++|+++++++|+++++|++++|++|||+|+||+++++.+|++|+ |+||+ |.||
T Consensus 81 aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LD 159 (326)
T PRK05442 81 ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAM-TRLD 159 (326)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHHHEEee-eHHH
Confidence 999999999999999999999999999999999999999678999999999999999999999988987 78899 9999
Q ss_pred HHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccceeheeee
Q 019713 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNFTLILFVM 331 (337)
Q Consensus 252 s~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~~l~~~~~ 331 (337)
++|++++||+++++++++|++.+||||||++|||+||+++|+|+|+.+++.+++|..+++.++++++||+.-...++.+|
T Consensus 160 s~R~r~~la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~ 239 (326)
T PRK05442 160 HNRALSQLAAKAGVPVADIKKMTVWGNHSATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEARGASSA 239 (326)
T ss_pred HHHHHHHHHHHhCcChHHeEEeEEEECCcCceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhCcCCccH
Confidence 99999999999999999999755699999999999999999999999998776787889999999999988776655444
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-55 Score=433.80 Aligned_cols=239 Identities=29% Similarity=0.433 Sum_probs=218.9
Q ss_pred eeec--cchhh-hhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCc
Q 019713 81 TYDL--KAEEE-TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL 157 (337)
Q Consensus 81 ~~~~--~~~~~-~~~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~ 157 (337)
.+++ ++|++ +++++++.+|+|+||+|++|+++++.|++|++||.+|+|.|+|+|++.++++++|++|||+|++++++
T Consensus 105 ~~~~~~~~e~~~~~~~~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll 184 (452)
T cd05295 105 ETHIEVEKEEEELRSKINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLL 184 (452)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhc
Confidence 3445 33444 55788899999999999999999999999999999999999999988789999999999999998887
Q ss_pred ccEEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCC-CeEEEEeCCCchhHHHHHHHHC
Q 019713 158 REVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR-NVKVIVVGNPCNTNALICLKNA 236 (337)
Q Consensus 158 ~~v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p-~aivIvvtNPvd~~t~i~~k~s 236 (337)
..+.++++++++|+|||+||+++|.||+|||+|.|++..|++|+++++++|+++|++ ++++|++|||+|+||+++++++
T Consensus 185 ~~v~i~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~~k~a 264 (452)
T cd05295 185 RGISVTTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYA 264 (452)
T ss_pred CCcEEEECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHHHHc
Confidence 778888899999999999999999999999999999999999999999999999532 6778888899999999999999
Q ss_pred CCCCC-CeEEecCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcC------------eehhhhhhh
Q 019713 237 PSIPA-KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARING------------LPVKEIIKD 303 (337)
Q Consensus 237 ~~~p~-kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G------------~pl~e~i~~ 303 (337)
|++|+ ++||++| ||++|++++||+++|+++++|++++||||||+||||+||+++|+| +|+.+++.+
T Consensus 265 pgiP~~rVig~gt-lds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d 343 (452)
T cd05295 265 PSIPRKNIIAVAR-LQENRAKALLARKLNVNSAGIKDVIVWGNIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHD 343 (452)
T ss_pred CCCCHHHEEEecc-hHHHHHHHHHHHHhCcCHHHceeeEEEEccCCceeeeeeEEEEcccccccccccccCccHHHHhcc
Confidence 89998 5678888 779999999999999999999878999999999999999999988 999999877
Q ss_pred cccchHHHHHHHHhccC
Q 019713 304 HKWLEEGFTETIQKVRL 320 (337)
Q Consensus 304 ~~~~~~e~~~~v~~~g~ 320 (337)
++|+.++|.+.|+++|+
T Consensus 344 ~~w~~~~~~~~v~~rg~ 360 (452)
T cd05295 344 SKWINGEFVATLKSLSS 360 (452)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 78888999999999887
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG1496 consensus Malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-55 Score=395.88 Aligned_cols=230 Identities=53% Similarity=0.749 Sum_probs=224.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d 172 (337)
|+++.+|.|.||+|+||+++++.++.+.+||.||++.|+|+|++...+.|+|+.|||+||++|++..+..+++..++|+|
T Consensus 1 ~~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~PlL~~Vvattd~~~afkd 80 (332)
T KOG1496|consen 1 MKEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPLLKGVVATTDEVEAFKD 80 (332)
T ss_pred CCCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhHHHhhhcccChhhhhcc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEEecCchhH
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDE 252 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~LDs 252 (337)
.|++|+.|+.||++||+|.|++..|.+||++++++|++||+|+++|+|++||+|+++.++.+++|.||+++|.+.|+||+
T Consensus 81 v~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~lTRLDh 160 (332)
T KOG1496|consen 81 VDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKFAPSIPEKNFSALTRLDH 160 (332)
T ss_pred CcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhhhCCCCchhcchhhhhhch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcC----eehhhhhhhcccchHHHHHHHHhccCcc
Q 019713 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARING----LPVKEIIKDHKWLEEGFTETIQKVRLVD 322 (337)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G----~pl~e~i~~~~~~~~e~~~~v~~~g~~~ 322 (337)
+|+..+||.++||+.++|++++|||||+.||+|+..+++|++ +|+.|.++|+.|++.+|.+.||+||...
T Consensus 161 NRA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaav 234 (332)
T KOG1496|consen 161 NRALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAV 234 (332)
T ss_pred hhHHHHHHHhhCCchhhcceeEEecccccccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHh
Confidence 999999999999999999999999999999999999999986 9999999999999999999999999754
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=413.12 Aligned_cols=236 Identities=58% Similarity=0.827 Sum_probs=212.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
+++.||+||||+|+||+++++.|+.+++++.++.++|+|+|+..+.++++|+++||+|+.+++...+++++++|++++||
T Consensus 1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~da 80 (323)
T TIGR01759 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDV 80 (323)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCC
Confidence 46889999997799999999999999999856667888888766667899999999999866655667778899999999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs 252 (337)
|+||+++|.||+|||+|.|++..|++|+++++++|++++.|++++|++|||+|+||+++++.++++|+ |+||+ |.||+
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LDs 159 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIASKNAPDIPPKNFSAM-TRLDH 159 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHHH
Confidence 99999999999999999999999999999999999999433999999999999999999999967887 78897 99999
Q ss_pred HHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccceeheee
Q 019713 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNFTLILFV 330 (337)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~~l~~~~ 330 (337)
+|+|++||+++|++|.+|++.+||||||++|+|+||+++|+|+|+.+++.++.|+.+++.++++++|++.-...++-+
T Consensus 160 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~ 237 (323)
T TIGR01759 160 NRAKYQLAAKAGVPVSDVKNVIIWGNHSNTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEARGASS 237 (323)
T ss_pred HHHHHHHHHHhCcChHHeEEeEEEecCCCceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhccCCcc
Confidence 999999999999999999876799999999999999999999999999877667788999999999998866554433
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-54 Score=408.63 Aligned_cols=221 Identities=30% Similarity=0.386 Sum_probs=200.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-CcccccCCCcE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~~~eal~dADv 175 (337)
+||+|||| |+||+++|+.|+..++..| |+|+|+ ++++++|.++||.|+.++....+.++. ++|++++|||+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~e-----l~LiDi--~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDi 72 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSE-----LVLIDI--NEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADI 72 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccce-----EEEEEc--ccccccchhcchhhcchhccCceEEecCCChhhhcCCCE
Confidence 59999996 9999999999966666433 555555 588999999999999977666677765 67999999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHH
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R 254 (337)
||++||.||||||+|+||+..|++|+++++++|+++ +||++|+|+|||+|+|||+++|+++ +|+ |+||++|.||++|
T Consensus 73 VvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~-~~d~ivlVvtNPvD~~ty~~~k~sg-~p~~rvig~gt~LDsaR 150 (313)
T COG0039 73 VVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKY-APDAIVLVVTNPVDILTYIAMKFSG-FPKNRVIGSGTVLDSAR 150 (313)
T ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCeEEEEecCcHHHHHHHHHHhcC-CCccceecccchHHHHH
Confidence 999999999999999999999999999999999999 7999999999999999999999995 555 7899999999999
Q ss_pred HHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhh-hcccchHHHHHHHHhccCcccceehe
Q 019713 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK-DHKWLEEGFTETIQKVRLVDNFTLIL 328 (337)
Q Consensus 255 ~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~-~~~~~~~e~~~~v~~~g~~~~~~l~~ 328 (337)
|+++||+++|+++.+|+. ||+||||++|||+||+++|+|+|+.++++ ++.|+.+++.+.+|++|+++-..++.
T Consensus 151 ~~~~lae~~~v~~~~V~~-~ViGeHGdt~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~kG~ 224 (313)
T COG0039 151 FRTFLAEKLGVSPKDVHA-YVIGEHGDTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKGA 224 (313)
T ss_pred HHHHHHHHhCCChhHcee-eEeccCCCceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHccCc
Confidence 999999999999999996 99999999999999999999999999998 57788899999999999998776644
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=397.82 Aligned_cols=236 Identities=60% Similarity=0.902 Sum_probs=214.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+++||+||||+|+||+++|+.|+.+++++.+++++|+|+|+..+.++++|+++||+|+.+++..++++++++|++++|||
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daD 80 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDAD 80 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCC
Confidence 47899999977999999999999999998667788999988777788999999999998666656778888999999999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~ 253 (337)
+||+++|.||+|||+|.|++..|++|++++++.|++++.|++++|++|||+|+||+++++.++++|+ ++||+ |.||++
T Consensus 81 ivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~ViG~-t~LDs~ 159 (322)
T cd01338 81 WALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAM-TRLDHN 159 (322)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcCCCChHheEEe-hHHHHH
Confidence 9999999999999999999999999999999999999436999999999999999999999966887 78899 999999
Q ss_pred HHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccceeheeee
Q 019713 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNFTLILFVM 331 (337)
Q Consensus 254 R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~~l~~~~~ 331 (337)
|+++.+|+++|+++.+|++.+||||||++|+|+||+++++|+|+.+++.+.+|..+++.++++++||+.-...++.+|
T Consensus 160 Rl~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~ 237 (322)
T cd01338 160 RAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKARGASSA 237 (322)
T ss_pred HHHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCcCCccH
Confidence 999999999999999999756799999999999999999999999988776777889999999999988776655444
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=394.85 Aligned_cols=220 Identities=22% Similarity=0.270 Sum_probs=195.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCc-ccEEEecCcccccCCCcEE
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELFEDAEWA 176 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~t~~~eal~dADvV 176 (337)
||+|||| |+||+++|+.|+.+++++| + +|+ |.++++++|+++||+|+...+. .++++++++|++++|||+|
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~e---l--vL~--Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDiv 72 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSE---I--VLI--DVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADII 72 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCE---E--EEE--eCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEE
Confidence 7999996 9999999999999999875 4 444 4577899999999999773222 3567777899999999999
Q ss_pred EEecccCCCCCCc--hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHH
Q 019713 177 LLIGAKPRGPGME--RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (337)
Q Consensus 177 Iitag~prk~g~~--R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~ 253 (337)
|+|+|.||+|||+ |+|++..|++|++++++.|+++ +|++++|++|||+|+||+++++.+ ++|+ |+||+||.|||+
T Consensus 73 vitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~-~p~~i~ivvsNPvDv~t~~~~k~s-g~p~~rviG~gt~LDs~ 150 (307)
T cd05290 73 VITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILITNPLDIAVYIAATEF-DYPANKVIGTGTMLDTA 150 (307)
T ss_pred EECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecCcHHHHHHHHHHHh-CcChhheecccchHHHH
Confidence 9999999999999 6999999999999999999999 699999999999999999999999 5665 899999999999
Q ss_pred HHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhh---cccchHHHHHHHHhccCcccceehe
Q 019713 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD---HKWLEEGFTETIQKVRLVDNFTLIL 328 (337)
Q Consensus 254 R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~---~~~~~~e~~~~v~~~g~~~~~~l~~ 328 (337)
|++++||+++|+++++|++ |||||||++|||+||+++|+|+|+.+++.. +.|..+++.++++++||+.-...++
T Consensus 151 R~~~~la~~l~v~~~~V~~-~ViGeHGds~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~KG~ 227 (307)
T cd05290 151 RLRRIVADKYGVDPKNVTG-YVLGEHGSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRKGW 227 (307)
T ss_pred HHHHHHHHHhCCCcccEEE-EEEecCCCceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHccCe
Confidence 9999999999999999997 899999999999999999999999998752 2345678999999999987654443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=398.17 Aligned_cols=234 Identities=51% Similarity=0.748 Sum_probs=210.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
.||+||||+|+||+++++.|+.++++++++.+.|+|+|++.++++++|+++||.|+.+++...++++++++++++|||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 48999998899999999999999999977788899988765448899999999999866666667777899999999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R~ 255 (337)
|+++|.||+||++|.|++..|++|++++++.|+++|+|++++|++|||+|+||+++++.++.+|+ |+||+ |.|||+|+
T Consensus 81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~vig~-t~LDs~R~ 159 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKNAPNLPPKNFTAL-TRLDHNRA 159 (323)
T ss_pred EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHHHHHH
Confidence 99999999999999999999999999999999999559999999999999999999999954677 67777 99999999
Q ss_pred HHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhh---hhcccchHHHHHHHHhccCcccceeheeee
Q 019713 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEII---KDHKWLEEGFTETIQKVRLVDNFTLILFVM 331 (337)
Q Consensus 256 ~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i---~~~~~~~~e~~~~v~~~g~~~~~~l~~~~~ 331 (337)
|++||++++++|++|++++||||||++|+|+||+++|+|.|+.++. .+++|..++|.++++++|++.-...++.+|
T Consensus 160 r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~kg~t~~ 238 (323)
T cd00704 160 KAQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKRGASSA 238 (323)
T ss_pred HHHHHHHhCcCHHHceeeeEEecccCceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhccCcchh
Confidence 9999999999999998778999999999999999999999999875 344677889999999999988665555444
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=397.42 Aligned_cols=227 Identities=50% Similarity=0.731 Sum_probs=207.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEEE
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVI 177 (337)
||+||||+|+||+++++.|+.+++++.++++.|+|+|++.+.++++|+++||.|+.+++...+..+++++++++|||+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 69999977999999999999999996434567888888777778999999999998666555555556799999999999
Q ss_pred EecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEEecCchhHHHHHH
Q 019713 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKC 257 (337)
Q Consensus 178 itag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~LDs~R~~~ 257 (337)
+++|.|+++|++|.+++..|++|+++++++|+++++|++++|++|||+|+||++++++++++|+++||+||.|||+|+|+
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~~~~~vig~gt~LDs~R~r~ 160 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALA 160 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCcceEEEeeehHHHHHHH
Confidence 99999999999999999999999999999999996699999999999999999999999888889999999999999999
Q ss_pred HHHHHhCCCcccccceEEEeccCCCcccccccceEc-C---eehhhhhhhcccchHHHHHHHHhccCcccc
Q 019713 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIN-G---LPVKEIIKDHKWLEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 258 ~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~-G---~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~ 324 (337)
+||+++|+++++|++++||||||++|||+||+++|+ | +|+.+++.+++|+.++|.++++++|++...
T Consensus 161 ~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~ 231 (324)
T TIGR01758 161 QVAERAGVPVSDVKNVIIWGNHSSTQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIR 231 (324)
T ss_pred HHHHHhCCChhhceEeEEEECCCCCcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHh
Confidence 999999999999987799999999999999999999 9 999999877667788999999999987755
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=386.79 Aligned_cols=242 Identities=17% Similarity=0.259 Sum_probs=203.8
Q ss_pred CCccceeeeeee-ccchhhhhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 72 NDCYGVFCLTYD-LKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 72 ~~~~gv~~~~~~-~~~~~~~~~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
+.-|++||.... ..+....+..++.+||+|||| |+||+++|+.|+..++++| + +|+| .++++++|+++||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~m~~~~~~KI~IIGa-G~VG~~~a~~l~~~~l~~e---l--~LiD--i~~~~~~g~a~DL~ 83 (350)
T PLN02602 12 PGGLDLSQAFFKPIHNSSPPSPTRRHTKVSVVGV-GNVGMAIAQTILTQDLADE---L--ALVD--VNPDKLRGEMLDLQ 83 (350)
T ss_pred cchhhhhhhhhhcccccccccccCCCCEEEEECC-CHHHHHHHHHHHhCCCCCE---E--EEEe--CCCchhhHHHHHHH
Confidence 334668887766 444432121122379999995 9999999999999999865 4 4544 46789999999999
Q ss_pred hhccCCcccEEEec-CcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHH
Q 019713 151 DSLFPLLREVKIGI-NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (337)
Q Consensus 151 d~~~~~~~~v~i~t-~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t 229 (337)
|+. ++...+.++. ++|++++|||+||+++|.||+|||+|.|++.+|++|++++++.|+++ +|++++|++|||+|++|
T Consensus 84 ~~~-~~~~~~~i~~~~dy~~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNPvdv~t 161 (350)
T PLN02602 84 HAA-AFLPRTKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNPVDVLT 161 (350)
T ss_pred hhh-hcCCCCEEEeCCCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCchHHHH
Confidence 998 4443355553 57999999999999999999999999999999999999999999998 79999999999999999
Q ss_pred HHHHHHCCCCCC-CeEEecCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhc--cc
Q 019713 230 LICLKNAPSIPA-KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--KW 306 (337)
Q Consensus 230 ~i~~k~s~~~p~-kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~--~~ 306 (337)
+++++++ ++|+ |+||+||.||++|++++||+++|+++++|++ +||||||++|||+||+++|+|+|+.+++... .+
T Consensus 162 ~~~~k~s-g~p~~rviG~gt~LDs~R~r~~lA~~l~v~~~~V~~-~ViGeHGds~vp~wS~~~i~G~pl~~~~~~~~~~~ 239 (350)
T PLN02602 162 YVAWKLS-GFPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQA-YIVGEHGDSSVALWSSVSVGGVPVLSFLEKQQIAY 239 (350)
T ss_pred HHHHHHh-CCCHHHEEeecchHHHHHHHHHHHHHhCCCccceee-eEEecCCCceEeeeeeeeECCEEHHHHhhccCCcc
Confidence 9999999 4887 7889999999999999999999999999997 8999999999999999999999999987542 11
Q ss_pred c---hHHHHHHHHhccCcccce
Q 019713 307 L---EEGFTETIQKVRLVDNFT 325 (337)
Q Consensus 307 ~---~~e~~~~v~~~g~~~~~~ 325 (337)
+ .+++.++++++|++.-..
T Consensus 240 ~~~~~~~i~~~v~~~g~eIi~~ 261 (350)
T PLN02602 240 EKETLEEIHRAVVDSAYEVIKL 261 (350)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc
Confidence 1 457899999999887443
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=380.37 Aligned_cols=216 Identities=24% Similarity=0.288 Sum_probs=194.9
Q ss_pred EEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEEEEec
Q 019713 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIG 180 (337)
Q Consensus 101 IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVIita 180 (337)
|||| |+||+++|+.|+.+++++| +. |+ |.++++++|+++||+|+.+.+..+++++.++|++++|||+||+++
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~e---l~--L~--Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVita 72 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADE---IV--LI--DINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITA 72 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCE---EE--EE--eCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECC
Confidence 6895 9999999999999999865 44 44 456789999999999998666566778788999999999999999
Q ss_pred ccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHHHHHHH
Q 019713 181 AKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAKCQL 259 (337)
Q Consensus 181 g~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R~~~~l 259 (337)
|.||+|||+|.|++.+|++|++++++.|+++ +|++++|++|||+|+||+++++++ ++|+ |+||+||.||++|+++++
T Consensus 73 g~~rk~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d~~t~~~~~~s-g~p~~~viG~gt~LDs~R~~~~l 150 (299)
T TIGR01771 73 GAPQKPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNPVDILTYVAWKLS-GFPKNRVIGSGTVLDTARLRYLL 150 (299)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHh-CCCHHHEEeccchHHHHHHHHHH
Confidence 9999999999999999999999999999998 799999999999999999999998 6877 789999999999999999
Q ss_pred HHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhh----cccchHHHHHHHHhccCcccceeh
Q 019713 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD----HKWLEEGFTETIQKVRLVDNFTLI 327 (337)
Q Consensus 260 A~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~----~~~~~~e~~~~v~~~g~~~~~~l~ 327 (337)
|+++|+++.+|+. +||||||++|+|+||+++|+|+|+.+++.+ ..|..+++.++++++|++.-...+
T Consensus 151 a~~l~v~~~~V~~-~v~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kG 221 (299)
T TIGR01771 151 AEKLGVDPQSVHA-YIIGEHGDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRKG 221 (299)
T ss_pred HHHhCcCcCeEEE-EEEecCCCceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999996 899999999999999999999999998754 134567899999999998755444
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-49 Score=379.46 Aligned_cols=221 Identities=22% Similarity=0.317 Sum_probs=197.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d 172 (337)
.+..+||+|||| |+||+++++.|+..+++++ |+|+ |.++++++|++|||+|+. ++..++.+++++|++++|
T Consensus 3 ~~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~e-----l~L~--D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~~~~~~ 73 (315)
T PRK00066 3 KKQHNKVVLVGD-GAVGSSYAYALVNQGIADE-----LVII--DINKEKAEGDAMDLSHAV-PFTSPTKIYAGDYSDCKD 73 (315)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhcCCCCE-----EEEE--eCCCchhHHHHHHHHhhc-cccCCeEEEeCCHHHhCC
Confidence 345689999996 9999999999999999764 4454 457789999999999998 444567777889999999
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchh
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LD 251 (337)
||+||+++|.||+|||+|.|++..|++|++++++.++++ +|++++|++|||+|++|+++++++ ++|+ |+||+||.||
T Consensus 74 adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~-~~~~~vivvsNP~d~~~~~~~k~s-g~p~~~viG~gt~LD 151 (315)
T PRK00066 74 ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMAS-GFDGIFLVASNPVDILTYATWKLS-GFPKERVIGSGTSLD 151 (315)
T ss_pred CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCcHHHHHHHHHHHh-CCCHHHEeecCchHH
Confidence 999999999999999999999999999999999999999 799999999999999999999998 5887 6889999999
Q ss_pred HHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccc----hHHHHHHHHhccCcccce
Q 019713 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKVRLVDNFT 325 (337)
Q Consensus 252 s~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~----~~e~~~~v~~~g~~~~~~ 325 (337)
++|+++.+|+++|+++++|++ +||||||++|+|+||+++|+|+|+.+++.+..|. .+++.++++++|++.-..
T Consensus 152 s~R~~~~la~~l~v~~~~V~~-~viGeHG~s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~ 228 (315)
T PRK00066 152 SARFRYMLSEKLDVDPRSVHA-YIIGEHGDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEK 228 (315)
T ss_pred HHHHHHHHHHHhCCCcccEEE-EEEecCCCcceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999997 8999999999999999999999999998765554 347899999988876443
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-49 Score=381.47 Aligned_cols=230 Identities=54% Similarity=0.810 Sum_probs=207.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
++.||+||||+|+||+++++.|+.+++++.++...|+|+|++.+.++++|+++|+.|+.+++..++++..+.+++++|||
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aD 80 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVD 80 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCC
Confidence 46899999988999999999999999986333456777777656677899999999988666566766655579999999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEEecCchhHHH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENR 254 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~LDs~R 254 (337)
+||++||.|+++|++|.+++..|++|++++++.|+++++|++++|++|||+|+||+++++.++++|+++||+||.||++|
T Consensus 81 iVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~~~~~~~~~ig~gt~LDs~R 160 (325)
T cd01336 81 VAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNR 160 (325)
T ss_pred EEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHHHcCCCCHHHEEeeehHHHHH
Confidence 99999999999999999999999999999999999996689999999999999999999998789887799999999999
Q ss_pred HHHHHHHHhCCCcccccceEEEeccCCCcccccccceEc----CeehhhhhhhcccchHHHHHHHHhccCcccc
Q 019713 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIN----GLPVKEIIKDHKWLEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 255 ~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~----G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~ 324 (337)
++++||+++++++.+|++.+||||||++|||+||+++|+ |+|+.+++.++.|+.+++.++++++|++.-.
T Consensus 161 ~r~~la~~l~v~~~~v~~~~V~GeHG~s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~ 234 (325)
T cd01336 161 AKSQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIK 234 (325)
T ss_pred HHHHHHHHhCcChhhceEeEEEEcCCCCeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHHH
Confidence 999999999999999987679999999999999999999 9999999877668789999999999998755
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-49 Score=377.45 Aligned_cols=221 Identities=20% Similarity=0.249 Sum_probs=192.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~~eal~dA 173 (337)
+.+||+|||| |+||+++|+.|+.+++..| |+|+| .++++++|+++||+|+. ++.....+. +++|++++||
T Consensus 2 ~~~Ki~IiGa-G~VG~~~a~~l~~~~~~~e-----l~LiD--~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~~~~a 72 (312)
T cd05293 2 PRNKVTVVGV-GQVGMACAISILAKGLADE-----LVLVD--VVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSVTANS 72 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCE-----EEEEe--CCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHHhCCC
Confidence 3469999995 9999999999999999764 44554 45689999999999998 333212333 4689999999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs 252 (337)
|+||+++|.|++|||+|+|++.+|++|++++++.|+++ +|++++|++|||+|++|+++++++ ++|+ |+||+||.||+
T Consensus 73 divvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d~~t~~~~k~s-g~p~~~viG~gt~Ld~ 150 (312)
T cd05293 73 KVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPVDIMTYVAWKLS-GLPKHRVIGSGCNLDS 150 (312)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChHHHHHHHHHHHh-CCCHHHEEecCchHHH
Confidence 99999999999999999999999999999999999999 799999999999999999999998 6776 78999999999
Q ss_pred HHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhh-----cccchHHHHHHHHhccCcccceeh
Q 019713 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD-----HKWLEEGFTETIQKVRLVDNFTLI 327 (337)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~-----~~~~~~e~~~~v~~~g~~~~~~l~ 327 (337)
+|+++++|+++|+++.+|++ +||||||++|||+||+++|+|+|+.+++.. +....+++.++++++||+.-...+
T Consensus 151 ~R~~~~la~~l~v~~~~v~~-~v~GeHG~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg 229 (312)
T cd05293 151 ARFRYLIAERLGVAPSSVHG-WIIGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKG 229 (312)
T ss_pred HHHHHHHHHHhCCChhhEEE-EEeecCCCCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999996 899999999999999999999999998632 111247899999999998765443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN00135 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-49 Score=377.17 Aligned_cols=208 Identities=43% Similarity=0.657 Sum_probs=190.7
Q ss_pred HHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEEEEecccCCCCCCchhhhHH
Q 019713 116 LAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLD 195 (337)
Q Consensus 116 L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~ 195 (337)
|++|++||.++++.|+|+|++.++++++|++|||.|+.+++...+++++++|++++|||+||+++|.||+||++|.+++.
T Consensus 2 ~~~g~~~g~~~~~~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~ 81 (309)
T PLN00135 2 IARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMS 81 (309)
T ss_pred cccccccCCCCeEEEEEecCcccccchhhHHHHHHhhhHHhcCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHH
Confidence 57899999889999999988777799999999999998666556666566699999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEEecCchhHHHHHHHHHHHhCCCcccccceEE
Q 019713 196 INGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275 (337)
Q Consensus 196 ~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V 275 (337)
.|++|++++++.|+++++|++++|++|||+|+||+++++.++.+++|+||+||.||++|+|++||+++|+++++|+++||
T Consensus 82 ~N~~I~~~i~~~i~~~~~p~aivivvsNPvDv~t~~~~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V 161 (309)
T PLN00135 82 KNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVII 161 (309)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCCcHHHHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEE
Confidence 99999999999999965899999999999999999999999655569999999999999999999999999999965699
Q ss_pred EeccCCCcccccccceE----cCeehhhhhhhcccchHHHHHHHHhccCccc
Q 019713 276 WGNHSTTQVPDFLNARI----NGLPVKEIIKDHKWLEEGFTETIQKVRLVDN 323 (337)
Q Consensus 276 ~GnHG~t~vp~~S~a~V----~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~ 323 (337)
|||||++|||+||+++| +|+|+.+++.+++|+.+++.++++++|++.-
T Consensus 162 lGeHG~s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii 213 (309)
T PLN00135 162 WGNHSSTQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAII 213 (309)
T ss_pred EEcCCCceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999876666778999999999999773
|
|
| >TIGR01756 LDH_protist lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-48 Score=370.48 Aligned_cols=213 Identities=36% Similarity=0.529 Sum_probs=187.5
Q ss_pred HHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEEEEecccCCCCCCchhh
Q 019713 113 LFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAG 192 (337)
Q Consensus 113 a~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVIitag~prk~g~~R~d 192 (337)
.+.|++|++|| +++|.|+|+|++.++++++|++|||.|+.++......++++.+++++|||+||+|+|.||+|||+|.|
T Consensus 2 ~~~~~~g~~~g-~~~~~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~d 80 (313)
T TIGR01756 2 SHWIANGDLYG-NRPVCLHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRAD 80 (313)
T ss_pred cceeccCcccC-CCeEEEEEecCCCccchhHhHHHHHHHhccccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHH
Confidence 46788999999 89999999999888899999999999998444333344444447999999999999999999999999
Q ss_pred hHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHH-HHCCCCCCCeEEecCchhHHHHHHHHHHHhCCCccccc
Q 019713 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL-KNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271 (337)
Q Consensus 193 ll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~-k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~ 271 (337)
++..|++|++++++.|++++.|+++||++|||+|+||++++ +.+ ++|+++||+||.|||+|++++||++++++|++|+
T Consensus 81 ll~~N~~I~~~i~~~i~~~a~~~~ivivvtNPvDv~t~v~~~~~s-g~p~~vig~gt~LDsaR~r~~la~~l~v~~~~V~ 159 (313)
T TIGR01756 81 LLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLHAP-KLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIY 159 (313)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCchHHHHHHHHHHcC-CCCHHHEEecccHHHHHHHHHHHHHhCcChhhee
Confidence 99999999999999999996677999999999999999995 654 8998899999999999999999999999999998
Q ss_pred ceEEEeccCCCcccccccceE--cCeehhhh--hhhcccchHHHHHHHHhccCcccceehe
Q 019713 272 NMTIWGNHSTTQVPDFLNARI--NGLPVKEI--IKDHKWLEEGFTETIQKVRLVDNFTLIL 328 (337)
Q Consensus 272 ~v~V~GnHG~t~vp~~S~a~V--~G~pl~e~--i~~~~~~~~e~~~~v~~~g~~~~~~l~~ 328 (337)
+.+||||||++|||+||+++| +|.|+.++ + +++|..+++.++++++|++.-...++
T Consensus 160 ~~~V~GeHG~s~vp~~S~~~V~~~G~~~~~~~~~-~~~~~~~~i~~~v~~~g~~Ii~~kg~ 219 (313)
T TIGR01756 160 HVVVWGNHAESMVADLTHAEFTKNGKHQKVFDEL-CRDYPEPDFFEVIAQRAWKILEMRGF 219 (313)
T ss_pred eeEEEECCCCceeecccccEEecCCeehhHhhhc-CcHhHHHHHHHHHHHHHHHHHhCcCC
Confidence 767999999999999999999 99997654 4 23477889999999999988554443
|
This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-47 Score=365.03 Aligned_cols=218 Identities=23% Similarity=0.340 Sum_probs=194.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
+||+|||+ |.||+++++.|+..++..+ |.| + |+++++++++++||+|+.......+.+..+++++++|||+|
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~e---i~l--~--D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIV 72 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADE---LVL--I--DINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIV 72 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCE---EEE--E--eCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEE
Confidence 38999995 9999999999999998654 544 3 55678899999999998754444556666788999999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R~ 255 (337)
|+++|.||+|||+|.|++.+|++|++++++.|+++ +|+++||++|||+|+||+++++++ ++|+ |+||+||.||++|+
T Consensus 73 Iitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~-~~~~~vivvsNP~d~~~~~~~~~~-g~p~~~v~g~gt~LDs~R~ 150 (306)
T cd05291 73 VITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKAS-GFDGIFLVASNPVDVITYVVQKLS-GLPKNRVIGTGTSLDTARL 150 (306)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHh-CcCHHHEeeccchHHHHHH
Confidence 99999999999999999999999999999999998 799999999999999999999986 7876 77999999999999
Q ss_pred HHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccc---hHHHHHHHHhccCcccce
Q 019713 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL---EEGFTETIQKVRLVDNFT 325 (337)
Q Consensus 256 ~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~---~~e~~~~v~~~g~~~~~~ 325 (337)
+++||+++|+++.+|++ +||||||++|+|+||+++|+|+|+.+++.+..|. .+++.++++++|+++-..
T Consensus 151 ~~~la~~l~v~~~~v~~-~V~G~Hg~s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~ 222 (306)
T cd05291 151 RRALAEKLNVDPRSVHA-YVLGEHGDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIING 222 (306)
T ss_pred HHHHHHHHCCCcccceE-EEEecCCCceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999997 9999999999999999999999999998765564 567899999998876443
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-46 Score=357.14 Aligned_cols=213 Identities=24% Similarity=0.316 Sum_probs=192.2
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCcccccCCCcEEE
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEWAL 177 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~~eal~dADvVI 177 (337)
|+|||| |.||+++++.|+..+++++ +. |+ |.++++++|+++||+|+..++ ...++. ++++++++|||+||
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~e---l~--l~--D~~~~~~~g~~~DL~~~~~~~-~~~~i~~~~~~~~l~~aDiVI 71 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASE---LV--LV--DVNEEKAKGDALDLSHASAFL-ATGTIVRGGDYADAADADIVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCE---EE--EE--eCCccHHHHHHHhHHHhcccc-CCCeEEECCCHHHhCCCCEEE
Confidence 689995 9999999999999999865 44 44 456788999999999998553 333333 45689999999999
Q ss_pred EecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHHHH
Q 019713 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAK 256 (337)
Q Consensus 178 itag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R~~ 256 (337)
+++|.|++|||+|.+++.+|+++++++++.|+++ +|++++|++|||+|++|+++++++ ++|+ |+||+||.||++|++
T Consensus 72 itag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~-~p~~~viv~sNP~d~~~~~~~~~s-g~~~~kviG~gt~lDs~r~~ 149 (300)
T cd00300 72 ITAGAPRKPGETRLDLINRNAPILRSVITNLKKY-GPDAIILVVSNPVDILTYVAQKLS-GLPKNRVIGSGTLLDSARFR 149 (300)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccChHHHHHHHHHHHh-CcCHHHEEecCCcHHHHHHH
Confidence 9999999999999999999999999999999999 699999999999999999999998 5775 789999999999999
Q ss_pred HHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCccc
Q 019713 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDN 323 (337)
Q Consensus 257 ~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~ 323 (337)
+++|+++|+++.+|++ +|+||||++|+|+||+++|+|+|+.+++++.+|..+++.++++++|++.-
T Consensus 150 ~~la~~l~v~~~~v~~-~viGeHg~s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii 215 (300)
T cd00300 150 SLLAEKLDVDPQSVHA-YVLGEHGDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEII 215 (300)
T ss_pred HHHHHHhCCCcccEEE-EEEeccCCceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997 89999999999999999999999999988777888999999999998763
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-46 Score=357.48 Aligned_cols=213 Identities=25% Similarity=0.259 Sum_probs=180.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCc--ccccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INP--YELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~--~eal~dA 173 (337)
+||+||||+|+||+++|+.|+.+++..| |+|+|++ +++|++|||+|+..+ .++... .++ |++++||
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~e-----lvLiDi~----~a~g~alDL~~~~~~--~~i~~~~~~~~~y~~~~da 69 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSE-----LALYDIV----NTPGVAADLSHINTP--AKVTGYLGPEELKKALKGA 69 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcE-----EEEEecC----ccceeehHhHhCCCc--ceEEEecCCCchHHhcCCC
Confidence 5999999779999999999999999754 5566553 789999999998721 244432 222 8999999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhH----HHHHHHHCCCCCC-CeEEecC
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN----ALICLKNAPSIPA-KNFHALT 248 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~----t~i~~k~s~~~p~-kvIG~gT 248 (337)
|+||+|+|.||+|||+|+|++..|.+|++++++.|+++ +|++|+|++|||+|+| |+++++.+ ++|+ |+||+++
T Consensus 70 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvDv~~~i~t~~~~~~s-~~p~~rviG~~~ 147 (310)
T cd01337 70 DVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPVNSTVPIAAEVLKKAG-VYDPKRLFGVTT 147 (310)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchhhHHHHHHHHHHHhc-CCCHHHEEeeec
Confidence 99999999999999999999999999999999999999 7999999999999998 77888887 5776 7899976
Q ss_pred chhHHHHHHHHHHHhCCCcccccceEEEecc-CCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCccccee-
Q 019713 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNFTL- 326 (337)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnH-G~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~~l- 326 (337)
|||+|++++||+++|+++++|+ .+||||| |++|||+||++++. .++ .+ . ..+++.++++++||+.-..+
T Consensus 148 -LDs~R~~~~la~~l~v~~~~V~-~~v~GeHsGds~vp~~S~~~~~----~~~-~~-~-~~~~i~~~v~~~g~~Ii~~k~ 218 (310)
T cd01337 148 -LDVVRANTFVAELLGLDPAKVN-VPVIGGHSGVTILPLLSQCQPP----FTF-DQ-E-EIEALTHRIQFGGDEVVKAKA 218 (310)
T ss_pred -hHHHHHHHHHHHHhCcCHHHEE-EEEEecCCCCceeccccccccc----ccC-CH-H-HHHHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999 5999999 89999999999763 333 11 2 25789999999999887653
Q ss_pred --heeee
Q 019713 327 --ILFVM 331 (337)
Q Consensus 327 --~~~~~ 331 (337)
++-||
T Consensus 219 gkg~t~~ 225 (310)
T cd01337 219 GAGSATL 225 (310)
T ss_pred CCCCcch
Confidence 55444
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=340.71 Aligned_cols=227 Identities=19% Similarity=0.263 Sum_probs=193.3
Q ss_pred eeeeccchhhhhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCccc
Q 019713 80 LTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLRE 159 (337)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~ 159 (337)
+..++.++++ .+..||.|+|+ |+||.++|+.|..+++..| ++| + |.++++++|++|||+|.+ +++..
T Consensus 8 ~~~~~~~~~~----~~~~KItVVG~-G~VGmAca~siL~k~Lade---l~l--v--Dv~~dklkGE~MDLqH~s-~f~~~ 74 (332)
T KOG1495|consen 8 LIANSAEEKE----FKHNKITVVGV-GQVGMACAISILLKGLADE---LVL--V--DVNEDKLKGEMMDLQHGS-AFLST 74 (332)
T ss_pred hhhccccccc----ccCceEEEEcc-chHHHHHHHHHHHhhhhhc---eEE--E--ecCcchhhhhhhhhcccc-ccccC
Confidence 3444444444 23579999995 9999999999999999876 554 3 557789999999999988 55443
Q ss_pred EEEe-cCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCC
Q 019713 160 VKIG-INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPS 238 (337)
Q Consensus 160 v~i~-t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~ 238 (337)
-.+. ..||.+.+|+|+||+|+|...++|++|++++++|+.|||.+.+.|.+| +||+++|++|||+|+|||++||.+ +
T Consensus 75 ~~V~~~~Dy~~sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPVDilTYv~wKLS-g 152 (332)
T KOG1495|consen 75 PNVVASKDYSVSANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPVDILTYVTWKLS-G 152 (332)
T ss_pred CceEecCcccccCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCchHHHHHHHHHHc-C
Confidence 3333 348999999999999999988999999999999999999999999999 899999999999999999999998 6
Q ss_pred CCC-CeEEecCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhccc--c---hHHHH
Q 019713 239 IPA-KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW--L---EEGFT 312 (337)
Q Consensus 239 ~p~-kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~--~---~~e~~ 312 (337)
+|+ |+||.||.||++|||+.++++||++|.++++ +|+|||||+.+|.||.+.|.|.++.++.++-.. + .+|+.
T Consensus 153 fP~nRViGsGcnLDsaRFryLi~~~Lg~~pss~hg-wIiGEHGdSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eih 231 (332)
T KOG1495|consen 153 FPKNRVIGSGCNLDSARFRYLIGNRLGVHPSSCHG-WIIGEHGDSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIH 231 (332)
T ss_pred CcccceeccCcCccHHHHHHHHHHHhCCCcccceE-EEeeccCCccceecccccccceEHhHhChhhcCCCCHHHHHHHH
Confidence 887 8999999999999999999999999999996 999999999999999999999999998765221 1 13566
Q ss_pred HHHHhccCcc
Q 019713 313 ETIQKVRLVD 322 (337)
Q Consensus 313 ~~v~~~g~~~ 322 (337)
++|...+++.
T Consensus 232 K~v~~sayev 241 (332)
T KOG1495|consen 232 KQVVDSAYEV 241 (332)
T ss_pred HHHHHHHHHH
Confidence 6666666554
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-45 Score=349.71 Aligned_cols=206 Identities=25% Similarity=0.251 Sum_probs=175.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-Cc--ccccCCCc
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NP--YELFEDAE 174 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~~--~eal~dAD 174 (337)
||+||||+|+||+++|+.|+.+++..| |+|+|++. ++|++|||+|+.. ..++..++ ++ +++++|||
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~e-----lvL~Di~~----a~g~a~DL~~~~~--~~~i~~~~~~~~~~~~~~daD 69 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSE-----LSLYDIAG----AAGVAADLSHIPT--AASVKGFSGEEGLENALKGAD 69 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcE-----EEEecCCC----CcEEEchhhcCCc--CceEEEecCCCchHHHcCCCC
Confidence 799999779999999999999988754 55666543 6799999999762 23444322 33 89999999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh----HHHHHHHHCCCCCC-CeEEecCc
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT----NALICLKNAPSIPA-KNFHALTR 249 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~----~t~i~~k~s~~~p~-kvIG~gT~ 249 (337)
+||+++|.||+||++|+|++..|.+|++++++.|+++ +|++++|++|||+|+ +|+++++.+ ++|+ |+||+++
T Consensus 70 ivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPvDv~~~i~t~~~~~~s-g~p~~rViG~g~- 146 (312)
T TIGR01772 70 VVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPVNSTVPIAAEVLKKKG-VYDPNKLFGVTT- 146 (312)
T ss_pred EEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCchhhHHHHHHHHHHHhc-CCChHHEEeeec-
Confidence 9999999999999999999999999999999999999 799999999999998 888888887 6776 7899986
Q ss_pred hhHHHHHHHHHHHhCCCcccccceEEEeccCC-CcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccce
Q 019713 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNFT 325 (337)
Q Consensus 250 LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~-t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~~ 325 (337)
|||+|++++||+++|+++++|+. |||||||+ +|||+||++++ .++ +.++ ..+++.++++++||++-..
T Consensus 147 LDsaR~r~~la~~l~v~~~~v~~-~ViGeHg~~s~vp~~S~~~~--~~~---~~~~--~~~~i~~~v~~~g~~Ii~~ 215 (312)
T TIGR01772 147 LDIVRANTFVAELKGKDPMEVNV-PVIGGHSGETIIPLISQCPG--KVL---FTED--QLEALIHRIQNAGTEVVKA 215 (312)
T ss_pred chHHHHHHHHHHHhCCCHHHeEE-EEEEecCCCccccccccccc--cCC---CCHH--HHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999995 99999987 99999999984 333 2222 2578999999999987664
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=346.49 Aligned_cols=224 Identities=23% Similarity=0.328 Sum_probs=194.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCcccccCCCcE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEW 175 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~~eal~dADv 175 (337)
|||+|+||+|.+|+++++.|+.++++++ +.++|++.+.+++++.++|++|+.........++ ++++++++|||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~-----v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDi 75 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKE-----INLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDI 75 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCE-----EEEEECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCE
Confidence 6999999779999999999999998754 4455664455899999999999753332222332 345889999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHH
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R 254 (337)
||+++|.|+++|++|.+++..|+++++++++.|+++ +|+++||+++||+|++|++++++++ +|+ |+||+||.||++|
T Consensus 76 Viitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~-~~~~~viv~~npvd~~t~~~~~~~g-~~~~~viG~gt~LDs~R 153 (309)
T cd05294 76 VIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEF-APDTKILVVTNPVDVMTYKALKESG-FDKNRVFGLGTHLDSLR 153 (309)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCchHHHHHHHHHhcC-CCHHHEeeccchHHHHH
Confidence 999999999999999999999999999999999998 6999999999999999999999995 776 7899999999999
Q ss_pred HHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccceehe
Q 019713 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNFTLIL 328 (337)
Q Consensus 255 ~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~~l~~ 328 (337)
++++||+++++++.+|++ +|+||||++|||+||+++|+|+|+.+++..+.+..+++.++++++||+.....++
T Consensus 154 ~~~~la~~l~v~~~~v~~-~viGeHg~s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~kg~ 226 (309)
T cd05294 154 FKVAIAKHFNVHISEVHT-RIIGEHGDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLKGG 226 (309)
T ss_pred HHHHHHHHHCcChHHeEE-EEEecCCCceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999996 8999999999999999999999999987543456788999999999887554443
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=343.15 Aligned_cols=216 Identities=25% Similarity=0.330 Sum_probs=188.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~~eal~dA 173 (337)
+.+||+|||| |+||+++++.++..++ .+ + .|+|+ ++++++|+++|+.|+.........+. ++++++++||
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~---l--~L~Di--~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~~A 74 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNL-GD---V--VLYDV--IKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIKDS 74 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCC-Ce---E--EEEEC--CCccchhHHHHHhhhccccCCCeEEEeCCCHHHhCCC
Confidence 4569999996 9999999999999886 32 4 45544 55678899999999863332233443 4678899999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs 252 (337)
|+||+++|.|+++|++|.|++..|.++++++++.|+++ +|++|+|++|||+|++|+++++.+ ++|+ |+||+||.||+
T Consensus 75 DiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvsNP~di~t~~~~~~s-~~p~~rviG~gt~lds 152 (319)
T PTZ00117 75 DVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTNPLDCMVKVFQEKS-GIPSNKICGMAGVLDS 152 (319)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChHHHHHHHHHHhh-CCCcccEEEecchHHH
Confidence 99999999999999999999999999999999999999 799999999999999999999987 6875 88999999999
Q ss_pred HHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccc---hHHHHHHHHhccCcc
Q 019713 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL---EEGFTETIQKVRLVD 322 (337)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~---~~e~~~~v~~~g~~~ 322 (337)
+|++++||+++|+++++|+. +|+||||++|+|+||+++|+|+|+.+++++..|. .+++.++++++|++.
T Consensus 153 ~R~~~~la~~l~v~~~~v~~-~viGeHg~~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~i 224 (319)
T PTZ00117 153 SRFRCNLAEKLGVSPGDVSA-VVIGGHGDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEI 224 (319)
T ss_pred HHHHHHHHHHhCCCcccceE-EEeecCCCcEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999996 8999999999999999999999999998765564 356888999888875
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=340.58 Aligned_cols=217 Identities=24% Similarity=0.330 Sum_probs=192.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+|||+ |.||+++++.|+..++..+ +.| + |+++++++|.++|+.|+. ++..+..+.++++++++|||+|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~e---v~l--~--D~~~~~~~g~a~dl~~~~-~~~~~~~i~~~d~~~l~~aDiV 71 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASE---IVL--V--DINKAKAEGEAMDLAHGT-PFVKPVRIYAGDYADCKGADVV 71 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCE---EEE--E--ECCchhhhhHHHHHHccc-cccCCeEEeeCCHHHhCCCCEE
Confidence 58999995 9999999999999988654 544 3 556778899999999986 4444456667789999999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R~ 255 (337)
|++++.|+++|++|.+++.+|+++++++++.|+++ +|++++++++||+|++|+++++.+ ++|+ |+||+||.||++|+
T Consensus 72 iita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~-~~~giiiv~tNP~d~~~~~~~~~s-g~p~~~viG~gt~LDs~R~ 149 (308)
T cd05292 72 VITAGANQKPGETRLDLLKRNVAIFKEIIPQILKY-APDAILLVVTNPVDVLTYVAYKLS-GLPPNRVIGSGTVLDTARF 149 (308)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHHH-CcCHHHeecccchhhHHHH
Confidence 99999999999999999999999999999999999 699999999999999999999998 6877 78999999999999
Q ss_pred HHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhc--c---cchHHHHHHHHhccCcccce
Q 019713 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--K---WLEEGFTETIQKVRLVDNFT 325 (337)
Q Consensus 256 ~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~--~---~~~~e~~~~v~~~g~~~~~~ 325 (337)
+++||+++++++.+|++ +||||||++|+|+||+++|+|+|+.+++.+. . +..+++.++++++||+.-..
T Consensus 150 ~~~la~~~~v~~~~v~~-~viGeHg~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~ 223 (308)
T cd05292 150 RYLLGEHLGVDPRSVHA-YIIGEHGDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIER 223 (308)
T ss_pred HHHHHHHhCCCccceec-eeeccCCCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999996 8999999999999999999999999987542 1 33567899999999887443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=336.68 Aligned_cols=213 Identities=24% Similarity=0.337 Sum_probs=185.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCc--ccEEEecCcccccCCCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGINPYELFEDAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~--~~v~i~t~~~eal~dAD 174 (337)
+||+|||+ |.||+++|+.++..++. + |.| +|+ +++..+|.++|+.|...... .+++. ++++++++|||
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~---Vvl--vDi--~~~l~~g~a~d~~~~~~~~~~~~~i~~-t~d~~~~~~aD 71 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA-D---LVL--LDV--VEGIPQGKALDMYEASPVGGFDTKVTG-TNNYADTANSD 71 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC-e---EEE--EeC--CCChhHHHHHhhhhhhhccCCCcEEEe-cCCHHHhCCCC
Confidence 69999995 99999999999998874 2 544 444 56678889999988653222 23443 46778899999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~ 253 (337)
+||+++|.|+++|++|+|++..|.+++++++++|.++ +|++++|++|||+|+||+++++++ ++|+ |+||+||.|||+
T Consensus 72 iVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~-~p~~~iIv~tNP~di~t~~~~~~s-g~~~~rviG~g~~lds~ 149 (305)
T TIGR01763 72 IVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEH-SPNPIIVVVSNPLDAMTYVAWQKS-GFPKERVIGQAGVLDSA 149 (305)
T ss_pred EEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHHH-CcCHHHEEEeccchHHH
Confidence 9999999999999999999999999999999999998 799999999999999999999998 5776 889999999999
Q ss_pred HHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccc
Q 019713 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 254 R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~ 324 (337)
|+++.||+++++++++|+. +||||||++|+|+||+++|+|+|+.+++.++. .+++.++++++|++.-.
T Consensus 150 R~~~~la~~l~v~~~~v~~-~v~GeHg~s~~~~wS~~~i~g~~~~~~~~~~~--~~~l~~~v~~~g~~ii~ 217 (305)
T TIGR01763 150 RFRTFIAMELGVSVQDVTA-CVLGGHGDAMVPLVRYSTVAGIPVADLISAER--IAEIVERTRKGGGEIVN 217 (305)
T ss_pred HHHHHHHHHhCcCHHHeee-eEEecCCCcEEeeeeeeEECCEEHHHhcCHHH--HHHHHHHHHHHHHHHHH
Confidence 9999999999999999996 89999999999999999999999999875432 47889999988876643
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=336.75 Aligned_cols=221 Identities=21% Similarity=0.265 Sum_probs=190.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCcccccC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFE 171 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~~eal~ 171 (337)
|.+.+||+|||| |.||+++++.++..++. .++|+|+ ++++++|.++|+.|.........++. ++++++++
T Consensus 3 ~~~~~KI~IIGa-G~vG~~ia~~la~~gl~------~i~LvDi--~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~ 73 (321)
T PTZ00082 3 MIKRRKISLIGS-GNIGGVMAYLIVLKNLG------DVVLFDI--VKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIA 73 (321)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCC------eEEEEeC--CCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhC
Confidence 456689999995 99999999999998873 1445544 55677899999999763332233443 46789999
Q ss_pred CCcEEEEecccCCCCCC-----chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEE
Q 019713 172 DAEWALLIGAKPRGPGM-----ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (337)
Q Consensus 172 dADvVIitag~prk~g~-----~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG 245 (337)
|||+||+++|.|++||+ +|.+++..|.+++++++++|+++ +|++++|++|||+|++++++++.+ ++|+ |+||
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~-~p~a~~iv~sNP~di~t~~~~~~s-g~p~~rviG 151 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKY-CPNAFVIVITNPLDVMVKLLQEHS-GLPKNKVCG 151 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHhc-CCChhhEEE
Confidence 99999999999999999 99999999999999999999999 699999999999999999999988 6774 8899
Q ss_pred ecCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhccc---chHHHHHHHHhccCcc
Q 019713 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW---LEEGFTETIQKVRLVD 322 (337)
Q Consensus 246 ~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~---~~~e~~~~v~~~g~~~ 322 (337)
+||.||++|+++.||+++|+++++|+. +|+||||++|||+||+++|+|.|+.++++...+ ..+++.++++++||+.
T Consensus 152 lgt~lds~R~~~~la~~l~v~~~~v~~-~viGeHg~s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i 230 (321)
T PTZ00082 152 MAGVLDSSRLRTYIAEKLGVNPRDVHA-SVIGAHGDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEI 230 (321)
T ss_pred ecCcccHHHHHHHHHHHhCCCccccee-eEEecCCCceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 899999999999999999999999998754212 2467889999999877
Q ss_pred cce
Q 019713 323 NFT 325 (337)
Q Consensus 323 ~~~ 325 (337)
...
T Consensus 231 ~~~ 233 (321)
T PTZ00082 231 VDL 233 (321)
T ss_pred Hhh
Confidence 553
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=329.88 Aligned_cols=215 Identities=23% Similarity=0.336 Sum_probs=186.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCcccccCCCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~~eal~dAD 174 (337)
|+||+|||| |.||+++++.++..++. + +. |+|+ ++++++|.++|+.|.........+++ ++++++++|||
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-e---v~--L~D~--~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aD 72 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-D---VV--LFDI--VEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSD 72 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-E---EE--EEEC--CCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCC
Confidence 579999996 99999999999988764 3 44 4444 66788999999998764333333443 45678999999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~ 253 (337)
+||+++|.|+++|++|.+++.+|+++++++++.|+++ +|++++|++|||+|++|+++++++ ++|+ |+||+||.||++
T Consensus 73 iVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~-~~~~~viv~tNP~d~~~~~~~~~s-~~~~~~viG~gt~lds~ 150 (307)
T PRK06223 73 VVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKY-APDAIVIVVTNPVDAMTYVALKES-GFPKNRVIGMAGVLDSA 150 (307)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHHh-CCCcccEEEeCCCcHHH
Confidence 9999999999999999999999999999999999998 699999999999999999999998 6775 789999999999
Q ss_pred HHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccc
Q 019713 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 254 R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~ 324 (337)
|++++||+++++++++|++ +|+||||++++|+||+++|+|.|+.+++. ++| .+++.+.++++|++.-.
T Consensus 151 r~~~~la~~l~v~~~~v~~-~viGehg~s~~p~~S~~~v~g~~~~~~~~-~~~-~~~l~~~v~~~~~~ii~ 218 (307)
T PRK06223 151 RFRTFIAEELNVSVKDVTA-FVLGGHGDSMVPLVRYSTVGGIPLEDLLS-KEK-LDEIVERTRKGGAEIVG 218 (307)
T ss_pred HHHHHHHHHhCcChhhCcc-cEEcCCCCcceEchhhCEECCEEHHHhCC-hHH-HHHHHHHHHHHHHHHHh
Confidence 9999999999999999996 89999999999999999999999999853 344 46788888888876643
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=324.86 Aligned_cols=211 Identities=28% Similarity=0.269 Sum_probs=180.6
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec--Cc-cc
Q 019713 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NP-YE 168 (337)
Q Consensus 92 ~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t--~~-~e 168 (337)
+..+|.||+||||+|+||+++++.|+..++..+ |+|+|+ ++++|+++||.|+.. ...+...+ ++ ++
T Consensus 4 ~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~e-----lvL~Di----~~~~g~a~Dl~~~~~--~~~v~~~td~~~~~~ 72 (321)
T PTZ00325 4 SALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSE-----LSLYDI----VGAPGVAADLSHIDT--PAKVTGYADGELWEK 72 (321)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCE-----EEEEec----CCCcccccchhhcCc--CceEEEecCCCchHH
Confidence 456788999999779999999999998887654 556665 467899999999773 22343222 23 89
Q ss_pred ccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHH----HHCCCCCC-Ce
Q 019713 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL----KNAPSIPA-KN 243 (337)
Q Consensus 169 al~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~----k~s~~~p~-kv 243 (337)
+++|||+||+++|.|++||++|.+++..|++++++++++|+++ +|+++|+++|||+|+++++++ +.+ ++|+ ++
T Consensus 73 ~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv~~~~~~~~~~~~s-g~p~~~v 150 (321)
T PTZ00325 73 ALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNSTVPIAAETLKKAG-VYDPRKL 150 (321)
T ss_pred HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHhhhhhcc-CCChhhe
Confidence 9999999999999999999999999999999999999999998 899999999999999999995 666 5766 78
Q ss_pred EEecCchhHHHHHHHHHHHhCCCcccccceEEEeccCC-CcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcc
Q 019713 244 FHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVD 322 (337)
Q Consensus 244 IG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~-t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~ 322 (337)
||+++ |||+|++++||+++|++|++|+. |||||||+ +|||+||++ |.|+.+ + ..+++.++++++||++
T Consensus 151 iG~g~-LDs~R~r~~la~~l~v~~~~V~~-~VlGeHGd~s~v~~~S~~---g~~l~~----~--~~~~i~~~v~~~g~~I 219 (321)
T PTZ00325 151 FGVTT-LDVVRARKFVAEALGMNPYDVNV-PVVGGHSGVTIVPLLSQT---GLSLPE----E--QVEQITHRVQVGGDEV 219 (321)
T ss_pred eechh-HHHHHHHHHHHHHhCcChhheEE-EEEeecCCcccccchhcc---CCCCCH----H--HHHHHHHHHHHHHHHH
Confidence 99986 99999999999999999999995 99999999 899999999 888742 1 2567999999999887
Q ss_pred ccee
Q 019713 323 NFTL 326 (337)
Q Consensus 323 ~~~l 326 (337)
....
T Consensus 220 i~~k 223 (321)
T PTZ00325 220 VKAK 223 (321)
T ss_pred Hhcc
Confidence 6543
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=318.19 Aligned_cols=212 Identities=25% Similarity=0.346 Sum_probs=183.5
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCcccccCCCcEEE
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEWAL 177 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~~eal~dADvVI 177 (337)
|+|||| |.||+++++.++..++. + |. |+|+ ++++++|.++|+.|.........++. ++++++++|||+||
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~-e---V~--L~Di--~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVI 71 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG-D---VV--LLDI--VEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc-E---EE--EEeC--CCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEE
Confidence 689996 99999999999988874 3 44 4555 45688899999998753332223332 34589999999999
Q ss_pred EecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHHHH
Q 019713 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAK 256 (337)
Q Consensus 178 itag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R~~ 256 (337)
+++|.|+++|++|.+++.+|.+++++++++|+++ +|++++|++|||+|++|+++++++ ++|+ |+||+||.||++|++
T Consensus 72 it~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~-~p~~~iIv~sNP~di~t~~~~~~s-~~~~~rviGlgt~lds~r~~ 149 (300)
T cd01339 72 ITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKY-APNAIVIVVTNPLDVMTYVAYKAS-GFPRNRVIGMAGVLDSARFR 149 (300)
T ss_pred EecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHHh-CCCHHHEEEecchHHHHHHH
Confidence 9999999999999999999999999999999998 699999999999999999999998 6765 889999999999999
Q ss_pred HHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccc
Q 019713 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 257 ~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~ 324 (337)
.+||+++++++++|++ +|+||||++|+|+||+++|+|.|+.+++.+++ .+++.++++++|++.-.
T Consensus 150 ~~la~~l~v~~~~v~~-~v~G~hg~~~~~~~s~~~v~g~~~~~~~~~~~--~~~~~~~v~~~~~~ii~ 214 (300)
T cd01339 150 YFIAEELGVSVKDVQA-MVLGGHGDTMVPLPRYSTVGGIPLTELITKEE--IDEIVERTRNGGAEIVN 214 (300)
T ss_pred HHHHHHhCCCccceEE-EEEeCCCCcceecceecEECCEEHHHhcChHH--HHHHHHHHHHHHHHHHh
Confidence 9999999999999996 89999999999999999999999999875543 47888888888877644
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=320.58 Aligned_cols=208 Identities=26% Similarity=0.289 Sum_probs=176.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCc---ccccCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP---YELFED 172 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~---~eal~d 172 (337)
+.||+||||+|+||+++++.|+.++++++ |+|+|++. ++|+++||.|+.... .+...+++ +++++|
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~e-----l~L~Di~~----~~g~a~Dl~~~~~~~--~i~~~~~~~d~~~~l~~ 86 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSE-----LHLYDIAN----TPGVAADVSHINTPA--QVRGFLGDDQLGDALKG 86 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCE-----EEEEecCC----CCeeEchhhhCCcCc--eEEEEeCCCCHHHHcCC
Confidence 46999999779999999999999999864 55666543 789999999987432 33321233 899999
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch----hHHHHHHHHCCCCCC-CeEEec
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN----TNALICLKNAPSIPA-KNFHAL 247 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd----~~t~i~~k~s~~~p~-kvIG~g 247 (337)
||+||+++|.|++||++|.|++..|.+|++++++.++++ +|+++||++|||+| ++++++++.+ ++|+ ++||++
T Consensus 87 aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~-~p~aivivvSNPvD~~~~i~t~~~~~~s-~~p~~~viG~~ 164 (323)
T PLN00106 87 ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKH-CPNALVNIISNPVNSTVPIAAEVLKKAG-VYDPKKLFGVT 164 (323)
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCCccccHHHHHHHHHHcC-CCCcceEEEEe
Confidence 999999999999999999999999999999999999999 69999999999999 8999889987 5665 788998
Q ss_pred CchhHHHHHHHHHHHhCCCcccccceEEEeccCC-CcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccce
Q 019713 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNFT 325 (337)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~-t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~~ 325 (337)
+ ||++|+++++|+++|+++.+|+. +|+||||+ +|||+||++++. .+ +.++ ..+++.++++++||+....
T Consensus 165 ~-LDs~Rl~~~lA~~lgv~~~~V~~-~ViGeHg~~s~vp~~S~~~~~----~~-~~~~--~~~~i~~~v~~~g~~Ii~~ 234 (323)
T PLN00106 165 T-LDVVRANTFVAEKKGLDPADVDV-PVVGGHAGITILPLLSQATPK----VS-FTDE--EIEALTKRIQNGGTEVVEA 234 (323)
T ss_pred c-chHHHHHHHHHHHhCCChhheEE-EEEEeCCCccEeeehhcceec----cc-CCHH--HHHHHHHHHHHHHHHHHhC
Confidence 6 99999999999999999999996 99999965 999999999653 23 2111 2568999999999987664
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=315.17 Aligned_cols=208 Identities=25% Similarity=0.266 Sum_probs=174.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCc-ccccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INP-YELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~-~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~-~eal~dA 173 (337)
|||+||||+|.||+++++.|.. .+... ++.|+|. + +..+|+++|++|.. ....+... .++ +++++|+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~-----el~L~d~--~-~~~~g~alDl~~~~--~~~~i~~~~~~d~~~~l~~~ 70 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGS-----ELSLYDI--A-PVTPGVAVDLSHIP--TAVKIKGFSGEDPTPALEGA 70 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCcc-----EEEEEec--C-CCCcceehhhhcCC--CCceEEEeCCCCHHHHcCCC
Confidence 6999999889999999999865 34432 3455554 3 23678899999852 11233321 234 7999999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHH----HHCCCCCC-CeEEecC
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL----KNAPSIPA-KNFHALT 248 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~----k~s~~~p~-kvIG~gT 248 (337)
|+||+++|.|+++|++|.+++..|+++++++++.|+++ +|+++|+++|||+|+||++++ +++ ++|+ |+||+|+
T Consensus 71 DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D~~t~~~~~~~~~~s-g~p~~rvig~~~ 148 (312)
T PRK05086 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVNTTVAIAAEVLKKAG-VYDKNKLFGVTT 148 (312)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchHHHHHHHHHHHHHhc-CCCHHHEEeeec
Confidence 99999999999999999999999999999999999999 799999999999999999987 776 6776 7899986
Q ss_pred chhHHHHHHHHHHHhCCCcccccceEEEeccCC-CcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCccccee
Q 019713 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNFTL 326 (337)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~-t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~~l 326 (337)
|||+|+++.||+++|+++++|+ .+||||||+ +|||+||++ +|.|+.+ + ..+++.++++++||++-...
T Consensus 149 -Lds~R~~~~ia~~l~~~~~~v~-~~v~GeHg~~s~~p~~S~~--~g~~l~~----~--~~~~i~~~v~~~g~~ii~~k 217 (312)
T PRK05086 149 -LDVIRSETFVAELKGKQPGEVE-VPVIGGHSGVTILPLLSQV--PGVSFTE----Q--EVADLTKRIQNAGTEVVEAK 217 (312)
T ss_pred -HHHHHHHHHHHHHhCCChhheE-EEEEEecCCCceecccccc--CCccCCH----H--HHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999 499999976 999999999 8999843 1 25679999999999876544
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=298.84 Aligned_cols=184 Identities=39% Similarity=0.525 Sum_probs=163.7
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC-cccEEEecCcccccCCCcEEE
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAEWAL 177 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~t~~~eal~dADvVI 177 (337)
|+||||+|.+|+++++.|+.++.. ....|.|+|+ +++++++.++|++|+..+. ..+++.++|.+++++|||+||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~---~~~el~L~D~--~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv 75 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVL---LAIELVLYDI--DEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVI 75 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCC---cceEEEEEeC--CcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEE
Confidence 689997699999999999998831 1234566655 5588999999999987554 346666555589999999999
Q ss_pred EecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHHHH
Q 019713 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAK 256 (337)
Q Consensus 178 itag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R~~ 256 (337)
+++|.|+++|++|.+++.+|++++++++++|+++ +|++|+|++|||+|++|++++|++ ++|+ |+||.|| ||++|++
T Consensus 76 ~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~~i~~tNP~d~~t~~~~~~s-g~~~~kviG~~~-ld~~r~~ 152 (263)
T cd00650 76 ITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKY-SPDAWIIVVSNPVDIITYLVWRYS-GLPKEKVIGLGT-LDPIRFR 152 (263)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHHh-CCCchhEEEeec-chHHHHH
Confidence 9999999999999999999999999999999999 699999999999999999999998 6765 8899999 9999999
Q ss_pred HHHHHHhCCCcccccceEEEeccCCCcccccccce
Q 019713 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAR 291 (337)
Q Consensus 257 ~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~ 291 (337)
+++|+++|+++++|+ .+|||+||++|+|+||+++
T Consensus 153 ~~la~~l~v~~~~v~-~~v~G~hg~~~~~~~s~~~ 186 (263)
T cd00650 153 RILAEKLGVDPDDVK-VYILGEHGGSQVPDWSTVR 186 (263)
T ss_pred HHHHHHhCCCccceE-EEEEEcCCCceEeccccch
Confidence 999999999999999 5999999999999999986
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=240.82 Aligned_cols=141 Identities=30% Similarity=0.450 Sum_probs=126.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+||||+|+||+++++.|+.+++.+| |+|+ |.++++++|+++||+|+.++...++.++.+++++++|||+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~e-----i~L~--D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDiv 73 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADE-----IVLI--DINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIV 73 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSE-----EEEE--ESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCc-----eEEe--ccCcccceeeehhhhhhhhhcccccccccccccccccccEE
Confidence 6999999779999999999999999865 4454 45667999999999999877667788888999999999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEE
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG 245 (337)
|+++|.||+||++|.+++..|++++++++++|+++ +|+++++++|||+|++|++++++++..|+|+||
T Consensus 74 vitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~-~p~~~vivvtNPvd~~t~~~~~~s~~~~~kviG 141 (141)
T PF00056_consen 74 VITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKY-APDAIVIVVTNPVDVMTYVAQKYSGFPPNKVIG 141 (141)
T ss_dssp EETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHH-STTSEEEE-SSSHHHHHHHHHHHHTSSGGGEEE
T ss_pred EEeccccccccccHHHHHHHhHhHHHHHHHHHHHh-CCccEEEEeCCcHHHHHHHHHHhhCcCcccCcC
Confidence 99999999999999999999999999999999999 699999999999999999999999544448887
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=249.21 Aligned_cols=217 Identities=26% Similarity=0.309 Sum_probs=175.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec---Cccccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---NPYELF 170 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t---~~~eal 170 (337)
....||+|.||+|-||+.+...|....+.++ |.|+|+. ...|++.||.|+... ..+.-.+ +.+.++
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~-----LaLYDi~----~~~GVaaDlSHI~T~--s~V~g~~g~~~L~~al 94 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLKLNPLVSE-----LALYDIA----NTPGVAADLSHINTN--SSVVGFTGADGLENAL 94 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHhcCcccce-----eeeeecc----cCCcccccccccCCC--CceeccCChhHHHHHh
Confidence 4567999999999999999999999998865 6667763 567999999998743 3344333 357899
Q ss_pred CCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHH---HHHCCCCCCCeEEec
Q 019713 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHAL 247 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~---~k~s~~~p~kvIG~g 247 (337)
++||+||+-||.||||||+|.||+..|+.|+++++..+.++ ||++++.++|||+|....++ .|..+-++++.+...
T Consensus 95 ~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~-cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGV 173 (345)
T KOG1494|consen 95 KGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKC-CPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGV 173 (345)
T ss_pred cCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhh-CccceeEeecCcccccchHHHHHHHHcCCCCccceece
Confidence 99999999999999999999999999999999999999997 89999999999999866554 556667777666566
Q ss_pred CchhHHHHHHHHHHHhCCCc-ccccceEEEeccC-CCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcc---
Q 019713 248 TRLDENRAKCQLALKAGVFY-DKVSNMTIWGNHS-TTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVD--- 322 (337)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~~-~~V~~v~V~GnHG-~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~--- 322 (337)
|.||..|++.++++.++++| ++++ +.|+|.|. .|.+|++|+++ |...+-.+ ..+.++.++|..|-+.
T Consensus 174 TtLDvVRA~tFv~~~~~~~p~~~v~-VPVIGGHaG~TIlPLlSQ~~----p~~~~~~~---~~~~Lt~RiQ~gGtEVV~A 245 (345)
T KOG1494|consen 174 TTLDVVRANTFVAEVLNLDPAEDVD-VPVIGGHAGITIIPLLSQCK----PPFRFTDD---EIEALTHRIQNGGTEVVKA 245 (345)
T ss_pred ehhhhhhHHHHHHHHhCCCchhcCC-cceecCcCCceEeeecccCC----CcccCCHH---HHHHHHHHHHhCCceEEEe
Confidence 88999999999999999999 4577 79999995 69999999986 33332211 2456788888877554
Q ss_pred -----cceeheee
Q 019713 323 -----NFTLILFV 330 (337)
Q Consensus 323 -----~~~l~~~~ 330 (337)
+.+|+|=|
T Consensus 246 KaGaGSATLSMAy 258 (345)
T KOG1494|consen 246 KAGAGSATLSMAY 258 (345)
T ss_pred ccCCCchhhhHHH
Confidence 45666644
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=244.91 Aligned_cols=221 Identities=17% Similarity=0.114 Sum_probs=160.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCC--CCceEEEeccccch-hhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGP--DQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e--~~~v~L~L~d~d~~-~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
+||+|||| |+ +..+.|+.+-+-.. -..-+|.|+|+|.. .+.....+..+.+.. ....+++.++|..+|++||
T Consensus 1 ~KI~iIGg-GS---~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-g~~~~v~~ttD~~~Al~gA 75 (425)
T cd05197 1 VKIAIIGG-GS---SFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEV-GADIKFEKTMDLEDAIIDA 75 (425)
T ss_pred CEEEEECC-ch---HhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCHHHHhCCC
Confidence 69999997 54 44444433222111 11135667777643 222333444444333 2234788889999999999
Q ss_pred cEEEEe---ccc---------CCCCCC---c-----hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHH
Q 019713 174 EWALLI---GAK---------PRGPGM---E-----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL 233 (337)
Q Consensus 174 DvVIit---ag~---------prk~g~---~-----R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~ 233 (337)
|+||.+ ||. |.|.|. + ......+|+++++++++.|+++ +|+||+|++|||+|++|++++
T Consensus 76 DfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~-~P~a~lin~TNP~di~t~a~~ 154 (425)
T cd05197 76 DFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKL-SPDAWYLNFTNPAGEVTEAVR 154 (425)
T ss_pred CEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHh-CCCcEEEecCChHHHHHHHHH
Confidence 999986 332 334432 2 1234679999999999999999 799999999999999999999
Q ss_pred HHCCCCCCCeEEecCchhHHHHHHHHHHHhCCCcccccceEEEe-ccCCCcccccccceEcCeehhhhhhh----ccc--
Q 019713 234 KNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD----HKW-- 306 (337)
Q Consensus 234 k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~G-nHG~t~vp~~S~a~V~G~pl~e~i~~----~~~-- 306 (337)
+.+| ..|+||+|+. +.|+++.+|+.+|+++++|+. +++| ||| +|||+++++|+|+.+.+.+ +.+
T Consensus 155 ~~~p--~~rviG~c~~--~~r~~~~ia~~lgv~~~~v~~-~v~GlnHg----~~~s~~~~~G~~l~p~l~~~~~~~~~~~ 225 (425)
T cd05197 155 RYVP--PEKAVGLCNV--PIGVMEIVAKLLGESEEKVDW-QYAGLNHG----IWLNRVRYNGGDVTPKLDEWVEEKSKDW 225 (425)
T ss_pred HhCC--CCcEEEECCC--HHHHHHHHHHHhCCCHHHeEE-EEEeccCe----EeeEeEEECCeecHHHHHHHHhccCccc
Confidence 9752 2389999999 999999999999999999995 8999 996 9999999999999976542 111
Q ss_pred -chH-------HH-HHHHHhccCcccceeheeeee
Q 019713 307 -LEE-------GF-TETIQKVRLVDNFTLILFVMN 332 (337)
Q Consensus 307 -~~~-------e~-~~~v~~~g~~~~~~l~~~~~~ 332 (337)
... .+ .+..+..|.-|+.|+.|||+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~ 260 (425)
T cd05197 226 KTENPFVDQLSPAAIDFYRFYGVLPNPYLRYYLSW 260 (425)
T ss_pred cccccccccccchHHHHHHhCCCcccCCccccCcc
Confidence 001 12 356777899999999999884
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=239.60 Aligned_cols=216 Identities=14% Similarity=0.114 Sum_probs=163.1
Q ss_pred CCEEEEEcCCCchHHHHHH--HHH-HcCCCCCCCceEEEeccccchhhHHH-hHHHhHhhhccCC--cccEEEecCcccc
Q 019713 96 MVNIAVSGAAGMIANHLLF--KLA-AGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPL--LREVKIGINPYEL 169 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~--~L~-~~~l~~e~~~v~L~L~d~d~~~~~l~-g~a~DL~d~~~~~--~~~v~i~t~~~ea 169 (337)
|+||+|||| |.+|++.++ .++ ..++.+ ..+.|+|+ ++++++ +.++ +++..... ..+++.++|.+++
T Consensus 1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~----~evvLvDi--d~er~~~~~~l-~~~~~~~~~~~~~i~~ttD~~ea 72 (431)
T PRK15076 1 MPKITFIGA-GSTVFTKNLLGDILSVPALRD----AEIALMDI--DPERLEESEIV-ARKLAESLGASAKITATTDRREA 72 (431)
T ss_pred CcEEEEECC-CHHHhHHHHHHHHhhCccCCC----CEEEEECC--CHHHHHHHHHH-HHHHHHhcCCCeEEEEECCHHHH
Confidence 479999995 999999877 665 344433 24555655 445555 4545 55544222 2356666666899
Q ss_pred cCCCcEEEEecccC-CCCC--------------Cchhhh--------HHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 170 FEDAEWALLIGAKP-RGPG--------------MERAGL--------LDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 170 l~dADvVIitag~p-rk~g--------------~~R~dl--------l~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
++|||+||++++.+ ++++ ++|.++ +.+|++++++++++|+++ +|+||+|++|||+|
T Consensus 73 l~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~-~p~a~iin~tNP~d 151 (431)
T PRK15076 73 LQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEV-CPDALLLNYVNPMA 151 (431)
T ss_pred hCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHH-CCCeEEEEcCChHH
Confidence 99999999998876 5555 567788 899999999999999999 79999999999999
Q ss_pred hHHHHHHHHCCCCCCCeEEec-CchhHHHHHHHHHHHhCCCcccccceEEEe-ccCCCcccccccceEcCeehhhhhhhc
Q 019713 227 TNALICLKNAPSIPAKNFHAL-TRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKDH 304 (337)
Q Consensus 227 ~~t~i~~k~s~~~p~kvIG~g-T~LDs~R~~~~lA~~lgv~~~~V~~v~V~G-nHG~t~vp~~S~a~V~G~pl~e~i~~~ 304 (337)
++|+.++++ + +.|+||+| +.+|+. ..+|+.+|+++++|+. ++.| || +.|+.+++++|+++.+.+.+.
T Consensus 152 ivt~~~~~~-~--~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~-~~~GlNH----~~W~~~~~~~G~D~~p~l~~~ 220 (431)
T PRK15076 152 MNTWAMNRY-P--GIKTVGLCHSVQGTA---EQLARDLGVPPEELRY-RCAGINH----MAWYLELERKGEDLYPELRAA 220 (431)
T ss_pred HHHHHHhcC-C--CCCEEEECCCHHHHH---HHHHHHhCCCHHHeEE-EEEeecc----hhhheeeeECCcchHHHHHHH
Confidence 999998743 2 23899999 999986 8899999999999995 8999 99 999999999999998766431
Q ss_pred c-----cchHHH-HHHHHhccCccc-------ceeheeee
Q 019713 305 K-----WLEEGF-TETIQKVRLVDN-------FTLILFVM 331 (337)
Q Consensus 305 ~-----~~~~e~-~~~v~~~g~~~~-------~~l~~~~~ 331 (337)
. ...+.+ .+-.+.-|.-++ .|+.|||+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~ 260 (431)
T PRK15076 221 AAEGQTRCQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIK 260 (431)
T ss_pred HhccCchhcccccHHHHHHhCCCcccchhhhhhhhcccCc
Confidence 0 001112 244555666666 67777764
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-27 Score=235.16 Aligned_cols=218 Identities=15% Similarity=0.095 Sum_probs=162.1
Q ss_pred CEEEEEcCCCchHHH--HHHHHHHc-CCCCCCCceEEEeccccchhhHHHh---HHHhHhhhccCCcccEEEecCccccc
Q 019713 97 VNIAVSGAAGMIANH--LLFKLAAG-EVLGPDQPIALKLLGSERSLQALEG---VAMELEDSLFPLLREVKIGINPYELF 170 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~--la~~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g---~a~DL~d~~~~~~~~v~i~t~~~eal 170 (337)
+||+|||| |.+ ++ +...|+.. .-++ .-+|.|+|+|. +++++. .+..+.+.. ....+++.++|..+++
T Consensus 1 ~KI~iIGa-GS~-~tp~li~~l~~~~~~l~---~~ei~L~Did~-~~rl~~v~~~~~~~~~~~-~~~~~v~~t~d~~~al 73 (419)
T cd05296 1 MKLTIIGG-GSS-YTPELIEGLIRRYEELP---VTELVLVDIDE-EEKLEIVGALAKRMVKKA-GLPIKVHLTTDRREAL 73 (419)
T ss_pred CEEEEECC-chH-hHHHHHHHHHhccccCC---CCEEEEecCCh-HHHHHHHHHHHHHHHHhh-CCCeEEEEeCCHHHHh
Confidence 69999997 653 22 23333332 2221 13566778874 455543 223333222 2234677788999999
Q ss_pred CCCcEEEEecccCCCCCCchhh--------------------hHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHH
Q 019713 171 EDAEWALLIGAKPRGPGMERAG--------------------LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~d--------------------ll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~ 230 (337)
+|||+||++.+.++.++++|.+ ...+|++++++++++|+++ ||+||+|++|||+|++|+
T Consensus 74 ~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~-~Pda~lin~TNP~~ivt~ 152 (419)
T cd05296 74 EGADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEEL-APDAWLINFTNPAGIVTE 152 (419)
T ss_pred CCCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHH-CCCeEEEEecCHHHHHHH
Confidence 9999999988766655554443 2679999999999999999 799999999999999999
Q ss_pred HHHHHCCCCCCCeEEecCchhHHHHHHHHHHHhCCCcccccceEEEe-ccCCCcccccccceEcCeehhhhhhhc----c
Q 019713 231 ICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKDH----K 305 (337)
Q Consensus 231 i~~k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~G-nHG~t~vp~~S~a~V~G~pl~e~i~~~----~ 305 (337)
++++.+ +.|+||+|+. +.|+++.+|+.+|+++++|+. +|+| || +.|+.+++.+|+++.+.+.+. .
T Consensus 153 a~~k~~---~~rviGlc~~--~~r~~~~ia~~lg~~~~~v~~-~v~GlNH----~~w~~~~~~~G~D~~p~l~~~~~~~~ 222 (419)
T cd05296 153 AVLRHT---GDRVIGLCNV--PIGLQRRIAELLGVDPEDVFI-DYAGLNH----LGWLRRVLLDGEDVLPELLEDLAALL 222 (419)
T ss_pred HHHHhc---cCCEEeeCCc--HHHHHHHHHHHhCCCHHHceE-EEEeccc----ceeeeeeeECCcccHHHHHHHhhhcc
Confidence 999875 4589999877 699999999999999999995 9999 99 999999999999998744321 0
Q ss_pred cc--hHHH-HHHHHhccCcccceeheeeee
Q 019713 306 WL--EEGF-TETIQKVRLVDNFTLILFVMN 332 (337)
Q Consensus 306 ~~--~~e~-~~~v~~~g~~~~~~l~~~~~~ 332 (337)
.. ...| .+..+..|.-|+.||+||||.
T Consensus 223 ~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~ 252 (419)
T cd05296 223 SFEEGLLFGPELLRALGALPNEYLRYYYQT 252 (419)
T ss_pred ccccccchHHHHHHhcCCcccchHHHHCCc
Confidence 00 0112 366777899999999999973
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=216.79 Aligned_cols=218 Identities=15% Similarity=0.137 Sum_probs=168.7
Q ss_pred CEEEEEcCCCchHHHHHH--HHHHc-CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccC--CcccEEEecCcccccC
Q 019713 97 VNIAVSGAAGMIANHLLF--KLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--LLREVKIGINPYELFE 171 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~--~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~--~~~~v~i~t~~~eal~ 171 (337)
+||+|||| |.+|++++. .++.. .+.+ ..+.|+| +++++++....++.+.... ...+++.++|.+++++
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g----~eV~L~D--id~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~ 73 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSG----STIALMD--IDEERLETVEILAKKIVEELGAPLKIEATTDRREALD 73 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCC----CEEEEEC--CCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhc
Confidence 58999995 999999877 45543 4433 1344454 4567777777777665422 2246677777789999
Q ss_pred CCcEEEEecccCCCCCCch----------------------hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHH
Q 019713 172 DAEWALLIGAKPRGPGMER----------------------AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (337)
Q Consensus 172 dADvVIitag~prk~g~~R----------------------~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t 229 (337)
|||+||++.+.++.++.++ .....+|++++.++++.+.++ +|++|++++|||++++|
T Consensus 74 ~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~-~p~a~~i~~tNPv~i~t 152 (423)
T cd05297 74 GADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEEL-CPDAWLLNYANPMAELT 152 (423)
T ss_pred CCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHH-CCCCEEEEcCChHHHHH
Confidence 9999999987655554444 345778999999999999999 68999999999999999
Q ss_pred HHHHHHCCCCCCCeEEecCchhHHHHHHHHHHHhCCCcccccceEEEe-ccCCCcccccccceEcCeehhhhhhh---c-
Q 019713 230 LICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD---H- 304 (337)
Q Consensus 230 ~i~~k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~G-nHG~t~vp~~S~a~V~G~pl~e~i~~---~- 304 (337)
+++++.++ .|+||+|+. +.|++..+|+.+|+++++|+. +++| || +.||..++.+|+++.+.+.+ +
T Consensus 153 ~~~~k~~~---~rviG~c~~--~~~~~~~~a~~l~~~~~~v~~-~~~GlNH----~~w~~~~~~~G~d~~p~l~~~~~~~ 222 (423)
T cd05297 153 WALNRYTP---IKTVGLCHG--VQGTAEQLAKLLGEPPEEVDY-QVAGINH----MAWLLKFEYNGEDLYPLLDEWIEEG 222 (423)
T ss_pred HHHHHhCC---CCEEEECCc--HHHHHHHHHHHhCCCHHHeEE-EEEeecc----HhhhhhheECCcchHHHHHHHHhcc
Confidence 99999874 489999987 899999999999999999995 8999 99 99999999999999876543 1
Q ss_pred --ccchHH-H-HHHHHhccCccc-------ceeheeeee
Q 019713 305 --KWLEEG-F-TETIQKVRLVDN-------FTLILFVMN 332 (337)
Q Consensus 305 --~~~~~e-~-~~~v~~~g~~~~-------~~l~~~~~~ 332 (337)
.|.... + .+-.+.-|..|+ .|++|||++
T Consensus 223 ~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~ 261 (423)
T cd05297 223 SEEWDQLSPVRFDMYRRYGLFPTESSEHLSEYVPHYRKE 261 (423)
T ss_pred CccchhcccchHHHHHHcCCcccCcchhhhhhccccccc
Confidence 121111 2 355666788887 788888764
|
linked to 3D####ucture |
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-23 Score=207.10 Aligned_cols=191 Identities=15% Similarity=0.088 Sum_probs=138.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCC--CCceEEEeccccch-hhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGP--DQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e--~~~v~L~L~d~d~~-~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
|||+|||| |. +.++.|+.+-+... -..-.|.|+|+|.. .+.....+..+.+.. ....+++.++|..+|++||
T Consensus 1 ~KI~iIGa-GS---~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~~v~~Ttdr~eAl~gA 75 (437)
T cd05298 1 FKIVIAGG-GS---TYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEIKFVYTTDPEEAFTDA 75 (437)
T ss_pred CeEEEECC-cH---HHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCeEEEEECCHHHHhCCC
Confidence 69999997 54 34444432221110 11135666777642 222333444444333 2334788889999999999
Q ss_pred cEEEEe---ccc---------CCCCCC---ch-----hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHH
Q 019713 174 EWALLI---GAK---------PRGPGM---ER-----AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL 233 (337)
Q Consensus 174 DvVIit---ag~---------prk~g~---~R-----~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~ 233 (337)
|+||.+ ||. |.|.|. +. .-...||+++++++++.|+++ ||+||+|++|||+|++|++++
T Consensus 76 DfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~-~pda~lin~tNP~~~vt~~~~ 154 (437)
T cd05298 76 DFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKY-SPDAWILNYSNPAAIVAEALR 154 (437)
T ss_pred CEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHH
Confidence 999986 332 334443 22 234779999999999999999 799999999999999999999
Q ss_pred HHCCCCCCCeEEecCchhHHHHHHHHHHHhCCCcccccceEEEe-ccCCCcccccccceEc-Ceehhhhhh
Q 019713 234 KNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARIN-GLPVKEIIK 302 (337)
Q Consensus 234 k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~G-nHG~t~vp~~S~a~V~-G~pl~e~i~ 302 (337)
+..+. .|+||.|.. ..-++..+|+.+|+++++|+. .+.| || +.|+.+++.+ |+++.+.+.
T Consensus 155 ~~~~~--~kviGlC~~--~~~~~~~la~~lg~~~~~v~~-~~~GlNH----~~w~~~~~~~~G~D~~p~l~ 216 (437)
T cd05298 155 RLFPN--ARILNICDM--PIAIMDSMAAILGLDRKDLEP-DYFGLNH----FGWFTKIYDKQGEDLLPKLR 216 (437)
T ss_pred HHCCC--CCEEEECCc--HHHHHHHHHHHhCCCHHHceE-EEEeecc----hhhhhheEECCCCchHHHHH
Confidence 87422 389999765 456788999999999999994 7899 99 9999999999 999987654
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-20 Score=184.37 Aligned_cols=222 Identities=16% Similarity=0.095 Sum_probs=151.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCC--CCCceEEEeccccchhhHHH-hHHHhHhhhccCCcccEEEecCcccccC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLG--PDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGINPYELFE 171 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~--e~~~v~L~L~d~d~~~~~l~-g~a~DL~d~~~~~~~~v~i~t~~~eal~ 171 (337)
+..||+|||| | |+..+.++.+.+.. +-....|.|+|+|....+.- ..+--+-+.. ....++..++|..+||+
T Consensus 2 ~~~KI~iIGg-G---St~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~-g~~~kv~~ttd~~eAl~ 76 (442)
T COG1486 2 KKFKIVIIGG-G---STYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEA-GAPVKVEATTDRREALE 76 (442)
T ss_pred CcceEEEECC-C---ccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhh-CCCeEEEEecCHHHHhc
Confidence 4579999997 5 55555554444431 11123677777764322211 1111122222 22356788899999999
Q ss_pred CCcEEEEec---c---------cCCCCCCchh--------hhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHH
Q 019713 172 DAEWALLIG---A---------KPRGPGMERA--------GLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231 (337)
Q Consensus 172 dADvVIita---g---------~prk~g~~R~--------dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i 231 (337)
|||+|+.+. | .|.|.|.-+. --..|+++++-+|++.|+++ ||+||++++|||+.++|+.
T Consensus 77 gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~-~P~Aw~lNytNP~~~vTeA 155 (442)
T COG1486 77 GADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKV-CPNAWMLNYTNPAAIVTEA 155 (442)
T ss_pred CCCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHh-CCCceEEeccChHHHHHHH
Confidence 999999863 3 2445553222 12468999999999999999 7999999999999999999
Q ss_pred HHHHCCCCCCCeEEecCchhHHHHHHHHHHHhCCCc-ccccceEEEe-ccCCCcccccccceEcCeehhhhhhh----c-
Q 019713 232 CLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFY-DKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD----H- 304 (337)
Q Consensus 232 ~~k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~-~~V~~v~V~G-nHG~t~vp~~S~a~V~G~pl~e~i~~----~- 304 (337)
+.++.|.+ |+||.|.. ..-....||+.||+.+ ++++. -+.| || +.||..++.+|+++.+-+.+ .
T Consensus 156 v~r~~~~~--K~VGlCh~--~~g~~~~lAe~L~~~~~~~l~~-~~aGlNH----~~w~~~~~~~G~d~~p~l~~~~~~~~ 226 (442)
T COG1486 156 VRRLYPKI--KIVGLCHG--PIGIAMELAEVLGLEPREDLRY-RVAGLNH----MVWILRVRDDGEDLYPELLEALEEGG 226 (442)
T ss_pred HHHhCCCC--cEEeeCCc--hHHHHHHHHHHhCCCchhceeE-EEeechh----hhhhhHhhhcCccchHHHHHHHhccc
Confidence 99977422 89999665 4667999999999975 99994 7899 99 99999999999888764432 1
Q ss_pred -ccc-------hHHHHHHHHh--ccCcccceeheeee
Q 019713 305 -KWL-------EEGFTETIQK--VRLVDNFTLILFVM 331 (337)
Q Consensus 305 -~~~-------~~e~~~~v~~--~g~~~~~~l~~~~~ 331 (337)
.|. ...+.+...+ -+..|+.|+.||||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 263 (442)
T COG1486 227 SPSEPENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYY 263 (442)
T ss_pred cCCccccccccCcchHHHHHHhCcCcccCcchhhhee
Confidence 111 0112233333 34566778777776
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=142.45 Aligned_cols=156 Identities=19% Similarity=0.145 Sum_probs=108.1
Q ss_pred EEEEEcCCCchHHHHH--HHHHHcCCCCCCCceEEEeccccchhhHHH---hHHHhHhhhccCCcccEEEecCcccccCC
Q 019713 98 NIAVSGAAGMIANHLL--FKLAAGEVLGPDQPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 98 KI~IIGAaG~VG~~la--~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~---g~a~DL~d~~~~~~~~v~i~t~~~eal~d 172 (337)
||+|||| |++-.... ..+...+-++ .-++.|+|+|. ++|+ ..+..+.+.. ....+++.++|..+|++|
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~---~~ei~L~Did~--~RL~~~~~~~~~~~~~~-~~~~~v~~ttd~~eAl~g 73 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEELS---GSEIVLMDIDE--ERLEIVERLARRMVEEA-GADLKVEATTDRREALEG 73 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTST---EEEEEEE-SCH--HHHHHHHHHHHHHHHHC-TTSSEEEEESSHHHHHTT
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccCC---CcEEEEEcCCH--HHHHHHHHHHHHHHHhc-CCCeEEEEeCCHHHHhCC
Confidence 8999996 76555422 2333333332 24677777754 4444 3444444333 334478888999999999
Q ss_pred CcEEEEec---c---------cCCCCCCch----------hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHH
Q 019713 173 AEWALLIG---A---------KPRGPGMER----------AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (337)
Q Consensus 173 ADvVIita---g---------~prk~g~~R----------~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~ 230 (337)
||+||.+. | .|.+.|... .....|+++++.+++++|+++ |||||+|++|||+..+|.
T Consensus 74 ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~-~PdAw~iNytNP~~~vt~ 152 (183)
T PF02056_consen 74 ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEEL-CPDAWLINYTNPMGIVTE 152 (183)
T ss_dssp ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHH-TTTSEEEE-SSSHHHHHH
T ss_pred CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEeccChHHHHHH
Confidence 99999874 2 366666422 234679999999999999999 799999999999999999
Q ss_pred HHHHHCCCCCCCeEEecCchhHHHHHHHHHHHhCC
Q 019713 231 ICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGV 265 (337)
Q Consensus 231 i~~k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv 265 (337)
.+.+.++++ |++|.|.. ..-+...+|+.||+
T Consensus 153 a~~r~~~~~--k~vGlCh~--~~~~~~~la~~L~~ 183 (183)
T PF02056_consen 153 ALSRYTPKI--KVVGLCHG--PQGTRRQLAKLLGM 183 (183)
T ss_dssp HHHHHSTTS--EEEEE-SH--HHHHHHHHHHHHT-
T ss_pred HHHHhCCCC--CEEEECCC--HHHHHHHHHHHhCc
Confidence 999987545 79999755 46678888988874
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-16 Score=139.41 Aligned_cols=75 Identities=32% Similarity=0.386 Sum_probs=67.0
Q ss_pred CchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhh----cccchHHHHHHHHhccCccc
Q 019713 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD----HKWLEEGFTETIQKVRLVDN 323 (337)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~----~~~~~~e~~~~v~~~g~~~~ 323 (337)
|.||++|++++||+++|++|.+|+ ++||||||++|||+||+++|+|.|+.++.+. ..|..+++.+.++++|++.-
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~-~~ViGeHg~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVN-AYVIGEHGDSQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEE-EEEEBSSSTTEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceE-EEEEecCCcceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 789999999999999999999999 5999999999999999999999999887643 34567899999999988763
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T .... |
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7e-09 Score=99.97 Aligned_cols=144 Identities=18% Similarity=0.126 Sum_probs=98.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHH---hHHHhH-hhhc----------cCCcccEE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE---GVAMEL-EDSL----------FPLLREVK 161 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~---g~a~DL-~d~~----------~~~~~~v~ 161 (337)
.+||+|||| |.||+.+|..++.+|+ +|.|. |+ +++.++ ...... +... ...+..++
T Consensus 3 i~kv~ViGa-G~MG~gIA~~~A~~G~-----~V~l~--D~--~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~ 72 (307)
T COG1250 3 IKKVAVIGA-GVMGAGIAAVFALAGY-----DVVLK--DI--SPEALERALAYIEKNLEKLVEKGKLTEEEADAALARIT 72 (307)
T ss_pred ccEEEEEcc-cchhHHHHHHHhhcCC-----ceEEE--eC--CHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhcc
Confidence 469999995 9999999999999665 36653 33 322211 111111 1000 01122344
Q ss_pred EecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHH--------
Q 019713 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALIC-------- 232 (337)
Q Consensus 162 i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~-------- 232 (337)
.+ .++.+++|||+||.++ .+|.++.+++.+++.++++|++ |++||.... ++.++
T Consensus 73 ~~-~~~~~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~a--IlASNTSsl~it~ia~~~~rper 135 (307)
T COG1250 73 PT-TDLAALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDA--ILASNTSSLSITELAEALKRPER 135 (307)
T ss_pred cc-CchhHhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCc--EEeeccCCCCHHHHHHHhCCchh
Confidence 33 4567999999999985 6788999999999999988998 489998765 44444
Q ss_pred ---HHHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCc
Q 019713 233 ---LKNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFY 267 (337)
Q Consensus 233 ---~k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~ 267 (337)
.|++ ++|+ ++| |..|.-++......+++++|..|
T Consensus 136 ~iG~HFf-NP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~ 178 (307)
T COG1250 136 FIGLHFF-NPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTP 178 (307)
T ss_pred EEEEecc-CCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCC
Confidence 3344 3443 555 66788889888999999999765
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.6e-09 Score=92.89 Aligned_cols=145 Identities=17% Similarity=0.081 Sum_probs=86.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHh---HHHh-Hhhh---c-------cCCcccEEEe
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG---VAME-LEDS---L-------FPLLREVKIG 163 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g---~a~D-L~d~---~-------~~~~~~v~i~ 163 (337)
||+|||| |.+|..+|..++..|+ .|.|+ |. +++.++. ...+ +... . .....+++.+
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~-----~V~l~--d~--~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 70 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGY-----EVTLY--DR--SPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT 70 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS-----EEEEE---S--SHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCC-----cEEEE--EC--ChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc
Confidence 7999995 9999999999999886 36653 43 3232221 1111 1100 0 0123467776
Q ss_pred cCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHH----------
Q 019713 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALIC---------- 232 (337)
Q Consensus 164 t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~---------- 232 (337)
+ +++++.|||+||.+. .++.++.+++.+.|++++.|+++ ++||.... ++.++
T Consensus 71 ~-dl~~~~~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~i--lasnTSsl~i~~la~~~~~p~R~i 133 (180)
T PF02737_consen 71 T-DLEEAVDADLVIEAI--------------PEDLELKQELFAELDEICPPDTI--LASNTSSLSISELAAALSRPERFI 133 (180)
T ss_dssp S-SGGGGCTESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSE--EEE--SSS-HHHHHTTSSTGGGEE
T ss_pred c-CHHHHhhhheehhhc--------------cccHHHHHHHHHHHHHHhCCCce--EEecCCCCCHHHHHhccCcCceEE
Confidence 5 456666999999985 45689999999999999888985 78887654 44443
Q ss_pred -HHHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCcccc
Q 019713 233 -LKNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYDKV 270 (337)
Q Consensus 233 -~k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~~V 270 (337)
.++. ++|. +++ |..|.-++......+.+.+|..|--+
T Consensus 134 g~Hf~-~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v 177 (180)
T PF02737_consen 134 GMHFF-NPPHLMPLVEVVPGPKTSPETVDRVRALLRSLGKTPVVV 177 (180)
T ss_dssp EEEE--SSTTT--EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred EEecc-cccccCceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 2222 2222 444 45566666666667777777766444
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.3e-08 Score=93.76 Aligned_cols=148 Identities=10% Similarity=-0.001 Sum_probs=94.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHH----hHhhh--c----cCCcccEEEecC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM----ELEDS--L----FPLLREVKIGIN 165 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~----DL~d~--~----~~~~~~v~i~t~ 165 (337)
..||+|||| |.||+.+|..++..|+ .|.+ +|. +++.++.... .+... . .....+++..++
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~-----~V~l--~D~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 76 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGL-----DVVA--WDP--APGAEAALRANVANAWPALERQGLAPGASPARLRFVAT 76 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC-----eEEE--EeC--CHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCC
Confidence 468999995 9999999999999886 3555 443 3232221100 01110 0 011135566555
Q ss_pred cccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhH-HHHH-----------H
Q 019713 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN-ALIC-----------L 233 (337)
Q Consensus 166 ~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~-t~i~-----------~ 233 (337)
..+++++||+|+.++ .+|.++.+++...|.+++.|++ |+.||.+... +.+. .
T Consensus 77 l~~av~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~s~la~~~~~p~R~~g~ 140 (321)
T PRK07066 77 IEACVADADFIQESA--------------PEREALKLELHERISRAAKPDA--IIASSTSGLLPTDFYARATHPERCVVG 140 (321)
T ss_pred HHHHhcCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe--EEEECCCccCHHHHHHhcCCcccEEEE
Confidence 557899999999985 4567888999999999988887 6899987653 3332 1
Q ss_pred HHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCcccc
Q 019713 234 KNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYDKV 270 (337)
Q Consensus 234 k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~~V 270 (337)
+++ +.|. +++ |..|.-++......+.+.+|..|--+
T Consensus 141 Hff-nP~~~~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v 182 (321)
T PRK07066 141 HPF-NPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPLHV 182 (321)
T ss_pred ecC-CccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEec
Confidence 222 2332 444 45677777666666777899777444
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.7e-08 Score=91.29 Aligned_cols=147 Identities=12% Similarity=0.052 Sum_probs=88.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhh----hc--c--------CCccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED----SL--F--------PLLRE 159 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d----~~--~--------~~~~~ 159 (337)
.++.||+|||| |.||..+|..++..|. +|.++ |. +++.++.....+.. .. . ....+
T Consensus 3 ~~~~~V~ViGa-G~mG~~iA~~~a~~G~-----~V~l~--d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~ 72 (286)
T PRK07819 3 DAIQRVGVVGA-GQMGAGIAEVCARAGV-----DVLVF--ET--TEELATAGRNRIEKSLERAVSRGKLTERERDAALAR 72 (286)
T ss_pred CCccEEEEEcc-cHHHHHHHHHHHhCCC-----EEEEE--EC--CHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhC
Confidence 34569999995 9999999999999886 36553 33 33333221111110 00 0 01235
Q ss_pred EEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhc-CCCeEEEEeCCCchh-HHHHH-----
Q 019713 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA-SRNVKVIVVGNPCNT-NALIC----- 232 (337)
Q Consensus 160 v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a-~p~aivIvvtNPvd~-~t~i~----- 232 (337)
++.++ +++++++||+||.+. .++.++.+++...+++++ .|+++ ++||.... ++.+.
T Consensus 73 l~~~~-~~~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~i--l~snTS~~~~~~la~~~~~ 135 (286)
T PRK07819 73 LRFTT-DLGDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAV--LASNTSSIPIMKLAAATKR 135 (286)
T ss_pred eEeeC-CHHHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcE--EEECCCCCCHHHHHhhcCC
Confidence 55654 558899999999985 566888899999999986 67864 67776543 22222
Q ss_pred ------HHHCCCCCC-----CeE-EecCchhHHHHHHHHHH-HhCCCcc
Q 019713 233 ------LKNAPSIPA-----KNF-HALTRLDENRAKCQLAL-KAGVFYD 268 (337)
Q Consensus 233 ------~k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~-~lgv~~~ 268 (337)
.++. +.++ +++ |..|.-++...-..+.+ .+|..|-
T Consensus 136 ~~r~~g~hf~-~P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv 183 (286)
T PRK07819 136 PGRVLGLHFF-NPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVV 183 (286)
T ss_pred CccEEEEecC-CCcccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCCce
Confidence 1222 1111 333 56676666444444444 5887663
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-07 Score=99.64 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=97.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHh---HHHhHhh-hc----------cCCcccEE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG---VAMELED-SL----------FPLLREVK 161 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g---~a~DL~d-~~----------~~~~~~v~ 161 (337)
..||+|||| |.||..+|..++..|+ +|.|+ |. +.+.++. .+.++.+ .. .....+++
T Consensus 313 i~~v~ViGa-G~mG~gIA~~~a~~G~-----~V~l~--d~--~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 382 (714)
T TIGR02437 313 VKQAAVLGA-GIMGGGIAYQSASKGT-----PIVMK--DI--NQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGIT 382 (714)
T ss_pred cceEEEECC-chHHHHHHHHHHhCCC-----eEEEE--eC--CHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE
Confidence 458999995 9999999999999886 36654 33 3332221 1111100 00 01123566
Q ss_pred EecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHH--------
Q 019713 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALIC-------- 232 (337)
Q Consensus 162 i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~-------- 232 (337)
.++ ++++++|||+||.+. .++.++.+++..+|+++++|++ |++||.... ++.++
T Consensus 383 ~~~-~~~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasnTS~l~i~~ia~~~~~p~r 445 (714)
T TIGR02437 383 PTL-SYAGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDA--ILASNTSTISISLLAKALKRPEN 445 (714)
T ss_pred EeC-CHHHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCccc
Confidence 654 568899999999985 5678999999999999988887 479998764 44443
Q ss_pred ---HHHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCccccc
Q 019713 233 ---LKNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYDKVS 271 (337)
Q Consensus 233 ---~k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~~V~ 271 (337)
++++ +++. ++| |..|.-++......+++++|..|--|+
T Consensus 446 ~ig~Hff-~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~ 492 (714)
T TIGR02437 446 FCGMHFF-NPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTPIVVN 492 (714)
T ss_pred EEEEecC-CCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeC
Confidence 2232 2222 444 566877877666777788887775443
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.1e-07 Score=99.39 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=97.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHh---HHHh-Hhhhc----------cCCcccEE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG---VAME-LEDSL----------FPLLREVK 161 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g---~a~D-L~d~~----------~~~~~~v~ 161 (337)
..||+|||| |.||..+|..++..|+ .|.|+ |. +++.++. .+.+ +.... .....+++
T Consensus 313 i~~v~ViGa-G~mG~gIA~~~a~~G~-----~V~l~--d~--~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 382 (715)
T PRK11730 313 VKQAAVLGA-GIMGGGIAYQSASKGV-----PVIMK--DI--NQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIR 382 (715)
T ss_pred cceEEEECC-chhHHHHHHHHHhCCC-----eEEEE--eC--CHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE
Confidence 358999995 9999999999999886 36654 33 3333221 1000 10000 01123566
Q ss_pred EecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHHH-------
Q 019713 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALICL------- 233 (337)
Q Consensus 162 i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~~------- 233 (337)
.++ ++++++|||+||.+. .++.++.+++.++|+++++|++ |++||.... ++.++.
T Consensus 383 ~~~-~~~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSsl~i~~la~~~~~p~r 445 (715)
T PRK11730 383 PTL-DYAGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDT--ILASNTSTISISLLAKALKRPEN 445 (715)
T ss_pred EeC-CHHHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHHHhhcCCCcc
Confidence 654 568899999999985 5678999999999999988887 479998764 444442
Q ss_pred ----HHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCccccc
Q 019713 234 ----KNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYDKVS 271 (337)
Q Consensus 234 ----k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~~V~ 271 (337)
+++ ++|. +++ |..|.-++.-....+++.+|..|--|+
T Consensus 446 ~~g~Hff-~P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~ 492 (715)
T PRK11730 446 FCGMHFF-NPVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTPIVVN 492 (715)
T ss_pred EEEEecC-CcccccceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEec
Confidence 333 2222 344 556777776666667788888775444
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.8e-08 Score=91.38 Aligned_cols=155 Identities=17% Similarity=0.127 Sum_probs=103.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch--hhHHHhHHHhHhhhc---------------cC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELEDSL---------------FP 155 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~--~~~l~g~a~DL~d~~---------------~~ 155 (337)
+.++..|+|||| |.+|+.+|+..+..|+ .|.|+ |.+++ .+..++..-.+.+.+ ..
T Consensus 8 ~~~~~~V~ivGa-G~MGSGIAQv~a~sg~-----~V~l~--d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~ 79 (298)
T KOG2304|consen 8 MAEIKNVAIVGA-GQMGSGIAQVAATSGL-----NVWLV--DANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDD 79 (298)
T ss_pred cccccceEEEcc-cccchhHHHHHHhcCC-----ceEEe--cCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHH
Confidence 456678999995 9999999999999887 36553 33221 111122222222111 01
Q ss_pred CcccEEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHH--
Q 019713 156 LLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALIC-- 232 (337)
Q Consensus 156 ~~~~v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~-- 232 (337)
.+.++..+++-..++.|||+||.+ +.+|+.|.+++.+.|++.|.+++ |++||.... ++.++
T Consensus 80 ~l~ri~~~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~--il~tNTSSl~lt~ia~~ 143 (298)
T KOG2304|consen 80 TLDRIKTSTNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSST--ILATNTSSLSLTDIASA 143 (298)
T ss_pred HHHHHHHcCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccce--EEeecccceeHHHHHhh
Confidence 123455566777889999998876 47899999999999999987787 478998754 44444
Q ss_pred ---------HHHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCcccccc
Q 019713 233 ---------LKNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYDKVSN 272 (337)
Q Consensus 233 ---------~k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~~V~~ 272 (337)
++++ +.+| ++| +.-|+-+|--+-.-+++.+|..+...++
T Consensus 144 ~~~~srf~GlHFf-NPvPvMKLvEVir~~~TS~eTf~~l~~f~k~~gKttVackD 197 (298)
T KOG2304|consen 144 TQRPSRFAGLHFF-NPVPVMKLVEVIRTDDTSDETFNALVDFGKAVGKTTVACKD 197 (298)
T ss_pred ccChhhhceeecc-CCchhHHHhhhhcCCCCCHHHHHHHHHHHHHhCCCceeecC
Confidence 3444 3333 566 6668877877777889999988755543
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.2e-07 Score=99.10 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=95.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhHHHh---HHH-hHhhhc----------cCCcccE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEG---VAM-ELEDSL----------FPLLREV 160 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~-~~l~~e~~~v~L~L~d~d~~~~~l~g---~a~-DL~d~~----------~~~~~~v 160 (337)
..||+|||| |.||..+|..++. .|+ +|.|+ |.+ ++.++. .+. .+.... .....++
T Consensus 304 i~~v~ViGa-G~mG~~iA~~~a~~~G~-----~V~l~--d~~--~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 373 (699)
T TIGR02440 304 IKKVGILGG-GLMGGGIASVTATKAGI-----PVRIK--DIN--PQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALI 373 (699)
T ss_pred ccEEEEECC-cHHHHHHHHHHHHHcCC-----eEEEE--eCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCe
Confidence 468999995 9999999999884 676 36654 333 232221 111 111110 0112356
Q ss_pred EEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHHH------
Q 019713 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALICL------ 233 (337)
Q Consensus 161 ~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~~------ 233 (337)
+.++ ++++++|||+||.+. .++.++.+++..+|++++.|++ |++||.... ++.++.
T Consensus 374 ~~~~-~~~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~--ilasnTS~l~i~~la~~~~~p~ 436 (699)
T TIGR02440 374 TGTT-DYRGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHT--IFASNTSSLPIGQIAAAASRPE 436 (699)
T ss_pred EEeC-ChHHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCc--EEEeCCCCCCHHHHHHhcCCcc
Confidence 6654 568999999999985 5678999999999999988887 478998764 444432
Q ss_pred -----HHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCccccc
Q 019713 234 -----KNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYDKVS 271 (337)
Q Consensus 234 -----k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~~V~ 271 (337)
+++ +.|. +++ |..|.-++.-....+++.+|..|--|+
T Consensus 437 r~~g~Hff-nP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~ 484 (699)
T TIGR02440 437 NVIGLHYF-SPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVA 484 (699)
T ss_pred cEEEEecC-CccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 222 2222 444 556777776666677888887774443
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-07 Score=100.08 Aligned_cols=148 Identities=16% Similarity=0.115 Sum_probs=97.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHh---HHHhHhhhc-----------cCCcccEE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG---VAMELEDSL-----------FPLLREVK 161 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g---~a~DL~d~~-----------~~~~~~v~ 161 (337)
..||+|||| |.||..+|..++..|+ +|.| +|. +++.++. ...+..+.. .....+++
T Consensus 335 i~~v~ViGa-G~MG~gIA~~~a~~G~-----~V~l--~d~--~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~ 404 (737)
T TIGR02441 335 VKTLAVLGA-GLMGAGIAQVSVDKGL-----KTVL--KDA--TPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLT 404 (737)
T ss_pred ccEEEEECC-CHhHHHHHHHHHhCCC-----cEEE--ecC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE
Confidence 368999995 9999999999999886 3665 333 3333221 111111100 01123566
Q ss_pred EecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHH--------
Q 019713 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALIC-------- 232 (337)
Q Consensus 162 i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~-------- 232 (337)
.++ ++++++|||+||.+. .+|.++.+++.++|+++++|+++ ++||.... ++.++
T Consensus 405 ~~~-~~~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~i--lasNTSsl~i~~la~~~~~p~r 467 (737)
T TIGR02441 405 PTL-DYSGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCI--IASNTSALPIKDIAAVSSRPEK 467 (737)
T ss_pred EeC-CHHHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcE--EEEcCCCCCHHHHHhhcCCccc
Confidence 654 578999999999985 56789999999999999888874 78998764 44443
Q ss_pred ---HHHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCccccc
Q 019713 233 ---LKNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYDKVS 271 (337)
Q Consensus 233 ---~k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~~V~ 271 (337)
++++ +.+. +++ |..|.-++......+++++|..|--|+
T Consensus 468 ~ig~Hff-~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~ 514 (737)
T TIGR02441 468 VIGMHYF-SPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVK 514 (737)
T ss_pred eEEEecc-CCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEC
Confidence 2333 2222 444 566887777667778888887764443
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.8e-07 Score=98.38 Aligned_cols=148 Identities=16% Similarity=0.130 Sum_probs=97.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHH-HcCCCCCCCceEEEeccccchhhHHHh---HHHhHhhhc-----------cCCcccE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQALEG---VAMELEDSL-----------FPLLREV 160 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~-~~~l~~e~~~v~L~L~d~d~~~~~l~g---~a~DL~d~~-----------~~~~~~v 160 (337)
..||+|||| |.||..+|..++ ..|+ +|.|+ |. +.+.++. ...+..+.. .....++
T Consensus 309 i~~v~ViGa-G~mG~giA~~~a~~~G~-----~V~l~--d~--~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 378 (708)
T PRK11154 309 VNKVGVLGG-GLMGGGIAYVTATKAGL-----PVRIK--DI--NPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALI 378 (708)
T ss_pred ccEEEEECC-chhhHHHHHHHHHHcCC-----eEEEE--eC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcE
Confidence 468999995 999999999998 7676 36654 33 2222221 111111000 0112357
Q ss_pred EEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHH-------
Q 019713 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALIC------- 232 (337)
Q Consensus 161 ~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~------- 232 (337)
+.++ ++++++|||+||.+. .+|.++.+++...|+++++|+++ ++||.... ++.++
T Consensus 379 ~~~~-~~~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~i--lasnTS~l~i~~la~~~~~p~ 441 (708)
T PRK11154 379 SGTT-DYRGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTI--FASNTSSLPIGQIAAAAARPE 441 (708)
T ss_pred EEeC-ChHHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcE--EEECCCCCCHHHHHHhcCccc
Confidence 7665 568999999999985 56789999999999999888974 78998764 44443
Q ss_pred ----HHHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCccccc
Q 019713 233 ----LKNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYDKVS 271 (337)
Q Consensus 233 ----~k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~~V~ 271 (337)
.+++ +.+. +++ |..|.-++.-.-..+++++|+.|--|+
T Consensus 442 r~ig~Hff-~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~ 489 (708)
T PRK11154 442 QVIGLHYF-SPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIVVR 489 (708)
T ss_pred ceEEEecC-CccccCceEEEECCCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 2222 2221 455 667887777777777888888775443
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.1e-06 Score=81.86 Aligned_cols=145 Identities=18% Similarity=0.182 Sum_probs=83.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHh---Hhhh---ccC---------CcccE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME---LEDS---LFP---------LLREV 160 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~D---L~d~---~~~---------~~~~v 160 (337)
.+||+|||+ |.+|..+|..++..+. .|.+ +|. +++.++..... +.+. ... ...++
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~-----~V~l--~d~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGF-----DVTI--YDI--SDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRI 72 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCC-----eEEE--EeC--CHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCe
Confidence 469999995 9999999999998775 2554 333 33332221111 1110 000 11355
Q ss_pred EEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHHHHHCC--
Q 019713 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALICLKNAP-- 237 (337)
Q Consensus 161 ~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~~k~s~-- 237 (337)
+.+++..+++++||+||++. .++.++.+++.+.+.+++.++++ +++|.... ++.++ +...
T Consensus 73 ~~~~d~~~a~~~aDlVieav--------------pe~~~~k~~~~~~l~~~~~~~~i--i~sntSt~~~~~~~-~~~~~~ 135 (287)
T PRK08293 73 TLTTDLAEAVKDADLVIEAV--------------PEDPEIKGDFYEELAKVAPEKTI--FATNSSTLLPSQFA-EATGRP 135 (287)
T ss_pred EEeCCHHHHhcCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCCCE--EEECcccCCHHHHH-hhcCCc
Confidence 66665556799999999985 23466777778888887666764 45666543 22332 2111
Q ss_pred ---------CCCC-----CeE-EecCchhHHHHHHHHHHHhCCCc
Q 019713 238 ---------SIPA-----KNF-HALTRLDENRAKCQLALKAGVFY 267 (337)
Q Consensus 238 ---------~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~ 267 (337)
+.+. +++ +..|.-++...-..+.+.+|..|
T Consensus 136 ~r~vg~Hf~~p~~~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~p 180 (287)
T PRK08293 136 EKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVP 180 (287)
T ss_pred ccEEEEcCCCCCCcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 1111 223 34566666555556667788665
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.3e-06 Score=82.89 Aligned_cols=145 Identities=17% Similarity=0.096 Sum_probs=84.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHh-H------H--------HhHhhhccCCcccE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG-V------A--------MELEDSLFPLLREV 160 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g-~------a--------~DL~d~~~~~~~~v 160 (337)
+.||+|||+ |.||..++..++..+. .|.+ +| .+.+.++. . . ++.++.. ....++
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~g~-----~V~~--~d--~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~-~~~~~l 71 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVAGY-----DVVM--VD--ISDAAVDRGLATITKSLDRLVKKGKMTEADKE-AALARI 71 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHCCC-----ceEE--Ee--CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH-HHHhCe
Confidence 458999995 9999999999998875 2554 33 34444321 0 0 1111111 011245
Q ss_pred EEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHC----
Q 019713 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA---- 236 (337)
Q Consensus 161 ~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s---- 236 (337)
+.++ +++++++||+||++. .++..+.+++.+.|.+++.+++++ +||-..+-...+.+..
T Consensus 72 ~~~~-~~~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~la~~~~~~~ 134 (282)
T PRK05808 72 TGTT-DLDDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITELAAATKRPD 134 (282)
T ss_pred EEeC-CHHHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHHHhhCCCc
Confidence 5554 467799999999985 334566778888888887778754 6766554222222222
Q ss_pred ------CCCCC------CeE-EecCchhHHHHHHHHHHHhCCCcc
Q 019713 237 ------PSIPA------KNF-HALTRLDENRAKCQLALKAGVFYD 268 (337)
Q Consensus 237 ------~~~p~------kvI-G~gT~LDs~R~~~~lA~~lgv~~~ 268 (337)
+..|. +++ |.+|.-++...-..+.+.+|..|-
T Consensus 135 r~ig~h~~~P~~~~~~vev~~g~~t~~e~~~~~~~l~~~lGk~pv 179 (282)
T PRK05808 135 KVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPV 179 (282)
T ss_pred ceEEeeccCCcccCccEEEeCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence 11111 222 444555554455566677887663
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.3e-06 Score=79.85 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=63.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhH-------HHhHhhhcc-------CCccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV-------AMELEDSLF-------PLLRE 159 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~-------a~DL~d~~~-------~~~~~ 159 (337)
.+..||+|||+ |.||..+|..|+..+. .|.+ +| .+.+.++.. ..++.+... .....
T Consensus 2 ~~~~~V~vIG~-G~mG~~iA~~l~~~G~-----~V~~--~d--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 71 (295)
T PLN02545 2 AEIKKVGVVGA-GQMGSGIAQLAAAAGM-----DVWL--LD--SDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGR 71 (295)
T ss_pred CCcCEEEEECC-CHHHHHHHHHHHhcCC-----eEEE--Ee--CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 45578999995 9999999999998774 2544 33 343333211 011111000 00112
Q ss_pred EEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 160 v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
+... ++++++++||+||++. .++.++...+.+.+.+++.++++ ++||-..
T Consensus 72 ~~~~-~~~~~~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~i--l~s~tS~ 121 (295)
T PLN02545 72 IRCT-TNLEELRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSAI--LASNTSS 121 (295)
T ss_pred eEee-CCHHHhCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCcE--EEECCCC
Confidence 3343 4567899999999985 33456666777777777677764 4455544
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.3e-06 Score=88.02 Aligned_cols=146 Identities=16% Similarity=0.086 Sum_probs=91.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHH----hHhhhc--c--------CCcccE
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM----ELEDSL--F--------PLLREV 160 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~----DL~d~~--~--------~~~~~v 160 (337)
+..||+|||+ |.||..+|..++..|+ +|.+ + |++++.++.... .+.... . ..+.++
T Consensus 4 ~~~kV~VIGa-G~MG~gIA~~la~aG~-----~V~l--~--d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i 73 (503)
T TIGR02279 4 NVVTVAVIGA-GAMGAGIAQVAASAGH-----QVLL--Y--DIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRL 73 (503)
T ss_pred CccEEEEECc-CHHHHHHHHHHHhCCC-----eEEE--E--eCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcc
Confidence 4568999995 9999999999999886 3555 3 344444432100 011100 0 012345
Q ss_pred EEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHH-------
Q 019713 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALIC------- 232 (337)
Q Consensus 161 ~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~------- 232 (337)
+.++ +++++++||+||.+. .++.++.+.+...+.+++.+++ |++||.... ++.++
T Consensus 74 ~~~~-~~~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~--IlasnTStl~i~~iA~~~~~p~ 136 (503)
T TIGR02279 74 IPVT-DLHALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADT--IIASNTSSLSITAIAAGLARPE 136 (503)
T ss_pred EEeC-CHHHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCe--EEEECCCCCCHHHHHHhcCccc
Confidence 5554 567899999999974 4557788888888999876776 478887654 33333
Q ss_pred ----HHHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCcc
Q 019713 233 ----LKNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYD 268 (337)
Q Consensus 233 ----~k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~ 268 (337)
.++. +.++ +++ |..|.-++......+.+.+|..|-
T Consensus 137 r~~G~HFf-~Papv~~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv 181 (503)
T TIGR02279 137 RVAGLHFF-NPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPV 181 (503)
T ss_pred ceEEEecc-CccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeee
Confidence 2232 2112 334 344677776666777888987663
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.7e-06 Score=79.46 Aligned_cols=108 Identities=14% Similarity=0.151 Sum_probs=62.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc---c------CCcccEEEe
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL---F------PLLREVKIG 163 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~---~------~~~~~v~i~ 163 (337)
|++.+||+|||+ |.||.+++..|+..+. .|.+ + |.+.+.++.....++... . ....+++.+
T Consensus 1 ~~~~~~I~vIGa-G~mG~~iA~~l~~~g~-----~V~~--~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 70 (311)
T PRK06130 1 MNPIQNLAIIGA-GTMGSGIAALFARKGL-----QVVL--I--DVMEGALERARGVIERALGVYAPLGIASAGMGRIRME 70 (311)
T ss_pred CCCccEEEEECC-CHHHHHHHHHHHhCCC-----eEEE--E--ECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe
Confidence 355679999995 9999999999998774 2544 3 334444332221111100 0 011234555
Q ss_pred cCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 164 t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
++..+++++||+||++.- ....+..++...+..+..++++ ++||...
T Consensus 71 ~~~~~~~~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~i--i~s~tsg 117 (311)
T PRK06130 71 AGLAAAVSGADLVIEAVP--------------EKLELKRDVFARLDGLCDPDTI--FATNTSG 117 (311)
T ss_pred CCHHHHhccCCEEEEecc--------------CcHHHHHHHHHHHHHhCCCCcE--EEECCCC
Confidence 555567899999999851 1234455566667776556654 4455443
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.3e-06 Score=78.65 Aligned_cols=104 Identities=14% Similarity=0.188 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHh-------Hhhhc--cC--------Ccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-------LEDSL--FP--------LLR 158 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~D-------L~d~~--~~--------~~~ 158 (337)
..||+|||+ |.||..+|..|+..|. .|.+ + |.+++.++..... +.... .. ...
T Consensus 3 i~~I~ViGa-G~mG~~iA~~la~~G~-----~V~l--~--d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~ 72 (291)
T PRK06035 3 IKVIGVVGS-GVMGQGIAQVFARTGY-----DVTI--V--DVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMA 72 (291)
T ss_pred CcEEEEECc-cHHHHHHHHHHHhcCC-----eEEE--E--eCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHh
Confidence 368999995 9999999999998875 2554 3 3444444321111 11000 00 112
Q ss_pred cEEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 159 ~v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
++..++ +.+++++||+||++. ..+.++.+++.+.|.+++.+++++ +||...
T Consensus 73 ~i~~~~-~~~~~~~aDlVieav--------------~e~~~~k~~~~~~l~~~~~~~~il--~S~tsg 123 (291)
T PRK06035 73 RIRTST-SYESLSDADFIVEAV--------------PEKLDLKRKVFAELERNVSPETII--ASNTSG 123 (291)
T ss_pred CcEeeC-CHHHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeEE--EEcCCC
Confidence 344444 447899999999985 223566777888888886777754 465543
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.6e-06 Score=85.96 Aligned_cols=147 Identities=14% Similarity=-0.002 Sum_probs=88.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhH---HHhHhhh-c--c--------CCccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV---AMELEDS-L--F--------PLLRE 159 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~---a~DL~d~-~--~--------~~~~~ 159 (337)
.+..||+|||| |.||..+|..++..|+ +|.+ + |++.+.++.. ..++.+. . . ..+.+
T Consensus 5 ~~i~~V~VIGa-G~MG~gIA~~la~aG~-----~V~l--~--D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~ 74 (507)
T PRK08268 5 PSIATVAVIGA-GAMGAGIAQVAAQAGH-----TVLL--Y--DARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALAR 74 (507)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC-----eEEE--E--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhC
Confidence 34578999995 9999999999998886 3554 3 3344443321 1111100 0 0 11224
Q ss_pred EEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHHH-----
Q 019713 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALICL----- 233 (337)
Q Consensus 160 v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~~----- 233 (337)
++.++ +++++++||+||.+. .++.++.+.+...+.++++++++ ++||...+ ++.++.
T Consensus 75 i~~~~-~~~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ai--lasntStl~i~~la~~~~~p 137 (507)
T PRK08268 75 LRPVE-ALADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCI--LATNTSSLSITAIAAALKHP 137 (507)
T ss_pred eEEeC-CHHHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcE--EEECCCCCCHHHHHhhcCCc
Confidence 66654 567899999999974 45677778888889988667774 56676533 223321
Q ss_pred ------HHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCcc
Q 019713 234 ------KNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYD 268 (337)
Q Consensus 234 ------k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~ 268 (337)
++. +.++ +++ |..|.-++......+++.+|..|-
T Consensus 138 ~r~~G~hff-~Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv 183 (507)
T PRK08268 138 ERVAGLHFF-NPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPV 183 (507)
T ss_pred ccEEEEeec-CCcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCceE
Confidence 122 1111 233 234677776666677889997763
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.7e-06 Score=78.93 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhh----c--cC--------CcccE
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS----L--FP--------LLREV 160 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~----~--~~--------~~~~v 160 (337)
+.+||+|||+ |.+|..+|..|+..+. .|.+ + |++++.++.....+... . .. ...++
T Consensus 3 ~~~kI~vIGa-G~mG~~iA~~la~~G~-----~V~l--~--d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 72 (292)
T PRK07530 3 AIKKVGVIGA-GQMGNGIAHVCALAGY-----DVLL--N--DVSADRLEAGLATINGNLARQVAKGKISEEARAAALARI 72 (292)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence 3468999995 9999999999998875 2554 3 34444443221111110 0 00 01235
Q ss_pred EEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 161 ~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
+.++ +++++++||+||++. .++.++.+.+.+.|.+.+.+++++ +||...
T Consensus 73 ~~~~-~~~~~~~aD~Vieav--------------pe~~~~k~~~~~~l~~~~~~~~ii--~s~ts~ 121 (292)
T PRK07530 73 STAT-DLEDLADCDLVIEAA--------------TEDETVKRKIFAQLCPVLKPEAIL--ATNTSS 121 (292)
T ss_pred EeeC-CHHHhcCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEcCCC
Confidence 5544 467899999999985 122355556666777776777754 456543
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=76.78 Aligned_cols=103 Identities=15% Similarity=0.172 Sum_probs=62.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhh----hc-c---------CCcccEEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED----SL-F---------PLLREVKI 162 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d----~~-~---------~~~~~v~i 162 (337)
.||+|||+ |.||..+|..|+..+. .|.++ | ++++.++.....+.+ .. . ....+++.
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~-----~V~~~--d--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 71 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF-----QTTLV--D--IKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY 71 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC-----cEEEE--e--CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 58999995 9999999999998775 25543 3 343443322111110 00 0 01123556
Q ss_pred ecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 163 ~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
+++..+++++||+||++.. ++..+.+.+...+.+++.++++ +++|..
T Consensus 72 ~~~~~~~~~~aD~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~i--l~~~tS 118 (288)
T PRK09260 72 SLDLKAAVADADLVIEAVP--------------EKLELKKAVFETADAHAPAECY--IATNTS 118 (288)
T ss_pred eCcHHHhhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCcE--EEEcCC
Confidence 6555578999999998752 2345556666667777677764 344443
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.4e-06 Score=71.81 Aligned_cols=97 Identities=24% Similarity=0.251 Sum_probs=61.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc------cCCcccEEEecCcccccC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL------FPLLREVKIGINPYELFE 171 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~------~~~~~~v~i~t~~~eal~ 171 (337)
||+|+|| |+.|.++|..|+..+. .|.| +.. +++.++... -.+.. ..+..++.+++|..++++
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~-----~V~l--~~~--~~~~~~~i~--~~~~n~~~~~~~~l~~~i~~t~dl~~a~~ 68 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGH-----EVTL--WGR--DEEQIEEIN--ETRQNPKYLPGIKLPENIKATTDLEEALE 68 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTE-----EEEE--ETS--CHHHHHHHH--HHTSETTTSTTSBEETTEEEESSHHHHHT
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC-----EEEE--Eec--cHHHHHHHH--HhCCCCCCCCCcccCcccccccCHHHHhC
Confidence 8999995 9999999999999884 3555 333 333333221 11211 112246778877778999
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+||+||++. | ...++++++.|..+..++..+|+++
T Consensus 69 ~ad~Iiiav--P--------------s~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 69 DADIIIIAV--P--------------SQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp T-SEEEE-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred cccEEEecc--c--------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence 999999874 2 2346778888888765666666654
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.8e-05 Score=67.62 Aligned_cols=96 Identities=25% Similarity=0.240 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
||+++|+| +|++|++++..++..+. +|.+- .-+.++++++.+.++. + .++. ....++.++||+
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~-----eV~ig---s~r~~~~~~a~a~~l~----~---~i~~-~~~~dA~~~aDV 63 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGH-----EVIIG---SSRGPKALAAAAAALG----P---LITG-GSNEDAAALADV 63 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCC-----eEEEe---cCCChhHHHHHHHhhc----c---cccc-CChHHHHhcCCE
Confidence 68999999 59999999999999885 35542 2334555555444333 2 2333 346789999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
||++. | .+-+.++.+.++.. -.+-+||-+|||.
T Consensus 64 VvLAV--P--------------~~a~~~v~~~l~~~-~~~KIvID~tnp~ 96 (211)
T COG2085 64 VVLAV--P--------------FEAIPDVLAELRDA-LGGKIVIDATNPI 96 (211)
T ss_pred EEEec--c--------------HHHHHhHHHHHHHH-hCCeEEEecCCCc
Confidence 99985 2 12234444555543 2356889999994
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.8e-05 Score=71.32 Aligned_cols=104 Identities=21% Similarity=0.114 Sum_probs=63.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhcc--CCcccEEEecCcccccCCCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~--~~~~~v~i~t~~~eal~dAD 174 (337)
|||+|||++|.||.+++..|+..+. .|.+ + +++.++++..+.+..+... ....++.. ++..++++++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~-----~V~v--~--~r~~~~~~~l~~~~~~~~~~~g~~~~~~~-~~~~ea~~~aD 70 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN-----KIII--G--SRDLEKAEEAAAKALEELGHGGSDIKVTG-ADNAEAAKRAD 70 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-----EEEE--E--EcCHHHHHHHHHHHHhhccccCCCceEEE-eChHHHHhcCC
Confidence 5899998569999999999998763 2544 2 4555666655444433211 11112222 34568899999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
+||++.. .+.+.++.+.+... -.+.+||-++||.+.
T Consensus 71 vVilavp----------------~~~~~~~l~~l~~~-l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 71 VVILAVP----------------WDHVLKTLESLRDE-LSGKLVISPVVPLAS 106 (219)
T ss_pred EEEEECC----------------HHHHHHHHHHHHHh-ccCCEEEEeccCcee
Confidence 9999852 12234444445443 234578889999754
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.4e-05 Score=80.36 Aligned_cols=106 Identities=13% Similarity=0.155 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhH-------h---hhccCCcccEEEecC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL-------E---DSLFPLLREVKIGIN 165 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL-------~---d~~~~~~~~v~i~t~ 165 (337)
.+||+|||+ |.||..+|..|+..|. .|.+ + |+++++++.....+ . ........+++..++
T Consensus 4 i~kIavIG~-G~MG~~iA~~la~~G~-----~V~v--~--D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~ 73 (495)
T PRK07531 4 IMKAACIGG-GVIGGGWAARFLLAGI-----DVAV--F--DPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCAS 73 (495)
T ss_pred cCEEEEECc-CHHHHHHHHHHHhCCC-----eEEE--E--eCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCC
Confidence 358999995 9999999999999886 2554 3 34444443221100 0 000000123556555
Q ss_pred cccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 166 ~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
..+++++||+|+.+. .++.++.+++...|.+++.+++ |+.||....
T Consensus 74 ~~ea~~~aD~Vieav--------------pe~~~vk~~l~~~l~~~~~~~~--iI~SsTsgi 119 (495)
T PRK07531 74 LAEAVAGADWIQESV--------------PERLDLKRRVLAEIDAAARPDA--LIGSSTSGF 119 (495)
T ss_pred HHHHhcCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCc--EEEEcCCCC
Confidence 557899999999874 2335666666677877766665 467777654
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.1e-05 Score=63.85 Aligned_cols=95 Identities=22% Similarity=0.243 Sum_probs=61.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-CcccccCCCcEE
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEWA 176 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~~~eal~dADvV 176 (337)
||+||| +|++|.+++..|...+... ..|.+. .++++++++..+.++. +.+.. +..+++++||+|
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~~~--~~v~~~---~~r~~~~~~~~~~~~~---------~~~~~~~~~~~~~~advv 65 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGIKP--HEVIIV---SSRSPEKAAELAKEYG---------VQATADDNEEAAQEADVV 65 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS-G--GEEEEE---EESSHHHHHHHHHHCT---------TEEESEEHHHHHHHTSEE
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCc--eeEEee---ccCcHHHHHHHHHhhc---------cccccCChHHhhccCCEE
Confidence 899999 5999999999999988622 234432 2567777665433222 22233 567889999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
|++.- | +.+.++.+.+... .++..+|-++||
T Consensus 66 ilav~----p------------~~~~~v~~~i~~~-~~~~~vis~~ag 96 (96)
T PF03807_consen 66 ILAVK----P------------QQLPEVLSEIPHL-LKGKLVISIAAG 96 (96)
T ss_dssp EE-S-----G------------GGHHHHHHHHHHH-HTTSEEEEESTT
T ss_pred EEEEC----H------------HHHHHHHHHHhhc-cCCCEEEEeCCC
Confidence 99851 1 2355566666333 567788887775
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.91 E-value=3e-05 Score=69.69 Aligned_cols=120 Identities=17% Similarity=0.187 Sum_probs=66.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC--------------cccEEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--------------LREVKI 162 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~--------------~~~v~i 162 (337)
|||+||| .|.||..+|..|+..|. .|.- + |.++++.+.. .+...++ ..+++.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~-----~V~g--~--D~~~~~v~~l----~~g~~p~~E~~l~~ll~~~~~~~~l~~ 66 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGH-----QVIG--V--DIDEEKVEAL----NNGELPIYEPGLDELLKENVSAGRLRA 66 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS-----EEEE--E---S-HHHHHHH----HTTSSSS-CTTHHHHHHHHHHTTSEEE
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCC-----EEEE--E--eCChHHHHHH----hhccccccccchhhhhccccccccchh
Confidence 7999999 69999999999999986 2432 3 4444444332 1111110 136677
Q ss_pred ecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC-Cchh----HHHHHHHHC
Q 019713 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN-PCNT----NALICLKNA 236 (337)
Q Consensus 163 ~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN-Pvd~----~t~i~~k~s 236 (337)
+++..+++++||+++++.+.|..++. +. +...+.+..+.|.++..++.+||+=|. |..+ +..++.+..
T Consensus 67 t~~~~~ai~~adv~~I~VpTP~~~~~-~~-----Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 67 TTDIEEAIKDADVVFICVPTPSDEDG-SP-----DLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp ESEHHHHHHH-SEEEE----EBETTT-SB-----ETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred hhhhhhhhhccceEEEecCCCccccC-Cc-----cHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 77667779999999999987765422 11 234455566666666566666555553 4433 334445544
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.90 E-value=9.2e-05 Score=71.32 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=60.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHH-------hHhhhc-------cCCcccEE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-------ELEDSL-------FPLLREVK 161 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~-------DL~d~~-------~~~~~~v~ 161 (337)
++||+||| +|.+|.+++..|+..|. .|.+ + |++++.++.... .+.+.. .....+++
T Consensus 2 ~~~V~VIG-~G~mG~~iA~~la~~G~-----~V~v--~--d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~ 71 (308)
T PRK06129 2 MGSVAIIG-AGLIGRAWAIVFARAGH-----EVRL--W--DADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIR 71 (308)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHHCCC-----eeEE--E--eCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeE
Confidence 46899999 59999999999999875 2554 3 334333332100 011110 01122456
Q ss_pred EecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 162 i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
.+++..+++++||+|+++.. .+..+.+.+.+.+.+...++++ +.||...
T Consensus 72 ~~~~~~~a~~~ad~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~i--i~ssts~ 120 (308)
T PRK06129 72 VTDSLADAVADADYVQESAP--------------ENLELKRALFAELDALAPPHAI--LASSTSA 120 (308)
T ss_pred EECcHHHhhCCCCEEEECCc--------------CCHHHHHHHHHHHHHhCCCcce--EEEeCCC
Confidence 66555568899999998751 2234455566667776444443 3566543
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00062 Score=67.69 Aligned_cols=98 Identities=14% Similarity=0.106 Sum_probs=62.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHH-----------HhHhhhccCCcccEEEecC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA-----------MELEDSLFPLLREVKIGIN 165 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a-----------~DL~d~~~~~~~~v~i~t~ 165 (337)
|||+||| +|.||-..+-.|+..|. .|.. +|+|. ++.+.+- .+|.... ....+.+.|+|
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GH-----eVv~--vDid~--~KV~~ln~g~~PI~EpgLe~ll~~~-~~~gRl~fTtd 69 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGH-----EVVC--VDIDE--SKVELLNKGISPIYEPGLEELLKEN-LASGRLRFTTD 69 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCC-----eEEE--EeCCH--HHHHHHhCCCCCCcCccHHHHHHhc-cccCcEEEEcC
Confidence 7999999 69999999999998774 2443 44543 3332210 1111111 11134788888
Q ss_pred cccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhh
Q 019713 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (337)
Q Consensus 166 ~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~ 211 (337)
-.++++++|+++++.|.|.++..+ .+...+...++.|.++
T Consensus 70 ~~~a~~~adv~fIavgTP~~~dg~------aDl~~V~ava~~i~~~ 109 (414)
T COG1004 70 YEEAVKDADVVFIAVGTPPDEDGS------ADLSYVEAVAKDIGEI 109 (414)
T ss_pred HHHHHhcCCEEEEEcCCCCCCCCC------ccHHHHHHHHHHHHhh
Confidence 788999999999999988765221 2345566666666665
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00027 Score=67.75 Aligned_cols=105 Identities=21% Similarity=0.248 Sum_probs=60.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc----cCCcccEEEecCcccccC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYELFE 171 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~----~~~~~~v~i~t~~~eal~ 171 (337)
||||+|||+ |.+|..++..|+..+. .+.+ + +++.+.++....+..+.. ......+...++..+.++
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGH-----DVTL--W--ARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE--E--ECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 579999995 9999999999998764 2544 3 344444443322110000 001113444445456788
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
++|+||++... ..+.++.+.+..+..++.++|.++|-++
T Consensus 71 ~~D~vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 71 DADLILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred CCCEEEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 99999987521 1234444455554456667777776544
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00019 Score=70.35 Aligned_cols=107 Identities=14% Similarity=0.034 Sum_probs=66.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc-----cCCcccEEEecCccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-----FPLLREVKIGINPYE 168 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~-----~~~~~~v~i~t~~~e 168 (337)
++++||+|||| |.+|..++..|+..+. +.+.. ++++..+....+-.... ..+..++..+++..+
T Consensus 5 ~~~mkI~IiGa-Ga~G~alA~~La~~g~------v~l~~----~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~ 73 (341)
T PRK12439 5 KREPKVVVLGG-GSWGTTVASICARRGP------TLQWV----RSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAE 73 (341)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHHCCC------EEEEe----CCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHH
Confidence 56789999995 9999999999997762 44432 23333332211100000 011124566666667
Q ss_pred ccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 169 al~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
+++++|+||++.- ...++++.+.|+.+..++..+|.++|-.+.
T Consensus 74 a~~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 74 AANCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred HHhcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 8999999998751 234566666666655567778888886653
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00022 Score=62.33 Aligned_cols=65 Identities=22% Similarity=0.332 Sum_probs=43.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|+||+||| .|.+|+.++..|+..+. .|.. + |++.++++.. .+. ......+..+.++++|+
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~-----~v~~--~--d~~~~~~~~~----~~~------g~~~~~s~~e~~~~~dv 60 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGY-----EVTV--Y--DRSPEKAEAL----AEA------GAEVADSPAEAAEQADV 60 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT-----EEEE--E--ESSHHHHHHH----HHT------TEEEESSHHHHHHHBSE
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCC-----eEEe--e--ccchhhhhhh----HHh------hhhhhhhhhhHhhcccc
Confidence 68999999 59999999999998876 2443 3 4555565543 211 14555567788899999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
|+++-
T Consensus 61 vi~~v 65 (163)
T PF03446_consen 61 VILCV 65 (163)
T ss_dssp EEE-S
T ss_pred eEeec
Confidence 99864
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00048 Score=67.11 Aligned_cols=111 Identities=19% Similarity=0.173 Sum_probs=72.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhh--ccC------CcccEEEecCcc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS--LFP------LLREVKIGINPY 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~--~~~------~~~~v~i~t~~~ 167 (337)
++||+|+|| |.-|.++|..|+..+. +|.|.-.+ ++..+ |+... ... +...+..++|..
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~-----~V~lw~r~----~~~~~----~i~~~~~N~~yLp~i~lp~~l~at~Dl~ 66 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGH-----EVRLWGRD----EEIVA----EINETRENPKYLPGILLPPNLKATTDLA 66 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCC-----eeEEEecC----HHHHH----HHHhcCcCccccCCccCCcccccccCHH
Confidence 479999995 9999999999999883 36665332 22222 22221 111 224566778888
Q ss_pred cccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-----CCchhHHHHHHHHC
Q 019713 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-----NPCNTNALICLKNA 236 (337)
Q Consensus 168 eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt-----NPvd~~t~i~~k~s 236 (337)
+++++||+||++. | .+.++++.+.++.+-.++++++.++ ++...+..++.+..
T Consensus 67 ~a~~~ad~iv~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l 124 (329)
T COG0240 67 EALDGADIIVIAV--P--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEEL 124 (329)
T ss_pred HHHhcCCEEEEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHc
Confidence 9999999999974 2 3556666666654445666777666 34455666666654
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0011 Score=66.35 Aligned_cols=114 Identities=11% Similarity=0.151 Sum_probs=61.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHh--------HhhhccCCcccEEEecCccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--------LEDSLFPLLREVKIGINPYE 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~D--------L~d~~~~~~~~v~i~t~~~e 168 (337)
|||+||| +|.||..+|..++. +. .|..+ |+++++++..... +++.......+++.+++..+
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA~-G~-----~Vigv----D~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~ 69 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIAQ-NH-----EVVAL----DILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE 69 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHHh-CC-----cEEEE----ECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh
Confidence 5899999 59999999987775 43 25543 4444554432211 11100001123444455567
Q ss_pred ccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-CCchh
Q 019713 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNT 227 (337)
Q Consensus 169 al~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt-NPvd~ 227 (337)
+.++||+||++...|-...... -+...+++..+.|.+. .++.+||+-| =|..+
T Consensus 70 ~~~~ad~vii~Vpt~~~~k~~~-----~dl~~v~~v~~~i~~~-~~g~lVV~~STv~pgt 123 (388)
T PRK15057 70 AYRDADYVIIATPTDYDPKTNY-----FNTSSVESVIKDVVEI-NPYAVMVIKSTVPVGF 123 (388)
T ss_pred hhcCCCEEEEeCCCCCccCCCC-----cChHHHHHHHHHHHhc-CCCCEEEEeeecCCch
Confidence 7899999999876553111111 1233444444555553 5665555444 34443
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00072 Score=63.91 Aligned_cols=100 Identities=10% Similarity=0.179 Sum_probs=62.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+|||+ |.||..++..|...+.+.. ..+.+ .+++.++++.. .+.. ..+....+..+.++++|+|
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~-~~v~v----~~r~~~~~~~~----~~~~----~g~~~~~~~~~~~~~aDiV 66 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKP-SQLTI----TNRTPAKAYHI----KERY----PGIHVAKTIEEVISQSDLI 66 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCc-ceEEE----ECCCHHHHHHH----HHHc----CCeEEECCHHHHHHhCCEE
Confidence 48999995 9999999999988775321 12433 24555554432 1111 1234445556678999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
|++.- -..+.++.+.+..+..++.+||-++|++.
T Consensus 67 ilav~----------------p~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 67 FICVK----------------PLDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred EEecC----------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 99851 12244455555544345678888998764
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00077 Score=66.88 Aligned_cols=80 Identities=11% Similarity=0.101 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC----CCCCCceEEEeccccchhhHHHhHHHhHhhhc--------cCCcccEEE
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV----LGPDQPIALKLLGSERSLQALEGVAMELEDSL--------FPLLREVKI 162 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l----~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~--------~~~~~~v~i 162 (337)
+.+||+|||| |..|.++|..|+..+. |+. .|.|...+.+.+.++ .+.++++.. ..+..++..
T Consensus 10 ~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~--~V~lw~~~~~~~~~~---~~~~in~~~~N~~ylp~~~Lp~ni~~ 83 (365)
T PTZ00345 10 GPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHN--EVRMWVLEEIVEGEK---LSDIINTKHENVKYLPGIKLPDNIVA 83 (365)
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCC--eEEEEEecccccchH---HHHHHHhcCCCcccCCCCcCCCceEE
Confidence 4579999995 9999999999998762 332 466654432211111 222333211 123456777
Q ss_pred ecCcccccCCCcEEEEec
Q 019713 163 GINPYELFEDAEWALLIG 180 (337)
Q Consensus 163 ~t~~~eal~dADvVIita 180 (337)
++|..+++++||+||++.
T Consensus 84 tsdl~eav~~aDiIvlAV 101 (365)
T PTZ00345 84 VSDLKEAVEDADLLIFVI 101 (365)
T ss_pred ecCHHHHHhcCCEEEEEc
Confidence 877778999999998874
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00057 Score=70.03 Aligned_cols=122 Identities=13% Similarity=0.168 Sum_probs=69.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHh--------HhhhccC-CcccEEEecCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--------LEDSLFP-LLREVKIGINP 166 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~D--------L~d~~~~-~~~~v~i~t~~ 166 (337)
+|||+||| +|.||..+|-.|+..|.- ..|.. + |.++++.+.+-.. +++.... ...+.+.+++.
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g---~~V~g--v--D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~ 72 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCPD---IEVVV--V--DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDV 72 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCC---CeEEE--E--ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCH
Confidence 57999999 599999999999987531 12433 3 3344444432111 1111000 11246677666
Q ss_pred ccccCCCcEEEEecccCCCCCC-chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEe-CCCchh
Q 019713 167 YELFEDAEWALLIGAKPRGPGM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVV-GNPCNT 227 (337)
Q Consensus 167 ~eal~dADvVIitag~prk~g~-~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvv-tNPvd~ 227 (337)
.+++++||++|++.+.|.+... .. + -.-+..-+.+.++.|.++..++.+||+= |-|..+
T Consensus 73 ~~~i~~advi~I~V~TP~~~~g~~~-~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gt 133 (473)
T PLN02353 73 EKHVAEADIVFVSVNTPTKTRGLGA-G-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (473)
T ss_pred HHHHhcCCEEEEEeCCCCCCCCCcC-C-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCh
Confidence 6789999999999988864321 00 0 0113345666777777764444443322 456544
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00069 Score=67.90 Aligned_cols=110 Identities=13% Similarity=0.132 Sum_probs=62.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhH--------hhhccC-C-cccEEEecCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL--------EDSLFP-L-LREVKIGINP 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL--------~d~~~~-~-~~~v~i~t~~ 166 (337)
|||+||| +|.||..+|..|+..|. .|.. + |++.++.+...... ++.... . ..+++.+++.
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~-----~V~~--~--d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~ 70 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGH-----EVTG--V--DIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDY 70 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCC-----eEEE--E--ECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCH
Confidence 4899999 59999999999998775 2443 3 44445544322100 000000 0 1235555555
Q ss_pred ccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 167 ~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.+++++||+||++.+.|..... . -+...+.+..+.|.++..++.+||+.|
T Consensus 71 ~~~~~~advvii~vpt~~~~~~-~-----~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 71 EDAIRDADVIIICVPTPLKEDG-S-----PDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred HHHHhhCCEEEEEeCCCCCCCC-C-----cChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 5679999999998876643211 1 123334444455555445565555544
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00073 Score=65.38 Aligned_cols=103 Identities=15% Similarity=0.248 Sum_probs=61.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc----cCCcccEEEecCccccc-C
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYELF-E 171 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~----~~~~~~v~i~t~~~eal-~ 171 (337)
|||+|||| |.+|..++..|+..+. .|.+. +++++.++....+-.+.. ..+..++..+++..+++ .
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~-----~V~l~----~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 70 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI-----SVNLW----GRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD 70 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC-----eEEEE----ecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC
Confidence 58999995 9999999999998763 35543 334444433222100110 01223455665555666 5
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHh-hcCCCeEEEEeCCCc
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA-VASRNVKVIVVGNPC 225 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~-~a~p~aivIvvtNPv 225 (337)
++|+||++.- ..-+.++.+.+.. +..++..|+..+|=.
T Consensus 71 ~~Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 71 NATCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred CCCEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 8999998751 2334555555554 435666777788766
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00071 Score=65.56 Aligned_cols=77 Identities=26% Similarity=0.292 Sum_probs=47.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhh----ccCCcccEEEecCcccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS----LFPLLREVKIGINPYEL 169 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~----~~~~~~~v~i~t~~~ea 169 (337)
..+|||+|||+ |.+|..++..|+..+. .|.+ + +++.++++.....-... ...+..++..+++..++
T Consensus 2 ~~~m~I~iIG~-G~mG~~ia~~L~~~G~-----~V~~--~--~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~ 71 (328)
T PRK14618 2 HHGMRVAVLGA-GAWGTALAVLAASKGV-----PVRL--W--ARRPEFAAALAAERENREYLPGVALPAELYPTADPEEA 71 (328)
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHH
Confidence 34679999995 9999999999998774 2554 3 34444444332111000 00111235555556677
Q ss_pred cCCCcEEEEec
Q 019713 170 FEDAEWALLIG 180 (337)
Q Consensus 170 l~dADvVIita 180 (337)
++++|+||++.
T Consensus 72 ~~~aD~Vi~~v 82 (328)
T PRK14618 72 LAGADFAVVAV 82 (328)
T ss_pred HcCCCEEEEEC
Confidence 89999999874
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00087 Score=65.96 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=48.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCC---CCceEEEeccccc-hhhHHHhHHHhHhhhc----cCCcccEEEecCcccc
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGP---DQPIALKLLGSER-SLQALEGVAMELEDSL----FPLLREVKIGINPYEL 169 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e---~~~v~L~L~d~d~-~~~~l~g~a~DL~d~~----~~~~~~v~i~t~~~ea 169 (337)
||+|||| |..|.++|..|+..+...+ +..|.|+-.+.+. +++..+..-.+.+... ..+..+++.++|..++
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 7999995 9999999999998763221 1347665332111 2222222111111111 1123457777776788
Q ss_pred cCCCcEEEEec
Q 019713 170 FEDAEWALLIG 180 (337)
Q Consensus 170 l~dADvVIita 180 (337)
+++||+||++.
T Consensus 80 l~~ADiIIlAV 90 (342)
T TIGR03376 80 AKGADILVFVI 90 (342)
T ss_pred HhcCCEEEEEC
Confidence 99999998874
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0008 Score=65.27 Aligned_cols=108 Identities=23% Similarity=0.214 Sum_probs=59.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhcc-C---CcccEEEecCcccccC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-P---LLREVKIGINPYELFE 171 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~-~---~~~~v~i~t~~~eal~ 171 (337)
++||+|||+ |.||..++..|+..|. .|.+ ++.+...+.+......+.+... . ...++..+ .+.++++
T Consensus 2 ~mkI~IiG~-G~mG~~~A~~L~~~G~-----~V~~--~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 72 (341)
T PRK08229 2 MARICVLGA-GSIGCYLGGRLAAAGA-----DVTL--IGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFS-TDPAALA 72 (341)
T ss_pred CceEEEECC-CHHHHHHHHHHHhcCC-----cEEE--EecHHHHHHHHhcCceeecCCCcceecccceeEec-cChhhcc
Confidence 479999995 9999999999998874 2554 3332111111100000100000 0 00123333 3447789
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhH
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~ 228 (337)
++|+||++...+. ..++.+.|.....++.+|+..+|..+..
T Consensus 73 ~~D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 73 TADLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred CCCEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 9999999863211 1233445555546777888888987643
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00058 Score=64.96 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=59.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHH---hHhhhccCCcccEEEecCcccccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM---ELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~---DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
|||+|+|+ |.+|..++..|+..+. .|.+. ++ .++++.... .+.+............++..+..+++
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~-----~V~~~----~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR-----DVTFL----VR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPF 69 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC-----ceEEE----ec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCC
Confidence 58999995 9999999999998764 25543 23 333332211 01100000000111223333445899
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~ 230 (337)
|+||++...+ -..++.+.|..+..++..||.+.|.++....
T Consensus 70 d~vilavk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~ 110 (305)
T PRK12921 70 DLVILAVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQ 110 (305)
T ss_pred CEEEEEeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHH
Confidence 9999875211 1344445555544567788889998865443
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0013 Score=62.39 Aligned_cols=105 Identities=18% Similarity=0.165 Sum_probs=58.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHH---hHhhhccCCcccEEEecCcccccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM---ELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~---DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
|||+|||| |.||..++..|+..+. .|.+. +++.+.++.... .+.+. ....++.. .++.++.+++
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~-----~V~~~----~r~~~~~~~~~~~g~~~~~~--~~~~~~~~-~~~~~~~~~~ 67 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH-----DVTLV----ARRGAHLDALNENGLRLEDG--EITVPVLA-ADDPAELGPQ 67 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-----eEEEE----ECChHHHHHHHHcCCcccCC--ceeecccC-CCChhHcCCC
Confidence 58999995 9999999999998763 35553 233333332211 11000 00001112 2333445899
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~ 230 (337)
|+||++.... -..++.+.|..+-.++..||...|.++....
T Consensus 68 d~vila~k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~ 108 (304)
T PRK06522 68 DLVILAVKAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLEE 108 (304)
T ss_pred CEEEEecccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHHH
Confidence 9999985211 1233444444443566788899998875443
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0019 Score=61.45 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=45.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
+||+||| +|+||.+++..|...+.+..+ .|.. .+++.++++.. .+.. .+...++..+.+++||+|
T Consensus 3 ~~IgfIG-~G~MG~aia~~L~~~g~~~~~-~I~v----~~r~~~~~~~l----~~~~-----g~~~~~~~~e~~~~aDiI 67 (272)
T PRK12491 3 KQIGFIG-CGNMGIAMIGGMINKNIVSPD-QIIC----SDLNVSNLKNA----SDKY-----GITITTNNNEVANSADIL 67 (272)
T ss_pred CeEEEEC-ccHHHHHHHHHHHHCCCCCCc-eEEE----ECCCHHHHHHH----HHhc-----CcEEeCCcHHHHhhCCEE
Confidence 5899999 599999999999988864321 2333 35555555432 1111 133444555678999999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
|++.
T Consensus 68 iLav 71 (272)
T PRK12491 68 ILSI 71 (272)
T ss_pred EEEe
Confidence 9875
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.002 Score=60.35 Aligned_cols=99 Identities=18% Similarity=0.253 Sum_probs=58.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+||| .|.||..++..|...+...+ ..+..+ .+++.++++. +.+. .+.+..+..+.++++|+|
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~g~~~~---~~i~v~-~~r~~~~~~~----~~~~------g~~~~~~~~e~~~~aDvV 65 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVASGVVPP---SRISTA-DDSNPARRDV----FQSL------GVKTAASNTEVVKSSDVI 65 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHCCCCCc---ceEEEE-eCCCHHHHHH----HHHc------CCEEeCChHHHHhcCCEE
Confidence 6899999 59999999999998775332 222222 1445455432 2211 233444556778899999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
|++. .| +.++++.+.+.....++..||..++...
T Consensus 66 il~v-~~---------------~~~~~vl~~l~~~~~~~~~iIs~~~g~~ 99 (266)
T PLN02688 66 ILAV-KP---------------QVVKDVLTELRPLLSKDKLLVSVAAGIT 99 (266)
T ss_pred EEEE-Cc---------------HHHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence 9885 22 2244444455444356666666655543
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0021 Score=67.12 Aligned_cols=118 Identities=14% Similarity=0.069 Sum_probs=65.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhh-----ccCCcccEEE--e-cC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS-----LFPLLREVKI--G-IN 165 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~-----~~~~~~~v~i--~-t~ 165 (337)
++.+.|.|+||+|.+|.+++..|+..|. .|.+. .++.++++....++.+. ......++.+ . -.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~-----~Vval----~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGF-----RVRAG----VRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 4446899999999999999999988774 24432 34445544333323211 0000011111 1 11
Q ss_pred c----ccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 166 P----YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 166 ~----~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+ .+++.++|+||.++|.......+-...+..|..-...+.+.+.+. .- ..||+++
T Consensus 149 D~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~a-gV-gRIV~VS 207 (576)
T PLN03209 149 KPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVA-KV-NHFILVT 207 (576)
T ss_pred CHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHh-CC-CEEEEEc
Confidence 1 245789999999887543221121223455666667777777664 22 3566655
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0038 Score=63.34 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=55.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+||||.|.+|..++..|...+. .|.+ + +++.+.+...+.++ .+...++..+++.+||+|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~-----~V~v--~--~r~~~~~~~~a~~~---------gv~~~~~~~e~~~~aDvV 62 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF-----EVIV--T--GRDPKKGKEVAKEL---------GVEYANDNIDAAKDADIV 62 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC-----EEEE--E--ECChHHHHHHHHHc---------CCeeccCHHHHhccCCEE
Confidence 5899998679999999999988664 2443 2 34444433222211 122334556778999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|++... ..+.++.+.+..+..++++|+-+++
T Consensus 63 Ilavp~----------------~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 63 IISVPI----------------NVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred EEecCH----------------HHHHHHHHHHHhhCCCCCEEEEccc
Confidence 997521 1223333444443356666666665
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0011 Score=56.31 Aligned_cols=102 Identities=20% Similarity=0.211 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
..+||+|||| |.||.+++..|...+. .|.- .+ .++.+..+..+..+ ....+ .+..+.+.+||
T Consensus 9 ~~l~I~iIGa-GrVG~~La~aL~~ag~-----~v~~-v~--srs~~sa~~a~~~~--------~~~~~-~~~~~~~~~aD 70 (127)
T PF10727_consen 9 ARLKIGIIGA-GRVGTALARALARAGH-----EVVG-VY--SRSPASAERAAAFI--------GAGAI-LDLEEILRDAD 70 (127)
T ss_dssp ---EEEEECT-SCCCCHHHHHHHHTTS-----EEEE-ES--SCHH-HHHHHHC----------TT------TTGGGCC-S
T ss_pred CccEEEEECC-CHHHHHHHHHHHHCCC-----eEEE-EE--eCCccccccccccc--------ccccc-cccccccccCC
Confidence 3579999995 9999999999998775 2322 22 33433333221111 12222 23557889999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhh--cCCCeEEEEeCC---CchhHHHH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV--ASRNVKVIVVGN---PCNTNALI 231 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~--a~p~aivIvvtN---Pvd~~t~i 231 (337)
+++++... ..+.++++.|.++ -.|+ .+++-+- +++++..+
T Consensus 71 lv~iavpD----------------daI~~va~~La~~~~~~~g-~iVvHtSGa~~~~vL~p~ 115 (127)
T PF10727_consen 71 LVFIAVPD----------------DAIAEVAEQLAQYGAWRPG-QIVVHTSGALGSDVLAPA 115 (127)
T ss_dssp EEEE-S-C----------------CHHHHHHHHHHCC--S-TT--EEEES-SS--GGGGHHH
T ss_pred EEEEEech----------------HHHHHHHHHHHHhccCCCC-cEEEECCCCChHHhhhhH
Confidence 99998521 2356677777764 2344 4555543 45666554
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0024 Score=53.11 Aligned_cols=95 Identities=23% Similarity=0.271 Sum_probs=54.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc--cCCcccEEEecCcccccCCCcE
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL--FPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~--~~~~~~v~i~t~~~eal~dADv 175 (337)
||+||||+|.+|..++..|....-+. + +.+++.... .|.. +.... ......+.+...+.+.+.++|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e----~-~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv 69 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFE----L-VALVSSSRS----AGKP--LSEVFPHPKGFEDLSVEDADPEELSDVDV 69 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEE----E-EEEEESTTT----TTSB--HHHTTGGGTTTEEEBEEETSGHHHTTESE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCcc----E-EEeeeeccc----cCCe--eehhccccccccceeEeecchhHhhcCCE
Confidence 79999999999999999998855432 2 122222210 1111 11111 0111244454456788999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
|+++.+ ...-+++.+.+.+ .+++||=.|
T Consensus 70 vf~a~~----------------~~~~~~~~~~~~~---~g~~ViD~s 97 (121)
T PF01118_consen 70 VFLALP----------------HGASKELAPKLLK---AGIKVIDLS 97 (121)
T ss_dssp EEE-SC----------------HHHHHHHHHHHHH---TTSEEEESS
T ss_pred EEecCc----------------hhHHHHHHHHHhh---CCcEEEeCC
Confidence 999853 2445666666643 455555444
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0037 Score=63.33 Aligned_cols=111 Identities=13% Similarity=0.105 Sum_probs=67.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc--hhhHHHhHHHhHhhhccCCcccEEEec-C-cccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER--SLQALEGVAMELEDSLFPLLREVKIGI-N-PYEL 169 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~--~~~~l~g~a~DL~d~~~~~~~~v~i~t-~-~~ea 169 (337)
++.|||.|+||+|+||++++..|...+. .|.. +|... ..+.+. .+. . ..++.... | ....
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~-----~V~~--ldr~~~~~~~~~~----~~~----~-~~~~~~~~~Di~~~~ 181 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD-----EVIV--IDNFFTGRKENLV----HLF----G-NPRFELIRHDVVEPI 181 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCC-----EEEE--EeCCCCccHhHhh----hhc----c-CCceEEEECcccccc
Confidence 4568999999999999999999998764 2433 22211 111111 111 0 01222211 1 2345
Q ss_pred cCCCcEEEEecccCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 FEDAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 l~dADvVIitag~pr--k~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.++|+||-+|+... ....+..+.+..|+.....+.+.+++. . +++|+++.
T Consensus 182 ~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~-g--~r~V~~SS 234 (436)
T PLN02166 182 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-G--ARFLLTST 234 (436)
T ss_pred ccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHh-C--CEEEEECc
Confidence 778999999886422 112244567789999889999988886 3 46777764
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0011 Score=65.47 Aligned_cols=129 Identities=16% Similarity=0.201 Sum_probs=71.5
Q ss_pred CccceeeeeeeccchhhhhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhh
Q 019713 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS 152 (337)
Q Consensus 73 ~~~gv~~~~~~~~~~~~~~~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~ 152 (337)
|.||.|.|.---+++. .+.+.+||.|+||+|+||++++..|...+. .|.. + ++..... +.+.
T Consensus 1 ~~~~~~~~~~~~~~~~---~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~-----~V~~--v--~r~~~~~------~~~~ 62 (370)
T PLN02695 1 ESYGAYTLAELEREPY---WPSEKLRICITGAGGFIASHIARRLKAEGH-----YIIA--S--DWKKNEH------MSED 62 (370)
T ss_pred CCccccchhhcCCCCC---CCCCCCEEEEECCccHHHHHHHHHHHhCCC-----EEEE--E--Eeccccc------cccc
Confidence 4678776643222222 345668999999999999999999988764 2432 2 2211100 0000
Q ss_pred ccCCcccEEEe-----cCcccccCCCcEEEEecccCCCCCC---chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 153 LFPLLREVKIG-----INPYELFEDAEWALLIGAKPRGPGM---ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 153 ~~~~~~~v~i~-----t~~~eal~dADvVIitag~prk~g~---~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
. ....+... ......++++|+||.+++.....+. ........|......+.+.+++. ... .+|.+|.
T Consensus 63 ~--~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~-~vk-~~V~~SS 137 (370)
T PLN02695 63 M--FCHEFHLVDLRVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARIN-GVK-RFFYASS 137 (370)
T ss_pred c--ccceEEECCCCCHHHHHHHHhCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHh-CCC-EEEEeCc
Confidence 0 00011111 0112346789999988764311111 22334667888888888888775 333 5666654
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0041 Score=57.38 Aligned_cols=72 Identities=15% Similarity=0.113 Sum_probs=43.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+.+||+|||+ |.+|.+++..|...+.... ..+. ..+ +.+.++++..+. . + .+..+.+..+.++++|
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~-~~i~--~~~-~~~~~~~~~~~~----~---~--~~~~~~~~~~~~~~~D 68 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYI-EEII--VSN-RSNVEKLDQLQA----R---Y--NVSTTTDWKQHVTSVD 68 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCc-CeEE--EEC-CCCHHHHHHHHH----H---c--CcEEeCChHHHHhcCC
Confidence 4579999995 9999999999987653211 0122 222 123344443221 1 1 1334455567789999
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+||++.
T Consensus 69 iViiav 74 (245)
T PRK07634 69 TIVLAM 74 (245)
T ss_pred EEEEec
Confidence 999874
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0016 Score=61.99 Aligned_cols=95 Identities=24% Similarity=0.322 Sum_probs=61.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
++||++||+ |+||.+++..|...+..... .|.+ .+++.++++. +.+.. +. . .+++..+...++|+
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~-~I~v----~~~~~e~~~~----l~~~~-g~--~--~~~~~~~~~~~adv 65 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPPE-EIIV----TNRSEEKRAA----LAAEY-GV--V--TTTDNQEAVEEADV 65 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCcc-eEEE----eCCCHHHHHH----HHHHc-CC--c--ccCcHHHHHhhCCE
Confidence 479999995 99999999999998854421 2433 4666666652 22211 21 2 24566688899999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
||++. || +.+.++.+.++.. .++-.||-+.
T Consensus 66 v~Lav----KP------------q~~~~vl~~l~~~-~~~~lvISia 95 (266)
T COG0345 66 VFLAV----KP------------QDLEEVLSKLKPL-TKDKLVISIA 95 (266)
T ss_pred EEEEe----Ch------------HhHHHHHHHhhcc-cCCCEEEEEe
Confidence 99986 44 4566777777652 4554444443
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0028 Score=59.40 Aligned_cols=96 Identities=22% Similarity=0.237 Sum_probs=57.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|+||+|||+ |.+|..++..|...+... ..+.+ .+++.+.++.....+ .+.+..+..+.+.++|+
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~--~~v~v----~~r~~~~~~~~~~~~---------g~~~~~~~~~~~~~adv 65 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPA--KDIIV----SDPSPEKRAALAEEY---------GVRAATDNQEAAQEADV 65 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCc--ceEEE----EcCCHHHHHHHHHhc---------CCeecCChHHHHhcCCE
Confidence 579999995 999999999998776411 12333 245555544321111 12333444566889999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
||++.. ...++++.+.+..+. +..||-++|-.
T Consensus 66 Vil~v~----------------~~~~~~v~~~l~~~~--~~~vvs~~~gi 97 (267)
T PRK11880 66 VVLAVK----------------PQVMEEVLSELKGQL--DKLVVSIAAGV 97 (267)
T ss_pred EEEEcC----------------HHHHHHHHHHHHhhc--CCEEEEecCCC
Confidence 998751 133555555555542 34666677654
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0024 Score=60.60 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=41.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+||| .|.||.+++..|...+. .|.. + |++++.++.. .+.. .+...+++.+++++||+|
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~-----~V~~--~--d~~~~~~~~a-~~~g--------~~~~~~~~~~~~~~aDlV 61 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGH-----TVYG--V--SRRESTCERA-IERG--------LVDEASTDLSLLKDCDLV 61 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCC-----EEEE--E--ECCHHHHHHH-HHCC--------CcccccCCHhHhcCCCEE
Confidence 4899999 59999999999988764 2443 3 4444444321 1110 011122344678999999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
|++.
T Consensus 62 ilav 65 (279)
T PRK07417 62 ILAL 65 (279)
T ss_pred EEcC
Confidence 9985
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.005 Score=58.56 Aligned_cols=103 Identities=20% Similarity=0.246 Sum_probs=59.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|+||+|||+ |.+|.+++..|...+.+.. ..+.+ ++.+ ..++++.. .... ..+.++.+..+.++++|+
T Consensus 1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~-~~V~~--~~r~-~~~~~~~l----~~~~----~~~~~~~~~~e~~~~aDv 67 (277)
T PRK06928 1 MEKIGFIGY-GSMADMIATKLLETEVATP-EEIIL--YSSS-KNEHFNQL----YDKY----PTVELADNEAEIFTKCDH 67 (277)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCc-ccEEE--EeCC-cHHHHHHH----HHHc----CCeEEeCCHHHHHhhCCE
Confidence 468999995 9999999999988774321 12433 2221 12222221 1111 123344455567899999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
||++.. .+.++++.+.+..+..++..||.+.|-++.
T Consensus 68 Vilavp----------------p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~ 103 (277)
T PRK06928 68 SFICVP----------------PLAVLPLLKDCAPVLTPDRHVVSIAAGVSL 103 (277)
T ss_pred EEEecC----------------HHHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence 998752 133455555555443455566667665433
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0035 Score=63.13 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHh--------HhhhccC--CcccEEEecC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--------LEDSLFP--LLREVKIGIN 165 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~D--------L~d~~~~--~~~~v~i~t~ 165 (337)
++||+||| .|.||..+|..|+..|. .|.. + |+++++++..... +++.... -......++
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G~-----~V~~--~--D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~- 71 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQK-----QVIG--V--DINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT- 71 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCCC-----EEEE--E--eCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec-
Confidence 47999999 59999999999998874 2443 3 4455555532111 1100000 001233332
Q ss_pred cccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC-Cchh
Q 019713 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN-PCNT 227 (337)
Q Consensus 166 ~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN-Pvd~ 227 (337)
+.++||+||++...|.++.. . .+...+.+..+.|.++..++.+||+-|- |..+
T Consensus 72 ---~~~~aDvvii~vptp~~~~~-~-----~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgt 125 (415)
T PRK11064 72 ---TPEPADAFLIAVPTPFKGDH-E-----PDLTYVEAAAKSIAPVLKKGDLVILESTSPVGA 125 (415)
T ss_pred ---ccccCCEEEEEcCCCCCCCC-C-----cChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCH
Confidence 24589999999877643221 1 1234445555666666566666655553 5443
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0041 Score=60.66 Aligned_cols=120 Identities=13% Similarity=0.045 Sum_probs=73.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcc----cEEEecCccccc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR----EVKIGINPYELF 170 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~----~v~i~t~~~eal 170 (337)
..++|+|+||+|+||++++..|+.+|+. |.-... .+.++++. ....+|+... ..+. ++.-...-.+++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~-----V~gtVR-~~~~~k~~-~~L~~l~~a~-~~l~l~~aDL~d~~sf~~ai 76 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYT-----VRGTVR-DPEDEKKT-EHLRKLEGAK-ERLKLFKADLLDEGSFDKAI 76 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCE-----EEEEEc-CcchhhhH-HHHHhcccCc-ccceEEeccccccchHHHHH
Confidence 4579999999999999999999999983 432211 12222222 2344455322 2111 111111234789
Q ss_pred CCCcEEEEecccCCCCCC-chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 171 EDAEWALLIGAKPRGPGM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 171 ~dADvVIitag~prk~g~-~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
++||.|+-+|....-... .-.+++.-.++-.+.+.+.+.+. +.++=+|+|.-
T Consensus 77 ~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~--~sVkrvV~TSS 129 (327)
T KOG1502|consen 77 DGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKT--KSVKRVVYTSS 129 (327)
T ss_pred hCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhcc--CCcceEEEecc
Confidence 999999999864321112 23357788888888899999886 35555566653
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.006 Score=57.86 Aligned_cols=69 Identities=30% Similarity=0.304 Sum_probs=43.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchh-hHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~-~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|||+||| +|.||.+++..|...+.... ..+.+ + +++. ++++..+.+ + .+.+..+..+.+++||+
T Consensus 4 mkI~~IG-~G~mG~aia~~l~~~g~~~~-~~v~v--~--~r~~~~~~~~l~~~-------~--g~~~~~~~~e~~~~aDv 68 (279)
T PRK07679 4 QNISFLG-AGSIAEAIIGGLLHANVVKG-EQITV--S--NRSNETRLQELHQK-------Y--GVKGTHNKKELLTDANI 68 (279)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCCc-ceEEE--E--CCCCHHHHHHHHHh-------c--CceEeCCHHHHHhcCCE
Confidence 5999999 59999999999998874322 12332 2 3332 334332211 1 13344455567889999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
||++.
T Consensus 69 Vilav 73 (279)
T PRK07679 69 LFLAM 73 (279)
T ss_pred EEEEe
Confidence 99875
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0047 Score=61.71 Aligned_cols=75 Identities=23% Similarity=0.268 Sum_probs=46.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--cCcccccCCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDA 173 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t~~~eal~dA 173 (337)
|+||.|||| |.||+.+|..|++.+. + .|.+ .|++.+++..... ..+.... ...+.+. ....+.+++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~---~V~i----AdRs~~~~~~i~~-~~~~~v~-~~~vD~~d~~al~~li~~~ 69 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-G---EVTI----ADRSKEKCARIAE-LIGGKVE-ALQVDAADVDALVALIKDF 69 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-c---eEEE----EeCCHHHHHHHHh-hccccce-eEEecccChHHHHHHHhcC
Confidence 579999996 9999999999998886 2 2655 3566555543322 1110000 0011111 1234788999
Q ss_pred cEEEEecc
Q 019713 174 EWALLIGA 181 (337)
Q Consensus 174 DvVIitag 181 (337)
|+||.++.
T Consensus 70 d~VIn~~p 77 (389)
T COG1748 70 DLVINAAP 77 (389)
T ss_pred CEEEEeCC
Confidence 99999874
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0048 Score=59.98 Aligned_cols=93 Identities=8% Similarity=-0.096 Sum_probs=62.0
Q ss_pred ccEEEecC--cccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHHH-
Q 019713 158 REVKIGIN--PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALICL- 233 (337)
Q Consensus 158 ~~v~i~t~--~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~~- 233 (337)
.+++.+++ .++++++||+||.+. .++.++.+++...|.+++.|++++ +||.... ++.++.
T Consensus 63 ~~i~~~~~~~~~~a~~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~ 126 (314)
T PRK08269 63 ARIAVVARDGAADALADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRH 126 (314)
T ss_pred hCeEeecCcchHHHhccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhh
Confidence 35666654 568899999999985 456788888998899998888754 8887654 333332
Q ss_pred ----------HHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCc
Q 019713 234 ----------KNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFY 267 (337)
Q Consensus 234 ----------k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~ 267 (337)
++. +.|. +++ |.+|.-++......+.+.+|..|
T Consensus 127 ~~~p~r~~g~Hf~-~Pp~~~~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~ 175 (314)
T PRK08269 127 VAHPERFLNAHWL-NPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVP 175 (314)
T ss_pred cCCcccEEEEecC-CccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCcE
Confidence 222 2221 355 45666666555566667788665
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0035 Score=63.39 Aligned_cols=106 Identities=12% Similarity=0.163 Sum_probs=60.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC----------cccEEEec
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL----------LREVKIGI 164 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~----------~~~v~i~t 164 (337)
++|||+||| .|.||..+|..|+.+ + .|.. + |+++++.+... ....+. ......+
T Consensus 5 ~~mkI~vIG-lGyvGlpmA~~la~~--~----~V~g--~--D~~~~~ve~l~----~G~~~~~e~~~~~l~~~g~l~~t- 68 (425)
T PRK15182 5 DEVKIAIIG-LGYVGLPLAVEFGKS--R----QVVG--F--DVNKKRILELK----NGVDVNLETTEEELREARYLKFT- 68 (425)
T ss_pred CCCeEEEEC-cCcchHHHHHHHhcC--C----EEEE--E--eCCHHHHHHHH----CcCCCCCCCCHHHHHhhCCeeEE-
Confidence 458999999 699999999998773 2 2433 3 44555544322 111110 0123444
Q ss_pred CcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 165 ~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.+.+++++||++|++.+.|.+... .. +..-+....+.|.++..++..||+-|
T Consensus 69 ~~~~~~~~advvii~Vptp~~~~~-~~-----dl~~v~~a~~~i~~~l~~g~lVI~~S 120 (425)
T PRK15182 69 SEIEKIKECNFYIITVPTPINTYK-QP-----DLTPLIKASETVGTVLNRGDIVVYES 120 (425)
T ss_pred eCHHHHcCCCEEEEEcCCCCCCCC-Cc-----chHHHHHHHHHHHHhcCCCCEEEEec
Confidence 345689999999999887753211 11 12223333444555444555555544
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0047 Score=59.25 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=58.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE---e--cCcccccC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI---G--INPYELFE 171 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i---~--t~~~eal~ 171 (337)
|||.|+||+|++|++++..|...|. .|.. + .++.+.... +.+.. .++.. . ....++++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~-----~V~~--l--~R~~~~~~~----l~~~~----v~~v~~Dl~d~~~l~~al~ 63 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY-----QVRC--L--VRNLRKASF----LKEWG----AELVYGDLSLPETLPPSFK 63 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----eEEE--E--EcChHHhhh----HhhcC----CEEEECCCCCHHHHHHHHC
Confidence 5899999999999999999998774 2432 1 233222211 11100 01111 1 11246789
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++|+||.+++... ....+....|..-...+.+.+++. +-. .+|.+|
T Consensus 64 g~d~Vi~~~~~~~---~~~~~~~~~~~~~~~~l~~aa~~~-gvk-r~I~~S 109 (317)
T CHL00194 64 GVTAIIDASTSRP---SDLYNAKQIDWDGKLALIEAAKAA-KIK-RFIFFS 109 (317)
T ss_pred CCCEEEECCCCCC---CCccchhhhhHHHHHHHHHHHHHc-CCC-EEEEec
Confidence 9999998764321 111223445666666777777664 323 555555
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0057 Score=58.78 Aligned_cols=69 Identities=23% Similarity=0.263 Sum_probs=42.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.+||+||| +|.+|..++..|...+... .|.+ + |++++.++. +.+. .. ......+..+.++++|+
T Consensus 6 ~~~I~IIG-~G~mG~sla~~l~~~g~~~---~V~~--~--dr~~~~~~~-a~~~-----g~--~~~~~~~~~~~~~~aDv 69 (307)
T PRK07502 6 FDRVALIG-IGLIGSSLARAIRRLGLAG---EIVG--A--DRSAETRAR-AREL-----GL--GDRVTTSAAEAVKGADL 69 (307)
T ss_pred CcEEEEEe-eCHHHHHHHHHHHhcCCCc---EEEE--E--ECCHHHHHH-HHhC-----CC--CceecCCHHHHhcCCCE
Confidence 46999999 5999999999998877521 1333 3 444444332 1111 11 11222344567899999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
||++.
T Consensus 70 Viiav 74 (307)
T PRK07502 70 VILCV 74 (307)
T ss_pred EEECC
Confidence 99986
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0053 Score=59.15 Aligned_cols=79 Identities=13% Similarity=0.095 Sum_probs=49.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.|||+||| +|.+|.+++..|...+. +|.+ ++.+ .. .+..++++++|+
T Consensus 4 ~m~I~iiG-~G~~G~~lA~~l~~~G~-----~V~~--~~r~--~~-----------------------~~~~~~~~~adv 50 (308)
T PRK14619 4 PKTIAILG-AGAWGSTLAGLASANGH-----RVRV--WSRR--SG-----------------------LSLAAVLADADV 50 (308)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCC-----EEEE--EeCC--CC-----------------------CCHHHHHhcCCE
Confidence 46999999 59999999999998875 2544 3332 11 123356678898
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhh-cCCCeEEEEeCC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV-ASRNVKVIVVGN 223 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~-a~p~aivIvvtN 223 (337)
||++.. ...++++.+.+..+ ..++++|+..++
T Consensus 51 vi~~vp----------------~~~~~~v~~~l~~~~~~~~~ivi~~s~ 83 (308)
T PRK14619 51 IVSAVS----------------MKGVRPVAEQVQALNLPPETIIVTATK 83 (308)
T ss_pred EEEECC----------------hHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 888741 12344445555432 245666777666
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0088 Score=60.75 Aligned_cols=112 Identities=11% Similarity=0.093 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC-cccccCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN-PYELFED 172 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~-~~eal~d 172 (337)
+.+||.|+||+|+||++++..|...+. .|.. +|.... .. .....+. .. . .++... .| ....+.+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-----~V~~--ld~~~~-~~-~~~~~~~--~~-~--~~~~~i~~D~~~~~l~~ 183 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-----SVIV--VDNFFT-GR-KENVMHH--FS-N--PNFELIRHDVVEPILLE 183 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-----EEEE--EeCCCc-cc-hhhhhhh--cc-C--CceEEEECCccChhhcC
Confidence 457999999999999999999998764 2432 221110 01 1010100 00 0 112221 12 2245678
Q ss_pred CcEEEEecccCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 173 AEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 173 ADvVIitag~pr--k~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+|+||-+|+... ....+..+.+..|+.....+.+.+++. . +++|+++.
T Consensus 184 ~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~-g--~r~V~~SS 233 (442)
T PLN02206 184 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-G--ARFLLTST 233 (442)
T ss_pred CCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHh-C--CEEEEECC
Confidence 999998886432 111233456788988888888888775 2 46776664
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0067 Score=58.44 Aligned_cols=115 Identities=15% Similarity=0.144 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ec---C---ccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI---N---PYE 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t---~---~~e 168 (337)
++||.|+||+|++|++++..|+..+. .|.+...+.+ ....+. ++.... .. .++.+ .. + ..+
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~-----~V~~~~r~~~-~~~~~~----~~~~~~-~~-~~~~~~~~Dl~d~~~~~~ 76 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGY-----AVNTTVRDPE-NQKKIA----HLRALQ-EL-GDLKIFGADLTDEESFEA 76 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCC-----EEEEEECCCC-CHHHHH----HHHhcC-CC-CceEEEEcCCCChHHHHH
Confidence 46899999999999999999998764 2433222211 111110 111100 00 11221 11 1 134
Q ss_pred ccCCCcEEEEecccCCCCCCc-hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 al~dADvVIitag~prk~g~~-R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.++++|+||.+|+.......+ ..++...|+.-...+.+.+.+. ..-..||++|.
T Consensus 77 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~-~~~~~~v~~SS 131 (338)
T PLN00198 77 PIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKA-KSVKRVILTSS 131 (338)
T ss_pred HHhcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhc-CCccEEEEeec
Confidence 577899999888642211112 2245677888888888888775 22225555553
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.019 Score=55.87 Aligned_cols=116 Identities=14% Similarity=0.066 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc--hhhHHHhHHHhHhhhccCCcccEEEec-C--c---
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER--SLQALEGVAMELEDSLFPLLREVKIGI-N--P--- 166 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~--~~~~l~g~a~DL~d~~~~~~~~v~i~t-~--~--- 166 (337)
+++||.|+||+|++|++++..|...+. .|.. +|... ....+......+.+. . ..++.... | +
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g~-----~V~~--~d~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~Di~d~~~ 83 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLNQ-----TVIG--LDNFSTGYQHNLDDVRTSVSEE--Q-WSRFIFIQGDIRKFTD 83 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCCC-----EEEE--EeCCCCcchhhhhhhhhccccc--c-CCceEEEEccCCCHHH
Confidence 347999999999999999999998764 2432 22110 111111100000000 0 01122111 1 1
Q ss_pred -ccccCCCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 167 -YELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 167 -~eal~dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.+.++++|+||-+|+.+..+ .....+....|+.-...+.+.+++. .-. .+|.+|
T Consensus 84 l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~-~~v~~S 140 (348)
T PRK15181 84 CQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDA-HVS-SFTYAA 140 (348)
T ss_pred HHHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCC-eEEEee
Confidence 23468899999988754322 1233456778888888888888875 222 556555
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0053 Score=53.51 Aligned_cols=91 Identities=19% Similarity=0.172 Sum_probs=58.8
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-------CcccccC
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-------NPYELFE 171 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-------~~~eal~ 171 (337)
|.|+||+|++|..++..|...+. .|... -+++++++. . + ++++.. .-.++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-----~V~~~----~R~~~~~~~--------~-~---~~~~~~~d~~d~~~~~~al~ 59 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-----EVTAL----VRSPSKAED--------S-P---GVEIIQGDLFDPDSVKAALK 59 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-----EEEEE----ESSGGGHHH--------C-T---TEEEEESCTTCHHHHHHHHT
T ss_pred eEEECCCChHHHHHHHHHHHCCC-----EEEEE----ecCchhccc--------c-c---ccccceeeehhhhhhhhhhh
Confidence 78999999999999999999883 24432 234444332 1 1 122111 1246788
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
++|.||.+.|.+.+ .....+.+.+.+++. +.. +++++|.
T Consensus 60 ~~d~vi~~~~~~~~-----------~~~~~~~~~~a~~~~-~~~-~~v~~s~ 98 (183)
T PF13460_consen 60 GADAVIHAAGPPPK-----------DVDAAKNIIEAAKKA-GVK-RVVYLSS 98 (183)
T ss_dssp TSSEEEECCHSTTT-----------HHHHHHHHHHHHHHT-TSS-EEEEEEE
T ss_pred hcchhhhhhhhhcc-----------ccccccccccccccc-ccc-cceeeec
Confidence 99999999875543 156778888888875 333 5566553
|
... |
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.011 Score=56.05 Aligned_cols=115 Identities=16% Similarity=0.060 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-----Ee--cCccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-----IG--INPYE 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-----i~--t~~~e 168 (337)
.+||.|+||+|+||++++..|+..|. .|.....+.+ ...... .+.... ....++. +. ....+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~-----~V~~~~r~~~-~~~~~~----~~~~~~-~~~~~~~~~~~Dl~~~~~~~~ 72 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY-----TVKATVRDPN-DPKKTE----HLLALD-GAKERLHLFKANLLEEGSFDS 72 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC-----EEEEEEcCCC-chhhHH----HHHhcc-CCCCceEEEeccccCcchHHH
Confidence 36899999999999999999998775 2433222211 111111 111100 0001111 11 11235
Q ss_pred ccCCCcEEEEecccCCCC-CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 169 LFEDAEWALLIGAKPRGP-GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 169 al~dADvVIitag~prk~-g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.++++|+||.+++..... .....+.+..|+.-...+.+.+.+..... .||++|
T Consensus 73 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~S 126 (322)
T PLN02662 73 VVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVTS 126 (322)
T ss_pred HHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEcc
Confidence 578999999888643211 11223566778888888888777641112 455554
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0077 Score=54.41 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=59.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHH---hHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~---g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
|||+||||+|.+|+.++.....+|.- ...+ -++..++. ++.. .+. .+---+...++++|-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHe----VTAi-----vRn~~K~~~~~~~~i--~q~------Difd~~~~a~~l~g~ 63 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHE----VTAI-----VRNASKLAARQGVTI--LQK------DIFDLTSLASDLAGH 63 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCe----eEEE-----EeChHhcccccccee--ecc------cccChhhhHhhhcCC
Confidence 69999999999999999999998862 2333 24545542 2211 111 110001224789999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|+||.+-|.+. ++.+ ..-.+-...+...++.. -..+++||+-
T Consensus 64 DaVIsA~~~~~-~~~~-----~~~~k~~~~li~~l~~a--gv~RllVVGG 105 (211)
T COG2910 64 DAVISAFGAGA-SDND-----ELHSKSIEALIEALKGA--GVPRLLVVGG 105 (211)
T ss_pred ceEEEeccCCC-CChh-----HHHHHHHHHHHHHHhhc--CCeeEEEEcC
Confidence 99998765432 2211 11122244555556653 3457888874
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.022 Score=54.58 Aligned_cols=68 Identities=16% Similarity=0.371 Sum_probs=44.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHH-hHHHhHhhhccCCcccEEEecC-cccccCCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGIN-PYELFEDA 173 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~-g~a~DL~d~~~~~~~~v~i~t~-~~eal~dA 173 (337)
++||+|+| .|.||.+++..|...+.. +.+ ++.|.+...++ +..+++.|. .+.+ ..++.++|
T Consensus 3 ~~~v~IvG-~GliG~s~a~~l~~~g~~-----v~i--~g~d~~~~~~~~a~~lgv~d~---------~~~~~~~~~~~~a 65 (279)
T COG0287 3 SMKVGIVG-LGLMGGSLARALKEAGLV-----VRI--IGRDRSAATLKAALELGVIDE---------LTVAGLAEAAAEA 65 (279)
T ss_pred CcEEEEEC-CchHHHHHHHHHHHcCCe-----EEE--EeecCcHHHHHHHhhcCcccc---------cccchhhhhcccC
Confidence 57999999 599999999999998874 433 34454433332 221222221 1122 26788999
Q ss_pred cEEEEec
Q 019713 174 EWALLIG 180 (337)
Q Consensus 174 DvVIita 180 (337)
|+||++.
T Consensus 66 D~Vivav 72 (279)
T COG0287 66 DLVIVAV 72 (279)
T ss_pred CEEEEec
Confidence 9999975
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.017 Score=55.70 Aligned_cols=108 Identities=18% Similarity=0.192 Sum_probs=57.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC-cccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~t~~~eal~dA 173 (337)
+.|||+|||+ |.||..++..|...+. .|.+.. .+. .+........+....... ...+.+.+ +.++...+
T Consensus 4 ~~m~I~IiG~-GaiG~~lA~~L~~~g~-----~V~~~~--r~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 73 (313)
T PRK06249 4 ETPRIGIIGT-GAIGGFYGAMLARAGF-----DVHFLL--RSD-YEAVRENGLQVDSVHGDFHLPPVQAYR-SAEDMPPC 73 (313)
T ss_pred cCcEEEEECC-CHHHHHHHHHHHHCCC-----eEEEEE--eCC-HHHHHhCCeEEEeCCCCeeecCceEEc-chhhcCCC
Confidence 3479999995 9999999999988663 355532 221 111111001111000000 01122322 33467889
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~ 228 (337)
|+||++.-.. . ..+..+.+.....+++.|+...|-.+..
T Consensus 74 D~vilavK~~----~------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~ 112 (313)
T PRK06249 74 DWVLVGLKTT----A------------NALLAPLIPQVAAPDAKVLLLQNGLGVE 112 (313)
T ss_pred CEEEEEecCC----C------------hHhHHHHHhhhcCCCCEEEEecCCCCcH
Confidence 9999985211 1 1233444444445777888888876543
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0091 Score=50.03 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=43.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+|+|++|.||..++..+....- ..|.-. +++..+...| .|+.+...-....+.++.+..+.+..+|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~------~~lv~~-v~~~~~~~~g--~d~g~~~~~~~~~~~v~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPG------FELVGA-VDRKPSAKVG--KDVGELAGIGPLGVPVTDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTT------EEEEEE-EETTTSTTTT--SBCHHHCTSST-SSBEBS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCC------cEEEEE-EecCCccccc--chhhhhhCcCCcccccchhHHHhcccCCEE
Confidence 5999999779999999999988443 222211 3443322222 344433211123455666677888889998
Q ss_pred EEe
Q 019713 177 LLI 179 (337)
Q Consensus 177 Iit 179 (337)
|-.
T Consensus 72 IDf 74 (124)
T PF01113_consen 72 IDF 74 (124)
T ss_dssp EEE
T ss_pred EEc
Confidence 854
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.018 Score=55.14 Aligned_cols=88 Identities=7% Similarity=0.035 Sum_probs=55.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.|||.|+||+|++|++++..|...+. .+... ..+. ...+....|+.+ .+.|+
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~-----~V~~~--~~~~--~~~~~v~~~l~~-------------------~~~D~ 60 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGI-----DFHYG--SGRL--ENRASLEADIDA-------------------VKPTH 60 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCC-----EEEEe--cCcc--CCHHHHHHHHHh-------------------cCCCE
Confidence 47999999999999999999988764 24321 1111 111111111211 15899
Q ss_pred EEEecccCCCCC-----CchhhhHHhhHHHHHHHHHHHHhh
Q 019713 176 ALLIGAKPRGPG-----MERAGLLDINGQIFAEQGKALNAV 211 (337)
Q Consensus 176 VIitag~prk~g-----~~R~dll~~N~~I~~~i~~~I~~~ 211 (337)
||-+|+....+. ....+.+..|......+.+..++.
T Consensus 61 ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~ 101 (298)
T PLN02778 61 VFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRER 101 (298)
T ss_pred EEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 998887543222 123456778888888888888775
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0042 Score=59.22 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=66.5
Q ss_pred EEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhcc--CCcccEEEecCcccccCCCcEEEE
Q 019713 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFEDAEWALL 178 (337)
Q Consensus 101 IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~--~~~~~v~i~t~~~eal~dADvVIi 178 (337)
|+||+|++|++++..|+..+-. ..++.+|.......+. ++.+... ....+++-..+-.++++++|+||-
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~-----~~Vr~~d~~~~~~~~~----~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H 72 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYI-----YEVRVLDRSPPPKFLK----DLQKSGVKEYIQGDITDPESLEEALEGVDVVFH 72 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCc-----eEEEEcccccccccch----hhhcccceeEEEeccccHHHHHHHhcCCceEEE
Confidence 8999999999999999988742 2233444433222211 1111110 001122222234578999999999
Q ss_pred ecccCCCCC-CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 179 IGAKPRGPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 179 tag~prk~g-~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
+|+.-.-.+ ..+..+...|+.=-+.+.+...+. +++-+|+|.-+
T Consensus 73 ~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~---~VkrlVytSS~ 117 (280)
T PF01073_consen 73 TAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKA---GVKRLVYTSSI 117 (280)
T ss_pred eCccccccCcccHHHHHHHHHHHHHHHHHHHHHc---CCCEEEEEcCc
Confidence 886432223 345667888988888888888774 34444444333
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0083 Score=59.03 Aligned_cols=98 Identities=23% Similarity=0.330 Sum_probs=61.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
.++|.|+||+|.||+.++..|+.. +.. .+. + .+++.+++...+.++.+.. + .+..+++.++|
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~----~li--l--v~R~~~rl~~La~el~~~~------i---~~l~~~l~~aD 217 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVA----ELL--L--VARQQERLQELQAELGGGK------I---LSLEEALPEAD 217 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCC----EEE--E--EcCCHHHHHHHHHHhcccc------H---HhHHHHHccCC
Confidence 468999998899999999999753 331 133 3 3455666665554443211 1 12347899999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t 229 (337)
+|+.+++.|...-.+..++ .+..++|=++-|-|+-.
T Consensus 218 iVv~~ts~~~~~~I~~~~l-------------------~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 218 IVVWVASMPKGVEIDPETL-------------------KKPCLMIDGGYPKNLDT 253 (340)
T ss_pred EEEECCcCCcCCcCCHHHh-------------------CCCeEEEEecCCCCCCc
Confidence 9999887764211111111 25578888888877654
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0044 Score=61.07 Aligned_cols=116 Identities=16% Similarity=0.109 Sum_probs=61.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-------Cc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-------NP 166 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-------~~ 166 (337)
.++|||.|+||+|+||++++..|+..+-. .|.. + +++.++.... .+.. ......++++.. ..
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~----~V~~--l--~r~~~~~~~l-~~~~--~~~~~~~~~~~~~Dl~d~~~l 80 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPH----KVLA--L--DVYNDKIKHL-LEPD--TVPWSGRIQFHRINIKHDSRL 80 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCC----EEEE--E--ecCchhhhhh-hccc--cccCCCCeEEEEcCCCChHHH
Confidence 35679999999999999999999886311 2332 2 2222222211 0000 000111222211 11
Q ss_pred ccccCCCcEEEEecccCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 YELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 ~eal~dADvVIitag~prk~g--~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.++++++|+||-+|+...... ....+.+..|+.-...+.+..++. . .++|.+|.
T Consensus 81 ~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~-~--~r~v~~SS 136 (386)
T PLN02427 81 EGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSEN-N--KRLIHFST 136 (386)
T ss_pred HHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhc-C--CEEEEEee
Confidence 356778999999887532111 122344556665555666666554 3 36677664
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.012 Score=57.06 Aligned_cols=115 Identities=10% Similarity=0.119 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-----Eec--Cccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-----IGI--NPYE 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-----i~t--~~~e 168 (337)
.++|.|+||+|+||++++..|+..+. .|.+.. . +.+.+.... ++.... ....++. ++. ...+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~-----~V~~~~--r--~~~~~~~~~-~~~~~~-~~~~~~~~v~~Dl~d~~~~~~ 73 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGY-----TVRATV--R--DPANVKKVK-HLLDLP-GATTRLTLWKADLAVEGSFDD 73 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCC-----EEEEEE--c--CcchhHHHH-HHHhcc-CCCCceEEEEecCCChhhHHH
Confidence 45899999999999999999998764 243321 1 222222111 111100 0000111 111 1235
Q ss_pred ccCCCcEEEEecccCCCCCCc-hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 169 al~dADvVIitag~prk~g~~-R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.++++|+||.+++.......+ ..+.+..|+.-...+.+.+.+. ..-.+||++|
T Consensus 74 ~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~~~~r~v~~S 127 (351)
T PLN02650 74 AIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKA-KTVRRIVFTS 127 (351)
T ss_pred HHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhc-CCceEEEEec
Confidence 577899999887642211111 2345677888888888887775 2223566665
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0073 Score=58.54 Aligned_cols=112 Identities=21% Similarity=0.201 Sum_probs=68.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+|+|| |.||+-++..|...+ . .+.+.. .++..+++...-+.+.+...... .......+.+....+|+|
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g-~----~V~~~~--R~~~~~~l~~~GL~i~~~~~~~~-~~~~~~~~~~~~~~~Dlv 71 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAG-H----DVTLLV--RSRRLEALKKKGLRIEDEGGNFT-TPVVAATDAEALGPADLV 71 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCC-C----eEEEEe--cHHHHHHHHhCCeEEecCCCccc-cccccccChhhcCCCCEE
Confidence 69999995 999999999999988 2 144422 22222333322333333321011 122334556778899999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLK 234 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k 234 (337)
|++. |.. -..+..+.|..+..++++|+..=|=....- .+.+
T Consensus 72 iv~v----Ka~------------q~~~al~~l~~~~~~~t~vl~lqNG~g~~e-~l~~ 112 (307)
T COG1893 72 IVTV----KAY------------QLEEALPSLAPLLGPNTVVLFLQNGLGHEE-ELRK 112 (307)
T ss_pred EEEe----ccc------------cHHHHHHHhhhcCCCCcEEEEEeCCCcHHH-HHHH
Confidence 9985 211 135566667777778888999989876665 3444
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0073 Score=57.49 Aligned_cols=63 Identities=10% Similarity=0.134 Sum_probs=42.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEEE
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVI 177 (337)
||+||| .|.||..++..|+..+. .|.+ + |++.++++.. .+.. ....++..+++++||+||
T Consensus 1 ~IgvIG-~G~mG~~iA~~l~~~G~-----~V~~--~--dr~~~~~~~~----~~~g------~~~~~~~~~~~~~aDivi 60 (291)
T TIGR01505 1 KVGFIG-LGIMGSPMSINLAKAGY-----QLHV--T--TIGPEVADEL----LAAG------AVTAETARQVTEQADVIF 60 (291)
T ss_pred CEEEEE-ecHHHHHHHHHHHHCCC-----eEEE--E--cCCHHHHHHH----HHCC------CcccCCHHHHHhcCCEEE
Confidence 699999 59999999999998774 2543 3 4555554432 2111 112234567899999999
Q ss_pred Eec
Q 019713 178 LIG 180 (337)
Q Consensus 178 ita 180 (337)
++.
T Consensus 61 ~~v 63 (291)
T TIGR01505 61 TMV 63 (291)
T ss_pred Eec
Confidence 875
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.015 Score=54.79 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=40.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+|||+ |.||.+++..|...+.+.+. .+.+ .+++.+++ .+....++.+.++++|+|
T Consensus 4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~~-~i~~----~~~~~~~~----------------~~~~~~~~~~~~~~~D~V 61 (260)
T PTZ00431 4 IRVGFIGL-GKMGSALAYGIENSNIIGKE-NIYY----HTPSKKNT----------------PFVYLQSNEELAKTCDII 61 (260)
T ss_pred CEEEEECc-cHHHHHHHHHHHhCCCCCcc-eEEE----ECCChhcC----------------CeEEeCChHHHHHhCCEE
Confidence 68999995 99999999999988765421 2433 23332221 112233455677899999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
|++.
T Consensus 62 ilav 65 (260)
T PTZ00431 62 VLAV 65 (260)
T ss_pred EEEe
Confidence 8874
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.013 Score=60.11 Aligned_cols=100 Identities=19% Similarity=0.231 Sum_probs=60.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC---C
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---D 172 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~---d 172 (337)
|.+|+||| .|.||..+|..|+..+. .|.+ + |++.++.+......... ...+....+..+.++ +
T Consensus 1 ~~~IgvIG-LG~MG~~lA~nL~~~G~-----~V~v--~--dr~~~~~~~l~~~~~~~----g~~i~~~~s~~e~v~~l~~ 66 (470)
T PTZ00142 1 MSDIGLIG-LAVMGQNLALNIASRGF-----KISV--Y--NRTYEKTEEFVKKAKEG----NTRVKGYHTLEELVNSLKK 66 (470)
T ss_pred CCEEEEEe-EhHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHHHHHhhhhc----CCcceecCCHHHHHhcCCC
Confidence 45899999 59999999999999886 2554 3 45556655432211110 112333334334443 5
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
+|+|+++.-. .+.++++.+.+..+..++.+||..+|-
T Consensus 67 ~d~Iil~v~~---------------~~~v~~vi~~l~~~L~~g~iIID~gn~ 103 (470)
T PTZ00142 67 PRKVILLIKA---------------GEAVDETIDNLLPLLEKGDIIIDGGNE 103 (470)
T ss_pred CCEEEEEeCC---------------hHHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 8988776411 234455555555554677788888874
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.012 Score=56.73 Aligned_cols=112 Identities=10% Similarity=0.064 Sum_probs=64.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-----Eec--Cccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-----IGI--NPYE 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-----i~t--~~~e 168 (337)
.++|.|+||+|.+|++++..|+..+-.. .|.+ ++ ++.........++.. .++. ++. ...+
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~---~V~~--~~--r~~~~~~~~~~~~~~------~~~~~v~~Dl~d~~~l~~ 70 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPK---KIII--YS--RDELKQWEMQQKFPA------PCLRFFIGDVRDKERLTR 70 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCc---EEEE--Ec--CChhHHHHHHHHhCC------CcEEEEEccCCCHHHHHH
Confidence 4689999999999999999998764111 1332 22 222222211111111 1111 111 1234
Q ss_pred ccCCCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 169 LFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 169 al~dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++++.|+||.++|....+ ..+..+.+..|+.-...+.+.+.+. ... .||++|
T Consensus 71 ~~~~iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~-~~~-~iV~~S 124 (324)
T TIGR03589 71 ALRGVDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDN-GVK-RVVALS 124 (324)
T ss_pred HHhcCCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEEe
Confidence 567899999988753222 1233457788888888888887774 333 566665
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.024 Score=53.67 Aligned_cols=107 Identities=18% Similarity=0.169 Sum_probs=59.3
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHH-HhHHHhHhhhccCCcccEEEecC-ccc-----ccC
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQAL-EGVAMELEDSLFPLLREVKIGIN-PYE-----LFE 171 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l-~g~a~DL~d~~~~~~~~v~i~t~-~~e-----al~ 171 (337)
|.|+||+|+||++++..|+..|.- .+.+ ++........ .-...|+.|.. . . .+ ..+ .+.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~----~v~~--~~~~~~~~~~~~~~~~~~~d~~-~----~---~~~~~~~~~~~~~~ 67 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGIT----DILV--VDNLKDGTKFVNLVDLDIADYM-D----K---EDFLAQIMAGDDFG 67 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCc----eEEE--ecCCCcchHHHhhhhhhhhhhh-h----H---HHHHHHHhcccccC
Confidence 789999999999999999987641 1322 2221111110 00112222211 0 0 00 011 234
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++|+||-+|+.+.............|......+.+.+.+. ++++|.+|
T Consensus 68 ~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~---~~~~i~~S 115 (308)
T PRK11150 68 DIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER---EIPFLYAS 115 (308)
T ss_pred CccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHc---CCcEEEEc
Confidence 7999999887543222333446777888778888887775 23566665
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.027 Score=55.14 Aligned_cols=72 Identities=28% Similarity=0.338 Sum_probs=42.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
++||+|+||+|.+|..++..|...+.- .+.|..+..+.. .|..+++.. ..+.+...+..+++++|+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp----~~~l~~l~s~~~----~g~~l~~~g------~~i~v~d~~~~~~~~vDv 66 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFP----VDKLRLLASARS----AGKELSFKG------KELKVEDLTTFDFSGVDI 66 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCC----cceEEEEEcccc----CCCeeeeCC------ceeEEeeCCHHHHcCCCE
Confidence 479999999999999999999875431 123333322221 122222211 233443223346789999
Q ss_pred EEEecc
Q 019713 176 ALLIGA 181 (337)
Q Consensus 176 VIitag 181 (337)
||++.|
T Consensus 67 Vf~A~g 72 (334)
T PRK14874 67 ALFSAG 72 (334)
T ss_pred EEECCC
Confidence 998764
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.02 Score=55.72 Aligned_cols=109 Identities=12% Similarity=0.081 Sum_probs=63.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHh-HHHhHhhhccCCcccEEEe-c------Ccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG-VAMELEDSLFPLLREVKIG-I------NPY 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g-~a~DL~d~~~~~~~~v~i~-t------~~~ 167 (337)
+++|.|+||+|++|++++..|+..+. .|.... ++.+.... ...++... ..++.+. . +..
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~-----~V~~~~----r~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~d~~~~~ 76 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGY-----TVKGTV----RNPDDPKNTHLRELEGG----KERLILCKADLQDYEALK 76 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-----EEEEEe----CCchhhhHHHHHHhhCC----CCcEEEEecCcCChHHHH
Confidence 46899999999999999999998775 243321 22121111 11111110 0112211 1 123
Q ss_pred cccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 168 eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++++++|+||.+++... ....+.+..|+.-...+.+.+.+. ... .||++|
T Consensus 77 ~~~~~~d~Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~-~v~-r~V~~S 126 (342)
T PLN02214 77 AAIDGCDGVFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEA-KVK-RVVITS 126 (342)
T ss_pred HHHhcCCEEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhc-CCC-EEEEec
Confidence 56789999999887432 123456777888788888887775 323 455554
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.02 Score=53.53 Aligned_cols=69 Identities=20% Similarity=0.291 Sum_probs=43.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+||| +|.||.+++..|...+.-- ..+.+ .+++.++++..+..+ + .+.+..+..+.++++|+|
T Consensus 1 m~IgiIG-~G~mG~aia~~L~~~g~~~--~~i~v----~~r~~~~~~~l~~~~-----~---~~~~~~~~~~~~~~aDvV 65 (258)
T PRK06476 1 MKIGFIG-TGAITEAMVTGLLTSPADV--SEIIV----SPRNAQIAARLAERF-----P---KVRIAKDNQAVVDRSDVV 65 (258)
T ss_pred CeEEEEC-cCHHHHHHHHHHHhCCCCh--heEEE----ECCCHHHHHHHHHHc-----C---CceEeCCHHHHHHhCCEE
Confidence 4899999 5999999999998876421 11322 245555554322111 1 133444555667899999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
+++.
T Consensus 66 ilav 69 (258)
T PRK06476 66 FLAV 69 (258)
T ss_pred EEEe
Confidence 9875
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.015 Score=55.34 Aligned_cols=65 Identities=11% Similarity=0.199 Sum_probs=42.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
++||+||| .|.+|..++..|+..+. .|.+ + |++.++.+.. ... .+....+..+.++++|+
T Consensus 2 ~~~IgviG-~G~mG~~~a~~l~~~g~-----~v~~--~--d~~~~~~~~~----~~~------g~~~~~~~~e~~~~~d~ 61 (296)
T PRK11559 2 TMKVGFIG-LGIMGKPMSKNLLKAGY-----SLVV--Y--DRNPEAVAEV----IAA------GAETASTAKAVAEQCDV 61 (296)
T ss_pred CceEEEEc-cCHHHHHHHHHHHHCCC-----eEEE--E--cCCHHHHHHH----HHC------CCeecCCHHHHHhcCCE
Confidence 36899999 59999999999988664 2433 3 4454444321 111 12233344567899999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
||++.
T Consensus 62 vi~~v 66 (296)
T PRK11559 62 IITML 66 (296)
T ss_pred EEEeC
Confidence 99875
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.008 Score=58.20 Aligned_cols=107 Identities=10% Similarity=0.099 Sum_probs=59.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC---c----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN---P---- 166 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~---~---- 166 (337)
||||.|+||+|++|++++..|... +. .|.. + ++..+... ++... + .+.+. .| +
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~-----~V~~--~--~r~~~~~~----~~~~~--~---~~~~~~~Dl~~~~~~~ 62 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW-----EVYG--M--DMQTDRLG----DLVNH--P---RMHFFEGDITINKEWI 62 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC-----eEEE--E--eCcHHHHH----HhccC--C---CeEEEeCCCCCCHHHH
Confidence 468999999999999999999864 32 1332 2 22222211 11110 0 11111 11 1
Q ss_pred ccccCCCcEEEEecccC--CCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 YELFEDAEWALLIGAKP--RGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 ~eal~dADvVIitag~p--rk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.++++|+||-+++.. .....+-......|+.-...+.+.+.+. . .++|.+|.
T Consensus 63 ~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~-~--~~~v~~SS 118 (347)
T PRK11908 63 EYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G--KHLVFPST 118 (347)
T ss_pred HHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhc-C--CeEEEEec
Confidence 13567999999877642 2112222334556666667777777764 2 46666653
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.02 Score=56.34 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=44.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d 172 (337)
|++|+||+|+||+|.+|..++..|...+.- .+.|..+..... .|.-+.+.. ....+...+.+++++
T Consensus 1 m~~~~~IaIvGATG~vG~eLlrlL~~~~hP----~~~l~~v~s~~~----aG~~l~~~~------~~l~~~~~~~~~~~~ 66 (336)
T PRK05671 1 MSQPLDIAVVGATGTVGEALVQILEERDFP----VGTLHLLASSES----AGHSVPFAG------KNLRVREVDSFDFSQ 66 (336)
T ss_pred CCCCCEEEEEccCCHHHHHHHHHHhhCCCC----ceEEEEEECccc----CCCeeccCC------cceEEeeCChHHhcC
Confidence 356689999999999999999999865431 134444322211 122222221 123333223345789
Q ss_pred CcEEEEecc
Q 019713 173 AEWALLIGA 181 (337)
Q Consensus 173 ADvVIitag 181 (337)
+|+|+++.+
T Consensus 67 vD~vFla~p 75 (336)
T PRK05671 67 VQLAFFAAG 75 (336)
T ss_pred CCEEEEcCC
Confidence 999998753
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.017 Score=55.37 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=50.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..||.|+|| |.+|.++++.|+..++- .|.+ .+++.+++++.+.++.+.. +. ..+....+..+.++++|+
T Consensus 127 ~k~vlIlGa-GGaaraia~aL~~~G~~----~I~I----~nR~~~ka~~la~~l~~~~-~~-~~~~~~~~~~~~~~~aDi 195 (284)
T PRK12549 127 LERVVQLGA-GGAGAAVAHALLTLGVE----RLTI----FDVDPARAAALADELNARF-PA-ARATAGSDLAAALAAADG 195 (284)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCCC----EEEE----ECCCHHHHHHHHHHHHhhC-CC-eEEEeccchHhhhCCCCE
Confidence 468999995 99999999999987752 2544 3567788888877776532 21 122211223457889999
Q ss_pred EEEe
Q 019713 176 ALLI 179 (337)
Q Consensus 176 VIit 179 (337)
||.+
T Consensus 196 VIna 199 (284)
T PRK12549 196 LVHA 199 (284)
T ss_pred EEEC
Confidence 9987
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.013 Score=56.29 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=43.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|+||+||| .|.||..++..|+..+. .|.+ + |++.++++.. .+. ......+..++++++|+
T Consensus 1 m~~Ig~IG-lG~mG~~mA~~l~~~G~-----~V~v--~--d~~~~~~~~~----~~~------g~~~~~s~~~~~~~aDv 60 (296)
T PRK15461 1 MAAIAFIG-LGQMGSPMASNLLKQGH-----QLQV--F--DVNPQAVDAL----VDK------GATPAASPAQAAAGAEF 60 (296)
T ss_pred CCeEEEEe-eCHHHHHHHHHHHHCCC-----eEEE--E--cCCHHHHHHH----HHc------CCcccCCHHHHHhcCCE
Confidence 35899999 59999999999998774 2443 3 4455554432 211 11223345678899999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
||++.
T Consensus 61 Vi~~v 65 (296)
T PRK15461 61 VITML 65 (296)
T ss_pred EEEec
Confidence 99874
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.034 Score=53.23 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=61.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc-chhhHHHhHHHhHhhhccCCcccEEEecC--cccccC--
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-RSLQALEGVAMELEDSLFPLLREVKIGIN--PYELFE-- 171 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d-~~~~~l~g~a~DL~d~~~~~~~~v~i~t~--~~eal~-- 171 (337)
|||.|+||+|++|++++..|+..+. .|.+ ++.. ...........++.+.. .......++.. ..++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Dl~d~~~~~~~~~~~ 72 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH-----DVVI--LDNLCNSKRSVLPVIERLGGKH-PTFVEGDIRNEALLTEILHDH 72 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC-----eEEE--EecCCCchHhHHHHHHHhcCCC-ceEEEccCCCHHHHHHHHhcC
Confidence 5899999999999999999988764 2443 2211 11111101111111100 00000111110 112233
Q ss_pred CCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 172 DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 172 dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++|+||.+++..... .....+.+..|+.....+.+.+++. .-. .+|.+|
T Consensus 73 ~~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~-~~v~~S 123 (338)
T PRK10675 73 AIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVK-NLIFSS 123 (338)
T ss_pred CCCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEec
Confidence 589999887654211 1223466788888888888888875 222 455555
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.017 Score=57.04 Aligned_cols=68 Identities=16% Similarity=0.295 Sum_probs=41.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
.||+||| +|.||.+++..|...+. .+.+ ++.+.+...+. .+. . . .... ...++..+++++||+|
T Consensus 1 ~~I~iIG-~GliG~siA~~L~~~G~-----~v~i--~~~~~~~~~~~-~a~--~--~-~~~~--~~~~~~~~~~~~aDlV 64 (359)
T PRK06545 1 RTVLIVG-LGLIGGSLALAIKAAGP-----DVFI--IGYDPSAAQLA-RAL--G--F-GVID--ELAADLQRAAAEADLI 64 (359)
T ss_pred CeEEEEE-eCHHHHHHHHHHHhcCC-----CeEE--EEeCCCHHHHH-HHh--c--C-CCCc--ccccCHHHHhcCCCEE
Confidence 4799999 59999999999988775 2444 33443322221 111 0 0 1101 1223445678999999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
|++.
T Consensus 65 ilav 68 (359)
T PRK06545 65 VLAV 68 (359)
T ss_pred EEeC
Confidence 9985
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.02 Score=55.03 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=55.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+||| .|.+|..++..|+..+. .|.+ + |++.++++... +.... ......+..+.++++|+|
T Consensus 1 M~Ig~IG-lG~mG~~la~~L~~~g~-----~V~~--~--dr~~~~~~~l~----~~g~~---~~~s~~~~~~~~~~~dvI 63 (298)
T TIGR00872 1 MQLGLIG-LGRMGANIVRRLAKRGH-----DCVG--Y--DHDQDAVKAMK----EDRTT---GVANLRELSQRLSAPRVV 63 (298)
T ss_pred CEEEEEc-chHHHHHHHHHHHHCCC-----EEEE--E--ECCHHHHHHHH----HcCCc---ccCCHHHHHhhcCCCCEE
Confidence 4899999 59999999999998774 2443 3 45555554332 11100 000001112356789999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
+++... ..++++.+.+.....++.+||..+|..
T Consensus 64 i~~vp~----------------~~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 64 WVMVPH----------------GIVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred EEEcCc----------------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 987411 133444445555445677888888753
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.02 Score=55.39 Aligned_cols=105 Identities=21% Similarity=0.211 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
..+||+|||+ |.||..++..|...+.. .|.+ .+++.++++..+.++. ..+....+..+.+.++|
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~----~V~v----~~r~~~ra~~la~~~g-------~~~~~~~~~~~~l~~aD 240 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVA----EITI----ANRTYERAEELAKELG-------GNAVPLDELLELLNEAD 240 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHcC-------CeEEeHHHHHHHHhcCC
Confidence 4579999995 99999999998875531 2444 2556566554444332 11222223457788999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~ 230 (337)
+||.+.+.|.. ..++++..+ ....++.++|-+++|-|+-..
T Consensus 241 vVi~at~~~~~------------~~~~~~~~~---~~~~~~~~viDlavPrdi~~~ 281 (311)
T cd05213 241 VVISATGAPHY------------AKIVERAMK---KRSGKPRLIVDLAVPRDIEPE 281 (311)
T ss_pred EEEECCCCCch------------HHHHHHHHh---hCCCCCeEEEEeCCCCCCchh
Confidence 99998765531 122222222 211245688999999886443
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.025 Score=56.23 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=43.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-CcccccCCCcE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~~~eal~dADv 175 (337)
+||+|+||+|.||+.+...|....-|.- ..+.++... +..|...... .....+.. ++.+++++.|+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~---~~~~~~ss~----~s~g~~~~f~------~~~~~v~~~~~~~~~~~vDi 67 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDA---IRPVFFSTS----QLGQAAPSFG------GTTGTLQDAFDIDALKALDI 67 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCcc---ccEEEEEch----hhCCCcCCCC------CCcceEEcCcccccccCCCE
Confidence 4899999999999999998884554431 345444432 2222222111 11223322 23358999999
Q ss_pred EEEecc
Q 019713 176 ALLIGA 181 (337)
Q Consensus 176 VIitag 181 (337)
|++++|
T Consensus 68 vffa~g 73 (366)
T TIGR01745 68 IITCQG 73 (366)
T ss_pred EEEcCC
Confidence 999875
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.064 Score=51.08 Aligned_cols=115 Identities=20% Similarity=0.099 Sum_probs=73.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-C-------
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N------- 165 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~------- 165 (337)
.++.++.|+||++.||..+|..|+..|. .+.| +.+++++|+..+-||++.. . .++.+.. |
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-----~liL----vaR~~~kL~~la~~l~~~~-~--v~v~vi~~DLs~~~~~ 71 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-----NLIL----VARREDKLEALAKELEDKT-G--VEVEVIPADLSDPEAL 71 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCcHHHHHHHHHHHHHhh-C--ceEEEEECcCCChhHH
Confidence 3456899999999999999999999886 2444 4788999999999999754 1 1222211 1
Q ss_pred ------cccccCCCcEEEEecccCCC------CCCchhhhHHhhHHHH----HHHHHHHHhhcCCCeEEEEeC
Q 019713 166 ------PYELFEDAEWALLIGAKPRG------PGMERAGLLDINGQIF----AEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 166 ------~~eal~dADvVIitag~prk------~g~~R~dll~~N~~I~----~~i~~~I~~~a~p~aivIvvt 222 (337)
..+...+.|+.|..||.-.- +..+-.+++.-|+--. +.+.+.+.+- .. +-||+++
T Consensus 72 ~~l~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~-~~-G~IiNI~ 142 (265)
T COG0300 72 ERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVER-GA-GHIINIG 142 (265)
T ss_pred HHHHHHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ceEEEEe
Confidence 11122358999998875421 1223345667675443 4445556653 33 4556665
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.016 Score=57.13 Aligned_cols=75 Identities=25% Similarity=0.382 Sum_probs=46.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
.+.+||+||||+|.+|..+...|....-|.- -.|.++..+++ .|....+.. ..+.+..-+.++++++
T Consensus 3 ~~~~~VaIvGATG~vG~ell~lL~~h~~f~v---~~l~~~aS~~s----aGk~~~~~~------~~l~v~~~~~~~~~~~ 69 (347)
T PRK06728 3 EKGYHVAVVGATGAVGQKIIELLEKETKFNI---AEVTLLSSKRS----AGKTVQFKG------REIIIQEAKINSFEGV 69 (347)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHCCCCCc---ccEEEEECccc----CCCCeeeCC------cceEEEeCCHHHhcCC
Confidence 3457999999999999999999986555531 12444444322 222222211 1344443345678999
Q ss_pred cEEEEecc
Q 019713 174 EWALLIGA 181 (337)
Q Consensus 174 DvVIitag 181 (337)
|+|+++.+
T Consensus 70 Divf~a~~ 77 (347)
T PRK06728 70 DIAFFSAG 77 (347)
T ss_pred CEEEECCC
Confidence 99999763
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.06 Score=52.77 Aligned_cols=130 Identities=14% Similarity=0.182 Sum_probs=80.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcC----CCCCCCceEEEeccccchhh--HHHhHHHhHhhhcc------CCcccEE
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGE----VLGPDQPIALKLLGSERSLQ--ALEGVAMELEDSLF------PLLREVK 161 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~----l~~e~~~v~L~L~d~d~~~~--~l~g~a~DL~d~~~------~~~~~v~ 161 (337)
..+.||+||| +|+=|+++|..+...- .| +..|.+..++.+.+.+ +|.- ...-.|-.. .+..++.
T Consensus 19 ~~~~kV~ivG-sGnWGsaiaki~~~n~~~~~~f--~~~Vrmwv~ee~i~~~~~~L~e-iIN~~heN~KYlpg~~lP~Nvv 94 (372)
T KOG2711|consen 19 RDPLKVCIVG-SGNWGSAIAKIVGENVKEFPIF--DPQVRMWVFEEEINGEAEKLTE-IINSRHENVKYLPGIKLPENVV 94 (372)
T ss_pred cCceEEEEEc-cChHHHHHHHHHhhhhhhcccc--CceeeEEEeccccCChhHHHHH-HhccccccccccCCccCCCCeE
Confidence 3467999999 5999999998776322 33 2347776655444332 2221 111111110 1234677
Q ss_pred EecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC--------CC-chhHHHHH
Q 019713 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG--------NP-CNTNALIC 232 (337)
Q Consensus 162 i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt--------NP-vd~~t~i~ 232 (337)
..+|..++++|||++|+.. | -+.+.++++.|..+-.|++..|-.+ -| +.+++.++
T Consensus 95 Av~dl~ea~~dADilvf~v--P--------------hQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI 158 (372)
T KOG2711|consen 95 AVPDLVEAAKDADILVFVV--P--------------HQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQII 158 (372)
T ss_pred ecchHHHHhccCCEEEEeC--C--------------hhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHH
Confidence 7788889999999999964 3 2556667777777767776654443 23 46677777
Q ss_pred HHHCCCCCCCeE
Q 019713 233 LKNAPSIPAKNF 244 (337)
Q Consensus 233 ~k~s~~~p~kvI 244 (337)
.+.. ++|..++
T Consensus 159 ~~~l-gI~~~vL 169 (372)
T KOG2711|consen 159 HRAL-GIPCSVL 169 (372)
T ss_pred HHHh-CCCceee
Confidence 7766 5765544
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.029 Score=53.36 Aligned_cols=114 Identities=11% Similarity=0.027 Sum_probs=61.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-----Eec--Ccccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-----IGI--NPYEL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-----i~t--~~~ea 169 (337)
++|.|+||+|.+|++++..|+..|. .|.+. ..+...........++.. . ..++. ++. .-.++
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~-----~V~~~--~R~~~~~~~~~~~~~l~~-~---~~~~~~~~~Dl~d~~~~~~~ 75 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGY-----TVHAA--VQKNGETEIEKEIRGLSC-E---EERLKVFDVDPLDYHSILDA 75 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-----EEEEE--EcCchhhhHHHHHHhccc-C---CCceEEEEecCCCHHHHHHH
Confidence 5799999999999999999998775 24432 111111122111111210 0 01111 111 12367
Q ss_pred cCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 170 l~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++++|.|+..++.+........+++..|+.-...+.+.+.+.... ..||++|
T Consensus 76 l~~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v-~riV~~S 127 (297)
T PLN02583 76 LKGCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTI-EKVVFTS 127 (297)
T ss_pred HcCCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCc-cEEEEec
Confidence 889999886554332111112356778888778888877764212 2555554
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.07 Score=51.43 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=60.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHH----hHhhhccCCcccEEEecCcccccC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM----ELEDSLFPLLREVKIGINPYELFE 171 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~----DL~d~~~~~~~~v~i~t~~~eal~ 171 (337)
.|||+|+|| |.||..++..|...|. .|.+. ++..+.++.... -+.+.... ..+.+...+.+...
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~-----~V~lv----~r~~~~~~~i~~~~Gl~i~~~g~~--~~~~~~~~~~~~~~ 69 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGL-----PVRLI----LRDRQRLAAYQQAGGLTLVEQGQA--SLYAIPAETADAAE 69 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCC-----CeEEE----EechHHHHHHhhcCCeEEeeCCcc--eeeccCCCCccccc
Confidence 469999995 9999999999988764 36653 333233332111 01110000 01111112223456
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHH
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i 231 (337)
..|+||++.- . .+ ..+..+.|..+..+++.|+.+-|=++....+
T Consensus 70 ~~D~viv~vK----~-----------~~-~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l 113 (305)
T PRK05708 70 PIHRLLLACK----A-----------YD-AEPAVASLAHRLAPGAELLLLQNGLGSQDAV 113 (305)
T ss_pred ccCEEEEECC----H-----------Hh-HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHH
Confidence 8899998851 1 11 2334445555556788889999988765544
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.025 Score=48.12 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=66.4
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHH---HhHhhhccCCcccEE--EecCcc-cccCC
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA---MELEDSLFPLLREVK--IGINPY-ELFED 172 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a---~DL~d~~~~~~~~v~--i~t~~~-eal~d 172 (337)
|+|+|| |.||..+|..|...+. .|.+. .+.. .++... ..+.+.. -...+. ...... +....
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~-----~V~l~----~r~~-~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 67 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGH-----DVTLV----SRSP-RLEAIKEQGLTITGPD--GDETVQPPIVISAPSADAGP 67 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTC-----EEEEE----ESHH-HHHHHHHHCEEEEETT--EEEEEEEEEEESSHGHHHST
T ss_pred CEEECc-CHHHHHHHHHHHHCCC-----ceEEE----Eccc-cHHhhhheeEEEEecc--cceecccccccCcchhccCC
Confidence 789995 9999999999988664 35553 2332 232211 1111110 001111 111222 46789
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEEecCc
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR 249 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~ 249 (337)
.|+||++.-. .-.++..+.|+.+..+++.|+.+-|=++..-.+. +..+ +++++++.|.
T Consensus 68 ~D~viv~vKa----------------~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~-~~~~--~~~v~~g~~~ 125 (151)
T PF02558_consen 68 YDLVIVAVKA----------------YQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLA-EYFP--RPRVLGGVTT 125 (151)
T ss_dssp ESEEEE-SSG----------------GGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHH-CHST--GSGEEEEEEE
T ss_pred CcEEEEEecc----------------cchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHH-HHcC--CCcEEEEEEe
Confidence 9999998521 1124466667777778889999999877664443 3221 2366655444
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.067 Score=51.93 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=24.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
...+||.|+||+|+||++++..|+..|.
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~ 35 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGY 35 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 4457999999999999999999998764
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0045 Score=59.66 Aligned_cols=121 Identities=21% Similarity=0.214 Sum_probs=65.6
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhcc--CC-------cccEEEecCcccc
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PL-------LREVKIGINPYEL 169 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~--~~-------~~~v~i~t~~~ea 169 (337)
|.|+||+|.+|+.++..|+..+. -.|+++ |+++..+.....++..... .+ ..+++-.......
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p------~~lil~--d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~ 72 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP------KKLILF--DRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRI 72 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-------SEEEEE--ES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCC------CeEEEe--CCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHH
Confidence 67999999999999999988654 234454 4556666666666642210 11 1111100011355
Q ss_pred cC--CCcEEEEecccCCCCCCc--hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-----CCchhHH
Q 019713 170 FE--DAEWALLIGAKPRGPGME--RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-----NPCNTNA 229 (337)
Q Consensus 170 l~--dADvVIitag~prk~g~~--R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt-----NPvd~~t 229 (337)
++ +.|+|+-+|+.-.-|=++ -.+.+..|+-=-+.+++...++ .-+ .+|.+| ||.++|.
T Consensus 73 ~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~-~v~-~~v~ISTDKAv~PtnvmG 139 (293)
T PF02719_consen 73 FEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEH-GVE-RFVFISTDKAVNPTNVMG 139 (293)
T ss_dssp TT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHT-T-S-EEEEEEECGCSS--SHHH
T ss_pred HhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEccccccCCCCcHHH
Confidence 67 999999998753322222 2355777776677777777776 444 444444 8888764
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.062 Score=48.90 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||+|+|+ |.+|+.++..|+..|+
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gv 45 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGI 45 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999987
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.022 Score=55.22 Aligned_cols=113 Identities=12% Similarity=0.029 Sum_probs=61.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC--cc----c
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----E 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~--~~----e 168 (337)
.++|.|+||+|++|++++..|+..+. .|.. ++ ++..........+.. . .++. +..| +. +
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~-----~V~~--~~--r~~~~~~~~~~~~~~-~----~~~~~~~~Dl~~~~~~~~ 69 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGA-----EVYG--YS--LDPPTSPNLFELLNL-A----KKIEDHFGDIRDAAKLRK 69 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCC-----EEEE--Ee--CCCccchhHHHHHhh-c----CCceEEEccCCCHHHHHH
Confidence 36899999999999999999998764 2433 22 222211111001110 0 0111 1111 11 2
Q ss_pred ccC--CCcEEEEecccCCC--CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 LFE--DAEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 al~--dADvVIitag~prk--~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.++ +.|+||.+++.+.. ...+-...+..|+.-...+.+.+.+. +....+|++|.
T Consensus 70 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~-~~~~~iv~~SS 127 (349)
T TIGR02622 70 AIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAI-GSVKAVVNVTS 127 (349)
T ss_pred HHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhc-CCCCEEEEEec
Confidence 333 35999998875421 11122345677887778888877664 32235666664
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.026 Score=55.44 Aligned_cols=73 Identities=26% Similarity=0.272 Sum_probs=44.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+.+||+||||+|.+|..+...|.....- ...|..+..+.+ .|.-..+. . ..+.+...+..++.++|
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP----~~~l~~laS~~s----aG~~~~~~----~--~~~~v~~~~~~~~~~~D 68 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFP----VGELYALASEES----AGETLRFG----G--KSVTVQDAAEFDWSQAQ 68 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCC----ceEEEEEEccCc----CCceEEEC----C--cceEEEeCchhhccCCC
Confidence 4579999999999999999988874331 134544444322 22212121 1 13444322345568999
Q ss_pred EEEEecc
Q 019713 175 WALLIGA 181 (337)
Q Consensus 175 vVIitag 181 (337)
+|+++.+
T Consensus 69 vvf~a~p 75 (336)
T PRK08040 69 LAFFVAG 75 (336)
T ss_pred EEEECCC
Confidence 9999753
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.034 Score=55.32 Aligned_cols=73 Identities=12% Similarity=0.205 Sum_probs=41.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCcccccCCCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~~eal~dAD 174 (337)
|+||+|+||+|.+|..+...|+...-+.- ..+.++... ...+...++.. ....+. ..+.++++++|
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~---~~l~~~ss~----~sg~~~~~f~g------~~~~v~~~~~~~~~~~~D 67 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDL---IEPVFFSTS----QAGGAAPSFGG------KEGTLQDAFDIDALKKLD 67 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCc---CcEEEecch----hhCCcccccCC------CcceEEecCChhHhcCCC
Confidence 47999999999999999985555554431 123333322 11122112221 111222 22346789999
Q ss_pred EEEEecc
Q 019713 175 WALLIGA 181 (337)
Q Consensus 175 vVIitag 181 (337)
+|+++++
T Consensus 68 ivf~a~~ 74 (369)
T PRK06598 68 IIITCQG 74 (369)
T ss_pred EEEECCC
Confidence 9999764
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.015 Score=49.30 Aligned_cols=76 Identities=22% Similarity=0.125 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+..+|.|+|| |.+|..+++.|...+.- .|.+ .+++.++++..+..+... ...+....+..+.+.++|
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~----~i~i----~nRt~~ra~~l~~~~~~~----~~~~~~~~~~~~~~~~~D 77 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGAK----EITI----VNRTPERAEALAEEFGGV----NIEAIPLEDLEEALQEAD 77 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTSS----EEEE----EESSHHHHHHHHHHHTGC----SEEEEEGGGHCHHHHTES
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCCC----EEEE----EECCHHHHHHHHHHcCcc----ccceeeHHHHHHHHhhCC
Confidence 4579999995 99999999999998762 2554 367777777665555111 111222234456788999
Q ss_pred EEEEecccC
Q 019713 175 WALLIGAKP 183 (337)
Q Consensus 175 vVIitag~p 183 (337)
+||.+-+.+
T Consensus 78 ivI~aT~~~ 86 (135)
T PF01488_consen 78 IVINATPSG 86 (135)
T ss_dssp EEEE-SSTT
T ss_pred eEEEecCCC
Confidence 999876543
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.018 Score=55.36 Aligned_cols=65 Identities=15% Similarity=0.259 Sum_probs=43.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
+||++|| .|.||+.+|..|...|+ .+.. + |++.++.... +.... ........++.++||+|
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG~-----~v~v--~--~r~~~ka~~~---~~~~G------a~~a~s~~eaa~~aDvV 61 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAGH-----EVTV--Y--NRTPEKAAEL---LAAAG------ATVAASPAEAAAEADVV 61 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCCC-----EEEE--E--eCChhhhhHH---HHHcC------CcccCCHHHHHHhCCEE
Confidence 5899999 69999999999999886 2443 2 4454553211 22211 12224457899999999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
|.+.
T Consensus 62 itmv 65 (286)
T COG2084 62 ITML 65 (286)
T ss_pred EEec
Confidence 9864
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.019 Score=54.38 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=62.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--cCcccccCCCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t~~~eal~dAD 174 (337)
+||.|+||+|.+|++++..|+..+. .|.. + +++.+... ++.+.... .....++ .+..+.++++|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~----~~~~~~~~-~~~~D~~~~~~l~~~~~~~d 66 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE-----EVRV--L--VRPTSDRR----NLEGLDVE-IVEGDLRDPASLRKAVAGCR 66 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC-----EEEE--E--EecCcccc----ccccCCce-EEEeeCCCHHHHHHHHhCCC
Confidence 4899999999999999999998774 2433 2 22222211 11110000 0001111 11234577899
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+||.+++.......+.......|+.....+.+.+.+. .-. .+|+++.
T Consensus 67 ~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~-~~v~~SS 113 (328)
T TIGR03466 67 ALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEA-GVE-RVVYTSS 113 (328)
T ss_pred EEEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHh-CCC-eEEEEec
Confidence 9998876432222334456777888778888877764 222 5555553
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.046 Score=52.21 Aligned_cols=115 Identities=14% Similarity=0.015 Sum_probs=62.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-----ec--Cccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-----GI--NPYE 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-----~t--~~~e 168 (337)
.++|.|+||+|+||++++..|+..|. .|.+...+. +.+... ..+.... ....++.. +. +-.+
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-----~V~~~~r~~----~~~~~~-~~~~~~~-~~~~~~~~~~~D~~d~~~~~~ 73 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY-----TINATVRDP----KDRKKT-DHLLALD-GAKERLKLFKADLLDEGSFEL 73 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-----EEEEEEcCC----cchhhH-HHHHhcc-CCCCceEEEeCCCCCchHHHH
Confidence 46899999999999999999998775 243322222 111111 0111000 00011211 11 1124
Q ss_pred ccCCCcEEEEecccCCCC-CC-chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 169 LFEDAEWALLIGAKPRGP-GM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 169 al~dADvVIitag~prk~-g~-~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.+++.|+||.++|..... .. .-...+..|..-...+.+.+.+. .....||++|
T Consensus 74 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~-~~~~~iv~~S 128 (325)
T PLN02989 74 AIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKV-SSVKRVILTS 128 (325)
T ss_pred HHcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHc-CCceEEEEec
Confidence 567899999988743211 11 12345677877777788877664 2223566655
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.029 Score=55.32 Aligned_cols=73 Identities=23% Similarity=0.345 Sum_probs=44.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
..+||+|+||+|.+|..++..|...+.- .+.|..+..+++. |...+.. . ..+.+..-+.+++.++|
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP----~~~l~~las~rsa----Gk~~~~~----~--~~~~v~~~~~~~~~~~D 71 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFP----YSSLKMLASARSA----GKKVTFE----G--RDYTVEELTEDSFDGVD 71 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCC----cceEEEEEccCCC----CCeeeec----C--ceeEEEeCCHHHHcCCC
Confidence 3479999999999999999988775442 1344433333322 2111111 1 12334333446789999
Q ss_pred EEEEecc
Q 019713 175 WALLIGA 181 (337)
Q Consensus 175 vVIitag 181 (337)
+|+++.+
T Consensus 72 ~vf~a~p 78 (344)
T PLN02383 72 IALFSAG 78 (344)
T ss_pred EEEECCC
Confidence 9999764
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.021 Score=54.47 Aligned_cols=99 Identities=17% Similarity=0.076 Sum_probs=56.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC--CCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~--dAD 174 (337)
|||.|+||+|+||++++..|...+- +.. + ++.... ...|+.|.. ...+.++ +.|
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g~------V~~--~--~~~~~~---~~~Dl~d~~-----------~~~~~~~~~~~D 56 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLGN------LIA--L--DVHSTD---YCGDFSNPE-----------GVAETVRKIRPD 56 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccCC------EEE--e--cccccc---ccCCCCCHH-----------HHHHHHHhcCCC
Confidence 5899999999999999998876551 322 1 221111 111332211 0112344 589
Q ss_pred EEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 175 vVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+||-+++..... ..........|+.-...+++.+.+. . +++|.+|
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~-g--~~~v~~S 103 (299)
T PRK09987 57 VIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEV-G--AWVVHYS 103 (299)
T ss_pred EEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEc
Confidence 999887643211 1122233467888888888888775 2 4555554
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.058 Score=51.00 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|||+||| .|.||.+++..|...+.
T Consensus 1 m~I~iIG-~G~mG~sla~~l~~~g~ 24 (275)
T PRK08507 1 MKIGIIG-LGLMGGSLGLALKEKGL 24 (275)
T ss_pred CEEEEEc-cCHHHHHHHHHHHhcCC
Confidence 4899999 59999999999988775
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.014 Score=54.17 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=58.0
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEEEE
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALL 178 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVIi 178 (337)
|.|+||+|++|++++..|+..+. .|.. + +++.+.......+ ... . +. .....++++++|+||.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~~~~--~~~-~----~~-~~~~~~~~~~~D~Vvh 63 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH-----EVTI--L--TRSPPAGANTKWE--GYK-P----WA-PLAESEALEGADAVIN 63 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC-----EEEE--E--eCCCCCCCcccce--eee-c----cc-ccchhhhcCCCCEEEE
Confidence 57999999999999999988764 2433 2 2222221110000 000 0 00 1234567899999999
Q ss_pred ecccCCCCC--C--chhhhHHhhHHHHHHHHHHHHhh
Q 019713 179 IGAKPRGPG--M--ERAGLLDINGQIFAEQGKALNAV 211 (337)
Q Consensus 179 tag~prk~g--~--~R~dll~~N~~I~~~i~~~I~~~ 211 (337)
+++.+...+ . ....+...|+...+.+.+.+.+.
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~ 100 (292)
T TIGR01777 64 LAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAA 100 (292)
T ss_pred CCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 888654322 1 22345667888888898888875
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.019 Score=61.02 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=63.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccE---EEecC---cc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREV---KIGIN---PY 167 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v---~i~t~---~~ 167 (337)
+++||.|+||+|+||++++..|... +. .|.. + ++....... +.... . .++ .++.. ..
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-----~V~~--l--~r~~~~~~~----~~~~~-~--~~~~~gDl~d~~~~l~ 377 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNY-----EVYG--L--DIGSDAISR----FLGHP-R--FHFVEGDISIHSEWIE 377 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCc-----EEEE--E--eCCchhhhh----hcCCC-c--eEEEeccccCcHHHHH
Confidence 4579999999999999999999873 43 1332 2 222211110 10000 0 011 11111 12
Q ss_pred cccCCCcEEEEecccCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ELFEDAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 eal~dADvVIitag~pr--k~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
++++++|+||-+|+... .......+....|+.-...+.+.+.+. . .++|.+|.
T Consensus 378 ~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~-~--~~~V~~SS 432 (660)
T PRK08125 378 YHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKY-N--KRIIFPST 432 (660)
T ss_pred HHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhc-C--CeEEEEcc
Confidence 45789999998876432 222234456778888888888888875 3 25665554
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.025 Score=56.19 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++||+|||+.|.||.+++..|...|.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~ 123 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY 123 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC
Confidence 347999999669999999999998774
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.07 Score=48.58 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|++|.|+||+|.+|.+++..|+..|.
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~ 26 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA 26 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC
Confidence 46899999999999999999998775
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.049 Score=52.02 Aligned_cols=113 Identities=14% Similarity=0.055 Sum_probs=60.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC------cccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------PYEL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~------~~ea 169 (337)
++|.|+||+|+||++++..|+..|. .|.+..-+.. ..+.+. .+.... ....++.+. .| -.++
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~~~r~~~-~~~~~~----~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~ 74 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRGY-----TVKATVRDLT-DRKKTE----HLLALD-GAKERLKLFKADLLEESSFEQA 74 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEEEECCCc-chHHHH----HHHhcc-CCCCceEEEecCCCCcchHHHH
Confidence 5899999999999999999998775 2433211111 111111 111100 001122211 11 1245
Q ss_pred cCCCcEEEEecccCC-CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCe-EEEEeC
Q 019713 170 FEDAEWALLIGAKPR-GPGMERAGLLDINGQIFAEQGKALNAVASRNV-KVIVVG 222 (337)
Q Consensus 170 l~dADvVIitag~pr-k~g~~R~dll~~N~~I~~~i~~~I~~~a~p~a-ivIvvt 222 (337)
++++|+||.+++... .......+++..|+.-...+.+.+.+. +++ .||++|
T Consensus 75 ~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~--~~v~rvV~~S 127 (322)
T PLN02986 75 IEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKET--PSVKRVILTS 127 (322)
T ss_pred HhCCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc--CCccEEEEec
Confidence 778999999887421 111122345677777777777776653 232 455554
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.028 Score=53.90 Aligned_cols=92 Identities=13% Similarity=0.117 Sum_probs=51.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC---C
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED---A 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d---A 173 (337)
|||+||| .|.||..++..|...+. .|.+ + |++.++++.. .+. ......+..+.+++ +
T Consensus 1 m~Ig~IG-lG~mG~~mA~~L~~~g~-----~v~v--~--dr~~~~~~~~----~~~------g~~~~~s~~~~~~~~~~a 60 (299)
T PRK12490 1 MKLGLIG-LGKMGGNMAERLREDGH-----EVVG--Y--DVNQEAVDVA----GKL------GITARHSLEELVSKLEAP 60 (299)
T ss_pred CEEEEEc-ccHHHHHHHHHHHhCCC-----EEEE--E--ECCHHHHHHH----HHC------CCeecCCHHHHHHhCCCC
Confidence 4899999 59999999999988764 2443 3 4555554432 211 12233333344444 6
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|+||++...+ +.++++...+.....++.+||..|+
T Consensus 61 dvVi~~vp~~---------------~~~~~v~~~i~~~l~~g~ivid~st 95 (299)
T PRK12490 61 RTIWVMVPAG---------------EVTESVIKDLYPLLSPGDIVVDGGN 95 (299)
T ss_pred CEEEEEecCc---------------hHHHHHHHHHhccCCCCCEEEECCC
Confidence 8998874211 1233333344433346667777754
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.14 Score=50.98 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+.+||.|+||+|.+|++++..|+..+.
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~ 85 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY 85 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 4557999999999999999999988764
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.021 Score=48.14 Aligned_cols=75 Identities=23% Similarity=0.244 Sum_probs=46.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc-----------------hhhHHHhHHHhHhhhccCCccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-----------------SLQALEGVAMELEDSLFPLLRE 159 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~-----------------~~~~l~g~a~DL~d~~~~~~~~ 159 (337)
.||+|+|+ |.+|+.++..|+..|+ + .+. ++|.|. ...|.+..+..|.... |. .+
T Consensus 3 ~~v~iiG~-G~vGs~va~~L~~~Gv-~---~i~--lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~n-p~-~~ 73 (135)
T PF00899_consen 3 KRVLIIGA-GGVGSEVAKNLARSGV-G---KIT--LVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEIN-PD-VE 73 (135)
T ss_dssp -EEEEEST-SHHHHHHHHHHHHHTT-S---EEE--EEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHS-TT-SE
T ss_pred CEEEEECc-CHHHHHHHHHHHHhCC-C---cee--ecCCcceeecccccccccccccchhHHHHHHHHHHHHhc-Cc-ee
Confidence 58999995 9999999999999988 2 244 444443 1224444444444433 32 23
Q ss_pred EEEecCc------ccccCCCcEEEEec
Q 019713 160 VKIGINP------YELFEDAEWALLIG 180 (337)
Q Consensus 160 v~i~t~~------~eal~dADvVIita 180 (337)
++..... .+.++++|+||.+.
T Consensus 74 v~~~~~~~~~~~~~~~~~~~d~vi~~~ 100 (135)
T PF00899_consen 74 VEAIPEKIDEENIEELLKDYDIVIDCV 100 (135)
T ss_dssp EEEEESHCSHHHHHHHHHTSSEEEEES
T ss_pred eeeeecccccccccccccCCCEEEEec
Confidence 4433222 25567999998874
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.012 Score=52.90 Aligned_cols=179 Identities=16% Similarity=0.181 Sum_probs=92.1
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC--cEE
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA--EWA 176 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA--DvV 176 (337)
|.|+||+|++|++++..|...+.. + +.+...+......... .++......+.. .....+.+++. |.|
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~-----v-~~~~~~~~~~~~~~~~-~~~~~~~~dl~~----~~~~~~~~~~~~~d~v 69 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHE-----V-IVLSRSSNSESFEEKK-LNVEFVIGDLTD----KEQLEKLLEKANIDVV 69 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTE-----E-EEEESCSTGGHHHHHH-TTEEEEESETTS----HHHHHHHHHHHTESEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCc-----c-cccccccccccccccc-ceEEEEEeeccc----cccccccccccCceEE
Confidence 789999999999999999988862 2 2222222111111111 000000000000 00122445555 999
Q ss_pred EEecccCCC--CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCC--C-CeEEe-----
Q 019713 177 LLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP--A-KNFHA----- 246 (337)
Q Consensus 177 Iitag~prk--~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p--~-kvIG~----- 246 (337)
+.+++.+.. ....-.+....|+...+.+.+.+.+. .. .++|+++- ..+-. ... ..| . .-+..
T Consensus 70 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~-~~~i~~sS-~~~y~----~~~-~~~~~e~~~~~~~~~Y~ 141 (236)
T PF01370_consen 70 IHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREA-GV-KRFIFLSS-ASVYG----DPD-GEPIDEDSPINPLSPYG 141 (236)
T ss_dssp EEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TT-SEEEEEEE-GGGGT----SSS-SSSBETTSGCCHSSHHH
T ss_pred EEeeccccccccccccccccccccccccccccccccc-cc-cccccccc-ccccc----ccc-ccccccccccccccccc
Confidence 998876431 11234466788999999999999987 33 46666664 21100 000 010 0 00111
Q ss_pred cCchhHHHHHHHHHHHhCCCcccccceEEEecc----C-CCcccccccceEcCee
Q 019713 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNH----S-TTQVPDFLNARINGLP 296 (337)
Q Consensus 247 gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnH----G-~t~vp~~S~a~V~G~p 296 (337)
.+.....++....+++.++....++-..|+|-+ + ...++.|-..-..|+|
T Consensus 142 ~~K~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (236)
T PF01370_consen 142 ASKRAAEELLRDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKP 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhHHhhcCCc
Confidence 111222344444555668888777755789966 2 3344555444445654
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.11 Score=49.92 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=60.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc--hhhHHHhHHHhHhhhccCCcccEEEe-c--Ccc---
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER--SLQALEGVAMELEDSLFPLLREVKIG-I--NPY--- 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~--~~~~l~g~a~DL~d~~~~~~~~v~i~-t--~~~--- 167 (337)
.+||.|+||+|++|++++..|+..+. .|.+ ++... ..+... ...++.. ....++... . .+.
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~-----~V~~--~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~D~~~~~~l 73 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAGY-----KVVV--IDNLDNSSEEALR-RVKELAG---DLGDNLVFHKVDLRDKEAL 73 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE--EeCCCcchHHHHH-HHHHhhc---ccCccceEEecCcCCHHHH
Confidence 46899999999999999999988763 2433 22111 111111 1111110 000111111 0 111
Q ss_pred -cccC--CCcEEEEecccCC-CCC-CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 -ELFE--DAEWALLIGAKPR-GPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 -eal~--dADvVIitag~pr-k~g-~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.++ +.|+||.+++.+. ... ......+..|......+.+.+.+. ... .+|.+|.
T Consensus 74 ~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~-~~v~~Ss 132 (352)
T PLN02240 74 EKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKH-GCK-KLVFSSS 132 (352)
T ss_pred HHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEEcc
Confidence 2232 6899999887542 111 123456778888777888877764 222 4566553
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.036 Score=53.18 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=21.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|||+||| .|.||..++..|...+.
T Consensus 1 m~Ig~IG-lG~MG~~mA~~L~~~g~ 24 (301)
T PRK09599 1 MQLGMIG-LGRMGGNMARRLLRGGH 24 (301)
T ss_pred CEEEEEc-ccHHHHHHHHHHHHCCC
Confidence 4899999 59999999999998764
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.031 Score=51.44 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|++|.|+||+|.+|..++..|+..|.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~ 26 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGW 26 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC
Confidence 35799999999999999999998774
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.13 Score=49.80 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
+.+||+||| .|.||.+++..|...+
T Consensus 35 ~~~kI~IIG-~G~mG~slA~~L~~~G 59 (304)
T PLN02256 35 RKLKIGIVG-FGNFGQFLAKTFVKQG 59 (304)
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHhCC
Confidence 457999999 5999999999998755
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.044 Score=46.63 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+..+|+|+|+ |.+|..++..|...+. . .+.+ + +++.++++..+.++.... .... ..+..+.++++|
T Consensus 18 ~~~~i~iiG~-G~~g~~~a~~l~~~g~-~---~v~v--~--~r~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~D 83 (155)
T cd01065 18 KGKKVLILGA-GGAARAVAYALAELGA-A---KIVI--V--NRTLEKAKALAERFGELG----IAIA-YLDLEELLAEAD 83 (155)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC-C---EEEE--E--cCCHHHHHHHHHHHhhcc----ccee-ecchhhccccCC
Confidence 3478999995 9999999999987652 1 2443 2 455556555444333110 0111 234445589999
Q ss_pred EEEEeccc
Q 019713 175 WALLIGAK 182 (337)
Q Consensus 175 vVIitag~ 182 (337)
+||.+...
T Consensus 84 vvi~~~~~ 91 (155)
T cd01065 84 LIINTTPV 91 (155)
T ss_pred EEEeCcCC
Confidence 99998643
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.027 Score=51.97 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=25.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..+++||.|+||+|.+|..++..|+..+.
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~ 42 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGF 42 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCC
Confidence 35578999999999999999999988764
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.042 Score=53.83 Aligned_cols=90 Identities=12% Similarity=0.075 Sum_probs=52.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|+||| .|.||..+|..|...|. .|.. + |++.+.... . +....+..+.+++||+|
T Consensus 147 ~~VgIIG-~G~IG~~vA~~L~~~G~-----~V~~--~--d~~~~~~~~----~----------~~~~~~l~ell~~aDiV 202 (330)
T PRK12480 147 MTVAIIG-TGRIGAATAKIYAGFGA-----TITA--Y--DAYPNKDLD----F----------LTYKDSVKEAIKDADII 202 (330)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----EEEE--E--eCChhHhhh----h----------hhccCCHHHHHhcCCEE
Confidence 5899999 59999999999876553 2433 3 333222110 0 01123456789999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
++.... . ..+..++. .+.+.. .++++++|+++--
T Consensus 203 il~lP~-----t------~~t~~li~--~~~l~~-mk~gavlIN~aRG 236 (330)
T PRK12480 203 SLHVPA-----N------KESYHLFD--KAMFDH-VKKGAILVNAARG 236 (330)
T ss_pred EEeCCC-----c------HHHHHHHh--HHHHhc-CCCCcEEEEcCCc
Confidence 987521 1 11112221 122333 3688999998853
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.041 Score=55.83 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=24.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++||.|+||+|+||++++..|+..|.
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~ 72 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRGY 72 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 3457899999999999999999998764
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.22 Score=45.39 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|++++..|+..|.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~ 31 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGA 31 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 6899999999999999999988764
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.064 Score=55.82 Aligned_cols=127 Identities=19% Similarity=0.137 Sum_probs=79.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCc-ccEEEec-----Cc
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI-----NP 166 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~t-----~~ 166 (337)
+-+-++|-|+||+|.+|+.++..++..+. -.|.+++. ++.++.-..++|.+.. +.. ....+++ --
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~~p------~~i~l~~~--~E~~~~~i~~el~~~~-~~~~~~~~igdVrD~~~~ 317 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKFNP------KEIILFSR--DEYKLYLIDMELREKF-PELKLRFYIGDVRDRDRV 317 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhcCC------CEEEEecC--chHHHHHHHHHHHhhC-CCcceEEEecccccHHHH
Confidence 34457899999999999999999988754 24445544 4556655666676542 211 1112221 12
Q ss_pred ccccCC--CcEEEEecccCCCCCCchh--hhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC----CCchhHH
Q 019713 167 YELFED--AEWALLIGAKPRGPGMERA--GLLDINGQIFAEQGKALNAVASRNVKVIVVG----NPCNTNA 229 (337)
Q Consensus 167 ~eal~d--ADvVIitag~prk~g~~R~--dll~~N~~I~~~i~~~I~~~a~p~aivIvvt----NPvd~~t 229 (337)
..++++ .|+|+-+|+...-|-+|.. +-...|+-=-+.++++..+. .=...|.+-| ||.|+|.
T Consensus 318 ~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~-~V~~~V~iSTDKAV~PtNvmG 387 (588)
T COG1086 318 ERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKN-GVKKFVLISTDKAVNPTNVMG 387 (588)
T ss_pred HHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHh-CCCEEEEEecCcccCCchHhh
Confidence 467788 9999999886666655543 44666766666677766664 3343444443 8988863
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.052 Score=54.28 Aligned_cols=27 Identities=26% Similarity=0.169 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++||+|+||+|.+|..+...|.....
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~ 63 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPD 63 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCC
Confidence 446999999999999999999988754
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.037 Score=51.65 Aligned_cols=95 Identities=16% Similarity=0.224 Sum_probs=57.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC--CcE
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--AEW 175 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d--ADv 175 (337)
||.|+||+|++|++++..|...+. .|.. + .+. ..|+.+.. ...+++++ .|+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-----~v~~--~--~r~-------~~d~~~~~-----------~~~~~~~~~~~d~ 53 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-----VVVA--L--TSS-------QLDLTDPE-----------ALERLLRAIRPDA 53 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-----EEEE--e--CCc-------ccCCCCHH-----------HHHHHHHhCCCCE
Confidence 689999999999999999988664 2332 1 221 12222211 11233444 499
Q ss_pred EEEecccCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 176 ALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 176 VIitag~prk~g--~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
||.+++....+. .....+...|......+++.+.+. . ..+|++|
T Consensus 54 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~--~~~v~~S 99 (287)
T TIGR01214 54 VVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARH-G--ARLVHIS 99 (287)
T ss_pred EEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEe
Confidence 998887543221 123445677888888888887764 2 2555555
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.084 Score=49.17 Aligned_cols=96 Identities=20% Similarity=0.242 Sum_probs=59.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
+||+|||+ |.||..++-.+-.+.. + -++.+. .|.+.+++.. ++... ..+.. ++..+.+.+.|++
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~-~--~e~v~v---~D~~~ek~~~----~~~~~---~~~~~--s~ide~~~~~Dlv 64 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRV-D--FELVAV---YDRDEEKAKE----LEASV---GRRCV--SDIDELIAEVDLV 64 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCc-c--eeEEEE---ecCCHHHHHH----HHhhc---CCCcc--ccHHHHhhcccee
Confidence 58999996 9999999887766542 1 112221 3556666543 22211 11111 3334555999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
|.+|+ .+.+++++.++-+. +.|++|+-++-=+
T Consensus 65 VEaAS----------------~~Av~e~~~~~L~~-g~d~iV~SVGALa 96 (255)
T COG1712 65 VEAAS----------------PEAVREYVPKILKA-GIDVIVMSVGALA 96 (255)
T ss_pred eeeCC----------------HHHHHHHhHHHHhc-CCCEEEEechhcc
Confidence 99885 46678888777774 6787766665444
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.09 Score=49.77 Aligned_cols=69 Identities=23% Similarity=0.383 Sum_probs=41.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|+||+|||+ |.||..++..|...+. + . .+ ..++ |++.++++..+. . + .....++..+.+.++|+
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~-~-~-el-v~v~--d~~~~~a~~~a~----~---~--~~~~~~~~~ell~~~Dv 64 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRI-N-A-EL-YAFY--DRNLEKAENLAS----K---T--GAKACLSIDELVEDVDL 64 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCC-C-e-EE-EEEE--CCCHHHHHHHHH----h---c--CCeeECCHHHHhcCCCE
Confidence 479999995 9999999998876542 1 0 12 2223 445555443211 1 1 12233444444589999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
|++++
T Consensus 65 Vvi~a 69 (265)
T PRK13304 65 VVECA 69 (265)
T ss_pred EEEcC
Confidence 99986
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.11 Score=46.16 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
||+|||+ |.+|+.++..|+..|+
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gv 23 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGV 23 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC
Confidence 6999995 9999999999999887
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.13 Score=46.47 Aligned_cols=26 Identities=23% Similarity=0.128 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~ 32 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA 32 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC
Confidence 46899999999999999999998774
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.14 Score=49.26 Aligned_cols=117 Identities=19% Similarity=0.194 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec----C-----
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI----N----- 165 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t----~----- 165 (337)
..+.|.|+||+.-||.++|+.|+..|.. +.+. .+..++++-++.++.... +.. ++.+.. +
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~-----l~lv----ar~~rrl~~v~~~l~~~~-~~~-~v~~~~~Dvs~~~~~~ 79 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAK-----LVLV----ARRARRLERVAEELRKLG-SLE-KVLVLQLDVSDEESVK 79 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCc-----eEEe----ehhhhhHHHHHHHHHHhC-CcC-ccEEEeCccCCHHHHH
Confidence 3467899999999999999999998872 3332 345566666666676654 222 222211 1
Q ss_pred -----cccccCCCcEEEEecccCCCCCC-c------hhhhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 166 -----PYELFEDAEWALLIGAKPRGPGM-E------RAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 166 -----~~eal~dADvVIitag~prk~g~-~------R~dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
....|.+.|+.|..||..+ .+. + ....++.| +-+-+...+.+++- + ++.|++++...
T Consensus 80 ~~~~~~~~~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r-~-~GhIVvisSia 152 (282)
T KOG1205|consen 80 KFVEWAIRHFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKR-N-DGHIVVISSIA 152 (282)
T ss_pred HHHHHHHHhcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhc-C-CCeEEEEeccc
Confidence 1135779999999999876 332 1 22344444 56677888888885 3 67888877644
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.079 Score=50.66 Aligned_cols=114 Identities=10% Similarity=0.001 Sum_probs=60.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecC---------c
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN---------P 166 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~---------~ 166 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+. +++.++++....++.... .+ ...++.. -
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~-----~Vv~~----~R~~~~~~~~~~~l~~v~-~~--~~Dl~d~~~v~~~~~~~ 93 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA-----HVIVP----ARRPDVAREALAGIDGVE-VV--MLDLADLESVRAFAERF 93 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhhhCe-EE--EccCCCHHHHHHHHHHH
Confidence 35899999999999999999998775 24442 344444443333332111 00 1111100 0
Q ss_pred ccccCCCcEEEEecccCCCCCC---c-hhhhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 YELFEDAEWALLIGAKPRGPGM---E-RAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 ~eal~dADvVIitag~prk~g~---~-R~dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+.+.|++|..+|....+.. + -...+..| ..+.+.+.+.+++. ..+.||+++-
T Consensus 94 ~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~--~~~~iV~vSS 156 (315)
T PRK06196 94 LDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAG--AGARVVALSS 156 (315)
T ss_pred HhcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCeEEEECC
Confidence 1123578999998875322211 1 11223444 33456666666663 3456777663
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.034 Score=52.11 Aligned_cols=115 Identities=18% Similarity=0.171 Sum_probs=60.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE---Eec--CcccccCC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK---IGI--NPYELFED 172 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~---i~t--~~~eal~d 172 (337)
||.|+||+|++|.+++..|+..+.-. .|. .++........+ ...++.+. + ...+. ++. +..+++++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~---~v~--~~~~~~~~~~~~-~~~~~~~~--~-~~~~~~~Dl~~~~~~~~~~~~ 71 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDA---EVI--VLDKLTYAGNLE-NLADLEDN--P-RYRFVKGDIGDRELVSRLFTE 71 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCC---EEE--EecCCCcchhhh-hhhhhccC--C-CcEEEEcCCcCHHHHHHHHhh
Confidence 58999999999999999998754210 132 222211101111 10111110 0 00111 111 11234555
Q ss_pred --CcEEEEecccCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 173 --AEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 173 --ADvVIitag~pr--k~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+|+||.+++... .....-...+..|..-...+++.+.+. ..+..+|.+|
T Consensus 72 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~i~~S 124 (317)
T TIGR01181 72 HQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKY-WHEFRFHHIS 124 (317)
T ss_pred cCCCEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhc-CCCceEEEee
Confidence 899998876432 111122345677888788888887775 3455666655
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.14 Score=46.48 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..+.
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~ 31 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGA 31 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCC
Confidence 6899999999999999999988774
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.11 Score=47.61 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~ 32 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA 32 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.17 Score=45.77 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~ 30 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGA 30 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.19 Score=53.85 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=22.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++||+||| .|.||..++..|...+.
T Consensus 50 ~~~~kIgIIG-~G~mG~slA~~L~~~G~ 76 (667)
T PLN02712 50 TTQLKIAIIG-FGNYGQFLAKTLISQGH 76 (667)
T ss_pred CCCCEEEEEc-cCHHHHHHHHHHHHCCC
Confidence 4457999999 59999999999987763
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.051 Score=56.09 Aligned_cols=103 Identities=15% Similarity=0.199 Sum_probs=57.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCccccc---
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF--- 170 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal--- 170 (337)
..+.+|++|| .|.||..+|..|+..|. .|.+ + |++.++.+..+..... . .. ..+....+..+..
T Consensus 4 ~~~~~IG~IG-LG~MG~~mA~nL~~~G~-----~V~V--~--NRt~~k~~~l~~~~~~-~-Ga-~~~~~a~s~~e~v~~l 70 (493)
T PLN02350 4 AALSRIGLAG-LAVMGQNLALNIAEKGF-----PISV--Y--NRTTSKVDETVERAKK-E-GN-LPLYGFKDPEDFVLSI 70 (493)
T ss_pred CCCCCEEEEe-eHHHHHHHHHHHHhCCC-----eEEE--E--CCCHHHHHHHHHhhhh-c-CC-cccccCCCHHHHHhcC
Confidence 4467899999 79999999999999886 2544 2 5555565543211110 0 00 1122222233333
Q ss_pred CCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
+.+|+||++... .+.++++...+.....++.+||..||-
T Consensus 71 ~~~dvIi~~v~~---------------~~aV~~Vi~gl~~~l~~G~iiID~sT~ 109 (493)
T PLN02350 71 QKPRSVIILVKA---------------GAPVDQTIKALSEYMEPGDCIIDGGNE 109 (493)
T ss_pred CCCCEEEEECCC---------------cHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 349999987421 122333333333333567777878874
|
|
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.063 Score=52.40 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=44.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.++|+| ||+|.||..+...|..+++-= -.|+++.... ...|..+.+. ...+.+..-+.++|++.|+
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv----~~l~l~~s~~---~s~gk~i~f~------g~~~~V~~l~~~~f~~vDi 68 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEI----EQISIVEIEP---FGEEQGIRFN------NKAVEQIAPEEVEWADFNY 68 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCch----hheeeccccc---ccCCCEEEEC------CEEEEEEECCccCcccCCE
Confidence 368999 999999999999888777621 1344544320 1112111111 2345555445678999999
Q ss_pred EEEecc
Q 019713 176 ALLIGA 181 (337)
Q Consensus 176 VIitag 181 (337)
+++ +|
T Consensus 69 a~f-ag 73 (322)
T PRK06901 69 VFF-AG 73 (322)
T ss_pred EEE-cC
Confidence 999 54
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.22 Score=44.89 Aligned_cols=25 Identities=16% Similarity=0.038 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..+.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~ 31 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGY 31 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC
Confidence 6899999999999999999987664
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.046 Score=51.23 Aligned_cols=100 Identities=24% Similarity=0.243 Sum_probs=57.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC-cEE
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA-EWA 176 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA-DvV 176 (337)
+|.|+||+|+||++++..|...+. .|.. + ++......... .+..+. ...+.-.....+.+++. |.|
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~~---~~~~~~-~~d~~~~~~~~~~~~~~~d~v 68 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGH-----DVRG--L--DRLRDGLDPLL---SGVEFV-VLDLTDRDLVDELAKGVPDAV 68 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCC-----eEEE--E--eCCCccccccc---ccccee-eecccchHHHHHHHhcCCCEE
Confidence 499999999999999999998754 2332 1 22222211110 000000 00000001122445555 999
Q ss_pred EEecccCCCCCCch---hhhHHhhHHHHHHHHHHHHh
Q 019713 177 LLIGAKPRGPGMER---AGLLDINGQIFAEQGKALNA 210 (337)
Q Consensus 177 Iitag~prk~g~~R---~dll~~N~~I~~~i~~~I~~ 210 (337)
|.+++....++..+ .+....|+.-.+.+.+...+
T Consensus 69 ih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~ 105 (314)
T COG0451 69 IHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARA 105 (314)
T ss_pred EEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 98887654343322 24778899999999998887
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.19 Score=46.95 Aligned_cols=46 Identities=22% Similarity=0.116 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ + +++.+.++....++.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~ 51 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM-----KLVL--A--DVQQDALDRAVAELR 51 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-----EEEE--E--eCChHHHHHHHHHHH
Confidence 36899999999999999999998775 2443 2 344445554444443
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.048 Score=53.41 Aligned_cols=74 Identities=27% Similarity=0.303 Sum_probs=43.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHH-HhHhhhccCCcccEEEecCcccccCCCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA-MELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a-~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
++||+|+||+|.||+.+...|..... .- ..+.++-+.++ .|.. .++..-.. .+.-...+..+++++|
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f-~~---~~~~~~AS~rS----aG~~~~~f~~~~~----~v~~~~~~~~~~~~~D 68 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHF-PF---EELVLLASARS----AGKKYIEFGGKSI----GVPEDAADEFVFSDVD 68 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCC-Cc---ceEEEEecccc----cCCccccccCccc----cCccccccccccccCC
Confidence 46999999999999999999987533 11 12333333332 1221 22221110 1111113557788999
Q ss_pred EEEEecc
Q 019713 175 WALLIGA 181 (337)
Q Consensus 175 vVIitag 181 (337)
+|++++|
T Consensus 69 ivf~~ag 75 (334)
T COG0136 69 IVFFAAG 75 (334)
T ss_pred EEEEeCc
Confidence 9999875
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.2 Score=45.60 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~ 49 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA-----KVVI----ADLNDEAAAAAAEALQ 49 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHH
Confidence 35899999999999999999988764 2443 2445555554444443
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.041 Score=55.52 Aligned_cols=105 Identities=17% Similarity=0.144 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..+|+|+|+ |.+|..++..|...|+. .|.+ .+++.++++..+.++.. ......+..+.+.++|+
T Consensus 180 ~~~VlViGa-G~iG~~~a~~L~~~G~~----~V~v----~~rs~~ra~~la~~~g~-------~~i~~~~l~~~l~~aDv 243 (417)
T TIGR01035 180 GKKALLIGA-GEMGELVAKHLLRKGVG----KILI----ANRTYERAEDLAKELGG-------EAVKFEDLEEYLAEADI 243 (417)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCCC----EEEE----EeCCHHHHHHHHHHcCC-------eEeeHHHHHHHHhhCCE
Confidence 469999995 99999999999886642 2444 24555555544433321 11111234577889999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHH
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t 229 (337)
||.+.+.|.. -. +.+.++ .+..-.....+++-+++|-|+=.
T Consensus 244 Vi~aT~s~~~-ii--------~~e~l~----~~~~~~~~~~~viDla~Prdid~ 284 (417)
T TIGR01035 244 VISSTGAPHP-IV--------SKEDVE----RALRERTRPLFIIDIAVPRDVDP 284 (417)
T ss_pred EEECCCCCCc-eE--------cHHHHH----HHHhcCCCCeEEEEeCCCCCCCh
Confidence 9988655431 01 111122 21111012458889999977643
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.05 Score=48.61 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=46.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--cC---ccccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--IN---PYELF 170 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t~---~~eal 170 (337)
.++|.|+||+|.+|..++..|+..+. .+.+ + +++.++++..+.++.+.. . ..+... .+ ..+++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~-----~V~l--~--~R~~~~~~~l~~~l~~~~-~--~~~~~~~~~~~~~~~~~~ 95 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGA-----RVVL--V--GRDLERAQKAADSLRARF-G--EGVGAVETSDDAARAAAI 95 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE--E--cCCHHHHHHHHHHHHhhc-C--CcEEEeeCCCHHHHHHHH
Confidence 46999999889999999999987652 2443 2 456666666555454211 1 122221 11 13678
Q ss_pred CCCcEEEEecc
Q 019713 171 EDAEWALLIGA 181 (337)
Q Consensus 171 ~dADvVIitag 181 (337)
+++|+||.+..
T Consensus 96 ~~~diVi~at~ 106 (194)
T cd01078 96 KGADVVFAAGA 106 (194)
T ss_pred hcCCEEEECCC
Confidence 99999888653
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.25 Score=44.73 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=24.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++++.|+||+|.+|..++..|+..+.
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l~~~G~ 31 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAFAKAGW 31 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 3467899999999999999999998775
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.18 Score=47.93 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=43.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
.++||+|.||+|.||..+...+...+-+ .+.-. +++......| -|......--...+.++.+......++|
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~----~L~aa---~~~~~~~~~g--~d~ge~~g~~~~gv~v~~~~~~~~~~~D 71 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDL----ELVAA---FDRPGSLSLG--SDAGELAGLGLLGVPVTDDLLLVKADAD 71 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCc----eEEEE---EecCCccccc--cchhhhccccccCceeecchhhcccCCC
Confidence 3689999999999999999988776532 12211 2333222211 1222211111123455555567788999
Q ss_pred EEE-Ee
Q 019713 175 WAL-LI 179 (337)
Q Consensus 175 vVI-it 179 (337)
++| +|
T Consensus 72 V~IDFT 77 (266)
T COG0289 72 VLIDFT 77 (266)
T ss_pred EEEECC
Confidence 998 44
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.1 Score=49.09 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=75.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec---------Ccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NPY 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t---------~~~ 167 (337)
+-|.|.||++-+|.++|..|+..|. .+.| ..+..++|+.++.++.+.. .+...+.++. ...
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~-----~vvl----~aRR~drL~~la~~~~~~~-~~~~~~DVtD~~~~~~~i~~~~ 76 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA-----KVVL----AARREERLEALADEIGAGA-ALALALDVTDRAAVEAAIEALP 76 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC-----eEEE----EeccHHHHHHHHHhhccCc-eEEEeeccCCHHHHHHHHHHHH
Confidence 4578999999999999999999887 2554 4678899999998888411 1111222321 123
Q ss_pred cccCCCcEEEEecccCCCCCC------chhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ELFEDAEWALLIGAKPRGPGM------ERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 eal~dADvVIitag~prk~g~------~R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+.+.|++|..||.-+..-. +-..+++.|+. ..+.+.+.+.+- ..+-||+++-
T Consensus 77 ~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r--~~G~IiN~~S 140 (246)
T COG4221 77 EEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVER--KSGHIINLGS 140 (246)
T ss_pred HhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhc--CCceEEEecc
Confidence 567889999999886443111 23356778865 344555666663 4557788764
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.26 Score=44.62 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|++++..|+..+.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~ 28 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA 28 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.056 Score=49.54 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|+|.|+||+|.+|.+++..|+..|.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~ 25 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH 25 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998764
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.16 Score=54.60 Aligned_cols=94 Identities=19% Similarity=0.155 Sum_probs=55.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
.||+||| .|.||.+++..|...+... .|.. + |++.++++. +.+. . . .....++..+++.++|+|
T Consensus 4 ~~I~IIG-~G~mG~ala~~l~~~G~~~---~V~~--~--d~~~~~~~~-a~~~---g--~--~~~~~~~~~~~~~~aDvV 67 (735)
T PRK14806 4 GRVVVIG-LGLIGGSFAKALRERGLAR---EVVA--V--DRRAKSLEL-AVSL---G--V--IDRGEEDLAEAVSGADVI 67 (735)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCCC---EEEE--E--ECChhHHHH-HHHC---C--C--CCcccCCHHHHhcCCCEE
Confidence 6899999 5999999999998877421 2433 2 445444432 1111 1 1 001123345668899999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
|++... ..+.++.+.+.++..++++|+.++
T Consensus 68 ilavp~----------------~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 68 VLAVPV----------------LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred EECCCH----------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 997521 234555556655545666655454
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.071 Score=52.04 Aligned_cols=74 Identities=20% Similarity=0.170 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
...+++||| +|.+|...+..+....-+ ..|.+ + +++.++++..+.++.+. ..++....+..+++++||
T Consensus 127 ~~~~lgiiG-~G~qA~~~l~al~~~~~~---~~v~V--~--~r~~~~~~~~~~~~~~~----g~~v~~~~~~~eav~~aD 194 (325)
T TIGR02371 127 DSSVLGIIG-AGRQAWTQLEALSRVFDL---EEVSV--Y--CRTPSTREKFALRASDY----EVPVRAATDPREAVEGCD 194 (325)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCC---CEEEE--E--CCCHHHHHHHHHHHHhh----CCcEEEeCCHHHHhccCC
Confidence 357999999 599999866665442222 23544 3 56667777666655532 224566667789999999
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+|+.+-
T Consensus 195 iVitaT 200 (325)
T TIGR02371 195 ILVTTT 200 (325)
T ss_pred EEEEec
Confidence 998753
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.099 Score=49.24 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=59.4
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCccc-----ccCCC
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE-----LFEDA 173 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~e-----al~dA 173 (337)
|.|+||+|++|++++..|...+.. .|.+ ++.......+. ++.... ....+... +..+ .+.+.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~----~v~~--~~~~~~~~~~~----~~~~~~--~~~d~~~~-~~~~~~~~~~~~~~ 67 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGIT----DILV--VDNLRDGHKFL----NLADLV--IADYIDKE-DFLDRLEKGAFGKI 67 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCc----eEEE--EecCCCchhhh----hhhhee--eeccCcch-hHHHHHHhhccCCC
Confidence 579999999999999999987741 1322 22211111111 011000 00001000 0111 23589
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|+||.+++.+.....+.......|..-...+.+.+.+. . ..+|.+|.
T Consensus 68 D~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~--~~~v~~SS 114 (314)
T TIGR02197 68 EAIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEK-G--IPFIYASS 114 (314)
T ss_pred CEEEECccccCccccchHHHHHHHHHHHHHHHHHHHHh-C--CcEEEEcc
Confidence 99999887543222233455678888888888888775 2 35666663
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.056 Score=48.90 Aligned_cols=27 Identities=26% Similarity=0.195 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+..+|.|+||+|.+|++++..|+..+.
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~ 30 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF 30 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 446899999999999999999998875
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.42 Score=43.10 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~ 31 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGA 31 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.14 Score=51.65 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=54.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC-cccEEEec--CcccccCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGI--NPYELFED 172 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~t--~~~eal~d 172 (337)
.++|.|+||+|.+|.+++..|+..|. .+.+ + +++.++++.. +.+..... .....++. +..+.+.+
T Consensus 178 gK~VLITGASgGIG~aLA~~La~~G~-----~Vi~--l--~r~~~~l~~~---~~~~~~~v~~v~~Dvsd~~~v~~~l~~ 245 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQQGA-----KVVA--L--TSNSDKITLE---INGEDLPVKTLHWQVGQEAALAELLEK 245 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHH---HhhcCCCeEEEEeeCCCHHHHHHHhCC
Confidence 46899999999999999999998775 2433 2 3333333211 11111000 00111111 01234678
Q ss_pred CcEEEEecccCCCCCCch---hhhHHhhHH----HHHHHHHHHHh
Q 019713 173 AEWALLIGAKPRGPGMER---AGLLDINGQ----IFAEQGKALNA 210 (337)
Q Consensus 173 ADvVIitag~prk~g~~R---~dll~~N~~----I~~~i~~~I~~ 210 (337)
.|++|..+|.......+. .+.++.|.. +++.+.+.+++
T Consensus 246 IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~ 290 (406)
T PRK07424 246 VDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKT 290 (406)
T ss_pred CCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998877543222222 233455543 45555565654
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.27 Score=45.11 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|++++..|+..|.
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~ 37 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGA 37 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC
Confidence 36899999999999999999998775
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.45 Score=45.14 Aligned_cols=116 Identities=15% Similarity=0.046 Sum_probs=61.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--c-------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------- 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~------- 166 (337)
++|.|+||+|.+|.+++..|+..|. .|.+.. .+.....++....++++.. .++.. ..| +
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~-----~V~i~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~v~~~ 124 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGA-----DIALNY--LPEEEQDAAEVVQLIQAEG----RKAVALPGDLKDEAFCRQL 124 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCC-----EEEEEe--CCcchHHHHHHHHHHHHcC----CeEEEEecCCCCHHHHHHH
Confidence 5899999999999999999998775 244422 2222222222222233211 11111 111 1
Q ss_pred ----ccccCCCcEEEEecccC--CCCC--Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 ----YELFEDAEWALLIGAKP--RGPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 ----~eal~dADvVIitag~p--rk~g--~~R---~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+...|++|..+|.. ..+- .+. ...+..|+.-...+.+.+.++..+++.||+++.
T Consensus 125 ~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 125 VERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 12234689999988853 2221 122 234666655444455554443234456777664
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.062 Score=51.56 Aligned_cols=63 Identities=10% Similarity=0.116 Sum_probs=40.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+||| .|.||..++..|...+. .+.+ +|.+ .+ .+. +.+. ......+..+..+++|+|
T Consensus 1 m~Ig~IG-lG~MG~~ma~~L~~~G~-----~v~v--~~~~--~~-~~~----~~~~------g~~~~~s~~~~~~~advV 59 (292)
T PRK15059 1 MKLGFIG-LGIMGTPMAINLARAGH-----QLHV--TTIG--PV-ADE----LLSL------GAVSVETARQVTEASDII 59 (292)
T ss_pred CeEEEEc-cCHHHHHHHHHHHHCCC-----eEEE--EeCC--Hh-HHH----HHHc------CCeecCCHHHHHhcCCEE
Confidence 4899999 59999999999998875 2443 3332 21 221 2211 112223455678899999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
|++.
T Consensus 60 i~~v 63 (292)
T PRK15059 60 FIMV 63 (292)
T ss_pred EEeC
Confidence 9874
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.033 Score=53.37 Aligned_cols=128 Identities=15% Similarity=0.109 Sum_probs=72.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc----CCCCCCCceEEEeccccc--hhhH--HHhHHHhHhhhccCCcccEEEecCccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAG----EVLGPDQPIALKLLGSER--SLQA--LEGVAMELEDSLFPLLREVKIGINPYE 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~----~l~~e~~~v~L~L~d~d~--~~~~--l~g~a~DL~d~~~~~~~~v~i~t~~~e 168 (337)
.||.|.|| |..|.+++..|... |+-.++-.-.+.++|.+- ..++ +.....++.+.. . . ....+..+
T Consensus 26 ~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~-~---~-~~~~~L~e 99 (279)
T cd05312 26 QRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD-E---E-KEGKSLLE 99 (279)
T ss_pred cEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc-C---c-ccCCCHHH
Confidence 59999995 99999999888765 552111111345555431 0111 222222222211 0 0 12245678
Q ss_pred ccC--CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc---hhHHHHHHHHCCCCCCCe
Q 019713 169 LFE--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNAPSIPAKN 243 (337)
Q Consensus 169 al~--dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv---d~~t~i~~k~s~~~p~kv 243 (337)
+++ ++|+.|=+.+.| | -+-+++.+.|.++ +++.+|.-.+||. +....-+++++.+ +.+
T Consensus 100 ~i~~v~ptvlIG~S~~~---g-----------~ft~evv~~Ma~~-~~~PIIFaLSNPt~~~E~~pe~a~~~t~G--~ai 162 (279)
T cd05312 100 VVKAVKPTVLIGLSGVG---G-----------AFTEEVVRAMAKS-NERPIIFALSNPTSKAECTAEDAYKWTDG--RAL 162 (279)
T ss_pred HHHhcCCCEEEEeCCCC---C-----------CCCHHHHHHHHhc-CCCCEEEECCCcCCccccCHHHHHHhhcC--CEE
Confidence 899 899988654432 2 1225677778877 6888999999996 4455555565421 135
Q ss_pred EEec
Q 019713 244 FHAL 247 (337)
Q Consensus 244 IG~g 247 (337)
|++|
T Consensus 163 ~ATG 166 (279)
T cd05312 163 FASG 166 (279)
T ss_pred EEeC
Confidence 5555
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.1 Score=48.82 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++|.|+||+|.||.+++..|+..|.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~ 29 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH 29 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC
Confidence 46799999999999999999988764
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.35 Score=43.33 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++++|.|+||+|.+|..++..|+..+.
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~ 31 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA 31 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 346899999999999999999998776
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.34 Score=43.93 Aligned_cols=115 Identities=12% Similarity=0.076 Sum_probs=61.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch-hhHHHhHHHhHhhhccCCc---ccEEEecC--------
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLL---REVKIGIN-------- 165 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~-~~~l~g~a~DL~d~~~~~~---~~v~i~t~-------- 165 (337)
||.|+||+|.+|.+++..|+..|. .|.+ ++ ++ .+.++....++.+...... ....++..
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~-----~v~~--~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 71 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA-----KVFL--TD--INDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLA 71 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-----EEEE--Ee--CCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHH
Confidence 589999999999999999998774 2443 22 22 3444444333432210000 01111110
Q ss_pred -cccccCCCcEEEEecccCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 166 -PYELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 166 -~~eal~dADvVIitag~prk~g---~~---R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
-.+.+...|+||..+|...... .+ -...+..|.. ..+.+.+.+++. +.+.||+++.
T Consensus 72 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~ii~~ss 138 (251)
T PRK07069 72 QAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRAS--QPASIVNISS 138 (251)
T ss_pred HHHHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc--CCcEEEEecC
Confidence 0122456899999887543211 11 1234556655 566677777664 3346666664
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.075 Score=52.23 Aligned_cols=70 Identities=29% Similarity=0.398 Sum_probs=41.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEEE
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVI 177 (337)
||+|+||+|.+|..++..|...+.- .+.|..+..+.+ .|....+. ...+.+..-+.++++++|+|+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp----~~~l~~~as~~~----~g~~~~~~------~~~~~~~~~~~~~~~~~D~v~ 66 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFP----IDKLVLLASDRS----AGRKVTFK------GKELEVNEAKIESFEGIDIAL 66 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCC----hhhEEEEecccc----CCCeeeeC------CeeEEEEeCChHHhcCCCEEE
Confidence 6999999999999999998875431 234443322221 11111111 112333322346689999999
Q ss_pred Eecc
Q 019713 178 LIGA 181 (337)
Q Consensus 178 itag 181 (337)
++.|
T Consensus 67 ~a~g 70 (339)
T TIGR01296 67 FSAG 70 (339)
T ss_pred ECCC
Confidence 9764
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.5 Score=43.91 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=62.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ec--Cccc-----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYE----- 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t--~~~e----- 168 (337)
+.+.|+||+|.||.+++..|+..|. .|.+. +++.+.++..+.++.+.. . .++.. .. .+.+
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~-~--~~~~~~~~Dv~~~~~i~~~ 76 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGA-----DVILL----SRNEENLKKAREKIKSES-N--VDVSYIVADLTKREDLERT 76 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhhc-C--CceEEEEecCCCHHHHHHH
Confidence 4689999999999999999998875 25442 344455554444443221 1 11111 00 1111
Q ss_pred -----ccCCCcEEEEecccCCCCC---Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -----LFEDAEWALLIGAKPRGPG---MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -----al~dADvVIitag~prk~g---~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|.+.... .+.. ..+..| ..+.+.+.+.+.+. ..+.||+++-
T Consensus 77 ~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~--~~g~Ii~isS 144 (263)
T PRK08339 77 VKELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERK--GFGRIIYSTS 144 (263)
T ss_pred HHHHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEcC
Confidence 1245799998887653211 1221 223344 44566677777663 3456777764
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.31 Score=45.17 Aligned_cols=104 Identities=20% Similarity=0.225 Sum_probs=56.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch--hhH---HHhHHHhHhhhccCCcccEEEecCccccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQA---LEGVAMELEDSLFPLLREVKIGINPYELF 170 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~--~~~---l~g~a~DL~d~~~~~~~~v~i~t~~~eal 170 (337)
..||.|+|| |.+|..++..|...|+-. ..+. ++|.+.. .++ +.....++.+.. .. ... ..+..+++
T Consensus 25 ~~rvlvlGA-GgAg~aiA~~L~~~G~~~--~~i~--ivdr~gl~~~~r~~~L~~~~~~la~~~-~~-~~~--~~~l~~~l 95 (226)
T cd05311 25 EVKIVINGA-GAAGIAIARLLLAAGAKP--ENIV--VVDSKGVIYEGREDDLNPDKNEIAKET-NP-EKT--GGTLKEAL 95 (226)
T ss_pred CCEEEEECc-hHHHHHHHHHHHHcCcCc--ceEE--EEeCCCccccccchhhhHHHHHHHHHh-cc-Ccc--cCCHHHHH
Confidence 369999995 999999999998877631 0243 4444310 122 222222232211 00 011 12344788
Q ss_pred CCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
+++|++|-+-+ +|+-. .+..+.+. ++.+|+.++||...
T Consensus 96 ~~~dvlIgaT~----~G~~~-----------~~~l~~m~----~~~ivf~lsnP~~e 133 (226)
T cd05311 96 KGADVFIGVSR----PGVVK-----------KEMIKKMA----KDPIVFALANPVPE 133 (226)
T ss_pred hcCCEEEeCCC----CCCCC-----------HHHHHhhC----CCCEEEEeCCCCCc
Confidence 99999887653 34411 12333332 45566778899743
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.068 Score=53.04 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=60.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-------ecCc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-------GINP 166 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-------~t~~ 166 (337)
.++.++.|+||+|++|.+++..|...+.. ..++++|..........+-.++ ....++. ....
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~-----~~irv~D~~~~~~~~~~e~~~~------~~~~v~~~~~D~~~~~~i 70 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELK-----LEIRVVDKTPTQSNLPAELTGF------RSGRVTVILGDLLDANSI 70 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccc-----cEEEEeccCccccccchhhhcc------cCCceeEEecchhhhhhh
Confidence 45679999999999999999999988752 3455555543222222221111 0112221 1234
Q ss_pred ccccCCCcEEEEecc--cCCCCCCchhhhHHhhHHHHHHHHHHHHhh
Q 019713 167 YELFEDAEWALLIGA--KPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (337)
Q Consensus 167 ~eal~dADvVIitag--~prk~g~~R~dll~~N~~I~~~i~~~I~~~ 211 (337)
..++.++ .|+..+. .|+..-..|......|+.--+.+.+.+.+.
T Consensus 71 ~~a~~~~-~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~ 116 (361)
T KOG1430|consen 71 SNAFQGA-VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKEL 116 (361)
T ss_pred hhhccCc-eEEEeccccCccccccchhhheeecchhHHHHHHHHHHh
Confidence 5789999 5655433 333222235555556666656666666664
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.14 Score=48.87 Aligned_cols=86 Identities=19% Similarity=0.151 Sum_probs=51.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCccccc--CCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF--EDA 173 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal--~dA 173 (337)
.+||+|||. |.||..++..|..+... .+.|.-+ .++..++.+..+ +. ..+.+ +.++| .+.
T Consensus 2 ~~rvgiIG~-GaIG~~va~~l~~~~~~----~~~l~~V-~~~~~~~~~~~~----~~-------~~~~~-~l~~ll~~~~ 63 (267)
T PRK13301 2 THRIAFIGL-GAIASDVAAGLLADAAQ----PCQLAAL-TRNAADLPPALA----GR-------VALLD-GLPGLLAWRP 63 (267)
T ss_pred ceEEEEECc-cHHHHHHHHHHhcCCCC----ceEEEEE-ecCCHHHHHHhh----cc-------CcccC-CHHHHhhcCC
Confidence 469999995 99999999998765432 2333332 344444444322 11 11222 33443 789
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCe
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~a 216 (337)
|+||.+++ .+.+++++..+-+. +.|.
T Consensus 64 DlVVE~A~----------------~~av~e~~~~iL~~-g~dl 89 (267)
T PRK13301 64 DLVVEAAG----------------QQAIAEHAEGCLTA-GLDM 89 (267)
T ss_pred CEEEECCC----------------HHHHHHHHHHHHhc-CCCE
Confidence 99999885 35667777666553 3443
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.44 Score=44.12 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..|.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~ 25 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW 25 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC
Confidence 3789999999999999999998775
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.13 Score=50.61 Aligned_cols=67 Identities=15% Similarity=0.059 Sum_probs=41.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
.+.+||+||| .|.+|.++|..|...++ .+.+.+ . ...+....+. . . . +.. .+..+++++|
T Consensus 15 L~gktIgIIG-~GsmG~AlA~~L~~sG~-----~Vvv~~--r--~~~~s~~~A~---~-~-G----~~~-~s~~eaa~~A 74 (330)
T PRK05479 15 IKGKKVAIIG-YGSQGHAHALNLRDSGV-----DVVVGL--R--EGSKSWKKAE---A-D-G----FEV-LTVAEAAKWA 74 (330)
T ss_pred hCCCEEEEEe-eHHHHHHHHHHHHHCCC-----EEEEEE--C--CchhhHHHHH---H-C-C----Cee-CCHHHHHhcC
Confidence 3457899999 59999999999988775 243321 1 1111111111 1 1 1 122 2456889999
Q ss_pred cEEEEec
Q 019713 174 EWALLIG 180 (337)
Q Consensus 174 DvVIita 180 (337)
|+|+++.
T Consensus 75 DVVvLaV 81 (330)
T PRK05479 75 DVIMILL 81 (330)
T ss_pred CEEEEcC
Confidence 9999975
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.055 Score=55.49 Aligned_cols=101 Identities=15% Similarity=0.185 Sum_probs=57.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcc---cccCCCc
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY---ELFEDAE 174 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~---eal~dAD 174 (337)
+|+||| .|.||.++|..|+..+. .|.+ + |++.++++....+.... ..+....+.. +.++++|
T Consensus 1 ~IG~IG-LG~MG~~mA~nL~~~G~-----~V~v--~--drt~~~~~~l~~~~~~g-----~~~~~~~s~~e~v~~l~~~d 65 (467)
T TIGR00873 1 DIGVIG-LAVMGSNLALNMADHGF-----TVSV--Y--NRTPEKTDEFLAEHAKG-----KKIVGAYSIEEFVQSLERPR 65 (467)
T ss_pred CEEEEe-eHHHHHHHHHHHHhcCC-----eEEE--E--eCCHHHHHHHHhhccCC-----CCceecCCHHHHHhhcCCCC
Confidence 489999 69999999999999885 2544 2 55666655432210000 0122222222 2446789
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--CchhH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTN 228 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN--Pvd~~ 228 (337)
+|+++.- ++ +.+.++.+.|..+..++.+||-.+| |-++.
T Consensus 66 vIil~v~----~~-----------~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~ 106 (467)
T TIGR00873 66 KIMLMVK----AG-----------APVDAVINQLLPLLEKGDIIIDGGNSHYPDTE 106 (467)
T ss_pred EEEEECC----Cc-----------HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHH
Confidence 8888741 11 2334444455554456778888887 45543
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.29 Score=44.41 Aligned_cols=26 Identities=31% Similarity=0.183 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~ 31 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA 31 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998764
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.24 Score=52.05 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=59.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-C----------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N---------- 165 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~---------- 165 (337)
|||.|+||+|++|++++..|+...- + ..|.. ++.+...+.++.......+ .+++... |
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~-g--~~V~~--l~R~~~~~~~~~~~~~~~~------~~v~~~~~Dl~~~~~~~~~ 69 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRR-E--ATVHV--LVRRQSLSRLEALAAYWGA------DRVVPLVGDLTEPGLGLSE 69 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCC-C--CEEEE--EECcchHHHHHHHHHhcCC------CcEEEEecccCCccCCcCH
Confidence 4899999999999999999984221 1 12432 2222222222221110000 1122111 1
Q ss_pred -cccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 166 -PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 166 -~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
..+.++++|+||.+++... ......+....|+.-...+.+.+.+. ... .++.+|
T Consensus 70 ~~~~~l~~~D~Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~-~~v~~S 124 (657)
T PRK07201 70 ADIAELGDIDHVVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERL-QAA-TFHHVS 124 (657)
T ss_pred HHHHHhcCCCEEEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhc-CCC-eEEEEe
Confidence 1223478999998887432 12233445667777777777777764 222 445444
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.082 Score=48.93 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++.|+||+|.+|.+++..|+..|.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~ 31 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGA 31 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC
Confidence 5899999999999999999998775
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.24 Score=52.62 Aligned_cols=97 Identities=9% Similarity=0.018 Sum_probs=58.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
.+.|||.|+||+|++|++++..|...+. .+....-++. +.+.+. .++. . .+.
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~-----~v~~~~~~l~-d~~~v~---~~i~------------------~-~~p 429 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGI-----AYEYGKGRLE-DRSSLL---ADIR------------------N-VKP 429 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCC-----eEEeeccccc-cHHHHH---HHHH------------------h-hCC
Confidence 3457999999999999999999987663 1322111110 111111 0011 0 257
Q ss_pred cEEEEecccCCCCCC-----chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEe
Q 019713 174 EWALLIGAKPRGPGM-----ERAGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (337)
Q Consensus 174 DvVIitag~prk~g~-----~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvv 221 (337)
|+||-+|+....+.. +..+....|+.....+++..++. +++++++
T Consensus 430 d~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~---g~~~v~~ 479 (668)
T PLN02260 430 THVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCREN---GLLMMNF 479 (668)
T ss_pred CEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHc---CCeEEEE
Confidence 999988875422211 33456778988888999988885 2344454
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.35 Score=44.22 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++.|+||+|.+|.+++..|+..+.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~ 27 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF 27 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC
Confidence 4789999999999999999998774
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.1 Score=51.01 Aligned_cols=74 Identities=22% Similarity=0.158 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~-~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
...+|+|||+ |..|...+..+.. .++ . .|.++ +++.++++..+.++++.. ..++....+..+++.+|
T Consensus 131 ~~~~v~IiGa-G~~a~~~~~al~~~~~~-~---~V~v~----~R~~~~a~~l~~~~~~~~---g~~v~~~~d~~~al~~a 198 (330)
T PRK08291 131 DASRAAVIGA-GEQARLQLEALTLVRPI-R---EVRVW----ARDAAKAEAYAADLRAEL---GIPVTVARDVHEAVAGA 198 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCC-C---EEEEE----cCCHHHHHHHHHHHhhcc---CceEEEeCCHHHHHccC
Confidence 3469999995 9999987777764 332 2 25542 567778777766665321 12344555556889999
Q ss_pred cEEEEec
Q 019713 174 EWALLIG 180 (337)
Q Consensus 174 DvVIita 180 (337)
|+|+.+-
T Consensus 199 DiVi~aT 205 (330)
T PRK08291 199 DIIVTTT 205 (330)
T ss_pred CEEEEee
Confidence 9998764
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.092 Score=51.71 Aligned_cols=118 Identities=11% Similarity=0.092 Sum_probs=61.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc-cC-CcccEE-----Eec--C
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FP-LLREVK-----IGI--N 165 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~-~~-~~~~v~-----i~t--~ 165 (337)
++++|.|+||+|++|++++..|+..|. .|.+. .+ +.+.++.. .++.... .. ....+. ++. .
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~G~-----~V~~~-~r---~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~ 121 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRHGY-----SVRIA-VD---TQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPES 121 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-----EEEEE-eC---CHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHH
Confidence 356899999999999999999998775 24332 11 22222211 1121100 00 000111 111 1
Q ss_pred cccccCCCcEEEEecccCCCCCC--chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 166 PYELFEDAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 166 ~~eal~dADvVIitag~prk~g~--~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
..++++++|.|+-+++.....+. ....+...|..-...+.+.+.+.++-. ++|.++-
T Consensus 122 l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~SS 180 (367)
T PLN02686 122 LHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTSS 180 (367)
T ss_pred HHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEecc
Confidence 13457889999877664221221 122345567777777777776641122 4555543
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.14 Score=50.50 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++||+|+||+|.+|..++..|.....
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~ 28 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPW 28 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCC
Confidence 47999999999999999998886443
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.57 Score=43.49 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++.|+||+|.+|..++..|+..|.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~ 25 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA 25 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 3799999999999999999998774
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.19 Score=45.15 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|..++..|+..|.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~ 30 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA 30 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 36899999999999999999998775
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.095 Score=50.61 Aligned_cols=25 Identities=16% Similarity=0.014 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+||.|+||+|+||++++..|+..|.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~ 25 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY 25 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC
Confidence 4899999999999999999998764
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.19 Score=45.54 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~~Gv 45 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAGAGV 45 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCC
Confidence 369999995 9999999999999987
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.028 Score=51.99 Aligned_cols=68 Identities=21% Similarity=0.247 Sum_probs=41.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-Cc-----cccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NP-----YELF 170 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~~-----~eal 170 (337)
|+|+|+|+ |.+|+++|..|...|. .+.+ +|.++++++...-|-.+ ..+.... .+ ...+
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~-----~Vv~----Id~d~~~~~~~~~~~~~------~~~v~gd~t~~~~L~~agi 64 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH-----NVVL----IDRDEERVEEFLADELD------THVVIGDATDEDVLEEAGI 64 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC-----ceEE----EEcCHHHHHHHhhhhcc------eEEEEecCCCHHHHHhcCC
Confidence 68999995 9999999999998875 2554 35555555432211111 1222221 11 2347
Q ss_pred CCCcEEEEec
Q 019713 171 EDAEWALLIG 180 (337)
Q Consensus 171 ~dADvVIita 180 (337)
.++|.+|.+-
T Consensus 65 ~~aD~vva~t 74 (225)
T COG0569 65 DDADAVVAAT 74 (225)
T ss_pred CcCCEEEEee
Confidence 8899988753
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.26 Score=49.42 Aligned_cols=76 Identities=13% Similarity=0.243 Sum_probs=48.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHH--------HhHh----hhccCCcccEEEe
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA--------MELE----DSLFPLLREVKIG 163 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a--------~DL~----d~~~~~~~~v~i~ 163 (337)
.++|+||| .|.||--+|-.++..|.- + + +.|.++.+.+.+- -|+. ... -..+++.+
T Consensus 9 ~~~I~ViG-LGYVGLPlA~~fA~~G~~-----V-i---G~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v--~~g~lraT 76 (436)
T COG0677 9 SATIGVIG-LGYVGLPLAAAFASAGFK-----V-I---GVDINQKKVDKLNRGESYIEEPDLDEVVKEAV--ESGKLRAT 76 (436)
T ss_pred ceEEEEEc-cccccHHHHHHHHHcCCc-----e-E---eEeCCHHHHHHHhCCcceeecCcHHHHHHHHH--hcCCceEe
Confidence 37999999 799999999999998861 2 1 2344444433210 0011 111 11356666
Q ss_pred cCcccccCCCcEEEEecccCC
Q 019713 164 INPYELFEDAEWALLIGAKPR 184 (337)
Q Consensus 164 t~~~eal~dADvVIitag~pr 184 (337)
+ +.+.++.||++|++.-.|-
T Consensus 77 t-d~~~l~~~dv~iI~VPTPl 96 (436)
T COG0677 77 T-DPEELKECDVFIICVPTPL 96 (436)
T ss_pred c-ChhhcccCCEEEEEecCCc
Confidence 5 5678899999999976664
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.1 Score=50.46 Aligned_cols=103 Identities=17% Similarity=0.319 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..+|+.|| .|.+|++++..|+..|. .|..+ |++.++.+ ++++.. .++...+.|..+++|+
T Consensus 35 ~~~iGFIG-LG~MG~~M~~nLik~G~-----kVtV~----dr~~~k~~----~f~~~G------a~v~~sPaeVae~sDv 94 (327)
T KOG0409|consen 35 KTRIGFIG-LGNMGSAMVSNLIKAGY-----KVTVY----DRTKDKCK----EFQEAG------ARVANSPAEVAEDSDV 94 (327)
T ss_pred cceeeEEe-eccchHHHHHHHHHcCC-----EEEEE----eCcHHHHH----HHHHhc------hhhhCCHHHHHhhcCE
Confidence 46999999 79999999999999887 36553 34444443 344432 1233456788999999
Q ss_pred EEEecccCC----------------CCCCch-hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEe
Q 019713 176 ALLIGAKPR----------------GPGMER-AGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (337)
Q Consensus 176 VIitag~pr----------------k~g~~R-~dll~~N~~I~~~i~~~I~~~a~p~aivIvv 221 (337)
||...+.|. .+|..- .|.-...-...+++.+.+.. .++++|=+
T Consensus 95 vitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~---~~~~~vDA 154 (327)
T KOG0409|consen 95 VITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISN---KGGRFVDA 154 (327)
T ss_pred EEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHh---CCCeEEec
Confidence 998754432 122222 34444556678888888876 35665433
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.14 Score=46.67 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+.+||.|||| |.||...+..|...+.
T Consensus 9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga 34 (202)
T PRK06718 9 SNKRVVIVGG-GKVAGRRAITLLKYGA 34 (202)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC
Confidence 3469999996 9999999999888773
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.11 Score=47.89 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gv 45 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGV 45 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 369999995 9999999999999997
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.47 Score=43.56 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..+.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~ 26 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA 26 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC
Confidence 5799999999999999999988774
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.11 Score=50.24 Aligned_cols=107 Identities=15% Similarity=0.131 Sum_probs=55.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC-cccEEEec--CcccccC--
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGI--NPYELFE-- 171 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~t--~~~eal~-- 171 (337)
|||.|+||+|+||++++..|+..+.. .+. .++........+.. .++.... .. .....++. +..++++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~----~v~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~Dl~d~~~~~~~~~~~ 72 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQD----SVV--NVDKLTYAGNLESL-ADVSDSE-RYVFEHADICDRAELDRIFAQH 72 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCC----eEE--EecCCCccchHHHH-HhcccCC-ceEEEEecCCCHHHHHHHHHhc
Confidence 58999999999999999999886641 122 12210000111100 0111000 00 00011111 1123343
Q ss_pred CCcEEEEecccCCC--CCCchhhhHHhhHHHHHHHHHHHHhh
Q 019713 172 DAEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAV 211 (337)
Q Consensus 172 dADvVIitag~prk--~g~~R~dll~~N~~I~~~i~~~I~~~ 211 (337)
+.|+||.+++.... ......+....|+.-...+.+.+.++
T Consensus 73 ~~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~ 114 (352)
T PRK10084 73 QPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNY 114 (352)
T ss_pred CCCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHh
Confidence 47999998875421 11223456788888888888777653
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.52 Score=43.08 Aligned_cols=112 Identities=18% Similarity=0.074 Sum_probs=62.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY------ 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~------ 167 (337)
+++.|+||+|.+|.+++..|+..|. .|.+ . +++.+.++....++.+.. .++.. ..| +.
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~-----~v~~--~--~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~ 73 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGA-----KVVV--G--ARRQAELDQLVAEIRAEG----GEAVALAGDVRDEAYAKAL 73 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHHH
Confidence 5899999999999999999998775 2443 2 344555555444444321 11111 111 11
Q ss_pred -----cccCCCcEEEEecccC--CCCC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 -----ELFEDAEWALLIGAKP--RGPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 -----eal~dADvVIitag~p--rk~g--~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|.. ..+- .+. ...+..|.. ..+...+.+.+. ..+.||+++.
T Consensus 74 ~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~--~~~~iv~~sS 143 (254)
T PRK07478 74 VALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR--GGGSLIFTST 143 (254)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 1233679999988752 2221 122 223555643 445555666553 3456666654
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.15 Score=46.72 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+|.|+||+|.+|.+++..|+..|.
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~ 31 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGA 31 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC
Confidence 5799999999999999999998875
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.13 Score=54.62 Aligned_cols=117 Identities=20% Similarity=0.098 Sum_probs=61.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--cc---c
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY---E 168 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~---e 168 (337)
+++||.|+||+|+||++++..|...+.- -.|. .+|.....+.+.. +.... . ..++... .| +. .
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~---~~V~--~~d~~~~~~~~~~----l~~~~-~-~~~v~~~~~Dl~d~~~~~ 73 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPD---YKIV--VLDKLDYCSNLKN----LNPSK-S-SPNFKFVKGDIASADLVN 73 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCC---CEEE--EEeCCCccchhhh----hhhcc-c-CCCeEEEECCCCChHHHH
Confidence 3579999999999999999999876321 0132 2222110111111 11000 0 0112211 11 11 1
Q ss_pred -c--cCCCcEEEEecccCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -L--FEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -a--l~dADvVIitag~prk~g--~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
. ..+.|+||-+|+...... ....+....|+.-...+.+.+++. +.-.++|.+|-
T Consensus 74 ~~~~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~vkr~I~~SS 132 (668)
T PLN02260 74 YLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVT-GQIRRFIHVST 132 (668)
T ss_pred HHHhhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEEcc
Confidence 1 257999999887543111 122345677877777788877775 32235666663
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.24 Score=45.32 Aligned_cols=46 Identities=24% Similarity=0.144 Sum_probs=32.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
.+++.|+||+|.+|.+++..|+..|. .+.+ . +++.++++....++.
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~-----~vvl--~--~r~~~~~~~~~~~l~ 54 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGA-----EIII--N--DITAERAELAVAKLR 54 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC-----EEEE--E--cCCHHHHHHHHHHHH
Confidence 45899999999999999999998774 2444 2 444455554444444
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.42 Score=45.32 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=60.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e---- 168 (337)
.++|.|+||+|.||.+++..|+..|. .|.+. .++.++++....++.... + ..++... .| +.+
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~-----~vi~~----~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~Dl~d~~~v~~ 84 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGA-----HVVLA----VRNLDKGKAAAARITAAT-P-GADVTLQELDLTSLASVRA 84 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHHhC-C-CCceEEEECCCCCHHHHHH
Confidence 36899999999999999999998774 24442 334344433333333211 0 0112111 11 111
Q ss_pred -------ccCCCcEEEEecccCCCCC-Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -------LFEDAEWALLIGAKPRGPG-MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -------al~dADvVIitag~prk~g-~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|....+. .+. ...+..|. .+.+.+.+.+.+. ..+.||+++-
T Consensus 85 ~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~--~~~~iV~vSS 152 (306)
T PRK06197 85 AADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV--PGSRVVTVSS 152 (306)
T ss_pred HHHHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC--CCCEEEEECC
Confidence 2346899999887422111 111 12244443 3356666666653 3456777664
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.62 Score=42.51 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~ 29 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA 29 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 35899999999999999999998775
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.27 Score=41.58 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
||.|+|+ |.+|+.++..|+..|+
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv 23 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV 23 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC
Confidence 6899995 9999999999999998
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.33 Score=44.22 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~ 29 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG 29 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.28 Score=44.95 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+..||+|||+ |.+|+.++..|+..|+
T Consensus 27 ~~~~V~ViG~-GglGs~ia~~La~~Gv 52 (212)
T PRK08644 27 KKAKVGIAGA-GGLGSNIAVALARSGV 52 (212)
T ss_pred hCCCEEEECc-CHHHHHHHHHHHHcCC
Confidence 3469999995 9999999999999987
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.11 Score=52.44 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=61.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+..+|+|+|+ |.+|..++..|...|.. .|.+ .+++.+++...+.++. ..+....+..+.+.++|
T Consensus 181 ~~~~vlViGa-G~iG~~~a~~L~~~G~~----~V~v----~~r~~~ra~~la~~~g-------~~~~~~~~~~~~l~~aD 244 (423)
T PRK00045 181 SGKKVLVIGA-GEMGELVAKHLAEKGVR----KITV----ANRTLERAEELAEEFG-------GEAIPLDELPEALAEAD 244 (423)
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHCCCC----eEEE----EeCCHHHHHHHHHHcC-------CcEeeHHHHHHHhccCC
Confidence 4479999995 99999999998876642 2443 2555566554443322 11111123456788999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t 229 (337)
+||.+.+.|. +-. +...++.. +..-.....++|-+++|-|+=.
T Consensus 245 vVI~aT~s~~-~~i--------~~~~l~~~---~~~~~~~~~vviDla~Prdid~ 287 (423)
T PRK00045 245 IVISSTGAPH-PII--------GKGMVERA---LKARRHRPLLLVDLAVPRDIEP 287 (423)
T ss_pred EEEECCCCCC-cEE--------cHHHHHHH---HhhccCCCeEEEEeCCCCCCcc
Confidence 9998765542 101 11112221 1111024568899999987643
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.096 Score=50.63 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=54.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-----Eec--Cccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-----IGI--NPYE 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-----i~t--~~~e 168 (337)
|+||.|+||+|+||++++..|...+.- .+.+ .+.......+. .+.+.. + ..++. ++. +..+
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~----~v~~--~~~~~~~~~~~----~~~~~~-~-~~~~~~~~~Dl~d~~~~~~ 68 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSD----AVVV--VDKLTYAGNLM----SLAPVA-Q-SERFAFEKVDICDRAELAR 68 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCC----EEEE--EecCccccchh----hhhhcc-c-CCceEEEECCCcChHHHHH
Confidence 468999999999999999999987641 1222 22111111111 111100 0 00111 111 1123
Q ss_pred ccC--CCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHh
Q 019713 169 LFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNA 210 (337)
Q Consensus 169 al~--dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~ 210 (337)
.++ +.|+||.++|..... ..........|..-...+.+.+.+
T Consensus 69 ~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~ 114 (355)
T PRK10217 69 VFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARA 114 (355)
T ss_pred HHhhcCCCEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHH
Confidence 344 389999988754211 112344667787777777777665
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.063 Score=51.73 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|++|++++..|+..|.
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~ 31 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGY 31 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCC
Confidence 46899999999999999999998775
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.12 Score=50.79 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=22.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.||.|||+ |.+|+.+|..|+..|+
T Consensus 25 ~~VlIiG~-GglGs~va~~La~aGv 48 (338)
T PRK12475 25 KHVLIVGA-GALGAANAEALVRAGI 48 (338)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC
Confidence 58999995 9999999999999987
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.64 Score=41.82 Aligned_cols=26 Identities=27% Similarity=0.171 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++|.|+||+|.+|..++..|+..+.
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~ 30 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA 30 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 35899999999999999999988764
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.12 Score=47.18 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+|.|+||+|.+|.+++..|+..|.
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~ 26 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW 26 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC
Confidence 5799999999999999999998765
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.33 Score=44.91 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.||.+++..|+..|.
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~ 35 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGA 35 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.23 Score=46.06 Aligned_cols=114 Identities=14% Similarity=-0.031 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec---------Cc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NP 166 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t---------~~ 166 (337)
.++|.|+||+|.+|.+++..|+..|. .+.+. +++.++++....++.... . ....++. .-
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~~~~~-~--~~~D~~~~~~~~~~~~~~ 72 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA-----RVAIG----DLDEALAKETAAELGLVV-G--GPLDVTDPASFAAFLDAV 72 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHhccce-E--EEccCCCHHHHHHHHHHH
Confidence 35899999999999999999998775 24432 344555544333332110 0 0011110 00
Q ss_pred ccccCCCcEEEEecccCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 YELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 ~eal~dADvVIitag~prk~g---~~---R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+.+.|++|..+|...... .+ -...+..|.. +.+.+.+.+.+. ..+.|++++-
T Consensus 73 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~--~~g~iv~isS 137 (273)
T PRK07825 73 EADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR--GRGHVVNVAS 137 (273)
T ss_pred HHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEEEcC
Confidence 122357899999887542111 11 1123445543 445555666553 3456677763
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.49 Score=42.69 Aligned_cols=26 Identities=31% Similarity=0.241 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~ 31 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA 31 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC
Confidence 46899999999999999999998774
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.55 Score=43.01 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+|.|+||+|.+|.+++..|+..+.
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~ 27 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY 27 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC
Confidence 4699999999999999999998774
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.17 Score=49.81 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=21.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+||+|+||+|.+|..++..|.....
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~ 25 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE 25 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC
Confidence 5899999999999999999886543
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.32 Score=46.56 Aligned_cols=26 Identities=15% Similarity=0.048 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.||.+++..|+..|.
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~ 31 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGW 31 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCC
Confidence 45799999999999999999998774
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.51 Score=43.39 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=31.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
|+|.|+||+|.+|.+++..|+..|. .|.+ . +++++.++....++.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~l~ 45 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA-----RVVI--S--SRNEENLEKALKELK 45 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC-----EEEE--E--eCCHHHHHHHHHHHH
Confidence 5899999999999999999998875 2443 2 445555554444444
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.15 Score=51.40 Aligned_cols=73 Identities=25% Similarity=0.271 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+..||.|||| |.||.-+|..|...++. .|.+ ..+..++++..+-++. ..+....+..+.+.++|
T Consensus 177 ~~~~vlvIGA-Gem~~lva~~L~~~g~~----~i~I----aNRT~erA~~La~~~~-------~~~~~l~el~~~l~~~D 240 (414)
T COG0373 177 KDKKVLVIGA-GEMGELVAKHLAEKGVK----KITI----ANRTLERAEELAKKLG-------AEAVALEELLEALAEAD 240 (414)
T ss_pred ccCeEEEEcc-cHHHHHHHHHHHhCCCC----EEEE----EcCCHHHHHHHHHHhC-------CeeecHHHHHHhhhhCC
Confidence 4468999995 99999999999999984 2444 3667777766655544 12222245578899999
Q ss_pred EEEEecccC
Q 019713 175 WALLIGAKP 183 (337)
Q Consensus 175 vVIitag~p 183 (337)
+||.+-|.|
T Consensus 241 vVissTsa~ 249 (414)
T COG0373 241 VVISSTSAP 249 (414)
T ss_pred EEEEecCCC
Confidence 999876555
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.12 Score=50.36 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=47.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..+|+|||+ |.+|...+..++...-+. .|.+ + +++.++++..+.++.+.. + .++....+..+++.++|+
T Consensus 127 ~~~v~iiGa-G~~a~~~~~al~~~~~~~---~v~v--~--~r~~~~a~~~~~~~~~~~-~--~~~~~~~~~~~~~~~aDi 195 (325)
T PRK08618 127 AKTLCLIGT-GGQAKGQLEAVLAVRDIE---RVRV--Y--SRTFEKAYAFAQEIQSKF-N--TEIYVVNSADEAIEEADI 195 (325)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhcCCcc---EEEE--E--CCCHHHHHHHHHHHHHhc-C--CcEEEeCCHHHHHhcCCE
Confidence 578999995 999988776665322222 2444 2 566677776666665321 1 234445555678999999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
|+.+-
T Consensus 196 Vi~aT 200 (325)
T PRK08618 196 IVTVT 200 (325)
T ss_pred EEEcc
Confidence 98763
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.44 Score=45.23 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++.|+||+|.||.+++..|+..|.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~ 74 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGA 74 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC
Confidence 5899999999999999999998875
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.83 Score=41.54 Aligned_cols=48 Identities=31% Similarity=0.308 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhh
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d 151 (337)
+.++|.|+||+|.+|.+++..|+..+. .|.+ + +++.+.++....++.+
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~-----~Vi~--~--~r~~~~~~~~~~~l~~ 58 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGA-----TVIL--L--GRTEEKLEAVYDEIEA 58 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-----cEEE--E--eCCHHHHHHHHHHHHh
Confidence 456899999999999999999998764 2443 2 4444555555455543
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.13 Score=49.83 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~-~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
...+|+||| +|.+|...+..+.. .+. . .|.+ .+++.++++..+.++.+. . .++....+..+++++|
T Consensus 124 ~~~~v~iiG-~G~~a~~~~~al~~~~~~-~---~V~V----~~Rs~~~a~~~a~~~~~~--g--~~~~~~~~~~~av~~a 190 (314)
T PRK06141 124 DASRLLVVG-TGRLASLLALAHASVRPI-K---QVRV----WGRDPAKAEALAAELRAQ--G--FDAEVVTDLEAAVRQA 190 (314)
T ss_pred CCceEEEEC-CcHHHHHHHHHHHhcCCC-C---EEEE----EcCCHHHHHHHHHHHHhc--C--CceEEeCCHHHHHhcC
Confidence 357999999 59999999876654 342 1 2544 256777777777666532 1 1345555566789999
Q ss_pred cEEEEec
Q 019713 174 EWALLIG 180 (337)
Q Consensus 174 DvVIita 180 (337)
|+|+.+-
T Consensus 191 DIVi~aT 197 (314)
T PRK06141 191 DIISCAT 197 (314)
T ss_pred CEEEEee
Confidence 9986643
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.069 Score=51.42 Aligned_cols=75 Identities=24% Similarity=0.229 Sum_probs=45.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+.+||+|+||+|+||||++-.|...+. + .|++ |-. -.|....++++......++........-+..+|
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~egh--~--VIa~-----Dn~---ftg~k~n~~~~~~~~~fel~~hdv~~pl~~evD 93 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEGH--E--VIAL-----DNY---FTGRKENLEHWIGHPNFELIRHDVVEPLLKEVD 93 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcCC--e--EEEE-----ecc---cccchhhcchhccCcceeEEEeechhHHHHHhh
Confidence 458999999999999999999988773 2 2333 211 112223344443222223333333345788999
Q ss_pred EEEEecc
Q 019713 175 WALLIGA 181 (337)
Q Consensus 175 vVIitag 181 (337)
-|+-.|.
T Consensus 94 ~IyhLAa 100 (350)
T KOG1429|consen 94 QIYHLAA 100 (350)
T ss_pred hhhhhcc
Confidence 9986654
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.082 Score=48.55 Aligned_cols=26 Identities=27% Similarity=-0.005 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~ 35 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGW 35 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCC
Confidence 35799999999999999999998764
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.14 Score=49.41 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
...+++||| +|..|..-+..++.-.-+. .|.+ + +++.++++..+.++.+.. ..++.+..+..+++++||
T Consensus 116 da~~l~iiG-aG~QA~~~~~a~~~v~~i~---~v~v--~--~r~~~~a~~f~~~~~~~~---~~~v~~~~~~~eav~~aD 184 (301)
T PRK06407 116 NVENFTIIG-SGFQAETQLEGMASVYNPK---RIRV--Y--SRNFDHARAFAERFSKEF---GVDIRPVDNAEAALRDAD 184 (301)
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHhcCCCC---EEEE--E--CCCHHHHHHHHHHHHHhc---CCcEEEeCCHHHHHhcCC
Confidence 357999999 5999987776665532222 2544 3 567778887777776532 235666667789999999
Q ss_pred EEEEe
Q 019713 175 WALLI 179 (337)
Q Consensus 175 vVIit 179 (337)
+|+.+
T Consensus 185 IV~ta 189 (301)
T PRK06407 185 TITSI 189 (301)
T ss_pred EEEEe
Confidence 99864
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.6 Score=42.83 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..|.
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~ 33 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGA 33 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998765
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.17 Score=50.46 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAG 119 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~ 119 (337)
-..||+|||.+|.||.+++..|...
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~ 27 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTR 27 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhc
Confidence 3469999995599999999999764
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.47 Score=43.38 Aligned_cols=26 Identities=23% Similarity=0.106 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|..++..|+..|.
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~ 35 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA 35 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC
Confidence 36899999999999999999998775
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.45 Score=43.36 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.||.+++..|+..|.
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~ 30 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA 30 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC
Confidence 35899999999999999999998875
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.99 Score=42.48 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAG 119 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~ 119 (337)
|+||+|+|++|.||..++..+...
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~ 24 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA 24 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC
Confidence 479999996699999999877654
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.13 Score=48.12 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++|.|+||+|.+|.+++..|+..|.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~ 29 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW 29 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 45799999999999999999988764
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.16 Score=49.60 Aligned_cols=74 Identities=22% Similarity=0.243 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~-~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
...+++|||+ |..|...+..|+. .++ . .|.+ .+++.++++..+.++.+.. ..++....+..+++.+|
T Consensus 128 ~~~~v~iiGa-G~qA~~~~~al~~~~~i-~---~v~V----~~R~~~~a~~~a~~~~~~~---g~~v~~~~~~~~av~~a 195 (326)
T TIGR02992 128 DSSVVAIFGA-GMQARLQLEALTLVRDI-R---SARI----WARDSAKAEALALQLSSLL---GIDVTAATDPRAAMSGA 195 (326)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHhCCc-c---EEEE----ECCCHHHHHHHHHHHHhhc---CceEEEeCCHHHHhccC
Confidence 3568999995 9999998888864 433 2 2444 2567777777766665321 12344455567789999
Q ss_pred cEEEEec
Q 019713 174 EWALLIG 180 (337)
Q Consensus 174 DvVIita 180 (337)
|+|+.+-
T Consensus 196 DiVvtaT 202 (326)
T TIGR02992 196 DIIVTTT 202 (326)
T ss_pred CEEEEec
Confidence 9998763
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.79 Score=41.54 Aligned_cols=26 Identities=19% Similarity=0.008 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|++++..|+..|.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~ 30 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGA 30 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998764
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.22 Score=44.33 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAG 119 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~ 119 (337)
+++|.|+||+|.+|..++..|+..
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~ 26 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT 26 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh
Confidence 468999999999999999999876
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.17 Score=47.03 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|++++..|+..+.
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~ 27 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD 27 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC
Confidence 4799999999999999999998774
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.26 Score=47.97 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=40.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.+||+|||+ |++|.+++..|...++ .+.+.+ +...+.++. +.+. .+... +..+++++||+
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG~-----~Viv~~---~~~~~~~~~----a~~~------Gv~~~-s~~ea~~~ADi 62 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSGL-----NVIVGL---RKGGASWKK----ATED------GFKVG-TVEEAIPQADL 62 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCCC-----eEEEEE---CcChhhHHH----HHHC------CCEEC-CHHHHHhcCCE
Confidence 368999994 9999999999988775 133221 222222221 1111 12222 35677899999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
|+++.
T Consensus 63 VvLaV 67 (314)
T TIGR00465 63 IMNLL 67 (314)
T ss_pred EEEeC
Confidence 99985
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.15 Score=53.03 Aligned_cols=106 Identities=17% Similarity=0.167 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..||+|||| |.+|..++..|...|.- .|.+ .+++.++++..+.++... ...+....+..+.+.++|+
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G~~----~V~V----~nRs~era~~La~~~~g~----~i~~~~~~dl~~al~~aDV 332 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKGCT----KMVV----VNRSEERVAALREEFPDV----EIIYKPLDEMLACAAEADV 332 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCCCC----eEEE----EeCCHHHHHHHHHHhCCC----ceEeecHhhHHHHHhcCCE
Confidence 469999995 99999999999877642 2444 356666666554333210 0011112344578899999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhh----cCCCeEEEEeCCCchhH
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV----ASRNVKVIVVGNPCNTN 228 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~----a~p~aivIvvtNPvd~~ 228 (337)
||.+-+.+. | -+.++..+.+.+. ..| -.+|-++.|-|+=
T Consensus 333 VIsAT~s~~-p------------vI~~e~l~~~~~~~~~~~~~-~~~IDLAvPRdId 375 (519)
T PLN00203 333 VFTSTSSET-P------------LFLKEHVEALPPASDTVGGK-RLFVDISVPRNVG 375 (519)
T ss_pred EEEccCCCC-C------------eeCHHHHHHhhhcccccCCC-eEEEEeCCCCCCc
Confidence 987644332 1 1223333333211 122 3678899997664
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.87 Score=41.91 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..+|.|+||+|.+|..++..|+..|.
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~ 30 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA 30 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.9 Score=41.36 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..|.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~ 27 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH 27 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 4799999999999999999998774
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.33 Score=39.89 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
||+|+|++|.+|..++..|....
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~ 23 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHP 23 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCC
Confidence 68999988999999988887754
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.51 Score=43.07 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|..++..|+..+.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~ 32 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA 32 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC
Confidence 46899999999999999999998764
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.17 Score=47.09 Aligned_cols=26 Identities=27% Similarity=0.156 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~ 28 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY 28 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 35899999999999999999988764
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.26 Score=48.12 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++||+|+||+|.+|..+...|.....
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~ 27 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSD 27 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCC
Confidence 57999999999999999999988764
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.16 Score=50.00 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||.|||| |.+|+.++..|+..|+
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGv 48 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGV 48 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 468999995 9999999999999987
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.7 Score=41.74 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~ 32 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV 32 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC
Confidence 35799999999999999999988775
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.21 Score=46.81 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||+|||+ |.+|+.++..|+..|+
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gv 56 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGV 56 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCC
Confidence 369999995 9999999999999987
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.72 Score=42.66 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
+.++|.|+||+|.+|.+++..|+..+
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~g 32 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNA 32 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcC
Confidence 34689999999999999999998764
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=94.27 E-value=1.2 Score=40.00 Aligned_cols=27 Identities=26% Similarity=0.172 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+.++|.|+||+|.+|.+++..|+..|.
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G~ 30 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGA 30 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC
Confidence 346899999999999999999998775
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.57 Score=42.59 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++.|+||+|.+|.+++..|+..+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~ 25 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF 25 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC
Confidence 689999999999999999998775
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.82 Score=43.40 Aligned_cols=45 Identities=20% Similarity=0.218 Sum_probs=32.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.
T Consensus 41 k~vlItGasggIG~~la~~La~~G~-----~Vi~----~~R~~~~l~~~~~~l~ 85 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGA-----TVVA----VARREDLLDAVADRIT 85 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHH
Confidence 5899999999999999999998774 2443 2455566655444443
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.63 Score=49.92 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
+.+||+||| .|.||.+++..|...|
T Consensus 368 ~~~kIgIIG-lG~mG~slA~~L~~~G 392 (667)
T PLN02712 368 SKLKIAIVG-FGNFGQFLAKTMVKQG 392 (667)
T ss_pred CCCEEEEEe-cCHHHHHHHHHHHHCc
Confidence 557999999 5999999999998765
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.2 Score=45.25 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~ 31 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGA 31 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998774
|
|
| >COG5322 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.11 Score=49.63 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=78.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
..|+|+||.|.||+.++..|+...- .++|.+-|. ++...+.+.+.+. ++.+.+..+ .++ ++-++|++
T Consensus 168 atvaivGa~G~Ia~~Iar~la~~~~-----~~~ll~r~a----ea~~rq~l~~l~e--~~~~~~i~s-~d~-~~~~e~i~ 234 (351)
T COG5322 168 ATVAIVGATGDIASAIARWLAPKVG-----VKELLLRDA----EARNRQRLTLLQE--ELGRGKIMS-LDY-ALPQEDIL 234 (351)
T ss_pred CeEEEecCCchHHHHHHHHhccccC-----EEEEecccH----Hhhhhhhhhhccc--ccCCCeeee-ccc-cccccceE
Confidence 5899999999999999999976543 245543332 2333333333322 444454443 344 45667777
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEEecCchhHHHHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAK 256 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~LDs~R~~ 256 (337)
|..+..|.. ..|+-+ +-.|.++|+-.+-|-|+-+++ |+-+++ ++|-.|-.-.+.-+.
T Consensus 235 v~vAs~~~g------------~~I~pq-------~lkpg~~ivD~g~P~dvd~~v--k~~~~V--~Ii~GGlV~~s~~it 291 (351)
T COG5322 235 VWVASMPKG------------VEIFPQ-------HLKPGCLIVDGGYPKDVDTSV--KNVGGV--RIIPGGLVEHSLDIT 291 (351)
T ss_pred EEEeecCCC------------ceechh-------hccCCeEEEcCCcCccccccc--ccCCCe--EEecCccccCccccc
Confidence 777665532 222221 125888888888898887765 322222 566333222244445
Q ss_pred HHHHHHhCCCccccc
Q 019713 257 CQLALKAGVFYDKVS 271 (337)
Q Consensus 257 ~~lA~~lgv~~~~V~ 271 (337)
+-+-+..+.+...+.
T Consensus 292 ~gi~~~~~~p~~~l~ 306 (351)
T COG5322 292 WGIMKIVGMPVRQLF 306 (351)
T ss_pred hhHHHHcccchhhHH
Confidence 555555555444444
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.26 Score=44.82 Aligned_cols=88 Identities=14% Similarity=0.084 Sum_probs=49.0
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC----cccccCCC
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN----PYELFEDA 173 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~----~~eal~dA 173 (337)
|+|+||+|.+|++++..|...+. .|..... +.+.+.++ .+++.. ..+.. .-+ ..++|+|+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-----~V~~l~R--~~~~~~~~----~l~~~g----~~vv~~d~~~~~~l~~al~g~ 65 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-----SVRALVR--DPSSDRAQ----QLQALG----AEVVEADYDDPESLVAALKGV 65 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-----CEEEEES--SSHHHHHH----HHHHTT----TEEEES-TT-HHHHHHHHTTC
T ss_pred CEEECCccHHHHHHHHHHHhCCC-----CcEEEEe--ccchhhhh----hhhccc----ceEeecccCCHHHHHHHHcCC
Confidence 78999999999999999999553 3544322 22222222 123221 11211 111 24679999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhh
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~ 211 (337)
|.|+++-+... .. -.+..+.++++..+.
T Consensus 66 d~v~~~~~~~~---~~-------~~~~~~~li~Aa~~a 93 (233)
T PF05368_consen 66 DAVFSVTPPSH---PS-------ELEQQKNLIDAAKAA 93 (233)
T ss_dssp SEEEEESSCSC---CC-------HHHHHHHHHHHHHHH
T ss_pred ceEEeecCcch---hh-------hhhhhhhHHHhhhcc
Confidence 99998754322 11 134445566666664
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.34 Score=47.59 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
|+||+|+||+|.+|..++..|....
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p 26 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHP 26 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCC
Confidence 5799999999999999999887654
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=1 Score=41.13 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=31.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
+++.|+||+|.+|.+++..|+..|. .|.+. +++.+.++..+.++.
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~l~ 54 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGA-----QVAIA----ARHLDALEKLADEIG 54 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----cCCHHHHHHHHHHHH
Confidence 5799999999999999999998775 24442 344455554444443
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.54 Score=43.18 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++|.|+||+|.+|.+++..|+..|.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~ 27 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA 27 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC
Confidence 35899999999999999999998764
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.16 Score=49.38 Aligned_cols=72 Identities=26% Similarity=0.217 Sum_probs=47.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~-~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
...+++||| +|..|..-+..+.. .+ +. .|.+ + +++.++++..+.++++ . ...+....+..+++++|
T Consensus 127 ~~~~l~viG-aG~QA~~~~~a~~~~~~-i~---~v~v--~--~r~~~~~~~~~~~~~~-~---~~~v~~~~~~~~av~~a 193 (313)
T PF02423_consen 127 DARTLGVIG-AGVQARWHLRALAAVRP-IK---EVRV--Y--SRSPERAEAFAARLRD-L---GVPVVAVDSAEEAVRGA 193 (313)
T ss_dssp T--EEEEE---SHHHHHHHHHHHHHS---S---EEEE--E---SSHHHHHHHHHHHHC-C---CTCEEEESSHHHHHTTS
T ss_pred CCceEEEEC-CCHHHHHHHHHHHHhCC-ce---EEEE--E--ccChhHHHHHHHhhcc-c---cccceeccchhhhcccC
Confidence 357999999 59999887766653 34 32 3554 2 5677888888777776 2 34677777778999999
Q ss_pred cEEEEe
Q 019713 174 EWALLI 179 (337)
Q Consensus 174 DvVIit 179 (337)
|+|+.+
T Consensus 194 Dii~ta 199 (313)
T PF02423_consen 194 DIIVTA 199 (313)
T ss_dssp SEEEE-
T ss_pred CEEEEc
Confidence 998864
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=1.4 Score=40.35 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+|.|+||+|.||.+++..|+..|.
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~ 27 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGF 27 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC
Confidence 4799999999999999999998775
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.13 Score=56.51 Aligned_cols=103 Identities=17% Similarity=0.080 Sum_probs=57.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec--CcccccCCCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFEDAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t--~~~eal~dAD 174 (337)
|||.|+||+|++|++++..|+..+. .|.. + +++.... +.... .+ ....+.. +..+.++++|
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~-----~Vv~--l--~R~~~~~------~~~~v-~~-v~gDL~D~~~l~~al~~vD 63 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH-----EVVG--I--ARHRPDS------WPSSA-DF-IAADIRDATAVESAMTGAD 63 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-----EEEE--E--ECCchhh------cccCc-eE-EEeeCCCHHHHHHHHhCCC
Confidence 5899999999999999999988764 2433 2 2221110 00000 00 0011111 1234578899
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
+||.+++... + ....|..-...+.+.+.+. +. ..+|++|.+.
T Consensus 64 ~VVHlAa~~~-~------~~~vNv~GT~nLLeAa~~~-gv-kr~V~iSS~~ 105 (854)
T PRK05865 64 VVAHCAWVRG-R------NDHINIDGTANVLKAMAET-GT-GRIVFTSSGH 105 (854)
T ss_pred EEEECCCccc-c------hHHHHHHHHHHHHHHHHHc-CC-CeEEEECCcH
Confidence 9999886432 1 2355666666666666664 22 2566666653
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=1.4 Score=40.24 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+.++|.|+||+|.+|.+++..|+..+.
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~ 36 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA 36 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 447999999999999999999998775
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=1.3 Score=40.56 Aligned_cols=25 Identities=8% Similarity=0.202 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++.|+||+|.+|.+++..|+..|.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~ 26 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA 26 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC
Confidence 4789999999999999999998775
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=1.1 Score=40.40 Aligned_cols=44 Identities=25% Similarity=0.295 Sum_probs=31.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhH
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL 149 (337)
++|.|+||+|.+|.+++..|+..+. .|.+ + +++.+.++....++
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~-----~V~~--~--~r~~~~~~~~~~~l 50 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGA-----TVIL--V--ARHQKKLEKVYDAI 50 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCC-----EEEE--E--eCChHHHHHHHHHH
Confidence 5899999999999999999998764 2443 2 44555555443333
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.42 Score=46.22 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=35.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d 151 (337)
..+.|+||+|.||.++|..|+..|. .|.+ .+++.++++..+.++++
T Consensus 54 ~~~lITGAs~GIG~alA~~La~~G~-----~Vil----~~R~~~~l~~~~~~l~~ 99 (320)
T PLN02780 54 SWALVTGPTDGIGKGFAFQLARKGL-----NLVL----VARNPDKLKDVSDSIQS 99 (320)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----CEEE----EECCHHHHHHHHHHHHH
Confidence 5789999999999999999998875 2554 35566777776666654
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.19 Score=48.59 Aligned_cols=72 Identities=13% Similarity=0.075 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~-~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
...+|+||| +|.+|...+..+.. .++ . .|.+ + +++.++++..+.++.+. . ..+. ..+..+++.+|
T Consensus 124 ~~~~v~IiG-aG~qa~~~~~al~~~~~~-~---~v~v--~--~r~~~~a~~~a~~~~~~--~--~~~~-~~~~~~av~~a 189 (304)
T PRK07340 124 PPGDLLLIG-TGVQARAHLEAFAAGLPV-R---RVWV--R--GRTAASAAAFCAHARAL--G--PTAE-PLDGEAIPEAV 189 (304)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHhCCC-C---EEEE--E--cCCHHHHHHHHHHHHhc--C--CeeE-ECCHHHHhhcC
Confidence 457999999 59999999988864 333 1 2444 3 55677777776666532 1 1233 34556789999
Q ss_pred cEEEEec
Q 019713 174 EWALLIG 180 (337)
Q Consensus 174 DvVIita 180 (337)
|+||.+-
T Consensus 190 DiVitaT 196 (304)
T PRK07340 190 DLVVTAT 196 (304)
T ss_pred CEEEEcc
Confidence 9998763
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.13 Score=48.92 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=41.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEE-eccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALK-LLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~-L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
+++||+||| .|.||..++..|... ..+ +.+. ++ |++.++.+..+..+. .....++..+.+.++
T Consensus 5 ~~irIGIIG-~G~IG~~~a~~L~~~-~~~----~el~aV~--dr~~~~a~~~a~~~g--------~~~~~~~~eell~~~ 68 (271)
T PRK13302 5 PELRVAIAG-LGAIGKAIAQALDRG-LPG----LTLSAVA--VRDPQRHADFIWGLR--------RPPPVVPLDQLATHA 68 (271)
T ss_pred CeeEEEEEC-ccHHHHHHHHHHHhc-CCC----eEEEEEE--CCCHHHHHHHHHhcC--------CCcccCCHHHHhcCC
Confidence 458999999 599999999888764 111 2222 23 444455443322111 011223444556889
Q ss_pred cEEEEecc
Q 019713 174 EWALLIGA 181 (337)
Q Consensus 174 DvVIitag 181 (337)
|+|+++..
T Consensus 69 D~Vvi~tp 76 (271)
T PRK13302 69 DIVVEAAP 76 (271)
T ss_pred CEEEECCC
Confidence 99999863
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.43 Score=43.05 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|++++..|+..+.
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~ 31 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGY 31 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998764
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.27 Score=47.11 Aligned_cols=104 Identities=12% Similarity=0.122 Sum_probs=55.2
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC-CCcEEE
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-DAEWAL 177 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~-dADvVI 177 (337)
|.|.||+|.||+++...|..++. .|.+ +-++..+...... ..+..-....+... ++|+||
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh-----~v~i----ltR~~~~~~~~~~----------~~v~~~~~~~~~~~~~~DavI 61 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH-----QVTI----LTRRPPKASQNLH----------PNVTLWEGLADALTLGIDAVI 61 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC-----eEEE----EEcCCcchhhhcC----------ccccccchhhhcccCCCCEEE
Confidence 67999999999999999988764 2433 1233333332111 01111011111222 799999
Q ss_pred EecccCC--CCCC-ch-hhhHHhhHHHHHHHHHHHHhhc-CCCeEEEEeC
Q 019713 178 LIGAKPR--GPGM-ER-AGLLDINGQIFAEQGKALNAVA-SRNVKVIVVG 222 (337)
Q Consensus 178 itag~pr--k~g~-~R-~dll~~N~~I~~~i~~~I~~~a-~p~aivIvvt 222 (337)
..||.|- +.+- .+ ..+...-+..-+.+.+.|++.- .|. .+|..|
T Consensus 62 NLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~-~~isaS 110 (297)
T COG1090 62 NLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPK-VLISAS 110 (297)
T ss_pred ECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCc-EEEecc
Confidence 9999873 2222 22 2233444555556666666431 344 334444
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.48 Score=42.35 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~ 32 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA 32 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC
Confidence 46899999999999999999998775
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.26 Score=45.82 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..|.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~ 43 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGA 43 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCC
Confidence 5799999999999999999998774
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.94 Score=43.97 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=32.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
.+|.|+||+|.||.+++..|+..|. .|.+ .+++++.++....++.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~-----~Vvl----~~R~~~~l~~~~~~l~ 53 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGA-----KVVL----LARGEEGLEALAAEIR 53 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHH
Confidence 5799999999999999999998775 2444 2455556655544454
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=1.6 Score=39.44 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..+.
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~ 29 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGY 29 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998774
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.33 Score=43.97 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.||.|||+ |.+|+.++..|+..|+
T Consensus 20 s~VlviG~-gglGsevak~L~~~GV 43 (198)
T cd01485 20 AKVLIIGA-GALGAEIAKNLVLAGI 43 (198)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC
Confidence 69999995 8899999999999998
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=1.3 Score=40.48 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|..++..|+..+.
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~ 31 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGA 31 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999988764
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=1.7 Score=39.39 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++.|+||+|.+|.+++..|+..+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~ 27 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR 27 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC
Confidence 4799999999999999999998774
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.28 Score=44.44 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~ 31 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGA 31 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998775
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.13 Score=55.18 Aligned_cols=100 Identities=13% Similarity=0.114 Sum_probs=54.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-CcccccCCCcE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~~~eal~dADv 175 (337)
|||.|+||+|++|++++..|...+. .|.. + ++..... .+....+. ...+.. ...+.++++|+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~-----~Vi~--l--dr~~~~~-------~~~~ve~v-~~Dl~d~~l~~al~~~D~ 63 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH-----TVSG--I--AQHPHDA-------LDPRVDYV-CASLRNPVLQELAGEADA 63 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-----EEEE--E--eCChhhc-------ccCCceEE-EccCCCHHHHHHhcCCCE
Confidence 5899999999999999999988764 2332 2 2221110 00000000 000110 11245678999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
||.+++... . +-...|..-...+.+.+++. ++++|.+|
T Consensus 64 VIHLAa~~~--~----~~~~vNv~Gt~nLleAA~~~---GvRiV~~S 101 (699)
T PRK12320 64 VIHLAPVDT--S----APGGVGITGLAHVANAAARA---GARLLFVS 101 (699)
T ss_pred EEEcCccCc--c----chhhHHHHHHHHHHHHHHHc---CCeEEEEE
Confidence 998876421 1 01135666667777777664 24566665
|
|
| >PRK13535 erythrose 4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.22 Score=49.01 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++||+|.|+ |.||..+...|...+.
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~ 25 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGR 25 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCC
Confidence 469999996 9999999998877653
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.87 Score=42.70 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=31.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
+.+.|+||+|.+|.+++..|+..|. .|.+ . +++.+.++....++.
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~-----~Vv~--~--~r~~~~l~~~~~~l~ 51 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGA-----RVVL--G--DVDKPGLRQAVNHLR 51 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHH
Confidence 4699999999999999999998875 2443 2 344455554444443
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=1.6 Score=39.96 Aligned_cols=117 Identities=14% Similarity=0.061 Sum_probs=61.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccC-C-cccEEEecC-----ccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-L-LREVKIGIN-----PYE 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~-~-~~~v~i~t~-----~~e 168 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ . +++.++++....++...... . .....++.. -.+
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC-----HLHL--V--ARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAA 77 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEE--E--eCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 36899999999999999999998775 2443 2 34445554443334321100 0 001111100 012
Q ss_pred ccCCCcEEEEecccCC-CCC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 LFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 al~dADvVIitag~pr-k~g--~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|... .+- .+. ...+..|.. +.+.+.+.+.+. ..+.+++++.
T Consensus 78 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~iss 140 (259)
T PRK06125 78 EAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKAR--GSGVIVNVIG 140 (259)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCcEEEEecC
Confidence 3467899999887532 111 111 122444433 445555666553 3346666653
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.12 Score=52.13 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=48.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..||.|||| |.+|..++..|...|.- .|.+ ..++.++++..+.++.. ..+....+.++.+.++|+
T Consensus 181 ~kkvlviGa-G~~a~~va~~L~~~g~~----~I~V----~nRt~~ra~~La~~~~~------~~~~~~~~l~~~l~~aDi 245 (414)
T PRK13940 181 SKNVLIIGA-GQTGELLFRHVTALAPK----QIML----ANRTIEKAQKITSAFRN------ASAHYLSELPQLIKKADI 245 (414)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCC----EEEE----ECCCHHHHHHHHHHhcC------CeEecHHHHHHHhccCCE
Confidence 368999995 99999999999887762 2444 35666666655443321 112222344678999999
Q ss_pred EEEecccC
Q 019713 176 ALLIGAKP 183 (337)
Q Consensus 176 VIitag~p 183 (337)
||.+-+.|
T Consensus 246 VI~aT~a~ 253 (414)
T PRK13940 246 IIAAVNVL 253 (414)
T ss_pred EEECcCCC
Confidence 99876655
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.94 Score=41.34 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
+.++|.|+||+|.+|..++..|+..|. .|.+ + +++.+.++....++.
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-----~v~~--~--~r~~~~~~~~~~~~~ 56 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-----HVLV--N--GRNAATLEAAVAALR 56 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-----eEEE--E--eCCHHHHHHHHHHHH
Confidence 457899999999999999999998775 2444 2 344455554444443
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.77 Score=43.02 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=14.8
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 019713 98 NIAVSGAAGMIANHLLFKLA 117 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~ 117 (337)
.+.|+| +|.+|.+++..|+
T Consensus 4 ~~lItG-a~gIG~~la~~l~ 22 (275)
T PRK06940 4 VVVVIG-AGGIGQAIARRVG 22 (275)
T ss_pred EEEEEC-CChHHHHHHHHHh
Confidence 345566 5899999999985
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.36 Score=42.21 Aligned_cols=75 Identities=17% Similarity=0.059 Sum_probs=44.1
Q ss_pred CCEEEEEcC-CCchHHHHHHHHHHcCCCCCCCceEEEeccccch--hh--HHHhHHHhHhhhccCCcccEEEecCccccc
Q 019713 96 MVNIAVSGA-AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQ--ALEGVAMELEDSLFPLLREVKIGINPYELF 170 (337)
Q Consensus 96 ~~KI~IIGA-aG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~--~~--~l~g~a~DL~d~~~~~~~~v~i~t~~~eal 170 (337)
-.||++||= -+.|..+++..+..-|. .+++...+.. +. ..-..+.+.... ...+++++.+..+++
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~-------~~~~~~P~~~~~~~~~~~~~~~~~~~~~---~g~~i~~~~~~~e~l 71 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFGM-------EVVLIAPEGLRYPPDPEVLEKAKKNAKK---NGGKITITDDIEEAL 71 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTTS-------EEEEESSGGGGGSHHHHHHHHHHHHHHH---HTTEEEEESSHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcCC-------EEEEECCCcccCCCCHHHHHHHHHHHHH---hCCCeEEEeCHHHhc
Confidence 369999994 36899999988887664 2333332221 11 011111111111 124678887777999
Q ss_pred CCCcEEEEec
Q 019713 171 EDAEWALLIG 180 (337)
Q Consensus 171 ~dADvVIita 180 (337)
++||+|....
T Consensus 72 ~~aDvvy~~~ 81 (158)
T PF00185_consen 72 KGADVVYTDR 81 (158)
T ss_dssp TT-SEEEEES
T ss_pred CCCCEEEEcC
Confidence 9999988864
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.1 Score=40.71 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.||.+++..|+..+.
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~ 34 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGA 34 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 36899999999999999999998764
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.31 Score=46.75 Aligned_cols=105 Identities=15% Similarity=0.121 Sum_probs=40.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCc----ccccC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP----YELFE 171 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~----~eal~ 171 (337)
+.||+.|| +|.+-.+........+. + ..++-+|+|. +..+ .+..+-.....+..++++.+.+ ..+++
T Consensus 121 p~rVaFIG-SGPLPlT~i~la~~~~~-~----~~v~~iD~d~--~A~~-~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~ 191 (276)
T PF03059_consen 121 PSRVAFIG-SGPLPLTSIVLAKQHGP-G----ARVHNIDIDP--EANE-LARRLVASDLGLSKRMSFITADVLDVTYDLK 191 (276)
T ss_dssp --EEEEE----SS-HHHHHHH--HTT-------EEEEEESSH--HHHH-HHHHHHH---HH-SSEEEEES-GGGG-GG--
T ss_pred cceEEEEc-CCCcchHHHHHHHHhCC-C----CeEEEEeCCH--HHHH-HHHHHHhhcccccCCeEEEecchhccccccc
Confidence 46999999 69987775443322221 1 2333444443 3222 2222222111233455554333 24578
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEe
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvv 221 (337)
+.|+|++++=+ ||+. +-..++.+.|.++..|+++|++=
T Consensus 192 ~~DvV~lAalV----g~~~--------e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 192 EYDVVFLAALV----GMDA--------EPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp --SEEEE-TT-----S------------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred cCCEEEEhhhc----cccc--------chHHHHHHHHHhhCCCCcEEEEe
Confidence 89999998632 2221 22344555555555678876553
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.31 Score=47.51 Aligned_cols=73 Identities=19% Similarity=0.130 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
...+++||| +|..+..-+..+..-.-+. .|.+ + +++.++++..+..+++. ..++.+..+..+++++||
T Consensus 127 d~~~l~iiG-~G~qA~~~~~a~~~v~~i~---~v~v--~--~r~~~~a~~~~~~~~~~----~~~v~~~~~~~~av~~AD 194 (315)
T PRK06823 127 HVSAIGIVG-TGIQARMQLMYLKNVTDCR---QLWV--W--GRSETALEEYRQYAQAL----GFAVNTTLDAAEVAHAAN 194 (315)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhcCCCC---EEEE--E--CCCHHHHHHHHHHHHhc----CCcEEEECCHHHHhcCCC
Confidence 357999999 5999988777766533222 3554 3 56777777666545432 135666666788999999
Q ss_pred EEEEe
Q 019713 175 WALLI 179 (337)
Q Consensus 175 vVIit 179 (337)
+|+.+
T Consensus 195 IV~ta 199 (315)
T PRK06823 195 LIVTT 199 (315)
T ss_pred EEEEe
Confidence 99875
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.3 Score=47.06 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||.|||+ |-+|+.++..|+..|+
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aGV 51 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLGI 51 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhCC
Confidence 359999995 9999999999999998
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.66 E-value=1.3 Score=42.95 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=19.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAG 119 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~ 119 (337)
+++||+||| +|++|..++..+...
T Consensus 3 ~klrVAIIG-tG~IGt~hm~~l~~~ 26 (302)
T PRK08300 3 SKLKVAIIG-SGNIGTDLMIKILRS 26 (302)
T ss_pred CCCeEEEEc-CcHHHHHHHHHHhcC
Confidence 457999999 699999988777653
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.24 Score=48.89 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=49.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..+++||| +|..+..-+..++.-.-+ +.|.+ + +++.++++..+.++.+. ..++.+..+..+++++||+
T Consensus 129 a~~l~iiG-aG~QA~~~l~a~~~vr~i---~~V~v--~--~r~~~~a~~~~~~~~~~----~~~v~~~~~~~~av~~ADI 196 (346)
T PRK07589 129 SRTMALIG-NGAQSEFQALAFKALLGI---EEIRL--Y--DIDPAATAKLARNLAGP----GLRIVACRSVAEAVEGADI 196 (346)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHHhCCc---eEEEE--E--eCCHHHHHHHHHHHHhc----CCcEEEeCCHHHHHhcCCE
Confidence 57899999 599988776655542212 23444 3 56777877777777641 2256666677899999999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
|+.+-
T Consensus 197 IvtaT 201 (346)
T PRK07589 197 ITTVT 201 (346)
T ss_pred EEEec
Confidence 98753
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=1.2 Score=41.33 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~ 35 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA 35 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36799999999999999999998775
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.31 Score=45.62 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~Gv 48 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAGV 48 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC
Confidence 369999995 9999999999999887
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.25 Score=48.39 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=55.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|+||| .|.||..+|..|..-|. .|. .+| +..+... +... . +.. .+..+.+++||+|
T Consensus 151 ktvgIiG-~G~IG~~vA~~l~~~G~-----~V~--~~d--~~~~~~~----~~~~---~----~~~-~~l~ell~~aDiV 208 (333)
T PRK13243 151 KTIGIIG-FGRIGQAVARRAKGFGM-----RIL--YYS--RTRKPEA----EKEL---G----AEY-RPLEELLRESDFV 208 (333)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCCC-----EEE--EEC--CCCChhh----HHHc---C----CEe-cCHHHHHhhCCEE
Confidence 6999999 59999999999876554 243 233 3322111 0110 1 111 2456788999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--CchhHHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNAL 230 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN--Pvd~~t~ 230 (337)
++... ..+ .+..++.+ +.+... .+++++|+++= .+|.-+.
T Consensus 209 ~l~lP--~t~---------~T~~~i~~--~~~~~m-k~ga~lIN~aRg~~vd~~aL 250 (333)
T PRK13243 209 SLHVP--LTK---------ETYHMINE--ERLKLM-KPTAILVNTARGKVVDTKAL 250 (333)
T ss_pred EEeCC--CCh---------HHhhccCH--HHHhcC-CCCeEEEECcCchhcCHHHH
Confidence 99752 111 11122211 234443 68899999883 4555443
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.81 Score=46.74 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=62.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc-----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE----- 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e----- 168 (337)
+++.|+||+|.+|.+++..|+..|. .|.+ . +++.+.++..+.++.... .++... .| +.+
T Consensus 316 ~~~lv~G~s~giG~~~a~~l~~~G~-----~v~~--~--~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~~~~~ 382 (582)
T PRK05855 316 KLVVVTGAGSGIGRETALAFAREGA-----EVVA--S--DIDEAAAERTAELIRAAG----AVAHAYRVDVSDADAMEAF 382 (582)
T ss_pred CEEEEECCcCHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHHhcC----CeEEEEEcCCCCHHHHHHH
Confidence 6899999999999999999998775 2443 2 445555554444443211 011111 11 111
Q ss_pred ------ccCCCcEEEEecccCCCCC---Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 ------LFEDAEWALLIGAKPRGPG---MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 ------al~dADvVIitag~prk~g---~~R~---dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|...... .+.. ..+..|. .+.+...+.+.+. ..++.||+++-
T Consensus 383 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~g~iv~~sS 452 (582)
T PRK05855 383 AEWVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVER-GTGGHIVNVAS 452 (582)
T ss_pred HHHHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCcEEEEECC
Confidence 1235799999988643211 1111 2344553 3444555556554 34456777664
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.29 Score=44.39 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
||+.|+||+|.+|.+++..|+..+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~ 25 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH 25 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC
Confidence 4899999999999999999988764
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=1.3 Score=43.12 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=33.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
..+|.|+||+|.||.+++..|+..|. .|.+ .++++++++....++.
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~-----~Vvl----~~R~~~~l~~~~~~~~ 52 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGA-----RLVL----AARDEEALQAVAEECR 52 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHH
Confidence 35899999999999999999998875 2444 2455666665555554
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.16 Score=49.80 Aligned_cols=63 Identities=21% Similarity=0.073 Sum_probs=37.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
-+||+||| .|.||..+|..|+. + ++ ..+..+| +..... .... +....+..+.+++||+
T Consensus 146 g~~VgIIG-~G~IG~~vA~~L~~-~-~g----~~V~~~d--~~~~~~------~~~~-------~~~~~~l~ell~~aDv 203 (332)
T PRK08605 146 DLKVAVIG-TGRIGLAVAKIFAK-G-YG----SDVVAYD--PFPNAK------AATY-------VDYKDTIEEAVEGADI 203 (332)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHh-c-CC----CEEEEEC--CCccHh------HHhh-------ccccCCHHHHHHhCCE
Confidence 36899999 59999999999853 2 22 1222333 322211 0100 1122345678899999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
|+++.
T Consensus 204 Ivl~l 208 (332)
T PRK08605 204 VTLHM 208 (332)
T ss_pred EEEeC
Confidence 99875
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.24 Score=43.34 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+||.|||| |.||...+..|...+.
T Consensus 13 ~~~vlVvGG-G~va~rka~~Ll~~ga 37 (157)
T PRK06719 13 NKVVVIIGG-GKIAYRKASGLKDTGA 37 (157)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC
Confidence 469999996 9999999999988664
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.45 Score=46.66 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=22.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVL 122 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~ 122 (337)
+||+|+||+|.+|..++..|...+.+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~ 26 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYF 26 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCc
Confidence 58999999999999999988776543
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.39 Score=45.63 Aligned_cols=72 Identities=18% Similarity=0.187 Sum_probs=47.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..+|.|+|| |.+|.+++..|...+.. .|.+ .+++.++++..+.++.... .+.+..+..+.+.++|+
T Consensus 123 ~k~vlVlGa-Gg~a~ai~~aL~~~g~~----~V~v----~~R~~~~a~~l~~~~~~~~-----~~~~~~~~~~~~~~~Di 188 (278)
T PRK00258 123 GKRILILGA-GGAARAVILPLLDLGVA----EITI----VNRTVERAEELAKLFGALG-----KAELDLELQEELADFDL 188 (278)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHhhhcc-----ceeecccchhccccCCE
Confidence 468999995 99999999999977752 2544 3566677766555443211 12221133467889999
Q ss_pred EEEecc
Q 019713 176 ALLIGA 181 (337)
Q Consensus 176 VIitag 181 (337)
||.+-.
T Consensus 189 vInaTp 194 (278)
T PRK00258 189 IINATS 194 (278)
T ss_pred EEECCc
Confidence 998753
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.48 E-value=1.4 Score=40.29 Aligned_cols=46 Identities=22% Similarity=0.140 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ + +++.+.++..+.++.
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~-----~vv~--~--~r~~~~~~~~~~~~~ 52 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA-----AVAL--A--DLDAALAERAAAAIA 52 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHH
Confidence 35799999999999999999998775 2444 2 345555555444444
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=1.8 Score=39.84 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=31.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
+.+.|+||+|.+|.+++..|+..|. .|.+ . +++.++++....++.
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~ 53 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGA-----SVAI--C--GRDEERLASAEARLR 53 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHHHHHHHH
Confidence 5799999999999999999998775 2444 2 345555554444443
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=1.8 Score=40.03 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~ 32 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA 32 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 36899999999999999999998775
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=2.3 Score=38.87 Aligned_cols=115 Identities=14% Similarity=0.136 Sum_probs=61.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--c------
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--P------ 166 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~------ 166 (337)
.+++.|+||+|.||.+++..|+..|. .|.+ + +++.+.++....++.+.. + ..++... .| +
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~-----~v~~--~--~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~Dl~~~~~~~~ 77 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGA-----DVLI--V--ARDADALAQARDELAEEF-P-EREVHGLAADVSDDEDRRA 77 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEE--E--eCCHHHHHHHHHHHHhhC-C-CCeEEEEECCCCCHHHHHH
Confidence 35899999999999999999998775 2443 2 344455554444444321 1 0112111 11 1
Q ss_pred -----ccccCCCcEEEEecccCC-CC--CCchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 -----YELFEDAEWALLIGAKPR-GP--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 -----~eal~dADvVIitag~pr-k~--g~~R~---dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+...|+||..+|... .+ ..+.. ..+..|.. +.+...+.+.+. +.+.+|+++-
T Consensus 78 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~ii~~sS 147 (257)
T PRK09242 78 ILDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQH--ASSAIVNIGS 147 (257)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCceEEEECc
Confidence 123456799999887521 11 11111 22444433 444444555543 3446666654
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.17 Score=46.04 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|++|.|+||+|.+|++++..|+..+.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~ 26 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGT 26 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCC
Confidence 35799999999999999999998775
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=93.42 E-value=1.3 Score=42.14 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
+|.|+||+|++|++++..|+..+
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g 23 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRS 23 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCC
Confidence 58899999999999999998876
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.76 Score=42.38 Aligned_cols=26 Identities=27% Similarity=0.128 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..+|.|+||+|.+|.+++..|+..|.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~ 29 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY 29 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC
Confidence 45899999999999999999998774
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.75 Score=41.38 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+|.|+||+|.+|+.++..|+..|.
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~ 30 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGA 30 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998775
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.16 Score=46.81 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~ 30 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGA 30 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.9 Score=41.37 Aligned_cols=45 Identities=22% Similarity=0.187 Sum_probs=31.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ + +++.+.++....++.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~-----~Vi~--~--~r~~~~~~~~~~~~~ 53 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGA-----HVIV--S--SRKLDGCQAVADAIV 53 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHH
Confidence 5799999999999999999998774 2443 2 344455544444443
|
|
| >PLN03129 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.15 Score=53.46 Aligned_cols=117 Identities=14% Similarity=0.132 Sum_probs=68.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHH-----cCCCCCCCceEEEeccccch--h---hHHHhHHHhHhhhccCCcccEEEecCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAA-----GEVLGPDQPIALKLLGSERS--L---QALEGVAMELEDSLFPLLREVKIGINP 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~-----~~l~~e~~~v~L~L~d~d~~--~---~~l~g~a~DL~d~~~~~~~~v~i~t~~ 166 (337)
.||.|.|| |..|-++|..|.. .|+-.++-.-.+.++|.+-- . +.+......+.+ +.....+.
T Consensus 322 ~riv~~GA-GsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~-------~~~~~~~L 393 (581)
T PLN03129 322 QRILFAGA-GEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAH-------DHEPGASL 393 (581)
T ss_pred ceEEEECC-CHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHh-------hcccCCCH
Confidence 59999995 9999999988876 35532211123455554310 1 112111111221 11112456
Q ss_pred ccccCC--CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc---hhHHHHHHHHC
Q 019713 167 YELFED--AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNA 236 (337)
Q Consensus 167 ~eal~d--ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv---d~~t~i~~k~s 236 (337)
.+++++ +|+.|=+.+.| | -+-+++.+.|.++ ++..+|.-.+||. +....-+++++
T Consensus 394 ~e~v~~vkptvLIG~S~~~---g-----------~Ft~evi~~Ma~~-~~rPIIFaLSNPt~~~E~~pe~a~~~T 453 (581)
T PLN03129 394 LEAVKAIKPTVLIGLSGVG---G-----------TFTKEVLEAMASL-NERPIIFALSNPTSKAECTAEEAYTWT 453 (581)
T ss_pred HHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhc-CCCCEEEECCCCCCCcCcCHHHHHHhh
Confidence 788998 89888655433 2 1224666777777 6888999999996 55555566654
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.29 Score=46.56 Aligned_cols=60 Identities=17% Similarity=0.223 Sum_probs=39.1
Q ss_pred EEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEEEEec
Q 019713 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIG 180 (337)
Q Consensus 101 IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVIita 180 (337)
||| .|.||..++..|+..+. .|.+ + |++.++.+.. .+. ......+..++++++|+||++.
T Consensus 1 ~IG-lG~mG~~mA~~L~~~G~-----~V~v--~--dr~~~~~~~l----~~~------g~~~~~s~~~~~~~advVil~v 60 (288)
T TIGR01692 1 FIG-LGNMGGPMAANLLKAGH-----PVRV--F--DLFPDAVEEA----VAA------GAQAAASPAEAAEGADRVITML 60 (288)
T ss_pred CCc-ccHhHHHHHHHHHhCCC-----eEEE--E--eCCHHHHHHH----HHc------CCeecCCHHHHHhcCCEEEEeC
Confidence 589 59999999999998774 2443 3 4455554432 211 1223345567899999999875
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.34 E-value=1.2 Score=40.28 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~ 31 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGA 31 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 36899999999999999999998774
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.46 Score=47.62 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=55.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|+||| .|.||..+|..|..-+. .| .-+ |+.....+ ..+.. .++...+..+.+++||+|
T Consensus 193 ktVGIvG-~G~IG~~vA~~l~~fG~-----~V--~~~--dr~~~~~~-----~~~~~-----g~~~~~~l~ell~~aDvV 252 (385)
T PRK07574 193 MTVGIVG-AGRIGLAVLRRLKPFDV-----KL--HYT--DRHRLPEE-----VEQEL-----GLTYHVSFDSLVSVCDVV 252 (385)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----EE--EEE--CCCCCchh-----hHhhc-----CceecCCHHHHhhcCCEE
Confidence 6899999 59999999998876443 13 223 33221111 11100 122223456788999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--CchhHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNA 229 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN--Pvd~~t 229 (337)
++..... .++..++. .+.+... ++++++|+++- .+|.-+
T Consensus 253 ~l~lPlt-----------~~T~~li~--~~~l~~m-k~ga~lIN~aRG~iVDe~A 293 (385)
T PRK07574 253 TIHCPLH-----------PETEHLFD--ADVLSRM-KRGSYLVNTARGKIVDRDA 293 (385)
T ss_pred EEcCCCC-----------HHHHHHhC--HHHHhcC-CCCcEEEECCCCchhhHHH
Confidence 9875211 11222221 2334444 68899998874 345444
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=1.8 Score=39.48 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=22.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+|.|+||+|.+|..++..|+..+.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~ 27 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD 27 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC
Confidence 4799999999999999999998764
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.16 Score=50.25 Aligned_cols=73 Identities=21% Similarity=0.286 Sum_probs=42.3
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCc----ccccCCCc
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP----YELFEDAE 174 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~----~eal~dAD 174 (337)
|.|+|| |.||+.++..|+...-+. .+.+ .+++.++++..+.++.. .....+.+...+ .+.++++|
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~---~v~v----a~r~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~l~~~~~~~d 69 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFE---EVTV----ADRNPEKAERLAEKLLG---DRVEAVQVDVNDPESLAELLRGCD 69 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE----EEEE----EESSHHHHHHHHT--TT---TTEEEEE--TTTHHHHHHHHTTSS
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCC---cEEE----EECCHHHHHHHHhhccc---cceeEEEEecCCHHHHHHHHhcCC
Confidence 789997 999999999998876532 2444 36677777765443311 111112222222 35689999
Q ss_pred EEEEeccc
Q 019713 175 WALLIGAK 182 (337)
Q Consensus 175 vVIitag~ 182 (337)
+||.++|.
T Consensus 70 vVin~~gp 77 (386)
T PF03435_consen 70 VVINCAGP 77 (386)
T ss_dssp EEEE-SSG
T ss_pred EEEECCcc
Confidence 99998754
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.37 Score=55.72 Aligned_cols=69 Identities=17% Similarity=0.164 Sum_probs=45.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d 172 (337)
.+.++||++|| .|.||..++..|+..+. .+.. + |++.++++.. .+.. .....+..+.+++
T Consensus 321 ~~~~~~IGfIG-lG~MG~~mA~~L~~~G~-----~V~v--~--dr~~~~~~~l----~~~G------a~~~~s~~e~~~~ 380 (1378)
T PLN02858 321 AKPVKRIGFIG-LGAMGFGMASHLLKSNF-----SVCG--Y--DVYKPTLVRF----ENAG------GLAGNSPAEVAKD 380 (1378)
T ss_pred ccCCCeEEEEC-chHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHH----HHcC------CeecCCHHHHHhc
Confidence 44468999999 69999999999998775 2433 3 4455554432 2211 1122345678899
Q ss_pred CcEEEEecc
Q 019713 173 AEWALLIGA 181 (337)
Q Consensus 173 ADvVIitag 181 (337)
||+||++..
T Consensus 381 aDvVi~~V~ 389 (1378)
T PLN02858 381 VDVLVIMVA 389 (1378)
T ss_pred CCEEEEecC
Confidence 999998753
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=1 Score=41.72 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.||.+++..|+..|.
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~ 34 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGA 34 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998764
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.52 Score=42.76 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~G~ 30 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFAREGA 30 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 35899999999999999999988774
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.43 Score=45.84 Aligned_cols=67 Identities=16% Similarity=0.056 Sum_probs=40.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..||+|+|+ |.+|..++..|...+. .|.+ .+++.+++... .++ . . ..+. ..+..+.++++|+
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~~G~-----~V~v----~~R~~~~~~~~-~~~---g--~-~~~~-~~~l~~~l~~aDi 212 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSALGA-----RVFV----GARSSADLARI-TEM---G--L-IPFP-LNKLEEKVAEIDI 212 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHH-HHC---C--C-eeec-HHHHHHHhccCCE
Confidence 369999995 9999999999987664 2443 24444443211 111 1 0 0111 1223567889999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
||.+.
T Consensus 213 Vint~ 217 (287)
T TIGR02853 213 VINTI 217 (287)
T ss_pred EEECC
Confidence 99975
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.86 Score=41.27 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..+|.|+||+|.||++++..|+..+.
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~ 31 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS 31 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.1 Score=48.84 Aligned_cols=108 Identities=18% Similarity=0.144 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch--hhHHHh---HHHhHhhhccCCc---------ccEE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEG---VAMELEDSLFPLL---------REVK 161 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~--~~~l~g---~a~DL~d~~~~~~---------~~v~ 161 (337)
.-||+|+| +|-+|++.|..+++.|+ .|. |+||... ...++. ...+|++.. .+. ..+.
T Consensus 3 ~~ki~ivg-Sgl~g~~WAmlFAs~Gy-----qVq--lYDI~e~Ql~~ALen~~Kel~~Lee~g-~lrGnlsa~eqla~is 73 (313)
T KOG2305|consen 3 FGKIAIVG-SGLVGSSWAMLFASSGY-----QVQ--LYDILEKQLQTALENVEKELRKLEEHG-LLRGNLSADEQLALIS 73 (313)
T ss_pred ccceeEee-cccccchHHHHHhccCc-----eEE--EeeccHHHHHHHHHHHHHHHHHHHHhh-hhccCccHHHHHHHHh
Confidence 35999999 79999999999999997 255 4555432 112222 223333322 111 1233
Q ss_pred EecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhH
Q 019713 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (337)
Q Consensus 162 i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~ 228 (337)
.+++..|..++|=.|=. .+.+.+...+.+.+.|++.+.|.. |+.+.....|
T Consensus 74 ~t~~l~E~vk~Ai~iQE--------------cvpE~L~lkk~ly~qlD~i~d~~t--IlaSSTSt~m 124 (313)
T KOG2305|consen 74 GTTSLNELVKGAIHIQE--------------CVPEDLNLKKQLYKQLDEIADPTT--ILASSTSTFM 124 (313)
T ss_pred CCccHHHHHhhhhhHHh--------------hchHhhHHHHHHHHHHHHhcCCce--EEeccccccC
Confidence 34445566666533222 234456777888899999877764 4566554444
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=1.4 Score=40.29 Aligned_cols=26 Identities=19% Similarity=0.075 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..+|.|+||+|.+|.+++..|+..+.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~ 32 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGA 32 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC
Confidence 36899999999999999999998774
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.36 Score=48.27 Aligned_cols=76 Identities=14% Similarity=0.247 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~-~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
...+++||| +|..+..-+..++. ..-+. .|.+ .+++.++++..+.++.+.. +-..++.+..+..+++++|
T Consensus 154 da~~l~iiG-~G~QA~~~l~a~~~v~~~i~---~V~v----~~r~~~~a~~f~~~~~~~~-~~~~~v~~~~s~~eav~~A 224 (379)
T PRK06199 154 DSKVVGLLG-PGVMGKTILAAFMAVCPGID---TIKI----KGRGQKSLDSFATWVAETY-PQITNVEVVDSIEEVVRGS 224 (379)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHhcCCcc---EEEE----ECCCHHHHHHHHHHHHHhc-CCCceEEEeCCHHHHHcCC
Confidence 357999999 59999887777665 22122 2544 3567778887777776432 1112466666778999999
Q ss_pred cEEEEe
Q 019713 174 EWALLI 179 (337)
Q Consensus 174 DvVIit 179 (337)
|+|+.+
T Consensus 225 DIVvta 230 (379)
T PRK06199 225 DIVTYC 230 (379)
T ss_pred CEEEEc
Confidence 999864
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.19 Score=49.42 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+|+||+|+||+|..|..+...|....-
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ 27 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPD 27 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Confidence 368999999999999999999988765
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.37 Score=46.84 Aligned_cols=91 Identities=12% Similarity=0.174 Sum_probs=53.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|+||| .|.||..+|..|..-|. .|. .+| +..+...+ .. ......+..+.+++||+|
T Consensus 137 ~tvgIvG-~G~IG~~vA~~l~afG~-----~V~--~~~--~~~~~~~~----~~--------~~~~~~~l~e~l~~aDvv 194 (312)
T PRK15469 137 FTIGILG-AGVLGSKVAQSLQTWGF-----PLR--CWS--RSRKSWPG----VQ--------SFAGREELSAFLSQTRVL 194 (312)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-----EEE--EEe--CCCCCCCC----ce--------eecccccHHHHHhcCCEE
Confidence 6999999 69999999999876554 132 233 22211111 00 000012356889999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+++.... ..+..++. .+.+++. +|++++|+++-
T Consensus 195 v~~lPlt-----------~~T~~li~--~~~l~~m-k~ga~lIN~aR 227 (312)
T PRK15469 195 INLLPNT-----------PETVGIIN--QQLLEQL-PDGAYLLNLAR 227 (312)
T ss_pred EECCCCC-----------HHHHHHhH--HHHHhcC-CCCcEEEECCC
Confidence 9875211 12223332 2345554 78999999984
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.21 E-value=1.2 Score=40.28 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++|.|+||+|.+|+.++..|+..+.
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~ 27 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGW 27 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.34 Score=45.07 Aligned_cols=25 Identities=8% Similarity=-0.133 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..+.
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~ 28 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD 28 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC
Confidence 4799999999999999999988774
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.18 Score=50.45 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE 136 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d 136 (337)
+..||+|||+ |-+|+.++..|+..|+ + .|+|+|-|
T Consensus 175 ~~~~VaIVG~-GG~GS~Va~~LAR~GV-g-----eI~LVD~D 209 (393)
T PRK06153 175 EGQRIAIIGL-GGTGSYILDLVAKTPV-R-----EIHLFDGD 209 (393)
T ss_pred hhCcEEEEcC-CccHHHHHHHHHHcCC-C-----EEEEECCC
Confidence 3469999995 9999999999999997 3 34455555
|
|
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.16 Score=48.03 Aligned_cols=136 Identities=10% Similarity=0.044 Sum_probs=78.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC----CCCCCceEEEeccccc--hhhH--HHhHHHhHhhhccCCcccEEEecCccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV----LGPDQPIALKLLGSER--SLQA--LEGVAMELEDSLFPLLREVKIGINPYE 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l----~~e~~~v~L~L~d~d~--~~~~--l~g~a~DL~d~~~~~~~~v~i~t~~~e 168 (337)
.||.|.|| |..|-.++..|...+. -.++-.-.++++|..- ..++ +......+.+.. .+-....+..+
T Consensus 26 ~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~----~~~~~~~~L~e 100 (254)
T cd00762 26 HKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFA----NPERESGDLED 100 (254)
T ss_pred cEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHc----CcccccCCHHH
Confidence 59999995 9999999988876443 1111111344555431 0101 111111111111 11111245778
Q ss_pred ccC--CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch---hHHHHHHHHCCCCCCCe
Q 019713 169 LFE--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN---TNALICLKNAPSIPAKN 243 (337)
Q Consensus 169 al~--dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd---~~t~i~~k~s~~~p~kv 243 (337)
+++ ++|+.|=+.+.| | -+-+++.+.|.++ +++.+|.-.+||.. ....-+++++. .+.+
T Consensus 101 av~~~kptvlIG~S~~~---g-----------~ft~evv~~Ma~~-~~~PIIFaLSNPt~~aE~tpe~a~~~t~--G~ai 163 (254)
T cd00762 101 AVEAAKPDFLIGVSRVG---G-----------AFTPEVIRAXAEI-NERPVIFALSNPTSKAECTAEEAYTATE--GRAI 163 (254)
T ss_pred HHHhhCCCEEEEeCCCC---C-----------CCCHHHHHHHhhc-CCCCEEEECCCcCCccccCHHHHHhhcC--CCEE
Confidence 999 999988665433 2 1225677777777 68889999999974 55666677652 2357
Q ss_pred EEecCchhHHH
Q 019713 244 FHALTRLDENR 254 (337)
Q Consensus 244 IG~gT~LDs~R 254 (337)
|++|.....+.
T Consensus 164 ~AtGspf~pv~ 174 (254)
T cd00762 164 FASGSPFHPVE 174 (254)
T ss_pred EEECCCCCCcc
Confidence 88888765543
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.9 Score=42.99 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
|+||+|||+ |.||..++..|...+
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~ 24 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDP 24 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCC
Confidence 579999996 999999998887654
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.16 E-value=1.4 Score=39.80 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..+.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~ 26 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA 26 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC
Confidence 4799999999999999999988765
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.52 Score=42.70 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 21 ~s~VlIiG~-gglG~evak~La~~GV 45 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLVLSGI 45 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHHHcCC
Confidence 369999995 9999999999999997
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=1.1 Score=41.65 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=22.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..|.
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~ 28 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY 28 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC
Confidence 4689999999999999999998774
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.25 Score=53.29 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=24.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGP 124 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e 124 (337)
..||+|+|+ | +|++++..|+..|++|+
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~ 133 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGE 133 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCe
Confidence 469999996 9 99999999999998775
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.19 Score=45.61 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|+|+| .|.||+.++..|...|.
T Consensus 28 gk~v~I~G-~G~vG~~~A~~L~~~G~ 52 (200)
T cd01075 28 GKTVAVQG-LGKVGYKLAEHLLEEGA 52 (200)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC
Confidence 46899999 59999999999988775
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.31 Score=48.31 Aligned_cols=48 Identities=17% Similarity=0.057 Sum_probs=39.0
Q ss_pred EecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 162 i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
..+.||..++++|.|+.+. -+|+++..++.+.|+++++|+++ ..+|..
T Consensus 59 ~~~~Dy~~~~~~dmvieav--------------~edl~Lk~~l~~~le~v~~~~~i--~gsntS 106 (380)
T KOG1683|consen 59 VETLDYTGFANADMVIEAV--------------FEDLELKHELFKSLEKVEPPKCI--RGSNTS 106 (380)
T ss_pred ccccccccccccceeccch--------------hhhHHHHHHHHHHHHhhcCCcce--eeeccc
Confidence 3467899999999996653 57899999999999999888885 566653
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.56 Score=42.97 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~ 33 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA 33 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998775
|
|
| >PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.073 Score=49.25 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=39.9
Q ss_pred cccceEEEe-ccCCCcccccccceEcCeehhhhhhhc------ccch-------HHH-HHHHHhcc------Ccccceeh
Q 019713 269 KVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKDH------KWLE-------EGF-TETIQKVR------LVDNFTLI 327 (337)
Q Consensus 269 ~V~~v~V~G-nHG~t~vp~~S~a~V~G~pl~e~i~~~------~~~~-------~e~-~~~v~~~g------~~~~~~l~ 327 (337)
+|+ .-+.| || +.|+..++++|+++.+.+.+. .+.. ..+ .+.++..+ +.|++|++
T Consensus 2 ~l~-~~~~GlNH----~~W~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~p~~y~~ 76 (232)
T PF11975_consen 2 DLD-YDYAGLNH----FTWFTKVRYKGKDLYPELREWIEEYGEEFYEEEPEDQDSPWSPDLYRAEGLKPFGYYLPNSYLH 76 (232)
T ss_dssp GEE-EEEEEETT----EEEEEEEEETTEEHHHHHHHHHHHHGGG-GTSSTT-TTSHHHHHHHHHHSCHCEGGSCCHGGGH
T ss_pred ceE-EEEEEEcC----cEeEEEEEECCcccHHHHHHHHHhccccccccccccccchhhHHHHHHhcccccCcccCCcchh
Confidence 455 35689 99 999999999999977644321 1111 012 24455566 88999999
Q ss_pred eeeee
Q 019713 328 LFVMN 332 (337)
Q Consensus 328 ~~~~~ 332 (337)
||||.
T Consensus 77 yy~~~ 81 (232)
T PF11975_consen 77 YYYYP 81 (232)
T ss_dssp HHCCH
T ss_pred HHhcC
Confidence 99984
|
It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A. |
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=1.8 Score=39.79 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.||.+++..|+..|.
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~ 33 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGV 33 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998775
|
|
| >KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.078 Score=50.24 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=43.2
Q ss_pred CEEE-EEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc-cchhhHHHhHHHhH--hhhccCCcccEEEecCcccccCC
Q 019713 97 VNIA-VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS-ERSLQALEGVAMEL--EDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 97 ~KI~-IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~-d~~~~~l~g~a~DL--~d~~~~~~~~v~i~t~~~eal~d 172 (337)
.|++ |+||+|.||+-+...|.....|+ |..++. .++-.+.-+.+..- .|....-....++...+.+.|.+
T Consensus 4 kk~a~vlGaTGaVGQrFi~lLsdhP~f~------ikvLgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~~F~e 77 (361)
T KOG4777|consen 4 KKSAPVLGATGAVGQRFISLLSDHPYFS------IKVLGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTADSFNE 77 (361)
T ss_pred ccccceeeccchhHHHHHHHhccCCcce------eeeecccccccCCceEecccchhcccccchhhhhhHhhcChhhccc
Confidence 3667 99999999999999998887763 222322 22211111111100 11110011234444456788999
Q ss_pred CcEEEEec
Q 019713 173 AEWALLIG 180 (337)
Q Consensus 173 ADvVIita 180 (337)
+|+|+...
T Consensus 78 cDIvfsgl 85 (361)
T KOG4777|consen 78 CDIVFSGL 85 (361)
T ss_pred ccEEEecC
Confidence 99998854
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.31 Score=44.78 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|..++..|+..|.
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~ 40 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGA 40 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.82 Score=41.09 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.||..++..|+..+.
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~ 31 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA 31 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 35899999999999999999998775
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=1.6 Score=40.22 Aligned_cols=25 Identities=16% Similarity=0.016 Sum_probs=22.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++.|+||+|.+|.+++..|+..+.
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~ 35 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGA 35 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 5799999999999999999998775
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.55 Score=45.24 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=46.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc-----------------hhhHHHhHHHhHhhhccCCccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-----------------SLQALEGVAMELEDSLFPLLRE 159 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~-----------------~~~~l~g~a~DL~d~~~~~~~~ 159 (337)
.||.|+|+ |.+|..+|..|+..|+- .+.| +|.|. ...+++..+..|.+.. |. .+
T Consensus 20 s~VLIvG~-gGLG~EiaKnLalaGVg----~itI--~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN-p~-V~ 90 (286)
T cd01491 20 SNVLISGL-GGLGVEIAKNLILAGVK----SVTL--HDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN-PY-VP 90 (286)
T ss_pred CcEEEEcC-CHHHHHHHHHHHHcCCC----eEEE--EcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC-CC-CE
Confidence 58999995 99999999999999983 1444 44432 1223443333344322 21 23
Q ss_pred EEEecC--cccccCCCcEEEEec
Q 019713 160 VKIGIN--PYELFEDAEWALLIG 180 (337)
Q Consensus 160 v~i~t~--~~eal~dADvVIita 180 (337)
++..++ +.+.+.+.|+||.+.
T Consensus 91 V~~~~~~~~~~~l~~fdvVV~~~ 113 (286)
T cd01491 91 VTVSTGPLTTDELLKFQVVVLTD 113 (286)
T ss_pred EEEEeccCCHHHHhcCCEEEEec
Confidence 443332 457789999998875
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.89 E-value=1.1 Score=40.44 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..+|.|+||+|.+|.+++..|+..+.
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~ 31 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGA 31 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCc
Confidence 45899999999999999999998774
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.85 E-value=1.5 Score=40.03 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~ 36 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGA 36 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.67 Score=45.49 Aligned_cols=84 Identities=14% Similarity=0.127 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEeccccchhhHHH-hHHHhHhhhccCCcccEEEecCcccccCCCcEEEEecccCCCCC
Q 019713 109 ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPG 187 (337)
Q Consensus 109 G~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~-g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVIitag~prk~g 187 (337)
|+.+|..|+..|. ++.+ + |++.++++ ..+..+.+.. ....++..++.+++|+||++-.
T Consensus 32 GspMArnLlkAGh-----eV~V--~--Drnrsa~e~e~~e~LaeaG------A~~AaS~aEAAa~ADVVIL~LP------ 90 (341)
T TIGR01724 32 GSRMAIEFAMAGH-----DVVL--A--EPNREFMSDDLWKKVEDAG------VKVVSDDKEAAKHGEIHVLFTP------ 90 (341)
T ss_pred HHHHHHHHHHCCC-----EEEE--E--eCChhhhhhhhhHHHHHCC------CeecCCHHHHHhCCCEEEEecC------
Confidence 7889999988775 2443 3 34444332 2222233321 2344556799999999998742
Q ss_pred CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 188 MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 188 ~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
|.+..+++.+.+.....++.+||..|
T Consensus 91 ---------d~aaV~eVl~GLaa~L~~GaIVID~S 116 (341)
T TIGR01724 91 ---------FGKGTFSIARTIIEHVPENAVICNTC 116 (341)
T ss_pred ---------CHHHHHHHHHHHHhcCCCCCEEEECC
Confidence 22333444444544445666555444
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.99 Score=42.28 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=57.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc----ccc
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----ELF 170 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~----eal 170 (337)
||.|+||+|.+|..++..|...+. .|.+ ++.. .....+ ...++.+. . ++.. ..| +. +.+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~-----~V~~--~~~~-~~~~~~-~~~~~~~~--~---~~~~~~~D~~~~~~~~~~~ 66 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH-----EVVV--LDNL-SNGSPE-ALKRGERI--T---RVTFVEGDLRDRELLDRLF 66 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC-----eEEE--EeCC-Cccchh-hhhhhccc--c---ceEEEECCCCCHHHHHHHH
Confidence 689999999999999999988764 2433 2211 111111 00111110 0 1111 111 11 223
Q ss_pred --CCCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 171 --EDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 171 --~dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.+.|+||.++|....+ .....+....|+.....+.+.+.+. +.. .+++++
T Consensus 67 ~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~-~~v~~s 120 (328)
T TIGR01179 67 EEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQT-GVK-KFIFSS 120 (328)
T ss_pred HhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhc-CCC-EEEEec
Confidence 2689999988754321 1223345667887777788877765 333 444444
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.7 Score=42.18 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=40.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE--ecCcccccCCCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI--GINPYELFEDAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i--~t~~~eal~dAD 174 (337)
.||.|||+ |.+|..-+..|...|- .|.+ ++.+.. +.++. +.+.. ++.. ..-..+++.++|
T Consensus 10 k~vlVvGg-G~va~rk~~~Ll~~ga-----~VtV--vsp~~~-~~l~~----l~~~~-----~i~~~~~~~~~~dl~~~~ 71 (205)
T TIGR01470 10 RAVLVVGG-GDVALRKARLLLKAGA-----QLRV--IAEELE-SELTL----LAEQG-----GITWLARCFDADILEGAF 71 (205)
T ss_pred CeEEEECc-CHHHHHHHHHHHHCCC-----EEEE--EcCCCC-HHHHH----HHHcC-----CEEEEeCCCCHHHhCCcE
Confidence 59999996 9999999999988774 2443 333322 12222 22111 2333 222346789999
Q ss_pred EEEEecc
Q 019713 175 WALLIGA 181 (337)
Q Consensus 175 vVIitag 181 (337)
+||.+-+
T Consensus 72 lVi~at~ 78 (205)
T TIGR01470 72 LVIAATD 78 (205)
T ss_pred EEEECCC
Confidence 9888643
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=92.77 E-value=1.6 Score=41.20 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+..||.|||| |.+|+.++..|+..|+
T Consensus 9 ~~~~~V~vvG~-GGlGs~v~~~Lar~G~ 35 (244)
T TIGR03736 9 SRPVSVVLVGA-GGTGSQVIAGLARLHH 35 (244)
T ss_pred hCCCeEEEEcC-ChHHHHHHHHHHHccc
Confidence 46689999995 9999999999998764
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.5 Score=50.56 Aligned_cols=25 Identities=36% Similarity=0.298 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.||..++..|+..|.
T Consensus 423 k~vLVTGasggIG~~la~~L~~~Ga 447 (681)
T PRK08324 423 KVALVTGAAGGIGKATAKRLAAEGA 447 (681)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcC
Confidence 6899999999999999999998774
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.72 E-value=1.8 Score=39.68 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..++|.|+||+|.||.+++..|+..+.
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~ 34 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGF 34 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 346899999999999999999988774
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.36 Score=45.90 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=51.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||.|+||+|.+|+++...|...+. .+. .. .+. -.|+.|.. .+ ....++. +-|+|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~-----~v~--~~--~r~-------~~dl~d~~-~~-------~~~~~~~-~pd~V 55 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY-----EVI--AT--SRS-------DLDLTDPE-AV-------AKLLEAF-KPDVV 55 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE-----EEE--EE--STT-------CS-TTSHH-HH-------HHHHHHH---SEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC-----EEE--Ee--Cch-------hcCCCCHH-HH-------HHHHHHh-CCCeE
Confidence 7999999999999999999876553 122 11 111 12222211 00 0011222 37899
Q ss_pred EEecccCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 177 LLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 177 Iitag~prk~g--~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
|.+++...... .........|......+++...+. ++++|.+|
T Consensus 56 in~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~---~~~li~~S 100 (286)
T PF04321_consen 56 INCAAYTNVDACEKNPEEAYAINVDATKNLAEACKER---GARLIHIS 100 (286)
T ss_dssp EE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHC---T-EEEEEE
T ss_pred eccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHc---CCcEEEee
Confidence 99886532111 123344667777788888877764 56777776
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.69 E-value=2.2 Score=38.66 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.||.+++..|+..|.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~ 30 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGA 30 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.67 Score=43.94 Aligned_cols=131 Identities=15% Similarity=0.080 Sum_probs=72.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc----CCCCCC--CceEEEeccccc----hhhHHHhHHHhHhhhccCCcccEEEecCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAG----EVLGPD--QPIALKLLGSER----SLQALEGVAMELEDSLFPLLREVKIGINP 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~----~l~~e~--~~v~L~L~d~d~----~~~~l~g~a~DL~d~~~~~~~~v~i~t~~ 166 (337)
.||.|+|| |..|-.++..|... |+-.++ ..+. ++|..- +.+.+......+.+...+ .....+.
T Consensus 26 ~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~--lvD~~Gll~~~r~~l~~~~~~~a~~~~~----~~~~~~L 98 (255)
T PF03949_consen 26 QRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIW--LVDSKGLLTDDREDLNPHKKPFARKTNP----EKDWGSL 98 (255)
T ss_dssp -EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEE--EEETTEEEBTTTSSHSHHHHHHHBSSST----TT--SSH
T ss_pred cEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEE--EEeccceEeccCccCChhhhhhhccCcc----cccccCH
Confidence 59999995 99999999988877 763100 1233 444321 111222222222222211 1111456
Q ss_pred ccccCCC--cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch---hHHHHHHHHCCCCCC
Q 019713 167 YELFEDA--EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN---TNALICLKNAPSIPA 241 (337)
Q Consensus 167 ~eal~dA--DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd---~~t~i~~k~s~~~p~ 241 (337)
.++++++ |++|=+.+.| | .+-+++.+.|.++ +++.+|.=.+||.. ....-+++++.+.
T Consensus 99 ~eav~~~kPtvLIG~S~~~---g-----------~ft~evv~~Ma~~-~erPIIF~LSNPt~~aE~~peda~~~t~g~-- 161 (255)
T PF03949_consen 99 LEAVKGAKPTVLIGLSGQG---G-----------AFTEEVVRAMAKH-NERPIIFPLSNPTPKAECTPEDAYEWTDGR-- 161 (255)
T ss_dssp HHHHHCH--SEEEECSSST---T-----------SS-HHHHHHCHHH-SSSEEEEE-SSSCGGSSS-HHHHHHTTTSE--
T ss_pred HHHHHhcCCCEEEEecCCC---C-----------cCCHHHHHHHhcc-CCCCEEEECCCCCCcccCCHHHHHhhCCce--
Confidence 7999999 9988766543 2 2236677788887 78889999999975 4555566665211
Q ss_pred CeEEecCchh
Q 019713 242 KNFHALTRLD 251 (337)
Q Consensus 242 kvIG~gT~LD 251 (337)
-+|.+|+-.+
T Consensus 162 ai~AtGSpf~ 171 (255)
T PF03949_consen 162 AIFATGSPFP 171 (255)
T ss_dssp EEEEESS---
T ss_pred EEEecCCccC
Confidence 2467776544
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B .... |
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.63 E-value=2.6 Score=39.18 Aligned_cols=26 Identities=19% Similarity=0.127 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~ 31 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA 31 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35799999999999999999998775
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.55 E-value=3.7 Score=36.86 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=22.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+|.|+||+|.+|.+++..|+..+.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~ 27 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY 27 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC
Confidence 4789999999999999999998764
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.66 Score=46.96 Aligned_cols=91 Identities=13% Similarity=0.062 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
.-.+|+|+|+ |.||..++..+...|. .|.+ + |.++.+++ .+.++ .. .+. ...++++++|
T Consensus 201 ~GktVvViG~-G~IG~~va~~ak~~Ga-----~ViV--~--d~d~~R~~-~A~~~-----G~--~~~---~~~e~v~~aD 259 (413)
T cd00401 201 AGKVAVVAGY-GDVGKGCAQSLRGQGA-----RVIV--T--EVDPICAL-QAAME-----GY--EVM---TMEEAVKEGD 259 (413)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-----EEEE--E--ECChhhHH-HHHhc-----CC--EEc---cHHHHHcCCC
Confidence 3469999995 9999999998877665 1443 2 33444433 22211 11 111 2246788999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
+||.+.|.+ .++..- .++.. .+++++++++.+
T Consensus 260 VVI~atG~~---------------~~i~~~--~l~~m-k~GgilvnvG~~ 291 (413)
T cd00401 260 IFVTTTGNK---------------DIITGE--HFEQM-KDGAIVCNIGHF 291 (413)
T ss_pred EEEECCCCH---------------HHHHHH--HHhcC-CCCcEEEEeCCC
Confidence 999875432 222211 13333 688899999975
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.67 Score=43.02 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 14 ~k~~lITGas~gIG~ala~~l~~~G~ 39 (245)
T PRK12367 14 GKRIGITGASGALGKALTKAFRAKGA 39 (245)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC
Confidence 35899999999999999999998775
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.36 Score=47.63 Aligned_cols=103 Identities=16% Similarity=0.133 Sum_probs=53.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc-cCCcccEEEecCcccccCCCcE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~-~~~~~~v~i~t~~~eal~dADv 175 (337)
++|+||| .|.||..+|..|..-|. .|.. + ++...........+.... ..+........+..+.++.||+
T Consensus 160 ktvGIiG-~G~IG~~vA~~l~afG~-----~V~~--~--dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDi 229 (347)
T PLN02928 160 KTVFILG-YGAIGIELAKRLRPFGV-----KLLA--T--RRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADI 229 (347)
T ss_pred CEEEEEC-CCHHHHHHHHHHhhCCC-----EEEE--E--CCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCE
Confidence 6999999 59999999999875553 2432 2 332111110000000000 0000000011345688999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|++... ..+ .+..++. .+.++.. +|++++|+++=
T Consensus 230 Vvl~lP--lt~---------~T~~li~--~~~l~~M-k~ga~lINvaR 263 (347)
T PLN02928 230 VVLCCT--LTK---------ETAGIVN--DEFLSSM-KKGALLVNIAR 263 (347)
T ss_pred EEECCC--CCh---------HhhcccC--HHHHhcC-CCCeEEEECCC
Confidence 998752 111 1112221 2344454 68999999974
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=92.40 E-value=1.3 Score=43.64 Aligned_cols=84 Identities=19% Similarity=0.193 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHh-HhhhccCCcccEEEecCcccccCCCcEEEEecccCCCCC
Q 019713 109 ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-LEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPG 187 (337)
Q Consensus 109 G~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~D-L~d~~~~~~~~v~i~t~~~eal~dADvVIitag~prk~g 187 (337)
|..+|..|+..|. .|.+ + |++.+.++....+ +.+ ..+...+++.+++++||+||++. |-
T Consensus 32 G~~MA~~La~aG~-----~V~v--~--Dr~~~~l~~~~~~~l~~------~Gi~~asd~~eaa~~ADvVIlaV--P~--- 91 (342)
T PRK12557 32 GSRMAIEFAEAGH-----DVVL--A--EPNRSILSEELWKKVED------AGVKVVSDDAEAAKHGEIHILFT--PF--- 91 (342)
T ss_pred HHHHHHHHHhCCC-----eEEE--E--ECCHHHhhHHHHHHHHH------CCCEEeCCHHHHHhCCCEEEEEC--CC---
Confidence 7788888887764 2444 3 3444332211111 111 12455566778889999999874 21
Q ss_pred CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 188 MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 188 ~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
...++++.+.|.....++.+|+..+
T Consensus 92 ----------~~~v~~Vl~~L~~~L~~g~IVId~S 116 (342)
T PRK12557 92 ----------GKKTVEIAKNILPHLPENAVICNTC 116 (342)
T ss_pred ----------cHHHHHHHHHHHhhCCCCCEEEEec
Confidence 1123334445555445566666554
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.41 Score=46.01 Aligned_cols=95 Identities=19% Similarity=0.269 Sum_probs=59.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC--CCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~--dAD 174 (337)
|||.|+|+.|++|..|...|. ++. +.+.+ ++.. +|+.|... ..+.++ .=|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~----~v~a~-----~~~~-------~Ditd~~~-----------v~~~i~~~~PD 52 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEF----EVIAT-----DRAE-------LDITDPDA-----------VLEVIRETRPD 52 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCc----eEEec-----cCcc-------ccccChHH-----------HHHHHHhhCCC
Confidence 469999999999999998875 221 01221 1111 44444320 122333 358
Q ss_pred EEEEecccCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 175 WALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 175 vVIitag~pr--k~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+||.+|+... +...++..-...|..-...+++.-+++ ++++|-+|
T Consensus 53 vVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~---ga~lVhiS 99 (281)
T COG1091 53 VVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEV---GARLVHIS 99 (281)
T ss_pred EEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHh---CCeEEEee
Confidence 9999887654 233455666778888888888887776 56677666
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.34 Score=44.61 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.||.+++..|+..|.
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~ 31 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGA 31 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.74 Score=43.47 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=44.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.++|.|+|+ |.+|.+++..|+..+. .+.+ .+++.++++..+.++.... .+...+.+...+.++|+
T Consensus 117 ~k~vliiGa-Gg~g~aia~~L~~~g~-----~v~v----~~R~~~~~~~la~~~~~~~-----~~~~~~~~~~~~~~~Di 181 (270)
T TIGR00507 117 NQRVLIIGA-GGAARAVALPLLKADC-----NVII----ANRTVSKAEELAERFQRYG-----EIQAFSMDELPLHRVDL 181 (270)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHhhcC-----ceEEechhhhcccCccE
Confidence 468999995 9999999999987653 2444 2455566665555443211 12222222234568999
Q ss_pred EEEeccc
Q 019713 176 ALLIGAK 182 (337)
Q Consensus 176 VIitag~ 182 (337)
||.+.+.
T Consensus 182 vInatp~ 188 (270)
T TIGR00507 182 IINATSA 188 (270)
T ss_pred EEECCCC
Confidence 9987543
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=2.7 Score=38.57 Aligned_cols=26 Identities=4% Similarity=0.179 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..+.
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~ 32 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKA 32 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.52 Score=42.51 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..+.
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~ 34 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGA 34 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCC
Confidence 36899999999999999999998774
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.27 E-value=2.5 Score=38.06 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..++.|+||+|.+|..++..|+..+.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~ 30 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGA 30 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999988764
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.21 E-value=2.6 Score=39.89 Aligned_cols=44 Identities=32% Similarity=0.347 Sum_probs=31.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhH
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL 149 (337)
.+|.|+||+|.||..++..|+..|. .|.+ . +++.+.++..+.++
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~-----~V~~--~--~r~~~~l~~~~~~l 53 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGA-----KLAL--V--DLEEAELAALAAEL 53 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHh
Confidence 5899999999999999999998875 2444 2 44555555544444
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=92.20 E-value=3.4 Score=34.80 Aligned_cols=115 Identities=13% Similarity=0.054 Sum_probs=62.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-C--c--------
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--P-------- 166 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~--~-------- 166 (337)
.|.|+||+|.+|..++..|+..+-. .+.+ .+.+.+.+.++...-++.... .++.... | +
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~----~v~~--~~r~~~~~~~~~l~~~l~~~~----~~~~~~~~D~~~~~~~~~~~ 71 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGAR----VVIL--TSRSEDSEGAQELIQELKAPG----AKITFIECDLSDPESIRALI 71 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTE----EEEE--EESSCHHHHHHHHHHHHHHTT----SEEEEEESETTSHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCce----EEEE--eeecccccccccccccccccc----cccccccccccccccccccc
Confidence 5889999999999999999988531 2333 222212344444434444211 1222211 0 1
Q ss_pred ---ccccCCCcEEEEecccCCCCC-C--ch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 167 ---YELFEDAEWALLIGAKPRGPG-M--ER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 167 ---~eal~dADvVIitag~prk~g-~--~R---~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
.+....-|++|..+|...... . +. .+.+..|..-.-...+.+.. .+++.||+++-.
T Consensus 72 ~~~~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~--~~~g~iv~~sS~ 136 (167)
T PF00106_consen 72 EEVIKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP--QGGGKIVNISSI 136 (167)
T ss_dssp HHHHHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH--HTTEEEEEEEEG
T ss_pred cccccccccccccccccccccccccccccchhhhhccccccceeeeeeehhee--ccccceEEecch
Confidence 123458899999888654211 1 11 13355554444445555555 246677777743
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.28 Score=44.63 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|||+||||.|.+|..++..+-..|+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~ 25 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGL 25 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCC
Confidence 5999999999999999999987775
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.41 Score=45.75 Aligned_cols=71 Identities=17% Similarity=0.048 Sum_probs=46.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-Ee--cCcccccCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IG--INPYELFED 172 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~--t~~~eal~d 172 (337)
..+|.|+|| |.+|.++++.|+..+.- .|.+ .+++.++++..+.++.... .+. +. .+..+.+.+
T Consensus 125 ~k~vlvlGa-GGaarai~~aL~~~G~~----~i~I----~nRt~~ka~~La~~~~~~~-----~~~~~~~~~~~~~~~~~ 190 (282)
T TIGR01809 125 GFRGLVIGA-GGTSRAAVYALASLGVT----DITV----INRNPDKLSRLVDLGVQVG-----VITRLEGDSGGLAIEKA 190 (282)
T ss_pred CceEEEEcC-cHHHHHHHHHHHHcCCC----eEEE----EeCCHHHHHHHHHHhhhcC-----cceeccchhhhhhcccC
Confidence 458999995 99999999999987763 2554 3566777777665543211 111 11 112345688
Q ss_pred CcEEEEec
Q 019713 173 AEWALLIG 180 (337)
Q Consensus 173 ADvVIita 180 (337)
+|+||.+-
T Consensus 191 ~DiVInaT 198 (282)
T TIGR01809 191 AEVLVSTV 198 (282)
T ss_pred CCEEEECC
Confidence 99999864
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.37 Score=42.65 Aligned_cols=93 Identities=20% Similarity=0.235 Sum_probs=51.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
-.+|+||| .|.||..+|..+..-|. .|.. + |+...... ...+. .+.. .+..+.++.||+
T Consensus 36 g~tvgIiG-~G~IG~~vA~~l~~fG~-----~V~~--~--d~~~~~~~----~~~~~------~~~~-~~l~ell~~aDi 94 (178)
T PF02826_consen 36 GKTVGIIG-YGRIGRAVARRLKAFGM-----RVIG--Y--DRSPKPEE----GADEF------GVEY-VSLDELLAQADI 94 (178)
T ss_dssp TSEEEEES-TSHHHHHHHHHHHHTT------EEEE--E--ESSCHHHH----HHHHT------TEEE-SSHHHHHHH-SE
T ss_pred CCEEEEEE-EcCCcCeEeeeeecCCc-----eeEE--e--cccCChhh----hcccc------ccee-eehhhhcchhhh
Confidence 46999999 59999999999886554 2332 2 33322221 01111 1222 345678899999
Q ss_pred EEEecc-cCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 176 ALLIGA-KPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 176 VIitag-~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
|++... .|...+ ++ |. +.+++. ++++++|+++--
T Consensus 95 v~~~~plt~~T~~-----li--~~-------~~l~~m-k~ga~lvN~aRG 129 (178)
T PF02826_consen 95 VSLHLPLTPETRG-----LI--NA-------EFLAKM-KPGAVLVNVARG 129 (178)
T ss_dssp EEE-SSSSTTTTT-----SB--SH-------HHHHTS-TTTEEEEESSSG
T ss_pred hhhhhccccccce-----ee--ee-------eeeecc-ccceEEEeccch
Confidence 998752 121111 11 11 223343 678999998853
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.07 E-value=2.9 Score=37.77 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+.+.|+||+|.+|.+++..|+..|.
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~ 28 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGF 28 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC
Confidence 4689999999999999999998875
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.58 Score=47.07 Aligned_cols=111 Identities=18% Similarity=0.197 Sum_probs=57.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.++|.|+|+ |.+|..+|..|+..|. .|.+ .|.+.. +.++....+|.. ...++.......+...++|+
T Consensus 5 ~k~v~iiG~-g~~G~~~A~~l~~~G~-----~V~~--~d~~~~-~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~d~ 71 (450)
T PRK14106 5 GKKVLVVGA-GVSGLALAKFLKKLGA-----KVIL--TDEKEE-DQLKEALEELGE----LGIELVLGEYPEEFLEGVDL 71 (450)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----EEEE--EeCCch-HHHHHHHHHHHh----cCCEEEeCCcchhHhhcCCE
Confidence 368999996 8899999999999886 2544 333221 223222222321 11122222112244678999
Q ss_pred EEEecccCC-CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 176 ALLIGAKPR-GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 176 VIitag~pr-k~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
||.+.|.+. .| .....-..+++++.......... + ..+|-+|-.
T Consensus 72 vv~~~g~~~~~~--~~~~a~~~~i~~~~~~~~~~~~~--~-~~vI~ITGS 116 (450)
T PRK14106 72 VVVSPGVPLDSP--PVVQAHKKGIEVIGEVELAYRFS--K-APIVAITGT 116 (450)
T ss_pred EEECCCCCCCCH--HHHHHHHCCCcEEeHHHHHHhhc--C-CCEEEEeCC
Confidence 999887542 22 11111224555555554433332 2 345555543
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.98 E-value=2.2 Score=39.72 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+.|.|+||+|.+|.+++..|+..|.
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~G~ 35 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAAGF 35 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 45899999999999999999998775
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=91.94 E-value=2.5 Score=43.65 Aligned_cols=41 Identities=10% Similarity=-0.018 Sum_probs=27.4
Q ss_pred ccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHh
Q 019713 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA 210 (337)
Q Consensus 169 al~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~ 210 (337)
.++++|+||-+|+... ......+....|+.-...+.+...+
T Consensus 109 l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~ 149 (491)
T PLN02996 109 MWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKK 149 (491)
T ss_pred HHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999998886533 2223344567788777777776665
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.87 Score=45.70 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=55.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|+||| .|.||..+|..|..-+. .|. .+| +.....+. .+.. .+....+..+.+++||+|
T Consensus 200 ktVGIVG-~G~IG~~vA~~L~afG~-----~V~--~~d--~~~~~~~~-----~~~~-----g~~~~~~l~ell~~sDvV 259 (386)
T PLN03139 200 KTVGTVG-AGRIGRLLLQRLKPFNC-----NLL--YHD--RLKMDPEL-----EKET-----GAKFEEDLDAMLPKCDVV 259 (386)
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCC-----EEE--EEC--CCCcchhh-----Hhhc-----CceecCCHHHHHhhCCEE
Confidence 5999999 59999999999876443 232 233 32111110 1100 112223456778999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--CchhHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNA 229 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN--Pvd~~t 229 (337)
++.. |.. ..+..++. .+.+... ++++++|+++= .+|.-+
T Consensus 260 ~l~l--Plt---------~~T~~li~--~~~l~~m-k~ga~lIN~aRG~iVDe~A 300 (386)
T PLN03139 260 VINT--PLT---------EKTRGMFN--KERIAKM-KKGVLIVNNARGAIMDTQA 300 (386)
T ss_pred EEeC--CCC---------HHHHHHhC--HHHHhhC-CCCeEEEECCCCchhhHHH
Confidence 9874 211 11222221 2344454 78999999873 344443
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.92 E-value=1.8 Score=39.62 Aligned_cols=45 Identities=24% Similarity=0.351 Sum_probs=31.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d 151 (337)
|.+.|+||++.+|.+++..|+. +. .|.+. +++.++++..+.++..
T Consensus 1 ~~vlItGas~GIG~aia~~l~~-g~-----~Vil~----~r~~~~~~~~~~~l~~ 45 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH-GE-----DVVLA----ARRPEAAQGLASDLRQ 45 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC-CC-----EEEEE----eCCHHHHHHHHHHHHh
Confidence 3588999999999999999984 42 24442 4556666666566653
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.61 Score=45.45 Aligned_cols=74 Identities=15% Similarity=0.151 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
...+|+||| +|.+|...+..+....-+. .+.+ + +++.++++..+.++.+.. ..++....+..+++. +|
T Consensus 128 ~~~~vgiiG-~G~qa~~h~~al~~~~~i~---~v~v--~--~r~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~l~-aD 195 (326)
T PRK06046 128 DSKVVGIIG-AGNQARTQLLALSEVFDLE---EVRV--Y--DRTKSSAEKFVERMSSVV---GCDVTVAEDIEEACD-CD 195 (326)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhhCCce---EEEE--E--CCCHHHHHHHHHHHHhhc---CceEEEeCCHHHHhh-CC
Confidence 357999999 5999999888776433221 2443 3 455666666655554321 123555555456665 99
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+|+++-
T Consensus 196 iVv~aT 201 (326)
T PRK06046 196 ILVTTT 201 (326)
T ss_pred EEEEec
Confidence 998753
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.45 Score=47.63 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
-++|+||| .|+||+.+|..|..-|.
T Consensus 116 gktvGIIG-~G~IG~~vA~~l~a~G~ 140 (378)
T PRK15438 116 DRTVGIVG-VGNVGRRLQARLEALGI 140 (378)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCCC
Confidence 46999999 59999999999876554
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.58 Score=44.31 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~ 71 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGA 71 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 36899999999999999999998775
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=91.88 E-value=2.9 Score=37.48 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+.|+||+|.+|.+++..|+..+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~ 25 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGY 25 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC
Confidence 578999999999999999998775
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.37 Score=43.46 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
|+|.|+||+|.||.+++..|+..+
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~ 24 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERY 24 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhC
Confidence 489999999999999999998864
|
|
| >COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.96 Score=43.86 Aligned_cols=76 Identities=20% Similarity=0.176 Sum_probs=43.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEe-ccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL-LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L-~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
+-.|++-+|-..+|+.++...-+.-|+ .+.+.- -+.+.+++.. ..+.++.. ....+++++.|..++++||
T Consensus 152 ~g~k~a~vGDgNNv~nSl~~~~a~~G~-----dv~ia~Pk~~~p~~~~~-~~a~~~a~---~~g~~i~~t~d~~eAv~gA 222 (310)
T COG0078 152 KGLKLAYVGDGNNVANSLLLAAAKLGM-----DVRIATPKGYEPDPEVV-EKAKENAK---ESGGKITLTEDPEEAVKGA 222 (310)
T ss_pred cCcEEEEEcCcchHHHHHHHHHHHhCC-----eEEEECCCcCCcCHHHH-HHHHHHHH---hcCCeEEEecCHHHHhCCC
Confidence 457999999766677777666555554 133210 0011122221 23322221 1234788998999999999
Q ss_pred cEEEEe
Q 019713 174 EWALLI 179 (337)
Q Consensus 174 DvVIit 179 (337)
|+|..=
T Consensus 223 DvvyTD 228 (310)
T COG0078 223 DVVYTD 228 (310)
T ss_pred CEEEec
Confidence 998763
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.87 Score=44.37 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.||+|+||+|.+|.-++..|...+-
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~ 26 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDD 26 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCC
Confidence 4899999999999999999988765
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.72 E-value=3.8 Score=37.37 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+|.|+||+|.+|.+++..|+..+.
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~ 32 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGA 32 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCC
Confidence 5899999999999999999998875
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.60 E-value=3.1 Score=38.51 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|++|.|+||+|.+|.+++..|+..|.
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~ 26 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGY 26 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCC
Confidence 35799999999999999999988764
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.82 Score=44.04 Aligned_cols=67 Identities=16% Similarity=-0.015 Sum_probs=40.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..||.|+|+ |.+|..++..|...+. .|.+ .+++.++.+ .+.++ . .+.....+..+.++++|+
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~Ga-----~V~v----~~r~~~~~~-~~~~~-----G--~~~~~~~~l~~~l~~aDi 213 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKALGA-----NVTV----GARKSAHLA-RITEM-----G--LSPFHLSELAEEVGKIDI 213 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC-----EEEE----EECCHHHHH-HHHHc-----C--CeeecHHHHHHHhCCCCE
Confidence 479999995 9999999999987663 2444 244433322 22211 1 111111234567899999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
||.+.
T Consensus 214 VI~t~ 218 (296)
T PRK08306 214 IFNTI 218 (296)
T ss_pred EEECC
Confidence 99975
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=2 Score=45.15 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=31.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.
T Consensus 372 k~vlItGas~giG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 416 (657)
T PRK07201 372 KVVLITGASSGIGRATAIKVAEAGA-----TVFL----VARNGEALDELVAEIR 416 (657)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHH
Confidence 5799999999999999999998774 2443 2445555554444443
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.54 E-value=3.9 Score=37.51 Aligned_cols=26 Identities=19% Similarity=0.073 Sum_probs=22.3
Q ss_pred CCEEEEEcCCC-chHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAG-MIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG-~VG~~la~~L~~~~l 121 (337)
.+++.|+||+| .+|.+++..|+..|.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~ 43 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGA 43 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCC
Confidence 35899999877 699999999998775
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.58 Score=46.01 Aligned_cols=73 Identities=26% Similarity=0.204 Sum_probs=49.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
...++|||+ |..+..-+..+.. +++- +.|.+ + +++++..+..+.++.+.. ...+....+..+++++||+
T Consensus 130 a~~laiIGa-G~qA~~ql~a~~~--v~~~-~~I~i--~--~r~~~~~e~~a~~l~~~~---~~~v~a~~s~~~av~~aDi 198 (330)
T COG2423 130 ASTLAIIGA-GAQARTQLEALKA--VRDI-REIRV--Y--SRDPEAAEAFAARLRKRG---GEAVGAADSAEEAVEGADI 198 (330)
T ss_pred CcEEEEECC-cHHHHHHHHHHHh--hCCc-cEEEE--E--cCCHHHHHHHHHHHHhhc---CccceeccCHHHHhhcCCE
Confidence 568999995 9888776666543 3321 22444 3 567778888777776543 2245555667899999999
Q ss_pred EEEe
Q 019713 176 ALLI 179 (337)
Q Consensus 176 VIit 179 (337)
|+.+
T Consensus 199 Ivt~ 202 (330)
T COG2423 199 VVTA 202 (330)
T ss_pred EEEe
Confidence 9865
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.52 E-value=3.9 Score=37.28 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=31.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhH
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL 149 (337)
+.+.|+||++.+|.+++..|+..|. .|.+ . +++.++++....++
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~-----~V~~--~--~r~~~~l~~~~~~i 49 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGA-----TLIL--C--DQDQSALKDTYEQC 49 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCC-----EEEE--E--cCCHHHHHHHHHHH
Confidence 5799999999999999999998875 2444 2 44556665544444
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.71 Score=46.28 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||.|||+ |.+|+.++..|+..|+
T Consensus 38 ~~~VlivG~-GGlG~~va~~La~~Gv 62 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLAAAGI 62 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 369999995 9999999999999998
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.44 E-value=1.8 Score=39.58 Aligned_cols=26 Identities=15% Similarity=0.048 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~ 31 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGA 31 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 36899999999999999999998775
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.73 Score=45.78 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 135 ~~~VlvvG~-GG~Gs~ia~~La~~Gv 159 (376)
T PRK08762 135 EARVLLIGA-GGLGSPAALYLAAAGV 159 (376)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 468999995 9999999999999997
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.35 E-value=3.4 Score=40.79 Aligned_cols=128 Identities=25% Similarity=0.167 Sum_probs=68.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe---cCccccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG---INPYELF 170 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~---t~~~eal 170 (337)
++-.+|+|+|+ |-+|....+.....+ + .|.. +++++++++ .+.+|- ....+. .+..+++
T Consensus 165 ~pG~~V~I~G~-GGlGh~avQ~Aka~g-a----~Via----~~~~~~K~e-~a~~lG-------Ad~~i~~~~~~~~~~~ 226 (339)
T COG1064 165 KPGKWVAVVGA-GGLGHMAVQYAKAMG-A----EVIA----ITRSEEKLE-LAKKLG-------ADHVINSSDSDALEAV 226 (339)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHcC-C----eEEE----EeCChHHHH-HHHHhC-------CcEEEEcCCchhhHHh
Confidence 34579999995 888877666655455 2 2433 356666664 344332 122222 1223444
Q ss_pred CC-CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc-hhHH-H-HHHHHCCCCCCCeEE-
Q 019713 171 ED-AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC-NTNA-L-ICLKNAPSIPAKNFH- 245 (337)
Q Consensus 171 ~d-ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv-d~~t-~-i~~k~s~~~p~kvIG- 245 (337)
++ +|+||.+++ + .-+....+.+ .+++.++.+++|- ..+. . +..-....+ ++.|
T Consensus 227 ~~~~d~ii~tv~-~---------------~~~~~~l~~l----~~~G~~v~vG~~~~~~~~~~~~~~li~~~~--~i~GS 284 (339)
T COG1064 227 KEIADAIIDTVG-P---------------ATLEPSLKAL----RRGGTLVLVGLPGGGPIPLLPAFLLILKEI--SIVGS 284 (339)
T ss_pred HhhCcEEEECCC-h---------------hhHHHHHHHH----hcCCEEEEECCCCCcccCCCCHHHhhhcCe--EEEEE
Confidence 43 999999875 2 1233344433 4678999999994 3322 1 111111111 4555
Q ss_pred -ecCchhHHHHHHHHHH
Q 019713 246 -ALTRLDENRAKCQLAL 261 (337)
Q Consensus 246 -~gT~LDs~R~~~~lA~ 261 (337)
.||.-|+..+-.+.++
T Consensus 285 ~~g~~~d~~e~l~f~~~ 301 (339)
T COG1064 285 LVGTRADLEEALDFAAE 301 (339)
T ss_pred ecCCHHHHHHHHHHHHh
Confidence 4567776655555444
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=91.33 E-value=1.1 Score=39.84 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=38.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+.++|+|||. |.-|.+-|..|-..++ .|.+-+..-..+.++++ ++. +++ .+..|+.+.||
T Consensus 3 ~~k~IAViGy-GsQG~a~AlNLrDSG~-----~V~Vglr~~s~s~~~A~------~~G-------f~v-~~~~eAv~~aD 62 (165)
T PF07991_consen 3 KGKTIAVIGY-GSQGHAHALNLRDSGV-----NVIVGLREGSASWEKAK------ADG-------FEV-MSVAEAVKKAD 62 (165)
T ss_dssp CTSEEEEES--SHHHHHHHHHHHHCC------EEEEEE-TTCHHHHHHH------HTT--------EC-CEHHHHHHC-S
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCC-----CEEEEecCCCcCHHHHH------HCC-------Cee-ccHHHHHhhCC
Confidence 3469999995 9999999999998887 25544322111111111 111 122 13468999999
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+|++..
T Consensus 63 vV~~L~ 68 (165)
T PF07991_consen 63 VVMLLL 68 (165)
T ss_dssp EEEE-S
T ss_pred EEEEeC
Confidence 998874
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.2 Score=46.88 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
||.|+||+|++|++++..|...+.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~ 24 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV 24 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC
Confidence 589999999999999999988764
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.79 Score=45.93 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.||.|||+ |.+|+.++..|+..|+
T Consensus 43 ~~VlviG~-GGlGs~va~~La~~Gv 66 (392)
T PRK07878 43 ARVLVIGA-GGLGSPTLLYLAAAGV 66 (392)
T ss_pred CCEEEECC-CHHHHHHHHHHHHcCC
Confidence 59999995 9999999999999997
|
|
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=91.10 E-value=1.5 Score=42.47 Aligned_cols=73 Identities=19% Similarity=0.177 Sum_probs=43.9
Q ss_pred CCCEEEEEcCC--CchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC
Q 019713 95 KMVNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 95 ~~~KI~IIGAa--G~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d 172 (337)
+-.||+++|-. ++|..+++..++.-|. .+.+ .. +...+.-......+++ ...+++++.+..++++|
T Consensus 149 ~g~~va~vGD~~~~~v~~Sl~~~~a~~g~-----~v~~--~~-P~~~~~~~~~~~~~~~----~G~~v~~~~d~~~a~~~ 216 (301)
T TIGR00670 149 DGLKIALVGDLKYGRTVHSLAEALTRFGV-----EVYL--IS-PEELRMPKEILEELKA----KGIKVRETESLEEVIDE 216 (301)
T ss_pred CCCEEEEEccCCCCcHHHHHHHHHHHcCC-----EEEE--EC-CccccCCHHHHHHHHH----cCCEEEEECCHHHHhCC
Confidence 34799999953 5899998888877654 2333 22 2211111111111111 22467788888899999
Q ss_pred CcEEEEe
Q 019713 173 AEWALLI 179 (337)
Q Consensus 173 ADvVIit 179 (337)
||+|...
T Consensus 217 aDvvyt~ 223 (301)
T TIGR00670 217 ADVLYVT 223 (301)
T ss_pred CCEEEEC
Confidence 9998774
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=91.09 E-value=7.3 Score=41.44 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=23.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
.-+.++|-|+||+|++|..++..|+...
T Consensus 116 f~~~k~VlVTGaTGFLGk~LlekLLr~~ 143 (605)
T PLN02503 116 FLRGKNFLITGATGFLAKVLIEKILRTN 143 (605)
T ss_pred hhcCCEEEEcCCchHHHHHHHHHHHHhC
Confidence 3456799999999999999999988643
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.82 Score=45.19 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=46.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc-----------------hhhHHHhHHHhHhhhccCCcc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-----------------SLQALEGVAMELEDSLFPLLR 158 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~-----------------~~~~l~g~a~DL~d~~~~~~~ 158 (337)
..||.|+|+ |.+|+.++..|+..|+- + +.| +|.|. ...|++..+..|.+.. |. .
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La~~Gvg-~---i~l--vD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n-p~-v 98 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLAGAGVG-H---ITI--IDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN-PD-V 98 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCC-e---EEE--EeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC-CC-c
Confidence 369999995 99999999999999983 2 444 44443 1234444444444332 21 1
Q ss_pred cEEEec-----C-cccccCCCcEEEEec
Q 019713 159 EVKIGI-----N-PYELFEDAEWALLIG 180 (337)
Q Consensus 159 ~v~i~t-----~-~~eal~dADvVIita 180 (337)
+++... + ..+-++++|+||.+.
T Consensus 99 ~v~~~~~~i~~~~~~~~~~~~DvVvd~~ 126 (355)
T PRK05597 99 KVTVSVRRLTWSNALDELRDADVILDGS 126 (355)
T ss_pred EEEEEEeecCHHHHHHHHhCCCEEEECC
Confidence 232211 1 134578999999875
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.86 Score=52.78 Aligned_cols=65 Identities=15% Similarity=0.041 Sum_probs=44.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..||++|| .|.||..+|..|+..|. .+.. + |++.++.+.. .+.. ........+..++||+
T Consensus 4 ~~~IGfIG-LG~MG~~mA~~L~~~G~-----~v~v--~--dr~~~~~~~l----~~~G------a~~~~s~~e~a~~adv 63 (1378)
T PLN02858 4 AGVVGFVG-LDSLSFELASSLLRSGF-----KVQA--F--EISTPLMEKF----CELG------GHRCDSPAEAAKDAAA 63 (1378)
T ss_pred CCeEEEEc-hhHHHHHHHHHHHHCCC-----eEEE--E--cCCHHHHHHH----HHcC------CeecCCHHHHHhcCCE
Confidence 46899999 69999999999998775 2433 3 4555555433 2211 2233456678889999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
||++.
T Consensus 64 Vi~~l 68 (1378)
T PLN02858 64 LVVVL 68 (1378)
T ss_pred EEEEc
Confidence 99864
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.65 Score=46.49 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
-++|+||| .|+||..++..+..-|.
T Consensus 116 gktvGIIG-~G~IG~~va~~l~a~G~ 140 (381)
T PRK00257 116 ERTYGVVG-AGHVGGRLVRVLRGLGW 140 (381)
T ss_pred cCEEEEEC-CCHHHHHHHHHHHHCCC
Confidence 36899999 59999999999876554
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.91 Score=44.27 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
||.|||+ |.+|..++..|+..|+
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gv 23 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGF 23 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcC
Confidence 6899995 9999999999999997
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.64 Score=49.12 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHH--hHHHhHhhhccCCcccEE-----EecCcc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE--GVAMELEDSLFPLLREVK-----IGINPY 167 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~--g~a~DL~d~~~~~~~~v~-----i~t~~~ 167 (337)
+..||+|+| +|.+|++++..|+..|+-. +.. +|.|.....+. |+..++.... ....++. ...+..
T Consensus 128 R~akVlVlG-~Gg~~s~lv~sL~~sG~~~----I~~--vd~D~v~SNlnRIgEl~e~A~~~-n~~v~v~~i~~~~~~dl~ 199 (637)
T TIGR03693 128 RNAKILAAG-SGDFLTKLVRSLIDSGFPR----FHA--IVTDAEEHALDRIHELAEIAEET-DDALLVQEIDFAEDQHLH 199 (637)
T ss_pred hcccEEEEe-cCchHHHHHHHHHhcCCCc----EEE--EeccccchhhhHHHHHHHHHHHh-CCCCceEeccCCcchhHH
Confidence 446999999 6999999999999999842 433 33443222222 1112222211 1111111 122346
Q ss_pred cccCCCcEEEEecccC
Q 019713 168 ELFEDAEWALLIGAKP 183 (337)
Q Consensus 168 eal~dADvVIitag~p 183 (337)
+.+++.|+||.++..|
T Consensus 200 ev~~~~DiVi~vsDdy 215 (637)
T TIGR03693 200 EAFEPADWVLYVSDNG 215 (637)
T ss_pred HhhcCCcEEEEECCCC
Confidence 8899999999987654
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.98 E-value=1.6 Score=42.87 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=46.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHh------------HhhhccCCcccEEEe
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME------------LEDSLFPLLREVKIG 163 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~D------------L~d~~~~~~~~v~i~ 163 (337)
++||+-||| |.||......++..- . .|++.++|+ +..+..++--| ..+|. ..+.-..
T Consensus 1 ~~kicciga-gyvggptcavia~kc--p---~i~vtvvd~--s~~ri~~wnsd~lpiyepgldevv~~cr---gknlffs 69 (481)
T KOG2666|consen 1 MVKICCIGA-GYVGGPTCAVIALKC--P---DIEVTVVDI--SVPRINAWNSDKLPIYEPGLDEVVKQCR---GKNLFFS 69 (481)
T ss_pred CceEEEecC-cccCCcchheeeecC--C---ceEEEEEec--CchHhhcccCCCCcccCCCHHHHHHHhc---CCceeee
Confidence 579999995 999987554443321 1 255555554 33332221111 11221 2345566
Q ss_pred cCcccccCCCcEEEEecccCC
Q 019713 164 INPYELFEDAEWALLIGAKPR 184 (337)
Q Consensus 164 t~~~eal~dADvVIitag~pr 184 (337)
+|-..+++.||+|++....|.
T Consensus 70 tdiekai~eadlvfisvntpt 90 (481)
T KOG2666|consen 70 TDIEKAIKEADLVFISVNTPT 90 (481)
T ss_pred cchHHHhhhcceEEEEecCCc
Confidence 777899999999999876664
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=90.89 E-value=5.4 Score=42.26 Aligned_cols=135 Identities=13% Similarity=0.071 Sum_probs=74.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecC-c-----cccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-P-----YELF 170 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~-~-----~eal 170 (337)
.+|.|+|. |.+|+.++..|...+. ++.+ +|.|+++.+. +++.. .++..++. + ...+
T Consensus 401 ~~vII~G~-Gr~G~~va~~L~~~g~-----~vvv----ID~d~~~v~~----~~~~g----~~v~~GDat~~~~L~~agi 462 (601)
T PRK03659 401 PQVIIVGF-GRFGQVIGRLLMANKM-----RITV----LERDISAVNL----MRKYG----YKVYYGDATQLELLRAAGA 462 (601)
T ss_pred CCEEEecC-chHHHHHHHHHHhCCC-----CEEE----EECCHHHHHH----HHhCC----CeEEEeeCCCHHHHHhcCC
Confidence 58999995 9999999999987765 2443 3555555542 22211 22333321 1 2457
Q ss_pred CCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEE-eCCCchhHHHHHHHHCCCCCCCeEEecCc
Q 019713 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIV-VGNPCNTNALICLKNAPSIPAKNFHALTR 249 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIv-vtNPvd~~t~i~~k~s~~~p~kvIG~gT~ 249 (337)
.+||.+|++-+.+ ..|.. ++..+++. .|+..++. +.||.+. ..+.+ . +.+ +++ --|.
T Consensus 463 ~~A~~vv~~~~d~-----------~~n~~----i~~~~r~~-~p~~~IiaRa~~~~~~--~~L~~-~-Ga~-~vv-~e~~ 520 (601)
T PRK03659 463 EKAEAIVITCNEP-----------EDTMK----IVELCQQH-FPHLHILARARGRVEA--HELLQ-A-GVT-QFS-RETF 520 (601)
T ss_pred ccCCEEEEEeCCH-----------HHHHH----HHHHHHHH-CCCCeEEEEeCCHHHH--HHHHh-C-CCC-EEE-ccHH
Confidence 7999988875321 33433 44455666 68766554 4455333 22333 3 332 222 2222
Q ss_pred hhHHHHHHHHHHHhCCCccccc
Q 019713 250 LDENRAKCQLALKAGVFYDKVS 271 (337)
Q Consensus 250 LDs~R~~~~lA~~lgv~~~~V~ 271 (337)
.-+.++-...=..+|++++++.
T Consensus 521 es~l~l~~~~L~~lg~~~~~~~ 542 (601)
T PRK03659 521 SSALELGRKTLVSLGMHPHQAQ 542 (601)
T ss_pred HHHHHHHHHHHHHcCCCHHHHH
Confidence 2234566666677888887774
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=90.87 E-value=4.1 Score=39.00 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=21.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
+.+.|+||++.||.+++..|+..|
T Consensus 4 k~vlITGas~GIG~aia~~L~~~G 27 (314)
T TIGR01289 4 PTVIITGASSGLGLYAAKALAATG 27 (314)
T ss_pred CEEEEECCCChHHHHHHHHHHHcC
Confidence 478999999999999999999877
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.81 E-value=1.1 Score=41.03 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++.|+||+|.||.+++..|+..|.
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~ 33 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGA 33 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC
Confidence 5799999999999999999998775
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=90.73 E-value=1 Score=44.90 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||.|||+ |.+|+.++..|+..|+
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~~Gv 65 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLASAGV 65 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 358999995 9999999999999887
|
|
| >PRK13529 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.70 E-value=0.52 Score=49.33 Aligned_cols=124 Identities=13% Similarity=0.088 Sum_probs=68.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHH----cCCCCCCCceEEEeccccc--hhh--HHHhHHHhHhhhccCCcc--cEEEecCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAA----GEVLGPDQPIALKLLGSER--SLQ--ALEGVAMELEDSLFPLLR--EVKIGINP 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~----~~l~~e~~~v~L~L~d~d~--~~~--~l~g~a~DL~d~~~~~~~--~v~i~t~~ 166 (337)
.||.|.|| |..|-++|..|.. .|+-.++-.-.+.++|..- ..+ .+......+.+...+... .-....+.
T Consensus 296 ~riv~~GA-GsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L 374 (563)
T PRK13529 296 QRIVFLGA-GSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISL 374 (563)
T ss_pred cEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCH
Confidence 59999995 9999999988876 4653211112445555431 011 122111222211101000 00011346
Q ss_pred ccccCCC--cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch---hHHHHHHHHC
Q 019713 167 YELFEDA--EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN---TNALICLKNA 236 (337)
Q Consensus 167 ~eal~dA--DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd---~~t~i~~k~s 236 (337)
.++++++ |+.|=+.+.| | .+-+++.+.|.++ ++..+|.-.|||.. ....-+++++
T Consensus 375 ~e~v~~~kPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~-~erPIIFaLSNPt~~aE~tpe~a~~~T 434 (563)
T PRK13529 375 LEVVRNVKPTVLIGVSGQP---G-----------AFTEEIVKEMAAH-CERPIIFPLSNPTSRAEATPEDLIAWT 434 (563)
T ss_pred HHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhc-CCCCEEEECCCcCCCcccCHHHHHHhh
Confidence 7899998 8887654433 2 1225667777777 67889999999974 4555555654
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.53 E-value=1.9 Score=42.37 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
++||+|+| .|+||...+..+....
T Consensus 3 kIRVgIVG-~GnIGr~~a~al~~~p 26 (324)
T TIGR01921 3 KIRAAIVG-YGNLGRSVEKAIQQQP 26 (324)
T ss_pred CcEEEEEe-ecHHHHHHHHHHHhCC
Confidence 48999999 5999999988887653
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.50 E-value=6.1 Score=36.76 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..+.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~ 31 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGA 31 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=90.48 E-value=2 Score=42.30 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=23.4
Q ss_pred CCEEEEE----cCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVS----GAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~II----GAaG~VG~~la~~L~~~~l 121 (337)
++||.|+ ||+|+||++++..|+..|.
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~ 81 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGH 81 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCC
Confidence 4689999 9999999999999998774
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.63 Score=45.08 Aligned_cols=95 Identities=20% Similarity=0.351 Sum_probs=53.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|+||| .|.||..+|..+..-|. .|. -+ ++.... .+ . . ....+..+.++.||+|
T Consensus 123 ktvgIiG-~G~IG~~vA~~l~afG~-----~V~--~~--~r~~~~-~~--------~-----~-~~~~~l~ell~~aDiv 177 (303)
T PRK06436 123 KSLGILG-YGGIGRRVALLAKAFGM-----NIY--AY--TRSYVN-DG--------I-----S-SIYMEPEDIMKKSDFV 177 (303)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCCC-----EEE--EE--CCCCcc-cC--------c-----c-cccCCHHHHHhhCCEE
Confidence 6999999 69999999987654343 132 22 332110 00 0 0 0112456778999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC--CCchhHHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG--NPCNTNAL 230 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt--NPvd~~t~ 230 (337)
++.... .+ +...++ | .+.++.. .|++++|+++ .++|.-+.
T Consensus 178 ~~~lp~--t~--~T~~li--~-------~~~l~~m-k~ga~lIN~sRG~~vd~~aL 219 (303)
T PRK06436 178 LISLPL--TD--ETRGMI--N-------SKMLSLF-RKGLAIINVARADVVDKNDM 219 (303)
T ss_pred EECCCC--Cc--hhhcCc--C-------HHHHhcC-CCCeEEEECCCccccCHHHH
Confidence 987521 11 111111 1 2334443 6899999988 45666554
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.87 Score=47.41 Aligned_cols=63 Identities=19% Similarity=0.146 Sum_probs=38.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|+||| .|.||..+|..|..-|. .|. .+|.....+. +.++ .+....+..+.+++||+|
T Consensus 139 ktvgIiG-~G~IG~~vA~~l~~fG~-----~V~--~~d~~~~~~~----~~~~---------g~~~~~~l~ell~~aDvV 197 (525)
T TIGR01327 139 KTLGVIG-LGRIGSIVAKRAKAFGM-----KVL--AYDPYISPER----AEQL---------GVELVDDLDELLARADFI 197 (525)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----EEE--EECCCCChhH----HHhc---------CCEEcCCHHHHHhhCCEE
Confidence 5899999 69999999999875443 132 2332111111 1111 112223456788999999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
++..
T Consensus 198 ~l~l 201 (525)
T TIGR01327 198 TVHT 201 (525)
T ss_pred EEcc
Confidence 9875
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.44 E-value=1.3 Score=47.55 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=22.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.||.+++..|+..|.
T Consensus 415 kvvLVTGasggIG~aiA~~La~~Ga 439 (676)
T TIGR02632 415 RVAFVTGGAGGIGRETARRLAAEGA 439 (676)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCC
Confidence 5799999999999999999998775
|
|
| >PTZ00317 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.52 Score=49.26 Aligned_cols=122 Identities=16% Similarity=0.059 Sum_probs=69.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHH----cCCCCCCCceEEEeccccc--hh---hHHHhHHHhHhhhccCCcccEEEecCcc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAA----GEVLGPDQPIALKLLGSER--SL---QALEGVAMELEDSLFPLLREVKIGINPY 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~----~~l~~e~~~v~L~L~d~d~--~~---~~l~g~a~DL~d~~~~~~~~v~i~t~~~ 167 (337)
.||.+.|| |..|-.+|..|.. .|+-.++-.-.+.++|..- .. +.+......+.+.... .......+..
T Consensus 298 ~riv~~GA-GsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~--~~~~~~~~L~ 374 (559)
T PTZ00317 298 QRIVFFGA-GSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDIS--AEDSSLKTLE 374 (559)
T ss_pred cEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccc--cccccCCCHH
Confidence 59999995 9999999988773 5653211112445555431 01 1121111212211100 0000123577
Q ss_pred cccCCC--cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc---hhHHHHHHHHC
Q 019713 168 ELFEDA--EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNA 236 (337)
Q Consensus 168 eal~dA--DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv---d~~t~i~~k~s 236 (337)
++++++ |+.|=+.+.| | .+-+++.+.|.++ ++..+|.-.|||. +....-+++++
T Consensus 375 e~v~~~KPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~-~~rPIIFaLSNPt~~aE~tpeda~~~T 433 (559)
T PTZ00317 375 DVVRFVKPTALLGLSGVG---G-----------VFTEEVVKTMASN-VERPIIFPLSNPTSKAECTAEDAYKWT 433 (559)
T ss_pred HHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhc-CCCCEEEECCCCCCCCCcCHHHHHhhc
Confidence 899999 9888655433 2 1235677778887 6888999999996 55555566654
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=1.2 Score=45.38 Aligned_cols=91 Identities=11% Similarity=0.093 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
.-.+|+|+|+ |.+|..++..+...|. .|.+ +| .++.++...+++ .. . + .+..++++++|
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga-----~ViV--~d--~dp~ra~~A~~~------G~--~--v-~~l~eal~~aD 269 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGA-----RVIV--TE--VDPICALQAAMD------GF--R--V-MTMEEAAELGD 269 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE--Ec--CCchhhHHHHhc------CC--E--e-cCHHHHHhCCC
Confidence 3468999995 9999999999887664 2443 33 333333211111 11 1 1 12346788999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
+||.+.|. ..++.. +.+... ++++++++++-+
T Consensus 270 VVI~aTG~---------------~~vI~~--~~~~~m-K~GailiNvG~~ 301 (425)
T PRK05476 270 IFVTATGN---------------KDVITA--EHMEAM-KDGAILANIGHF 301 (425)
T ss_pred EEEECCCC---------------HHHHHH--HHHhcC-CCCCEEEEcCCC
Confidence 99886532 223321 122232 578899998854
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.89 Score=41.55 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..+.
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~ 31 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGA 31 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998775
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.16 E-value=1.7 Score=39.82 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=22.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+.+.|+||+|.||.+++..|+..|.
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~ 35 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGC 35 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC
Confidence 5799999999999999999998775
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=90.07 E-value=5.5 Score=42.37 Aligned_cols=136 Identities=11% Similarity=0.018 Sum_probs=74.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecC-c-----cccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-P-----YELF 170 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~-~-----~eal 170 (337)
.+|.|+|. |.+|+.++..|...++ ++.+ +|.++++.+.. .+. ..++..++. + ...+
T Consensus 401 ~~vII~G~-Gr~G~~va~~L~~~g~-----~vvv----ID~d~~~v~~~----~~~----g~~v~~GDat~~~~L~~agi 462 (621)
T PRK03562 401 PRVIIAGF-GRFGQIVGRLLLSSGV-----KMTV----LDHDPDHIETL----RKF----GMKVFYGDATRMDLLESAGA 462 (621)
T ss_pred CcEEEEec-ChHHHHHHHHHHhCCC-----CEEE----EECCHHHHHHH----Hhc----CCeEEEEeCCCHHHHHhcCC
Confidence 58999995 9999999999988765 2443 35555555432 111 113333321 1 2457
Q ss_pred CCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEEecCch
Q 019713 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRL 250 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~L 250 (337)
.+||.||++-+.+ +.|.. ++..+++. .|+..+++-++-.+ ..+.+ +.. +.+ .+---+..
T Consensus 463 ~~A~~vvv~~~d~-----------~~n~~----i~~~ar~~-~p~~~iiaRa~d~~-~~~~L-~~~-Gad--~v~~e~~e 521 (621)
T PRK03562 463 AKAEVLINAIDDP-----------QTSLQ----LVELVKEH-FPHLQIIARARDVD-HYIRL-RQA-GVE--KPERETFE 521 (621)
T ss_pred CcCCEEEEEeCCH-----------HHHHH----HHHHHHHh-CCCCeEEEEECCHH-HHHHH-HHC-CCC--EEehhhHh
Confidence 7999988874321 34433 44445555 58776655443221 12222 223 332 22222333
Q ss_pred hHHHHHHHHHHHhCCCccccc
Q 019713 251 DENRAKCQLALKAGVFYDKVS 271 (337)
Q Consensus 251 Ds~R~~~~lA~~lgv~~~~V~ 271 (337)
.+.++-..+-+.+|+++++++
T Consensus 522 ~sl~l~~~~L~~lg~~~~~~~ 542 (621)
T PRK03562 522 GALKSGRLVLESLGLGPYEAR 542 (621)
T ss_pred HHHHHHHHHHHHcCCCHHHHH
Confidence 345666777777888876664
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.06 E-value=0.49 Score=43.37 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.||.+++..|+..|.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~ 34 (260)
T PRK06523 10 KRALVTGGTKGIGAATVARLLEAGA 34 (260)
T ss_pred CEEEEECCCCchhHHHHHHHHHCCC
Confidence 6899999999999999999998765
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=89.93 E-value=1 Score=36.26 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=17.9
Q ss_pred EEEEcCCCchHHHHHHHHHHcC
Q 019713 99 IAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~ 120 (337)
|.|+|. |.+|..++..|..++
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~ 21 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGG 21 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTT
T ss_pred eEEEcC-CHHHHHHHHHHHhCC
Confidence 679995 999999999998855
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=89.91 E-value=1.4 Score=41.20 Aligned_cols=23 Identities=35% Similarity=0.366 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
||.|+|+ |.+|..++..|+..|+
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gv 23 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGF 23 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCC
Confidence 6899995 9999999999999987
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.90 E-value=2.1 Score=39.82 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--cCcccccCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFED 172 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t~~~eal~d 172 (337)
+.++|.|||| |.|+..=+..|...+- .|.+ +..+.+++ +.. +.+. .+++.. .-..+++.+
T Consensus 24 ~~~~VLVVGG-G~VA~RK~~~Ll~~gA-----~VtV--Vap~i~~e-l~~----l~~~-----~~i~~~~r~~~~~dl~g 85 (223)
T PRK05562 24 NKIKVLIIGG-GKAAFIKGKTFLKKGC-----YVYI--LSKKFSKE-FLD----LKKY-----GNLKLIKGNYDKEFIKD 85 (223)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE--EcCCCCHH-HHH----HHhC-----CCEEEEeCCCChHHhCC
Confidence 3468999996 9999997888877653 2443 22232222 221 2211 123322 123467899
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC--chhHHH
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP--CNTNAL 230 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP--vd~~t~ 230 (337)
+++||.+-+.+ ..| +.+.+..++ .+.++.++.+| +|.+..
T Consensus 86 ~~LViaATdD~-----------~vN----~~I~~~a~~---~~~lvn~vd~p~~~dFi~P 127 (223)
T PRK05562 86 KHLIVIATDDE-----------KLN----NKIRKHCDR---LYKLYIDCSDYKKGLCIIP 127 (223)
T ss_pred CcEEEECCCCH-----------HHH----HHHHHHHHH---cCCeEEEcCCcccCeEEee
Confidence 99988864321 223 333333332 25567778888 444443
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.89 E-value=1.4 Score=40.54 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++.|+||+|.||.+++..|+..|.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~ 33 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGA 33 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 5789999999999999999998876
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.83 E-value=1.3 Score=38.93 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAG 119 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~ 119 (337)
|+|.|+||+|.+|.+++..|+..
T Consensus 1 ~~vlItGas~giG~~la~~l~~~ 23 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR 23 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc
Confidence 47999999999999999999876
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=89.82 E-value=1.1 Score=43.18 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
||.|||| |.+|..++..|+..|+
T Consensus 1 kVlVVGa-GGlG~eilknLal~Gv 23 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLALSGF 23 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCC
Confidence 6899995 9999999999999997
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.77 E-value=1.2 Score=46.48 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=38.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|+||| .|.||..+|..|..-|. .|. -+|.....+.. .++ . +... +..+.+++||+|
T Consensus 141 ktvgIiG-~G~IG~~vA~~l~~fG~-----~V~--~~d~~~~~~~~----~~~-----g----~~~~-~l~ell~~aDiV 198 (526)
T PRK13581 141 KTLGIIG-LGRIGSEVAKRAKAFGM-----KVI--AYDPYISPERA----AQL-----G----VELV-SLDELLARADFI 198 (526)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----EEE--EECCCCChhHH----Hhc-----C----CEEE-cHHHHHhhCCEE
Confidence 5899999 59999999999876543 232 33321111111 111 1 1222 456788999999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
++..
T Consensus 199 ~l~l 202 (526)
T PRK13581 199 TLHT 202 (526)
T ss_pred EEcc
Confidence 9875
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=89.77 E-value=1.2 Score=44.98 Aligned_cols=91 Identities=10% Similarity=0.101 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
.-.+|+|+|+ |.+|..++..+...|. .|.. +|.| +.++....+ +. . .+. +..++++++|
T Consensus 194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga-----~ViV--~d~d--p~r~~~A~~---~G---~----~v~-~leeal~~aD 252 (406)
T TIGR00936 194 AGKTVVVAGY-GWCGKGIAMRARGMGA-----RVIV--TEVD--PIRALEAAM---DG---F----RVM-TMEEAAKIGD 252 (406)
T ss_pred CcCEEEEECC-CHHHHHHHHHHhhCcC-----EEEE--EeCC--hhhHHHHHh---cC---C----EeC-CHHHHHhcCC
Confidence 4569999995 9999999998876554 2433 2333 333221111 11 1 111 2246789999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
+||.+.|. ..++.. +.+... ++++++++++-.
T Consensus 253 VVItaTG~---------------~~vI~~--~~~~~m-K~GailiN~G~~ 284 (406)
T TIGR00936 253 IFITATGN---------------KDVIRG--EHFENM-KDGAIVANIGHF 284 (406)
T ss_pred EEEECCCC---------------HHHHHH--HHHhcC-CCCcEEEEECCC
Confidence 99876432 233332 122232 578898888864
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.77 E-value=1.4 Score=40.77 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=21.9
Q ss_pred CEEEEEcC--CCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGA--AGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGA--aG~VG~~la~~L~~~~l 121 (337)
+++.|+|| ++-+|..++..|+..|.
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la~~G~ 34 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQEQGA 34 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHCCC
Confidence 57899998 68999999999998775
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.65 E-value=1.3 Score=40.59 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~ 32 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGA 32 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 36899999999999999999998775
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.60 E-value=0.99 Score=46.06 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.||.+++..|+..|.
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~ 294 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGD 294 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 46899999999999999999998875
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=89.54 E-value=6.5 Score=38.16 Aligned_cols=116 Identities=9% Similarity=0.013 Sum_probs=65.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhh--ccCCcccEEEe-------cCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS--LFPLLREVKIG-------INP 166 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~--~~~~~~~v~i~-------t~~ 166 (337)
...|.|+||.+-+|..+|+.++..+- .+++ .|++ .+-.+.-+-.+.+. ...+-.+++-. ..-
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~-----~~vl--~Din--~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGA-----KLVL--WDIN--KQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCC-----eEEE--Eecc--ccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHH
Confidence 45899999877799999999999885 2444 4443 22222222223321 00111111100 112
Q ss_pred ccccCCCcEEEEeccc-CCCCCC--chhh---hHHhh----HHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 167 YELFEDAEWALLIGAK-PRGPGM--ERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 167 ~eal~dADvVIitag~-prk~g~--~R~d---ll~~N----~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.++..+.|++|..||. |-++.+ ++.+ .++.| ..+.+.+.+.+.+. +++-|+.++
T Consensus 109 k~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~--~~GHIV~Ia 172 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLEN--NNGHIVTIA 172 (300)
T ss_pred HHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhc--CCceEEEeh
Confidence 4667899999998884 444443 2222 23333 45678888998884 555555554
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.53 E-value=0.76 Score=42.42 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..|.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~ 31 (258)
T PRK06398 7 KVAIVTGGSQGIGKAVVNRLKEEGS 31 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998775
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.51 E-value=6.5 Score=37.61 Aligned_cols=46 Identities=22% Similarity=0.178 Sum_probs=32.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
.+++.|+||+|.||.+++..|+..|. .|.+. .++.++++....++.
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G~-----~Vil~----~R~~~~~~~~~~~l~ 59 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAGA-----EVILP----VRNRAKGEAAVAAIR 59 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHH
Confidence 35899999999999999999998774 25442 345555554444443
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=89.43 E-value=0.78 Score=42.30 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+.++|+|.| .|+||++++..|...|.
T Consensus 22 ~g~~vaIqG-fGnVG~~~a~~L~~~G~ 47 (217)
T cd05211 22 EGLTVAVQG-LGNVGWGLAKKLAEEGG 47 (217)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCC
Confidence 347999999 69999999999998764
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.38 E-value=5.6 Score=38.08 Aligned_cols=103 Identities=22% Similarity=0.300 Sum_probs=60.5
Q ss_pred CCEEEEEcCCCch--------------------HHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhH-HHhHhhhcc
Q 019713 96 MVNIAVSGAAGMI--------------------ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV-AMELEDSLF 154 (337)
Q Consensus 96 ~~KI~IIGAaG~V--------------------G~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~-a~DL~d~~~ 154 (337)
++||+|-|| |+- |+++|...+..|. .++|. |.+.+-.+-. .--++|+
T Consensus 1 ~mkv~vyga-gnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGH-----DVVLa----ePn~d~~dd~~w~~vedA-- 68 (340)
T COG4007 1 MMKVAVYGA-GNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGH-----DVVLA----EPNRDIMDDEHWKRVEDA-- 68 (340)
T ss_pred CceEEEEcC-CccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCC-----cEEee----cCCccccCHHHHHHHHhc--
Confidence 478888885 752 6677777777664 26653 4443332211 1113332
Q ss_pred CCcccEEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHH
Q 019713 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC 232 (337)
Q Consensus 155 ~~~~~v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~ 232 (337)
.+++++||.++.+.+.+.|+.- | .| +....|.++|...+. .++ |+.|.|.+-...+
T Consensus 69 ----GV~vv~dD~eaa~~~Ei~VLFT--P--FG-------k~T~~Iarei~~hvp----EgA---VicnTCT~sp~vL 124 (340)
T COG4007 69 ----GVEVVSDDAEAAEHGEIHVLFT--P--FG-------KATFGIAREILEHVP----EGA---VICNTCTVSPVVL 124 (340)
T ss_pred ----CcEEecCchhhhhcceEEEEec--c--cc-------hhhHHHHHHHHhhCc----CCc---EecccccCchhHH
Confidence 4788899999999999987642 1 11 234566666666443 345 4677775544333
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=89.37 E-value=3.7 Score=41.18 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|||.|+|+ |.+|.+++..|...+.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~ 24 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN 24 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC
Confidence 58999996 9999999999987664
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=89.33 E-value=4.4 Score=36.39 Aligned_cols=25 Identities=20% Similarity=0.119 Sum_probs=22.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..|.|+||+|.+|.+++..|+..+.
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~ 26 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGY 26 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 4689999999999999999998764
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.32 E-value=1.6 Score=42.71 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=51.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
-++++||| .|.||..+|..+. + |+- .|. -++..++++. +.. + ..... +..+.++.||+
T Consensus 146 gktvGIiG-~GrIG~avA~r~~--~-Fgm--~v~--y~~~~~~~~~-~~~---~---------~~~y~-~l~ell~~sDi 203 (324)
T COG1052 146 GKTLGIIG-LGRIGQAVARRLK--G-FGM--KVL--YYDRSPNPEA-EKE---L---------GARYV-DLDELLAESDI 203 (324)
T ss_pred CCEEEEEC-CCHHHHHHHHHHh--c-CCC--EEE--EECCCCChHH-Hhh---c---------Cceec-cHHHHHHhCCE
Confidence 46999999 6999999999876 2 331 233 2333222111 100 0 01222 26688999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|++.... .+ ++|. + .|. +.+++. ++++++|+++=
T Consensus 204 i~l~~Pl--t~-~T~h-L--in~-------~~l~~m-k~ga~lVNtaR 237 (324)
T COG1052 204 ISLHCPL--TP-ETRH-L--INA-------EELAKM-KPGAILVNTAR 237 (324)
T ss_pred EEEeCCC--Ch-HHhh-h--cCH-------HHHHhC-CCCeEEEECCC
Confidence 9987521 11 1111 1 121 234443 68888888873
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=89.32 E-value=3.1 Score=43.31 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+..||.|+|| |.+|...+..+...|.
T Consensus 164 pg~kVlViGa-G~iGL~Ai~~Ak~lGA 189 (509)
T PRK09424 164 PPAKVLVIGA-GVAGLAAIGAAGSLGA 189 (509)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC
Confidence 4679999995 9999998887776664
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=89.26 E-value=2.1 Score=40.93 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..+|+|+|+ |.||+.++..|+..|+
T Consensus 30 ~s~VlVvG~-GGVGs~vae~Lar~GV 54 (268)
T PRK15116 30 DAHICVVGI-GGVGSWAAEALARTGI 54 (268)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999997
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.22 E-value=7.8 Score=35.08 Aligned_cols=25 Identities=24% Similarity=0.103 Sum_probs=22.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..+.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~ 27 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF 27 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC
Confidence 4689999999999999999998774
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.20 E-value=1.9 Score=39.29 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~ 40 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGA 40 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 35899999999999999999998775
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.18 E-value=1.2 Score=49.57 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||+|||+ |-+|+.++..|+..|+
T Consensus 332 ~srVlVvGl-GGlGs~ia~~LAraGV 356 (989)
T PRK14852 332 RSRVAIAGL-GGVGGIHLMTLARTGI 356 (989)
T ss_pred cCcEEEECC-cHHHHHHHHHHHHcCC
Confidence 369999995 9999999999999998
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 337 | ||||
| 1civ_A | 385 | Chloroplast Nadp-Dependent Malate Dehydrogenase Fro | 1e-128 | ||
| 7mdh_A | 375 | Structural Basis For Light Acitvation Of A Chloropl | 1e-128 | ||
| 1wze_A | 327 | Structural Basis For Alteration Of Cofactor Specifi | 2e-69 | ||
| 1iz9_A | 327 | Crystal Structure Of Malate Dehydrogenase From Ther | 2e-65 | ||
| 1bmd_A | 327 | Determinants Of Protein Thermostability Observed In | 3e-65 | ||
| 1bdm_A | 327 | The Structure At 1.8 Angstroms Resolution Of A Sing | 1e-64 | ||
| 1b8p_A | 329 | Malate Dehydrogenase From Aquaspirillum Arcticum Le | 8e-62 | ||
| 3d5t_A | 331 | Crystal Structure Of Malate Dehydrogenase From Burk | 8e-57 | ||
| 4mdh_A | 334 | Refined Crystal Structure Of Cytoplasmic Malate Deh | 7e-54 | ||
| 5mdh_A | 333 | Crystal Structure Of Ternary Complex Of Porcine Cyt | 7e-54 | ||
| 4h7p_A | 345 | Crystal Structure Of A Putative Cytosolic Malate De | 3e-50 | ||
| 3fi9_A | 343 | Crystal Structure Of Malate Dehydrogenase From Porp | 3e-14 | ||
| 1hyg_A | 313 | Crystal Structure Of Mj0490 Gene Product, The Famil | 3e-10 | ||
| 1a5z_A | 319 | Lactate Dehydrogenase From Thermotoga Maritima (tml | 2e-09 | ||
| 2hjr_A | 328 | Crystal Structure Of Cryptosporidium Parvum Malate | 1e-08 | ||
| 2d4a_A | 308 | Structure Of The Malate Dehydrogenase From Aeropyru | 3e-07 | ||
| 3gvh_A | 324 | Crystal Structure Of LactateMALATE DEHYDROGENASE FR | 7e-07 | ||
| 1gv0_A | 310 | Structural Basis For Thermophilic Protein Stability | 8e-07 | ||
| 3nep_X | 314 | 1.55a Resolution Structure Of Malate Dehydrogenase | 1e-06 | ||
| 1guy_A | 309 | Structural Basis For Thermophilic Protein Stability | 5e-06 | ||
| 1uxh_A | 309 | Large Improvement In The Thermal Stability Of A Tet | 8e-06 | ||
| 1uxi_A | 309 | Large Improvement In The Thermal Stability Of A Tet | 9e-06 | ||
| 1ur5_A | 309 | Stabilization Of A Tetrameric Malate Dehydrogenase | 1e-05 | ||
| 1gv1_A | 310 | Structural Basis For Thermophilic Protein Stability | 3e-05 | ||
| 3p7m_A | 321 | Structure Of Putative Lactate Dehydrogenase From Fr | 3e-05 | ||
| 1guz_A | 310 | Structural Basis For Thermophilic Protein Stability | 7e-05 | ||
| 3vku_A | 326 | Penta Mutant Of Lactobacillus Casei Lactate Dehydro | 3e-04 | ||
| 4e0b_A | 313 | 2.17 Angstrom Resolution Crystal Structure Of Malat | 4e-04 |
| >pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385 | Back alignment and structure |
|
| >pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast Enzyme. The Structure Of Sorghum Nadp-Malate Dehydrogenase In Its Oxidized Form Length = 375 | Back alignment and structure |
|
| >pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327 | Back alignment and structure |
|
| >pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327 | Back alignment and structure |
|
| >pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327 | Back alignment and structure |
|
| >pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327 | Back alignment and structure |
|
| >pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum Length = 329 | Back alignment and structure |
|
| >pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From Burkholderia Pseudomallei Length = 331 | Back alignment and structure |
|
| >pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate Dehydrogenase At 2.5-Angstroms Resolution Length = 334 | Back alignment and structure |
|
| >pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And Tnad At 2.4 Angstroms Resolution Length = 333 | Back alignment and structure |
|
| >pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345 | Back alignment and structure |
|
| >pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343 | Back alignment and structure |
|
| >pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313 | Back alignment and structure |
|
| >pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319 | Back alignment and structure |
|
| >pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328 | Back alignment and structure |
|
| >pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308 | Back alignment and structure |
|
| >pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324 | Back alignment and structure |
|
| >pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 | Back alignment and structure |
|
| >pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314 | Back alignment and structure |
|
| >pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309 | Back alignment and structure |
|
| >pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309 | Back alignment and structure |
|
| >pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309 | Back alignment and structure |
|
| >pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309 | Back alignment and structure |
|
| >pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 | Back alignment and structure |
|
| >pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321 | Back alignment and structure |
|
| >pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 | Back alignment and structure |
|
| >pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326 | Back alignment and structure |
|
| >pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375 | Back alignment and structure |
|---|
Score = 355 bits (912), Expect = e-122
Identities = 214/252 (84%), Positives = 234/252 (92%)
Query: 66 DPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPD 125
+ + DC+GVFC TYDLKAE++TKSWKK+VNIAVSGAAGMI+NHLLFKLA+GEV G D
Sbjct: 2 EAPATRKDCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQD 61
Query: 126 QPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRG 185
QPIALKLLGSERS QALEGVAMELEDSL+PLLREV IGI+PYE+FED +WALLIGAKPRG
Sbjct: 62 QPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRG 121
Query: 186 PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245
PGMERA LLDINGQIFA+QGKALNAVAS+NVKV+VVGNPCNTNALICLKNAP IPAKNFH
Sbjct: 122 PGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFH 181
Query: 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK 305
ALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+I+G PVKE+IK K
Sbjct: 182 ALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTK 241
Query: 306 WLEEGFTETIQK 317
WLEE FT T+QK
Sbjct: 242 WLEEEFTITVQK 253
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329 | Back alignment and structure |
|---|
Score = 321 bits (826), Expect = e-109
Identities = 116/226 (51%), Positives = 158/226 (69%), Gaps = 2/226 (0%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELED 151
K + +AV+GAAG I LLF++A G++LG DQP+ L+LL +E++ +AL+GV ME++D
Sbjct: 3 KTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDD 62
Query: 152 SLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
FPLL + +P F+DA+ ALL+GA+PRGPGMER LL+ N QIF QGKA++AV
Sbjct: 63 CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122
Query: 212 ASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
ASRN+KV+VVGNP NTNA I +K+APS+PAKNF A+ RLD NRA Q+A K G +
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIE 182
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
+ +WGNHS T D+ A+I+G VK++I D W + F T+ K
Sbjct: 183 KLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGK 228
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327 | Back alignment and structure |
|---|
Score = 318 bits (818), Expect = e-108
Identities = 120/224 (53%), Positives = 160/224 (71%), Gaps = 1/224 (0%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LL ++++ALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP + +NF A+TRLD NRAK QLA K G D++ M
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
T+WGNHS+T PD +A ++G P E++ D +W E+ F T+ +
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELV-DMEWYEKVFIPTVAQ 224
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333 | Back alignment and structure |
|---|
Score = 302 bits (776), Expect = e-102
Identities = 110/225 (48%), Positives = 141/225 (62%), Gaps = 4/225 (1%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 63
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L++V F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++V
Sbjct: 64 LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSV 123
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
KVIVVGNP NTN L K+APSIP +NF LTRLD NRAK Q+ALK GV D V N+ IW
Sbjct: 124 KVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIW 183
Query: 277 GNHSTTQVPDFLNARINGLP----VKEIIKDHKWLEEGFTETIQK 317
GNHS+TQ PD +A++ V E +KD WL+ F T+Q+
Sbjct: 184 GNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQ 228
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343 | Back alignment and structure |
|---|
Score = 237 bits (608), Expect = 1e-76
Identities = 62/225 (27%), Positives = 97/225 (43%), Gaps = 9/225 (4%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
+ + GAAGMI +++ A L P+ L L + LEGVA E+ F
Sbjct: 7 TEEKLTIVGAAGMIGSNMAQTAAMMR-LTPN----LCLY--DPFAVGLEGVAEEIRHCGF 59
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
L + + E DA++ + G PR GM R LL N +I A+ GK + +
Sbjct: 60 EGLN-LTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPD 118
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
VI++ NP + L+ L + + L LD R + +LA G+ V+N
Sbjct: 119 CKHVIIIFNPADITGLVTLIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTR 177
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVR 319
+G H A++NG P+ ++I K E + E Q+V
Sbjct: 178 TYGGHGEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVV 222
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 9e-12
Identities = 39/185 (21%), Positives = 76/185 (41%), Gaps = 17/185 (9%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+ A ++ + P+ ++ + DA+ ++I GA + PG R LL+ N
Sbjct: 38 AQAEAEDIAHAA-PVSHGTRVWHGGHSELADAQ--VVILTAGA-NQKPGESRLDLLEKNA 93
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
IF E + + + ++V NP + + + AP + T LD R +
Sbjct: 94 DIFRELVPQITRA-APDAVLLVTSNPVDLLTDLATQLAP----GQPVIGSGTVLDSARFR 148
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK--WLEEGFTET 314
+A AGV + G H ++V + +A + G+PV + ++ W E+ +
Sbjct: 149 HLMAQHAGVDGTHAHGYVL-GEHGDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKI 207
Query: 315 IQKVR 319
+ R
Sbjct: 208 DEGTR 212
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 3e-11
Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 23/188 (12%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L + + KI G N YE ++++ ++I G PR P M R+ LL +N
Sbjct: 52 QGKALDLNHCMALIGSPAKIFGENNYEYLQNSD--VVIITAGV-PRKPNMTRSDLLTVNA 108
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR-------LD 251
+I + + N VI + NP + + + IP N + LD
Sbjct: 109 KIVGSVAENV-GKYCPNAFVICITNPLDAMVYYFKEKS-GIP-AN-----KVCGMSGVLD 160
Query: 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGF 311
R +C L+ GV VS + + G H +P + I G+ + + ++ K
Sbjct: 161 SARFRCNLSRALGVKPSDVSAIVV-GGHGDEMIPLTSSVTIGGILLSDFVEQGKITHSQI 219
Query: 312 TETIQKVR 319
E I+K
Sbjct: 220 NEIIKKTA 227
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 1e-10
Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 13/183 (7%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G +++ +S + K G N Y E A+ ++I G PR PGM R LL IN
Sbjct: 45 QGKGLDIAESSPVDGFDAKFTGANDYAAIEGAD--VVIVTAGV-PRKPGMSRDDLLGINL 101
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
++ + G + A VI + NP + K + +P + LD R +
Sbjct: 102 KVMEQVGAGIKKYAP-EAFVICITNPLDAMVWALQKFS-GLP-AHKVVGMAGVLDSARFR 158
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
L+ + V + V+ + G H + VP + + G+P+ +++K ++ + IQ
Sbjct: 159 YFLSEEFNVSVEDVTVFVL-GGHGDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQ 217
Query: 317 KVR 319
+ R
Sbjct: 218 RTR 220
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 1e-10
Identities = 51/225 (22%), Positives = 91/225 (40%), Gaps = 22/225 (9%)
Query: 99 IAVSGAAGMI----ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
+ + GA+G + A L + +++ L+G E S+ LEG+ ++ D+L
Sbjct: 3 VTIIGASGRVGSATALLLAKEPFMKDLV---------LIGREHSINKLEGLREDIYDALA 53
Query: 155 PLLREVKIGINPYELFEDAEWALLI----GAKPRGPGMERAGLLDINGQIFAEQGKALNA 210
+ I + E + + ++ G PR GM R L N +I + K
Sbjct: 54 GTRSDANIYVESDENLRIIDESDVVIITSGV-PRKEGMSRMDLAKTNAKIVGKYAK--KI 110
Query: 211 VASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKV 270
+ K+ V+ NP + L ++ + F T LD R K +A GV D+V
Sbjct: 111 AEICDTKIFVITNPVDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEV 170
Query: 271 SNMTIWGNHSTTQVPDFLNARINGLPVKEIIK-DHKWLEEGFTET 314
I G H + VP I G+P+++ + ++E +
Sbjct: 171 RTRII-GEHGDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDV 214
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 1e-10
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 13/183 (7%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
G A++L + + K+ G N Y+ E+++ ++I G PR PGM R LL IN
Sbjct: 43 NGKALDLLQTCPIEGVDFKVRGTNDYKDLENSD--VVIVTAGV-PRKPGMSRDDLLGINI 99
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
++ G+ + N VI + NP + + K + +P N LD R +
Sbjct: 100 KVMQTVGEGIKHNCP-NAFVICITNPLDIMVNMLQKFS-GVP-DNKIVGMAGVLDSARFR 156
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
LA + V +V + G H T VP + + G+ +++++K+ K +E +
Sbjct: 157 TFLADELNVSVQQVQAYVM-GGHGDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVS 215
Query: 317 KVR 319
+ R
Sbjct: 216 RTR 218
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 6e-10
Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 8/181 (4%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+ G M+L+ + V++ Y DA L++ GA + PG R L+ N
Sbjct: 44 VRGDVMDLKHATPYSPTTVRVKAGEYSDCHDA--DLVVICAGA-AQKPGETRLDLVSKNL 100
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
+IF + A + +V NP + A K + + + T LD R +
Sbjct: 101 KIFKSIVGEVMAS-KFDGIFLVATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLL 159
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKV 318
L+ V V I G H T++P + +A I G P+K +++ + + +
Sbjct: 160 LSEAFDVAPRSVDAQII-GEHGDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQT 218
Query: 319 R 319
R
Sbjct: 219 R 219
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 7e-10
Identities = 42/183 (22%), Positives = 71/183 (38%), Gaps = 13/183 (7%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A+++ S+ K+ G + Y ++ ++I P P +R+ LL N
Sbjct: 42 QGKALDITHSMVMFGSTSKVIGTDDYADISGSD--VVIITASI-PGRPKDDRSELLFGNA 98
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
+I + + N VI + NP + K + +P N LD +R +
Sbjct: 99 RILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVS-GLP-HNKVCGMAGVLDSSRFR 155
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
+A GV VS I G H VP + + G+P+ IK +E E +
Sbjct: 156 TFIAQHFGVNASDVSANVI-GGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVC 214
Query: 317 KVR 319
R
Sbjct: 215 HTR 217
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 7e-10
Identities = 47/197 (23%), Positives = 83/197 (42%), Gaps = 17/197 (8%)
Query: 128 IALKLLGSERSL-----QALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI-- 179
+A + + E + +G A+++ +S + ++ G N Y ED++ + I
Sbjct: 19 VARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSD--VCIIT 76
Query: 180 -GAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPS 238
G PR PGM R LL N +I + + + +IVV NP + + + +
Sbjct: 77 AGL-PRSPGMSRDDLLAKNTEIVGGVTEQFVEGSP-DSTIIVVANPLDVMTYVAYEAS-G 133
Query: 239 IPA-KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV 297
P + LD R + +A + V V + + G H T VP + G+PV
Sbjct: 134 FPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLM-GGHGDTMVPLPRYTTVGGIPV 192
Query: 298 KEIIKDHKWLEEGFTET 314
++I D + +EE T
Sbjct: 193 PQLIDDAR-IEEIVERT 208
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 1e-09
Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 10/182 (5%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L ++L P KI Y +DA+ L++ GA P+ PG R L++ N
Sbjct: 47 TKGDAIDLSNAL-PFTSPKKIYSAEYSDAKDAD--LVVITAGA-PQKPGETRLDLVNKNL 102
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
+I + N +V NP + K + + + T LD R +
Sbjct: 103 KILKSIVDPIVDS-GFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQS 161
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL-EEGFTETIQK 317
+A V V + G H T+ P + +A I G+ + E +K H + E+ + +
Sbjct: 162 IAEMVNVDARSVHAYIM-GEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFED 220
Query: 318 VR 319
VR
Sbjct: 221 VR 222
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 1e-09
Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 23/203 (11%)
Query: 128 IALKLLGSERSL-----QALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI-- 179
+A K L E L +G A+++ +S L + K+ G N Y +++ ++I
Sbjct: 19 LAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSD--IVIIT 76
Query: 180 -GAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPS 238
G PR PGM R LL N I E + + N +IVV NP + + +
Sbjct: 77 AGL-PRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLDIMTHVAWVRS-G 133
Query: 239 IPAKN--FHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLP 296
+P K LD R + +A++ GV ++ + G H VP + G+P
Sbjct: 134 LP-KERVIGMAGVLDAARFRSFIAMELGVSMQDINACVL-GGHGDAMVPVVKYTTVAGIP 191
Query: 297 VKEIIKDHKWLEEGFTETIQKVR 319
+ +++ E + +++ R
Sbjct: 192 ISDLLP-----AETIDKLVERTR 209
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 1e-09
Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 9/181 (4%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++LED+ KI Y +DA+ L++ GA P+ PG R L++ N
Sbjct: 43 TKGDALDLEDAQ-AFTAPKKIYSGEYSDCKDAD--LVVITAGA-PQKPGESRLDLVNKNL 98
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
I + K + + +V NP + K + + + T LD +R +
Sbjct: 99 NILSSIVKPVVDS-GFDGIFLVAANPVDILTYATWKFSGFPKERVIGSGTSLDSSRLRVA 157
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKV 318
L + V V + G H ++ + A I PV+++ K+ ++ + V
Sbjct: 158 LGKQFNVDPRSVDAYIM-GEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGV 216
Query: 319 R 319
R
Sbjct: 217 R 217
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 1e-09
Identities = 41/176 (23%), Positives = 79/176 (44%), Gaps = 10/176 (5%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L + L +++I G N YE ++ +++ G R PGM R LL+ N
Sbjct: 37 QGEALDLAHAAAELGVDIRISGSNSYEDMRGSD--IVLVTAGI-GRKPGMTREQLLEANA 93
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
A+ + + A A + V++ NP + + K + LD R
Sbjct: 94 NTMADLAEKIKAYAK-DAIVVITTNPVDAMTYVMYKKTGFPRERVIGFSGILDSARMAYY 152
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTET 314
++ K GV + V+ + + G H P + + G+P++ ++ + +EE +ET
Sbjct: 153 ISQKLGVSFKSVNAIVL-GMHGQKMFPVPRLSSVGGVPLEHLMSKEE-IEEVVSET 206
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 2e-09
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 14/178 (7%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L ++ +V++ G N Y +++ +++ GA PR PGM R L+ +N
Sbjct: 40 QGKALDLYEASPIEGFDVRVTGTNNYADTANSD--VIVVTSGA-PRKPGMSREDLIKVNA 96
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
I ++ N +I+V NP + + + + P K LD R +
Sbjct: 97 DITRACISQAAPLSP-NAVIIMVNNPLDAMTYLAAEVS-GFP-KERVIGQAGVLDAARYR 153
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTET 314
+A++AGV + V M + G H VP + I+G+PV E I + L + T
Sbjct: 154 TFIAMEAGVSVEDVQAMLM-GGHGDEMVPLPRFSCISGIPVSEFIAPDR-LAQIVERT 209
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 2e-09
Identities = 43/202 (21%), Positives = 77/202 (38%), Gaps = 16/202 (7%)
Query: 128 IALKLLGSERSL-----QALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI--- 179
+AL + E L + + A ++ + P V + Y E A ++
Sbjct: 19 LALLGVAREVVLVDLDRKLAQAHAEDILHAT-PFAHPVWVWAGSYGDLEGAR--AVVLAA 75
Query: 180 GAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSI 239
G + PG R LLD N Q+FA+ + + ++V NP + + +
Sbjct: 76 GV-AQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPVDVMTQVAYALSGLP 133
Query: 240 PAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKE 299
P + + T LD R + LA V V + G H ++V + +A++ G+P+ E
Sbjct: 134 PGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVL-GEHGDSEVLVWSSAQVGGVPLLE 192
Query: 300 IIKD--HKWLEEGFTETIQKVR 319
+ E + VR
Sbjct: 193 FAEARGRALSPEDRARIDEGVR 214
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 3e-09
Identities = 36/177 (20%), Positives = 72/177 (40%), Gaps = 12/177 (6%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A+++ ++ + I G + Y D++ +++ G R PGM R L+ N
Sbjct: 48 KGKALDMLEASPVQGFDANIIGTSDYADTADSD--VVVITAGI-ARKPGMSRDDLVATNS 104
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAKC 257
+I + + + N ++V+ NP + K A P + LD R +
Sbjct: 105 KIMKSITRDIAKHSP-NAIIVVLTNPVDAMTYSVFKEA-GFPKERVIGQSGVLDTARFRT 162
Query: 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTET 314
+A + + ++ + G H VP + G+P++ +I + LE T
Sbjct: 163 FIAQELNLSVKDITGFVL-GGHGDDMVPLVRYSYAGGIPLETLIPKER-LEAIVERT 217
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 4e-09
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 14/184 (7%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
EG A++L P R I Y + ++ ++I G P+ PG R LL N
Sbjct: 38 AEGDALDLIHGT-PFTRRANIYAGDYADLKGSD--VVIVAAGV-PQKPGETRLQLLGRNA 93
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKNFHALTRLDENRAK 256
++ E + ++ + + VIVV NP + LK + P K F + T LD R +
Sbjct: 94 RVMKEIARNVSKY-APDSIVIVVTNPVDVLTYFFLKESGMD--PRKVFGSGTVLDTARLR 150
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH-KWLEEGFTETI 315
+A G V I G H ++VP + A I G+P++ + + K +
Sbjct: 151 TLIAQHCGFSPRSVHVYVI-GEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFA 209
Query: 316 QKVR 319
+K +
Sbjct: 210 EKTK 213
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 5e-09
Identities = 59/217 (27%), Positives = 88/217 (40%), Gaps = 35/217 (16%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL-----LGSERSL----QALEGVAM 147
+ +AV GAAG I G Q +AL L GSE SL GVA+
Sbjct: 1 MKVAVLGAAGGI--------------G--QALALLLKTQLPSGSELSLYDIAPVTPGVAV 44
Query: 148 ELEDSLFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQG 205
+L S P ++K G + E A+ L+ R PGM+R+ L ++N I
Sbjct: 45 DL--SHIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLV 102
Query: 206 KALNAVASRNVKVIVVGNPCNT---NALICLKNAPSIPAKNFHALTRLDENRAKCQLALK 262
+ + A + ++ NP NT A LK A +T LD R+ +A
Sbjct: 103 QQV-AKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAEL 161
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKE 299
G +V I G+ T +P L +++ G+ E
Sbjct: 162 KGKQPGEVEVPVIGGHSGVTILP--LLSQVPGVSFTE 196
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 6e-09
Identities = 43/194 (22%), Positives = 66/194 (34%), Gaps = 20/194 (10%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFP 155
+A+ GAAG I L + + L S L GV ++
Sbjct: 11 VAILGAAGGIGQPLAMLMK------------MNPLVSVLHLYDVVNAPGVTADISHMDTG 58
Query: 156 LLREVKIGI-NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
+ +G + ++ PR PGM R L IN I + + A
Sbjct: 59 AVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGI-AKCCP 117
Query: 215 NVKVIVVGNPCNT---NALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
V ++ NP N+ A K A + K +T LD RA +A G+ V
Sbjct: 118 RAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVD 177
Query: 272 NMTIWGNHSTTQVP 285
+ G+ T +P
Sbjct: 178 VPVVGGHAGVTILP 191
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 7e-09
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 13/184 (7%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
G M+L + VK YE +DA+ ++ GA + PG R L++ N
Sbjct: 43 AMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDAD--IVCICAGA-NQKPGETRLELVEKNL 99
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKNFHALTRLDENRAK 256
+IF + A + +V NP + K + P + + T LD R +
Sbjct: 100 KIFKGIVSEVMAS-GFDGIFLVATNPVDILTYATWKFSGLP--KERVIGSGTTLDSARFR 156
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL-EEGFTETI 315
L+ G V I G H T++P + +A + G+PV E+++ + +E + +
Sbjct: 157 FMLSEYFGAAPQNVCAHII-GEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIV 215
Query: 316 QKVR 319
V+
Sbjct: 216 DDVK 219
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 1e-08
Identities = 43/189 (22%), Positives = 68/189 (35%), Gaps = 19/189 (10%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI----GAKPRGPGMERAG----- 192
EG A++L + V + YE A + G + PG +
Sbjct: 47 EGKALDLSHVTSVVDTNVSVRAEYSYE--AALTGADCVIVTAGL-TKVPGKPDSEWSRND 103
Query: 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRL 250
LL N +I E G+ + +IVV NP + + + + +P N L
Sbjct: 104 LLPFNSKIIREIGQNIKK-YCPKTFIIVVTNPLDCMVKVMCEAS-GVP-TNMICGMACML 160
Query: 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEG 310
D R + +A V V I G H VP +NG P+++ IKD E+
Sbjct: 161 DSGRFRRYVADALSVSPRDVQATVI-GTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQ 219
Query: 311 FTETIQKVR 319
E + +
Sbjct: 220 LEEIAEHTK 228
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 1e-08
Identities = 48/226 (21%), Positives = 75/226 (33%), Gaps = 27/226 (11%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFP 155
+AV GA+G I L L L S +L GVA +L
Sbjct: 3 VAVLGASGGIGQPLSLLLK------------NSPLVSRLTLYDIAHTPGVAADLSHIETR 50
Query: 156 LLREVKIGI-NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
+ +G + + + ++ PR PGM R L + N I A A A
Sbjct: 51 ATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAAC-AQHCP 109
Query: 215 NVKVIVVGNPCNT---NALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
+ + ++ NP N+ K +T LD RA +A G+ +VS
Sbjct: 110 DAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVS 169
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
I G+ T +P ++ + T IQ+
Sbjct: 170 VPVIGGHAGKTIIPLISQCTPKVDFPQDQL-------STLTGRIQE 208
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 47/233 (20%), Positives = 76/233 (32%), Gaps = 27/233 (11%)
Query: 80 LTYDLKAEEETKSWKKMVNIAV--SGAAGM-IANHLLFKLAAGEVLGPDQPIALKLLGSE 136
L L +E +S+ K I V A GM A +L K A E +AL + +
Sbjct: 8 LIGHLATSQEPRSYNK---ITVVGCDAVGMADAISVLMKDLADE-------VALVDVMED 57
Query: 137 RSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLD 195
+ L+G M+LE L KI Y + ++ ++ + G R L+
Sbjct: 58 K----LKGEMMDLEHGS-LFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQ 112
Query: 196 INGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRA 255
N IF + S + + K + + + LD R
Sbjct: 113 RNVNIFKFIIPNIVKH-SPDCLKELHPELGTDKNKQDWKLSGLPMHRIIGSGCNLDSARF 171
Query: 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVK------EIIK 302
+ + + GV V I G H + + L E+IK
Sbjct: 172 RYLMGERLGVHSCLVIGWVI-GQHGDSVPSVWSGMWDAKLHKDVVDSAYEVIK 223
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 2e-08
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGM-----ERAGL 193
G A++ + K+ G N Y+ A+ ++I G + PG R L
Sbjct: 42 HGKALDTSHTNVMAYSNCKVSGSNTYDDLAGAD--VVIVTAGF-TKAPGKSDKEWNRDDL 98
Query: 194 LDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR---- 249
L +N +I E G + N +IVV NP + + +++ +P KN +
Sbjct: 99 LPLNNKIMIEIGGHIKK-NCPNAFIIVVTNPVDVMVQLLHQHS-GVP-KN-----KIIGL 150
Query: 250 ---LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW 306
LD +R K ++ K V V+ + G H V + G+P++E I +
Sbjct: 151 GGVLDTSRLKYYISQKLNVCPRDVNAHIV-GAHGNKMVLLKRYITVGGIPLQEFINNKLI 209
Query: 307 LEEGFTETIQKVR 319
+ +
Sbjct: 210 SDAELEAIFDRTV 222
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316 | Back alignment and structure |
|---|
Score = 54.0 bits (131), Expect = 2e-08
Identities = 41/182 (22%), Positives = 69/182 (37%), Gaps = 9/182 (4%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
G AM+ + V I Y+ DA L++ GA + PG R L+D N
Sbjct: 44 AIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDA--DLVVICAGA-NQKPGETRLDLVDKNI 100
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
IF +++ A +V NP + K + + + T LD R +
Sbjct: 101 AIFRSIVESVMAS-GFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFL 159
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL-EEGFTETIQK 317
L V V I G H T++P + A I +P++++++ ++
Sbjct: 160 LGEYFSVAPQNVHAYII-GEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVN 218
Query: 318 VR 319
VR
Sbjct: 219 VR 220
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 3e-08
Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 11/183 (6%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
G AM++ L P + ++ + Y +D + +++ GA R PG R L N
Sbjct: 45 AIGEAMDINHGL-PFMGQMSLYAGDYSDVKDCD--VIVVTAGA-NRKPGETRLDLAKKNV 100
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
I E + + + ++VV NP + + K + K + T LD R +
Sbjct: 101 MIAKEVTQNIMKY-YNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYL 159
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK--WLEEGFTETIQ 316
L+ K GV V I G H +Q+P + I G + E I D K + EE + +
Sbjct: 160 LSEKLGVDVKNVHGYII-GEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAE 218
Query: 317 KVR 319
V+
Sbjct: 219 DVK 221
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 7e-08
Identities = 39/185 (21%), Positives = 73/185 (39%), Gaps = 13/185 (7%)
Query: 142 LEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDIN 197
+E ++++ V I G + E+ DA+ +++ G + PG R L+
Sbjct: 45 VEAEVLDMQHGS-SFYPTVSIDGSDDPEICRDAD--MVVITAGP-RQKPGQSRLELVGAT 100
Query: 198 GQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKC 257
I L V + N +++ NP + + K + F + T LD R +
Sbjct: 101 VNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLTGLPENQIFGSGTNLDSARLRF 159
Query: 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH---KWLEEGFTET 314
+A + GV V G H ++VP + +A I G+P+ + + E
Sbjct: 160 LIAQQTGVNVKNVHAYIA-GEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEI 218
Query: 315 IQKVR 319
Q+V+
Sbjct: 219 HQEVK 223
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 1e-07
Identities = 38/187 (20%), Positives = 72/187 (38%), Gaps = 18/187 (9%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
L+G M+L+ L + Y + +++ L+I GA + G R L+ N
Sbjct: 57 LKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSK--LVIITAGA-RQQEGESRLNLVQRNV 113
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKN--FHALTRLDENR 254
IF + S K+++V NP + + K + P KN + LD R
Sbjct: 114 NIFKFIIPNVVKY-SPQCKLLIVSNPVDILTYVAWKISGFP----KNRVIGSGCNLDSAR 168
Query: 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD--HKWLEEGFT 312
+ + + GV + G H + VP + + G+ +K + +E +
Sbjct: 169 FRYLMGERLGVHPLSCHGWVL-GEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWK 227
Query: 313 ETIQKVR 319
+ ++V
Sbjct: 228 DVHKQVV 234
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-07
Identities = 41/225 (18%), Positives = 75/225 (33%), Gaps = 29/225 (12%)
Query: 99 IAVSGAAGMI----ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
++V GAAG + ++ + A EV+ D P G A + +
Sbjct: 3 VSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDT---------VGQAADTNHGI- 52
Query: 155 PLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
++ YE ++ +++ G PR PG R L N I + +L+
Sbjct: 53 AYDSNTRVRQGGYEDTAGSD--VVVITAGI-PRQPGQTRIDLAGDNAPIMEDIQSSLDEH 109
Query: 212 ASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAKCQLALKAGVFYDK 269
+ + + NP + + A + RLD R + L+ +
Sbjct: 110 -NDDYISLTTSNPVDLLNRHLYE-AGDRS-REQVIGFGGRLDSARFRYVLSEEFDAPVQN 166
Query: 270 VSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTET 314
V + G H QVP F ++G + E+ +
Sbjct: 167 VEGTIL-GEHGDAQVPVFSKVSVDGTDPEF---SGDEKEQLLGDL 207
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 5e-07
Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 13/184 (7%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEW----ALLIGAKPRGPGMERAGLLDIN 197
++ ++ +D++ L I IN + DA+ I + P +R L
Sbjct: 39 VKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFT 98
Query: 198 GQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKNFHALTRLDENRA 255
+ G L + ++V+ NP + + P K T LD R
Sbjct: 99 SSMVQSVGTNLKES-GFHGVLVVISNPVDVITALFQHVTGFP--AHKVIGTGTLLDTARM 155
Query: 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETI 315
+ + + VS + G H +Q + R+ G P+ +
Sbjct: 156 QRAVGEAFDLDPRSVSGYNL-GEHGNSQFVAWSTVRVMGQPIVTLADAGD---IDLAAIE 211
Query: 316 QKVR 319
++ R
Sbjct: 212 EEAR 215
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 3e-06
Identities = 31/221 (14%), Positives = 58/221 (26%), Gaps = 27/221 (12%)
Query: 86 AEEETKSWKKMVNIAV--SGAAGM-IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQAL 142
A E K+ K I V G G+ + K A ++ D +
Sbjct: 7 ANHENKTVNK---ITVVGGGELGIACTLAISAKGIADRLVLLDLS------------EGT 51
Query: 143 EGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFA 202
+G M+LE P ++ ++ G ++ N +F
Sbjct: 52 KGATMDLEIFNLP----NVEISKDLSASAHSK-VVIFTVNSLGSSQSYLDVVQSNVDMFR 106
Query: 203 EQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALK 262
AL S++ ++V P + K + + LD R + +
Sbjct: 107 ALVPALGHY-SQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNV 165
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD 303
I G +V + +
Sbjct: 166 LKAQTSGKEVWVI-GEQGEDKVLTWSGQ--EEVVSHTSQVQ 203
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 1e-05
Identities = 41/166 (24%), Positives = 63/166 (37%), Gaps = 15/166 (9%)
Query: 142 LEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDIN 197
G AM+L + + + KI G Y L + +E +++ G R PGM R L N
Sbjct: 38 AVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSE--IIVVTAGL-ARKPGMTRLDLAHKN 94
Query: 198 GQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRA 255
I + K + + K++VV NP + I K P +N F +LD R
Sbjct: 95 AGIIKDIAKKIVEN-APESKILVVTNPMDVMTYIMWK-ESGKP-RNEVFGMGNQLDSQRL 151
Query: 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEII 301
K +L + I G H + A +G E +
Sbjct: 152 KERLYNAGAR---NIRRAWIIGEHGDSMFVAKSLADFDGEVDWEAV 194
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 337 | |||
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 100.0 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 100.0 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 100.0 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 100.0 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 100.0 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 100.0 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 100.0 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 100.0 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 100.0 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 100.0 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 100.0 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 100.0 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 100.0 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 100.0 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 100.0 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 100.0 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 100.0 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 100.0 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 100.0 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 100.0 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 100.0 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 100.0 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 100.0 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 100.0 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 100.0 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 100.0 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 100.0 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 100.0 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 100.0 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 100.0 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 100.0 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 100.0 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 100.0 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 100.0 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 100.0 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 100.0 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 100.0 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 100.0 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 99.98 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 99.98 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 99.97 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 99.97 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 99.96 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 99.95 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 99.94 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 98.97 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 98.76 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 98.52 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 98.52 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 98.47 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 98.42 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 98.4 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 98.39 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 98.37 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.28 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 98.19 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 98.16 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 98.09 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 98.08 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 98.07 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 98.06 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 98.02 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 98.0 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 98.0 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 97.96 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 97.96 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 97.84 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 97.83 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 97.81 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 97.81 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 97.77 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 97.76 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.73 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 97.73 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.72 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 97.71 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 97.7 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 97.69 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.68 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 97.68 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 97.64 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 97.64 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 97.64 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 97.64 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.63 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 97.62 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 97.61 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.61 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 97.6 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 97.6 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 97.58 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 97.58 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 97.57 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 97.57 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 97.57 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 97.56 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 97.56 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 97.55 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 97.53 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 97.52 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 97.49 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 97.48 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 97.47 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 97.45 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 97.44 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 97.43 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 97.43 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.42 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 97.41 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 97.4 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 97.39 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 97.38 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 97.38 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 97.37 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 97.37 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 97.35 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 97.35 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 97.35 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 97.34 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.31 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 97.3 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 97.3 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 97.29 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.29 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 97.27 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.24 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 97.22 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 97.19 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 97.17 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 97.16 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 97.15 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.14 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 97.06 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 97.04 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 97.01 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 97.01 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 97.01 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 96.98 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 96.97 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.97 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.97 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 96.96 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 96.96 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 96.96 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 96.94 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 96.93 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 96.93 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 96.91 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 96.9 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 96.88 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 96.87 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 96.87 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 96.86 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 96.85 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 96.83 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 96.82 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 96.82 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 96.82 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 96.81 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 96.8 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 96.8 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 96.8 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 96.79 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 96.75 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 96.74 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 96.73 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 96.73 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 96.71 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.7 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.7 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 96.7 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 96.69 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 96.67 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 96.65 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 96.64 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 96.63 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 96.61 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 96.61 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 96.6 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 96.59 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 96.58 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.57 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.57 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 96.55 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 96.55 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 96.55 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 96.53 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 96.52 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 96.52 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.52 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 96.52 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 96.51 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 96.49 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 96.49 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 96.46 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 96.44 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 96.44 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 96.43 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 96.42 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.41 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 96.4 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 96.4 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 96.39 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 96.39 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 96.37 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 96.36 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 96.36 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 96.32 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 96.31 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 96.3 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 96.3 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 96.29 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 96.29 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 96.29 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 96.28 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 96.27 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 96.27 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 96.27 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 96.26 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 96.26 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 96.25 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 96.25 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 96.22 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 96.21 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 96.21 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 96.19 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 96.19 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 96.19 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 96.18 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 96.16 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.16 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 96.15 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 96.15 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 96.14 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 96.13 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 96.12 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 96.12 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 96.11 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 96.1 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 96.1 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 96.08 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 96.08 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 96.08 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 96.07 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 96.07 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 96.07 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 96.06 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 96.06 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 96.06 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 96.05 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 96.05 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 96.04 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 96.04 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 96.04 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 96.03 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 96.03 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 96.02 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 96.01 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 96.01 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 96.01 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 96.0 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 95.99 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 95.99 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 95.99 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 95.98 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 95.97 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 95.97 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 95.96 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 95.96 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 95.96 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 95.95 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 95.95 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 95.94 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 95.94 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 95.94 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 95.93 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.91 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 95.91 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 95.9 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 95.9 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 95.9 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 95.89 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 95.89 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 95.88 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 95.88 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 95.88 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 95.87 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 95.86 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 95.86 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 95.86 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 95.85 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 95.82 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 95.82 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 95.8 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.8 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 95.8 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 95.78 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 95.76 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 95.75 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.73 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 95.72 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 95.71 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 95.71 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 95.7 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 95.7 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 95.69 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 95.69 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 95.68 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 95.68 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 95.68 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 95.67 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 95.66 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 95.65 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 95.65 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 95.65 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 95.64 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 95.64 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 95.63 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 95.63 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 95.63 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 95.62 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 95.61 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 95.61 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 95.61 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 95.6 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 95.59 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.58 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.57 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 95.57 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 95.57 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 95.56 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 95.55 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 95.54 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 95.54 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 95.54 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 95.53 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 95.53 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 95.52 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 95.51 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 95.51 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 95.5 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 95.5 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 95.49 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 95.49 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 95.48 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 95.47 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 95.46 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 95.44 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 95.43 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 95.41 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 95.41 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 95.4 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 95.39 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 95.38 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 95.38 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.38 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 95.37 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 95.37 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 95.36 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 95.35 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 95.34 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 95.34 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 95.33 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 95.33 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 95.33 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 95.29 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 94.28 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 95.28 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 95.27 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 95.27 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 95.26 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 95.25 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 95.25 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 95.24 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.23 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 95.21 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 95.21 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 95.2 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 95.19 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 95.19 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 95.19 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 95.19 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 95.18 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 95.17 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 95.16 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 95.14 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 95.14 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 95.13 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 95.1 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 95.09 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 95.08 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 95.07 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 95.07 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 95.06 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 95.06 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 95.05 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 95.0 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 94.98 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 94.93 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 94.91 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 94.91 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 94.9 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 94.9 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 94.89 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 94.88 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 94.88 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 94.88 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 94.86 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 94.86 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 94.81 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 94.78 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 94.77 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 94.77 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 94.76 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 94.75 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 94.75 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 94.71 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 94.71 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 94.71 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 94.69 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 94.65 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 94.63 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 94.6 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 94.56 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 94.52 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 94.48 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 94.42 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 94.39 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 94.37 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 94.34 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 94.34 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 94.3 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 94.27 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 94.24 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 94.24 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 94.2 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 94.17 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 94.15 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 94.13 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 94.12 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 94.08 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 94.07 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 94.06 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 94.03 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 93.99 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 93.98 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 93.95 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 93.9 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 93.89 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 93.88 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 93.77 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 93.77 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 93.75 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 93.71 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 93.67 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 93.67 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 93.63 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 93.61 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 93.59 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 93.55 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 93.52 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 93.52 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 93.5 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 93.47 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 93.44 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 93.39 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 93.37 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 93.33 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 93.31 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 93.29 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 93.26 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 93.26 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 93.25 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 93.18 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 93.16 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 93.13 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 93.12 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 93.1 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 93.06 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 93.0 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 92.99 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 92.98 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 92.96 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 92.94 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 92.92 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 92.91 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 92.89 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 92.89 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 92.84 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 92.83 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 92.82 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 92.82 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 92.76 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 92.73 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 92.73 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 92.72 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 92.71 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 92.7 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 92.69 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 92.66 |
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-66 Score=509.36 Aligned_cols=258 Identities=83% Similarity=1.278 Sum_probs=229.8
Q ss_pred CCcCCCCccceeeeeeeccchhhhhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHH
Q 019713 67 PKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA 146 (337)
Q Consensus 67 ~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a 146 (337)
++.|..+||||||++|++++|...++|++++||+||||+|+||+++++.|+.++++++++++.|+|+|++.++++++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~a 82 (375)
T 7mdh_A 3 APATRKDCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVA 82 (375)
T ss_dssp ------CCCGGGCC------------CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHH
T ss_pred CccccccceeEEEEEeechhhhhHhhCCCCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHH
Confidence 34556899999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HhHhhhccCCcccEEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 147 MELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 147 ~DL~d~~~~~~~~v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
|||+|+.++++.++.+++++|++++|||+||+++|.||||||+|.||+..|++|++++++.|+++++|+++||++|||+|
T Consensus 83 mDL~h~~~p~~~~v~i~~~~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD 162 (375)
T 7mdh_A 83 MELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN 162 (375)
T ss_dssp HHHHTTTCTTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred HhHHhhhhhhcCCcEEecCCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchh
Confidence 99999987777788888899999999999999999999999999999999999999999999998789999999999999
Q ss_pred hHHHHHHHHCCCCCCCeEEecCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhccc
Q 019713 227 TNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW 306 (337)
Q Consensus 227 ~~t~i~~k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~ 306 (337)
+||++++|+++.+|+|+||++|.||++|++++||+++|++|.+|++++||||||+||||+||+++|+|+|+.+++.++.|
T Consensus 163 ~~t~ia~k~sg~~~~rvig~gT~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHgdt~vp~~S~a~V~G~pl~~~~~~~~~ 242 (375)
T 7mdh_A 163 TNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKW 242 (375)
T ss_dssp HHHHHHHHTCTTSCGGGEEECCHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTCCCHHH
T ss_pred HHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhcccceEEecCCCceeeeeecccCCCEEhhHhccchhh
Confidence 99999999998888899999999999999999999999999999987899999999999999999999999999988789
Q ss_pred chHHHHHHHHhccCcccc
Q 019713 307 LEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 307 ~~~e~~~~v~~~g~~~~~ 324 (337)
+.++|.++|+++|+++-.
T Consensus 243 ~~~~i~~~v~~~g~eII~ 260 (375)
T 7mdh_A 243 LEEEFTITVQKRGGALIQ 260 (375)
T ss_dssp HHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 889999999999987643
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-55 Score=422.81 Aligned_cols=229 Identities=47% Similarity=0.699 Sum_probs=209.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
.++.||+|+||+|+||+++++.|+++++++.++.+.|+|+|++...++++|++|||+|+.+++..++.++++++++++||
T Consensus 22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~a 101 (345)
T 4h7p_A 22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGV 101 (345)
T ss_dssp CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTC
T ss_pred CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCC
Confidence 44579999998899999999999999999988899999999988888999999999999988888888999999999999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCC-CCCCeEEecCchhH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPS-IPAKNFHALTRLDE 252 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~-~p~kvIG~gT~LDs 252 (337)
|+||+++|.||||||+|.||+..|++|++++++.|+++|+|+++|+++|||+|++++++++++++ +++|+||++|.||+
T Consensus 102 dvVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~~~~~g~~~~r~i~~~t~LDs 181 (345)
T 4h7p_A 102 AIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKSAQGKLNPRHVTAMTRLDH 181 (345)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHHTTTCSCGGGEEECCHHHH
T ss_pred CEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHHHHccCCCCcceeeeccchhH
Confidence 99999999999999999999999999999999999999889999999999999999999997755 45689999999999
Q ss_pred HHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCccc
Q 019713 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDN 323 (337)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~ 323 (337)
+|++++||+++|++|.+|++++||||||+||||+||+++|+|+|+.+++.+ +|..+++.++++++|++.-
T Consensus 182 ~R~~~~la~~~~v~~~~V~~~~V~G~HG~t~vp~~s~a~v~g~~~~~~~~~-~~~~~~~~~~v~~~g~eIi 251 (345)
T 4h7p_A 182 NRALSLLARKAGVPVSQVRNVIIWGNHSSTQVPDTDSAVIGTTPAREAIKD-DALDDDFVQVVRGRGAEII 251 (345)
T ss_dssp HHHHHHHHHHHTSCGGGEECCEEEBCSSTTCEEECTTCEETTEEGGGGCCC-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcChhheecceeecCCCCeEEeeeccceECCccHHHhcch-hhHHHHHHHHHHhhhhhhh
Confidence 999999999999999999987899999999999999999999999998854 5667789999999888763
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-53 Score=407.73 Aligned_cols=229 Identities=47% Similarity=0.707 Sum_probs=210.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+++||+|+||+|+||+++++.|+.++++++++++.|+|+|++..+++++|+++||+|+.+++..++.++++++++++|||
T Consensus 2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daD 81 (333)
T 5mdh_A 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD 81 (333)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCC
Confidence 56899999988999999999999999999999999999998766789999999999987677777888888899999999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCe-EEEEeCCCchhHHHHHHHHCCCCCCCeEEecCchhHH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV-KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDEN 253 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~a-ivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~LDs~ 253 (337)
+||++||.||+|||+|.|++..|+++++++++.|+++ +|++ ++|++|||+|++|++++++++++|+++||++|.||++
T Consensus 82 vVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~-~~~~~~vivvsNPvd~~t~~~~~~~~~~p~~~ig~~t~LDs~ 160 (333)
T 5mdh_A 82 VAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKY-AKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHN 160 (333)
T ss_dssp EEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHH-SCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHHH
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEcCCchHHHHHHHHHHcCCCCcCEEEEEEhHHHH
Confidence 9999999999999999999999999999999999999 5765 7999999999999999999878888899999999999
Q ss_pred HHHHHHHHHhCCCcccccceEEEeccCCCcccccccceE--cCeeh--hhhhhhcccchHHHHHHHHhccCcccc
Q 019713 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI--NGLPV--KEIIKDHKWLEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 254 R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V--~G~pl--~e~i~~~~~~~~e~~~~v~~~g~~~~~ 324 (337)
|++++||+++|++|++|++.+||||||+||||+||+++| +|.|+ .+++.++.|+.++|.++++++|++.-.
T Consensus 161 R~~~~la~~l~v~~~~v~~~vV~GeHgds~vp~~S~a~v~i~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~ 235 (333)
T 5mdh_A 161 RAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK 235 (333)
T ss_dssp HHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHeeecEEEEcCCCCEEEeeeccEeccCCeeccHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999855799999999999999986 68754 588877788888999999999987644
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=391.13 Aligned_cols=218 Identities=22% Similarity=0.277 Sum_probs=182.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
++++||+|||| |.||+++++.|+.++++++ + +|+| .++++++|+++||+|+. ++..+++++++++++++||
T Consensus 7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~e---l--~l~D--~~~~k~~g~a~DL~~~~-~~~~~~~i~~~~~~a~~~a 77 (326)
T 3vku_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQE---I--GIVD--IFKDKTKGDAIDLEDAL-PFTSPKKIYSAEYSDAKDA 77 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSE---E--EEEC--SCHHHHHHHHHHHHTTG-GGSCCCEEEECCGGGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCe---E--EEEe--CChHHHHHHHhhHhhhh-hhcCCcEEEECcHHHhcCC
Confidence 45689999995 9999999999999999764 4 4444 46789999999999987 4445677778899999999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs 252 (337)
|+||+++|.||+|||+|.||+.+|++|++++++.|+++ +|+++++++|||+|++|++++|.+ ++|+ |+||.||.||+
T Consensus 78 DiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~ilvvtNPvdi~t~~~~k~~-g~p~~rviG~gt~LD~ 155 (326)
T 3vku_A 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANPVDILTYATWKLS-GFPKNRVVGSGTSLDT 155 (326)
T ss_dssp SEEEECCCCC----------------CHHHHHHHHHTT-TCCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHHH
T ss_pred CEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEccCchHHHHHHHHHhc-CCCHHHeeeecccCcH
Confidence 99999999999999999999999999999999999998 799999999999999999999987 6776 78899999999
Q ss_pred HHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhh----cccchHHHHHHHHhccCccc
Q 019713 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD----HKWLEEGFTETIQKVRLVDN 323 (337)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~----~~~~~~e~~~~v~~~g~~~~ 323 (337)
+|++++||+++|+++++|++ +||||||+||||+||+++|+|+|+.+++.+ ++|..++|.++++++|++.-
T Consensus 156 ~R~~~~la~~lgv~~~~V~~-~ViGeHGdt~vp~~S~a~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi 229 (326)
T 3vku_A 156 ARFRQSIAKMVNVDARSVHA-YIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEII 229 (326)
T ss_dssp HHHHHHHHHHHTSCGGGEEC-CEEBSSSTTCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHCeE-EEEcCCCCeeEEeeeccccCCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 899999999999999999999999999876 46888999999999998764
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-50 Score=385.41 Aligned_cols=219 Identities=21% Similarity=0.305 Sum_probs=197.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCc-ccEEEecCcccccC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELFE 171 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~t~~~eal~ 171 (337)
+++++||+|||| |.||+++++.|+.++++++ +. |+| .++++++|+++||+|+. ++. .++.++++++++++
T Consensus 2 ~~~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~---l~--l~D--~~~~k~~g~a~DL~~~~-~~~~~~v~i~~~~~~a~~ 72 (326)
T 3pqe_A 2 NKHVNKVALIGA-GFVGSSYAFALINQGITDE---LV--VID--VNKEKAMGDVMDLNHGK-AFAPQPVKTSYGTYEDCK 72 (326)
T ss_dssp CCSCCEEEEECC-SHHHHHHHHHHHHHTCCSE---EE--EEC--SCHHHHHHHHHHHHHTG-GGSSSCCEEEEECGGGGT
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCCce---EE--EEe--cchHHHHHHHHHHHhcc-ccccCCeEEEeCcHHHhC
Confidence 345789999995 9999999999999998753 44 444 46789999999999984 554 45666677899999
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCch
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRL 250 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~L 250 (337)
|||+||+++|.||+||++|.||+..|++|++++++.|+++ +|++++|++|||+|++|++++|.+ ++|+ |+||.||.|
T Consensus 73 ~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlvvtNPvd~~t~~~~k~~-g~p~~rviG~gt~L 150 (326)
T 3pqe_A 73 DADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVATNPVDILTYATWKFS-GLPKERVIGSGTTL 150 (326)
T ss_dssp TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHH
T ss_pred CCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEcCChHHHHHHHHHHhc-CCCHHHEEeecccc
Confidence 9999999999999999999999999999999999999998 799999999999999999999987 6776 788999999
Q ss_pred hHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhh----cccchHHHHHHHHhccCccc
Q 019713 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD----HKWLEEGFTETIQKVRLVDN 323 (337)
Q Consensus 251 Ds~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~----~~~~~~e~~~~v~~~g~~~~ 323 (337)
|++|++++||+++|+++++|++ +||||||+||||+||+++|+|+|+.+++++ ++|..++|.++++++|++.-
T Consensus 151 D~~R~~~~la~~lgv~~~~V~~-~V~GeHG~t~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi 226 (326)
T 3pqe_A 151 DSARFRFMLSEYFGAAPQNVCA-HIIGEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHII 226 (326)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEC-CEEBSSSTTCEECGGGCEETTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHcee-eeeecCCCceeeeeeeeeECCEEHHHHhhcccCCCHHHHHHHHHHHHhhhheee
Confidence 9999999999999999999997 899999999999999999999999999876 56888999999999998764
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-49 Score=383.43 Aligned_cols=219 Identities=17% Similarity=0.236 Sum_probs=192.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc-cCCcccEEEecCcccccCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPLLREVKIGINPYELFED 172 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~-~~~~~~v~i~t~~~eal~d 172 (337)
.+.+||+|||| |.||+++++.|+.+++..+ |.|+| .++++++|+++||+|+. ++....+ +.++++++++|
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~e-----l~L~D--i~~~~~~g~a~DL~~~~~~~~~~~i-~~~~d~~~~~~ 87 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKDLADE-----LALVD--VIEDKLKGEMMDLQHGSLFLKTPKI-VSSKDYSVTAN 87 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSE-----EEEEC--SCHHHHHHHHHHHHHTGGGCSCCEE-EECSSGGGGTT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCce-----EEEEe--CChHHHHHHHHhhhhhhhccCCCeE-EEcCCHHHhCC
Confidence 45689999996 9999999999999987653 44554 46789999999999986 3322233 34568899999
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchh
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LD 251 (337)
||+||+++|.||+|||+|.||+.+|++|++++++.|+++ +|+++++++|||+|++|++++|.+ ++|+ |+||+||.||
T Consensus 88 aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPvdi~t~~~~k~s-g~p~~rviG~gt~LD 165 (331)
T 4aj2_A 88 SKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIVSNPVDILTYVAWKIS-GFPKNRVIGSGCNLD 165 (331)
T ss_dssp EEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHH
T ss_pred CCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChHHHHHHHHHHHh-CCCHHHEEeeccccH
Confidence 999999999999999999999999999999999999999 899999999999999999999998 6776 7899999999
Q ss_pred HHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhc-----ccchHHHHHHHHhccCcccc
Q 019713 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH-----KWLEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 252 s~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~-----~~~~~e~~~~v~~~g~~~~~ 324 (337)
++|++++||+++|+++++|+. +||||||+||||+||+++|+|+|+.+++++. ....++|.++++++|+++-.
T Consensus 166 ~~R~~~~la~~lgv~~~~V~~-~ViGeHG~s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~ 242 (331)
T 4aj2_A 166 SARFRYLMGERLGVHPLSCHG-WVLGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIK 242 (331)
T ss_dssp HHHHHHHHHHHHTSCGGGCBC-CEEBCSSTTCEECGGGCEETTEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHCEE-eEEecCCCceeEeeecCeECCEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhh
Confidence 999999999999999999997 8999999999999999999999999987531 11236899999999987643
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-49 Score=379.19 Aligned_cols=215 Identities=22% Similarity=0.293 Sum_probs=183.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCcccccCCCcE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEW 175 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~~eal~dADv 175 (337)
|||+|||| |.||+++++.|+.++++++ + +|+|+ ++++++|+++||+|+.++...++.+. ++++++++|||+
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~e---l--~l~D~--~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDv 72 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKE---V--VMVDI--KDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDV 72 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSE---E--EEECS--STTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCE---E--EEEeC--chHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCE
Confidence 69999995 9999999999999998753 4 45544 56789999999999874433344443 478999999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHH
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R 254 (337)
||+++|.||+|||+|.|++.+|++|++++++.|+++ +|+++++++|||+|++|++++|.+ ++|+ |+||.+|.||++|
T Consensus 73 Vii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvd~~t~~~~k~~-g~p~~rviG~~t~LD~~R 150 (314)
T 3nep_X 73 CIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTIIVVANPLDVMTYVAYEAS-GFPTNRVMGMAGVLDTGR 150 (314)
T ss_dssp EEECCCC-------CHHHHHHHHHHHHHHHHHHHTT-CTTCEEEECCSSHHHHHHHHHHHH-TCCGGGEEECCHHHHHHH
T ss_pred EEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEecCCchhHHHHHHHHhc-CCChHHEEeecCchHHHH
Confidence 999999999999999999999999999999999999 799999999999999999999987 6776 7899999999999
Q ss_pred HHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccc
Q 019713 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 255 ~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~ 324 (337)
++++||+++|+++++|++ +||||||+||||+||+++|+|+|+.+++.++ | .++|.++++++|++.-.
T Consensus 151 ~~~~la~~lgv~~~~v~~-~ViG~Hg~t~vp~~S~~~v~g~p~~~~~~~~-~-~~~i~~~v~~~g~eIi~ 217 (314)
T 3nep_X 151 FRSFIAEELDVSVRDVQA-LLMGGHGDTMVPLPRYTTVGGIPVPQLIDDA-R-IEEIVERTKGAGGEIVD 217 (314)
T ss_dssp HHHHHHHHHTCCGGGEEE-EEEESSGGGEEEEEEEEEETTEEGGGTSCHH-H-HHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHhCcCHHHeEE-EEECCCCCcEEeeeecCeECcEehhhccCHH-H-HHHHHHHHHHhHHHHHh
Confidence 999999999999999996 8999999999999999999999999987543 3 37899999999987644
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-48 Score=368.08 Aligned_cols=193 Identities=22% Similarity=0.249 Sum_probs=168.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecCcccccCCCcE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGINPYELFEDAEW 175 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~~~eal~dADv 175 (337)
|||+|||| |+||+++|+.|+.+++++| + .|+| .++++++|+++||+|+...+..... ..+++|++++|||+
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~e---l--~L~D--i~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDv 72 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDE---I--ALVD--IAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEI 72 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSE---E--EEEC--SSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCE---E--EEEe--CCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCE
Confidence 79999995 9999999999999999875 4 4544 4678899999999998744433322 34568999999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEEecCchhHHHH
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRA 255 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~LDs~R~ 255 (337)
||+++|.||||||+|.||+..|++|+++++++|.++ +|+++++++|||+|+||++++|.++.+++|+||++|.||++|+
T Consensus 73 VvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~-~p~aivlvvsNPvd~~t~i~~k~sg~p~~rvig~gT~LDs~R~ 151 (294)
T 2x0j_A 73 IVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPMDVMTYIMWKESGKPRNEVFGMGNQLDSQRL 151 (294)
T ss_dssp EEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSHHHHHHHHHHHSSCCTTSEEECCHHHHHHHH
T ss_pred EEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc-CCceEEEEecCcchhhHHhhHHHcCCChhhEEEeeeEEeHHHH
Confidence 999999999999999999999999999999999999 7999999999999999999999995444589999999999999
Q ss_pred HHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhh
Q 019713 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEII 301 (337)
Q Consensus 256 ~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i 301 (337)
+++|++++++++. + .+||||||+||||+||+++++|.+..+.+
T Consensus 152 ~~~l~~~~~~~~~--~-~~V~G~HGdt~vp~~S~~~v~g~~~~~~i 194 (294)
T 2x0j_A 152 KERLYNAGARNIR--R-AWIIGEHGDSMFVAKSLADFDGEVDWEAV 194 (294)
T ss_dssp HHHHHHTTCEEEC--C-CCEEBCSSTTCEECGGGCCEESCCCHHHH
T ss_pred HHHHhhcccCCcc--e-eEEEecCCCcEEEeeeccCCCCchhHHHH
Confidence 9999999886543 3 58999999999999999999998755443
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-48 Score=375.46 Aligned_cols=221 Identities=25% Similarity=0.334 Sum_probs=184.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+++||+||||+|+||+++++.++..++..+ |. |+| .++++++|+++||+|+.++ ..++..+++.+++++|||
T Consensus 7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~e---vv--LiD--i~~~k~~g~a~DL~~~~~~-~~~i~~t~d~~~al~dAD 78 (343)
T 3fi9_A 7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPN---LC--LYD--PFAVGLEGVAEEIRHCGFE-GLNLTFTSDIKEALTDAK 78 (343)
T ss_dssp CSSEEEEETTTSHHHHHHHHHHHHTTCCSC---EE--EEC--SCHHHHHHHHHHHHHHCCT-TCCCEEESCHHHHHTTEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhcCCCCE---EE--EEe--CCchhHHHHHHhhhhCcCC-CCceEEcCCHHHHhCCCC
Confidence 357999999779999999999999998654 54 444 4678999999999998643 246777777778999999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeE-EEEeCCCchhHHHHHHHHCCCCCCCeEEecCchhHH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK-VIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDEN 253 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~ai-vIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~LDs~ 253 (337)
+||+++|.||+||++|.|++.+|++|++++++.|+++ +|+++ +|++|||+|++|++++|.+ ++|++.+.++|.||++
T Consensus 79 vVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~-~p~a~~vlvvsNPvd~~t~i~~k~s-g~p~~rv~g~t~LDs~ 156 (343)
T 3fi9_A 79 YIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSY-CPDCKHVIIIFNPADITGLVTLIYS-GLKPSQVTTLAGLDST 156 (343)
T ss_dssp EEEECCC-------CHHHHHHHHHHHHHHHHHHHHHH-CTTCCEEEECSSSHHHHHHHHHHHH-TCCGGGEEEECCHHHH
T ss_pred EEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-ccCcEEEEEecCchHHHHHHHHHHc-CCCcceEEEecCcHHH
Confidence 9999999999999999999999999999999999999 69996 9999999999999999998 5887443457899999
Q ss_pred HHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhccc---chHHHHHHHHhccCcccce
Q 019713 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW---LEEGFTETIQKVRLVDNFT 325 (337)
Q Consensus 254 R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~---~~~e~~~~v~~~g~~~~~~ 325 (337)
|++++||+++|++|++|++++||||||++|||+||+++|+|+|+.+++....+ ..++|.++|+++|+++-..
T Consensus 157 R~~~~la~~l~v~~~~v~~~~ViGeHgds~vp~~S~a~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~ 231 (343)
T 3fi9_A 157 RLQSELAKHFGIKQSLVTNTRTYGGHGEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKL 231 (343)
T ss_dssp HHHHHHHHHHTSCGGGEECCCEEESSGGGEEECGGGCEETTEEGGGTTTBTTBCHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHcccceEEEcCCCceeeeeecceECCEEhhHhccccCCCHHHHHHHHHHHHhhhHHHHHc
Confidence 99999999999999999866999999999999999999999999998643222 2347899999998876443
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=368.43 Aligned_cols=219 Identities=19% Similarity=0.270 Sum_probs=186.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d 172 (337)
|++.+||+|||| |+||+++++.|+.++++++ |+|+|+ ++++++|+++||.|+. ++..+++++.+++++++|
T Consensus 2 ~~~~~KI~IiGa-G~vG~~~a~~l~~~~~~~e-----l~L~Di--~~~~~~g~~~dl~~~~-~~~~~~~v~~~~~~a~~~ 72 (318)
T 1ez4_A 2 MPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEE-----FVIVDV--VKDRTKGDALDLEDAQ-AFTAPKKIYSGEYSDCKD 72 (318)
T ss_dssp BTTBCEEEEECC-SHHHHHHHHHHHHHTCCSE-----EEEECS--SHHHHHHHHHHHHGGG-GGSCCCEEEECCGGGGTT
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHcCCCCCE-----EEEEeC--CchHHHHHHHHHHHHH-HhcCCeEEEECCHHHhCC
Confidence 566689999996 9999999999999998753 455555 6689999999999987 555677777788999999
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchh
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LD 251 (337)
||+||+++|.|++||++|.|++.+|+++++++++.|+++ +|++|+|++|||+|++|+++++.+ ++|+ |+||+||.||
T Consensus 73 aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~~~t~~~~k~s-~~p~~rviG~gt~LD 150 (318)
T 1ez4_A 73 ADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPVDILTYATWKFS-GFPKERVIGSGTSLD 150 (318)
T ss_dssp CSEEEECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHH
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCcHHHHHHHHHHHc-CCCHHHEEeccccch
Confidence 999999999999999999999999999999999999999 799999999999999999999998 6776 7889999999
Q ss_pred HHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccc---hHHHHHHHHhccCccc
Q 019713 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL---EEGFTETIQKVRLVDN 323 (337)
Q Consensus 252 s~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~---~~e~~~~v~~~g~~~~ 323 (337)
++|+++++|+++|+++++|+ ++||||||++++|+||+++++|+|+.+++++..|. .+++.++++++|++.-
T Consensus 151 ~~R~~~~la~~lgv~~~~v~-~~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii 224 (318)
T 1ez4_A 151 SSRLRVALGKQFNVDPRSVD-AYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDII 224 (318)
T ss_dssp HHHHHHHHHHHHTCCGGGEE-CCEESSSSSSCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcChhHEE-EEEecccCCceEEEehhhcCCCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhhe
Confidence 99999999999999999999 59999999999999999999999999988655563 3678888888887763
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-47 Score=367.74 Aligned_cols=215 Identities=21% Similarity=0.302 Sum_probs=189.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC---cccEEEecCcccccC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL---LREVKIGINPYELFE 171 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~---~~~v~i~t~~~eal~ 171 (337)
+.+||+|||| |.||+++++.|+..++ ++ +.|+|++..+++++|+++||.|+. ++ ..+++.+ +++++++
T Consensus 7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~-~~-----v~l~D~~~~~~~~~g~a~dl~~~~-~~~~~~~~i~~t-~d~~a~~ 77 (315)
T 3tl2_A 7 KRKKVSVIGA-GFTGATTAFLLAQKEL-AD-----VVLVDIPQLENPTKGKALDMLEAS-PVQGFDANIIGT-SDYADTA 77 (315)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-CE-----EEEECCGGGHHHHHHHHHHHHHHH-HHHTCCCCEEEE-SCGGGGT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-Ce-----EEEEeccchHHHHHHhhhhHHHhh-hhccCCCEEEEc-CCHHHhC
Confidence 4579999995 9999999999999887 53 445565533788999999999986 32 2344443 5699999
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCch
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRL 250 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~L 250 (337)
|||+||+++|.||+|||+|.|++.+|++|++++++.|+++ +|++++|++|||+|++|++++|.+ ++|+ |+||.||.|
T Consensus 78 ~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vlvvsNPvd~~t~~~~k~s-g~p~~rviG~gt~L 155 (315)
T 3tl2_A 78 DSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH-SPNAIIVVLTNPVDAMTYSVFKEA-GFPKERVIGQSGVL 155 (315)
T ss_dssp TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEECCHHH
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEECCChHHHHHHHHHHhc-CCChHHEEeeccCc
Confidence 9999999999999999999999999999999999999999 799999999999999999999987 6776 789999999
Q ss_pred hHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCccc
Q 019713 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDN 323 (337)
Q Consensus 251 Ds~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~ 323 (337)
|++|++++||+++|+++++|++ +||||||+||||+||+++|+|+|+.+++.++ | .++|.++++++|++.-
T Consensus 156 D~~R~~~~la~~lgv~~~~v~~-~viG~Hg~t~vp~~S~~~v~g~p~~~~~~~~-~-~~~i~~~v~~~g~eii 225 (315)
T 3tl2_A 156 DTARFRTFIAQELNLSVKDITG-FVLGGHGDDMVPLVRYSYAGGIPLETLIPKE-R-LEAIVERTRKGGGEIV 225 (315)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEC-CEEBCSGGGCEECGGGCEETTEEGGGTSCHH-H-HHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHcee-eEecCCCCcceeecccCeECCEEHHHhCCHH-H-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999997 8999999999999999999999999987544 3 3689999999998764
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=363.58 Aligned_cols=218 Identities=20% Similarity=0.271 Sum_probs=190.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
++.+||+|||| |+||+++++.|+.++++++ |+|+|+ ++++++|.++||.|+. ++..+++++.+++++++||
T Consensus 7 ~~~~KI~IiGa-G~vG~~la~~l~~~~~~~e-----l~L~Di--~~~~~~g~~~dl~~~~-~~~~~~~i~~~~~~a~~~a 77 (326)
T 2zqz_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQE-----IGIVDI--FKDKTKGDAIDLSNAL-PFTSPKKIYSAEYSDAKDA 77 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSE-----EEEECS--CHHHHHHHHHHHHTTG-GGSCCCEEEECCGGGGGGC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHcCCCCCE-----EEEEeC--CchHhHHHHHHHHHHH-HhcCCeEEEECCHHHhCCC
Confidence 34589999996 9999999999999998753 455555 6689999999999987 5556777777889999999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs 252 (337)
|+||+++|.|++||++|.|++.+|+++++++++.|+++ +|++|+|++|||+|++|+++++.+ ++|+ |+||+||.||+
T Consensus 78 DvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~~~t~~~~k~s-~~p~~rviG~gt~LD~ 155 (326)
T 2zqz_A 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANPVDILTYATWKLS-GFPKNRVVGSGTSLDT 155 (326)
T ss_dssp SEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHH-TCCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHHH
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCcHHHHHHHHHHHc-CCCHHHEEEccccchH
Confidence 99999999999999999999999999999999999999 799999999999999999999998 6776 78899999999
Q ss_pred HHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhh-hcccc---hHHHHHHHHhccCccc
Q 019713 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK-DHKWL---EEGFTETIQKVRLVDN 323 (337)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~-~~~~~---~~e~~~~v~~~g~~~~ 323 (337)
+|++++||+++|+++++|+ ++||||||++++|+||+++++|+|+.++++ +..|. .+++.++++++|++.-
T Consensus 156 ~R~~~~la~~lgv~~~~v~-~~v~G~HG~t~~p~~s~~~v~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii 229 (326)
T 2zqz_A 156 ARFRQSIAEMVNVDARSVH-AYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEII 229 (326)
T ss_dssp HHHHHHHHHHHTCCGGGEE-CCEEBSSSTTCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHhCCChhheE-EEEecccCCceEeehhhceECCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999 599999999999999999999999999876 44464 3588899998887763
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-47 Score=365.14 Aligned_cols=214 Identities=22% Similarity=0.258 Sum_probs=186.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCc--ccEEEecCcccccCCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGINPYELFEDA 173 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~--~~v~i~t~~~eal~dA 173 (337)
++||+|||| |.||+++++.|+.+++. .++|+|+ ++++++|+++||+|+..+.. .+++. ++++++++||
T Consensus 5 ~~kI~iiGa-G~vG~~~a~~l~~~~~~------~v~l~Di--~~~~~~g~a~dL~~~~~~~~~~~~v~~-t~d~~a~~~a 74 (321)
T 3p7m_A 5 RKKITLVGA-GNIGGTLAHLALIKQLG------DVVLFDI--AQGMPNGKALDLLQTCPIEGVDFKVRG-TNDYKDLENS 74 (321)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCC------EEEEECS--SSSHHHHHHHHHHTTHHHHTCCCCEEE-ESCGGGGTTC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCc------eEEEEeC--ChHHHHHHHHHHHhhhhhcCCCcEEEE-cCCHHHHCCC
Confidence 479999995 99999999999998873 3455554 55788999999999864332 23443 4568999999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs 252 (337)
|+||+++|.||+|||+|.|++.+|++|++++++.|+++ +|++++|++|||+|++|+++++.+ ++|+ |+||++|.||+
T Consensus 75 DvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvd~~t~~~~k~s-g~p~~rviG~~~~LD~ 152 (321)
T 3p7m_A 75 DVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHN-CPNAFVICITNPLDIMVNMLQKFS-GVPDNKIVGMAGVLDS 152 (321)
T ss_dssp SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEEECHHHHH
T ss_pred CEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHH-CCCcEEEEecCchHHHHHHHHHhc-CCCHHHEEeeccchHH
Confidence 99999999999999999999999999999999999999 699999999999999999999987 6775 78999999999
Q ss_pred HHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccc----hHHHHHHHHhccCccc
Q 019713 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKVRLVDN 323 (337)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~----~~e~~~~v~~~g~~~~ 323 (337)
+|++++||+++|+++++|+. +||||||+||+|+||+++|+|+|+.+++. ..|. .+++.++++++|++.-
T Consensus 153 ~R~~~~la~~l~v~~~~v~~-~v~G~HG~t~~p~~s~~~v~g~p~~~~~~-~~~~~~~~~~~i~~~v~~~g~eIi 225 (321)
T 3p7m_A 153 ARFRTFLADELNVSVQQVQA-YVMGGHGDTMVPLTKMSNVAGVSLEQLVK-EGKLKQERLDAIVSRTRSGGGEIV 225 (321)
T ss_dssp HHHHHHHHHHHTCCGGGEEC-CEEECSGGGEEECTTTCEETTEEHHHHHH-TTSSCHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHceE-eeecCcCCceeeeeeeceECCEehhhhcc-ccCCCHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999996 89999999999999999999999999884 3453 3457788888887653
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=357.61 Aligned_cols=202 Identities=23% Similarity=0.279 Sum_probs=178.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC--cccEEEecCcccccCCCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYELFEDAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~--~~~v~i~t~~~eal~dAD 174 (337)
|||+|||| |.+|+++++.|+..+++++ +. |+| +++++++|+++|++|+...+ ..+++.+++ +++++|||
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~---v~--L~D--~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aD 71 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDE---IA--LVD--IAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSE 71 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSE---EE--EEC--SSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCe---EE--EEE--CChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCC
Confidence 69999996 9999999999999988653 44 444 46678999999999987333 335555555 99999999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~ 253 (337)
+||+++|.||+|||+|.|++.+|++|++++++.|+++ +|++++|++|||+|++|++++|.+ ++|+ |+||+||.||++
T Consensus 72 iVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvsNPvd~~t~~~~k~~-g~p~~rviG~gt~LD~~ 149 (294)
T 1oju_A 72 IIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPMDVMTYIMWKES-GKPRNEVFGMGNQLDSQ 149 (294)
T ss_dssp EEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSHHHHHHHHHHHS-CCCTTSEEECSHHHHHH
T ss_pred EEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHhc-CCCHHHEeecccccHHH
Confidence 9999999999999999999999999999999999999 799999999999999999999997 5766 889999999999
Q ss_pred HHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcc
Q 019713 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVD 322 (337)
Q Consensus 254 R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~ 322 (337)
|++++|| ++|++|++ + ++||||||+||||+||+++|+|+| +.++|.++++++|++.
T Consensus 150 R~~~~la-~l~v~~~~-~-~~V~G~Hg~t~vp~~s~~~v~g~~----------~~~~~~~~v~~~g~ei 205 (294)
T 1oju_A 150 RLKERLY-NAGARNIR-R-AWIIGEHGDSMFVAKSLADFDGEV----------DWEAVENDVRFVAAEV 205 (294)
T ss_dssp HHHHHHH-HTTCBSCC-C-CCEEBCSSTTCEECGGGCCCBSCC----------CHHHHHHHHHTTHHHH
T ss_pred HHHHHHH-HhCCCccC-c-eEEEecCCCceeeecccceECCcC----------hHHHHHHHHHHHHHHH
Confidence 9999999 99999999 7 599999999999999999999988 2467888888887765
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=359.87 Aligned_cols=215 Identities=20% Similarity=0.278 Sum_probs=192.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
+||+|||| |+||+++++.|+.+++++| |+|+|+ ++++++|+++||.|+. ++..++.++.+++++++|||+|
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~e-----l~L~Di--~~~k~~g~a~dl~~~~-~~~~~~~v~~~~~~a~~~aD~V 71 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVARE-----VVLVDL--DRKLAQAHAEDILHAT-PFAHPVWVWAGSYGDLEGARAV 71 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSE-----EEEECS--SHHHHHHHHHHHHTTG-GGSCCCEEEECCGGGGTTEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCE-----EEEEeC--ChhHHHHHHHHHHHhH-hhcCCeEEEECCHHHhCCCCEE
Confidence 69999996 9999999999999998764 445555 5688999999999987 4445666666789999999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R~ 255 (337)
|+++|.|++||++|.|++.+|+++++++++.|+++ +|++|+|++|||+|++|++++|.+ ++|+ |+||+||.||++|+
T Consensus 72 ii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~~~t~~~~k~s-~~p~~rviG~gt~LD~~R~ 149 (310)
T 2xxj_A 72 VLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPVDVMTQVAYALS-GLPPGRVVGSGTILDTARF 149 (310)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHHHHHH-TCCGGGEEECTTHHHHHHH
T ss_pred EECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEecCchHHHHHHHHHHc-CCCHHHEEecCcchhHHHH
Confidence 99999999999999999999999999999999999 799999999999999999999998 6776 78899999999999
Q ss_pred HHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcc--c---chHHHHHHHHhccCccc
Q 019713 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK--W---LEEGFTETIQKVRLVDN 323 (337)
Q Consensus 256 ~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~--~---~~~e~~~~v~~~g~~~~ 323 (337)
++++|+++|+++++|+. +||||||++++|+||+++++|+|+.+++++.. | ..+++.++++++|++.-
T Consensus 150 ~~~la~~lgv~~~~v~~-~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii 221 (310)
T 2xxj_A 150 RALLAEYLRVAPQSVHA-YVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRII 221 (310)
T ss_dssp HHHHHHHHTSCGGGEEE-EEEBCSSTTCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHhCcCHHHeEE-EEecccCCccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999996 99999999999999999999999999876543 5 34678888888887663
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=360.67 Aligned_cols=214 Identities=22% Similarity=0.309 Sum_probs=181.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC--cccEEEecCcccccCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYELFED 172 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~--~~~v~i~t~~~eal~d 172 (337)
+++||+|||| |.||+++++.|+..++. .+.|+|+ ++++++|+++||+|+...+ ..++..+ +++++++|
T Consensus 6 ~~~kI~viGa-G~vG~~~a~~l~~~~~~------~v~L~Di--~~~~~~g~~~dl~~~~~~~~~~~~v~~t-~d~~a~~~ 75 (324)
T 3gvi_A 6 ARNKIALIGS-GMIGGTLAHLAGLKELG------DVVLFDI--AEGTPQGKGLDIAESSPVDGFDAKFTGA-NDYAAIEG 75 (324)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCC------EEEEECS--SSSHHHHHHHHHHHHHHHHTCCCCEEEE-SSGGGGTT
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCCC------eEEEEeC--CchhHHHHHHHHhchhhhcCCCCEEEEe-CCHHHHCC
Confidence 3579999996 99999999999998872 2445554 5678899999999986322 2344444 56799999
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchh
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LD 251 (337)
||+||+++|.||+||++|.|++.+|++|++++++.|+++ +|++++|++|||+|++|++++|.+ ++|+ |+||.+|.||
T Consensus 76 aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvtNPvd~~t~~~~k~s-g~p~~rviG~~~~LD 153 (324)
T 3gvi_A 76 ADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY-APEAFVICITNPLDAMVWALQKFS-GLPAHKVVGMAGVLD 153 (324)
T ss_dssp CSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEECCHHHH
T ss_pred CCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHH-CCCeEEEecCCCcHHHHHHHHHhc-CCCHHHEEeecCccH
Confidence 999999999999999999999999999999999999999 699999999999999999999987 6776 7899999999
Q ss_pred HHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccc----hHHHHHHHHhccCcc
Q 019713 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKVRLVD 322 (337)
Q Consensus 252 s~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~----~~e~~~~v~~~g~~~ 322 (337)
++|++++||+++|+++++|+. +||||||+||||+||+++|+|+|+.+++. ..|. .+++.++++++|+++
T Consensus 154 ~~R~~~~la~~lgv~~~~v~~-~v~G~HG~t~~p~~s~~~v~g~p~~~~~~-~~~~~~~~~~~i~~~v~~~g~eI 226 (324)
T 3gvi_A 154 SARFRYFLSEEFNVSVEDVTV-FVLGGHGDSMVPLARYSTVAGIPLPDLVK-MGWTSQDKLDKIIQRTRDGGAEI 226 (324)
T ss_dssp HHHHHHHHHHHHTCCGGGEEC-CEEECSGGGEEECGGGCEETTEEHHHHHH-TTSSCHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHCeE-EEEcCCCCceeeehhhCeECCEEHHHhhh-ccCCCHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999996 89999999999999999999999999884 3453 346788888888765
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=354.07 Aligned_cols=217 Identities=21% Similarity=0.282 Sum_probs=192.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCc-ccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~t~~~eal~dA 173 (337)
+++||+|||| |+||+++++.|+.++++++ +.|+|+ +++++++.++||+|+. ++. .++.++.+++++++||
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~e-----i~L~Di--~~~~~~g~~~dl~~~~-~~~~~~~~v~~~~~~a~~~a 75 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDE-----LVIIDL--DTEKVRGDVMDLKHAT-PYSPTTVRVKAGEYSDCHDA 75 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCSCSE-----EEEECS--CHHHHHHHHHHHHHHG-GGSSSCCEEEECCGGGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCE-----EEEEeC--ChhHhhhhhhhHHhhh-hhcCCCeEEEeCCHHHhCCC
Confidence 4579999996 9999999999999988653 445555 5678999999999985 544 4566666889999999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs 252 (337)
|+||+++|.|++||++|.|++.+|+++++++++.|+++ +|++++|++|||+|++|+++++.+ ++|+ |+||+||.||+
T Consensus 76 DvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~t~~~~k~~-~~p~~rviG~gt~lD~ 153 (317)
T 3d0o_A 76 DLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNPVDILAYATWKFS-GLPKERVIGSGTILDS 153 (317)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHHH
T ss_pred CEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCcHHHHHHHHHHHh-CCCHHHEEecCccccH
Confidence 99999999999999999999999999999999999999 799999999999999999999998 6776 78899999999
Q ss_pred HHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccc---hHHHHHHHHhccCccc
Q 019713 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL---EEGFTETIQKVRLVDN 323 (337)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~---~~e~~~~v~~~g~~~~ 323 (337)
+|++++||+++|+++++|+ ++||||||++++|+||+++++|+|+.+++++..|. .+++.++++++|++.-
T Consensus 154 ~r~~~~la~~l~v~~~~v~-~~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii 226 (317)
T 3d0o_A 154 ARFRLLLSEAFDVAPRSVD-AQIIGEHGDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDII 226 (317)
T ss_dssp HHHHHHHHHHHTSCGGGCB-CCEEBCSSTTCEECTTTCEETTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHhCcChhhEE-EEEEecCCCCeeEeeeccccCCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEE
Confidence 9999999999999999999 59999999999999999999999999988655563 3678888888887763
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-46 Score=354.60 Aligned_cols=211 Identities=20% Similarity=0.310 Sum_probs=185.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCc--ccEEEecCcccccCCCcE
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGINPYELFEDAEW 175 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~--~~v~i~t~~~eal~dADv 175 (337)
||+|||| |+||+++++.|+.+++ ++ +. |+|+ ++++++|+++||.|+...+. .+++.+ +++++++|||+
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l-~e---l~--L~Di--~~~~~~g~~~dl~~~~~~~~~~~~i~~t-~d~~a~~~aD~ 70 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGY-DD---LL--LIAR--TPGKPQGEALDLAHAAAELGVDIRISGS-NSYEDMRGSDI 70 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTC-SC---EE--EECS--STTHHHHHHHHHHHHHHHHTCCCCEEEE-SCGGGGTTCSE
T ss_pred CEEEECc-CHHHHHHHHHHHhCCC-CE---EE--EEcC--ChhhHHHHHHHHHHhhhhcCCCeEEEEC-CCHHHhCCCCE
Confidence 7999996 9999999999999888 54 54 4554 56888999999999863322 345544 45799999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHH
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R 254 (337)
||+++|.|++||++|.|++.+|++|++++++.|+++ +|++|+|++|||+|++|++++|++ ++|+ |+||+||.||++|
T Consensus 71 Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~~~t~~~~k~~-~~p~~rviG~gt~LD~~R 148 (308)
T 2d4a_B 71 VLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAY-AKDAIVVITTNPVDAMTYVMYKKT-GFPRERVIGFSGILDSAR 148 (308)
T ss_dssp EEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEECCHHHHHHH
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCchHHHHHHHHHhc-CCChhhEEEecccchHHH
Confidence 999999999999999999999999999999999999 699999999999999999999986 6776 7899999999999
Q ss_pred HHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCccc
Q 019713 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDN 323 (337)
Q Consensus 255 ~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~ 323 (337)
++++||+++|+++++|+. +||||||++|+|+||+++++|+|+.+++.++.| +++.++++++|++.-
T Consensus 149 ~~~~la~~lgv~~~~v~~-~v~G~Hg~t~~p~~s~~~v~g~~~~~~~~~~~~--~~~~~~v~~~g~eii 214 (308)
T 2d4a_B 149 MAYYISQKLGVSFKSVNA-IVLGMHGQKMFPVPRLSSVGGVPLEHLMSKEEI--EEVVSETVNAGAKIT 214 (308)
T ss_dssp HHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHSCHHHH--HHHHHHHHTHHHHHH
T ss_pred HHHHHHHHhCcChhHeEE-EEEeccCCceeeeehhccCCCEEHHHHcCHHHH--HHHHHHHHHhhHhhh
Confidence 999999999999999996 899999999999999999999999998755443 688888888877653
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=354.76 Aligned_cols=218 Identities=23% Similarity=0.323 Sum_probs=180.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
++++||+|||| |+||+++++.|+.++++++ |+|+|+ ++++++|+++||.|+. ++..+++++.+++++++||
T Consensus 5 ~~~~KI~IiGa-G~vG~~~a~~l~~~~~~~e-----v~L~Di--~~~~~~g~~~dl~~~~-~~~~~~~i~~~~~~a~~~a 75 (318)
T 1y6j_A 5 KSRSKVAIIGA-GFVGASAAFTMALRQTANE-----LVLIDV--FKEKAIGEAMDINHGL-PFMGQMSLYAGDYSDVKDC 75 (318)
T ss_dssp --CCCEEEECC-SHHHHHHHHHHHHTTCSSE-----EEEECC--C---CCHHHHHHTTSC-CCTTCEEEC--CGGGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCE-----EEEEeC--ChHHHHHHHHHHHHhH-HhcCCeEEEECCHHHhCCC
Confidence 45689999996 9999999999999998764 445555 4678899999999987 5556777766789999999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs 252 (337)
|+||+++|.|++||++|.|++.+|+++++++++.|+++ +|+++||++|||+|++|+++++.+ ++|+ |+||+||.||+
T Consensus 76 DvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~~~~~~k~s-~~p~~rviG~gt~Ld~ 153 (318)
T 1y6j_A 76 DVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNPVDIITYMIQKWS-GLPVGKVIGSGTVLDS 153 (318)
T ss_dssp SEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSSHHHHHHHHHHHH-TCCTTTEEECTTHHHH
T ss_pred CEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCcHHHHHHHHHHHc-CCCHHHEeccCCchHH
Confidence 99999999999999999999999999999999999999 799999999999999999999998 5776 88999999999
Q ss_pred HHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhc--ccc---hHHHHHHHHhccCccc
Q 019713 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--KWL---EEGFTETIQKVRLVDN 323 (337)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~--~~~---~~e~~~~v~~~g~~~~ 323 (337)
+|++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++++. .|. .+++.++++++|++.-
T Consensus 154 ~r~~~~la~~lgv~~~~v~~-~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii 228 (318)
T 1y6j_A 154 IRFRYLLSEKLGVDVKNVHG-YIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATII 228 (318)
T ss_dssp HHHHHHHHTTTTCCTTTEEC-CEEBCSSSSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHeEE-EEecccCCcEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHh
Confidence 99999999999999999997 9999999999999999999999999887543 354 4688899998887663
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-45 Score=351.66 Aligned_cols=231 Identities=50% Similarity=0.802 Sum_probs=205.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc--chhhHHHhHHHhHhhhccCCcccEEEecCcccccC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE--RSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d--~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~ 171 (337)
++++||+||||+|+||+++++.|+.+++++.++...++|+|++ ..+++++|+++||.|+..++..+++.+++.+++++
T Consensus 3 ~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~ 82 (329)
T 1b8p_A 3 KTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFK 82 (329)
T ss_dssp CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhC
Confidence 3468999999889999999999999998876555567777765 22678899999999975455567777777899999
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEEecCchh
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLD 251 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~LD 251 (337)
|||+||+++|.|+++|++|.+++.+|+++++++++.++++++|+++||++|||+|++|+++++.++++|++.++++|.||
T Consensus 83 ~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~~~~~~~~p~~~v~g~t~Ld 162 (329)
T 1b8p_A 83 DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLD 162 (329)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHH
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHHHHHcCCCCHHHEEEeecHH
Confidence 99999999999999999999999999999999999999984499999999999999999999998789886667779999
Q ss_pred HHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccc
Q 019713 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 252 s~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~ 324 (337)
++|+++++|+++|+++++|+..+||||||++++|+||+++++|+|+.+++.++.|..+++.++++++|++.-.
T Consensus 163 ~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~s~~p~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii~ 235 (329)
T 1b8p_A 163 HNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIID 235 (329)
T ss_dssp HHHHHHHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHceEEEEEeccCCcEeeehHHCeECCeeHHHHhccchhhHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999976799999999999999999999999998876677778999999999887643
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-45 Score=353.28 Aligned_cols=205 Identities=15% Similarity=0.130 Sum_probs=180.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc-cCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~-~~~~~~v~i~t~~~eal~dA 173 (337)
+.+||+|||| |.||+++++.|+.++++++ +. |+| .++++++|+++||+|+. ++...++.. ++++++++||
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~e---v~--L~D--i~~~~~~g~a~DL~~~~~~~~~~~i~~-t~d~~~~~da 90 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADE---VA--LVD--VMEDKLKGEMMDLEHGSLFLHTAKIVS-GKDYSVSAGS 90 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSE---EE--EEC--SCHHHHHHHHHHHHHHGGGSCCSEEEE-ESSSCSCSSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCe---EE--EEE--CCHHHHHHHHHHhhhhhhcccCCeEEE-cCCHHHhCCC
Confidence 5689999996 9999999999999999864 44 444 47789999999999984 333344544 4578899999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs 252 (337)
|+||+++|.||+|||+|.|++.+|++|++++++.|+++ +|++++|++|||+|++|++++|.+ ++|+ |+||.||.||+
T Consensus 91 DiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvtNPvdi~t~~~~k~s-g~p~~rViG~gt~LDs 168 (330)
T 3ldh_A 91 KLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHPELGTDKNKQDWKLS-GLPMHRIIGSGCNLDS 168 (330)
T ss_dssp SEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHHHHHH-CCCGGGEECCTTHHHH
T ss_pred CEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCCCccHHHHHHHHHHh-CCCHHHeecccCchhH
Confidence 99999999999999999999999999999999999999 899999999999999999999998 6776 78999999999
Q ss_pred HHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccceeh
Q 019713 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNFTLI 327 (337)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~~l~ 327 (337)
+|+++++|+++|+++++|++ +||||||+||+|+||+ +| .+++.++++++|++.-...+
T Consensus 169 ~R~~~~lA~~lgv~~~~V~~-~V~G~Hg~t~vp~~S~---------------~~-~~~~~~~v~~~g~eii~~kg 226 (330)
T 3ldh_A 169 ARFRYLMGERLGVHSCLVIG-WVIGQHGDSVPSVWSG---------------MW-DAKLHKDVVDSAYEVIKLKG 226 (330)
T ss_dssp HHHHHHHHHHHTSCTTTCCE-EECSSSSTTCCEEEEE---------------EE-ETTEEHHHHHCCCTTSTTCH
T ss_pred HHHHHHHHHHhCCCHHHeEE-EEEcCCCCceeeechh---------------hH-HHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999996 9999999999999999 22 25788899999998754443
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=346.54 Aligned_cols=218 Identities=21% Similarity=0.258 Sum_probs=191.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
++++||+|||| |.||+++++.|+..+++++ +.|+|+ +++++++.++|+.|....+..+++++++++++++||
T Consensus 4 ~~~~kI~IIGa-G~vG~sla~~l~~~~~~~e-----v~l~Di--~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~a 75 (316)
T 1ldn_A 4 NGGARVVVIGA-GFVGASYVFALMNQGIADE-----IVLIDA--NESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDA 75 (316)
T ss_dssp TTSCEEEEECC-SHHHHHHHHHHHHHTCCSE-----EEEECS--SHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTC
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhCCCCCE-----EEEEeC--CcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCC
Confidence 45689999996 9999999999999888653 445555 456899999999997632223566666789999999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs 252 (337)
|+||++++.|++||++|.|++.+|+++++++++.|+++ +|+++++++|||+|++|+++++.+ ++|+ |+||+||.||+
T Consensus 76 DvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~~iv~tNPv~~~~~~~~~~s-~~p~~rviG~gt~lD~ 153 (316)
T 1ldn_A 76 DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVATNPVDILTYATWKFS-GLPHERVIGSGTILDT 153 (316)
T ss_dssp SEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEECSSSHHHHHHHHHHHH-TCCGGGEEECTTHHHH
T ss_pred CEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHH-CCCCEEEEeCCchHHHHHHHHHHh-CCCHHHEEecccchHH
Confidence 99999999999999999999999999999999999999 699999999999999999999998 6776 78899999999
Q ss_pred HHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcc-cc---hHHHHHHHHhccCcc
Q 019713 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-WL---EEGFTETIQKVRLVD 322 (337)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~-~~---~~e~~~~v~~~g~~~ 322 (337)
+|++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++++.. |. .+++.++++++|++.
T Consensus 154 ~r~~~~la~~l~v~~~~v~~-~v~G~HG~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~ei 226 (316)
T 1ldn_A 154 ARFRFLLGEYFSVAPQNVHA-YIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQI 226 (316)
T ss_dssp HHHHHHHHHHHTSCGGGEEE-EEEBCSSTTCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHeEE-EEecccCCceeeeehhccCCCEEHHHHhhccccCCHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999996 99999999999999999999999999876554 43 267888888888766
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-45 Score=348.13 Aligned_cols=206 Identities=25% Similarity=0.288 Sum_probs=177.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--cCcccccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t~~~eal~dA 173 (337)
|||+||||+|+||+++++.|+.+ ++. ..|+|+|++. +++|+++||+|.. +..+++.. ++++++++||
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~-----~el~L~Di~~---~~~G~a~Dl~~~~--~~~~v~~~~~~~~~~~~~~a 70 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSG-----SELSLYDIAP---VTPGVAVDLSHIP--TAVKIKGFSGEDATPALEGA 70 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTT-----EEEEEECSST---THHHHHHHHHTSC--SSEEEEEECSSCCHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCC-----ceEEEEecCC---CchhHHHHhhCCC--CCceEEEecCCCcHHHhCCC
Confidence 69999998899999999999987 664 3566777653 5789999999974 33344432 4789999999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHH---HHHHCCCCCC-CeEEecCc
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI---CLKNAPSIPA-KNFHALTR 249 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i---~~k~s~~~p~-kvIG~gT~ 249 (337)
|+||+++|.||+|||+|.||+.+|++|++++++.|+++ +|+++++++|||+|++|++ ++|.++.+|+ |+||.+ .
T Consensus 71 Divii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPvd~~t~~a~~~~k~sg~~p~~rv~G~~-~ 148 (312)
T 3hhp_A 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVT-T 148 (312)
T ss_dssp SEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECC-H
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEecCcchhHHHHHHHHHHHcCCCCcceEEEEe-c
Confidence 99999999999999999999999999999999999999 7999999999999999999 7888855366 788998 9
Q ss_pred hhHHHHHHHHHHHhCCCcccccceEEEecc-CCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCccc
Q 019713 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDN 323 (337)
Q Consensus 250 LDs~R~~~~lA~~lgv~~~~V~~v~V~GnH-G~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~ 323 (337)
||++|++++||+++|+++++|+ ++||||| |+||||+||++ +|.|+. +++| ++|.++||++|++.-
T Consensus 149 LD~~R~~~~la~~lgv~~~~v~-~~V~G~Hsg~t~vp~~S~~--~g~~~~----~~~~--~~i~~~v~~~g~eIi 214 (312)
T 3hhp_A 149 LDIIRSNTFVAELKGKQPGEVE-VPVIGGHSGVTILPLLSQV--PGVSFT----EQEV--ADLTKRIQNAGTEVV 214 (312)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCC-CCEEECSSGGGEEECGGGC--TTCCCC----HHHH--HHHHHHHHTHHHHHH
T ss_pred hhHHHHHHHHHHHhCcChhHcc-eeEEeccCCCceeeecccC--CCCCCC----HHHH--HHHHHHHHhhhHHHH
Confidence 9999999999999999999999 5999999 88999999998 887753 2233 689999999888664
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-44 Score=341.48 Aligned_cols=214 Identities=18% Similarity=0.230 Sum_probs=189.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+||||+|+||+++++.|+.++++. .+.|+|++.+++++++.++||.|+.. +..++.++.+++++++|||+|
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~-----el~L~Di~~~~~~~~~~~~dl~~~~~-~~~~~~v~~~~~~a~~~aDvV 74 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIAD-----EVVFVDIPDKEDDTVGQAADTNHGIA-YDSNTRVRQGGYEDTAGSDVV 74 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCS-----EEEEECCGGGHHHHHHHHHHHHHHHT-TTCCCEEEECCGGGGTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCC-----EEEEEcCCCChhhHHHHHHHHHHHHh-hCCCcEEEeCCHHHhCCCCEE
Confidence 599999988999999999999888753 35566663366788899999999875 555666666679999999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R~ 255 (337)
|+++|.|+++|++|.+++.+|++++++++++++++ +|+++|+++|||+|++|+++++.+ ++|+ |+||+||.||++|+
T Consensus 75 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SNPv~~~~~~~~~~~-~~p~~rviG~gt~Ld~~r~ 152 (303)
T 1o6z_A 75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDLLNRHLYEAG-DRSREQVIGFGGRLDSARF 152 (303)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCSSHHHHHHHHHHHS-SSCGGGEEECCHHHHHHHH
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCChHHHHHHHHHHHc-CCCHHHeeecccchhHHHH
Confidence 99999999999999999999999999999999998 799999999999999999999998 6776 88999999999999
Q ss_pred HHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCccc
Q 019713 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDN 323 (337)
Q Consensus 256 ~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~ 323 (337)
+++||+++|+++++|+ ++||||||++++|+||+++++|.| +++.++.| +++.++++++|++.-
T Consensus 153 ~~~la~~l~v~~~~v~-~~v~G~HG~~~~p~~s~~~v~g~p--~~~~~~~~--~~~~~~v~~~g~eii 215 (303)
T 1o6z_A 153 RYVLSEEFDAPVQNVE-GTILGEHGDAQVPVFSKVSVDGTD--PEFSGDEK--EQLLGDLQESAMDVI 215 (303)
T ss_dssp HHHHHHHHTCCGGGEE-CCEEECSSTTEEECGGGCEETTBC--CCCCHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCHHHeE-EEEEeCCCCccccCCcccccCCcC--ccCCHHHH--HHHHHHHHHHhHHHH
Confidence 9999999999999999 599999999999999999999999 77654443 688888988887763
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=332.73 Aligned_cols=216 Identities=24% Similarity=0.382 Sum_probs=188.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCc-ccEEEecC---cccccCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGIN---PYELFED 172 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~t~---~~eal~d 172 (337)
|||+||||+|+||+++++.|+.++++. ++.|+|++.++++++++++||.|+. ++. .++.++.+ .+++++|
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~-----el~L~Di~~~~~~~~~~~~dl~~~~-~~~~~~~~i~~~~d~l~~al~g 74 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMK-----DLVLIGREHSINKLEGLREDIYDAL-AGTRSDANIYVESDENLRIIDE 74 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCC-----EEEEEECGGGHHHHHHHHHHHHHHH-TTSCCCCEEEEEETTCGGGGTT
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCC-----EEEEEcCCCchhhhHHHHHHHHHhH-HhcCCCeEEEeCCcchHHHhCC
Confidence 599999988999999999999888753 3556666446778999999999976 443 34444332 3899999
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchh
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LD 251 (337)
||+||+++|.|+++|++|.+++.+|++++++++++++++ + +++|+++|||+|++|++++|.+ ++|+ |+||+||.||
T Consensus 75 aD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~-~~~vlv~SNPv~~~t~~~~k~~-~~p~~rviG~gt~LD 151 (313)
T 1hye_A 75 SDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI-C-DTKIFVITNPVDVMTYKALVDS-KFERNQVFGLGTHLD 151 (313)
T ss_dssp CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-C-CCEEEECSSSHHHHHHHHHHHH-CCCTTSEEECTTHHH
T ss_pred CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-C-CeEEEEecCcHHHHHHHHHHhh-CcChhcEEEeCccHH
Confidence 999999999999999999999999999999999999998 6 9999999999999999999996 5766 8899999999
Q ss_pred HHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhh--hhcccchHHHHHHHHhccCcccc
Q 019713 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEII--KDHKWLEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 252 s~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i--~~~~~~~~e~~~~v~~~g~~~~~ 324 (337)
++|+++++|+++|+++++|+. +||||||++++|+||+++++|+|+.+++ .++ ..+++.++++++|++.-.
T Consensus 152 ~~r~~~~la~~lgv~~~~v~~-~v~G~Hg~~~~p~~s~~~v~g~~~~~~~~~~~~--~~~~~~~~v~~~g~eii~ 223 (313)
T 1hye_A 152 SLRFKVAIAKFFGVHIDEVRT-RIIGEHGDSMVPLLSATSIGGIPIQKFERFKEL--PIDEIIEDVKTKGEQIIR 223 (313)
T ss_dssp HHHHHHHHHHHHTCCGGGEEC-CEEECSSTTEEECGGGCEETTEEGGGCGGGGGC--CHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHhCcCHHHeEE-EEeeccCCcccceeeccccCCEEHHHHhcCCHH--HHHHHHHHHHhccceeec
Confidence 999999999999999999996 9999999999999999999999999975 332 247899999999988754
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=339.70 Aligned_cols=212 Identities=25% Similarity=0.298 Sum_probs=177.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC--cccEEEecCcccccCCCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYELFEDAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~--~~~v~i~t~~~eal~dAD 174 (337)
+||+|||| |.||+++++.|+..+++ .+.|+|+ +++++++.++||.|+..+. ..+++.+ +++++++|||
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~------~v~L~Di--~~~~~~g~~~dl~~~~~~~~~~~~i~~t-~d~~a~~~aD 72 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELG------DIVLLDI--VEGVPQGKALDLYEASPIEGFDVRVTGT-NNYADTANSD 72 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCS------EEEEECS--SSSHHHHHHHHHHTTHHHHTCCCCEEEE-SCGGGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCC------eEEEEeC--CccHHHHHHHhHHHhHhhcCCCeEEEEC-CCHHHHCCCC
Confidence 69999996 99999999999998864 1445555 4678899999999975322 2345554 4579999999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~ 253 (337)
+||+++|.|++||++|.|++.+|+++++++++.|+++ +|++++|++|||+|++|+++++.+ ++|+ |+||+||.||++
T Consensus 73 ~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~vi~~tNPv~~~t~~~~~~~-~~~~~rviG~gt~LD~~ 150 (309)
T 1ur5_A 73 VIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVNNPLDAMTYLAAEVS-GFPKERVIGQAGVLDAA 150 (309)
T ss_dssp EEEECCCC--------CHHHHHHHHHHHHHHHHHGGG-CTTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEECCHHHHHH
T ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEcCCchHHHHHHHHHHc-CCCHHHEEECCcchHHH
Confidence 9999999999999999999999999999999999999 699999999999999999999986 6776 789999999999
Q ss_pred HHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCccc
Q 019713 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDN 323 (337)
Q Consensus 254 R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~ 323 (337)
|+++++|+++|+++++|+. +||||||++++|+||+++++|+|+.+++.++. .+++.++++++|++.-
T Consensus 151 r~~~~la~~lgv~~~~v~~-~v~G~Hg~t~~p~~s~~~v~g~~~~~~~~~~~--~~~~~~~v~~~g~eii 217 (309)
T 1ur5_A 151 RYRTFIAMEAGVSVEDVQA-MLMGGHGDEMVPLPRFSCISGIPVSEFIAPDR--LAQIVERTRKGGGEIV 217 (309)
T ss_dssp HHHHHHHHHHTCCGGGEEE-CCEECSGGGEECCGGGEEETTEEGGGTSCHHH--HHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhCCChhheeE-EEecCcCCceeeeeecceeCCEeHHHHcCHhH--HHHHHHHHHhhhHHhh
Confidence 9999999999999999995 99999999999999999999999999875544 3678888888777653
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=332.21 Aligned_cols=216 Identities=21% Similarity=0.264 Sum_probs=187.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC--cccEEEecCcccccC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYELFE 171 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~--~~~v~i~t~~~eal~ 171 (337)
++++||+|||| |.||+++++.|+..+++ .+.|+|+ +++++++.++|+++..... ..+++.++ ++++++
T Consensus 2 ~~~~kI~VIGa-G~vG~~ia~~la~~g~~------~v~L~Di--~~~~l~~~~~~l~~~~~~~~~~~~i~~t~-d~~al~ 71 (322)
T 1t2d_A 2 APKAKIVLVGS-GMIGGVMATLIVQKNLG------DVVLFDI--VKNMPHGKALDTSHTNVMAYSNCKVSGSN-TYDDLA 71 (322)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCC------EEEEECS--SSSHHHHHHHHHHTHHHHHTCCCCEEEEC-CGGGGT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCC------eEEEEeC--CHHHHHHHHHHHHhhhhhcCCCcEEEECC-CHHHhC
Confidence 45679999996 99999999999998875 1445554 5688999999999874322 23455544 569999
Q ss_pred CCcEEEEecccCCCCCCc-----hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEE
Q 019713 172 DAEWALLIGAKPRGPGME-----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (337)
Q Consensus 172 dADvVIitag~prk~g~~-----R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG 245 (337)
|||+||+++|.|+++|++ |.|++.+|+++++++++.|+++ +|++++|++|||+|++|+++++.+ ++|+ |+||
T Consensus 72 ~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNP~~~~t~~~~~~~-g~~~~rviG 149 (322)
T 1t2d_A 72 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVTNPVDVMVQLLHQHS-GVPKNKIIG 149 (322)
T ss_dssp TCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSSHHHHHHHHHHHH-CCCGGGEEE
T ss_pred CCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCChHHHHHHHHHhc-CCChHHEEe
Confidence 999999999999999999 9999999999999999999999 699999999999999999999986 5666 8899
Q ss_pred ecCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccc----hHHHHHHHHhccCc
Q 019713 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKVRLV 321 (337)
Q Consensus 246 ~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~----~~e~~~~v~~~g~~ 321 (337)
+||.||++|++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++++. |. .+++.+.++++|++
T Consensus 150 ~gt~ld~~R~~~~la~~lgv~~~~v~~-~v~G~HG~~~~p~~s~~~v~g~~~~~~~~~~-~~~~~~~~~~~~~v~~~g~e 227 (322)
T 1t2d_A 150 LGGVLDTSRLKYYISQKLNVCPRDVNA-HIVGAHGNKMVLLKRYITVGGIPLQEFINNK-LISDAELEAIFDRTVNTALE 227 (322)
T ss_dssp CCHHHHHHHHHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHHTT-SSCHHHHHHHHHHHHTHHHH
T ss_pred ccCcccHHHHHHHHHHHhCCCHHHeEE-EEEcCCCCcEEeeHHHceECcEeHHHhcccc-CCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 8999999999999999999999999987654 43 46688888888876
Q ss_pred cc
Q 019713 322 DN 323 (337)
Q Consensus 322 ~~ 323 (337)
.-
T Consensus 228 ii 229 (322)
T 1t2d_A 228 IV 229 (322)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-42 Score=327.43 Aligned_cols=215 Identities=19% Similarity=0.292 Sum_probs=171.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
+||+|||| |.||+++++.|+..+++++ |. |+|+ +++++++.++|+.|.. ++.....++.+++++++|||+|
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~e---V~--L~D~--~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~a~~~aDvV 71 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSE---LV--LVDR--DEDRAQAEAEDIAHAA-PVSHGTRVWHGGHSELADAQVV 71 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSE---EE--EECS--SHHHHHHHHHHHTTSC-CTTSCCEEEEECGGGGTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCE---EE--EEeC--CHHHHHHHHHhhhhhh-hhcCCeEEEECCHHHhCCCCEE
Confidence 59999996 9999999999999987653 44 4444 5678899999999876 4444444444568999999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEEecCchhHHHHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAK 256 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~LDs~R~~ 256 (337)
|++++.|++||++|.|++.+|+++++++++.|+++ +|++++|++|||+|++++++++.+ .|.|+||+||.||++|++
T Consensus 72 Ii~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~~~~~~~~~~~~--~~~rviG~gt~Ld~~r~~ 148 (304)
T 2v6b_A 72 ILTAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVDLLTDLATQLA--PGQPVIGSGTVLDSARFR 148 (304)
T ss_dssp EECC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSHHHHHHHHHHHS--CSSCEEECTTHHHHHHHH
T ss_pred EEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCchHHHHHHHHHhC--ChhcEEeCCcCchHHHHH
Confidence 99999999999999999999999999999999999 799999999999999999999987 345889999999999999
Q ss_pred HHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcc--c---chHHHHHHHHhccCcccc
Q 019713 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK--W---LEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 257 ~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~--~---~~~e~~~~v~~~g~~~~~ 324 (337)
.++|+++|+++++|+. +||||||++++|+||+++++|+|+.+++++.. | ..+++.++++++|++.-.
T Consensus 149 ~~la~~l~v~~~~v~~-~v~G~Hg~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~ 220 (304)
T 2v6b_A 149 HLMAQHAGVDGTHAHG-YVLGEHGDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIE 220 (304)
T ss_dssp HHHHHHHTSCGGGEEC-CEEESSSTTEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC-------
T ss_pred HHHHHHhCcCHHHceE-EEecCCCCceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999997 99999999999999999999999999876544 5 346899999999987754
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-42 Score=329.81 Aligned_cols=214 Identities=20% Similarity=0.295 Sum_probs=184.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC--cccEEEecCcccccCCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYELFEDA 173 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~--~~~v~i~t~~~eal~dA 173 (337)
++||+|||| |.+|+++|+.|+..+++ .+.|+|+ +++++++.++|+.|....+ ..+++.++ ++++++||
T Consensus 14 ~~kI~ViGa-G~vG~~iA~~la~~g~~------~V~L~Di--~~~~l~~~~~~l~~~~~~~~~~~~i~~t~-d~~al~~a 83 (328)
T 2hjr_A 14 RKKISIIGA-GQIGSTIALLLGQKDLG------DVYMFDI--IEGVPQGKALDLNHCMALIGSPAKIFGEN-NYEYLQNS 83 (328)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCC------EEEEECS--STTHHHHHHHHHHHHHHHHTCCCCEEEES-CGGGGTTC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCC------eEEEEEC--CHHHHHHHHHHHHhHhhccCCCCEEEECC-CHHHHCCC
Confidence 469999996 99999999999998874 1445544 5688999899999875322 23566655 46999999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs 252 (337)
|+||+++|.|++||++|.|++.+|+++++++++.|+++ +|++++|++|||+|++|+++++.+ ++|+ |+||+||.||+
T Consensus 84 D~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~t~~~~~~~-~~~~~rviG~~t~Ld~ 161 (328)
T 2hjr_A 84 DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKY-CPNAFVICITNPLDAMVYYFKEKS-GIPANKVCGMSGVLDS 161 (328)
T ss_dssp SEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEESCHHHHH
T ss_pred CEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHH-CCCeEEEEecCchHHHHHHHHHhc-CCChhhEEEeCcHHHH
Confidence 99999999999999999999999999999999999999 699999999999999999999876 5666 88999999999
Q ss_pred HHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccch----HHHHHHHHhccCccc
Q 019713 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLE----EGFTETIQKVRLVDN 323 (337)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~----~e~~~~v~~~g~~~~ 323 (337)
+|++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++++ .|.. +++.+.++++|++.-
T Consensus 162 ~R~~~~la~~lgv~~~~v~~-~v~G~Hg~t~~p~~s~~~v~G~~~~~~~~~-~~~~~~~~~~~~~~v~~~g~eii 234 (328)
T 2hjr_A 162 ARFRCNLSRALGVKPSDVSA-IVVGGHGDEMIPLTSSVTIGGILLSDFVEQ-GKITHSQINEIIKKTAFGGGEIV 234 (328)
T ss_dssp HHHHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHHT-TSSCHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHeeE-EEecCCCCceeeeeeeceECCEEHHHHhhc-cCCCHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999996 899999999999999999999999998765 4532 567777888776553
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-41 Score=323.55 Aligned_cols=218 Identities=22% Similarity=0.256 Sum_probs=185.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccC--CcccEEEecCcccccC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--LLREVKIGINPYELFE 171 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~--~~~~v~i~t~~~eal~ 171 (337)
.+++||+|||| |.+|++++..|+..+++ .+.|+|+ +++++++.++|++|.... ...+++.+++..++++
T Consensus 7 ~~~~kI~VIGa-G~vG~~lA~~la~~g~~------~V~L~D~--~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~ 77 (331)
T 1pzg_A 7 QRRKKVAMIGS-GMIGGTMGYLCALRELA------DVVLYDV--VKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALT 77 (331)
T ss_dssp SCCCEEEEECC-SHHHHHHHHHHHHHTCC------EEEEECS--SSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCC------eEEEEEC--ChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhC
Confidence 44579999996 99999999999998874 2445554 567899988999987522 2335666655445999
Q ss_pred CCcEEEEecccCCCCCC-----chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEE
Q 019713 172 DAEWALLIGAKPRGPGM-----ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (337)
Q Consensus 172 dADvVIitag~prk~g~-----~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG 245 (337)
|||+||+++|.|+++|+ +|.|++.+|+++++++++.|+++ +|++++|++|||+|++|+++++.+ ++|+ |+||
T Consensus 78 ~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~vi~~tNP~~~~t~~~~~~~-~~~~~rviG 155 (331)
T 1pzg_A 78 GADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVTNPLDCMVKVMCEAS-GVPTNMICG 155 (331)
T ss_dssp TCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEE
T ss_pred CCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEEcCchHHHHHHHHHhc-CCChhcEEe
Confidence 99999999999999999 99999999999999999999999 699999999999999999999987 6665 8899
Q ss_pred ecCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccc----hHHHHHHHHhccCc
Q 019713 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKVRLV 321 (337)
Q Consensus 246 ~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~----~~e~~~~v~~~g~~ 321 (337)
+||.||++|++++||+++|+++++|+. +|||+||+++||+||+++++|+|+.+++++ .|. .+++.+.++++|++
T Consensus 156 ~gt~LD~~R~~~~la~~lgv~~~~v~~-~v~G~Hg~~~~p~~s~~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~e 233 (331)
T 1pzg_A 156 MACMLDSGRFRRYVADALSVSPRDVQA-TVIGTHGDCMVPLVRYITVNGYPIQKFIKD-GVVTEKQLEEIAEHTKVSGGE 233 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHHT-TSSCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCHHHceE-EEecCCCCCEeeeeecceECCEEHHHHhhc-ccCCHHHHHHHHHHHHhccHH
Confidence 999999999999999999999999996 999999999999999999999999998754 243 35677777777776
Q ss_pred ccc
Q 019713 322 DNF 324 (337)
Q Consensus 322 ~~~ 324 (337)
.-.
T Consensus 234 ii~ 236 (331)
T 1pzg_A 234 IVR 236 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 533
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-40 Score=312.72 Aligned_cols=213 Identities=22% Similarity=0.326 Sum_probs=182.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccC--CcccEEEecCcccccCCCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--LLREVKIGINPYELFEDAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~--~~~~v~i~t~~~eal~dAD 174 (337)
|||+|||| |.+|++++..|+..++.. .|. ++| ++++++++.++|+.|.... ...++..++ +++++++||
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~---~V~--l~D--~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~-d~~~l~~aD 71 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLAR---ELV--LLD--VVEGIPQGKALDMYESGPVGLFDTKVTGSN-DYADTANSD 71 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCS---EEE--EEC--SSSSHHHHHHHHHHTTHHHHTCCCEEEEES-CGGGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCC---EEE--EEe--CChhHHHHHHHhHHhhhhcccCCcEEEECC-CHHHHCCCC
Confidence 59999996 999999999999876532 244 444 4567888888888876321 123455544 567799999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~ 253 (337)
+||++++.|++||++|.|++.+|+++++++++.|+++ +|++++|++|||+|++++++++.+ ++|+ |+||.||.||++
T Consensus 72 vViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~viv~tNP~~~~~~~~~~~~-~~~~~rviG~gt~ld~~ 149 (310)
T 1guz_A 72 IVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVSNPLDIMTHVAWVRS-GLPKERVIGMAGVLDAA 149 (310)
T ss_dssp EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECCSSHHHHHHHHHHHH-CSCGGGEEEECHHHHHH
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEEcCchHHHHHHHHHhc-CCChHHEEECCCchHHH
Confidence 9999999999999999999999999999999999999 799999999999999999999986 6776 789999999999
Q ss_pred HHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCccc
Q 019713 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDN 323 (337)
Q Consensus 254 R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~ 323 (337)
|+++++|+++|+++++|+. +||||||++++|+||+++++|+|+.+++.++. .+++.++++++|++.-
T Consensus 150 r~~~~la~~l~v~~~~v~~-~v~G~Hg~~~~p~~s~~~v~g~~~~~~~~~~~--~~~~~~~v~~~g~~ii 216 (310)
T 1guz_A 150 RFRSFIAMELGVSMQDINA-CVLGGHGDAMVPVVKYTTVAGIPISDLLPAET--IDKLVERTRNGGAEIV 216 (310)
T ss_dssp HHHHHHHHHHTCCGGGEEC-CEEECSGGGEEECGGGCEETTEEHHHHSCHHH--HHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhCCCHHHeEE-EEEcccCCcEeeeeecccCCCEEHHHHCCHHH--HHHHHHHHHHhHHHHH
Confidence 9999999999999999996 99999999999999999999999999875544 3678888888777653
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=311.13 Aligned_cols=201 Identities=15% Similarity=0.149 Sum_probs=166.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
++++||+|||| |+||+++++.|+..+++++ +.|+|++ ++ +.|.++|+.|... .+++.++ ++++++||
T Consensus 12 ~~~~kV~ViGa-G~vG~~~a~~l~~~g~~~e-----v~L~Di~--~~-~~g~a~dl~~~~~---~~i~~t~-d~~~l~~a 78 (303)
T 2i6t_A 12 KTVNKITVVGG-GELGIACTLAISAKGIADR-----LVLLDLS--EG-TKGATMDLEIFNL---PNVEISK-DLSASAHS 78 (303)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHHHHTCCSE-----EEEECCC--------CHHHHHHHTC---TTEEEES-CGGGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCE-----EEEEcCC--cc-hHHHHHHHhhhcC---CCeEEeC-CHHHHCCC
Confidence 44689999995 9999999999999998653 4556654 45 7889999998543 2677764 57999999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs 252 (337)
|+||+++|.| +|||+|.|++.+|++|+++++++|+++ +|++++|++|||+|++|+++++.+ ++|+ |+||+||.||+
T Consensus 79 D~Vi~aag~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~sNP~~~~t~~~~~~~-~~p~~rviG~gt~Ld~ 155 (303)
T 2i6t_A 79 KVVIFTVNSL-GSSQSYLDVVQSNVDMFRALVPALGHY-SQHSVLLVASQPVEIMTYVTWKLS-TFPANRVIGIGCNLDS 155 (303)
T ss_dssp SEEEECCCC-----CCHHHHHHHHHHHHHHHHHHHHHH-TTTCEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHHH
T ss_pred CEEEEcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEcCChHHHHHHHHHHhc-CCCHHHeeCCCCCchH
Confidence 9999999996 799999999999999999999999999 699999999999999999999987 6766 88999999999
Q ss_pred HHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccc
Q 019713 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~ 324 (337)
+|++++||+++|+++++|+. +||||||++++|+||+.. .|..+++.++++++|++.-.
T Consensus 156 ~R~~~~la~~lgv~~~~v~~-~v~G~Hg~s~~p~~s~~~-------------~~~~~~~~~~~~~~g~eii~ 213 (303)
T 2i6t_A 156 QRLQYIITNVLKAQTSGKEV-WVIGEQGEDKVLTWSGQE-------------EVVSHTSQVQLSNRAMELLR 213 (303)
T ss_dssp HHHHHHHHHTSCCTTGGGGE-EEEBSCSSSCEEEEBCSS-------------CCCCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHcCCChHHeEE-EEecCCCCCccccccccc-------------cccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999995 999999999999999951 14456788888888876643
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=311.77 Aligned_cols=207 Identities=25% Similarity=0.294 Sum_probs=171.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--cCcc-cccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPY-ELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t~~~-eal~dA 173 (337)
|||+||||+|+||+++++.|+..++.. .|.|+|++. ++++++||.|...+ .+++.+ ++++ ++++||
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~-----ev~L~Di~~----~~~~a~dL~~~~~~--~~l~~~~~t~d~~~a~~~a 69 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVS-----RLTLYDIAH----TPGVAADLSHIETR--ATVKGYLGPEQLPDCLKGC 69 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCS-----EEEEEESSS----HHHHHHHHTTSSSS--CEEEEEESGGGHHHHHTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCc-----EEEEEeCCc----cHHHHHHHhccCcC--ceEEEecCCCCHHHHhCCC
Confidence 599999977999999999999888753 355666653 67899999997643 245553 2455 479999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHH---HHHCCCCCC-CeEEecCc
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPA-KNFHALTR 249 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~---~k~s~~~p~-kvIG~gT~ 249 (337)
|+||+++|.|+++|++|.|++.+|+++++++++.|+++ +|+++||++|||+|++|+++ .+..+++|+ |+||. |.
T Consensus 70 DvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~-t~ 147 (314)
T 1mld_A 70 DVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGV-TT 147 (314)
T ss_dssp SEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEEC-CH
T ss_pred CEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEe-ec
Confidence 99999999999999999999999999999999999999 69999999999999998643 334446776 78899 99
Q ss_pred hhHHHHHHHHHHHhCCCcccccceEEEecc-CCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccc
Q 019713 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 250 LDs~R~~~~lA~~lgv~~~~V~~v~V~GnH-G~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~ 324 (337)
||++|++++||+++|++|++|+ ++||||| |++++|+||+++ |+.+ +.++. .+++.++++++|++.-.
T Consensus 148 Ld~~r~~~~la~~l~v~~~~v~-~~v~G~H~G~~~~p~~s~~~----~~~~-~~~~~--~~~~~~~v~~~g~eii~ 215 (314)
T 1mld_A 148 LDIVRANAFVAELKGLDPARVS-VPVIGGHAGKTIIPLISQCT----PKVD-FPQDQ--LSTLTGRIQEAGTEVVK 215 (314)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCB-CCEEECSSGGGEEECGGGCB----SCCC-CCHHH--HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhCcChHhEE-EEEccCCCCCcEeeecccCC----Cccc-CCHHH--HHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 5999999 799999999998 3333 22222 36888899888877643
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-38 Score=300.63 Aligned_cols=214 Identities=23% Similarity=0.366 Sum_probs=182.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+|||| |.||++++..|+..+..++ |.+ + |++++++++.++|+.+.. ++.....+...+++++++||+|
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~---V~l--~--D~~~~~~~~~~~~l~~~~-~~~~~~~i~~~d~~~~~~aDvV 71 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFARE---MVL--I--DVDKKRAEGDALDLIHGT-PFTRRANIYAGDYADLKGSDVV 71 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE--E--CSSHHHHHHHHHHHHHHG-GGSCCCEEEECCGGGGTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCe---EEE--E--eCChHHHHHHHHHHHhhh-hhcCCcEEEeCCHHHhCCCCEE
Confidence 59999996 9999999999998887532 544 4 456678888888888765 2322223322358899999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R~ 255 (337)
|++.+.|++||++|.|++.+|+++++++++.|+++ +|++++|++|||++++++++++.+ ++|+ |+||++|.||++|+
T Consensus 72 iiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~ii~~tNp~~~~~~~~~~~~-~~~~~rviG~~t~ld~~r~ 149 (319)
T 1a5z_A 72 IVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVTNPVDVLTYFFLKES-GMDPRKVFGSGTVLDTARL 149 (319)
T ss_dssp EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHHHHHH-TCCTTTEEECTTHHHHHHH
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCcHHHHHHHHHHHh-CCChhhEEeeCccHHHHHH
Confidence 99999999999999999999999999999999999 699999999999999999999987 5655 88999999999999
Q ss_pred HHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcc-cc---hHHHHHHHHhccCcc
Q 019713 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-WL---EEGFTETIQKVRLVD 322 (337)
Q Consensus 256 ~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~-~~---~~e~~~~v~~~g~~~ 322 (337)
+.++|+++|+++.+|+. +||||||++++|+||+++++|+|+.+++++.. |. .+++.+.++++|+++
T Consensus 150 ~~~la~~lgv~~~~v~~-~v~G~hg~~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~ei 219 (319)
T 1a5z_A 150 RTLIAQHCGFSPRSVHV-YVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEI 219 (319)
T ss_dssp HHHHHHHHTCCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCHHHceE-EEEeCCCCCcccchhhceECCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhh
Confidence 99999999999999996 99999999999999999999999999876543 42 367888888888765
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=298.41 Aligned_cols=208 Identities=21% Similarity=0.233 Sum_probs=169.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE---ecCccccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI---GINPYELF 170 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i---~t~~~eal 170 (337)
++++||+||||+|+||++++..|+..++.. .+.|+|++. + ++.++||.|...+ .++.. +++..+++
T Consensus 6 ~~~mKI~ViGAaG~VG~~la~~L~~~g~~~-----ev~l~Di~~--~--~~~~~dL~~~~~~--~~v~~~~~t~d~~~al 74 (326)
T 1smk_A 6 APGFKVAILGAAGGIGQPLAMLMKMNPLVS-----VLHLYDVVN--A--PGVTADISHMDTG--AVVRGFLGQQQLEAAL 74 (326)
T ss_dssp --CEEEEEETTTSTTHHHHHHHHHHCTTEE-----EEEEEESSS--H--HHHHHHHHTSCSS--CEEEEEESHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCCC-----EEEEEeCCC--c--HhHHHHhhccccc--ceEEEEeCCCCHHHHc
Confidence 456899999977999999999998877643 355566543 3 7788999986532 23433 22335789
Q ss_pred CCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh----HHHHHHHHCCCCCC-CeEE
Q 019713 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT----NALICLKNAPSIPA-KNFH 245 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~----~t~i~~k~s~~~p~-kvIG 245 (337)
+|||+||+++|.|+++|++|.+++.+|+++++++++.++++ +|+++|+++|||+|+ +|+.+++.+ ++|+ |+||
T Consensus 75 ~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~-~p~~~viv~SNPv~~~~~~~t~~~~~~~-~~p~~rviG 152 (326)
T 1smk_A 75 TGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKC-CPRAIVNLISNPVNSTVPIAAEVFKKAG-TYDPKRLLG 152 (326)
T ss_dssp TTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHHHHHT-CCCTTSEEE
T ss_pred CCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEECCchHHHHHHHHHHHHHcc-CCCcccEEE
Confidence 99999999999999999999999999999999999999998 699999999999999 555557776 6776 7889
Q ss_pred ecCchhHHHHHHHHHHHhCCCcccccceEEEecc-CCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCccc
Q 019713 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDN 323 (337)
Q Consensus 246 ~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnH-G~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~ 323 (337)
+ |.||++|++++||+++|++|++|+ ++||||| |++++|+||+++|.+. +.++. .+++.++++++|++.-
T Consensus 153 ~-~~Ld~~r~~~~la~~l~v~~~~v~-~~v~G~H~G~~~~p~~s~~~v~~~-----~~~~~--~~~~~~~v~~~g~eii 222 (326)
T 1smk_A 153 V-TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPSS-----FTQEE--ISYLTDRIQNGGTEVV 222 (326)
T ss_dssp C-CHHHHHHHHHHHHHHHTCCGGGCB-CCEEECSSGGGEEECGGGCBSCCC-----CCHHH--HHHHHHHHHHHHHHHH
T ss_pred E-eehHHHHHHHHHHHHhCcChhheE-EEEecccCCceEEEecccCeecCc-----CCHHH--HHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999999 5999999 8999999999998642 22222 3678888888777653
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=286.69 Aligned_cols=214 Identities=18% Similarity=0.229 Sum_probs=175.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|+||+|||| |.||++++..|+..++.. .|.+ + |++++++++.++|+.|.......++.+.+++++++++||+
T Consensus 1 m~kI~VIGa-G~~G~~la~~L~~~g~~~---~V~l--~--d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~aDv 72 (309)
T 1hyh_A 1 ARKIGIIGL-GNVGAAVAHGLIAQGVAD---DYVF--I--DANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADV 72 (309)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCS---EEEE--E--CSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCC---EEEE--E--cCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCHHHhCCCCE
Confidence 479999995 999999999999888632 2544 4 4567788888888887653222234442345699999999
Q ss_pred EEEecccCCC----CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCch
Q 019713 176 ALLIGAKPRG----PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRL 250 (337)
Q Consensus 176 VIitag~prk----~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~L 250 (337)
||++.+.|++ ||++|.|++.+|+++++++++.|+++ +|++++|++|||+|++++++++.+ ++|+ |+||.+|.|
T Consensus 73 Viiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~~~~~ii~~tNp~~~~~~~~~~~~-~~~~~rvig~gt~l 150 (309)
T 1hyh_A 73 VISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVISNPVDVITALFQHVT-GFPAHKVIGTGTLL 150 (309)
T ss_dssp EEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHH
T ss_pred EEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEEcCcHHHHHHHHHHhc-CCCHHHEeecCccc
Confidence 9999999998 99999999999999999999999998 699999999999999999999976 5665 889999999
Q ss_pred hHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhh--hhcccchHHHHHHHHhccCcc
Q 019713 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEII--KDHKWLEEGFTETIQKVRLVD 322 (337)
Q Consensus 251 Ds~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i--~~~~~~~~e~~~~v~~~g~~~ 322 (337)
|++|++..+++++++++.+|+. ++|||||++++|+||+++++|+|+.+++ .++.| +++.+.++++|+++
T Consensus 151 d~~r~~~~~a~~l~~~~~~v~~-~v~G~hg~~~~~~~s~~~v~g~~~~~~~~~~~~~~--~~~~~~v~~~g~~i 221 (309)
T 1hyh_A 151 DTARMQRAVGEAFDLDPRSVSG-YNLGEHGNSQFVAWSTVRVMGQPIVTLADAGDIDL--AAIEEEARKGGFTV 221 (309)
T ss_dssp HHHHHHHHHHHHHTCCGGGCBC-CEEBCTTTTCEECTTTCEETTEEGGGC-----CCH--HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCChhheEE-EEEeCCCCcEeeccccceECCEEHHHhccCCHHHH--HHHHHHHHHhHHHH
Confidence 9999999999999999999995 8999999999999999999999999884 33333 67888888888775
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=283.25 Aligned_cols=216 Identities=20% Similarity=0.249 Sum_probs=178.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhcc--CCcccEEEecCccccc
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELF 170 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~--~~~~~v~i~t~~~eal 170 (337)
|++++||+|||| |.||++++..|+..++. .|. |+|+ +++++++.++|+.+... ....++..++ +++++
T Consensus 1 M~~~~kI~VIGa-G~~G~~ia~~la~~g~~----~V~--l~D~--~~~~~~~~~~~l~~~~~~~~~~~~i~~t~-d~~a~ 70 (317)
T 2ewd_A 1 MIERRKIAVIGS-GQIGGNIAYIVGKDNLA----DVV--LFDI--AEGIPQGKALDITHSMVMFGSTSKVIGTD-DYADI 70 (317)
T ss_dssp CCCCCEEEEECC-SHHHHHHHHHHHHHTCC----EEE--EECS--SSSHHHHHHHHHHHHHHHHTCCCCEEEES-CGGGG
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCc----eEE--EEeC--CchHHHHHHHHHHhhhhhcCCCcEEEECC-CHHHh
Confidence 456689999996 99999999999998863 144 4444 55778887888887642 1223566554 45899
Q ss_pred CCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCC-CCeEEecCc
Q 019713 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP-AKNFHALTR 249 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p-~kvIG~gT~ 249 (337)
++||+||+++|.|++||++|.|++.+|.++++++++.|+++ +|++++|++|||++++++++++.+ ++| .|+||.+|.
T Consensus 71 ~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~-~~~~iii~~sNp~~~~~~~~~~~~-~~~~~rviG~~t~ 148 (317)
T 2ewd_A 71 SGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKY-CPNAFVICITNPLDVMVSHFQKVS-GLPHNKVCGMAGV 148 (317)
T ss_dssp TTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHH-CCCGGGEEESCHH
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEeCChHHHHHHHHHHhh-CCCHHHEEeccCc
Confidence 99999999999999999999999999999999999999999 689999999999999999999987 564 488999999
Q ss_pred hhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccc---hHHHHHHHHhccCc
Q 019713 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL---EEGFTETIQKVRLV 321 (337)
Q Consensus 250 LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~---~~e~~~~v~~~g~~ 321 (337)
+|+.|++.++|+++|+++.++++ +|||+||++++|+||.++++|+|+.+++.+..+. .+++.+.++.++++
T Consensus 149 ld~~r~~~~la~~lg~~~~~v~~-~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~e 222 (317)
T 2ewd_A 149 LDSSRFRTFIAQHFGVNASDVSA-NVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKE 222 (317)
T ss_dssp HHHHHHHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcChhhceE-EEEecCCCceeEEeeccccCCEEHHHHHhccCCCHHHHHHHHHHHHhhHHH
Confidence 99999999999999999999996 8999999999999999999999999887542112 23444544444443
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=275.65 Aligned_cols=231 Identities=52% Similarity=0.828 Sum_probs=196.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d 172 (337)
|++++||.|+||+|+||++++..|+..+.++.++...++++|.+...+++++.++|+.|...++..++..+.+.+++++|
T Consensus 1 m~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~ 80 (327)
T 1y7t_A 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD 80 (327)
T ss_dssp CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCC
Confidence 45668999999889999999999999887654444466777765445678888999998654444566666667889999
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEEecCchhH
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDE 252 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~LDs 252 (337)
+|+||.+||.|+++|++|.+++..|+.+++++++.++++++|+++++++|||+|.++++..+.++++|+..+.+.|.||+
T Consensus 81 ~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~~~~~~~~~p~~~yg~tkl~~ 160 (327)
T 1y7t_A 81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDH 160 (327)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHH
T ss_pred CCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHHHHHcCCCChhheeccchHHH
Confidence 99999999999999999999999999999999999999833899999999999999999888764576666677799999
Q ss_pred HHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccc
Q 019713 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~ 324 (337)
.|++..+++++|+++..++..+|||+||++++|+|+++.++|+|+.+++.+ .|..+++.++++++|++.-.
T Consensus 161 er~~~~~a~~~g~~~~~vr~~~V~G~h~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~~v~~~g~~ii~ 231 (327)
T 1y7t_A 161 NRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDM-EWYEKVFIPTVAQRGAAIIQ 231 (327)
T ss_dssp HHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTSCH-HHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcChhheeeeEEEcCCCCeEEEEeeeeeeCCeeHHHhccc-hhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999966899999999999999999999999987643 56678899999999987643
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=99.98 E-value=3.9e-32 Score=272.26 Aligned_cols=220 Identities=16% Similarity=0.113 Sum_probs=167.7
Q ss_pred CCCEEEEEcCCCch-HHHHHHHHHH--cCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc---cCCcccEEEecCccc
Q 019713 95 KMVNIAVSGAAGMI-ANHLLFKLAA--GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL---FPLLREVKIGINPYE 168 (337)
Q Consensus 95 ~~~KI~IIGAaG~V-G~~la~~L~~--~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~---~~~~~~v~i~t~~~e 168 (337)
+.+||+|||| |++ |..++..|+. .++-. -.+.|+|++...+++++. .|+.+.. .....+++.++|.++
T Consensus 6 ~~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~----~ev~L~Di~~~~e~~~~~-~~~~~~~~~~~~~~~~i~~t~D~~e 79 (450)
T 1s6y_A 6 KRLKIATIGG-GSSYTPELVEGLIKRYHELPV----GELWLVDIPEGKEKLEIV-GALAKRMVEKAGVPIEIHLTLDRRR 79 (450)
T ss_dssp -CEEEEEETT-TCTTHHHHHHHHHHTTTTCCE----EEEEEECCGGGHHHHHHH-HHHHHHHHHHTTCCCEEEEESCHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCCCCC----CEEEEEEcCCChHHHHHH-HHHHHHHHhhcCCCcEEEEeCCHHH
Confidence 3579999996 888 7777777876 45411 135566664422777763 3444422 123345666655569
Q ss_pred ccCCCcEEEEecccCCCCCCchhhh--------------------HHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhH
Q 019713 169 LFEDAEWALLIGAKPRGPGMERAGL--------------------LDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (337)
Q Consensus 169 al~dADvVIitag~prk~g~~R~dl--------------------l~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~ 228 (337)
+++|||+||+++|.+++||++|.++ +.+|+++++++++.|+++ ||+||+|++|||+|++
T Consensus 80 al~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~-~P~a~ii~~tNPvdiv 158 (450)
T 1s6y_A 80 ALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFTNPAGMV 158 (450)
T ss_dssp HHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHH
T ss_pred HhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHH-CCCeEEEEeCCcHHHH
Confidence 9999999999999999999888744 789999999999999999 7999999999999999
Q ss_pred HHHHHHHCCCCCC-CeEEecCchhHHHHHHHHHHHhCCCcccccceEEEe-ccCCCcccccccceEcCeehhhhhhhc--
Q 019713 229 ALICLKNAPSIPA-KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKDH-- 304 (337)
Q Consensus 229 t~i~~k~s~~~p~-kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~G-nHG~t~vp~~S~a~V~G~pl~e~i~~~-- 304 (337)
|++++|.+ |+ |+||+|+.++ |++..+|+.+|+++++|+. +|+| || ++||++++.+|.++...+...
T Consensus 159 T~a~~k~~---p~~rViG~c~~~~--r~~~~la~~lgv~~~~v~~-~v~GlNH----~~w~~~v~~~G~d~~p~~~~~~~ 228 (450)
T 1s6y_A 159 TEAVLRYT---KQEKVVGLCNVPI--GMRMGVAKLLGVDADRVHI-DFAGLNH----MVFGLHVYLDGVEVTEKVIDLVA 228 (450)
T ss_dssp HHHHHHHC---CCCCEEECCSHHH--HHHHHHHHHHTSCGGGEEE-EEEEETT----EEEEEEEEETTEECHHHHHHHHS
T ss_pred HHHHHHhC---CCCCEEEeCCcHH--HHHHHHHHHhCCCHHHcEE-EEEeeec----ceeEEEeeeCCcCchHhHHHHHh
Confidence 99999986 44 8999999985 9999999999999999995 9999 88 788888888888776654321
Q ss_pred ----------ccchHHH-HHHHHhccCcccceeheeee
Q 019713 305 ----------KWLEEGF-TETIQKVRLVDNFTLILFVM 331 (337)
Q Consensus 305 ----------~~~~~e~-~~~v~~~g~~~~~~l~~~~~ 331 (337)
.|....+ .+.++..|..|+.|+.|||+
T Consensus 229 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~p~~y~~yy~~ 266 (450)
T 1s6y_A 229 HPDRSGVTMKNIVDLGWEPDFLKGLKVLPCPYHRYYFQ 266 (450)
T ss_dssp CC------------CCCCHHHHHHHCSBCCGGGHHHHS
T ss_pred hhccccccccccccCccHHHHHHhcCCccchhhhhhcC
Confidence 0100112 25566778888999988876
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=99.98 E-value=3e-31 Score=252.33 Aligned_cols=216 Identities=21% Similarity=0.310 Sum_probs=177.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCc--ccEEEecCcccccC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGINPYELFE 171 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~--~~v~i~t~~~eal~ 171 (337)
+++|||+|||| |.||+.++..|+..+.+++ |.+ + |++++++++.++|+.+.. ++. .++..+ .++++++
T Consensus 5 ~~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~---V~l--~--d~~~~~~~~~~~~~~~~~-~~~~~~~v~~~-~~~~~~~ 74 (319)
T 1lld_A 5 VKPTKLAVIGA-GAVGSTLAFAAAQRGIARE---IVL--E--DIAKERVEAEVLDMQHGS-SFYPTVSIDGS-DDPEICR 74 (319)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHHHTTCCSE---EEE--E--CSSHHHHHHHHHHHHHTG-GGSTTCEEEEE-SCGGGGT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCE---EEE--E--eCChhHHHHHHHHHHhhh-hhcCCeEEEeC-CCHHHhC
Confidence 44579999996 9999999999999887543 544 4 445677888888887765 232 233333 3578999
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCch
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRL 250 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~L 250 (337)
+||+||++.+.|++||++|.+++.+|+++++++++.|+++ +|+++||+++||++.+++++.+.+ ++|+ ++||++|.+
T Consensus 75 ~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~~~~~~~~~~-~~~~~~vig~~~~l 152 (319)
T 1lld_A 75 DADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLT-GLPENQIFGSGTNL 152 (319)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHH-TCCTTSEEECTTHH
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHHHHHHHHHhc-CCCHHHEeeccccH
Confidence 9999999999999999999999999999999999999998 799999999999999999988765 5665 788999999
Q ss_pred hHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccc------hHHHHHHHHhccCcc
Q 019713 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL------EEGFTETIQKVRLVD 322 (337)
Q Consensus 251 Ds~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~------~~e~~~~v~~~g~~~ 322 (337)
|+.|++..+++++++++.+++. ++||+||++++|+|+++.++|.|+.+++....|. .+++.+.+++.+++.
T Consensus 153 ~~~r~~~~~a~~~~v~~~~v~~-~~~G~~g~~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v 229 (319)
T 1lld_A 153 DSARLRFLIAQQTGVNVKNVHA-YIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKI 229 (319)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEC-CEEBSSSTTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHeEE-EEEeCCCCceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhh
Confidence 9999999999999999999986 8899999999999999999999999886443332 245555666555443
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=257.48 Aligned_cols=208 Identities=16% Similarity=0.099 Sum_probs=151.8
Q ss_pred CCEEEEEcCCCchHHH--HHHHHHH--cCC-CCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCccccc
Q 019713 96 MVNIAVSGAAGMIANH--LLFKLAA--GEV-LGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF 170 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~--la~~L~~--~~l-~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal 170 (337)
++||+|||| |++ .+ ++..|+. .++ .+ .|.|+|+ +++++++ +.|+.+.......+++.++|.++++
T Consensus 2 ~~KI~IIGa-G~v-~~~~l~~~l~~~~~~l~~~-----el~L~Di--~~~~~~~-~~~~~~~~~~~~~~v~~t~d~~~al 71 (417)
T 1up7_A 2 HMRIAVIGG-GSS-YTPELVKGLLDISEDVRID-----EVIFYDI--DEEKQKI-VVDFVKRLVKDRFKVLISDTFEGAV 71 (417)
T ss_dssp CCEEEEETT-TCT-THHHHHHHHHHHTTTSCCC-----EEEEECS--CHHHHHH-HHHHHHHHHTTSSEEEECSSHHHHH
T ss_pred CCEEEEECC-CHH-HHHHHHHHHHhcccCCCcC-----EEEEEeC--CHHHHHH-HHHHHHHHhhCCeEEEEeCCHHHHh
Confidence 579999996 775 33 2334565 565 33 3445555 5577776 6777774322113455544445999
Q ss_pred CCCcEEEEecccCCCCCCchh-------h-------------hHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHH
Q 019713 171 EDAEWALLIGAKPRGPGMERA-------G-------------LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~-------d-------------ll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~ 230 (337)
+|||+||+++|.+++||++|. + ++.+|+++++++++.|+++ | +||+|++|||+|++|+
T Consensus 72 ~~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~-~-~A~lin~TNPvdi~t~ 149 (417)
T 1up7_A 72 VDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKT-S-NATIVNFTNPSGHITE 149 (417)
T ss_dssp TTCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHT-T-CCEEEECSSSHHHHHH
T ss_pred CCCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHH-C-CEEEEEeCChHHHHHH
Confidence 999999999999999998884 3 2589999999999999999 7 9999999999999999
Q ss_pred HHHHHCCCCCC-CeEEecCchhHHHHHHHHHHHhCCCcccccceEEEe-----------ccCCCcccccccc---eEcCe
Q 019713 231 ICLKNAPSIPA-KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-----------NHSTTQVPDFLNA---RINGL 295 (337)
Q Consensus 231 i~~k~s~~~p~-kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~G-----------nHG~t~vp~~S~a---~V~G~ 295 (337)
+++|.+ |+ |+||+|+.++ |++..+|+.+|+++++|+. +|+| +||++++|.||.. +++|.
T Consensus 150 a~~k~~---p~~rviG~c~~~~--r~~~~la~~lgv~~~~v~~-~v~GlNH~~w~~~~~~hG~d~~p~~~~~~~~~~~~~ 223 (417)
T 1up7_A 150 FVRNYL---EYEKFIGLCNVPI--NFIREIAEMFSARLEDVFL-KYYGLNHLSFIEKVFVKGEDVTEKVFENLKLKLSNI 223 (417)
T ss_dssp HHHHTT---CCSSEEECCSHHH--HHHHHHHHHTTCCGGGEEE-EEEEETTEEEEEEEEETTEECHHHHHHHHTTC---C
T ss_pred HHHHhC---CCCCEEEeCCCHH--HHHHHHHHHhCCCHHHCeE-EEEeecceeeEEEeecCCcEehhhHHHHHHHhhCCC
Confidence 999976 44 8999999985 9999999999999999995 9999 6666666666664 44331
Q ss_pred ehhhhhhhcccchHHHHHHHHhccCcccceeheeee
Q 019713 296 PVKEIIKDHKWLEEGFTETIQKVRLVDNFTLILFVM 331 (337)
Q Consensus 296 pl~e~i~~~~~~~~e~~~~v~~~g~~~~~~l~~~~~ 331 (337)
.+..|. .+..+..|.-|+.|+.|||+
T Consensus 224 ------~~~~~~----~~~~~~~g~~p~~y~~~y~~ 249 (417)
T 1up7_A 224 ------PDEDFP----TWFYDSVRLIVNPYLRYYLM 249 (417)
T ss_dssp ------CTTSCC----HHHHHHHCSEECGGGHHHHT
T ss_pred ------cCCchH----HHHHHhcCCCccchhhhccC
Confidence 011121 22344557777777777665
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-31 Score=264.95 Aligned_cols=183 Identities=14% Similarity=0.071 Sum_probs=147.3
Q ss_pred CCEEEEEcCCCch-HHHHHHHHHHc--CCCCCCCceEEEeccccchhhHHHhHHHhHhhhc---cCCcccEEEecCcccc
Q 019713 96 MVNIAVSGAAGMI-ANHLLFKLAAG--EVLGPDQPIALKLLGSERSLQALEGVAMELEDSL---FPLLREVKIGINPYEL 169 (337)
Q Consensus 96 ~~KI~IIGAaG~V-G~~la~~L~~~--~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~---~~~~~~v~i~t~~~ea 169 (337)
.+||+|||| |.+ |..++..|+.. ++-+ -.+.|+|+ +++++++. .|+.+.. .....+++.++|.+++
T Consensus 28 ~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~----~eV~L~Di--~~e~~~~~-~~~~~~~l~~~~~~~~I~~t~D~~ea 99 (472)
T 1u8x_X 28 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPI----RKLKLYDN--DKERQDRI-AGACDVFIREKAPDIEFAATTDPEEA 99 (472)
T ss_dssp CEEEEEECT-TSSSHHHHHHHHHHTTTTSCE----EEEEEECS--CHHHHHHH-HHHHHHHHHHHCTTSEEEEESCHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHhCCCCCCC----CEEEEEeC--CHHHHHHH-HHHHHHHhccCCCCCEEEEECCHHHH
Confidence 469999996 888 55578788877 5522 13445554 55777774 4665532 1234467666655699
Q ss_pred cCCCcEEEEecccCCCCCCchhh--------------------hHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHH
Q 019713 170 FEDAEWALLIGAKPRGPGMERAG--------------------LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (337)
Q Consensus 170 l~dADvVIitag~prk~g~~R~d--------------------ll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t 229 (337)
++|||+||++++.++++|++|.+ ++.+|+++++++++.|+++ ||+||+|++|||+|++|
T Consensus 100 l~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~-~P~A~ii~~TNPvdi~T 178 (472)
T 1u8x_X 100 FTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKY-SPDAWMLNYSNPAAIVA 178 (472)
T ss_dssp HSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSCHHHHH
T ss_pred HcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHH-CCCeEEEEeCCcHHHHH
Confidence 99999999999998888888844 4889999999999999999 79999999999999999
Q ss_pred HHHHHHCCCCCCCeEEecCchhHHHHHHHHHHHhCCCc-ccccceEEEe-----------c-cCCCcccccccceE
Q 019713 230 LICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFY-DKVSNMTIWG-----------N-HSTTQVPDFLNARI 292 (337)
Q Consensus 230 ~i~~k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~-~~V~~v~V~G-----------n-HG~t~vp~~S~a~V 292 (337)
++++|.+| +.|+||+|+.++ |++..+|+.+|+++ ++|+. +|+| + ||++++|.||...+
T Consensus 179 ~~~~k~~p--~~rViG~c~~~~--r~~~~la~~lgv~~~~~v~~-~v~GlNH~~W~~~~~~~hG~d~~p~~~~~~~ 249 (472)
T 1u8x_X 179 EATRRLRP--NSKILNICDMPV--GIEDRMAQILGLSSRKEMKV-RYYGLNHFGWWTSIQDQEGNDLMPKLKEHVS 249 (472)
T ss_dssp HHHHHHST--TCCEEECCSHHH--HHHHHHHHHHTCSCGGGEEE-EEEEETTEEEEEEEEETTCCBCHHHHHHHHH
T ss_pred HHHHHhCC--CCCEEEeCCcHH--HHHHHHHHHhCcCchhceeE-EEeccchhhheeeeEeCCCCEehHhHHHHHH
Confidence 99999862 238999999986 99999999999997 99995 8999 8 88888888888665
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=248.49 Aligned_cols=211 Identities=15% Similarity=0.126 Sum_probs=160.2
Q ss_pred CCEEEEEcCCCchHHH--HHHHHHH-cCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc---cCCcccEEEecCcccc
Q 019713 96 MVNIAVSGAAGMIANH--LLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL---FPLLREVKIGINPYEL 169 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~--la~~L~~-~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~---~~~~~~v~i~t~~~ea 169 (337)
++||+|||| |.||.+ ++..|+. .++.+. +|. |+|+ +++++++. .++.+.. .....+++.++|.+++
T Consensus 3 ~~KIaVIGA-GsVg~g~ala~~La~~~~l~~~--eV~--L~Di--~~e~l~~~-~~~~~~~l~~~~~~~~I~~ttD~~ea 74 (480)
T 1obb_A 3 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGS--TVT--LMDI--DEERLDAI-LTIAKKYVEEVGADLKFEKTMNLDDV 74 (480)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTC--EEE--EECS--CHHHHHHH-HHHHHHHHHHTTCCCEEEEESCHHHH
T ss_pred CCEEEEECC-CchHHHHHHHHHHHhcCcCCCC--EEE--EEeC--CHHHHHHH-HHHHHHHhccCCCCcEEEEECCHHHH
Confidence 479999995 998644 4667774 333222 244 4554 55677763 3333321 1234467776655689
Q ss_pred cCCCcEEEEeccc------------CCCCCCch--hh------------hHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 FEDAEWALLIGAK------------PRGPGMER--AG------------LLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 l~dADvVIitag~------------prk~g~~R--~d------------ll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
++|||+||++++. |+|+|+.| .+ ++.+|+++++++++.|+++ ||+||+|++||
T Consensus 75 l~dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~-~P~A~ii~~TN 153 (480)
T 1obb_A 75 IIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKL-SPKAWYLQAAN 153 (480)
T ss_dssp HTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHH-CTTCEEEECSS
T ss_pred hCCCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 9999999999875 66777766 44 4889999999999999999 79999999999
Q ss_pred CchhHHHHHHHHCCCCCCCeEEecCchhHHHHHHHHHHHhCCCcccccceEEEe-ccCCCcccccccceEcCeehhhhhh
Q 019713 224 PCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIK 302 (337)
Q Consensus 224 Pvd~~t~i~~k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~G-nHG~t~vp~~S~a~V~G~pl~e~i~ 302 (337)
|+|++|++++|+. +.|+||+||.+|+ ++..+ +.+|+++++|+. +|+| || +.||.+.+.+|+++.+.+.
T Consensus 154 Pvdi~t~~~~k~p---~~rviG~c~~~~~--~~~~l-~~lgv~~~~v~~-~v~GlNH----~~w~~~~~~~G~D~~p~l~ 222 (480)
T 1obb_A 154 PIFEGTTLVTRTV---PIKAVGFCHGHYG--VMEIV-EKLGLEEEKVDW-QVAGVNH----GIWLNRFRYNGGNAYPLLD 222 (480)
T ss_dssp CHHHHHHHHHHHS---CSEEEEECSGGGH--HHHHH-HHTTCCGGGEEE-EEEEETT----EEEEEEEEETTEECHHHHH
T ss_pred cHHHHHHHHHHCC---CCcEEecCCCHHH--HHHHH-HHhCCCHHHceE-EEEeecc----hhhhhheeeCCeEcHHHHH
Confidence 9999999998842 3489999999995 78999 999999999995 9999 99 9999999999999987553
Q ss_pred hc------------ccch--HHH-HHHHHhccCccc-------cee
Q 019713 303 DH------------KWLE--EGF-TETIQKVRLVDN-------FTL 326 (337)
Q Consensus 303 ~~------------~~~~--~e~-~~~v~~~g~~~~-------~~l 326 (337)
+. .|.. ..+ .+..+..|.-|+ +|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~~y~ 268 (480)
T 1obb_A 223 KWIEEKSKDWKPENPFNDQLSPAAIDMYRFYGVMPIGDTVRNSSWR 268 (480)
T ss_dssp HHHHHTGGGCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGTTSCCGG
T ss_pred HHHHccCccccccccccchhhhHHHHHHHhcCCeecCCCCCCcCcc
Confidence 31 1322 122 466778899999 899
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-27 Score=234.36 Aligned_cols=186 Identities=18% Similarity=0.162 Sum_probs=147.0
Q ss_pred CCCEEEEEcCCCch--HHHHHHHHHHcCCCCCCCceEEEeccccchhhHHH---hHHHhHhhhccCCcccEEEecCcccc
Q 019713 95 KMVNIAVSGAAGMI--ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYEL 169 (337)
Q Consensus 95 ~~~KI~IIGAaG~V--G~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~---g~a~DL~d~~~~~~~~v~i~t~~~ea 169 (337)
+.+||+|||| |.+ |..++..|+....+. . .+.|+|++. ++++ .....+.+ ...+++.++|..++
T Consensus 4 ~~~KIaVIGa-Gs~g~g~~la~~l~~~~~~~---g-eV~L~Di~~--e~le~~~~~~~~l~~----~~~~I~~TtD~~eA 72 (450)
T 3fef_A 4 DQIKIAYIGG-GSQGWARSLMSDLSIDERMS---G-TVALYDLDF--EAAQKNEVIGNHSGN----GRWRYEAVSTLKKA 72 (450)
T ss_dssp CCEEEEEETT-TCSSHHHHHHHHHHHCSSCC---E-EEEEECSSH--HHHHHHHHHHTTSTT----SCEEEEEESSHHHH
T ss_pred CCCEEEEECC-ChhHhHHHHHHHHHhccccC---C-eEEEEeCCH--HHHHHHHHHHHHHhc----cCCeEEEECCHHHH
Confidence 3469999995 998 467888887655331 1 345566643 3333 22211221 33467778887899
Q ss_pred cCCCcEEEEecc------------cCCCCCCchh--hhHH--------hhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 170 FEDAEWALLIGA------------KPRGPGMERA--GLLD--------INGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 170 l~dADvVIitag------------~prk~g~~R~--dll~--------~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
++|||+||++.. .|+|+|+.|. |... +|+++++++++.|+++ +|+||+|++|||+|+
T Consensus 73 l~dADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~-~p~a~~i~~tNPvdi 151 (450)
T 3fef_A 73 LSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDY-APESWVINYTNPMSV 151 (450)
T ss_dssp HTTCSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHH
T ss_pred hcCCCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHH-CCCeEEEEecCchHH
Confidence 999999999873 5999999877 6655 9999999999999999 799999999999999
Q ss_pred HHHHHHHHCCCCCCCeEEecCchhHHHHHHHHHHHh----C---CCcccccceEEEe-ccCCCcccccccceEcCeehhh
Q 019713 228 NALICLKNAPSIPAKNFHALTRLDENRAKCQLALKA----G---VFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKE 299 (337)
Q Consensus 228 ~t~i~~k~s~~~p~kvIG~gT~LDs~R~~~~lA~~l----g---v~~~~V~~v~V~G-nHG~t~vp~~S~a~V~G~pl~e 299 (337)
+|++++|..| +.|+||+|+.+ .+++..+|+.+ | +++++|+. .+.| || +.||++++++|+++.+
T Consensus 152 ~t~~~~k~~p--~~rviG~C~~~--~~~~~~~a~~l~~~lg~~~~~~~~v~~-~~~GlNH----~~w~~~~~~~G~d~~p 222 (450)
T 3fef_A 152 CTRVLYKVFP--GIKAIGCCHEV--FGTQKLLAEMVTERLGIEVPRREDIRV-NVLGINH----FTWITKASYRHIDLLP 222 (450)
T ss_dssp HHHHHHHHCT--TCEEEECCSHH--HHHHHHHHHHHHHHHCCCCSCGGGEEE-EEEEETT----EEEEEEEEETTEEHHH
T ss_pred HHHHHHHHCC--CCCEEEeCCcH--HHHHHHHHHHHHhhcCCCCCChhHeEE-EEeeecC----eEeEEEEEECCEEChH
Confidence 9999998743 23899999985 89999999999 5 77999994 8899 99 9999999999999997
Q ss_pred hh
Q 019713 300 II 301 (337)
Q Consensus 300 ~i 301 (337)
.+
T Consensus 223 ~l 224 (450)
T 3fef_A 223 IF 224 (450)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=233.75 Aligned_cols=218 Identities=13% Similarity=0.076 Sum_probs=163.0
Q ss_pred CEEEEEcCCCchHHHH--HHHHHHcCCCC-CCCceEEEeccccchhhHHHhHHHhHhhhcc--CCcccEEEecCcccccC
Q 019713 97 VNIAVSGAAGMIANHL--LFKLAAGEVLG-PDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFE 171 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~l--a~~L~~~~l~~-e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~--~~~~~v~i~t~~~eal~ 171 (337)
|||+|||| |++|++. ...|+....++ . ...|.|+|+ +++++++.+.++++... ....+++.++|..+|++
T Consensus 1 mKI~iIGa-Gs~~~t~~l~~~~~~~~~l~~~--~~ei~L~Di--~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~ 75 (477)
T 3u95_A 1 MKISIVGA-GSVRFALQLVEDIAQTDELSRE--DTHIYLMDV--HERRLNASYILARKYVEELNSPVKVVKTESLDEAIE 75 (477)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTCTTTCST--TCEEEEECS--CHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHT
T ss_pred CEEEEECC-CchhhHHHHHHHHHhhHhcCCC--CCEEEEECC--CHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhC
Confidence 69999996 9998773 34455544432 2 134566665 56788888888887652 23346777888889999
Q ss_pred CCcEEEEeccc-------------------CCCCCCchhhhHH---------------hhHHHHHHHHHHHHhhcCCCeE
Q 019713 172 DAEWALLIGAK-------------------PRGPGMERAGLLD---------------INGQIFAEQGKALNAVASRNVK 217 (337)
Q Consensus 172 dADvVIitag~-------------------prk~g~~R~dll~---------------~N~~I~~~i~~~I~~~a~p~ai 217 (337)
|||+||+++|. |+|+|++|.++.+ +|++++.+++++|+++ |||||
T Consensus 76 gAD~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~-~P~A~ 154 (477)
T 3u95_A 76 GADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKM-APKAY 154 (477)
T ss_dssp TCSEEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHH-CTTCE
T ss_pred CCCEEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhh-CCCeE
Confidence 99999999863 5688888776533 5899999999999999 79999
Q ss_pred EEEeCCCchhHHHHHHHHCCCCCCCeEEecCchhHHHHHHHHHHHhCCCcccccceEEEe-ccCCCcccccccceEcCee
Q 019713 218 VIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLP 296 (337)
Q Consensus 218 vIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~G-nHG~t~vp~~S~a~V~G~p 296 (337)
+|++|||++++|+.++|++ ++ |+||.|- +.+....+++.||+++++|+. .+.| || +.|+..++.+|++
T Consensus 155 ~in~tNP~~i~t~a~~~~~-~~--k~vGlC~---~~~~~~~~~~~Lg~~~~~v~~-~~~GlNH----~~w~~~~~~~G~D 223 (477)
T 3u95_A 155 LMQTANPVFEITQAVRRWT-GA--NIIGFCH---GVAGVYEVFERLGLDPEEVDW-QVAGVNH----GIWLNRFRYRGKD 223 (477)
T ss_dssp EEECSSCHHHHHHHHHHHH-CC--CEEEECC---GGGHHHHHHHHTTCCGGGEEE-EEEEETT----EEEEEEEEETTEE
T ss_pred EEEecChHHHHHHHHHHhC-CC--CeEEECC---CHHHHHHHHHHhCCCHHHcEE-EEeecCC----CeeeeeeeecCCc
Confidence 9999999999999999986 45 7999964 444456788889999999994 7899 99 9999999999998
Q ss_pred hhhhhhh------------cccch---HHHHHHHHhccCcc------cceeheeee
Q 019713 297 VKEIIKD------------HKWLE---EGFTETIQKVRLVD------NFTLILFVM 331 (337)
Q Consensus 297 l~e~i~~------------~~~~~---~e~~~~v~~~g~~~------~~~l~~~~~ 331 (337)
+.+.+.+ ..|+. ....+.++.-|..| +.|+.|||+
T Consensus 224 ~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~r~~g~~p~~~~~~~~~~~y~~~ 279 (477)
T 3u95_A 224 AYPLLDEWIEKELSKWEPKNPWDTQMSPAAMDMYRFYGMLPIGDTVRNGTWKYHYN 279 (477)
T ss_dssp CHHHHHHHHHHHTTTCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGGTSCCGGGTSS
T ss_pred ccHHHHHHHHhhcccccccCccccccchHHHHHHHHhCCcccccccccccchhhhh
Confidence 8765432 11211 12346677778776 445655553
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-09 Score=103.52 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=99.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhH----HH---hHhhhc---cC-----CcccE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV----AM---ELEDSL---FP-----LLREV 160 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~----a~---DL~d~~---~~-----~~~~v 160 (337)
..||+|||| |.||+.+|..++..|+ +|.| +|+ +++.++.- .- .+.+.. .. .+..+
T Consensus 6 ~~~VaViGa-G~MG~giA~~~a~~G~-----~V~l--~D~--~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i 75 (319)
T 3ado_A 6 AGDVLIVGS-GLVGRSWAMLFASGGF-----RVKL--YDI--EPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLI 75 (319)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTC-----CEEE--ECS--CHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTE
T ss_pred CCeEEEECC-cHHHHHHHHHHHhCCC-----eEEE--EEC--CHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhc
Confidence 469999995 9999999999999987 3665 344 33332211 11 111110 00 11356
Q ss_pred EEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHH-------
Q 019713 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALIC------- 232 (337)
Q Consensus 161 ~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~------- 232 (337)
+.+++..++++|||+||.+. .+|.++.+++.++|++++.|++ |++||.... ++.++
T Consensus 76 ~~~~~l~~a~~~ad~ViEav--------------~E~l~iK~~lf~~l~~~~~~~a--IlaSNTSsl~is~ia~~~~~p~ 139 (319)
T 3ado_A 76 SSCTNLAEAVEGVVHIQECV--------------PENLDLKRKIFAQLDSIVDDRV--VLSSSSSCLLPSKLFTGLAHVK 139 (319)
T ss_dssp EEECCHHHHTTTEEEEEECC--------------CSCHHHHHHHHHHHHTTCCSSS--EEEECCSSCCHHHHHTTCTTGG
T ss_pred ccccchHhHhccCcEEeecc--------------ccHHHHHHHHHHHHHHHhhhcc--eeehhhhhccchhhhhhccCCC
Confidence 66666667899999999985 4678999999999999988888 479998765 44443
Q ss_pred ----HHHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCcc
Q 019713 233 ----LKNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYD 268 (337)
Q Consensus 233 ----~k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~ 268 (337)
.+++ ++|+ +++ |..|.-++...-..+++++|..|-
T Consensus 140 r~ig~Hff-NP~~~m~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~pv 184 (319)
T 3ado_A 140 QCIVAHPV-NPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSPV 184 (319)
T ss_dssp GEEEEEEC-SSTTTCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred cEEEecCC-CCccccchHHhcCCCCCcHHHHHHHHHHHHHhCCccC
Confidence 2333 3333 455 556888887777888899987663
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5.8e-08 Score=102.53 Aligned_cols=148 Identities=11% Similarity=0.091 Sum_probs=99.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHh----HHHhHhh-------h-ccCCcccEEEe
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG----VAMELED-------S-LFPLLREVKIG 163 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g----~a~DL~d-------~-~~~~~~~v~i~ 163 (337)
..||+|||| |.||+.+|..++..|+ +|.| +|++ ++.++. ....+.. . .......++.+
T Consensus 316 i~~v~ViGa-G~MG~gIA~~~a~aG~-----~V~l--~D~~--~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 385 (742)
T 3zwc_A 316 VSSVGVLGL-GTMGRGIAISFARVGI-----SVVA--VESD--PKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFS 385 (742)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTTC-----EEEE--ECSS--HHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEE
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCC-----chhc--ccch--HhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhccc
Confidence 369999995 9999999999999887 3554 4443 222211 0000100 0 01122345554
Q ss_pred cCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHH----------
Q 019713 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALIC---------- 232 (337)
Q Consensus 164 t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~---------- 232 (337)
+++++++|||+||.+. .+|+++.+++.++|++++.|++ |++||...+ ++.++
T Consensus 386 -~~~~~l~~aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~a--IlASNTSsl~i~~ia~~~~~p~r~i 448 (742)
T 3zwc_A 386 -SSTKELSTVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGA--FLCTNTSALNVDDIASSTDRPQLVI 448 (742)
T ss_dssp -SCGGGGGSCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTC--EEEECCSSSCHHHHHTTSSCGGGEE
T ss_pred -CcHHHHhhCCEEEEec--------------cccHHHHHHHHHHHhhcCCCCc--eEEecCCcCChHHHHhhcCCccccc
Confidence 5688999999999985 4678999999999999988898 489998765 44443
Q ss_pred -HHHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCccccc
Q 019713 233 -LKNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYDKVS 271 (337)
Q Consensus 233 -~k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~~V~ 271 (337)
++++ ++++ ++| |..|.-++...-..+++++|..|--++
T Consensus 449 g~HFf-nP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV~vk 493 (742)
T 3zwc_A 449 GTHFF-SPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVG 493 (742)
T ss_dssp EEECC-SSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred ccccc-CCCCCCceEEEecCCCCCHHHHHHHHHHHHHhCCCCcccC
Confidence 2333 2332 455 566888887777788999998774443
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.2e-07 Score=90.38 Aligned_cols=145 Identities=9% Similarity=-0.006 Sum_probs=86.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHH---Hh-Hhhhc-------cCCcccEEEe
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA---ME-LEDSL-------FPLLREVKIG 163 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a---~D-L~d~~-------~~~~~~v~i~ 163 (337)
+++||+|||+ |.||..+|..|+..|+ +|.+ +|.+ +++..... ++ +.... .....+++.+
T Consensus 53 ~i~kVaVIGa-G~MG~~IA~~la~aG~-----~V~l--~D~~--~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t 122 (460)
T 3k6j_A 53 DVNSVAIIGG-GTMGKAMAICFGLAGI-----ETFL--VVRN--EQRCKQELEVMYAREKSFKRLNDKRIEKINANLKIT 122 (460)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--ECSC--HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEE
T ss_pred cCCEEEEECC-CHHHHHHHHHHHHCCC-----eEEE--EECc--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEe
Confidence 3579999995 9999999999999886 3554 4443 33221110 00 10000 0122356666
Q ss_pred cCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHHH---------
Q 019713 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALICL--------- 233 (337)
Q Consensus 164 t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~~--------- 233 (337)
++ ++++++||+||++. .++..+.+++.+.|.+++.|+++| ++|...+ ++.++.
T Consensus 123 ~d-l~al~~aDlVIeAV--------------pe~~~vk~~v~~~l~~~~~~~aIl--asnTSsl~i~~ia~~~~~p~r~i 185 (460)
T 3k6j_A 123 SD-FHKLSNCDLIVESV--------------IEDMKLKKELFANLENICKSTCIF--GTNTSSLDLNEISSVLRDPSNLV 185 (460)
T ss_dssp SC-GGGCTTCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTCEE--EECCSSSCHHHHHTTSSSGGGEE
T ss_pred CC-HHHHccCCEEEEcC--------------CCCHHHHHHHHHHHHhhCCCCCEE--EecCCChhHHHHHHhccCCcceE
Confidence 54 57899999999985 235677888888899988888864 5665432 233321
Q ss_pred --HHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCc
Q 019713 234 --KNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFY 267 (337)
Q Consensus 234 --k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~ 267 (337)
++. +.++ +++ |..|.-++......+++.+|..|
T Consensus 186 G~Hff-nPv~~m~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~ 226 (460)
T 3k6j_A 186 GIHFF-NPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLP 226 (460)
T ss_dssp EEECC-SSTTTCCEEEEECCSSCCHHHHHHHHHHHHHTTCEE
T ss_pred EEEec-chhhhCCEEEEEeCCCCCHHHHHHHHHHHHHhCCEE
Confidence 111 1111 133 33356666666667778888654
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.1e-07 Score=85.64 Aligned_cols=148 Identities=11% Similarity=0.091 Sum_probs=85.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhcc---------------CCccc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF---------------PLLRE 159 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~---------------~~~~~ 159 (337)
+++||+|||+ |.||..+|..++..|. .|.+ + |+++++++.....+.+... ....+
T Consensus 3 ~~~kV~VIGa-G~mG~~iA~~la~~G~-----~V~l--~--d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~ 72 (283)
T 4e12_A 3 GITNVTVLGT-GVLGSQIAFQTAFHGF-----AVTA--Y--DINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGG 72 (283)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--CSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-----eEEE--E--eCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcC
Confidence 4579999995 9999999999998875 2554 3 4455554433222211100 01123
Q ss_pred EEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCC--
Q 019713 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP-- 237 (337)
Q Consensus 160 v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~-- 237 (337)
+..+++..+++++||+||++.. .+.++.+++.+.+.+++.++++++..|.... ++.+......
T Consensus 73 i~~~~~~~~~~~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~-~~~la~~~~~~~ 137 (283)
T 4e12_A 73 IRYSDDLAQAVKDADLVIEAVP--------------ESLDLKRDIYTKLGELAPAKTIFATNSSTLL-PSDLVGYTGRGD 137 (283)
T ss_dssp CEEESCHHHHTTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEEEECCSSSC-HHHHHHHHSCGG
T ss_pred eEEeCCHHHHhccCCEEEEecc--------------CcHHHHHHHHHHHHhhCCCCcEEEECCCCCC-HHHHHhhcCCCc
Confidence 5565555567999999999852 2345677777788887778876543333332 2222211110
Q ss_pred --------CCCC--C---eE-EecCchhHHHHHHHHHHHhCCCc
Q 019713 238 --------SIPA--K---NF-HALTRLDENRAKCQLALKAGVFY 267 (337)
Q Consensus 238 --------~~p~--k---vI-G~gT~LDs~R~~~~lA~~lgv~~ 267 (337)
+.+. + ++ |..|.-++......+++.+|..+
T Consensus 138 ~~ig~h~~~p~~~~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~ 181 (283)
T 4e12_A 138 KFLALHFANHVWVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVP 181 (283)
T ss_dssp GEEEEEECSSTTTSCEEEEEECTTSCHHHHHHHHHHHHHTTCEE
T ss_pred ceEEEccCCCcccCceEEEEeCCCCCHHHHHHHHHHHHHcCCEE
Confidence 1111 1 22 22345556666677788888554
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.1e-06 Score=90.47 Aligned_cols=144 Identities=15% Similarity=0.093 Sum_probs=86.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhh----c----------cCCcccEE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS----L----------FPLLREVK 161 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~----~----------~~~~~~v~ 161 (337)
++||+|||+ |.||..+|..|+..|+ +|.+ + |++++.++.....+++. . .....+++
T Consensus 312 ~~kV~VIGa-G~MG~~iA~~la~aG~-----~V~l--~--D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~ 381 (725)
T 2wtb_A 312 IKKVAIIGG-GLMGSGIATALILSNY-----PVIL--K--EVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLK 381 (725)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHTTTC-----CEEE--E--CSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEE
T ss_pred CcEEEEEcC-CHhhHHHHHHHHhCCC-----EEEE--E--ECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceE
Confidence 568999995 9999999999998876 3655 3 34444443211111111 0 01223566
Q ss_pred EecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHHHHHCC---
Q 019713 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALICLKNAP--- 237 (337)
Q Consensus 162 i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~~k~s~--- 237 (337)
.++ +++++++||+||++. .++..+.+++.+.|.+++.++++ +++|.... ++.++ +...
T Consensus 382 ~~~-d~~~~~~aDlVIeaV--------------pe~~~vk~~v~~~l~~~~~~~~I--lasntStl~i~~la-~~~~~p~ 443 (725)
T 2wtb_A 382 GSL-DYESFRDVDMVIEAV--------------IENISLKQQIFADLEKYCPQHCI--LASNTSTIDLNKIG-ERTKSQD 443 (725)
T ss_dssp EES-SSGGGTTCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTCE--EEECCSSSCHHHHT-TTCSCTT
T ss_pred EeC-CHHHHCCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCcE--EEeCCCCCCHHHHH-HHhcCCC
Confidence 665 458999999999985 23466777788888888777874 46776543 23322 1111
Q ss_pred --------CCCC-----CeE-EecCchhHHHHHHHHHHHhCCCc
Q 019713 238 --------SIPA-----KNF-HALTRLDENRAKCQLALKAGVFY 267 (337)
Q Consensus 238 --------~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~ 267 (337)
+.++ .++ |..|.-++......+.+.+|..+
T Consensus 444 ~~iG~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~ 487 (725)
T 2wtb_A 444 RIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTP 487 (725)
T ss_dssp TEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEE
T ss_pred CEEEecCCCCcccCceEEEEECCCCCHHHHHHHHHHHHHhCCEE
Confidence 0111 123 23356666666677788888554
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.5e-06 Score=85.30 Aligned_cols=145 Identities=9% Similarity=0.044 Sum_probs=83.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh--------hhc-cC--C-cccEEE
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE--------DSL-FP--L-LREVKI 162 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~--------d~~-~~--~-~~~v~i 162 (337)
+++||+|||+ |.||..+|..|+..|+ .|.+ +| ++++.++.....++ ... .+ . .....+
T Consensus 36 ~~~kV~VIGa-G~MG~~iA~~la~~G~-----~V~l--~D--~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 105 (463)
T 1zcj_A 36 PVSSVGVLGL-GTMGRGIAISFARVGI-----SVVA--VE--SDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF 105 (463)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTC-----EEEE--EC--SSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCC-----eEEE--EE--CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh
Confidence 3569999995 9999999999998875 2544 34 34444332211111 100 00 0 011344
Q ss_pred ecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCC
Q 019713 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAK 242 (337)
Q Consensus 163 ~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~k 242 (337)
++ +++++++||+||++.. ++..+.+++.+.|.+++.++++| ++|....-...+.... .-|.+
T Consensus 106 ~~-~~~~~~~aDlVIeaVp--------------e~~~~k~~v~~~l~~~~~~~~ii--~snTs~~~~~~la~~~-~~~~~ 167 (463)
T 1zcj_A 106 SS-STKELSTVDLVVEAVF--------------EDMNLKKKVFAELSALCKPGAFL--CTNTSALNVDDIASST-DRPQL 167 (463)
T ss_dssp ES-CGGGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCHHHHHTTS-SCGGG
T ss_pred cC-CHHHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCCCcCHHHHHHHh-cCCcc
Confidence 44 4588999999999862 24566777777888887778764 4576654222222222 11112
Q ss_pred e-----------------E-EecCchhHHHHHHHHHHHhCCCc
Q 019713 243 N-----------------F-HALTRLDENRAKCQLALKAGVFY 267 (337)
Q Consensus 243 v-----------------I-G~gT~LDs~R~~~~lA~~lgv~~ 267 (337)
+ + |..|.-++......+.+.+|..+
T Consensus 168 ~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~ 210 (463)
T 1zcj_A 168 VIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIG 210 (463)
T ss_dssp EEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEE
T ss_pred eEEeecCCCcccceeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 2 2 22456666666667778888544
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=9.8e-07 Score=82.72 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=63.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhh----h--cc-------------
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED----S--LF------------- 154 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d----~--~~------------- 154 (337)
.+++||+|||+ |.||..+|..|+..|. .|.+ +| +++++++.....+.+ . ..
T Consensus 13 ~~~~~I~VIG~-G~mG~~iA~~la~~G~-----~V~~--~d--~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~ 82 (302)
T 1f0y_A 13 IIVKHVTVIGG-GLMGAGIAQVAAATGH-----TVVL--VD--QTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVE 82 (302)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--EC--SCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred ccCCEEEEECC-CHHHHHHHHHHHhCCC-----eEEE--EE--CCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHH
Confidence 34679999995 9999999999998775 2544 33 444444421111110 0 00
Q ss_pred CCcccEEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEE
Q 019713 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVI 219 (337)
Q Consensus 155 ~~~~~v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivI 219 (337)
....+++.+++..+++++||+||++.. .+..+.+++.+.|.++..++++|+
T Consensus 83 ~~~~~i~~~~~~~~~~~~aD~Vi~avp--------------~~~~~~~~v~~~l~~~~~~~~iv~ 133 (302)
T 1f0y_A 83 KTLSTIATSTDAASVVHSTDLVVEAIV--------------ENLKVKNELFKRLDKFAAEHTIFA 133 (302)
T ss_dssp HHHHTEEEESCHHHHTTSCSEEEECCC--------------SCHHHHHHHHHHHTTTSCTTCEEE
T ss_pred HHHhceEEecCHHHhhcCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEEE
Confidence 001246666665568999999999851 234556677777887766787544
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-06 Score=87.00 Aligned_cols=146 Identities=15% Similarity=0.102 Sum_probs=86.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhcc--------------CCcccE
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--------------PLLREV 160 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~--------------~~~~~v 160 (337)
+.+||+|||+ |.||..+|..|+..|+ .|.+ + |+++++++.....+.+... ....++
T Consensus 4 ~~~kVgVIGa-G~MG~~IA~~la~aG~-----~V~l--~--D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 73 (483)
T 3mog_A 4 NVQTVAVIGS-GTMGAGIAEVAASHGH-----QVLL--Y--DISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRL 73 (483)
T ss_dssp CCCCEEEECC-SHHHHHHHHHHHHTTC-----CEEE--E--CSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTE
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCC-----eEEE--E--ECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhce
Confidence 3569999995 9999999999999886 3655 3 4455555433222111100 011246
Q ss_pred EEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHHH------
Q 019713 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALICL------ 233 (337)
Q Consensus 161 ~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~~------ 233 (337)
+.++ +++++++||+||++. ..+..+.+++.+.|.+++.++++ +++|...+ ++.+..
T Consensus 74 ~~~~-~~~~~~~aDlVIeAV--------------pe~~~vk~~v~~~l~~~~~~~~I--lasntSti~i~~ia~~~~~p~ 136 (483)
T 3mog_A 74 IPVT-DIHALAAADLVIEAA--------------SERLEVKKALFAQLAEVCPPQTL--LTTNTSSISITAIAAEIKNPE 136 (483)
T ss_dssp EEEC-CGGGGGGCSEEEECC--------------CCCHHHHHHHHHHHHHHSCTTCE--EEECCSSSCHHHHTTTSSSGG
T ss_pred eEeC-CHHHhcCCCEEEEcC--------------CCcHHHHHHHHHHHHHhhccCcE--EEecCCCCCHHHHHHHccCcc
Confidence 6654 457899999999985 23456777888888888778875 44555433 222221
Q ss_pred -----HHCCCCCC----CeEE-ecCchhHHHHHHHHHHHhCCCc
Q 019713 234 -----KNAPSIPA----KNFH-ALTRLDENRAKCQLALKAGVFY 267 (337)
Q Consensus 234 -----k~s~~~p~----kvIG-~gT~LDs~R~~~~lA~~lgv~~ 267 (337)
++....|. .+++ ..|.-++......+++.+|..+
T Consensus 137 ~~ig~hf~~Pa~v~~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~ 180 (483)
T 3mog_A 137 RVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQP 180 (483)
T ss_dssp GEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEE
T ss_pred ceEEeeecChhhhCCeEEEecCCCCCHHHHHHHHHHHHHhCCEE
Confidence 11100111 1332 2345566666777788888654
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.3e-06 Score=84.93 Aligned_cols=116 Identities=9% Similarity=0.035 Sum_probs=68.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC---------------
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--------------- 156 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~--------------- 156 (337)
+.+++||+||| +|.||..+|..|+.. |.. .|.+ +|+ ++++..+.+..|.....+.
T Consensus 15 ~~~~mkIaVIG-lG~mG~~lA~~la~~~G~~----~V~~--~D~--~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~ 85 (478)
T 3g79_A 15 RGPIKKIGVLG-MGYVGIPAAVLFADAPCFE----KVLG--FQR--NSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVV 85 (478)
T ss_dssp HCSCCEEEEEC-CSTTHHHHHHHHHHSTTCC----EEEE--ECC--CCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHH
T ss_pred cCCCCEEEEEC-cCHHHHHHHHHHHHhCCCC----eEEE--EEC--ChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhc
Confidence 45678999999 599999999999998 641 1444 443 4441111111222211111
Q ss_pred -cccEEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 157 -LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 157 -~~~v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
..++..+++ .+++++||+||++.+.|..+..++ ..+...+....+.|.++..++.+||.-|
T Consensus 86 ~~g~l~~ttd-~ea~~~aDvViiaVptp~~~~~~~----~~dl~~v~~~~~~i~~~l~~g~iVV~~S 147 (478)
T 3g79_A 86 KAGKFECTPD-FSRISELDAVTLAIQTPFANPKDL----EPDFSALIDGIRNVGKYLKPGMLVVLES 147 (478)
T ss_dssp HTTCEEEESC-GGGGGGCSEEEECCCCCCCSSCCS----SCCCHHHHHHHHHHHHHCCTTCEEEECS
T ss_pred ccCCeEEeCc-HHHHhcCCEEEEecCCchhccCCc----cccHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 235777766 889999999999987765432211 0123344455555666555666555444
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=5.3e-06 Score=87.30 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=84.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhh----hc-cC---------CcccE
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED----SL-FP---------LLREV 160 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d----~~-~~---------~~~~v 160 (337)
+.+||+|||+ |.||..+|..|+..|+ .|.+ +| +++++++.....+++ .. .. ...++
T Consensus 313 ~i~kV~VIGa-G~MG~~iA~~la~aG~-----~V~l--~D--~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i 382 (715)
T 1wdk_A 313 DVKQAAVLGA-GIMGGGIAYQSASKGT-----PILM--KD--INEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGI 382 (715)
T ss_dssp CCSSEEEECC-HHHHHHHHHHHHHTTC-----CEEE--EC--SSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHE
T ss_pred cCCEEEEECC-ChhhHHHHHHHHhCCC-----EEEE--EE--CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCe
Confidence 3578999995 9999999999999886 2554 33 344444321000111 00 00 11246
Q ss_pred EEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHHHHHCC--
Q 019713 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALICLKNAP-- 237 (337)
Q Consensus 161 ~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~~k~s~-- 237 (337)
+.+++ ++++++||+||++. .++..+.+++.+.|.+++.++++ +++|...+ ++.++ +...
T Consensus 383 ~~~~d-~~~~~~aDlVIeaV--------------~e~~~vk~~v~~~l~~~~~~~~I--lasntStl~i~~la-~~~~~~ 444 (715)
T 1wdk_A 383 RPTLS-YGDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVREDAI--LASNTSTISISLLA-KALKRP 444 (715)
T ss_dssp EEESS-STTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTCE--EEECCSSSCHHHHG-GGCSCG
T ss_pred EEECC-HHHHCCCCEEEEcC--------------CCCHHHHHHHHHHHHhhCCCCeE--EEeCCCCCCHHHHH-HHhcCc
Confidence 66654 48999999999985 23456777788888888777875 46665432 23222 1110
Q ss_pred --------CCCC------CeE-EecCchhHHHHHHHHHHHhCCCc
Q 019713 238 --------SIPA------KNF-HALTRLDENRAKCQLALKAGVFY 267 (337)
Q Consensus 238 --------~~p~------kvI-G~gT~LDs~R~~~~lA~~lgv~~ 267 (337)
.-|. .++ |..|.-++......+.+.+|..+
T Consensus 445 ~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~ 489 (715)
T 1wdk_A 445 ENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNP 489 (715)
T ss_dssp GGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEE
T ss_pred cceEEEEccCCcccCceEEEEECCCCCHHHHHHHHHHHHHhCCEe
Confidence 0021 123 33356666666667778888544
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.2e-05 Score=77.83 Aligned_cols=106 Identities=16% Similarity=0.141 Sum_probs=70.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhh----ccCCcccEEEecCccccc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS----LFPLLREVKIGINPYELF 170 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~----~~~~~~~v~i~t~~~eal 170 (337)
+++||+|||+ |.+|.+++..|+..+. .|.+ + ++++++++....+-... ...+..++..+++..+++
T Consensus 28 ~~mkI~VIGa-G~mG~alA~~La~~G~-----~V~l--~--~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~ 97 (356)
T 3k96_A 28 FKHPIAILGA-GSWGTALALVLARKGQ-----KVRL--W--SYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASL 97 (356)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHTTTC-----CEEE--E--CSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHH
T ss_pred cCCeEEEECc-cHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHH
Confidence 3579999995 9999999999998774 3655 3 34444444332210000 011223567777767889
Q ss_pred CCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
++||+||++. | .+.++++.+.|..+..++.+||.++|..+
T Consensus 98 ~~aDvVilaV--p--------------~~~~~~vl~~i~~~l~~~~ivvs~~kGi~ 137 (356)
T 3k96_A 98 EGVTDILIVV--P--------------SFAFHEVITRMKPLIDAKTRIAWGTKGLA 137 (356)
T ss_dssp TTCCEEEECC--C--------------HHHHHHHHHHHGGGCCTTCEEEECCCSCB
T ss_pred hcCCEEEECC--C--------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9999999975 1 23567777788877667888888888554
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.3e-05 Score=75.76 Aligned_cols=96 Identities=18% Similarity=0.247 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.+||+|||+ |.||+.+|..|+ .|+ +|.+ + |+++++++.....+.+ ..+..++.+++ .+++++||+
T Consensus 12 ~~~V~vIG~-G~MG~~iA~~la-aG~-----~V~v--~--d~~~~~~~~~~~~l~~---~~~~~i~~~~~-~~~~~~aDl 76 (293)
T 1zej_A 12 HMKVFVIGA-GLMGRGIAIAIA-SKH-----EVVL--Q--DVSEKALEAAREQIPE---ELLSKIEFTTT-LEKVKDCDI 76 (293)
T ss_dssp CCEEEEECC-SHHHHHHHHHHH-TTS-----EEEE--E--CSCHHHHHHHHHHSCG---GGGGGEEEESS-CTTGGGCSE
T ss_pred CCeEEEEee-CHHHHHHHHHHH-cCC-----EEEE--E--ECCHHHHHHHHHHHHH---HHhCCeEEeCC-HHHHcCCCE
Confidence 479999995 999999999999 876 3554 3 4455555532221211 12235666554 456999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
||.+. .++..+.+.+...+... |++++ ++|.
T Consensus 77 Vieav--------------pe~~~vk~~l~~~l~~~--~~~Il--asnt 107 (293)
T 1zej_A 77 VMEAV--------------FEDLNTKVEVLREVERL--TNAPL--CSNT 107 (293)
T ss_dssp EEECC--------------CSCHHHHHHHHHHHHTT--CCSCE--EECC
T ss_pred EEEcC--------------cCCHHHHHHHHHHHhcC--CCCEE--EEEC
Confidence 99975 23456667777778775 88754 4554
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.08 E-value=1e-05 Score=81.28 Aligned_cols=123 Identities=11% Similarity=0.114 Sum_probs=72.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHH--------hHhhhcc-CCcccEEEecCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM--------ELEDSLF-PLLREVKIGINP 166 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~--------DL~d~~~-~~~~~v~i~t~~ 166 (337)
+|||+||| +|.||..+|..|+..+.- ..|.+ + |+++++++.... ++.+... .....++.+++.
T Consensus 9 ~mkI~VIG-~G~vG~~~A~~La~~g~g---~~V~~--~--D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~ 80 (481)
T 2o3j_A 9 VSKVVCVG-AGYVGGPTCAMIAHKCPH---ITVTV--V--DMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDI 80 (481)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHHCTT---SEEEE--E--CSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCH
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCC---CEEEE--E--ECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCH
Confidence 57999999 599999999999987320 02443 3 445555554321 1111000 001246666665
Q ss_pred ccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEe-CCCchh
Q 019713 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV-GNPCNT 227 (337)
Q Consensus 167 ~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvv-tNPvd~ 227 (337)
.+++++||+||++.+.|.+.+.+|.+ -..+...+.+..+.|.++..++.+||.. |+|..+
T Consensus 81 ~~~~~~aDvvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt 141 (481)
T 2o3j_A 81 PKAIAEADLIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKA 141 (481)
T ss_dssp HHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTH
T ss_pred HHHhhcCCEEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCH
Confidence 68899999999998777544332222 0122344556666777765667655543 677655
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.3e-05 Score=71.74 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=61.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+|+||+||| +|.+|..++..|+..+. .+.+ .+ +++.++++..+.++. .. ...++.++++++|
T Consensus 22 ~mmkI~IIG-~G~mG~~la~~l~~~g~-----~V~~-v~--~r~~~~~~~l~~~~g-------~~--~~~~~~~~~~~aD 83 (220)
T 4huj_A 22 SMTTYAIIG-AGAIGSALAERFTAAQI-----PAII-AN--SRGPASLSSVTDRFG-------AS--VKAVELKDALQAD 83 (220)
T ss_dssp GSCCEEEEE-CHHHHHHHHHHHHHTTC-----CEEE-EC--TTCGGGGHHHHHHHT-------TT--EEECCHHHHTTSS
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHhCCC-----EEEE-EE--CCCHHHHHHHHHHhC-------CC--cccChHHHHhcCC
Confidence 467999999 59999999999998775 2443 13 455666655433221 01 2235667799999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
+||++.. + ..+.++.+.+.. .++.+||-++||..
T Consensus 84 vVilavp----~------------~~~~~v~~~l~~--~~~~ivi~~~~g~~ 117 (220)
T 4huj_A 84 VVILAVP----Y------------DSIADIVTQVSD--WGGQIVVDASNAID 117 (220)
T ss_dssp EEEEESC----G------------GGHHHHHTTCSC--CTTCEEEECCCCBC
T ss_pred EEEEeCC----h------------HHHHHHHHHhhc--cCCCEEEEcCCCCC
Confidence 9999851 1 223444444444 24668888899874
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.4e-05 Score=79.57 Aligned_cols=110 Identities=13% Similarity=0.189 Sum_probs=68.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccC-----C-----cccEEEecCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-----L-----LREVKIGINP 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~-----~-----~~~v~i~t~~ 166 (337)
|||+||| +|.||..+|..|+..|. .|.+ + |+++++++...........+ + ..+++.+++.
T Consensus 3 mkI~VIG-~G~vG~~lA~~La~~G~-----~V~~--~--D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~ 72 (450)
T 3gg2_A 3 LDIAVVG-IGYVGLVSATCFAELGA-----NVRC--I--DTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEI 72 (450)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCH
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcCC-----EEEE--E--ECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCH
Confidence 6999999 59999999999998775 2543 3 44555554432210000000 0 1246777766
Q ss_pred ccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 167 ~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.+++++||+||++.+.|.++.. ..+...+++.++.|.++..++.+||..|
T Consensus 73 ~ea~~~aDvViiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~g~iVV~~S 122 (450)
T 3gg2_A 73 EQAVPEADIIFIAVGTPAGEDG------SADMSYVLDAARSIGRAMSRYILIVTKS 122 (450)
T ss_dssp HHHGGGCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred HHHHhcCCEEEEEcCCCcccCC------CcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence 6789999999999876644322 1233456666667776656676666555
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.9e-05 Score=73.64 Aligned_cols=99 Identities=19% Similarity=0.203 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
++||+|||+ |.||.+++..|+..++-. ..|.+ .|++.++++....+ + .+...++..++++++|+
T Consensus 3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~--~~V~v----~dr~~~~~~~l~~~-------~--gi~~~~~~~~~~~~aDv 66 (280)
T 3tri_A 3 TSNITFIGG-GNMARNIVVGLIANGYDP--NRICV----TNRSLDKLDFFKEK-------C--GVHTTQDNRQGALNADV 66 (280)
T ss_dssp CSCEEEESC-SHHHHHHHHHHHHTTCCG--GGEEE----ECSSSHHHHHHHHT-------T--CCEEESCHHHHHSSCSE
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHCCCCC--CeEEE----EeCCHHHHHHHHHH-------c--CCEEeCChHHHHhcCCe
Confidence 479999995 999999999999887421 13554 24555565543221 1 24455667788999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhh-cCCCeEEEEeCCCch
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV-ASRNVKVIVVGNPCN 226 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~-a~p~aivIvvtNPvd 226 (337)
||++. +| +.++++.+.|..+ ..++.+||.+++.+.
T Consensus 67 Vilav----~p------------~~~~~vl~~l~~~~l~~~~iiiS~~agi~ 102 (280)
T 3tri_A 67 VVLAV----KP------------HQIKMVCEELKDILSETKILVISLAVGVT 102 (280)
T ss_dssp EEECS----CG------------GGHHHHHHHHHHHHHTTTCEEEECCTTCC
T ss_pred EEEEe----CH------------HHHHHHHHHHHhhccCCCeEEEEecCCCC
Confidence 99986 12 2234455555554 456767776666654
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1e-05 Score=79.26 Aligned_cols=121 Identities=15% Similarity=0.166 Sum_probs=71.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhH--------hhhccCCcccEEEecCccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL--------EDSLFPLLREVKIGINPYE 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL--------~d~~~~~~~~v~i~t~~~e 168 (337)
|||+|||+ |.||..++..|+. +. .|.+ + |+++++++...... .+.......++..+++..+
T Consensus 1 MkI~VIG~-G~vG~~~A~~La~-G~-----~V~~--~--d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~ 69 (402)
T 1dlj_A 1 MKIAVAGS-GYVGLSLGVLLSL-QN-----EVTI--V--DILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKA 69 (402)
T ss_dssp CEEEEECC-SHHHHHHHHHHTT-TS-----EEEE--E--CSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHH
T ss_pred CEEEEECC-CHHHHHHHHHHhC-CC-----EEEE--E--ECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHH
Confidence 58999995 9999999999987 53 2543 3 44555554332111 0000000113556655557
Q ss_pred ccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEE-eCCCchhHHHHHHH
Q 019713 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIV-VGNPCNTNALICLK 234 (337)
Q Consensus 169 al~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIv-vtNPvd~~t~i~~k 234 (337)
++++||+||++...|..++..+.|+ ..+.+..+.|.+ ..++.+||. .|||.+....+...
T Consensus 70 ~~~~aDvviiavpt~~~~~~~~~dl-----~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~ 130 (402)
T 1dlj_A 70 AYKEAELVIIATPTNYNSRINYFDT-----QHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQK 130 (402)
T ss_dssp HHHHCSEEEECCCCCEETTTTEECC-----HHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHH
T ss_pred HhcCCCEEEEecCCCcccCCCCccH-----HHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHH
Confidence 8899999999876553222233332 234444455555 357776665 79999886655433
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=98.00 E-value=1.6e-05 Score=79.41 Aligned_cols=127 Identities=10% Similarity=0.041 Sum_probs=71.4
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHH--------hHhhhcc-CCcccEEE
Q 019713 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM--------ELEDSLF-PLLREVKI 162 (337)
Q Consensus 92 ~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~--------DL~d~~~-~~~~~v~i 162 (337)
+|+++|||+||| +|.||..+|..|+..+. +. .|.+ + |+++++++.... ++.+... .....+..
T Consensus 1 ~M~~~mkI~VIG-~G~mG~~lA~~La~~g~-G~--~V~~--~--d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~ 72 (467)
T 2q3e_A 1 SMFEIKKICCIG-AGYVGGPTCSVIAHMCP-EI--RVTV--V--DVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFF 72 (467)
T ss_dssp -CCCCCEEEEEC-CSTTHHHHHHHHHHHCT-TS--EEEE--E--CSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE
T ss_pred CCCCccEEEEEC-CCHHHHHHHHHHHhcCC-CC--EEEE--E--ECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEE
Confidence 356678999999 59999999999998731 11 2443 3 445555543211 0000000 00124666
Q ss_pred ecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEe-CCCchh
Q 019713 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV-GNPCNT 227 (337)
Q Consensus 163 ~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvv-tNPvd~ 227 (337)
+++..+++++||+||++...|........+ -.-+...+.+..+.|.++..++.+||.. |+|...
T Consensus 73 t~~~~e~~~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~ 137 (467)
T 2q3e_A 73 STNIDDAIKEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRA 137 (467)
T ss_dssp ESCHHHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTH
T ss_pred ECCHHHHHhcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchH
Confidence 666567899999999987655422110000 0122344566666676665666666554 567654
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=3.9e-05 Score=75.79 Aligned_cols=115 Identities=12% Similarity=0.034 Sum_probs=67.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHh--------HhhhccC-C-cccEEEecCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--------LEDSLFP-L-LREVKIGINP 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~D--------L~d~~~~-~-~~~v~i~t~~ 166 (337)
|||+||| +|.||..+|..|+..|. .|.+ + |+++++++..... +++.... . ..++..+++.
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~-----~V~~--~--d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~ 70 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGH-----EVIG--V--DVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDF 70 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE--E--ECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCH
Confidence 5899999 59999999999998774 2443 3 4455555543221 1100000 0 1236666665
Q ss_pred ccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCC---CeEEEEe-CCCchh
Q 019713 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR---NVKVIVV-GNPCNT 227 (337)
Q Consensus 167 ~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p---~aivIvv-tNPvd~ 227 (337)
.+++++||+||++.+.|..... ..| ...+++..+.|.++..+ +.+|+.. |+|...
T Consensus 71 ~~~~~~aDvviiaVptp~~~~~-~~d-----l~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~ 129 (436)
T 1mv8_A 71 KKAVLDSDVSFICVGTPSKKNG-DLD-----LGYIETVCREIGFAIREKSERHTVVVRSTVLPGT 129 (436)
T ss_dssp HHHHHTCSEEEECCCCCBCTTS-SBC-----CHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred HHHhccCCEEEEEcCCCcccCC-Ccc-----hHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCc
Confidence 5689999999999866543211 122 23334444555554445 6666554 778665
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=2.3e-05 Score=77.90 Aligned_cols=118 Identities=11% Similarity=0.185 Sum_probs=65.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHH--------hHhhhccCCcccEEEecC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM--------ELEDSLFPLLREVKIGIN 165 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~--------DL~d~~~~~~~~v~i~t~ 165 (337)
.++|||+||| +|.||..+|..|+. +. .|.+ + |+++++++.... ++++.......+++.+++
T Consensus 34 ~~~mkIaVIG-lG~mG~~lA~~La~-G~-----~V~~--~--D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd 102 (432)
T 3pid_A 34 SEFMKITISG-TGYVGLSNGVLIAQ-NH-----EVVA--L--DIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTD 102 (432)
T ss_dssp -CCCEEEEEC-CSHHHHHHHHHHHT-TS-----EEEE--E--CSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESC
T ss_pred cCCCEEEEEC-cCHHHHHHHHHHHc-CC-----eEEE--E--ecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcC
Confidence 3457999999 59999999999887 53 2544 3 445555543322 111110000125677777
Q ss_pred cccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-CCchhH
Q 019713 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTN 228 (337)
Q Consensus 166 ~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt-NPvd~~ 228 (337)
..+++++||+||++...|..+.....| ...+.+.++.|.+ ..|+.+||.-| -|..+.
T Consensus 103 ~~ea~~~aDvViiaVPt~~~~~~~~~D-----l~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt 160 (432)
T 3pid_A 103 KHDAYRNADYVIIATPTDYDPKTNYFN-----TSTVEAVIRDVTE-INPNAVMIIKSTIPVGFT 160 (432)
T ss_dssp HHHHHTTCSEEEECCCCEEETTTTEEE-----CHHHHHHHHHHHH-HCTTSEEEECSCCCTTHH
T ss_pred HHHHHhCCCEEEEeCCCcccccccccc-----HHHHHHHHHHHHh-cCCCcEEEEeCCCChHHH
Confidence 678999999999986443211111112 2233444444444 35676655543 455443
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=5e-05 Score=76.24 Aligned_cols=112 Identities=8% Similarity=-0.002 Sum_probs=68.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC----------cccEEEec
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL----------LREVKIGI 164 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~----------~~~v~i~t 164 (337)
..|||+||| +|.||..+|..|+..|. .|.+ + |+++++++...........+- ..+++.++
T Consensus 7 ~~~~I~VIG-~G~vG~~lA~~la~~G~-----~V~~--~--d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~tt 76 (478)
T 2y0c_A 7 GSMNLTIIG-SGSVGLVTGACLADIGH-----DVFC--L--DVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFST 76 (478)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEEC
T ss_pred CCceEEEEC-cCHHHHHHHHHHHhCCC-----EEEE--E--ECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEEC
Confidence 458999999 59999999999998775 2544 3 344455543321100000000 12467776
Q ss_pred CcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 165 ~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+..+++++||+||++...|.+... . -+...+++.++.|.++..++.+|+.-|
T Consensus 77 d~~~a~~~aDvviiaVptp~~~~~-~-----~dl~~v~~v~~~i~~~l~~~~iVV~~S 128 (478)
T 2y0c_A 77 DIEAAVAHGDVQFIAVGTPPDEDG-S-----ADLQYVLAAARNIGRYMTGFKVIVDKS 128 (478)
T ss_dssp CHHHHHHHCSEEEECCCCCBCTTS-S-----BCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred CHHHHhhcCCEEEEEeCCCcccCC-C-----ccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 665789999999999876643221 1 223455666666777656777665554
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00013 Score=66.55 Aligned_cols=95 Identities=16% Similarity=0.144 Sum_probs=61.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
++||+|||+ |.+|..++..|...+. +.+.+ + |++.++++.....+ .+...++..+.++++|+
T Consensus 10 ~m~i~iiG~-G~mG~~~a~~l~~~g~----~~v~~--~--~~~~~~~~~~~~~~---------g~~~~~~~~~~~~~~Dv 71 (266)
T 3d1l_A 10 DTPIVLIGA-GNLATNLAKALYRKGF----RIVQV--Y--SRTEESARELAQKV---------EAEYTTDLAEVNPYAKL 71 (266)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHHTC----CEEEE--E--CSSHHHHHHHHHHT---------TCEEESCGGGSCSCCSE
T ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCC----eEEEE--E--eCCHHHHHHHHHHc---------CCceeCCHHHHhcCCCE
Confidence 469999995 9999999999988764 11333 3 45555554332111 13344555677899999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
||++... ...+++.+.+.+...++.+|+..+|-
T Consensus 72 vi~av~~----------------~~~~~v~~~l~~~~~~~~ivv~~s~~ 104 (266)
T 3d1l_A 72 YIVSLKD----------------SAFAELLQGIVEGKREEALMVHTAGS 104 (266)
T ss_dssp EEECCCH----------------HHHHHHHHHHHTTCCTTCEEEECCTT
T ss_pred EEEecCH----------------HHHHHHHHHHHhhcCCCcEEEECCCC
Confidence 9997521 11355666666654578888888763
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=97.81 E-value=2.8e-05 Score=70.62 Aligned_cols=100 Identities=11% Similarity=0.200 Sum_probs=62.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
++||+||| +|.||..++..|...+.... ..|.+ + |+++++++..+.++ .+....+..++++++|+
T Consensus 2 ~~~i~iIG-~G~mG~~~a~~l~~~g~~~~-~~V~~--~--~r~~~~~~~~~~~~---------g~~~~~~~~e~~~~aDv 66 (247)
T 3gt0_A 2 DKQIGFIG-CGNMGMAMIGGMINKNIVSS-NQIIC--S--DLNTANLKNASEKY---------GLTTTTDNNEVAKNADI 66 (247)
T ss_dssp CCCEEEEC-CSHHHHHHHHHHHHTTSSCG-GGEEE--E--CSCHHHHHHHHHHH---------CCEECSCHHHHHHHCSE
T ss_pred CCeEEEEC-ccHHHHHHHHHHHhCCCCCC-CeEEE--E--eCCHHHHHHHHHHh---------CCEEeCChHHHHHhCCE
Confidence 36999999 59999999999998886432 13544 2 55656655432211 23344566788899999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
||++. .| +.++++.+.|..+..++..||..++.+.
T Consensus 67 Vilav-~~---------------~~~~~v~~~l~~~l~~~~~vvs~~~gi~ 101 (247)
T 3gt0_A 67 LILSI-KP---------------DLYASIINEIKEIIKNDAIIVTIAAGKS 101 (247)
T ss_dssp EEECS-CT---------------TTHHHHC---CCSSCTTCEEEECSCCSC
T ss_pred EEEEe-CH---------------HHHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence 99986 22 1244555666665456766665666554
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.77 E-value=7.3e-05 Score=72.07 Aligned_cols=109 Identities=13% Similarity=0.146 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCC--CCceEEEeccccchhh-----HHHhHHHhHhhhc----cCCcccEEEec
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGP--DQPIALKLLGSERSLQ-----ALEGVAMELEDSL----FPLLREVKIGI 164 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e--~~~v~L~L~d~d~~~~-----~l~g~a~DL~d~~----~~~~~~v~i~t 164 (337)
++||+|||+ |.||..++..|+..+.... ...|.+ ++ ++++ +++.....-.... ..+...+..++
T Consensus 21 ~~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~~V~~--~~--r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 95 (375)
T 1yj8_A 21 PLKISILGS-GNWASAISKVVGTNAKNNYLFENEVRM--WI--RDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHS 95 (375)
T ss_dssp CBCEEEECC-SHHHHHHHHHHHHHHHHCTTBCSCEEE--EC--CSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEES
T ss_pred CCEEEEECc-CHHHHHHHHHHHHcCCccCCCCCeEEE--EE--CChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEEC
Confidence 468999995 9999999999987662100 013554 33 3333 3332211100000 01123466666
Q ss_pred CcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHh----hcCCCeEEEEeCCCc
Q 019713 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA----VASRNVKVIVVGNPC 225 (337)
Q Consensus 165 ~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~----~a~p~aivIvvtNPv 225 (337)
+..+++++||+||++.. .+.++++.+.|.. +..++.+||.++|..
T Consensus 96 ~~~ea~~~aDvVilav~----------------~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi 144 (375)
T 1yj8_A 96 DLASVINDADLLIFIVP----------------CQYLESVLASIKESESIKIASHAKAISLTKGF 144 (375)
T ss_dssp STHHHHTTCSEEEECCC----------------HHHHHHHHHHHTC---CCCCTTCEEEECCCSC
T ss_pred CHHHHHcCCCEEEEcCC----------------HHHHHHHHHHHhhhhhccCCCCCEEEEeCCcc
Confidence 66677899999999851 1346667777776 556788888888854
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.76 E-value=4.3e-05 Score=71.94 Aligned_cols=69 Identities=12% Similarity=0.319 Sum_probs=47.6
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC
Q 019713 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (337)
Q Consensus 92 ~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~ 171 (337)
...+|+||+||| +|.||..++..|+..|. .|.+ + |++.++++... +. .+...++..++++
T Consensus 17 ~~~~m~~I~iIG-~G~mG~~~A~~l~~~G~-----~V~~--~--dr~~~~~~~l~----~~------g~~~~~~~~~~~~ 76 (310)
T 3doj_A 17 RGSHMMEVGFLG-LGIMGKAMSMNLLKNGF-----KVTV--W--NRTLSKCDELV----EH------GASVCESPAEVIK 76 (310)
T ss_dssp -CCCSCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--E--CSSGGGGHHHH----HT------TCEECSSHHHHHH
T ss_pred ccccCCEEEEEC-ccHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHHHH----HC------CCeEcCCHHHHHH
Confidence 345678999999 59999999999998875 2544 3 44555554322 11 2344456677889
Q ss_pred CCcEEEEec
Q 019713 172 DAEWALLIG 180 (337)
Q Consensus 172 dADvVIita 180 (337)
+||+||++.
T Consensus 77 ~aDvvi~~v 85 (310)
T 3doj_A 77 KCKYTIAML 85 (310)
T ss_dssp HCSEEEECC
T ss_pred hCCEEEEEc
Confidence 999999875
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.73 E-value=3e-05 Score=68.25 Aligned_cols=104 Identities=14% Similarity=0.211 Sum_probs=63.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-------C
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-------N 165 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-------~ 165 (337)
|++|+||.|+||+|.+|++++..|+..+. .|.+ + +++.+++... . ..+.+.. +
T Consensus 1 M~~m~~ilItGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~----~-------~~~~~~~~Dl~d~~~ 60 (227)
T 3dhn_A 1 MEKVKKIVLIGASGFVGSALLNEALNRGF-----EVTA--V--VRHPEKIKIE----N-------EHLKVKKADVSSLDE 60 (227)
T ss_dssp --CCCEEEEETCCHHHHHHHHHHHHTTTC-----EEEE--E--CSCGGGCCCC----C-------TTEEEECCCTTCHHH
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHCCC-----EEEE--E--EcCcccchhc----c-------CceEEEEecCCCHHH
Confidence 34578999999999999999999998763 2433 2 3333332210 0 1222211 1
Q ss_pred cccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 166 ~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
..++++++|+||.++|... +..++...|......+.+.+.+. ... .+|.+|
T Consensus 61 ~~~~~~~~d~vi~~a~~~~----~~~~~~~~n~~~~~~l~~~~~~~-~~~-~~v~~S 111 (227)
T 3dhn_A 61 VCEVCKGADAVISAFNPGW----NNPDIYDETIKVYLTIIDGVKKA-GVN-RFLMVG 111 (227)
T ss_dssp HHHHHTTCSEEEECCCC----------CCSHHHHHHHHHHHHHHHT-TCS-EEEEEC
T ss_pred HHHHhcCCCEEEEeCcCCC----CChhHHHHHHHHHHHHHHHHHHh-CCC-EEEEeC
Confidence 2356889999999886432 12235667888888888888875 333 566666
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00017 Score=68.22 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=47.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
.+++||+||| +|.||..++..|+..|. .|.+ + |+++++++.. .+. .+...++..+++++|
T Consensus 29 ~~~~~I~iIG-~G~mG~~~a~~l~~~G~-----~V~~--~--dr~~~~~~~l----~~~------g~~~~~~~~e~~~~a 88 (320)
T 4dll_A 29 PYARKITFLG-TGSMGLPMARRLCEAGY-----ALQV--W--NRTPARAASL----AAL------GATIHEQARAAARDA 88 (320)
T ss_dssp CCCSEEEEEC-CTTTHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHH----HTT------TCEEESSHHHHHTTC
T ss_pred cCCCEEEEEC-ccHHHHHHHHHHHhCCC-----eEEE--E--cCCHHHHHHH----HHC------CCEeeCCHHHHHhcC
Confidence 3467999999 59999999999998775 2544 3 4555555432 211 234556667889999
Q ss_pred cEEEEec
Q 019713 174 EWALLIG 180 (337)
Q Consensus 174 DvVIita 180 (337)
|+||++.
T Consensus 89 DvVi~~v 95 (320)
T 4dll_A 89 DIVVSML 95 (320)
T ss_dssp SEEEECC
T ss_pred CEEEEEC
Confidence 9999875
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0001 Score=64.15 Aligned_cols=100 Identities=12% Similarity=0.088 Sum_probs=62.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE---ecCcccccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI---GINPYELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i---~t~~~eal~dA 173 (337)
|||.|+||+|.+|++++..|+..+. .|.+ + +++.++++.. .. . ..+.. +....+++.++
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~R~~~~~~~~----~~---~--~~~~~~D~~d~~~~~~~~~ 62 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGH-----EVTA--I--VRNAGKITQT----HK---D--INILQKDIFDLTLSDLSDQ 62 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCSHHHHHH----CS---S--SEEEECCGGGCCHHHHTTC
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCC-----EEEE--E--EcCchhhhhc----cC---C--CeEEeccccChhhhhhcCC
Confidence 5899999999999999999998774 2443 2 3444443321 10 0 01111 11111678999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|+||.++|.+... ...|....+.+.+.+++. ....+|+++-
T Consensus 63 d~vi~~ag~~~~~-------~~~~~~~~~~l~~a~~~~--~~~~~v~~SS 103 (221)
T 3ew7_A 63 NVVVDAYGISPDE-------AEKHVTSLDHLISVLNGT--VSPRLLVVGG 103 (221)
T ss_dssp SEEEECCCSSTTT-------TTSHHHHHHHHHHHHCSC--CSSEEEEECC
T ss_pred CEEEECCcCCccc-------cchHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 9999998875321 234677778888887764 2346677664
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00037 Score=64.32 Aligned_cols=106 Identities=17% Similarity=0.203 Sum_probs=61.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHh-HhhhccC--CcccEEEecC--ccccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-LEDSLFP--LLREVKIGIN--PYELF 170 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~D-L~d~~~~--~~~~v~i~t~--~~eal 170 (337)
||||+|||+ |.||..++..|+..+. .|.+ + ++++++++....+ +.....+ ...++..++. ..+++
T Consensus 3 ~m~i~iiG~-G~~G~~~a~~l~~~g~-----~V~~--~--~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (316)
T 2ew2_A 3 AMKIAIAGA-GAMGSRLGIMLHQGGN-----DVTL--I--DQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQN 72 (316)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTS
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCC-----cEEE--E--ECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccC
Confidence 479999995 9999999999998764 2544 3 4444554432211 0000000 0011222221 11234
Q ss_pred CCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
+++|+||++... ....++.+.|..+..++.+|+.++|..+.
T Consensus 73 ~~~d~vi~~v~~----------------~~~~~v~~~l~~~l~~~~~iv~~~~g~~~ 113 (316)
T 2ew2_A 73 EQVDLIIALTKA----------------QQLDAMFKAIQPMITEKTYVLCLLNGLGH 113 (316)
T ss_dssp CCCSEEEECSCH----------------HHHHHHHHHHGGGCCTTCEEEECCSSSCT
T ss_pred CCCCEEEEEecc----------------ccHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence 499999998521 22456666777765678888888898764
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00012 Score=66.50 Aligned_cols=100 Identities=16% Similarity=0.111 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhH--HHhH--------HHhHhhhccCCcccEEEec
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA--LEGV--------AMELEDSLFPLLREVKIGI 164 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~--l~g~--------a~DL~d~~~~~~~~v~i~t 164 (337)
..+||+||| +|.||.+++..|+..+. .|.+ + ++++++ .+.. ..++.... + .+. .+
T Consensus 18 ~~~kIgiIG-~G~mG~alA~~L~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~-~~ 82 (245)
T 3dtt_A 18 QGMKIAVLG-TGTVGRTMAGALADLGH-----EVTI--G--TRDPKATLARAEPDAMGAPPFSQWLPEH-P---HVH-LA 82 (245)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHTCC-------CCHHHHGGGS-T---TCE-EE
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCC-----EEEE--E--eCChhhhhhhhhhhhhcchhhhHHHhhc-C---cee-cc
Confidence 357999999 59999999999998774 2544 3 344443 1111 11111111 1 122 23
Q ss_pred CcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 165 ~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
+..+++++||+||++...+ .-.+++.+++ .... ++.+||.++||.
T Consensus 83 ~~~e~~~~aDvVilavp~~------------~~~~~~~~i~---~~~l-~g~ivi~~s~~~ 127 (245)
T 3dtt_A 83 AFADVAAGAELVVNATEGA------------SSIAALTAAG---AENL-AGKILVDIANPL 127 (245)
T ss_dssp EHHHHHHHCSEEEECSCGG------------GHHHHHHHHC---HHHH-TTSEEEECCCCE
T ss_pred CHHHHHhcCCEEEEccCcH------------HHHHHHHHhh---hhhc-CCCEEEECCCCC
Confidence 4567889999999985211 1123333331 2332 677899999986
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00015 Score=68.56 Aligned_cols=107 Identities=16% Similarity=0.136 Sum_probs=65.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHh---HhhhccCCcccEEEecCcccccC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME---LEDSLFPLLREVKIGINPYELFE 171 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~D---L~d~~~~~~~~v~i~t~~~eal~ 171 (337)
.++||+|||| |.+|..++..|+..+. .|.+. . +.+.++....+ +......+..++..++ +.++++
T Consensus 18 ~~~kI~IiGa-Ga~G~~~a~~L~~~G~-----~V~l~-~----~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~-~~~~~~ 85 (318)
T 3hwr_A 18 QGMKVAIMGA-GAVGCYYGGMLARAGH-----EVILI-A----RPQHVQAIEATGLRLETQSFDEQVKVSASS-DPSAVQ 85 (318)
T ss_dssp --CEEEEESC-SHHHHHHHHHHHHTTC-----EEEEE-C----CHHHHHHHHHHCEEEECSSCEEEECCEEES-CGGGGT
T ss_pred cCCcEEEECc-CHHHHHHHHHHHHCCC-----eEEEE-E----cHhHHHHHHhCCeEEEcCCCcEEEeeeeeC-CHHHcC
Confidence 4679999995 9999999999998774 36553 2 22333322110 0000001112334444 456689
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHH
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t 229 (337)
++|+||++... .-++++.+.|..+..++.+|+.++|..+...
T Consensus 86 ~~D~vilavk~----------------~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~ 127 (318)
T 3hwr_A 86 GADLVLFCVKS----------------TDTQSAALAMKPALAKSALVLSLQNGVENAD 127 (318)
T ss_dssp TCSEEEECCCG----------------GGHHHHHHHHTTTSCTTCEEEEECSSSSHHH
T ss_pred CCCEEEEEccc----------------ccHHHHHHHHHHhcCCCCEEEEeCCCCCcHH
Confidence 99999998521 1135566677776678888999999987754
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00013 Score=64.03 Aligned_cols=101 Identities=18% Similarity=0.164 Sum_probs=59.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+||||+|.+|..++..|+..+. .|.+ + +++.++++....++.... . ...+.. ++..++++++|+|
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~-----~V~~--~--~r~~~~~~~~~~~~~~~~-~-~~~~~~-~~~~~~~~~~D~V 68 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGH-----EIVV--G--SRREEKAEAKAAEYRRIA-G-DASITG-MKNEDAAEACDIA 68 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-----EEEE--E--ESSHHHHHHHHHHHHHHH-S-SCCEEE-EEHHHHHHHCSEE
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHhcccc-c-cCCCCh-hhHHHHHhcCCEE
Confidence 5899999669999999999987663 2444 2 444455443322221100 0 012332 3345678999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
|++... ...+++.+.+.+.. ++.+++.++|+.+
T Consensus 69 i~~~~~----------------~~~~~~~~~l~~~~-~~~~vi~~~~g~~ 101 (212)
T 1jay_A 69 VLTIPW----------------EHAIDTARDLKNIL-REKIVVSPLVPVS 101 (212)
T ss_dssp EECSCH----------------HHHHHHHHHTHHHH-TTSEEEECCCCEE
T ss_pred EEeCCh----------------hhHHHHHHHHHHHc-CCCEEEEcCCCcC
Confidence 998521 11233444444433 4778899999765
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=9.5e-05 Score=70.00 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=63.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhh--HHHhHHHhHhhhccCCcccEEEecCcccccC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ--ALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~--~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~ 171 (337)
.++|||+|||+ |.||..++..|...++... ..|.+ + +++.+ +++.. ... .+.+.++..++++
T Consensus 20 ~~~mkI~iIG~-G~mG~ala~~L~~~G~~~~-~~V~v--~--~r~~~~~~~~~l----~~~------G~~~~~~~~e~~~ 83 (322)
T 2izz_A 20 FQSMSVGFIGA-GQLAFALAKGFTAAGVLAA-HKIMA--S--SPDMDLATVSAL----RKM------GVKLTPHNKETVQ 83 (322)
T ss_dssp --CCCEEEESC-SHHHHHHHHHHHHTTSSCG-GGEEE--E--CSCTTSHHHHHH----HHH------TCEEESCHHHHHH
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCCCc-ceEEE--E--CCCccHHHHHHH----HHc------CCEEeCChHHHhc
Confidence 34469999995 9999999999998875321 13544 3 34433 33322 111 2344556667889
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
++|+||++.. + ..++++.+.|.....++.+||.++|....
T Consensus 84 ~aDvVilav~----~------------~~~~~vl~~l~~~l~~~~ivvs~s~gi~~ 123 (322)
T 2izz_A 84 HSDVLFLAVK----P------------HIIPFILDEIGADIEDRHIVVSCAAGVTI 123 (322)
T ss_dssp HCSEEEECSC----G------------GGHHHHHHHHGGGCCTTCEEEECCTTCCH
T ss_pred cCCEEEEEeC----H------------HHHHHHHHHHHhhcCCCCEEEEeCCCCCH
Confidence 9999999862 1 12444555666654678888888887653
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.64 E-value=7.5e-05 Score=73.25 Aligned_cols=110 Identities=13% Similarity=0.120 Sum_probs=68.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCC-----CCCCCceEEEeccccchhhHHHhHHHhHhhhc------cCCcccEE
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEV-----LGPDQPIALKLLGSERSLQALEGVAMELEDSL------FPLLREVK 161 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l-----~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~------~~~~~~v~ 161 (337)
..+|.||+|||| |.-|.++|..|+..+. ++ ..|.|.-.+.+.+.+++. ..+.-.|.. ..+..++.
T Consensus 31 ~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~--~~V~lw~r~~e~~~~~~~-e~in~~~~N~~YLpgv~Lp~~i~ 106 (391)
T 4fgw_A 31 AEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFA--PIVQMWVFEEEINGEKLT-EIINTRHQNVKYLPGITLPDNLV 106 (391)
T ss_dssp --CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEE--EEEEEECCCCBSSSCBHH-HHHTTTCCBTTTBTTCCCCSSEE
T ss_pred cCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCC--ceEEEEEcchHhhhHHHH-HHHHhcCcCcccCCCCcCCCCcE
Confidence 356789999995 9999999999987542 11 125555443332222221 112112211 12345788
Q ss_pred EecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 162 i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.++|..+++++||+||++. | .+.++++.++++.+..++..+|.++
T Consensus 107 ~t~dl~~al~~ad~ii~av--P--------------s~~~r~~l~~l~~~~~~~~~iv~~~ 151 (391)
T 4fgw_A 107 ANPDLIDSVKDVDIIVFNI--P--------------HQFLPRICSQLKGHVDSHVRAISCL 151 (391)
T ss_dssp EESCHHHHHTTCSEEEECS--C--------------GGGHHHHHHHHTTTSCTTCEEEECC
T ss_pred EeCCHHHHHhcCCEEEEEC--C--------------hhhhHHHHHHhccccCCCceeEEec
Confidence 8888889999999999974 2 2446777777777656676666665
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=7.4e-05 Score=71.55 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc----cCCcccEEEecCcccccC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYELFE 171 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~----~~~~~~v~i~t~~~eal~ 171 (337)
|+||+|||+ |.||..++..|+..+. .|.+ + +++.++++.....-.... ..+...+..+++..++++
T Consensus 15 M~kI~iIG~-G~mG~~la~~L~~~G~-----~V~~--~--~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (366)
T 1evy_A 15 LNKAVVFGS-GAFGTALAMVLSKKCR-----EVCV--W--HMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN 84 (366)
T ss_dssp EEEEEEECC-SHHHHHHHHHHTTTEE-----EEEE--E--CSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCC-----EEEE--E--ECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHc
Confidence 349999995 9999999999987653 2443 3 444455443321110000 011124566555557789
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHH----HHhhcCC-CeEEEEeCCCch
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKA----LNAVASR-NVKVIVVGNPCN 226 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~----I~~~a~p-~aivIvvtNPvd 226 (337)
++|+||++.. + ..+.++.+. |..+..+ +.+||.++|..+
T Consensus 85 ~aDvVilav~----~------------~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~ 128 (366)
T 1evy_A 85 GAEIILFVIP----T------------QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE 128 (366)
T ss_dssp TCSSEEECCC----H------------HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred CCCEEEECCC----h------------HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCC
Confidence 9999999851 1 123334444 4443345 667788887543
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00011 Score=68.09 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=44.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
.+++||+|||+ |.||..++..|...+. .|.+ + |++.++++.. .+. .+...++..+.++++
T Consensus 2 ~~~~~i~iiG~-G~~G~~~a~~l~~~g~-----~V~~--~--~~~~~~~~~~----~~~------g~~~~~~~~~~~~~~ 61 (301)
T 3cky_A 2 EKSIKIGFIGL-GAMGKPMAINLLKEGV-----TVYA--F--DLMEANVAAV----VAQ------GAQACENNQKVAAAS 61 (301)
T ss_dssp --CCEEEEECC-CTTHHHHHHHHHHTTC-----EEEE--E--CSSHHHHHHH----HTT------TCEECSSHHHHHHHC
T ss_pred CCCCEEEEECc-cHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHHH----HHC------CCeecCCHHHHHhCC
Confidence 45679999995 9999999999988664 2443 3 4555555432 211 133444555778899
Q ss_pred cEEEEec
Q 019713 174 EWALLIG 180 (337)
Q Consensus 174 DvVIita 180 (337)
|+||++.
T Consensus 62 D~vi~~v 68 (301)
T 3cky_A 62 DIIFTSL 68 (301)
T ss_dssp SEEEECC
T ss_pred CEEEEEC
Confidence 9999975
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00018 Score=71.72 Aligned_cols=112 Identities=12% Similarity=0.095 Sum_probs=68.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccC----------CcccEEEecC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP----------LLREVKIGIN 165 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~----------~~~~v~i~t~ 165 (337)
..+|+||| +|.||..+|..|+..|. .|.+ +| +++++++...........+ ...+++.+++
T Consensus 8 ~~~~~vIG-lG~vG~~~A~~La~~G~-----~V~~--~D--~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd 77 (446)
T 4a7p_A 8 SVRIAMIG-TGYVGLVSGACFSDFGH-----EVVC--VD--KDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTD 77 (446)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--EC--SCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESC
T ss_pred ceEEEEEc-CCHHHHHHHHHHHHCCC-----EEEE--Ee--CCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECC
Confidence 57999999 59999999999999875 2544 34 3444544322110000000 0134677777
Q ss_pred cccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 166 ~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
..+++++||+||++.+.|...+..+. +...+++.++.|.++..++.+||.-|
T Consensus 78 ~~ea~~~aDvvii~Vptp~~~~~~~~-----Dl~~v~~v~~~i~~~l~~g~iVV~~S 129 (446)
T 4a7p_A 78 LAEGVKDADAVFIAVGTPSRRGDGHA-----DLSYVFAAAREIAENLTKPSVIVTKS 129 (446)
T ss_dssp HHHHHTTCSEEEECCCCCBCTTTCCB-----CTHHHHHHHHHHHHSCCSCCEEEECS
T ss_pred HHHHHhcCCEEEEEcCCCCccccCCc-----cHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 67899999999999877653211122 23445556666666656676666655
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00047 Score=61.18 Aligned_cols=110 Identities=12% Similarity=0.026 Sum_probs=68.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhh-ccCCcccEEEecCcccccCCCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS-LFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~-~~~~~~~v~i~t~~~eal~dAD 174 (337)
.+||.|+||+|.+|++++..|+..|. .|.+. +++.++++.... ... . ....++. ....++++++|
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G~-----~V~~~----~R~~~~~~~~~~--~~~~~-~~~~Dl~--~~~~~~~~~~D 86 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKGH-----EPVAM----VRNEEQGPELRE--RGASD-IVVANLE--EDFSHAFASID 86 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESSGGGHHHHHH--TTCSE-EEECCTT--SCCGGGGTTCS
T ss_pred CCeEEEECCCChHHHHHHHHHHhCCC-----eEEEE----ECChHHHHHHHh--CCCce-EEEcccH--HHHHHHHcCCC
Confidence 46999999999999999999998774 24432 344444432211 001 0 0000111 23457889999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+||.++|.... .+....+..|+.-...+.+.+.+. .. ..||++|-
T Consensus 87 ~vi~~ag~~~~--~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~iv~~SS 131 (236)
T 3e8x_A 87 AVVFAAGSGPH--TGADKTILIDLWGAIKTIQEAEKR-GI-KRFIMVSS 131 (236)
T ss_dssp EEEECCCCCTT--SCHHHHHHTTTHHHHHHHHHHHHH-TC-CEEEEECC
T ss_pred EEEECCCCCCC--CCccccchhhHHHHHHHHHHHHHc-CC-CEEEEEec
Confidence 99999875432 234455677877777888888775 33 36666664
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00048 Score=63.25 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=58.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC-CCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-DAE 174 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~-dAD 174 (337)
|+||+||| +|.||..++..|...+.. ..|.+ + |++.++++.. .+. .. .....++..++++ ++|
T Consensus 1 m~~I~iIG-~G~mG~~~a~~l~~~g~~---~~V~~--~--d~~~~~~~~~----~~~--g~--~~~~~~~~~~~~~~~aD 64 (281)
T 2g5c_A 1 MQNVLIVG-VGFMGGSFAKSLRRSGFK---GKIYG--Y--DINPESISKA----VDL--GI--IDEGTTSIAKVEDFSPD 64 (281)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCC---SEEEE--E--CSCHHHHHHH----HHT--TS--CSEEESCGGGGGGTCCS
T ss_pred CcEEEEEe-cCHHHHHHHHHHHhcCCC---cEEEE--E--eCCHHHHHHH----HHC--CC--cccccCCHHHHhcCCCC
Confidence 46999999 599999999999887641 12433 3 4455554421 111 11 1122344557888 999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
+||++... ....++.+.+..+..++++|+.++|.
T Consensus 65 vVilavp~----------------~~~~~v~~~l~~~l~~~~iv~~~~~~ 98 (281)
T 2g5c_A 65 FVMLSSPV----------------RTFREIAKKLSYILSEDATVTDQGSV 98 (281)
T ss_dssp EEEECSCH----------------HHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred EEEEcCCH----------------HHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 99998521 12234444455444677888877774
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00012 Score=69.43 Aligned_cols=109 Identities=13% Similarity=0.074 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCC--CCceEEEeccccchhh-----HHHhHHHhHhhhc----cCCcccEEEec
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGP--DQPIALKLLGSERSLQ-----ALEGVAMELEDSL----FPLLREVKIGI 164 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e--~~~v~L~L~d~d~~~~-----~l~g~a~DL~d~~----~~~~~~v~i~t 164 (337)
++||+|||+ |.||..++..|+..+.... ...|.+ ++. +++ .++....+-.... ..+...+..++
T Consensus 8 ~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~~V~~--~~r--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
T 1x0v_A 8 SKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDPRVTM--WVF--EEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVP 82 (354)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEEEEEE--ECC--CCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEES
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEE--EEc--ChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEc
Confidence 369999995 9999999999987662100 012444 333 333 3332211000000 01122456665
Q ss_pred CcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 165 ~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
+..+++++||+||++.. + ..+.++.+.|..+..++.+|+.++|-.
T Consensus 83 ~~~~~~~~aD~Vilav~----~------------~~~~~v~~~i~~~l~~~~ivv~~~~Gi 127 (354)
T 1x0v_A 83 DVVQAAEDADILIFVVP----H------------QFIGKICDQLKGHLKANATGISLIKGV 127 (354)
T ss_dssp SHHHHHTTCSEEEECCC----G------------GGHHHHHHHHTTCSCTTCEEEECCCCB
T ss_pred CHHHHHcCCCEEEEeCC----H------------HHHHHHHHHHHhhCCCCCEEEEECCcc
Confidence 55577899999999851 1 124555566766656788888888854
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00013 Score=63.80 Aligned_cols=101 Identities=12% Similarity=0.037 Sum_probs=62.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE---ecCcccccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI---GINPYELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i---~t~~~eal~dA 173 (337)
|||.|+||+|.+|++++..|+..+. .|.+ ..++.+++... .... ..+.. +..+.+++.++
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~-----~V~~----~~R~~~~~~~~----~~~~----~~~~~~D~~d~~~~~~~~~ 63 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGH-----EVLA----VVRDPQKAADR----LGAT----VATLVKEPLVLTEADLDSV 63 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHH----TCTT----SEEEECCGGGCCHHHHTTC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCC-----EEEE----EEecccccccc----cCCC----ceEEecccccccHhhcccC
Confidence 5899999999999999999998774 2443 23444443321 1100 01111 11111678999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
|+||.++|....+. ....|....+.+.+.+++. . ..+|+++
T Consensus 64 d~vi~~ag~~~~~~-----~~~~n~~~~~~l~~a~~~~-~--~~~v~~S 104 (224)
T 3h2s_A 64 DAVVDALSVPWGSG-----RGYLHLDFATHLVSLLRNS-D--TLAVFIL 104 (224)
T ss_dssp SEEEECCCCCTTSS-----CTHHHHHHHHHHHHTCTTC-C--CEEEEEC
T ss_pred CEEEECCccCCCcc-----hhhHHHHHHHHHHHHHHHc-C--CcEEEEe
Confidence 99999987642221 1345777778888877774 3 5677775
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00038 Score=63.78 Aligned_cols=93 Identities=15% Similarity=0.117 Sum_probs=55.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|+||+|||+ |.+|..++..|.. +. .|.+ + |++.++++.... .. +...+ ..+.++++|+
T Consensus 1 M~~i~iiG~-G~~G~~~a~~l~~-g~-----~V~~--~--~~~~~~~~~~~~----~g------~~~~~-~~~~~~~~D~ 58 (289)
T 2cvz_A 1 MEKVAFIGL-GAMGYPMAGHLAR-RF-----PTLV--W--NRTFEKALRHQE----EF------GSEAV-PLERVAEARV 58 (289)
T ss_dssp -CCEEEECC-STTHHHHHHHHHT-TS-----CEEE--E--CSSTHHHHHHHH----HH------CCEEC-CGGGGGGCSE
T ss_pred CCeEEEEcc-cHHHHHHHHHHhC-CC-----eEEE--E--eCCHHHHHHHHH----CC------CcccC-HHHHHhCCCE
Confidence 468999995 9999999999987 64 2544 3 445455443211 11 11223 4567889999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
||++...+ ..++++.+.+.+...++..|+..+|..
T Consensus 59 vi~~v~~~---------------~~~~~v~~~l~~~l~~~~~vv~~s~~~ 93 (289)
T 2cvz_A 59 IFTCLPTT---------------REVYEVAEALYPYLREGTYWVDATSGE 93 (289)
T ss_dssp EEECCSSH---------------HHHHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred EEEeCCCh---------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 99985321 112333445544445677777777754
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00012 Score=67.91 Aligned_cols=64 Identities=14% Similarity=0.237 Sum_probs=44.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
+||+||| +|.||..++..|+..+. .|.+ + |+++++++.. .+. .+...++..+++++||+|
T Consensus 2 ~~i~iIG-~G~mG~~~a~~l~~~G~-----~V~~--~--dr~~~~~~~~----~~~------g~~~~~~~~~~~~~aDvv 61 (287)
T 3pef_A 2 QKFGFIG-LGIMGSAMAKNLVKAGC-----SVTI--W--NRSPEKAEEL----AAL------GAERAATPCEVVESCPVT 61 (287)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--E--CSSGGGGHHH----HHT------TCEECSSHHHHHHHCSEE
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCC-----eEEE--E--cCCHHHHHHH----HHC------CCeecCCHHHHHhcCCEE
Confidence 6999999 59999999999998774 2544 3 4455554432 111 234445667788999999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
|++.
T Consensus 62 i~~v 65 (287)
T 3pef_A 62 FAML 65 (287)
T ss_dssp EECC
T ss_pred EEEc
Confidence 9875
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=97.58 E-value=6.1e-05 Score=71.58 Aligned_cols=102 Identities=16% Similarity=0.181 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHH-hHhhhc--cCCcccEEEecCcccccCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-ELEDSL--FPLLREVKIGINPYELFED 172 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~-DL~d~~--~~~~~~v~i~t~~~eal~d 172 (337)
++||+|||+ |.||..++..|+..+. .|.+ ++ ++ +.++.... .+.-.. ..+..++..++ +.+++.+
T Consensus 3 ~mkI~IiGa-G~~G~~~a~~L~~~g~-----~V~~--~~--r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~ 70 (335)
T 3ghy_A 3 LTRICIVGA-GAVGGYLGARLALAGE-----AINV--LA--RG-ATLQALQTAGLRLTEDGATHTLPVRATH-DAAALGE 70 (335)
T ss_dssp CCCEEEESC-CHHHHHHHHHHHHTTC-----CEEE--EC--CH-HHHHHHHHTCEEEEETTEEEEECCEEES-CHHHHCC
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCC-----EEEE--EE--Ch-HHHHHHHHCCCEEecCCCeEEEeeeEEC-CHHHcCC
Confidence 479999995 9999999999998774 2554 33 32 22222110 000000 00111233333 4556799
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
+|+||++.. ...++++.+.|..+..++..||.+.|..
T Consensus 71 ~D~Vilavk----------------~~~~~~~~~~l~~~l~~~~~iv~~~nGi 107 (335)
T 3ghy_A 71 QDVVIVAVK----------------APALESVAAGIAPLIGPGTCVVVAMNGV 107 (335)
T ss_dssp CSEEEECCC----------------HHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred CCEEEEeCC----------------chhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 999999851 1235566667776656888999999995
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00017 Score=67.40 Aligned_cols=94 Identities=7% Similarity=0.105 Sum_probs=56.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
..++||+||| .|.||..++..|+..+. .|.+ + |+++++++.. .+. .+...++..+.++ |
T Consensus 13 ~~~~~I~vIG-~G~mG~~~A~~l~~~G~-----~V~~--~--dr~~~~~~~~----~~~------g~~~~~~~~~~~~-a 71 (296)
T 3qha_A 13 TEQLKLGYIG-LGNMGAPMATRMTEWPG-----GVTV--Y--DIRIEAMTPL----AEA------GATLADSVADVAA-A 71 (296)
T ss_dssp --CCCEEEEC-CSTTHHHHHHHHTTSTT-----CEEE--E--CSSTTTSHHH----HHT------TCEECSSHHHHTT-S
T ss_pred cCCCeEEEEC-cCHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHHH----HHC------CCEEcCCHHHHHh-C
Confidence 3457999999 59999999999988774 2554 3 4454554432 111 2344455566677 9
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|+||++...+ +.++++.+.+.+...++.+||..++
T Consensus 72 Dvvi~~vp~~---------------~~~~~v~~~l~~~l~~g~ivv~~st 106 (296)
T 3qha_A 72 DLIHITVLDD---------------AQVREVVGELAGHAKPGTVIAIHST 106 (296)
T ss_dssp SEEEECCSSH---------------HHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred CEEEEECCCh---------------HHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 9999975321 2233444555554456666666654
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00036 Score=64.42 Aligned_cols=97 Identities=14% Similarity=0.083 Sum_probs=59.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
++||+||| +|.||..++..|...+. +. .|.+ + |++.++++.. .+. ... ...+++..++++++|+
T Consensus 6 ~~~I~iIG-~G~mG~~~a~~l~~~g~-~~--~V~~--~--d~~~~~~~~~----~~~--g~~--~~~~~~~~~~~~~aDv 69 (290)
T 3b1f_A 6 EKTIYIAG-LGLIGASLALGIKRDHP-HY--KIVG--Y--NRSDRSRDIA----LER--GIV--DEATADFKVFAALADV 69 (290)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHCT-TS--EEEE--E--CSSHHHHHHH----HHT--TSC--SEEESCTTTTGGGCSE
T ss_pred cceEEEEe-eCHHHHHHHHHHHhCCC-Cc--EEEE--E--cCCHHHHHHH----HHc--CCc--ccccCCHHHhhcCCCE
Confidence 57999999 59999999999987653 11 2433 3 4455554422 111 110 0233455567899999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhh-cCCCeEEEEeCCC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV-ASRNVKVIVVGNP 224 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~-a~p~aivIvvtNP 224 (337)
||++... ....++.+.+..+ ..++.+|+.++|.
T Consensus 70 Vilavp~----------------~~~~~v~~~l~~~~l~~~~ivi~~~~~ 103 (290)
T 3b1f_A 70 IILAVPI----------------KKTIDFIKILADLDLKEDVIITDAGST 103 (290)
T ss_dssp EEECSCH----------------HHHHHHHHHHHTSCCCTTCEEECCCSC
T ss_pred EEEcCCH----------------HHHHHHHHHHHhcCCCCCCEEEECCCC
Confidence 9998521 2235566666665 4678777777764
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=97.57 E-value=9.5e-05 Score=68.48 Aligned_cols=65 Identities=11% Similarity=0.197 Sum_probs=45.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|+||+||| +|.||..++..|+..+. .|.+ + |+++++++... +. .+...++..+++++||+
T Consensus 1 M~~I~iiG-~G~mG~~~a~~l~~~G~-----~V~~--~--dr~~~~~~~~~----~~------g~~~~~~~~~~~~~adv 60 (287)
T 3pdu_A 1 MTTYGFLG-LGIMGGPMAANLVRAGF-----DVTV--W--NRNPAKCAPLV----AL------GARQASSPAEVCAACDI 60 (287)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHHHHTC-----CEEE--E--CSSGGGGHHHH----HH------TCEECSCHHHHHHHCSE
T ss_pred CCeEEEEc-cCHHHHHHHHHHHHCCC-----eEEE--E--cCCHHHHHHHH----HC------CCeecCCHHHHHHcCCE
Confidence 46999999 59999999999998874 2554 3 44555544321 11 23444566778899999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
||++.
T Consensus 61 vi~~v 65 (287)
T 3pdu_A 61 TIAML 65 (287)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 99975
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=5.5e-05 Score=70.93 Aligned_cols=107 Identities=17% Similarity=0.108 Sum_probs=64.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhH--HHhHHHhHhhhccCCcccEEEecCcccccC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA--LEGVAMELEDSLFPLLREVKIGINPYELFE 171 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~--l~g~a~DL~d~~~~~~~~v~i~t~~~eal~ 171 (337)
.+.+||.|+||+|+||++++..|+..|. .|... +++.+. ++-...|+.|. ....++++
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-----~V~~~----~r~~~~~~~~~~~~Dl~d~-----------~~~~~~~~ 76 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGR-----TVRGF----DLRPSGTGGEEVVGSLEDG-----------QALSDAIM 76 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTC-----CEEEE----ESSCCSSCCSEEESCTTCH-----------HHHHHHHT
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCC-----EEEEE----eCCCCCCCccEEecCcCCH-----------HHHHHHHh
Confidence 4567999999999999999999998774 24432 222111 11111112111 01235678
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++|+||.+++..........+.+..|+.-...+.+.+.+. ... .||.+|
T Consensus 77 ~~d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~-~~V~~S 125 (347)
T 4id9_A 77 GVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAA-GVR-RFVFAS 125 (347)
T ss_dssp TCSEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHT-TCS-EEEEEE
T ss_pred CCCEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHc-CCC-eEEEEC
Confidence 9999999887543322333567788888888888888875 333 555555
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00024 Score=66.94 Aligned_cols=85 Identities=9% Similarity=-0.068 Sum_probs=43.8
Q ss_pred cceeeeeeeccchhhhhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhcc
Q 019713 75 YGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154 (337)
Q Consensus 75 ~gv~~~~~~~~~~~~~~~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~ 154 (337)
+|.||-.++... .+..+++||+||| +|.||..++..|+..+. . .|.+ +|.+.++++.+. +.+.
T Consensus 7 ~~~~~~~~~~~~----~~~~~~~~I~iIG-~G~mG~~~A~~L~~~G~-~---~V~~--~dr~~~~~~~~~----~~~~-- 69 (312)
T 3qsg_A 7 HSSGVDLGTENL----YFQSNAMKLGFIG-FGEAASAIASGLRQAGA-I---DMAA--YDAASAESWRPR----AEEL-- 69 (312)
T ss_dssp ----------------------CEEEEEC-CSHHHHHHHHHHHHHSC-C---EEEE--ECSSCHHHHHHH----HHHT--
T ss_pred cccccccCcccc----cccCCCCEEEEEC-ccHHHHHHHHHHHHCCC-C---eEEE--EcCCCCHHHHHH----HHHC--
Confidence 455555444432 2234568999999 59999999999998774 1 2443 343211233332 1111
Q ss_pred CCcccEEEecCcccccCCCcEEEEec
Q 019713 155 PLLREVKIGINPYELFEDAEWALLIG 180 (337)
Q Consensus 155 ~~~~~v~i~t~~~eal~dADvVIita 180 (337)
.+...++..+++++||+||++.
T Consensus 70 ----g~~~~~~~~e~~~~aDvVi~~v 91 (312)
T 3qsg_A 70 ----GVSCKASVAEVAGECDVIFSLV 91 (312)
T ss_dssp ----TCEECSCHHHHHHHCSEEEECS
T ss_pred ----CCEEeCCHHHHHhcCCEEEEec
Confidence 2344455667889999999975
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00017 Score=67.44 Aligned_cols=67 Identities=7% Similarity=-0.026 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+++||+||| +|.||..++..|+..|. .|.+ + |++.++++... +.. . ....++..+++++||
T Consensus 6 ~~~~I~iIG-~G~mG~~~a~~l~~~G~-----~V~~--~--dr~~~~~~~~~----~~g--~---~~~~~~~~e~~~~aD 66 (303)
T 3g0o_A 6 TDFHVGIVG-LGSMGMGAARSCLRAGL-----STWG--A--DLNPQACANLL----AEG--A---CGAAASAREFAGVVD 66 (303)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHH----HTT--C---SEEESSSTTTTTTCS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCC-----eEEE--E--ECCHHHHHHHH----HcC--C---ccccCCHHHHHhcCC
Confidence 357999999 59999999999998775 2544 3 45555554332 111 1 112456678889999
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+||++.
T Consensus 67 vvi~~v 72 (303)
T 3g0o_A 67 ALVILV 72 (303)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 999975
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00039 Score=65.83 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=58.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCccc-ccCCCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE-LFEDAE 174 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~e-al~dAD 174 (337)
.+||+||| +|.||.+++..|...|... .|.+ + |++++.++.. .++ ... ....++..+ ++++||
T Consensus 33 ~~kI~IIG-~G~mG~slA~~l~~~G~~~---~V~~--~--dr~~~~~~~a-~~~-----G~~--~~~~~~~~~~~~~~aD 96 (314)
T 3ggo_A 33 MQNVLIVG-VGFMGGSFAKSLRRSGFKG---KIYG--Y--DINPESISKA-VDL-----GII--DEGTTSIAKVEDFSPD 96 (314)
T ss_dssp CSEEEEES-CSHHHHHHHHHHHHTTCCS---EEEE--E--CSCHHHHHHH-HHT-----TSC--SEEESCTTGGGGGCCS
T ss_pred CCEEEEEe-eCHHHHHHHHHHHhCCCCC---EEEE--E--ECCHHHHHHH-HHC-----CCc--chhcCCHHHHhhccCC
Confidence 37999999 5999999999999888621 2443 3 4455554421 111 110 123344556 799999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+||++... . .+.++.+.+..+..++++|+.++.
T Consensus 97 vVilavp~----~------------~~~~vl~~l~~~l~~~~iv~d~~S 129 (314)
T 3ggo_A 97 FVMLSSPV----R------------TFREIAKKLSYILSEDATVTDQGS 129 (314)
T ss_dssp EEEECSCG----G------------GHHHHHHHHHHHSCTTCEEEECCS
T ss_pred EEEEeCCH----H------------HHHHHHHHHhhccCCCcEEEECCC
Confidence 99998521 1 123344455555467887776654
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=8.6e-05 Score=67.93 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=60.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+|||+ |.||..++..|+..+. .|.+ ++ ++.++++. +...... .......+..++.++++++|+|
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g~-----~V~~--~~--r~~~~~~~--l~~~~~~-~~~~~~~~~~~~~~~~~~~d~v 67 (291)
T 1ks9_A 1 MKITVLGC-GALGQLWLTALCKQGH-----EVQG--WL--RVPQPYCS--VNLVETD-GSIFNESLTANDPDFLATSDLL 67 (291)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--EC--SSCCSEEE--EEEECTT-SCEEEEEEEESCHHHHHTCSEE
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCC-----CEEE--EE--cCccceee--EEEEcCC-CceeeeeeeecCccccCCCCEE
Confidence 58999995 9999999999998764 2544 33 33333321 1111000 0000122223456788999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
|++...+ .+.++.+.+..+..++.+|+.++|..+.
T Consensus 68 i~~v~~~----------------~~~~v~~~l~~~l~~~~~vv~~~~g~~~ 102 (291)
T 1ks9_A 68 LVTLKAW----------------QVSDAVKSLASTLPVTTPILLIHNGMGT 102 (291)
T ss_dssp EECSCGG----------------GHHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred EEEecHH----------------hHHHHHHHHHhhCCCCCEEEEecCCCCc
Confidence 9986221 0244555666655677788888997754
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00017 Score=66.68 Aligned_cols=65 Identities=11% Similarity=0.218 Sum_probs=43.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+||| +|.+|..++..|...+. .|.+ + |++.++++... +. .+....+..+.++++|+|
T Consensus 6 m~i~iiG-~G~~G~~~a~~l~~~g~-----~V~~--~--~~~~~~~~~~~----~~------g~~~~~~~~~~~~~~D~v 65 (299)
T 1vpd_A 6 MKVGFIG-LGIMGKPMSKNLLKAGY-----SLVV--S--DRNPEAIADVI----AA------GAETASTAKAIAEQCDVI 65 (299)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHH----HT------TCEECSSHHHHHHHCSEE
T ss_pred ceEEEEC-chHHHHHHHHHHHhCCC-----EEEE--E--eCCHHHHHHHH----HC------CCeecCCHHHHHhCCCEE
Confidence 6999999 59999999999988764 2443 3 44555544321 11 123444555678899999
Q ss_pred EEecc
Q 019713 177 LLIGA 181 (337)
Q Consensus 177 Iitag 181 (337)
|++..
T Consensus 66 i~~v~ 70 (299)
T 1vpd_A 66 ITMLP 70 (299)
T ss_dssp EECCS
T ss_pred EEECC
Confidence 99863
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00019 Score=67.21 Aligned_cols=66 Identities=12% Similarity=0.209 Sum_probs=44.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
.++||+|||+ |.||..++..|...+. .|.+ + |++.++++.. .+. .+....+..++++++|
T Consensus 29 ~~~~I~iIG~-G~mG~~~a~~l~~~g~-----~V~~--~--~~~~~~~~~~----~~~------g~~~~~~~~~~~~~~D 88 (316)
T 2uyy_A 29 TDKKIGFLGL-GLMGSGIVSNLLKMGH-----TVTV--W--NRTAEKCDLF----IQE------GARLGRTPAEVVSTCD 88 (316)
T ss_dssp CSSCEEEECC-SHHHHHHHHHHHHTTC-----CEEE--E--CSSGGGGHHH----HHT------TCEECSCHHHHHHHCS
T ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCC-----EEEE--E--eCCHHHHHHH----HHc------CCEEcCCHHHHHhcCC
Confidence 3579999995 9999999999988764 2544 3 4444554432 111 1233445567788999
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+||++.
T Consensus 89 vVi~av 94 (316)
T 2uyy_A 89 ITFACV 94 (316)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 999975
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00038 Score=65.21 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=60.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhh--ccCCcccEEEec--CcccccCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS--LFPLLREVKIGI--NPYELFED 172 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~--~~~~~~~v~i~t--~~~eal~d 172 (337)
|||+|||+ |.||..++..|+..+. .|.+ ++.+.++++++....+-... ...+ .++..++ +..+++++
T Consensus 1 m~I~iiG~-G~mG~~~a~~L~~~g~-----~V~~--~~r~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~ 71 (335)
T 1txg_A 1 MIVSILGA-GAMGSALSVPLVDNGN-----EVRI--WGTEFDTEILKSISAGREHPRLGVKL-NGVEIFWPEQLEKCLEN 71 (335)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCC-----EEEE--ECCGGGHHHHHHHHTTCCBTTTTBCC-CSEEEECGGGHHHHHTT
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC-----eEEE--EEccCCHHHHHHHHHhCcCcccCccc-cceEEecHHhHHHHHhc
Confidence 58999995 9999999999988764 2544 33311445544322110000 0011 2345544 44467899
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
+|+||++...+ .+.++.+.+.. ..++.+||.++|..
T Consensus 72 ~D~vi~~v~~~----------------~~~~v~~~i~~-l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 72 AEVVLLGVSTD----------------GVLPVMSRILP-YLKDQYIVLISKGL 107 (335)
T ss_dssp CSEEEECSCGG----------------GHHHHHHHHTT-TCCSCEEEECCCSE
T ss_pred CCEEEEcCChH----------------HHHHHHHHHhc-CCCCCEEEEEcCcC
Confidence 99999986221 12334444544 36777888888876
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00051 Score=68.40 Aligned_cols=112 Identities=17% Similarity=0.148 Sum_probs=67.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHH-----------h-HhhhccCCcccEE
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-----------E-LEDSLFPLLREVK 161 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~-----------D-L~d~~~~~~~~v~ 161 (337)
.+|.+|+||| .|.||..+|-.|+..|. .|. -+|+ ++++.+.+.. | +.+.. -..+++
T Consensus 19 ~~m~~IaViG-lGYVGLp~A~~~A~~G~-----~V~--g~Di--d~~kV~~ln~G~~pi~Epgl~ell~~~~--~~g~l~ 86 (444)
T 3vtf_A 19 SHMASLSVLG-LGYVGVVHAVGFALLGH-----RVV--GYDV--NPSIVERLRAGRPHIYEPGLEEALGRAL--SSGRLS 86 (444)
T ss_dssp CCCCEEEEEC-CSHHHHHHHHHHHHHTC-----EEE--EECS--CHHHHHHHHTTCCSSCCTTHHHHHHHHH--HTTCEE
T ss_pred CCCCEEEEEc-cCHHHHHHHHHHHhCCC-----cEE--EEEC--CHHHHHHHHCCCCCCCCCCHHHHHHHHH--HcCCee
Confidence 4578999999 69999999999998775 233 3344 4455443211 0 11111 013577
Q ss_pred EecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEE
Q 019713 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIV 220 (337)
Q Consensus 162 i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIv 220 (337)
.+++..+++++||++|++.+.|.++.. ..|+-. -....+.+++.|+.. +++.+||+
T Consensus 87 ~tt~~~~ai~~ad~~~I~VpTP~~~d~-~~Dl~~-v~~a~~~I~~~l~~~-~~g~lVV~ 142 (444)
T 3vtf_A 87 FAESAEEAVAATDATFIAVGTPPAPDG-SADLRY-VEAAARAVGRGIRAK-GRWHLVVV 142 (444)
T ss_dssp ECSSHHHHHHTSSEEEECCCCCBCTTS-SBCCHH-HHHHHHHHHHHHHHH-CSCCEEEE
T ss_pred EEcCHHHHHhcCCceEEEecCCCCCCC-CCCcHH-HHHHHHHHHHHHhhc-CCCeEEEE
Confidence 777778899999999999888754322 122211 124456677777654 34444444
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00056 Score=60.67 Aligned_cols=77 Identities=16% Similarity=0.162 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
.++||+||| +|.||..++..|+..+. .|.+ +| ++++ ++++||
T Consensus 18 ~~~~I~iiG-~G~mG~~la~~l~~~g~-----~V~~--~~--~~~~----------------------------~~~~aD 59 (209)
T 2raf_A 18 QGMEITIFG-KGNMGQAIGHNFEIAGH-----EVTY--YG--SKDQ----------------------------ATTLGE 59 (209)
T ss_dssp --CEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--EC--TTCC----------------------------CSSCCS
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE--Ec--CCHH----------------------------HhccCC
Confidence 457999999 59999999999988764 2443 33 2222 578999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
+||++.. .+.++++.+.+..... +.+|+.++|+.+
T Consensus 60 ~vi~av~----------------~~~~~~v~~~l~~~~~-~~~vi~~~~g~~ 94 (209)
T 2raf_A 60 IVIMAVP----------------YPALAALAKQYATQLK-GKIVVDITNPLN 94 (209)
T ss_dssp EEEECSC----------------HHHHHHHHHHTHHHHT-TSEEEECCCCBC
T ss_pred EEEEcCC----------------cHHHHHHHHHHHHhcC-CCEEEEECCCCC
Confidence 9999852 1223444455554434 778899999665
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0011 Score=60.56 Aligned_cols=92 Identities=21% Similarity=0.136 Sum_probs=58.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+|||+ |.||..++..|...+. .|.+ + |++.++++.. .+. .. .....++..+. +++|+|
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g~-----~V~~--~--~~~~~~~~~~----~~~--g~--~~~~~~~~~~~-~~~D~v 61 (279)
T 2f1k_A 1 MKIGVVGL-GLIGASLAGDLRRRGH-----YLIG--V--SRQQSTCEKA----VER--QL--VDEAGQDLSLL-QTAKII 61 (279)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHH----HHT--TS--CSEEESCGGGG-TTCSEE
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCC-----EEEE--E--ECCHHHHHHH----HhC--CC--CccccCCHHHh-CCCCEE
Confidence 58999995 9999999999988764 2443 3 4555555432 111 11 11233444455 999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|++.. .+.+.++.+.+.....++++|+.++|
T Consensus 62 i~av~----------------~~~~~~~~~~l~~~~~~~~~vv~~~~ 92 (279)
T 2f1k_A 62 FLCTP----------------IQLILPTLEKLIPHLSPTAIVTDVAS 92 (279)
T ss_dssp EECSC----------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred EEECC----------------HHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 99852 12345566667665567878777755
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00069 Score=62.57 Aligned_cols=94 Identities=12% Similarity=0.203 Sum_probs=59.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|+||+|||++|.+|..++..|...+. .|.+ + |++.++++.. .+. . +.. ++..+.++++|+
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~-----~V~~--~--~r~~~~~~~~----~~~--g----~~~-~~~~~~~~~aDv 70 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAH-----HLAA--I--EIAPEGRDRL----QGM--G----IPL-TDGDGWIDEADV 70 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSS-----EEEE--E--CCSHHHHHHH----HHT--T----CCC-CCSSGGGGTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-----EEEE--E--ECCHHHHHHH----Hhc--C----CCc-CCHHHHhcCCCE
Confidence 46999999449999999999988774 2443 3 4455554432 111 1 111 245678899999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
||++... ..++++.+.+.....++.+|+..++..
T Consensus 71 Vi~av~~----------------~~~~~v~~~l~~~l~~~~ivv~~s~~~ 104 (286)
T 3c24_A 71 VVLALPD----------------NIIEKVAEDIVPRVRPGTIVLILDAAA 104 (286)
T ss_dssp EEECSCH----------------HHHHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred EEEcCCc----------------hHHHHHHHHHHHhCCCCCEEEECCCCc
Confidence 9998521 124556666666545677766666643
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00029 Score=66.59 Aligned_cols=102 Identities=14% Similarity=0.032 Sum_probs=57.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhH----hhhccCCcccE-EEecCccccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL----EDSLFPLLREV-KIGINPYELF 170 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL----~d~~~~~~~~v-~i~t~~~eal 170 (337)
++||+|||+ |.+|..++..|+..+. .|.+ + ++++++++...... .........++ ..+++..+++
T Consensus 4 ~mki~iiG~-G~~G~~~a~~L~~~g~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (359)
T 1bg6_A 4 SKTYAVLGL-GNGGHAFAAYLALKGQ-----SVLA--W--DIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV 73 (359)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCC-----EEEE--E--eCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHH
Confidence 479999995 9999999999988763 2544 3 44445544322110 00000000112 2344444668
Q ss_pred CCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+++|+||++...+. ..++.+.+.....++..|+...|
T Consensus 74 ~~~D~vi~~v~~~~----------------~~~~~~~l~~~l~~~~~vv~~~~ 110 (359)
T 1bg6_A 74 KDADVILIVVPAIH----------------HASIAANIASYISEGQLIILNPG 110 (359)
T ss_dssp TTCSEEEECSCGGG----------------HHHHHHHHGGGCCTTCEEEESSC
T ss_pred hcCCEEEEeCCchH----------------HHHHHHHHHHhCCCCCEEEEcCC
Confidence 99999999863210 13444556555456766665534
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00015 Score=63.86 Aligned_cols=94 Identities=27% Similarity=0.241 Sum_probs=56.2
Q ss_pred CCE-EEEEcCCCchHHHHHHHHH-HcCCCCCCCceEEEeccccchhh-HHHhHHHhHhhhccCCcccEEEe-c---C---
Q 019713 96 MVN-IAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQ-ALEGVAMELEDSLFPLLREVKIG-I---N--- 165 (337)
Q Consensus 96 ~~K-I~IIGAaG~VG~~la~~L~-~~~l~~e~~~v~L~L~d~d~~~~-~l~g~a~DL~d~~~~~~~~v~i~-t---~--- 165 (337)
|+| |.|+||+|.+|.+++..|+ ..+. .|.+ + +++.+ +++..+ ... .++... . +
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g~-----~V~~--~--~r~~~~~~~~~~----~~~----~~~~~~~~D~~d~~~ 66 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTDM-----HITL--Y--GRQLKTRIPPEI----IDH----ERVTVIEGSFQNPGX 66 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCCC-----EEEE--E--ESSHHHHSCHHH----HTS----TTEEEEECCTTCHHH
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCCc-----eEEE--E--ecCccccchhhc----cCC----CceEEEECCCCCHHH
Confidence 445 9999999999999999999 6664 2443 2 34444 433221 000 112211 1 1
Q ss_pred cccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 166 ~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
..++++++|+||.++|.+ |.. .+.+.+.+++. .. ..||++|
T Consensus 67 ~~~~~~~~d~vv~~ag~~-------------n~~-~~~~~~~~~~~-~~-~~iv~iS 107 (221)
T 3r6d_A 67 LEQAVTNAEVVFVGAMES-------------GSD-MASIVKALSRX-NI-RRVIGVS 107 (221)
T ss_dssp HHHHHTTCSEEEESCCCC-------------HHH-HHHHHHHHHHT-TC-CEEEEEE
T ss_pred HHHHHcCCCEEEEcCCCC-------------Chh-HHHHHHHHHhc-CC-CeEEEEe
Confidence 135678999999988643 333 66777777764 33 3566655
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00086 Score=60.73 Aligned_cols=65 Identities=20% Similarity=0.157 Sum_probs=43.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+|||+ |.||..++..|+..+. . .|.+ + |++.++++.... .. .+....+..+.+ ++|+|
T Consensus 1 m~i~iiG~-G~mG~~~a~~l~~~g~--~--~v~~--~--~r~~~~~~~~~~----~~-----g~~~~~~~~~~~-~~D~v 61 (263)
T 1yqg_A 1 MNVYFLGG-GNMAAAVAGGLVKQGG--Y--RIYI--A--NRGAEKRERLEK----EL-----GVETSATLPELH-SDDVL 61 (263)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCS--C--EEEE--E--CSSHHHHHHHHH----HT-----CCEEESSCCCCC-TTSEE
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCC--C--eEEE--E--CCCHHHHHHHHH----hc-----CCEEeCCHHHHh-cCCEE
Confidence 58999995 9999999999987763 1 2544 3 455555543321 11 133444555677 99999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
|++.
T Consensus 62 i~~v 65 (263)
T 1yqg_A 62 ILAV 65 (263)
T ss_dssp EECS
T ss_pred EEEe
Confidence 9985
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00022 Score=66.34 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=61.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--cC---ccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--IN---PYE 168 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t~---~~e 168 (337)
.++|||.|+||+|++|++++..|+..+. .|.+ + +++.+..+. +.+.. ..+... ++ ..+
T Consensus 11 ~~~M~ilVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~----l~~~~----~~~~~~Dl~d~~~~~~ 73 (342)
T 2x4g_A 11 GAHVKYAVLGATGLLGHHAARAIRAAGH-----DLVL--I--HRPSSQIQR----LAYLE----PECRVAEMLDHAGLER 73 (342)
T ss_dssp -CCCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE--E--ECTTSCGGG----GGGGC----CEEEECCTTCHHHHHH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE--E--ecChHhhhh----hccCC----eEEEEecCCCHHHHHH
Confidence 3456999999999999999999998763 2433 2 223222211 11100 011111 01 125
Q ss_pred ccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 al~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+++++|+||.+++.......+..+....|+.-...+.+.+.+. .. ..+|.+|-
T Consensus 74 ~~~~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~~v~~SS 126 (342)
T 2x4g_A 74 ALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQA-RV-PRILYVGS 126 (342)
T ss_dssp HTTTCSEEEEC------------CHHHHHHHHHHHHHHHHHHH-TC-SCEEEECC
T ss_pred HHcCCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHc-CC-CeEEEECC
Confidence 6789999999887543212234456788888888888888875 32 35666663
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00096 Score=61.79 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=67.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--c------Cc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--I------NP 166 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t------~~ 166 (337)
+.++|.|+||+|++|++++..|+..|. .|.+. +++.+.++.....+.+.. + .++... . ..
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~~~~~~~~~~-~--~~~~~~~~~D~~d~~~~ 77 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHGY-----KVRGT----ARSASKLANLQKRWDAKY-P--GRFETAVVEDMLKQGAY 77 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESSHHHHHHHHHHHHHHS-T--TTEEEEECSCTTSTTTT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-----EEEEE----eCCcccHHHHHHHhhccC-C--CceEEEEecCCcChHHH
Confidence 346999999999999999999998764 24432 233333322211121110 0 122211 1 12
Q ss_pred ccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 ~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+++.|+||.+++.... +.+..+.+..|+.-...+.+.+.+. .....||++|-
T Consensus 78 ~~~~~~~d~vih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~-~~~~~iv~~SS 132 (342)
T 1y1p_A 78 DEVIKGAAGVAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAAT-PSVKRFVLTSS 132 (342)
T ss_dssp TTTTTTCSEEEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTC-TTCCEEEEECC
T ss_pred HHHHcCCCEEEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhC-CCCcEEEEecc
Confidence 2456689999998875432 2344456778888888888877642 22346777664
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00021 Score=64.78 Aligned_cols=93 Identities=13% Similarity=0.160 Sum_probs=59.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
++||+|||+ |.||..++..|...+.... ..|.+ +| ++.++ . .+.+.++..++++++|+
T Consensus 4 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~~-~~v~~--~~--~~~~~-~---------------g~~~~~~~~~~~~~~D~ 61 (262)
T 2rcy_A 4 NIKLGFMGL-GQMGSALAHGIANANIIKK-ENLFY--YG--PSKKN-T---------------TLNYMSSNEELARHCDI 61 (262)
T ss_dssp SSCEEEECC-SHHHHHHHHHHHHHTSSCG-GGEEE--EC--SSCCS-S---------------SSEECSCHHHHHHHCSE
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCCCC-CeEEE--Ee--CCccc-C---------------ceEEeCCHHHHHhcCCE
Confidence 469999995 9999999999988774210 12544 33 33332 0 12344455677889999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
||++.. +. .++++.+.+..+. ++..|+..+|.++.
T Consensus 62 vi~~v~----~~------------~~~~v~~~l~~~l-~~~~vv~~~~gi~~ 96 (262)
T 2rcy_A 62 IVCAVK----PD------------IAGSVLNNIKPYL-SSKLLISICGGLNI 96 (262)
T ss_dssp EEECSC----TT------------THHHHHHHSGGGC-TTCEEEECCSSCCH
T ss_pred EEEEeC----HH------------HHHHHHHHHHHhc-CCCEEEEECCCCCH
Confidence 999852 11 1344555566653 66778888888765
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00012 Score=67.53 Aligned_cols=65 Identities=9% Similarity=0.093 Sum_probs=41.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+||||+|||+ |.||..++..|...+. .|. ++| +.++++... +. .+....+..+.++++|
T Consensus 2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~-----~V~--~~~---~~~~~~~~~----~~------g~~~~~~~~~~~~~~D 60 (295)
T 1yb4_A 2 NAMKLGFIGL-GIMGSPMAINLARAGH-----QLH--VTT---IGPVADELL----SL------GAVNVETARQVTEFAD 60 (295)
T ss_dssp --CEEEECCC-STTHHHHHHHHHHTTC-----EEE--ECC---SSCCCHHHH----TT------TCBCCSSHHHHHHTCS
T ss_pred CCCEEEEEcc-CHHHHHHHHHHHhCCC-----EEE--EEc---CHHHHHHHH----Hc------CCcccCCHHHHHhcCC
Confidence 4579999995 9999999999988664 244 343 333433221 11 1122334556788999
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+||++.
T Consensus 61 ~vi~~v 66 (295)
T 1yb4_A 61 IIFIMV 66 (295)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 999875
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0003 Score=70.65 Aligned_cols=104 Identities=12% Similarity=0.116 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
+|||.|+||+|+||++++..|+..|. .|.. + +++....+....|+. ....++++++|+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~-----~V~~--l--~R~~~~~~~v~~d~~-------------~~~~~~l~~~D~ 204 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGH-----EVIQ--L--VRKEPKPGKRFWDPL-------------NPASDLLDGADV 204 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE--E--ESSSCCTTCEECCTT-------------SCCTTTTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE--E--ECCCCCccceeeccc-------------chhHHhcCCCCE
Confidence 78999999999999999999998764 2433 2 233222211111111 123567889999
Q ss_pred EEEecccCCCC---CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 176 ALLIGAKPRGP---GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 176 VIitag~prk~---g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
||.+++..... .....++...|+.-...+.+.+.+.... ..||.+|
T Consensus 205 Vih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~-~r~V~~S 253 (516)
T 3oh8_A 205 LVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQC-TTMISAS 253 (516)
T ss_dssp EEECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSC-CEEEEEE
T ss_pred EEECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEeC
Confidence 99988764211 1233456777888888888875543222 2566655
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00028 Score=68.27 Aligned_cols=96 Identities=15% Similarity=0.183 Sum_probs=59.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
.+++||+||| .|.||..++..|+..+. .|.+ + |++.++++.. .+. .+...++..+.++++
T Consensus 20 m~~mkIgiIG-lG~mG~~~A~~L~~~G~-----~V~v--~--dr~~~~~~~l----~~~------g~~~~~s~~e~~~~a 79 (358)
T 4e21_A 20 FQSMQIGMIG-LGRMGADMVRRLRKGGH-----ECVV--Y--DLNVNAVQAL----ERE------GIAGARSIEEFCAKL 79 (358)
T ss_dssp --CCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHH----HTT------TCBCCSSHHHHHHHS
T ss_pred hcCCEEEEEC-chHHHHHHHHHHHhCCC-----EEEE--E--eCCHHHHHHH----HHC------CCEEeCCHHHHHhcC
Confidence 3457999999 59999999999998874 2544 3 4555555432 211 122334455667778
Q ss_pred ---cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 174 ---EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 174 ---DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
|+||++...+ .++++.+.|.....++.+||..+|-.
T Consensus 80 ~~~DvVi~~vp~~----------------~v~~vl~~l~~~l~~g~iiId~st~~ 118 (358)
T 4e21_A 80 VKPRVVWLMVPAA----------------VVDSMLQRMTPLLAANDIVIDGGNSH 118 (358)
T ss_dssp CSSCEEEECSCGG----------------GHHHHHHHHGGGCCTTCEEEECSSCC
T ss_pred CCCCEEEEeCCHH----------------HHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 9999875211 13344455666556788888887643
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00098 Score=62.97 Aligned_cols=70 Identities=17% Similarity=0.063 Sum_probs=43.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch-hhHHHhHHHhHhhhccCCcccEEEec-CcccccCCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDA 173 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~-~~~l~g~a~DL~d~~~~~~~~v~i~t-~~~eal~dA 173 (337)
++||+||| +|.||..++..|+..|.. .|.+ +|.+.. .++.+.....+... . + .+ +..+++++|
T Consensus 24 ~m~IgvIG-~G~mG~~lA~~L~~~G~~----~V~~--~dr~~~~~~~~~~~~~~~~~~--g----~--~~~s~~e~~~~a 88 (317)
T 4ezb_A 24 MTTIAFIG-FGEAAQSIAGGLGGRNAA----RLAA--YDLRFNDPAASGALRARAAEL--G----V--EPLDDVAGIACA 88 (317)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTTCS----EEEE--ECGGGGCTTTHHHHHHHHHHT--T----C--EEESSGGGGGGC
T ss_pred CCeEEEEC-ccHHHHHHHHHHHHcCCC----eEEE--EeCCCccccchHHHHHHHHHC--C----C--CCCCHHHHHhcC
Confidence 47999999 599999999999987721 2443 343321 12222222222221 1 1 34 567889999
Q ss_pred cEEEEec
Q 019713 174 EWALLIG 180 (337)
Q Consensus 174 DvVIita 180 (337)
|+||++.
T Consensus 89 DvVi~av 95 (317)
T 4ezb_A 89 DVVLSLV 95 (317)
T ss_dssp SEEEECC
T ss_pred CEEEEec
Confidence 9999975
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00036 Score=65.38 Aligned_cols=119 Identities=14% Similarity=-0.004 Sum_probs=67.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccC-CcccEEEe-cC-----
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-LLREVKIG-IN----- 165 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~-~~~~v~i~-t~----- 165 (337)
+.+++||.|+||+|++|++++..|+..+. .|.......+...+.+. ++...... ...++.+. .|
T Consensus 22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~~~r~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~d~~ 92 (351)
T 3ruf_A 22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQ-----VVIGLDNFSTGHQYNLD----EVKTLVSTEQWSRFCFIEGDIRDLT 92 (351)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCSSCCHHHHH----HHHHTSCHHHHTTEEEEECCTTCHH
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCC-----EEEEEeCCCCCchhhhh----hhhhccccccCCceEEEEccCCCHH
Confidence 34568999999999999999999998774 24332111111122222 12211000 00122221 11
Q ss_pred -cccccCCCcEEEEecccCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 166 -PYELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 166 -~~eal~dADvVIitag~prk~g--~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
..++++++|+||.+++....+. .+..+....|+.-...+.+.+.+. ... .+|.+|
T Consensus 93 ~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~-~~v~~S 150 (351)
T 3ruf_A 93 TCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNA-QVQ-SFTYAA 150 (351)
T ss_dssp HHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCS-EEEEEE
T ss_pred HHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEEe
Confidence 1356789999999987532111 123346778888888888888875 333 556655
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00049 Score=65.09 Aligned_cols=75 Identities=12% Similarity=0.075 Sum_probs=45.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccC-CcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-LLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~-~~~~v~i~t~~~eal~dA 173 (337)
.++||+|||+ |.||..++..|+..|. .|.+ + +++.++++....+-.....+ ...++..+++..+ ++++
T Consensus 13 ~~~kI~iIG~-G~mG~ala~~L~~~G~-----~V~~--~--~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~a 81 (335)
T 1z82_A 13 MEMRFFVLGA-GSWGTVFAQMLHENGE-----EVIL--W--ARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKE 81 (335)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--CSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTT
T ss_pred cCCcEEEECc-CHHHHHHHHHHHhCCC-----eEEE--E--eCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCC
Confidence 4579999995 9999999999998764 3554 3 44455554432210000000 0003455555555 8999
Q ss_pred cEEEEec
Q 019713 174 EWALLIG 180 (337)
Q Consensus 174 DvVIita 180 (337)
|+||++.
T Consensus 82 DvVil~v 88 (335)
T 1z82_A 82 DILVIAI 88 (335)
T ss_dssp EEEEECS
T ss_pred CEEEEEC
Confidence 9999975
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00071 Score=62.73 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=59.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc-----C-CCCCCCceEEEeccccchhhHHHhHHHhHh-hhccC----CcccEEEe
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAG-----E-VLGPDQPIALKLLGSERSLQALEGVAMELE-DSLFP----LLREVKIG 163 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~-----~-l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~-d~~~~----~~~~v~i~ 163 (337)
++|||+|||+ |.||..++..|+.. + . .|.+ + ++ .++++....+.. ..... ...++..+
T Consensus 7 ~~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~-----~V~~--~--~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 75 (317)
T 2qyt_A 7 QPIKIAVFGL-GGVGGYYGAMLALRAAATDGLL-----EVSW--I--AR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVT 75 (317)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHHHHHHTTSSE-----EEEE--E--CC-HHHHHHHHHHTSEEEECSSCEEEECCSEEE
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCccccCCCC-----CEEE--E--Ec-HHHHHHHHhcCCeEEEeCCCCeEEecceEe
Confidence 3479999995 99999999999876 5 2 2544 3 33 333332211000 00000 00112233
Q ss_pred cCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 164 t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
++.++++++|+||++...+ . +.++.+.|..+..++..||.++|..+.
T Consensus 76 -~~~~~~~~~D~vil~vk~~----~------------~~~v~~~i~~~l~~~~~iv~~~nG~~~ 122 (317)
T 2qyt_A 76 -DNPAEVGTVDYILFCTKDY----D------------MERGVAEIRPMIGQNTKILPLLNGADI 122 (317)
T ss_dssp -SCHHHHCCEEEEEECCSSS----C------------HHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred -cCccccCCCCEEEEecCcc----c------------HHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence 3446688999999985221 1 234445565554567778888887654
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00028 Score=58.54 Aligned_cols=95 Identities=18% Similarity=0.233 Sum_probs=59.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.+||+|||+ |.+|..++..|...+. .+.+ .+++.++++..+.++. ..+....+..+.++++|+
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~-----~v~v----~~r~~~~~~~~a~~~~-------~~~~~~~~~~~~~~~~Di 83 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQY-----KVTV----AGRNIDHVRAFAEKYE-------YEYVLINDIDSLIKNNDV 83 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTC-----EEEE----EESCHHHHHHHHHHHT-------CEEEECSCHHHHHHTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE----EcCCHHHHHHHHHHhC-------CceEeecCHHHHhcCCCE
Confidence 569999995 9999999988766442 2443 3556666655444332 123333455677899999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
||.+.+.+. +-... ... .++..++.+++|.|+
T Consensus 84 vi~at~~~~-~~~~~------------------~~l-~~g~~vid~~~p~~~ 115 (144)
T 3oj0_A 84 IITATSSKT-PIVEE------------------RSL-MPGKLFIDLGNPPNI 115 (144)
T ss_dssp EEECSCCSS-CSBCG------------------GGC-CTTCEEEECCSSCSB
T ss_pred EEEeCCCCC-cEeeH------------------HHc-CCCCEEEEccCCccC
Confidence 998865442 11110 111 357789999999754
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0015 Score=65.37 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=61.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC---CC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---DA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~---dA 173 (337)
|||+||| +|.||..++..|+..|. .|.+ + +++.++++....+... . +....+..+++..+.++ ++
T Consensus 2 MkIgVIG-~G~mG~~lA~~La~~G~-----~V~v--~--dr~~~~~~~l~~~~g~-~-~~~~~i~~~~~~~e~v~~l~~a 69 (478)
T 1pgj_A 2 MDVGVVG-LGVMGANLALNIAEKGF-----KVAV--F--NRTYSKSEEFMKANAS-A-PFAGNLKAFETMEAFAASLKKP 69 (478)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE--E--CSSHHHHHHHHHHTTT-S-TTGGGEEECSCHHHHHHHBCSS
T ss_pred CEEEEEC-hHHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHhcCC-C-CCCCCeEEECCHHHHHhcccCC
Confidence 5899999 59999999999998775 2554 2 4555555543221110 0 11123555544444444 59
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
|+||++... + +.++++.+.|.....++.+||..+|-..
T Consensus 70 DvVilaVp~----~-----------~~v~~vl~~l~~~l~~g~iIId~sng~~ 107 (478)
T 1pgj_A 70 RKALILVQA----G-----------AATDSTIEQLKKVFEKGDILVDTGNAHF 107 (478)
T ss_dssp CEEEECCCC----S-----------HHHHHHHHHHHHHCCTTCEEEECCCCCH
T ss_pred CEEEEecCC----h-----------HHHHHHHHHHHhhCCCCCEEEECCCCCh
Confidence 999998521 1 1233344455555457778888888653
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00053 Score=64.33 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=46.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+++||+||| .|.||..++..|+..+. .|.+ + |++.++++... +. .+...++..+++++||
T Consensus 8 ~~~~IgiIG-~G~mG~~~A~~l~~~G~-----~V~~--~--dr~~~~~~~~~----~~------g~~~~~~~~e~~~~aD 67 (306)
T 3l6d_A 8 FEFDVSVIG-LGAMGTIMAQVLLKQGK-----RVAI--W--NRSPGKAAALV----AA------GAHLCESVKAALSASP 67 (306)
T ss_dssp CSCSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE--E--CSSHHHHHHHH----HH------TCEECSSHHHHHHHSS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHH----HC------CCeecCCHHHHHhcCC
Confidence 457999999 59999999999998775 2544 2 45555555332 11 1233455677889999
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+||++.
T Consensus 68 vVi~~v 73 (306)
T 3l6d_A 68 ATIFVL 73 (306)
T ss_dssp EEEECC
T ss_pred EEEEEe
Confidence 999975
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00048 Score=60.38 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=59.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe----cC----ccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG----IN----PYE 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~----t~----~~e 168 (337)
|||.|+||+|.+|++++..|+..|. .|.+ + +++.++++. + .++.+. ++ ..+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~-----~V~~--~--~R~~~~~~~----~--------~~~~~~~~D~~d~~~~~~~ 59 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDY-----QIYA--G--ARKVEQVPQ----Y--------NNVKAVHFDVDWTPEEMAK 59 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSC-----EEEE--E--ESSGGGSCC----C--------TTEEEEECCTTSCHHHHHT
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCC-----EEEE--E--ECCccchhh----c--------CCceEEEecccCCHHHHHH
Confidence 5899999999999999999988763 2443 2 333332221 0 111111 11 235
Q ss_pred ccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 al~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+++++|+||.++|.... +.+..|..-...+.+.+++. .. ..+|++|-
T Consensus 60 ~~~~~d~vi~~ag~~~~------~~~~~n~~~~~~l~~a~~~~-~~-~~iv~~SS 106 (219)
T 3dqp_A 60 QLHGMDAIINVSGSGGK------SLLKVDLYGAVKLMQAAEKA-EV-KRFILLST 106 (219)
T ss_dssp TTTTCSEEEECCCCTTS------SCCCCCCHHHHHHHHHHHHT-TC-CEEEEECC
T ss_pred HHcCCCEEEECCcCCCC------CcEeEeHHHHHHHHHHHHHh-CC-CEEEEECc
Confidence 68899999999876531 23445656566677777764 22 36676664
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0012 Score=66.10 Aligned_cols=100 Identities=18% Similarity=0.178 Sum_probs=63.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC---C
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED---A 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d---A 173 (337)
+||+||| +|.||..++..|+..|. .|.+ + +++.++++....+.. ...+..+++..+.+++ +
T Consensus 16 ~~IgvIG-lG~MG~~lA~~La~~G~-----~V~v--~--~r~~~~~~~l~~~~~------~~gi~~~~s~~e~v~~l~~a 79 (480)
T 2zyd_A 16 QQIGVVG-MAVMGRNLALNIESRGY-----TVSI--F--NRSREKTEEVIAENP------GKKLVPYYTVKEFVESLETP 79 (480)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHTTTC-----CEEE--E--CSSHHHHHHHHHHST------TSCEEECSSHHHHHHTBCSS
T ss_pred CeEEEEc-cHHHHHHHHHHHHhCCC-----eEEE--E--eCCHHHHHHHHhhCC------CCCeEEeCCHHHHHhCCCCC
Confidence 4899999 59999999999998775 2554 2 455566554322111 0135555555566666 9
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
|+||++... +. .++++.+.|.....++.+||..+|-...
T Consensus 80 DvVil~Vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~s~g~~~ 118 (480)
T 2zyd_A 80 RRILLMVKA----GA-----------GTDAAIDSLKPYLDKGDIIIDGGNTFFQ 118 (480)
T ss_dssp CEEEECSCS----SS-----------HHHHHHHHHGGGCCTTCEEEECSCCCHH
T ss_pred CEEEEECCC----HH-----------HHHHHHHHHHhhcCCCCEEEECCCCCHH
Confidence 999998521 11 2334445566655677888888987643
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00074 Score=62.32 Aligned_cols=107 Identities=12% Similarity=0.129 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
++||.|+||+|++|++++..|...+. .|.. + +++.+... +.... ....++. .....++++++|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~-----~~~~~-~~~~Dl~-~~~~~~~~~~~d~ 65 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGN-----TPII--L--TRSIGNKA-----INDYE-YRVSDYT-LEDLINQLNDVDA 65 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCCC----------CCE-EEECCCC-HHHHHHHTTTCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-----EEEE--E--eCCCCccc-----CCceE-EEEcccc-HHHHHHhhcCCCE
Confidence 46999999999999999999998764 2433 2 22212211 11110 0001111 1223467889999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
||.+++..... +..+....|+.-.+.+.+.+.+. ... .+|.+|
T Consensus 66 Vih~a~~~~~~--~~~~~~~~n~~~~~~ll~a~~~~-~~~-r~v~~S 108 (311)
T 3m2p_A 66 VVHLAATRGSQ--GKISEFHDNEILTQNLYDACYEN-NIS-NIVYAS 108 (311)
T ss_dssp EEECCCCCCSS--SCGGGTHHHHHHHHHHHHHHHHT-TCC-EEEEEE
T ss_pred EEEccccCCCC--ChHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEEc
Confidence 99988754322 34456778888888899888875 333 466655
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0031 Score=62.93 Aligned_cols=100 Identities=17% Similarity=0.173 Sum_probs=62.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC---C
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED---A 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d---A 173 (337)
+||+||| +|.||..++..|+..+. .|.+ + +++.++++....+.. ...+..+++..+.+++ +
T Consensus 6 ~~IgvIG-~G~mG~~lA~~L~~~G~-----~V~v--~--dr~~~~~~~l~~~~~------~~gi~~~~s~~e~v~~l~~a 69 (474)
T 2iz1_A 6 ANFGVVG-MAVMGKNLALNVESRGY-----TVAI--Y--NRTTSKTEEVFKEHQ------DKNLVFTKTLEEFVGSLEKP 69 (474)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE--E--CSSHHHHHHHHHHTT------TSCEEECSSHHHHHHTBCSS
T ss_pred CcEEEEe-eHHHHHHHHHHHHhCCC-----EEEE--E--cCCHHHHHHHHHhCc------CCCeEEeCCHHHHHhhccCC
Confidence 6899999 59999999999998775 2554 2 455566554322111 0134454444455554 9
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
|+||++... + +.++++.+.|.....++.+||..+|-...
T Consensus 70 DvVilavp~----~-----------~~v~~vl~~l~~~l~~g~iiId~s~~~~~ 108 (474)
T 2iz1_A 70 RRIMLMVQA----G-----------AATDATIKSLLPLLDIGDILIDGGNTHFP 108 (474)
T ss_dssp CEEEECCCT----T-----------HHHHHHHHHHGGGCCTTCEEEECSCCCHH
T ss_pred CEEEEEccC----c-----------hHHHHHHHHHHhhCCCCCEEEECCCCCHH
Confidence 999997521 1 12344445566655677788888887543
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0007 Score=63.76 Aligned_cols=107 Identities=15% Similarity=0.195 Sum_probs=59.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccC-C-cccEEEecCcccccCCCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-L-LREVKIGINPYELFEDAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~-~-~~~v~i~t~~~eal~dAD 174 (337)
+||+|||+ |.+|..++..|+..+. .|.+ ++.+. .+.+...-+.+.....+ . ..++.++++..++.+++|
T Consensus 3 mkI~IiGa-GaiG~~~a~~L~~~g~-----~V~~--~~r~~-~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~D 73 (320)
T 3i83_A 3 LNILVIGT-GAIGSFYGALLAKTGH-----CVSV--VSRSD-YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPD 73 (320)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHTTC-----EEEE--ECSTT-HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC-----eEEE--EeCCh-HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCC
Confidence 79999995 9999999999998763 3554 33322 12221110011110000 0 002334444434445999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~ 228 (337)
+||++. |+... .+..+.|..+..++..|+.+.|-.+..
T Consensus 74 lVilav----K~~~~------------~~~l~~l~~~l~~~t~Iv~~~nGi~~~ 111 (320)
T 3i83_A 74 CTLLCI----KVVEG------------ADRVGLLRDAVAPDTGIVLISNGIDIE 111 (320)
T ss_dssp EEEECC----CCCTT------------CCHHHHHTTSCCTTCEEEEECSSSSCS
T ss_pred EEEEec----CCCCh------------HHHHHHHHhhcCCCCEEEEeCCCCChH
Confidence 999985 22221 223344555546778888999987643
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00038 Score=64.89 Aligned_cols=116 Identities=12% Similarity=0.107 Sum_probs=65.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-C--c---
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--P--- 166 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~--~--- 166 (337)
|.+.++|.|+||+|.||++++..|+..|. .|.+ ++. +.+.......++.... . .++.... | +
T Consensus 2 M~~~~~vlVTGatG~iG~~l~~~L~~~G~-----~V~~--~~r--~~~~~~~~~~~~~~~~-~--~~~~~~~~Dl~d~~~ 69 (341)
T 3enk_A 2 MSTKGTILVTGGAGYIGSHTAVELLAHGY-----DVVI--ADN--LVNSKREAIARIEKIT-G--KTPAFHETDVSDERA 69 (341)
T ss_dssp CCSSCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--ECC--CSSSCTHHHHHHHHHH-S--CCCEEECCCTTCHHH
T ss_pred CCCCcEEEEecCCcHHHHHHHHHHHHCCC-----cEEE--Eec--CCcchHHHHHHHHhhc-C--CCceEEEeecCCHHH
Confidence 44567999999999999999999998774 2443 222 2111111111222111 0 0111111 1 1
Q ss_pred -ccccC--CCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 167 -YELFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 167 -~eal~--dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.+.++ +.|+||.++|..... .....+.+..|+.-...+.+.+.+. ... .||++|
T Consensus 70 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~-~iv~~S 128 (341)
T 3enk_A 70 LARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRER-AVK-RIVFSS 128 (341)
T ss_dssp HHHHHHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-EEEEEE
T ss_pred HHHHHhccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhC-CCC-EEEEEe
Confidence 23344 799999988753211 0122355677888888888888875 333 556655
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0004 Score=60.20 Aligned_cols=106 Identities=16% Similarity=0.158 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhH----HHhHHHhHhhhccCCcccEEEecCcccccC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA----LEGVAMELEDSLFPLLREVKIGINPYELFE 171 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~----l~g~a~DL~d~~~~~~~~v~i~t~~~eal~ 171 (337)
.+||.|+||+|.+|++++..|+..+.+.+ |. .++ ++.+. .+-...|+.+.. ...+++
T Consensus 5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~---V~--~~~--r~~~~~~~~~~~~~~D~~~~~-----------~~~~~~- 65 (215)
T 2a35_A 5 PKRVLLAGATGLTGEHLLDRILSEPTLAK---VI--APA--RKALAEHPRLDNPVGPLAELL-----------PQLDGS- 65 (215)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCE---EE--CCB--SSCCCCCTTEECCBSCHHHHG-----------GGCCSC-
T ss_pred CceEEEECCCcHHHHHHHHHHHhCCCCCe---EE--EEe--CCCcccCCCceEEeccccCHH-----------HHHHhh-
Confidence 46899999999999999999998775311 33 232 22221 000111222111 111223
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.|+||.++|.......+..+....|......+.+.+.+. ... .+|++|-
T Consensus 66 -~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~-~~v~~Ss 114 (215)
T 2a35_A 66 -IDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEM-GAR-HYLVVSA 114 (215)
T ss_dssp -CSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHT-TCC-EEEEECC
T ss_pred -hcEEEECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHc-CCC-EEEEECC
Confidence 899999887543222234456777888888888888775 232 5666664
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0023 Score=58.68 Aligned_cols=101 Identities=14% Similarity=0.066 Sum_probs=60.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||.|+||+|+||++++..|...|. .|.. + .++.+.. .+.....+.+++.++|.|
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~-----~V~~-l---~R~~~~~----------------~~~~~~~~~~~l~~~d~v 55 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGH-----EVTL-V---SRKPGPG----------------RITWDELAASGLPSCDAA 55 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE-E---ESSCCTT----------------EEEHHHHHHHCCCSCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEE-E---ECCCCcC----------------eeecchhhHhhccCCCEE
Confidence 7999999999999999999998875 2432 1 2221110 111001134678899999
Q ss_pred EEecccCCC-----CCC-chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 177 LLIGAKPRG-----PGM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 177 Iitag~prk-----~g~-~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
|-.++.+-. ... ...+....|+...+.+.+.+++...+..++|.+|
T Consensus 56 ihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~S 107 (298)
T 4b4o_A 56 VNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVT 107 (298)
T ss_dssp EECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEE
T ss_pred EEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEe
Confidence 988764321 111 2234566777777777777776533333444443
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00046 Score=66.91 Aligned_cols=101 Identities=16% Similarity=0.018 Sum_probs=55.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEecc-ccchhhHHHhHHHhHh---hhccC-C-----cccEE-Ee
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLG-SERSLQALEGVAMELE---DSLFP-L-----LREVK-IG 163 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~-~l~~e~~~v~L~L~d-~d~~~~~l~g~a~DL~---d~~~~-~-----~~~v~-i~ 163 (337)
+|||+|||| |.+|..++..|+.. +. .|.+ ++ .+++.+.++....+.. ..... . ..++. ++
T Consensus 2 ~mkI~ViGa-G~~G~~~a~~La~~~G~-----~V~~--~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 73 (404)
T 3c7a_A 2 TVKVCVCGG-GNGAHTLSGLAASRDGV-----EVRV--LTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVIT 73 (404)
T ss_dssp CEEEEEECC-SHHHHHHHHHHTTSTTE-----EEEE--ECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEE
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCCC-----EEEE--EeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEe
Confidence 469999995 99999999999763 53 2544 33 1144444443111000 00000 0 01122 44
Q ss_pred cCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEE
Q 019713 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIV 220 (337)
Q Consensus 164 t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIv 220 (337)
++..++++++|+||++...+ ..+++.+.|..+..++.+|+.
T Consensus 74 ~~~~~a~~~aD~Vilav~~~----------------~~~~v~~~l~~~l~~~~ivv~ 114 (404)
T 3c7a_A 74 KDPEIAISGADVVILTVPAF----------------AHEGYFQAMAPYVQDSALIVG 114 (404)
T ss_dssp SCHHHHHTTCSEEEECSCGG----------------GHHHHHHHHTTTCCTTCEEEE
T ss_pred CCHHHHhCCCCEEEEeCchH----------------HHHHHHHHHHhhCCCCcEEEE
Confidence 45556789999999985221 124555666666556665544
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0015 Score=65.61 Aligned_cols=101 Identities=14% Similarity=0.163 Sum_probs=61.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCccccc---C
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF---E 171 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal---~ 171 (337)
.++||+||| .|.||..+|..|+..|. .|.+. |++.++++..... .. ...++....+..+.+ +
T Consensus 3 ~~~kIgiIG-lG~MG~~lA~~L~~~G~-----~V~v~----dr~~~~~~~l~~~---g~--~g~~i~~~~s~~e~v~~l~ 67 (484)
T 4gwg_A 3 AQADIALIG-LAVMGQNLILNMNDHGF-----VVCAF----NRTVSKVDDFLAN---EA--KGTKVVGAQSLKEMVSKLK 67 (484)
T ss_dssp CCBSEEEEC-CSHHHHHHHHHHHHTTC-----CEEEE----CSSTHHHHHHHHT---TT--TTSSCEECSSHHHHHHTBC
T ss_pred CCCEEEEEC-hhHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHhc---cc--CCCceeccCCHHHHHhhcc
Confidence 457999999 59999999999999875 25542 4555665543211 00 111333333433433 4
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
++|+||++... + +.++++.+.+..+..++.+||..+|-.
T Consensus 68 ~aDvVil~Vp~----~-----------~~v~~vl~~l~~~L~~g~iIId~st~~ 106 (484)
T 4gwg_A 68 KPRRIILLVKA----G-----------QAVDDFIEKLVPLLDTGDIIIDGGNSE 106 (484)
T ss_dssp SSCEEEECSCS----S-----------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred CCCEEEEecCC----h-----------HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 69999997522 1 223444455655556777888888754
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00055 Score=60.95 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=56.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
++||+||| +|.+|..++..|...+. .|.+ .+++.++++.. .+. .+... +..++++++|+
T Consensus 28 ~~~I~iiG-~G~~G~~la~~l~~~g~-----~V~~----~~r~~~~~~~~----~~~------g~~~~-~~~~~~~~~Dv 86 (215)
T 2vns_A 28 APKVGILG-SGDFARSLATRLVGSGF-----KVVV----GSRNPKRTARL----FPS------AAQVT-FQEEAVSSPEV 86 (215)
T ss_dssp -CCEEEEC-CSHHHHHHHHHHHHTTC-----CEEE----EESSHHHHHHH----SBT------TSEEE-EHHHHTTSCSE
T ss_pred CCEEEEEc-cCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHH----HHc------CCcee-cHHHHHhCCCE
Confidence 47899999 59999999999988764 2544 24555554322 111 12222 34577899999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
||++.. +.. ..+++ . +.... ++.+|+.++|+...
T Consensus 87 Vi~av~----~~~-~~~v~-------~-----l~~~~-~~~~vv~~s~g~~~ 120 (215)
T 2vns_A 87 IFVAVF----REH-YSSLC-------S-----LSDQL-AGKILVDVSNPTEQ 120 (215)
T ss_dssp EEECSC----GGG-SGGGG-------G-----GHHHH-TTCEEEECCCCCHH
T ss_pred EEECCC----hHH-HHHHH-------H-----HHHhc-CCCEEEEeCCCccc
Confidence 998763 111 11111 1 22332 57789999998754
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0027 Score=59.85 Aligned_cols=119 Identities=16% Similarity=0.144 Sum_probs=64.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH--cCCCCCCCceEEEeccccchhhH-HHhHHHhHhhhccCCcccEE-EecC--c--
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAA--GEVLGPDQPIALKLLGSERSLQA-LEGVAMELEDSLFPLLREVK-IGIN--P-- 166 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~--~~l~~e~~~v~L~L~d~d~~~~~-l~g~a~DL~d~~~~~~~~v~-i~t~--~-- 166 (337)
+++||.|+||+|+||++++..|+. .+. .|.+ ++....... .......+.+.......++. +..| +
T Consensus 9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~-----~V~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 81 (362)
T 3sxp_A 9 ENQTILITGGAGFVGSNLAFHFQENHPKA-----KVVV--LDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPL 81 (362)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCTTS-----EEEE--EECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCC-----eEEE--EECCCccccccccchhhhhhhhhccccCceEEECCCCCHH
Confidence 357999999999999999999998 554 2433 222111000 00000000000000000111 1111 1
Q ss_pred --ccc-cCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 --YEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 --~ea-l~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+. ..++|+||.+||.......+..+.+..|+.-...+.+.+++. +++||++|-
T Consensus 82 ~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~---~~~~V~~SS 138 (362)
T 3sxp_A 82 DLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSK---KAKVIYASS 138 (362)
T ss_dssp HHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHT---TCEEEEEEE
T ss_pred HHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHc---CCcEEEeCc
Confidence 122 679999999988543223345567888988888888888775 234666653
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0037 Score=62.53 Aligned_cols=100 Identities=14% Similarity=0.185 Sum_probs=59.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCccccc---CCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF---EDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal---~dA 173 (337)
+||+||| +|.||..++..|+..+. .|.+ + +++.++++..... +. + ...+..+++..+.+ +++
T Consensus 3 m~IgvIG-~G~mG~~lA~~La~~G~-----~V~v--~--dr~~~~~~~l~~~--~~--~-g~gi~~~~~~~e~v~~l~~a 67 (482)
T 2pgd_A 3 ADIALIG-LAVMGQNLILNMNDHGF-----VVCA--F--NRTVSKVDDFLAN--EA--K-GTKVLGAHSLEEMVSKLKKP 67 (482)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE--E--CSSTHHHHHHHHT--TT--T-TSSCEECSSHHHHHHHBCSS
T ss_pred CeEEEEC-hHHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHHHHhc--cc--c-CCCeEEeCCHHHHHhhccCC
Confidence 5899999 59999999999998775 2554 2 4555555543220 00 0 01244444444443 599
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
|+||++... + +.++++.+.|..+..++.+||..+|-..
T Consensus 68 DvVilaVp~----~-----------~~v~~vl~~l~~~l~~g~iII~~s~~~~ 105 (482)
T 2pgd_A 68 RRIILLVKA----G-----------QAVDNFIEKLVPLLDIGDIIIDGGNSEY 105 (482)
T ss_dssp CEEEECSCT----T-----------HHHHHHHHHHHHHCCTTCEEEECSCCCH
T ss_pred CEEEEeCCC----h-----------HHHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence 999997521 1 1233344455555456777888887653
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0023 Score=59.45 Aligned_cols=115 Identities=13% Similarity=0.151 Sum_probs=62.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ec------Cccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI------NPYE 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t------~~~e 168 (337)
.+||.|+||+|+||++++..|+..|. .|.....+.+ +.+.+.. ..++... .++.+ .. ...+
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~-----~V~~~~r~~~-~~~~~~~-~~~~~~~-----~~~~~~~~Dl~d~~~~~~ 76 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGY-----AVNTTVRDPD-NQKKVSH-LLELQEL-----GDLKIFRADLTDELSFEA 76 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTC-----EEEEEESCTT-CTTTTHH-HHHHGGG-----SCEEEEECCTTTSSSSHH
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-----EEEEEEcCcc-hhhhHHH-HHhcCCC-----CcEEEEecCCCChHHHHH
Confidence 36899999999999999999998774 2443222211 1111110 0112110 11221 11 1235
Q ss_pred ccCCCcEEEEecccCCCCCCc-hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 al~dADvVIitag~prk~g~~-R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+++++|+||.+++.......+ ..+.+..|+.-...+.+.+.+. ..-..||++|-
T Consensus 77 ~~~~~D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~-~~v~r~V~~SS 131 (338)
T 2rh8_A 77 PIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRA-KSVKRVILTSS 131 (338)
T ss_dssp HHTTCSEEEEESSCCCC---------CHHHHHHHHHHHHHHHHC-TTCCEEEEECC
T ss_pred HHcCCCEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHc-CCcCEEEEEec
Confidence 678999999887643111111 1236778888888888887774 21236777664
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0018 Score=60.28 Aligned_cols=117 Identities=9% Similarity=0.147 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ec------Ccc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI------NPY 167 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t------~~~ 167 (337)
+++||.|+||+|+||++++..|+..|. .|.....+.+ +.+++... .++.+. ..++.+ .. ...
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~-----~V~~~~r~~~-~~~~~~~~-~~~~~~----~~~~~~~~~Dl~d~~~~~ 72 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGY-----TVRATVRDPT-NVKKVKHL-LDLPKA----ETHLTLWKADLADEGSFD 72 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTC-----EEEEEESCTT-CHHHHHHH-HTSTTH----HHHEEEEECCTTSTTTTH
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-----EEEEEECCcc-hhHHHHHH-HhcccC----CCeEEEEEcCCCCHHHHH
Confidence 456899999999999999999998774 2443221111 11111111 111110 011221 11 123
Q ss_pred cccCCCcEEEEecccCCCCCCc-hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ELFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 eal~dADvVIitag~prk~g~~-R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
++++++|+||.+++.......+ ..+.+..|+.-...+.+.+.+. ..-..||++|-
T Consensus 73 ~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~-~~~~riV~~SS 128 (337)
T 2c29_D 73 EAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAA-KTVRRLVFTSS 128 (337)
T ss_dssp HHHTTCSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHH-SCCCEEEEECC
T ss_pred HHHcCCCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhC-CCccEEEEeee
Confidence 5678999999888643211112 2246778888888888887775 32236666663
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0023 Score=57.35 Aligned_cols=116 Identities=9% Similarity=-0.013 Sum_probs=67.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cccc-
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL- 169 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~-~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~ea- 169 (337)
+.++|.|+||+|.||.+++..|+. .+. .|.+. +++.+.++....++.+.. .++.. ..| +.+.
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-----~V~~~----~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~~ 69 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-----DVVLT----ARDVTRGQAAVQQLQAEG----LSPRFHQLDIDDLQSI 69 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-----EEEEE----ESSHHHHHHHHHHHHHTT----CCCEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-----eEEEE----eCChHHHHHHHHHHHhcC----CeeEEEECCCCCHHHH
Confidence 456899999999999999999998 674 24442 344455554444444321 11111 111 1111
Q ss_pred ---c-------CCCcEEEEecccCCCCCC------chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 ---F-------EDAEWALLIGAKPRGPGM------ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 ---l-------~dADvVIitag~prk~g~------~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+ .+.|+||..+|....... +-...+..|..-...+.+.+.+...+.+.||+++-
T Consensus 70 ~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS 139 (276)
T 1wma_A 70 RALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS 139 (276)
T ss_dssp HHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred HHHHHHHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence 2 278999998886432211 11234666766666666766665333457777775
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0012 Score=58.37 Aligned_cols=115 Identities=11% Similarity=0.142 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.++|.|+||+|.+|.+++..|+..|.+.+ |.+ + +++.+.++... ..... ....++.-..+..+.+++.|+
T Consensus 18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~---V~~--~--~r~~~~~~~~~--~~~~~-~~~~D~~d~~~~~~~~~~~d~ 87 (242)
T 2bka_A 18 NKSVFILGASGETGRVLLKEILEQGLFSK---VTL--I--GRRKLTFDEEA--YKNVN-QEVVDFEKLDDYASAFQGHDV 87 (242)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSE---EEE--E--ESSCCCCCSGG--GGGCE-EEECCGGGGGGGGGGGSSCSE
T ss_pred CCeEEEECCCcHHHHHHHHHHHcCCCCCE---EEE--E--EcCCCCccccc--cCCce-EEecCcCCHHHHHHHhcCCCE
Confidence 46899999999999999999998875322 443 2 22222221100 00000 000000000112356778999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
||.++|.... +.+..+....|..-...+.+.+.+. .. ..||++|-
T Consensus 88 vi~~ag~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~-~~-~~iv~~SS 132 (242)
T 2bka_A 88 GFCCLGTTRG-KAGAEGFVRVDRDYVLKSAELAKAG-GC-KHFNLLSS 132 (242)
T ss_dssp EEECCCCCHH-HHHHHHHHHHHTHHHHHHHHHHHHT-TC-CEEEEECC
T ss_pred EEECCCcccc-cCCcccceeeeHHHHHHHHHHHHHC-CC-CEEEEEcc
Confidence 9999875321 1122345667777777777877764 33 35666664
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0011 Score=56.73 Aligned_cols=101 Identities=14% Similarity=0.090 Sum_probs=59.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC------cccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN------PYEL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~------~~ea 169 (337)
+||.|+||+|.+|++++..|+..+. .|.+ + +++.+.+.. +. ..++.. ..| ..++
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~-----~V~~--~--~r~~~~~~~----~~------~~~~~~~~~D~~~~~~~~~~ 64 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGY-----EVTV--L--VRDSSRLPS----EG------PRPAHVVVGDVLQAADVDKT 64 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCGGGSCS----SS------CCCSEEEESCTTSHHHHHHH
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC-----eEEE--E--EeChhhccc----cc------CCceEEEEecCCCHHHHHHH
Confidence 6899999999999999999998763 2443 2 233332211 00 011111 111 1356
Q ss_pred cCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 l~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
++++|+||.++|...... ....|......+.+.+.+. ... .+|++|-
T Consensus 65 ~~~~d~vi~~a~~~~~~~-----~~~~n~~~~~~~~~~~~~~-~~~-~~v~~Ss 111 (206)
T 1hdo_A 65 VAGQDAVIVLLGTRNDLS-----PTTVMSEGARNIVAAMKAH-GVD-KVVACTS 111 (206)
T ss_dssp HTTCSEEEECCCCTTCCS-----CCCHHHHHHHHHHHHHHHH-TCC-EEEEECC
T ss_pred HcCCCEEEECccCCCCCC-----ccchHHHHHHHHHHHHHHh-CCC-eEEEEee
Confidence 788999999887543211 1135666677777777775 333 5666653
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0042 Score=62.57 Aligned_cols=101 Identities=9% Similarity=0.123 Sum_probs=62.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC---
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--- 172 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d--- 172 (337)
..||+||| +|.||..++..|+..|. .|.+ + +++.++++..... .. + ...+..+.+..+.+++
T Consensus 10 ~~~IgvIG-lG~MG~~lA~~La~~G~-----~V~v--~--dr~~~~~~~l~~~---~~-~-~~gi~~~~s~~e~v~~l~~ 74 (497)
T 2p4q_A 10 SADFGLIG-LAVMGQNLILNAADHGF-----TVCA--Y--NRTQSKVDHFLAN---EA-K-GKSIIGATSIEDFISKLKR 74 (497)
T ss_dssp CCSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE--E--CSSSHHHHHHHHT---TT-T-TSSEECCSSHHHHHHTSCS
T ss_pred CCCEEEEe-eHHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHcc---cc-c-CCCeEEeCCHHHHHhcCCC
Confidence 35899999 59999999999998875 2554 2 4555555533210 00 0 0134444444455555
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
+|+||++... + +.++++.+.|..+..++.+||..+|-..
T Consensus 75 aDvVil~Vp~----~-----------~~v~~vl~~l~~~l~~g~iIId~s~~~~ 113 (497)
T 2p4q_A 75 PRKVMLLVKA----G-----------APVDALINQIVPLLEKGDIIIDGGNSHF 113 (497)
T ss_dssp SCEEEECCCS----S-----------HHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred CCEEEEEcCC----h-----------HHHHHHHHHHHHhCCCCCEEEECCCCCh
Confidence 9999998521 1 2244555666666567778888888643
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00082 Score=62.78 Aligned_cols=116 Identities=11% Similarity=0.056 Sum_probs=63.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-C--c----
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--P---- 166 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~--~---- 166 (337)
.+++||.|+||+|++|++++..|+..+.- +.+..++......... .+.+.. . ..++.+.. | +
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~-----~~v~~~~~~~~~~~~~----~l~~~~-~-~~~~~~~~~Dl~d~~~~ 90 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYET-----YKIINFDALTYSGNLN----NVKSIQ-D-HPNYYFVKGEIQNGELL 90 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTT-----EEEEEEECCCTTCCGG----GGTTTT-T-CTTEEEEECCTTCHHHH
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCC-----cEEEEEeccccccchh----hhhhhc-c-CCCeEEEEcCCCCHHHH
Confidence 45679999999999999999999987731 2222222211111111 111111 0 01233211 1 1
Q ss_pred ccccCC--CcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 167 YELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 167 ~eal~d--ADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.+++++ +|+||.+++..... ..+..+.+..|+.-...+.+.+.+. ... .+|.+|
T Consensus 91 ~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~-~~v~~S 148 (346)
T 4egb_A 91 EHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKY-PHI-KLVQVS 148 (346)
T ss_dssp HHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHS-TTS-EEEEEE
T ss_pred HHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhc-CCC-EEEEeC
Confidence 234555 99999988754211 1234456788888888888888875 333 466665
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0018 Score=59.69 Aligned_cols=112 Identities=17% Similarity=0.149 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|+||.|+||+|+||++++..|+..+. .+.+ .. .+....+. +.........++.- .+..++++++|+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~-----~v~~--~~--~~~~~~~~----~~~~~~~~~~Dl~~-~~~~~~~~~~d~ 66 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESNE-----IVVI--DN--LSSGNEEF----VNEAARLVKADLAA-DDIKDYLKGAEE 66 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTSC-----EEEE--CC--CSSCCGGG----SCTTEEEECCCTTT-SCCHHHHTTCSE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-----EEEE--Ec--CCCCChhh----cCCCcEEEECcCCh-HHHHHHhcCCCE
Confidence 46899999999999999999987762 1333 11 11111110 00000000000100 122456789999
Q ss_pred EEEecccCCC--CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 176 ALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 176 VIitag~prk--~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
||.+++.+.. ...+..+.+..|+.-...+.+.+.+. ... .+|++|-
T Consensus 67 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~-~iv~~SS 114 (313)
T 3ehe_A 67 VWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKA-GVS-RIVFTST 114 (313)
T ss_dssp EEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH-TCC-EEEEECC
T ss_pred EEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCC-eEEEeCc
Confidence 9998875432 12234556788888888888888875 333 6666663
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0016 Score=60.81 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=51.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
+||+||||+|.||.+++..|...+. .|.+ +| ++.+. +..+++++||+|
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~G~-----~V~~--~~--~~~~~-----------------------~~~~~~~~aDvV 69 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASGY-----PISI--LD--REDWA-----------------------VAESILANADVV 69 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTC-----CEEE--EC--TTCGG-----------------------GHHHHHTTCSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-----eEEE--EE--CCccc-----------------------CHHHHhcCCCEE
Confidence 5899999449999999999988775 2544 33 32210 234678899999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|++... ..+.++.+.+..+..++++|+.++.
T Consensus 70 ilavp~----------------~~~~~vl~~l~~~l~~~~iv~~~~s 100 (298)
T 2pv7_A 70 IVSVPI----------------NLTLETIERLKPYLTENMLLADLTS 100 (298)
T ss_dssp EECSCG----------------GGHHHHHHHHGGGCCTTSEEEECCS
T ss_pred EEeCCH----------------HHHHHHHHHHHhhcCCCcEEEECCC
Confidence 998621 1144455556655467776665543
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0051 Score=57.42 Aligned_cols=111 Identities=13% Similarity=0.152 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-C-cccccCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N-PYELFED 172 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~-~~eal~d 172 (337)
+++||.|+||+|++|++++..|+..+. .|.. ++. +...... .+.+.. . ..++.+.. | ...++.+
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~~r--~~~~~~~---~~~~~~-~-~~~~~~~~~D~~~~~~~~ 91 (343)
T 2b69_A 26 DRKRILITGGAGFVGSHLTDKLMMDGH-----EVTV--VDN--FFTGRKR---NVEHWI-G-HENFELINHDVVEPLYIE 91 (343)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EEC--CSSCCGG---GTGGGT-T-CTTEEEEECCTTSCCCCC
T ss_pred CCCEEEEEcCccHHHHHHHHHHHHCCC-----EEEE--EeC--CCccchh---hhhhhc-c-CCceEEEeCccCChhhcC
Confidence 457999999999999999999998764 2433 222 1111000 011110 0 11233221 1 2245789
Q ss_pred CcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 173 AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 173 ADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+|+||.+++..... ..+..+.+..|+.-...+.+.+.+. . +.+|++|
T Consensus 92 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~--~~~v~~S 140 (343)
T 2b69_A 92 VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV-G--ARLLLAS 140 (343)
T ss_dssp CSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-T--CEEEEEE
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-C--CcEEEEC
Confidence 99999988753211 1123345678888888888888775 3 3666665
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00072 Score=63.44 Aligned_cols=109 Identities=13% Similarity=0.066 Sum_probs=61.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC-cccEEEecCcccccCCCcE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAEW 175 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~t~~~eal~dADv 175 (337)
+||+|||| |.+|..++..|+..+. .|.+. +.+. .+.+...-..+....... ..++.+++ +.+++.++|+
T Consensus 3 mkI~IiGa-GaiG~~~a~~L~~~g~-----~V~~~--~r~~-~~~i~~~g~~~~~~~g~~~~~~~~~~~-~~~~~~~~D~ 72 (312)
T 3hn2_A 3 LRIAIVGA-GALGLYYGALLQRSGE-----DVHFL--LRRD-YEAIAGNGLKVFSINGDFTLPHVKGYR-APEEIGPMDL 72 (312)
T ss_dssp -CEEEECC-STTHHHHHHHHHHTSC-----CEEEE--CSTT-HHHHHHTCEEEEETTCCEEESCCCEES-CHHHHCCCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC-----eEEEE--EcCc-HHHHHhCCCEEEcCCCeEEEeeceeec-CHHHcCCCCE
Confidence 69999995 9999999999998764 26553 3221 111110000000000000 00223333 4566889999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHH
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i 231 (337)
||++. |+.. +++..+.|+.+..++..||.+.|-++....+
T Consensus 73 vilav----k~~~------------~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l 112 (312)
T 3hn2_A 73 VLVGL----KTFA------------NSRYEELIRPLVEEGTQILTLQNGLGNEEAL 112 (312)
T ss_dssp EEECC----CGGG------------GGGHHHHHGGGCCTTCEEEECCSSSSHHHHH
T ss_pred EEEec----CCCC------------cHHHHHHHHhhcCCCCEEEEecCCCCcHHHH
Confidence 99985 2211 2344555666556788899999988755433
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0017 Score=60.99 Aligned_cols=120 Identities=8% Similarity=-0.005 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHh-HhhhccCCcccEEEecCcccccCCCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-LEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~D-L~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+|||+|||| |.||..++..|+ .+. .|.+. +++.+.++....+ +. ...+-...........++..++|
T Consensus 2 ~mkI~IiGa-Ga~G~~~a~~L~-~g~-----~V~~~----~r~~~~~~~l~~~G~~-~~~~~~~~~~~~~~~~~~~~~~D 69 (307)
T 3ego_A 2 SLKIGIIGG-GSVGLLCAYYLS-LYH-----DVTVV----TRRQEQAAAIQSEGIR-LYKGGEEFRADCSADTSINSDFD 69 (307)
T ss_dssp CCEEEEECC-SHHHHHHHHHHH-TTS-----EEEEE----CSCHHHHHHHHHHCEE-EEETTEEEEECCEEESSCCSCCS
T ss_pred CCEEEEECC-CHHHHHHHHHHh-cCC-----ceEEE----ECCHHHHHHHHhCCce-EecCCCeecccccccccccCCCC
Confidence 379999995 999999999998 653 35542 3444443322110 00 00000000110011134678999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCc
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTR 249 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~ 249 (337)
+||++. |+. -+.++.+.|+.. .++. ||.+.|-++..- .+.+. +|. +++++.+.
T Consensus 70 ~vilav----K~~------------~~~~~l~~l~~~-~~~~-ivs~~nGi~~~e-~l~~~---~~~~~vl~g~~~ 123 (307)
T 3ego_A 70 LLVVTV----KQH------------QLQSVFSSLERI-GKTN-ILFLQNGMGHIH-DLKDW---HVGHSIYVGIVE 123 (307)
T ss_dssp EEEECC----CGG------------GHHHHHHHTTSS-CCCE-EEECCSSSHHHH-HHHTC---CCSCEEEEEEEC
T ss_pred EEEEEe----CHH------------HHHHHHHHhhcC-CCCe-EEEecCCccHHH-HHHHh---CCCCcEEEEEEe
Confidence 999985 221 134455666665 5677 888999887543 23332 344 56654443
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00042 Score=65.59 Aligned_cols=108 Identities=9% Similarity=0.079 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-C---c---
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N---P--- 166 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~---~--- 166 (337)
+++||.|+||+|++|++++..|+.. +. .|.. + +++.+.+.. +.+. .++++.. | +
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-----~V~~--~--~r~~~~~~~----~~~~-----~~v~~~~~Dl~~d~~~ 84 (372)
T 3slg_A 23 KAKKVLILGVNGFIGHHLSKRILETTDW-----EVFG--M--DMQTDRLGD----LVKH-----ERMHFFEGDITINKEW 84 (372)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHSSC-----EEEE--E--ESCCTTTGG----GGGS-----TTEEEEECCTTTCHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCC-----EEEE--E--eCChhhhhh----hccC-----CCeEEEeCccCCCHHH
Confidence 3579999999999999999999876 53 2433 2 233222221 1110 1222211 1 1
Q ss_pred -ccccCCCcEEEEecccCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 -YELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 -~eal~dADvVIitag~prk~g--~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.++++++|+||.+++...... .+..+.+..|+.-...+.+.+.+. . ..+|.+|-
T Consensus 85 ~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~--~~~v~~SS 141 (372)
T 3slg_A 85 VEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G--KHLVFPST 141 (372)
T ss_dssp HHHHHHHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHH-T--CEEEEECC
T ss_pred HHHHhccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHh-C--CcEEEeCc
Confidence 235678999999887542111 122345667777677788888876 3 46777764
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0024 Score=60.11 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=46.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|+||++|| .|.||+.+|..|+..+. ++.. + |++.++++.. .+. ..+...+..++.+++|+
T Consensus 3 M~kIgfIG-lG~MG~~mA~~L~~~G~-----~v~v--~--dr~~~~~~~l----~~~------Ga~~a~s~~e~~~~~dv 62 (300)
T 3obb_A 3 MKQIAFIG-LGHMGAPMATNLLKAGY-----LLNV--F--DLVQSAVDGL----VAA------GASAARSARDAVQGADV 62 (300)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE--E--CSSHHHHHHH----HHT------TCEECSSHHHHHTTCSE
T ss_pred cCEEEEee-ehHHHHHHHHHHHhCCC-----eEEE--E--cCCHHHHHHH----HHc------CCEEcCCHHHHHhcCCc
Confidence 67999999 69999999999998876 2443 3 5566665543 221 12333456788899999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
||.+-
T Consensus 63 v~~~l 67 (300)
T 3obb_A 63 VISML 67 (300)
T ss_dssp EEECC
T ss_pred eeecC
Confidence 98863
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0016 Score=62.16 Aligned_cols=109 Identities=14% Similarity=0.078 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--cC---cccc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--IN---PYEL 169 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t~---~~ea 169 (337)
+|+||.|+||+|++|++++..|+..+. .|.+ ++ ++...... +... . ..+... ++ ..++
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~~--r~~~~~~~----~~~~--~--v~~~~~Dl~d~~~~~~~ 90 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGH-----YVIA--SD--WKKNEHMT----EDMF--C--DEFHLVDLRVMENCLKV 90 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EE--SSCCSSSC----GGGT--C--SEEEECCTTSHHHHHHH
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCC-----eEEE--EE--CCCccchh----hccC--C--ceEEECCCCCHHHHHHH
Confidence 467999999999999999999998763 2433 22 22111110 0000 0 011111 01 1355
Q ss_pred cCCCcEEEEecccCCCC---CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 170 FEDAEWALLIGAKPRGP---GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 170 l~dADvVIitag~prk~---g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++++|+||.+++..... ..+..+.+..|+.-...+.+.+.+. ... .||++|
T Consensus 91 ~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~~~-~~V~~S 144 (379)
T 2c5a_A 91 TEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARIN-GIK-RFFYAS 144 (379)
T ss_dssp HTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCS-EEEEEE
T ss_pred hCCCCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEEe
Confidence 78999999988754211 1234456778888888888888774 333 566655
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0011 Score=61.79 Aligned_cols=107 Identities=13% Similarity=0.104 Sum_probs=61.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--c----cc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P----YE 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~----~e 168 (337)
.|+|.|+||+|.||++++..|+..+. .|.+ ++ ++.........++ .++.. ..| + .+
T Consensus 20 ~~~vlVTGasG~iG~~l~~~L~~~g~-----~V~~--~~--r~~~~~~~~~~~l--------~~v~~~~~Dl~d~~~~~~ 82 (330)
T 2pzm_A 20 HMRILITGGAGCLGSNLIEHWLPQGH-----EILV--ID--NFATGKREVLPPV--------AGLSVIEGSVTDAGLLER 82 (330)
T ss_dssp CCEEEEETTTSHHHHHHHHHHGGGTC-----EEEE--EE--CCSSSCGGGSCSC--------TTEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE--EE--CCCccchhhhhcc--------CCceEEEeeCCCHHHHHH
Confidence 46999999999999999999988763 2433 22 2111111000001 12221 111 1 23
Q ss_pred ccC--CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 169 LFE--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 169 al~--dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+++ +.|+||.++|.......+..+ +..|+.-...+.+.+.+. .. ..||++|
T Consensus 83 ~~~~~~~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~-~~-~~iV~~S 135 (330)
T 2pzm_A 83 AFDSFKPTHVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKA-GV-KRLLNFQ 135 (330)
T ss_dssp HHHHHCCSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHH-TC-SEEEEEE
T ss_pred HHhhcCCCEEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHc-CC-CEEEEec
Confidence 456 899999998754321122223 677877778888887765 33 3566665
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00049 Score=64.29 Aligned_cols=112 Identities=14% Similarity=0.099 Sum_probs=63.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHc--CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC-----
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAG--EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN----- 165 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~--~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~----- 165 (337)
+.|+||.|+||+|+||++++..|+.. +. .|.. ++........+ ...++.+ .++.. ..|
T Consensus 2 s~m~~vlVTGatG~iG~~l~~~L~~~~~g~-----~V~~--~~r~~~~~~~~-~~~~~~~------~~~~~~~~Dl~d~~ 67 (348)
T 1oc2_A 2 SQFKNIIVTGGAGFIGSNFVHYVYNNHPDV-----HVTV--LDKLTYAGNKA-NLEAILG------DRVELVVGDIADAE 67 (348)
T ss_dssp -CCSEEEEETTTSHHHHHHHHHHHHHCTTC-----EEEE--EECCCTTCCGG-GTGGGCS------SSEEEEECCTTCHH
T ss_pred CcCcEEEEeCCccHHHHHHHHHHHHhCCCC-----EEEE--EeCCCCCCChh-HHhhhcc------CCeEEEECCCCCHH
Confidence 34679999999999999999999886 32 2432 22211100111 0011110 12221 111
Q ss_pred -cccccCCCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 166 -PYELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 166 -~~eal~dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
..++++++|+||.++|..... ..+..+.+..|+.-...+.+.+.+. . +.||++|
T Consensus 68 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~--~~~v~~S 124 (348)
T 1oc2_A 68 LVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY-D--IRFHHVS 124 (348)
T ss_dssp HHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH-T--CEEEEEE
T ss_pred HHHHHhhcCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHh-C--CeEEEec
Confidence 125678899999998754210 0122345677888888888888775 2 3666665
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0036 Score=59.68 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=53.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.+||+|||+ |.+|.+++..|...+. .|.+ + +++.+.....+.+ . . +... +..+++++||+
T Consensus 16 ~~~I~IIG~-G~mG~alA~~L~~~G~-----~V~~--~--~~~~~~~~~~a~~----~-G----~~~~-~~~e~~~~aDv 75 (338)
T 1np3_A 16 GKKVAIIGY-GSQGHAHACNLKDSGV-----DVTV--G--LRSGSATVAKAEA----H-G----LKVA-DVKTAVAAADV 75 (338)
T ss_dssp TSCEEEECC-SHHHHHHHHHHHHTTC-----CEEE--E--CCTTCHHHHHHHH----T-T----CEEE-CHHHHHHTCSE
T ss_pred CCEEEEECc-hHHHHHHHHHHHHCcC-----EEEE--E--ECChHHHHHHHHH----C-C----CEEc-cHHHHHhcCCE
Confidence 468999995 9999999999988774 2544 2 3332221112111 1 1 2233 45578899999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHH-HHHhhcCCCeEEEEe
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGK-ALNAVASRNVKVIVV 221 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~-~I~~~a~p~aivIvv 221 (337)
||++.. .....++.+ .|..+..++++|+.+
T Consensus 76 Vilavp----------------~~~~~~v~~~~i~~~l~~~~ivi~~ 106 (338)
T 1np3_A 76 VMILTP----------------DEFQGRLYKEEIEPNLKKGATLAFA 106 (338)
T ss_dssp EEECSC----------------HHHHHHHHHHHTGGGCCTTCEEEES
T ss_pred EEEeCC----------------cHHHHHHHHHHHHhhCCCCCEEEEc
Confidence 999752 112244554 565554567665544
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00094 Score=62.07 Aligned_cols=113 Identities=10% Similarity=0.060 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--c----cc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P----YE 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~----~e 168 (337)
|+||.|+||+|+||++++..|+..+. .|.+ ++..... .......++.+. . ++.. ..| + .+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~--~~r~~~~-~~~~~~~~l~~~--~---~~~~~~~Dl~d~~~~~~ 67 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGI-----DLIV--FDNLSRK-GATDNLHWLSSL--G---NFEFVHGDIRNKNDVTR 67 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EECCCST-THHHHHHHHHTT--C---CCEEEECCTTCHHHHHH
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCC-----EEEE--EeCCCcc-CchhhhhhhccC--C---ceEEEEcCCCCHHHHHH
Confidence 46899999999999999999998764 2433 2221100 111111122221 1 1111 111 1 23
Q ss_pred ccCC--CcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 169 LFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 169 al~d--ADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++++ .|+||.++|..... ..+..+.+..|+.-...+.+.+.+. ...+.||++|
T Consensus 68 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~~~~iv~~S 124 (347)
T 1orr_A 68 LITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQY-NSNCNIIYSS 124 (347)
T ss_dssp HHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEE
T ss_pred HHhccCCCEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEec
Confidence 4566 99999998754210 0122345778888888888888876 3444666666
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0009 Score=60.88 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=61.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC--C
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--D 172 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~--d 172 (337)
+++||.|+||+|++|++++..|...+.... .....+ +....|+.|.. ...++++ +
T Consensus 5 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~---~~~~~~---------~~~~~D~~d~~-----------~~~~~~~~~~ 61 (319)
T 4b8w_A 5 QSMRILVTGGSGLVGKAIQKVVADGAGLPG---EDWVFV---------SSKDADLTDTA-----------QTRALFEKVQ 61 (319)
T ss_dssp CCCEEEEETCSSHHHHHHHHHHHTTTCCTT---CEEEEC---------CTTTCCTTSHH-----------HHHHHHHHSC
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhcCCccc---cccccc---------CceecccCCHH-----------HHHHHHhhcC
Confidence 467999999999999999999998775211 111110 00112222211 0112333 4
Q ss_pred CcEEEEecccCCC---CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 173 AEWALLIGAKPRG---PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 173 ADvVIitag~prk---~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+|+||.+++.... ......+.+..|+.-...+.+.+.+. ... .+|.+|
T Consensus 62 ~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~-~~~-~~v~~S 112 (319)
T 4b8w_A 62 PTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEV-GAR-KVVSCL 112 (319)
T ss_dssp CSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCS-EEEEEC
T ss_pred CCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHc-CCC-eEEEEc
Confidence 8999998875321 11233456788888888888888875 333 566655
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0023 Score=60.01 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=41.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
.||++|| .|.||..+|..|+..|. .|.. + |++.++.+. +.+. ......+..+.++++|+|
T Consensus 6 ~kIgfIG-LG~MG~~mA~~L~~~G~-----~V~v--~--dr~~~~~~~----l~~~------G~~~~~s~~e~~~~~dvv 65 (297)
T 4gbj_A 6 EKIAFLG-LGNLGTPIAEILLEAGY-----ELVV--W--NRTASKAEP----LTKL------GATVVENAIDAITPGGIV 65 (297)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE--C---------CT----TTTT------TCEECSSGGGGCCTTCEE
T ss_pred CcEEEEe-cHHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHH----HHHc------CCeEeCCHHHHHhcCCce
Confidence 4899999 69999999999999886 2433 3 455555432 2211 234445667889999999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
|++-
T Consensus 66 i~~l 69 (297)
T 4gbj_A 66 FSVL 69 (297)
T ss_dssp EECC
T ss_pred eeec
Confidence 9874
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00093 Score=60.54 Aligned_cols=67 Identities=16% Similarity=0.277 Sum_probs=43.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+++||+||| +|.+|..++..|...+. .|.+ + |++.++++..+.++ . +...++..+.++++|
T Consensus 2 ~~m~i~iiG-~G~mG~~~a~~l~~~g~-----~v~~--~--~~~~~~~~~~~~~~-----g----~~~~~~~~~~~~~~D 62 (259)
T 2ahr_A 2 NAMKIGIIG-VGKMASAIIKGLKQTPH-----ELII--S--GSSLERSKEIAEQL-----A----LPYAMSHQDLIDQVD 62 (259)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHTTSSC-----EEEE--E--CSSHHHHHHHHHHH-----T----CCBCSSHHHHHHTCS
T ss_pred CccEEEEEC-CCHHHHHHHHHHHhCCC-----eEEE--E--CCCHHHHHHHHHHc-----C----CEeeCCHHHHHhcCC
Confidence 457999999 59999999999876652 2443 3 45555554332211 1 122334456788999
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+||++.
T Consensus 63 ~Vi~~v 68 (259)
T 2ahr_A 63 LVILGI 68 (259)
T ss_dssp EEEECS
T ss_pred EEEEEe
Confidence 999985
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0023 Score=58.85 Aligned_cols=64 Identities=16% Similarity=0.243 Sum_probs=43.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+|||+ |.||..++..|...+. .|.+ + |++.++++.. .+. .+.+.++..+.++++|+|
T Consensus 1 m~i~iiG~-G~mG~~~a~~l~~~g~-----~V~~--~--~~~~~~~~~~----~~~------g~~~~~~~~~~~~~~Dvv 60 (296)
T 2gf2_A 1 MPVGFIGL-GNMGNPMAKNLMKHGY-----PLII--Y--DVFPDACKEF----QDA------GEQVVSSPADVAEKADRI 60 (296)
T ss_dssp CCEEEECC-STTHHHHHHHHHHTTC-----CEEE--E--CSSTHHHHHH----HTT------TCEECSSHHHHHHHCSEE
T ss_pred CeEEEEec-cHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHH----HHc------CCeecCCHHHHHhcCCEE
Confidence 48999995 9999999999988764 2544 3 4455554432 211 234444555778899999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
|++.
T Consensus 61 i~~v 64 (296)
T 2gf2_A 61 ITML 64 (296)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9875
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0043 Score=58.15 Aligned_cols=118 Identities=14% Similarity=0.009 Sum_probs=65.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC------cc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------PY 167 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~------~~ 167 (337)
+++||.|+||+|.+|++++..|+..+. .|.+.....+...+.++....++.... ..++... .| ..
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~ 97 (352)
T 1sb8_A 26 QPKVWLITGVAGFIGSNLLETLLKLDQ-----KVVGLDNFATGHQRNLDEVRSLVSEKQ---WSNFKFIQGDIRNLDDCN 97 (352)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCSSCCHHHHHHHHHHSCHHH---HTTEEEEECCTTSHHHHH
T ss_pred cCCeEEEECCCcHHHHHHHHHHHHCCC-----EEEEEeCCCccchhhHHHHhhhccccc---CCceEEEECCCCCHHHHH
Confidence 467999999999999999999998764 243321111111122222211111000 0122221 11 12
Q ss_pred cccCCCcEEEEecccCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 168 ELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 168 eal~dADvVIitag~prk~g--~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++++++|+||.++|....+. .+..+.+..|+.-...+.+.+.+. ... .||++|
T Consensus 98 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~-~~v~~S 152 (352)
T 1sb8_A 98 NACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-KVQ-SFTYAA 152 (352)
T ss_dssp HHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCS-EEEEEE
T ss_pred HHhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEec
Confidence 45779999999987532110 123345677888788888888774 333 566665
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0015 Score=57.61 Aligned_cols=110 Identities=20% Similarity=0.186 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--cC---cccc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--IN---PYEL 169 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t~---~~ea 169 (337)
++++|.|+||+|.+|++++..|+..+. + ..|.+ + +++.++++. +.. . ..+... ++ ..+.
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~-g--~~V~~--~--~r~~~~~~~----~~~---~--~~~~~~D~~d~~~~~~~ 66 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSD-K--FVAKG--L--VRSAQGKEK----IGG---E--ADVFIGDITDADSINPA 66 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTT-T--CEEEE--E--ESCHHHHHH----TTC---C--TTEEECCTTSHHHHHHH
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCC-C--cEEEE--E--EcCCCchhh----cCC---C--eeEEEecCCCHHHHHHH
Confidence 457899999999999999999998731 0 02433 2 334333321 110 0 011111 11 2355
Q ss_pred cCCCcEEEEecccCCC------------CCCc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 170 FEDAEWALLIGAKPRG------------PGME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 170 l~dADvVIitag~prk------------~g~~---R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+++.|+||.++|.... +... -.+....|..-...+.+.+.+. ... .||++|
T Consensus 67 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~-~iv~~S 132 (253)
T 1xq6_A 67 FQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-GVK-HIVVVG 132 (253)
T ss_dssp HTTCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-TCS-EEEEEE
T ss_pred HcCCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHc-CCC-EEEEEc
Confidence 7889999998874321 1110 0124577777778888888775 333 566665
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0015 Score=61.99 Aligned_cols=112 Identities=15% Similarity=0.103 Sum_probs=68.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC------c
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------P 166 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~------~ 166 (337)
+.++|.|+||+|.+|++++..|+.. +.. .|.+ + ++++.++.....++.+ .++... .| .
T Consensus 20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~----~V~~--~--~r~~~~~~~~~~~~~~------~~v~~~~~Dl~d~~~l 85 (344)
T 2gn4_A 20 DNQTILITGGTGSFGKCFVRKVLDTTNAK----KIIV--Y--SRDELKQSEMAMEFND------PRMRFFIGDVRDLERL 85 (344)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCCCS----EEEE--E--ESCHHHHHHHHHHHCC------TTEEEEECCTTCHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhCCCC----EEEE--E--ECChhhHHHHHHHhcC------CCEEEEECCCCCHHHH
Confidence 3479999999999999999999887 531 2433 2 3444444333222321 122211 11 1
Q ss_pred ccccCCCcEEEEecccCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 167 YELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 167 ~eal~dADvVIitag~prk~g--~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.+++++.|+||.++|....+. ....+.+..|+.-...+.+...+. ... .||.+|
T Consensus 86 ~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~-~v~-~~V~~S 141 (344)
T 2gn4_A 86 NYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKN-AIS-QVIALS 141 (344)
T ss_dssp HHHTTTCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT-TCS-EEEEEC
T ss_pred HHHHhcCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhC-CCC-EEEEec
Confidence 256789999999987643221 122356778888788888888775 333 566665
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0012 Score=62.58 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=55.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||.|+||+|++|++++..|+..+.. .+..+|.+.+.+.+ .+.++++|+|
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~------~v~~~d~~~d~~~l------------------------~~~~~~~d~V 50 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDH------HIFEVHRQTKEEEL------------------------ESALLKADFI 50 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCC------EEEECCTTCCHHHH------------------------HHHHHHCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC------EEEEECCCCCHHHH------------------------HHHhccCCEE
Confidence 58999999999999999999987752 23333331111111 1234468888
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
|.+++..+. ....+....|+...+.+.+.+++. .....+|.+|
T Consensus 51 ih~a~~~~~--~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~S 93 (369)
T 3st7_A 51 VHLAGVNRP--EHDKEFSLGNVSYLDHVLDILTRN-TKKPAILLSS 93 (369)
T ss_dssp EECCCSBCT--TCSTTCSSSCCBHHHHHHHHHTTC-SSCCEEEEEE
T ss_pred EECCcCCCC--CCHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEeC
Confidence 888775432 122233455666666677776664 3333555555
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0063 Score=58.90 Aligned_cols=117 Identities=16% Similarity=0.138 Sum_probs=63.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch-hhHHHhHHHhHhhhc-----cCCcccEEEec-C--
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSL-----FPLLREVKIGI-N-- 165 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~-~~~l~g~a~DL~d~~-----~~~~~~v~i~t-~-- 165 (337)
++++|.|+||+|.+|++++..|...+. .|.+ ++.... .+.++.....+.... .....++.+.. |
T Consensus 68 ~~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~--~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~ 140 (427)
T 4f6c_A 68 PLGNTLLTGATGFLGAYLIEALQGYSH-----RIYC--FIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFE 140 (427)
T ss_dssp CCEEEEEECTTSHHHHHHHHHHTTTEE-----EEEE--EEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC-
T ss_pred CCCEEEEecCCcHHHHHHHHHHHcCCC-----EEEE--EECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCC
Confidence 457999999999999999999965442 2332 222211 112222222222110 00001222211 1
Q ss_pred ---cccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 166 ---PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 166 ---~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
..+++.++|+||.+++.... ..+..+....|+.-...+++.+.+ ....+|++|
T Consensus 141 d~~~l~~~~~~d~Vih~A~~~~~-~~~~~~~~~~Nv~g~~~l~~aa~~---~~~~~v~~S 196 (427)
T 4f6c_A 141 CMDDVVLPENMDTIIHAGARTDH-FGDDDEFEKVNVQGTVDVIRLAQQ---HHARLIYVS 196 (427)
T ss_dssp --CCCCCSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH---TTCEEEEEE
T ss_pred CcccCCCcCCCCEEEECCcccCC-CCCHHHHHHHHHHHHHHHHHHHHh---cCCcEEEEC
Confidence 11257799999999876432 233455678888888888888776 234566665
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0011 Score=60.24 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=63.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHh-----HHHhHhhhccCCcccEEEecCccccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG-----VAMELEDSLFPLLREVKIGINPYELF 170 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g-----~a~DL~d~~~~~~~~v~i~t~~~eal 170 (337)
+++|.|+||+|.||++++..|+..+. .|.+ . +++..+..+ ...|+.|. ..-.+.+
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~Dl~d~-----------~~~~~~~ 62 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMAE-----ILRL--A--DLSPLDPAGPNEECVQCDLADA-----------NAVNAMV 62 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGEE-----EEEE--E--ESSCCCCCCTTEEEEECCTTCH-----------HHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC-----EEEE--E--ecCCccccCCCCEEEEcCCCCH-----------HHHHHHH
Confidence 45799999999999999999988664 2433 2 222222110 01111110 0123457
Q ss_pred CCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++.|+||..+|... .....+.+..|+.-...+.+.+.+. .. ..||++|
T Consensus 63 ~~~D~vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~-~~-~~iv~~S 110 (267)
T 3rft_A 63 AGCDGIVHLGGISV--EKPFEQILQGNIIGLYNLYEAARAH-GQ-PRIVFAS 110 (267)
T ss_dssp TTCSEEEECCSCCS--CCCHHHHHHHHTHHHHHHHHHHHHT-TC-CEEEEEE
T ss_pred cCCCEEEECCCCcC--cCCHHHHHHHHHHHHHHHHHHHHHc-CC-CEEEEEc
Confidence 78999999988632 1223456778888888888888775 33 3566655
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00074 Score=52.84 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=42.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--c---Ccccc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--I---NPYEL 169 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t---~~~ea 169 (337)
+++||.|+|| |.+|..++..|...+.. .+.+ .+++.++++... +. . ...... + +..+.
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~----~v~~----~~r~~~~~~~~~----~~--~--~~~~~~d~~~~~~~~~~ 66 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNY----SVTV----ADHDLAALAVLN----RM--G--VATKQVDAKDEAGLAKA 66 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSE----EEEE----EESCHHHHHHHH----TT--T--CEEEECCTTCHHHHHHH
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCc----eEEE----EeCCHHHHHHHH----hC--C--CcEEEecCCCHHHHHHH
Confidence 3569999997 99999999999987731 2433 244555554322 11 0 011111 1 12345
Q ss_pred cCCCcEEEEecc
Q 019713 170 FEDAEWALLIGA 181 (337)
Q Consensus 170 l~dADvVIitag 181 (337)
++++|+||.+++
T Consensus 67 ~~~~d~vi~~~~ 78 (118)
T 3ic5_A 67 LGGFDAVISAAP 78 (118)
T ss_dssp TTTCSEEEECSC
T ss_pred HcCCCEEEECCC
Confidence 789999999874
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00076 Score=62.78 Aligned_cols=100 Identities=13% Similarity=0.152 Sum_probs=60.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCccccc-CCCcE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-EDAEW 175 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal-~dADv 175 (337)
|||+|||| |.+|..++..|+..+. .|.+. +++.+.++ +.... .. ....+..+..+++ .++|+
T Consensus 3 mkI~iiGa-Ga~G~~~a~~L~~~g~-----~V~~~----~r~~~~~~-----~~~~~-g~-~~~~~~~~~~~~~~~~~D~ 65 (294)
T 3g17_A 3 LSVAIIGP-GAVGTTIAYELQQSLP-----HTTLI----GRHAKTIT-----YYTVP-HA-PAQDIVVKGYEDVTNTFDV 65 (294)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHHCT-----TCEEE----ESSCEEEE-----EESST-TS-CCEEEEEEEGGGCCSCEEE
T ss_pred cEEEEECC-CHHHHHHHHHHHHCCC-----eEEEE----EeccCcEE-----EEecC-Ce-eccceecCchHhcCCCCCE
Confidence 69999995 9999999999998774 25553 23322221 11111 11 1123333445555 89999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHH
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t 229 (337)
||++. |+. -+.++.+.|+.+..++..||.+.|-++...
T Consensus 66 vilav----k~~------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~ 103 (294)
T 3g17_A 66 IIIAV----KTH------------QLDAVIPHLTYLAHEDTLIILAQNGYGQLE 103 (294)
T ss_dssp EEECS----CGG------------GHHHHGGGHHHHEEEEEEEEECCSSCCCGG
T ss_pred EEEeC----Ccc------------CHHHHHHHHHHhhCCCCEEEEeccCcccHh
Confidence 99975 221 133444555555457788899999876643
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.003 Score=58.13 Aligned_cols=103 Identities=15% Similarity=0.097 Sum_probs=50.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC--CCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~--dAD 174 (337)
+||.|+||+|.+|++++..|+..+. .|.. ++ ++.+.-.-...|+.|. ....++++ +.|
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~~--r~~~~~~~~~~Dl~d~-----------~~~~~~~~~~~~d 62 (315)
T 2ydy_A 3 RRVLVTGATGLLGRAVHKEFQQNNW-----HAVG--CG--FRRARPKFEQVNLLDS-----------NAVHHIIHDFQPH 62 (315)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-----EEEE--EC-------------------------------CHHHHHHHCCS
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCC-----eEEE--Ec--cCCCCCCeEEecCCCH-----------HHHHHHHHhhCCC
Confidence 6899999999999999999988763 2433 22 2211100111222221 11224455 489
Q ss_pred EEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 175 vVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+||.++|..... ..+..+.+..|+.-...+.+.+.+. . +.+|++|
T Consensus 63 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~--~~~v~~S 109 (315)
T 2ydy_A 63 VIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAV-G--AFLIYIS 109 (315)
T ss_dssp EEEECC-------------------CHHHHHHHHHHHHH-T--CEEEEEE
T ss_pred EEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEc
Confidence 999988754211 1233445677877778888887775 2 3666665
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.002 Score=62.29 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=22.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
|.+++||+||||+|.+|..+...|....
T Consensus 4 M~~~~kVaIvGATGyvG~eLlrlL~~hP 31 (359)
T 4dpl_A 4 MRRTLKAAILGATGLVGIEYVRMLSNHP 31 (359)
T ss_dssp --CCEEEEETTTTSTTHHHHHHHHTTCS
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCC
Confidence 3456899999999999999999776644
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.002 Score=62.29 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=22.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
|.+++||+||||+|.+|..+...|....
T Consensus 4 M~~~~kVaIvGATGyvG~eLlrlL~~hP 31 (359)
T 4dpk_A 4 MRRTLKAAILGATGLVGIEYVRMLSNHP 31 (359)
T ss_dssp --CCEEEEETTTTSTTHHHHHHHHTTCS
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCC
Confidence 3456899999999999999999776644
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.001 Score=60.44 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=60.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC--CCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~--dAD 174 (337)
|||.|+||+|++|++++..|...+. .|.. + ++. ..|+.|.. ...++++ ++|
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~-------~~D~~d~~-----------~~~~~~~~~~~d 58 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEY-----DIYP--F--DKK-------LLDITNIS-----------QVQQVVQEIRPH 58 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTE-----EEEE--E--CTT-------TSCTTCHH-----------HHHHHHHHHCCS
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCC-----EEEE--e--ccc-------ccCCCCHH-----------HHHHHHHhcCCC
Confidence 4899999999999999999887653 2332 2 221 12332211 0122333 689
Q ss_pred EEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 175 vVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+||.+++..... ..+..+....|+.-...+.+.+.+. . +++|.+|
T Consensus 59 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~--~~~v~~S 105 (287)
T 3sc6_A 59 IIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLV-G--AKLVYIS 105 (287)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHH-T--CEEEEEE
T ss_pred EEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEc
Confidence 999988754311 1234456778888888888888876 2 3566665
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0053 Score=59.60 Aligned_cols=72 Identities=24% Similarity=0.386 Sum_probs=44.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
++||+||||+|.+|..+...|...+. . .+.|.++...++ .|....+.. ....+..-+.++++++|+
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~-p---~~el~~~as~~s----aG~~~~~~~------~~~~~~~~~~~~~~~~Dv 67 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTL-P---IDKIRYLASARS----AGKSLKFKD------QDITIEETTETAFEGVDI 67 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCC-C---EEEEEEEECTTT----TTCEEEETT------EEEEEEECCTTTTTTCSE
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCC-C---cEEEEEEEcccc----CCCcceecC------CCceEeeCCHHHhcCCCE
Confidence 46999999999999999998877643 1 245555443322 222221111 133343333467899999
Q ss_pred EEEecc
Q 019713 176 ALLIGA 181 (337)
Q Consensus 176 VIitag 181 (337)
|+++.|
T Consensus 68 vf~a~~ 73 (366)
T 3pwk_A 68 ALFSAG 73 (366)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 998754
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0015 Score=60.56 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-Cc----cccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NP----YELF 170 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~~----~eal 170 (337)
|+||.|+||+|++|++++..|+..+. .|.. ++. +..... ..+.. ...+...+ .+ .+++
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~-----~V~~--~~r--~~~~~~---~~~~~-----~~~~~~~D~~~~~~~~~~~ 63 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGL-----SVVV--VDN--LQTGHE---DAITE-----GAKFYNGDLRDKAFLRDVF 63 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EEC--CSSCCG---GGSCT-----TSEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-----EEEE--EeC--CCcCch---hhcCC-----CcEEEECCCCCHHHHHHHH
Confidence 57999999999999999999998763 2433 222 111110 00110 00111110 11 2345
Q ss_pred C--CCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 171 E--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 171 ~--dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+ ++|+||.+++..... ..+..+.+..|+.-...+.+.+.+. .. ..+|.+|-
T Consensus 64 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~~v~~Ss 118 (330)
T 2c20_A 64 TQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEF-KV-DKFIFSST 118 (330)
T ss_dssp HHSCEEEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT-TC-CEEEEECC
T ss_pred hhcCCCEEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHc-CC-CEEEEeCC
Confidence 5 899999988754211 0123345677888888888888774 32 35666663
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.03 Score=50.87 Aligned_cols=116 Identities=13% Similarity=0.092 Sum_probs=65.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cccc----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL---- 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~ea---- 169 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ .+++.++++....++.... ...++.. ..| +.+.
T Consensus 33 k~vlVTGasggIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~ 101 (279)
T 1xg5_A 33 RLALVTGASGGIGAAVARALVQQGL-----KVVG----CARTVGNIEELAAECKSAG--YPGTLIPYRCDLSNEEDILSM 101 (279)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT--CSSEEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EECChHHHHHHHHHHHhcC--CCceEEEEEecCCCHHHHHHH
Confidence 5899999999999999999998774 2443 2445555554444444321 1112222 111 1221
Q ss_pred -------cCCCcEEEEecccCCCCC---Cch---hhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 -------FEDAEWALLIGAKPRGPG---MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 -------l~dADvVIitag~prk~g---~~R---~dll~~N~~I----~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+.|+||..+|...... .+. ...+..|+.- .+.+.+.+.+...+++.||+++-
T Consensus 102 ~~~~~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS 172 (279)
T 1xg5_A 102 FSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININS 172 (279)
T ss_dssp HHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECC
T ss_pred HHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence 237899999888543211 111 2345555444 66677777764212357777764
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0046 Score=58.04 Aligned_cols=110 Identities=16% Similarity=0.083 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec--CcccccC--
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFE-- 171 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t--~~~eal~-- 171 (337)
.+||.|+||+|+||++++..|+..+.. .|.+ ++.......+. ++.+. . ....+.. ...+.++
T Consensus 46 ~~~vlVtGatG~iG~~l~~~L~~~g~~----~V~~--~~r~~~~~~~~----~~~~~--~--~~~d~~~~~~~~~~~~~~ 111 (357)
T 2x6t_A 46 GRMIIVTGGAGFIGSNIVKALNDKGIT----DILV--VDNLKDGTKFV----NLVDL--N--IADYMDKEDFLIQIMAGE 111 (357)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTTCC----CEEE--EECCSSGGGGG----GTTTS--C--CSEEEEHHHHHHHHHTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCc----EEEE--EecCCCcchhh----cccCc--e--EeeecCcHHHHHHHHhhc
Confidence 368999999999999999999987631 2433 22211111111 11111 0 1111211 0112333
Q ss_pred ---CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 172 ---DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 172 ---dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++|+||.+++.......+..+.+..|+.-...+.+.+.+. .. .||.+|
T Consensus 112 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~-~~--r~V~~S 162 (357)
T 2x6t_A 112 EFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EI--PFLYAS 162 (357)
T ss_dssp CCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH-TC--CEEEEE
T ss_pred ccCCCCEEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHc-CC--eEEEEc
Confidence 6999999987643322344556788888888888888875 33 566655
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0013 Score=60.99 Aligned_cols=114 Identities=12% Similarity=-0.043 Sum_probs=62.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--cc----
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY---- 167 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~---- 167 (337)
+++||.|+||+|++|++++..|+..+. .|.. ++.+....... ...++.. ..++.+. .| +.
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~--~~r~~~~~~~~-~~~~~~~-----~~~~~~~~~Dl~d~~~~~ 79 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGY-----RVHG--LVARRSSDTRW-RLRELGI-----EGDIQYEDGDMADACSVQ 79 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EECCCSSCCCH-HHHHTTC-----GGGEEEEECCTTCHHHHH
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCCC-----eEEE--EeCCCcccccc-chhhccc-----cCceEEEECCCCCHHHHH
Confidence 457999999999999999999998763 2433 22221110000 0011110 0122221 11 11
Q ss_pred cccCC--CcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 168 ELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 168 eal~d--ADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+.+++ .|+||.++|..... ..+..+.+..|+.-...+.+.+.+. .....||.+|
T Consensus 80 ~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~S 137 (335)
T 1rpn_A 80 RAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQF-SPETRFYQAS 137 (335)
T ss_dssp HHHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTSEEEEEE
T ss_pred HHHHHcCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEe
Confidence 33444 59999988754311 1233456777888788888888775 3224666665
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.005 Score=56.41 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=61.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec------Cccccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI------NPYELF 170 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t------~~~eal 170 (337)
|||.|+||+|++|++++..|+..+. .|.. ++ ++.+..... .+ ..+.... +..+++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~~--r~~~~~~~~----~~------~~~~~~~~Dl~d~~~~~~~ 61 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGY-----EVVV--VD--NLSSGRREF----VN------PSAELHVRDLKDYSWGAGI 61 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EC--CCSSCCGGG----SC------TTSEEECCCTTSTTTTTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-----EEEE--Ee--CCCCCchhh----cC------CCceEEECccccHHHHhhc
Confidence 5899999999999999999998764 2433 22 221111100 00 0111110 122445
Q ss_pred CCCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 171 EDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 171 ~dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++ |+||.+++.+... ..+....+..|+.-...+.+.+.+. ... .||++|
T Consensus 62 ~~-d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~-~iv~~S 112 (312)
T 3ko8_A 62 KG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQT-GVR-TVVFAS 112 (312)
T ss_dssp CC-SEEEECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHH-TCC-EEEEEE
T ss_pred CC-CEEEECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEeC
Confidence 55 9999998854311 1233455778888888888888775 333 566655
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0036 Score=56.92 Aligned_cols=99 Identities=16% Similarity=0.121 Sum_probs=56.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--cC---ccccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--IN---PYELF 170 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t~---~~eal 170 (337)
|||.|+||+|++|++++..|... +. .|... .++.+++.. +.+. ...+... ++ ..+++
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~-----~V~~~----~R~~~~~~~----~~~~----~v~~~~~D~~d~~~l~~~~ 63 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHID-----HFHIG----VRNVEKVPD----DWRG----KVSVRQLDYFNQESMVEAF 63 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCT-----TEEEE----ESSGGGSCG----GGBT----TBEEEECCTTCHHHHHHHT
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCC-----cEEEE----ECCHHHHHH----hhhC----CCEEEEcCCCCHHHHHHHH
Confidence 58999999999999999998875 43 24432 233333221 1110 0111111 11 23578
Q ss_pred CCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+++|+||.+++.... ...|....+.+.+.+++. ... .||.+|
T Consensus 64 ~~~d~vi~~a~~~~~--------~~~~~~~~~~l~~aa~~~-gv~-~iv~~S 105 (289)
T 3e48_A 64 KGMDTVVFIPSIIHP--------SFKRIPEVENLVYAAKQS-GVA-HIIFIG 105 (289)
T ss_dssp TTCSEEEECCCCCCS--------HHHHHHHHHHHHHHHHHT-TCC-EEEEEE
T ss_pred hCCCEEEEeCCCCcc--------chhhHHHHHHHHHHHHHc-CCC-EEEEEc
Confidence 899999998864321 133566667777777764 322 455544
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0021 Score=60.00 Aligned_cols=108 Identities=13% Similarity=0.062 Sum_probs=60.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--c----c
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P----Y 167 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~----~ 167 (337)
+++||.|+||+|.+|++++..|+..+. .|.+ ++ ++...... .+.+ + .++.+ ..| + .
T Consensus 20 ~~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~--~~--r~~~~~~~---~l~~----~-~~~~~~~~Dl~d~~~~~ 82 (333)
T 2q1w_A 20 HMKKVFITGICGQIGSHIAELLLERGD-----KVVG--ID--NFATGRRE---HLKD----H-PNLTFVEGSIADHALVN 82 (333)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EE--CCSSCCGG---GSCC----C-TTEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-----EEEE--EE--CCCccchh---hHhh----c-CCceEEEEeCCCHHHHH
Confidence 467999999999999999999998763 2433 22 22111000 0110 0 11221 111 1 2
Q ss_pred cccCC--CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 168 ELFED--AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 168 eal~d--ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+++++ +|+||.++|.......+..+ +..|+.-...+.+.+.+. .. ..||++|
T Consensus 83 ~~~~~~~~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~-~~-~~iV~~S 136 (333)
T 2q1w_A 83 QLIGDLQPDAVVHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKN-NV-GRFVYFQ 136 (333)
T ss_dssp HHHHHHCCSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHT-TC-SEEEEEE
T ss_pred HHHhccCCcEEEECceecCCCccCChH-HHHHHHHHHHHHHHHHHh-CC-CEEEEEC
Confidence 34556 99999988754322122222 677877777888877774 22 3566654
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0015 Score=60.26 Aligned_cols=106 Identities=15% Similarity=0.235 Sum_probs=61.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--c---
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P--- 166 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~--- 166 (337)
..++++|.|+||+|+||++++..|+..|. .|.+ + +++... +. + ++.. ..| +
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~-----~V~~--~--~r~~~~-~~----l---------~~~~~~~Dl~d~~~ 65 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQNV-----EVFG--T--SRNNEA-KL----P---------NVEMISLDIMDSQR 65 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCTTC-CC----T---------TEEEEECCTTCHHH
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCCC-----EEEE--E--ecCCcc-cc----c---------eeeEEECCCCCHHH
Confidence 34578999999999999999999998764 2433 2 222211 10 1 1111 111 1
Q ss_pred -ccccCC--CcEEEEecccCCC--CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 167 -YELFED--AEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 167 -~eal~d--ADvVIitag~prk--~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.+++++ .|+||.++|.... ...+..+.+..|+.-...+.+.+.+. .....||++|
T Consensus 66 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~S 125 (321)
T 2pk3_A 66 VKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDS-NLDCRILTIG 125 (321)
T ss_dssp HHHHHHHHCCSEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-TCCCEEEEEE
T ss_pred HHHHHHhcCCCEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEc
Confidence 133444 8999998875321 11233456778888888888888664 2344666665
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0031 Score=57.72 Aligned_cols=107 Identities=12% Similarity=0.019 Sum_probs=58.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--cC---ccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--IN---PYE 168 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t~---~~e 168 (337)
..+++|.|+||+|.+|++++..|+..+-. .|.. + .++.+.... .++.... ..+... ++ ..+
T Consensus 3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~----~V~~--~--~R~~~~~~~--~~l~~~~----~~~~~~D~~d~~~l~~ 68 (299)
T 2wm3_A 3 VDKKLVVVFGGTGAQGGSVARTLLEDGTF----KVRV--V--TRNPRKKAA--KELRLQG----AEVVQGDQDDQVIMEL 68 (299)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHHHCSS----EEEE--E--ESCTTSHHH--HHHHHTT----CEEEECCTTCHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhcCCc----eEEE--E--EcCCCCHHH--HHHHHCC----CEEEEecCCCHHHHHH
Confidence 34578999999999999999999876511 2433 2 223222211 1122111 011111 11 235
Q ss_pred ccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 169 al~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+++++|+||.+++..... ....|....+.+.+.+.+. ... .||..|
T Consensus 69 ~~~~~d~vi~~a~~~~~~------~~~~~~~~~~~~~~aa~~~-gv~-~iv~~S 114 (299)
T 2wm3_A 69 ALNGAYATFIVTNYWESC------SQEQEVKQGKLLADLARRL-GLH-YVVYSG 114 (299)
T ss_dssp HHTTCSEEEECCCHHHHT------CHHHHHHHHHHHHHHHHHH-TCS-EEEECC
T ss_pred HHhcCCEEEEeCCCCccc------cchHHHHHHHHHHHHHHHc-CCC-EEEEEc
Confidence 688999999987632111 1234566667777777764 333 455544
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0022 Score=57.05 Aligned_cols=26 Identities=38% Similarity=0.608 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
.|++|.|+||+|.+|.+++..|+..+
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G 47 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQ 47 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCT
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCC
Confidence 35689999999999999999998876
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0091 Score=57.26 Aligned_cols=102 Identities=16% Similarity=0.177 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccC-Cc--ccEEEecC-ccccc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-LL--REVKIGIN-PYELF 170 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~-~~--~~v~i~t~-~~eal 170 (337)
.|+||+|+||+|.+|..+...|....- +.+..+..... ..-.|.. +.+.. | +. ....+..- +.+++
T Consensus 3 ~M~kv~IvGatG~vG~~l~~~L~~~p~------~el~~l~s~~~-~~saGk~--~~~~~-p~~~~~~~~~v~~~~~~~~~ 72 (337)
T 3dr3_A 3 AMLNTLIVGASGYAGAELVTYVNRHPH------MNITALTVSAQ-SNDAGKL--ISDLH-PQLKGIVELPLQPMSDISEF 72 (337)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHCTT------EEEEEEEEETT-CTTTTSB--HHHHC-GGGTTTCCCBEEEESSGGGT
T ss_pred CceEEEEECCCChHHHHHHHHHHhCCC------CcEEEEEecCc-hhhcCCc--hHHhC-ccccCccceeEeccCCHHHH
Confidence 468999999999999999998887543 33333322220 0011211 11111 1 10 12233221 34566
Q ss_pred -CCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 171 -EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 171 -~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
+++|+|+++.+ ...-+++++.+.+ .+++||-.|.+-
T Consensus 73 ~~~~Dvvf~a~p----------------~~~s~~~~~~~~~---~g~~vIDlSa~f 109 (337)
T 3dr3_A 73 SPGVDVVFLATA----------------HEVSHDLAPQFLE---AGCVVFDLSGAF 109 (337)
T ss_dssp CTTCSEEEECSC----------------HHHHHHHHHHHHH---TTCEEEECSSTT
T ss_pred hcCCCEEEECCC----------------hHHHHHHHHHHHH---CCCEEEEcCCcc
Confidence 89999998753 1334555655544 467888888763
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.014 Score=57.68 Aligned_cols=107 Identities=12% Similarity=0.120 Sum_probs=59.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccC----------CcccEEEecCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP----------LLREVKIGINP 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~----------~~~~v~i~t~~ 166 (337)
.|..||| +|.||..+|..|+..|. .|.. + |+++++.+.+...-.....+ ...++..+++
T Consensus 12 ~~~~ViG-lGyvGlp~A~~La~~G~-----~V~~--~--D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd- 80 (431)
T 3ojo_A 12 SKLTVVG-LGYIGLPTSIMFAKHGV-----DVLG--V--DINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTT- 80 (431)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESS-
T ss_pred CccEEEe-eCHHHHHHHHHHHHCCC-----EEEE--E--ECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCc-
Confidence 5899999 59999999999999875 2443 3 44555555432210000000 0124666654
Q ss_pred ccccCCCcEEEEecccCCCCCC-chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 167 YELFEDAEWALLIGAKPRGPGM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 167 ~eal~dADvVIitag~prk~g~-~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+++||+||++.+.|..... ... ++.-+.+..+.|.++..++.+||.-|
T Consensus 81 ---~~~aDvvii~VpTp~~~~~~~~~-----Dl~~V~~~~~~i~~~l~~g~iVV~~S 129 (431)
T 3ojo_A 81 ---PEASDVFIIAVPTPNNDDQYRSC-----DISLVMRALDSILPFLKKGNTIIVES 129 (431)
T ss_dssp ---CCCCSEEEECCCCCBCSSSSCBB-----CCHHHHHHHHHHGGGCCTTEEEEECS
T ss_pred ---hhhCCEEEEEeCCCccccccCCc-----cHHHHHHHHHHHHHhCCCCCEEEEec
Confidence 4689999998876653210 011 12333444455555445555444433
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0067 Score=55.30 Aligned_cols=108 Identities=17% Similarity=0.111 Sum_probs=62.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec--CcccccC----
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFE---- 171 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t--~~~eal~---- 171 (337)
||.|+||+|++|++++..|+..+.. .|.+ ++......... ++.... . ...+.. ...+.++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~----~V~~--~~r~~~~~~~~----~~~~~~--~--~~d~~~~~~~~~~~~~~~~ 66 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGIT----DILV--VDNLKDGTKFV----NLVDLN--I--ADYMDKEDFLIQIMAGEEF 66 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCC----CEEE--EECCSSGGGGH----HHHTSC--C--SEEEEHHHHHHHHHTTCCC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCc----EEEE--EccCCCCchhh----hcCcce--e--ccccccHHHHHHHHhcccc
Confidence 5899999999999999999987621 2433 22211111111 111110 1 111211 1123344
Q ss_pred -CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 172 -DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 172 -dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++|+||.+++.......+..+....|+.-...+.+.+.+. .. .+|.+|
T Consensus 67 ~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~--~~v~~S 115 (310)
T 1eq2_A 67 GDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EI--PFLYAS 115 (310)
T ss_dssp SSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH-TC--CEEEEE
T ss_pred CCCcEEEECcccccCcccCHHHHHHHHHHHHHHHHHHHHHc-CC--eEEEEe
Confidence 4999999887543322344556788888888888888876 33 566655
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.027 Score=44.99 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.|||+|+|+ |.+|..++..|...+.
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~ 28 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGH 28 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC
Confidence 369999995 9999999999988663
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0014 Score=59.16 Aligned_cols=108 Identities=13% Similarity=0.073 Sum_probs=61.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|+||.|+||+|.+|++++..|+..+. .|. +++. +.+... .........++.-.....+.+++.|+
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~-----~V~--~~~r--~~~~~~------~~~~~~~~~Dl~d~~~~~~~~~~~d~ 66 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAH-----EVR--LSDI--VDLGAA------EAHEEIVACDLADAQAVHDLVKDCDG 66 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEE-----EEE--ECCS--SCCCCC------CTTEEECCCCTTCHHHHHHHHTTCSE
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCC-----EEE--EEeC--CCcccc------CCCccEEEccCCCHHHHHHHHcCCCE
Confidence 35899999999999999999887653 133 3332 221100 00000000000000012356788999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
||.++|.. ...+..+.+..|+.-...+.+.+.+. .. ..||++|
T Consensus 67 vi~~a~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~iv~~S 109 (267)
T 3ay3_A 67 IIHLGGVS--VERPWNDILQANIIGAYNLYEAARNL-GK-PRIVFAS 109 (267)
T ss_dssp EEECCSCC--SCCCHHHHHHHTHHHHHHHHHHHHHT-TC-CEEEEEE
T ss_pred EEECCcCC--CCCCHHHHHHHHHHHHHHHHHHHHHh-CC-CEEEEeC
Confidence 99988754 12233456778888788888887764 22 3555554
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.006 Score=55.13 Aligned_cols=114 Identities=14% Similarity=0.119 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcc--------
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~-------- 167 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++.... .-+..--.+.
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~D~~~~~~v~~~~~ 74 (259)
T 4e6p_A 8 GKSALITGSARGIGRAFAEAYVREGA-----TVAI----ADIDIERARQAAAEIGPAA----YAVQMDVTRQDSIDAAIA 74 (259)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCTTE----EEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCCCc----eEEEeeCCCHHHHHHHHH
Confidence 35799999999999999999999875 2444 2445555555444442111 0011000111
Q ss_pred ---cccCCCcEEEEecccCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ---ELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 ---eal~dADvVIitag~prk~g---~~---R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+.+.|++|..+|...... .+ -...+..|+. +.+...+.+.+. .+.+.||+++-
T Consensus 75 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~iv~isS 142 (259)
T 4e6p_A 75 ATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQ-GRGGKIINMAS 142 (259)
T ss_dssp HHHHHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECC
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEEECC
Confidence 12237999999988643211 11 1223445543 455555666554 34677788774
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0021 Score=58.68 Aligned_cols=111 Identities=11% Similarity=0.093 Sum_probs=62.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc---
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e--- 168 (337)
++++|.|+||+|.+|.+++..|+..|. .|.+. +++.+.++....++.. ++.. ..| +.+
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~-------~~~~~~~Dv~~~~~~~ 67 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAGD-----TVIGT----ARRTEALDDLVAAYPD-------RAEAISLDVTDGERID 67 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE----ESSGGGGHHHHHHCTT-------TEEEEECCTTCHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHhccC-------CceEEEeeCCCHHHHH
Confidence 346799999999999999999998875 24432 3444444433221111 1111 111 111
Q ss_pred --------ccCCCcEEEEecccCC-CC--CCch---hhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 --------LFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 --------al~dADvVIitag~pr-k~--g~~R---~dll~~N~~I----~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+.|+||..+|... .+ ..+. ...+..|..- .+.+.+.+.+. ..+.||+++-
T Consensus 68 ~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~~~iv~~sS 138 (281)
T 3m1a_A 68 VVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRER--GSGSVVNISS 138 (281)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 1237899999988532 11 1121 2345556544 66666777664 3457777764
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0097 Score=57.13 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=22.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
++++||+|+||+|.+|..++..|...+
T Consensus 2 ~~~~kV~IiGAtG~iG~~llr~L~~~p 28 (350)
T 2ep5_A 2 ADKIKVSLLGSTGMVGQKMVKMLAKHP 28 (350)
T ss_dssp CCCEEEEEESCSSHHHHHHHHHHTTCS
T ss_pred CCCcEEEEECcCCHHHHHHHHHHHhCC
Confidence 456899999999999999999876543
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.019 Score=51.18 Aligned_cols=114 Identities=13% Similarity=0.079 Sum_probs=66.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e---- 168 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.+.. .++.. ..| +.+
T Consensus 9 ~k~vlITGas~giG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 75 (253)
T 3qiv_A 9 NKVGIVTGSGGGIGQAYAEALAREGA-----AVVV----ADINAEAAEAVAKQIVADG----GTAISVAVDVSDPESAKA 75 (253)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CEEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHH
Confidence 45799999999999999999999875 2444 2455566665555554321 12221 111 111
Q ss_pred -------ccCCCcEEEEecccC---C-CC--CCch---hhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 169 -------LFEDAEWALLIGAKP---R-GP--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 169 -------al~dADvVIitag~p---r-k~--g~~R---~dll~~N~~I----~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
.+...|++|..+|.. . .+ ..+. ...+..|+.- .+.+.+.+.+. ..+.||+++-.
T Consensus 76 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 149 (253)
T 3qiv_A 76 MADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKR--GGGAIVNQSST 149 (253)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCEEEEEECC-
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCCEEEEECCc
Confidence 123789999988762 1 11 1121 2345556443 66666777664 45677787754
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.015 Score=52.65 Aligned_cols=67 Identities=18% Similarity=0.110 Sum_probs=41.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec---CcccccCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---NPYELFED 172 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t---~~~eal~d 172 (337)
|+||.|+|| |++|++++..|...+. .|.. + +++.+.... +.+. .+.... .+.+ +++
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~----~~~~------~~~~~~~D~~d~~-~~~ 63 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGW-----RIIG--T--SRNPDQMEA----IRAS------GAEPLLWPGEEPS-LDG 63 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTC-----EEEE--E--ESCGGGHHH----HHHT------TEEEEESSSSCCC-CTT
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCC-----EEEE--E--EcChhhhhh----HhhC------CCeEEEecccccc-cCC
Confidence 479999997 9999999999988764 2433 1 333333322 1111 112111 1233 889
Q ss_pred CcEEEEecccC
Q 019713 173 AEWALLIGAKP 183 (337)
Q Consensus 173 ADvVIitag~p 183 (337)
+|+||.+++..
T Consensus 64 ~d~vi~~a~~~ 74 (286)
T 3ius_A 64 VTHLLISTAPD 74 (286)
T ss_dssp CCEEEECCCCB
T ss_pred CCEEEECCCcc
Confidence 99999988743
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=60.56 Aligned_cols=114 Identities=12% Similarity=0.054 Sum_probs=63.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--c----ccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--P----YEL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~----~ea 169 (337)
|||.|+||+|+||++++..|+..+.- -.|.. ++........+.. .++.+ ..++... .| + .++
T Consensus 4 m~vlVTGatG~iG~~l~~~L~~~g~~---~~V~~--~~r~~~~~~~~~~-~~~~~-----~~~~~~~~~Dl~d~~~~~~~ 72 (336)
T 2hun_A 4 MKLLVTGGMGFIGSNFIRYILEKHPD---WEVIN--IDKLGYGSNPANL-KDLED-----DPRYTFVKGDVADYELVKEL 72 (336)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCTT---CEEEE--EECCCTTCCGGGG-TTTTT-----CTTEEEEECCTTCHHHHHHH
T ss_pred CeEEEECCCchHHHHHHHHHHHhCCC---CEEEE--EecCcccCchhHH-hhhcc-----CCceEEEEcCCCCHHHHHHH
Confidence 58999999999999999999886520 02332 2221111111110 11111 1122221 11 1 234
Q ss_pred cCCCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 170 FEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 170 l~dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+.++|+||.++|..... ..+..+.+..|+.-...+.+.+.+. .....||++|
T Consensus 73 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~S 126 (336)
T 2hun_A 73 VRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRE-NPEVRFVHVS 126 (336)
T ss_dssp HHTCSEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHH-CTTSEEEEEE
T ss_pred hhCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Confidence 57899999998753210 0122346778888888888888876 3334666665
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.002 Score=61.36 Aligned_cols=111 Identities=15% Similarity=0.161 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcC-CCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-C------c
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGE-VLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N------P 166 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~-l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~------~ 166 (337)
+++||.|+||+|++|++++..|+..+ . .|.+ ++ ++..... ..+.. ..++.+.. | .
T Consensus 31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-----~V~~--~~--r~~~~~~---~~l~~-----~~~v~~~~~Dl~d~~~l 93 (377)
T 2q1s_A 31 ANTNVMVVGGAGFVGSNLVKRLLELGVN-----QVHV--VD--NLLSAEK---INVPD-----HPAVRFSETSITDDALL 93 (377)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCS-----EEEE--EC--CCTTCCG---GGSCC-----CTTEEEECSCTTCHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCc-----eEEE--EE--CCCCCch---hhccC-----CCceEEEECCCCCHHHH
Confidence 35799999999999999999999876 3 2433 22 2211110 00100 01222211 1 1
Q ss_pred ccccCCCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 YELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 ~eal~dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.++++++|+||.+++..... ..+..+.+..|+.-...+.+.+.+. ..-..||.+|-
T Consensus 94 ~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~~~~V~~SS 151 (377)
T 2q1s_A 94 ASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHF-KRLKKVVYSAA 151 (377)
T ss_dssp HHCCSCCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTC-SSCCEEEEEEE
T ss_pred HHHhhCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEeCC
Confidence 24677999999988753211 0123345677877778888877663 11125666654
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0013 Score=59.96 Aligned_cols=101 Identities=15% Similarity=0.086 Sum_probs=56.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHH----hHHHhHhhhccCCcccEEEecCcccccC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE----GVAMELEDSLFPLLREVKIGINPYELFE 171 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~----g~a~DL~d~~~~~~~~v~i~t~~~eal~ 171 (337)
++||.|+| +|++|++++..|...|. .|... +++.+.+. -...|+.|. ....++++
T Consensus 3 ~~~ilVtG-aG~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~~~~~~~~Dl~d~-----------~~~~~~~~ 61 (286)
T 3gpi_A 3 LSKILIAG-CGDLGLELARRLTAQGH-----EVTGL----RRSAQPMPAGVQTLIADVTRP-----------DTLASIVH 61 (286)
T ss_dssp CCCEEEEC-CSHHHHHHHHHHHHTTC-----CEEEE----ECTTSCCCTTCCEEECCTTCG-----------GGCTTGGG
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHCCC-----EEEEE----eCCccccccCCceEEccCCCh-----------HHHHHhhc
Confidence 46899999 59999999999998774 24432 22222211 001111111 01123455
Q ss_pred C-CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 172 D-AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 172 d-ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+ +|+||.+++... .+..+....|+.-...+.+.+.+. .. ..+|.+|
T Consensus 62 ~~~d~vih~a~~~~---~~~~~~~~~n~~~~~~ll~a~~~~-~~-~~~v~~S 108 (286)
T 3gpi_A 62 LRPEILVYCVAASE---YSDEHYRLSYVEGLRNTLSALEGA-PL-QHVFFVS 108 (286)
T ss_dssp GCCSEEEECHHHHH---HC-----CCSHHHHHHHHHHTTTS-CC-CEEEEEE
T ss_pred CCCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHHHHHhhC-CC-CEEEEEc
Confidence 6 999999886431 112234556777777788877763 22 3566665
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.006 Score=56.05 Aligned_cols=114 Identities=10% Similarity=-0.010 Sum_probs=59.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEec-cccchhhHHHhHHHhHhhhccCCcccEEEe-------cCccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL-GSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYE 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~-d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-------t~~~e 168 (337)
+||.|+||+|+||++++..|+..|. .|..... +.+ +.+++... .++... ..++.+. ..-.+
T Consensus 2 k~vlVTGatG~iG~~l~~~L~~~G~-----~V~~~~r~~~~-~~~~~~~~-~~~~~~----~~~~~~~~~Dl~d~~~~~~ 70 (322)
T 2p4h_X 2 GRVCVTGGTGFLGSWIIKSLLENGY-----SVNTTIRADPE-RKRDVSFL-TNLPGA----SEKLHFFNADLSNPDSFAA 70 (322)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEEECCCC-----CCCHHH-HTSTTH----HHHEEECCCCTTCGGGGHH
T ss_pred CEEEEECChhHHHHHHHHHHHHCCC-----EEEEEEeCCcc-chhHHHHH-Hhhhcc----CCceEEEecCCCCHHHHHH
Confidence 5899999999999999999998764 2433211 111 00111110 111100 0011111 11235
Q ss_pred ccCCCcEEEEecccCCCCCCc-hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 169 al~dADvVIitag~prk~g~~-R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+++++|+||.+++.......+ ..+.+..|+.-...+.+.+.+. ..-..||++|
T Consensus 71 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~-~~~~~iV~~S 124 (322)
T 2p4h_X 71 AIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNS-KTVKRFIYTS 124 (322)
T ss_dssp HHTTCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHTTC-SSCCEEEEEE
T ss_pred HHcCCCEEEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhc-CCccEEEEec
Confidence 678999999988532101111 1236778888888888877664 1123566655
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.014 Score=51.75 Aligned_cols=113 Identities=11% Similarity=0.069 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e---- 168 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... .++.. ..| +.+
T Consensus 11 ~~~vlVtGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 77 (255)
T 1fmc_A 11 GKCAIITGAGAGIGKEIAITFATAGA-----SVVV----SDINADAANHVVDEIQQLG----GQAFACRCDITSEQELSA 77 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHHHhC----CceEEEEcCCCCHHHHHH
Confidence 36899999999999999999998774 2443 2445555554444444321 12221 111 111
Q ss_pred cc-------CCCcEEEEecccCCC-C-CCch---hhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 LF-------EDAEWALLIGAKPRG-P-GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 al-------~dADvVIitag~prk-~-g~~R---~dll~~N~~I----~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+ .+.|+||..+|.... + ..+. ...+..|..- .+...+.+.+. ..+.||+++-
T Consensus 78 ~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~~~iv~~sS 146 (255)
T 1fmc_A 78 LADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKN--GGGVILTITS 146 (255)
T ss_dssp HHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEcc
Confidence 22 379999998875422 1 1121 2334555443 44444444453 3457777764
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0093 Score=54.50 Aligned_cols=110 Identities=18% Similarity=0.109 Sum_probs=61.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
++||.|+||+|++|++++..|+..+. .|.. + +++.....+....+.+.. . ...+.. ...++.++|+
T Consensus 7 ~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~~~~~~~~~-~-~~~~~~---~~~Dl~~~d~ 72 (321)
T 3vps_A 7 KHRILITGGAGFIGGHLARALVASGE-----EVTV--L--DDLRVPPMIPPEGTGKFL-E-KPVLEL---EERDLSDVRL 72 (321)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----CEEE--E--CCCSSCCSSCCTTSSEEE-C-SCGGGC---CHHHHTTEEE
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCC-----EEEE--E--ecCCcccccchhhhhhhc-c-CCCeeE---EeCccccCCE
Confidence 57999999999999999999998764 2433 2 222110000000011100 0 001111 1234558999
Q ss_pred EEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 176 ALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 176 VIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
||.+++..... .....+... |+.-...+.+.+.+. ... .+|.+|
T Consensus 73 vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~-~v~-~~v~~S 118 (321)
T 3vps_A 73 VYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSV-GVP-KVVVGS 118 (321)
T ss_dssp EEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHH-TCC-EEEEEE
T ss_pred EEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHc-CCC-eEEEec
Confidence 99988754210 112223455 888888899888886 333 566655
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.016 Score=51.04 Aligned_cols=116 Identities=18% Similarity=0.171 Sum_probs=63.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecC--cccc-----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PYEL----- 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~--~~ea----- 169 (337)
++|.|+||+|.+|.+++..|+..|. .|.+. . +++.+.++....++...... ....+..| +.+.
T Consensus 2 k~vlITGasggiG~~~a~~l~~~G~-----~v~~~-~--~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~ 71 (245)
T 2ph3_A 2 RKALITGASRGIGRAIALRLAEDGF-----ALAIH-Y--GQNREKAEEVAEEARRRGSP--LVAVLGANLLEAEAATALV 71 (245)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTC-----EEEEE-E--SSCHHHHHHHHHHHHHTTCS--CEEEEECCTTSHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE-c--CCCHHHHHHHHHHHHhcCCc--eEEEEeccCCCHHHHHHHH
Confidence 5799999999999999999998774 24331 1 33444444443334322101 01102111 1111
Q ss_pred ------cCCCcEEEEecccCCCCC---C---chhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 170 ------FEDAEWALLIGAKPRGPG---M---ERAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 170 ------l~dADvVIitag~prk~g---~---~R~dll~~N~~I----~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
+.+.|+||..+|...... . +....+..|..- .+.+.+.+.+. ..+.||+++-.
T Consensus 72 ~~~~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~--~~~~iv~~sS~ 140 (245)
T 2ph3_A 72 HQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKA--RFGRIVNITSV 140 (245)
T ss_dssp HHHHHHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCT
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhc--CCCEEEEEeCh
Confidence 347899999988643211 1 112334555443 56666666654 34577777753
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0081 Score=57.63 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=22.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
++++||+|+||+|.+|..++..|...+
T Consensus 2 ~~~~kV~IiGAtG~iG~~llr~L~~~p 28 (345)
T 2ozp_A 2 TGKKTLSIVGASGYAGGEFLRLALSHP 28 (345)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHTCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHcCC
Confidence 346799999999999999999887654
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0082 Score=59.67 Aligned_cols=118 Identities=16% Similarity=0.150 Sum_probs=62.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch-hhHHHhHHHhHhhhc-----cCCcccEEEecCcc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSL-----FPLLREVKIGINPY 167 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~-~~~l~g~a~DL~d~~-----~~~~~~v~i~t~~~ 167 (337)
..+++|.|+||+|++|++++..|...+. .|. .++.... .+.++.....+.... .....++.+...|.
T Consensus 148 ~~~~~VLVTGatG~iG~~l~~~L~~~g~-----~V~--~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl 220 (508)
T 4f6l_B 148 RPLGNTLLTGATGFLGAYLIEALQGYSH-----RIY--CFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDF 220 (508)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHTBTTEE-----EEE--EEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBT
T ss_pred CCCCeEEEECCccchHHHHHHHHHhcCC-----EEE--EEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCC
Confidence 4568999999999999999999844332 232 2222221 112222211121110 00012333321111
Q ss_pred ------cccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 168 ------ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 168 ------eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
..+.++|+||.+++... ......++...|+.-.+.+.+.+.+. ...++.+|
T Consensus 221 ~d~~~l~~~~~~D~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~~v~iS 277 (508)
T 4f6l_B 221 ECMDDVVLPENMDTIIHAGARTD-HFGDDDEFEKVNVQGTVDVIRLAQQH---HARLIYVS 277 (508)
T ss_dssp TBCSSCCCSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHTT---TCEEEEEE
T ss_pred cccccCCCccCCCEEEECCceec-CCCCHHHHhhhHHHHHHHHHHHHHhC---CCcEEEeC
Confidence 14679999999887542 22234456778888888888887762 33556655
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.007 Score=58.07 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=55.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---- 171 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~---- 171 (337)
.+||+||| .|.||.+++..|...+. .|.+ + |++.+.++. +.++ . +...++..+.++
T Consensus 8 ~~kIgIIG-~G~mG~slA~~L~~~G~-----~V~~--~--dr~~~~~~~-a~~~-----G----~~~~~~~~e~~~~a~~ 67 (341)
T 3ktd_A 8 SRPVCILG-LGLIGGSLLRDLHAANH-----SVFG--Y--NRSRSGAKS-AVDE-----G----FDVSADLEATLQRAAA 67 (341)
T ss_dssp SSCEEEEC-CSHHHHHHHHHHHHTTC-----CEEE--E--CSCHHHHHH-HHHT-----T----CCEESCHHHHHHHHHH
T ss_pred CCEEEEEe-ecHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHH-HHHc-----C----CeeeCCHHHHHHhccc
Confidence 47999999 59999999999998773 2544 3 455555442 1211 1 122334444454
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
++|+||++.. ...+.++.+.|..+ .|+++|+.++.
T Consensus 68 ~aDlVilavP----------------~~~~~~vl~~l~~~-~~~~iv~Dv~S 102 (341)
T 3ktd_A 68 EDALIVLAVP----------------MTAIDSLLDAVHTH-APNNGFTDVVS 102 (341)
T ss_dssp TTCEEEECSC----------------HHHHHHHHHHHHHH-CTTCCEEECCS
T ss_pred CCCEEEEeCC----------------HHHHHHHHHHHHcc-CCCCEEEEcCC
Confidence 5799999751 12344555566665 68877766654
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.015 Score=51.36 Aligned_cols=108 Identities=15% Similarity=0.063 Sum_probs=57.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHH-hHHHhHhhhccCCcccEEEecCccccc-CCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGINPYELF-EDA 173 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~-g~a~DL~d~~~~~~~~v~i~t~~~eal-~dA 173 (337)
|++|.|+||+|.+|.+++..|+..+. .|.+. +++.+.++ ....|+.+... +. .-.+.+ .+.
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~~~~~D~~~~~~-~~-------~~~~~~~~~~ 63 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGH-----TVIGI----DRGQADIEADLSTPGGRETA-VA-------AVLDRCGGVL 63 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESSSSSEECCTTSHHHHHHH-HH-------HHHHHHTTCC
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCC-----EEEEE----eCChhHccccccCCcccHHH-HH-------HHHHHcCCCc
Confidence 35899999999999999999998764 24432 22222111 02233433210 00 000112 479
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHH----HHHhhcCCCeEEEEeCC
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGK----ALNAVASRNVKVIVVGN 223 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~----~I~~~a~p~aivIvvtN 223 (337)
|+||.++|.... .......+..|..-...+.+ .+.+. ....||+++-
T Consensus 64 d~vi~~Ag~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~~~iv~~sS 114 (255)
T 2dkn_A 64 DGLVCCAGVGVT-AANSGLVVAVNYFGVSALLDGLAEALSRG--QQPAAVIVGS 114 (255)
T ss_dssp SEEEECCCCCTT-SSCHHHHHHHHTHHHHHHHHHHHHHHHTS--SSCEEEEECC
T ss_pred cEEEECCCCCCc-chhHHHHHHHHhHHHHHHHHHHHHHhhhc--CCceEEEEec
Confidence 999999886431 12233455666544444444 44432 2356777763
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.011 Score=56.87 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=44.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
+||+|+||+|.+|..+...|.... |. .+.+.++..+.+ .|..+.+. .....+..-+.+++.++|+|
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~-fp---~~el~~~~s~~~----aG~~~~~~------~~~~~~~~~~~~~~~~~Dvv 67 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERD-FP---ASAVRFFASARS----QGRKLAFR------GQEIEVEDAETADPSGLDIA 67 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT-CC---EEEEEEEECTTT----SSCEEEET------TEEEEEEETTTSCCTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-CC---ceEEEEEECccc----CCCceeec------CCceEEEeCCHHHhccCCEE
Confidence 589999999999999999888875 32 245555543322 22222111 12334433334678999999
Q ss_pred EEecc
Q 019713 177 LLIGA 181 (337)
Q Consensus 177 Iitag 181 (337)
+++.+
T Consensus 68 f~a~~ 72 (344)
T 3tz6_A 68 LFSAG 72 (344)
T ss_dssp EECSC
T ss_pred EECCC
Confidence 98753
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.026 Score=49.98 Aligned_cols=113 Identities=11% Similarity=-0.034 Sum_probs=61.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc----c
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE----L 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e----a 169 (337)
++|.|+||+|.+|.+++..|+..+. .|.+ + +++.+.++....++... ...++... .| +.+ .
T Consensus 3 k~vlItGasggiG~~~a~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~ 70 (250)
T 2cfc_A 3 RVAIVTGASSGNGLAIATRFLARGD-----RVAA--L--DLSAETLEETARTHWHA---YADKVLRVRADVADEGDVNAA 70 (250)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHHHHHHHSTT---TGGGEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHH
Confidence 5799999999999999999998774 2444 2 34445554433333111 11122221 11 121 2
Q ss_pred c-------CCCcEEEEecccCCCCC------Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 F-------EDAEWALLIGAKPRGPG------ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 l-------~dADvVIitag~prk~g------~~---R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+ .+.|+||..+|...... .+ -...+..|.. +.+.+.+.+.+. ..+.||+++-
T Consensus 71 ~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~iv~isS 142 (250)
T 2cfc_A 71 IAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQ--GAGVIVNIAS 142 (250)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 2 37899999887542111 11 1123444543 335555666554 3457777764
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.043 Score=48.31 Aligned_cols=76 Identities=26% Similarity=0.279 Sum_probs=47.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--cc----c
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY----E 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~----e 168 (337)
+++|.|+||+|.+|.+++..|+..|. .|.+ .+++.++++..+.++.... . .++... .| +. +
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~v~~ 69 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGY-----ALAL----GARSVDRLEKIAHELMQEQ-G--VEVFYHHLDVSKAESVEE 69 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHH-C--CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhc-C--CeEEEEEeccCCHHHHHH
Confidence 45799999999999999999999875 2444 2455566665555554221 1 122211 11 11 1
Q ss_pred c-------cCCCcEEEEecccC
Q 019713 169 L-------FEDAEWALLIGAKP 183 (337)
Q Consensus 169 a-------l~dADvVIitag~p 183 (337)
. +...|++|..+|..
T Consensus 70 ~~~~~~~~~g~id~li~~Ag~~ 91 (235)
T 3l77_A 70 FSKKVLERFGDVDVVVANAGLG 91 (235)
T ss_dssp HCC-HHHHHSSCSEEEECCCCC
T ss_pred HHHHHHHhcCCCCEEEECCccc
Confidence 2 23789999998864
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0037 Score=60.35 Aligned_cols=106 Identities=14% Similarity=0.138 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+|+||+|+||+|.+|..++..|...+.|.. -.+.+..+....+..+ ..+-.+..+.-...+.+..-+.++++++|
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~-~~~ei~~l~s~~~agk----~~~~~~~~l~~~~~~~~~~~~~~~~~~~D 82 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYAD-GRLRIGALTAATSAGS----TLGEHHPHLTPLAHRVVEPTEAAVLGGHD 82 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHT-TSEEEEEEEESSCTTS----BGGGTCTTCGGGTTCBCEECCHHHHTTCS
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCC-ccEEEEEEECCCcCCC----chhhhcccccccceeeeccCCHHHhcCCC
Confidence 357999999999999999999886550000 0133333322221111 11100000000011222222346688999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
+|+++.|.. . -+++++.+ + .++++|..|.|.
T Consensus 83 vVf~alg~~----~------------s~~~~~~~-~---~G~~vIDlSa~~ 113 (352)
T 2nqt_A 83 AVFLALPHG----H------------SAVLAQQL-S---PETLIIDCGADF 113 (352)
T ss_dssp EEEECCTTS----C------------CHHHHHHS-C---TTSEEEECSSTT
T ss_pred EEEECCCCc----c------------hHHHHHHH-h---CCCEEEEECCCc
Confidence 999976431 1 23455544 3 357888888885
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0082 Score=56.41 Aligned_cols=79 Identities=16% Similarity=0.141 Sum_probs=43.9
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC
Q 019713 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (337)
Q Consensus 92 ~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~ 171 (337)
.|.+++||+|+||+|.||..++..+...+- +.|.-. +|++.....| .|+.+...--...+.++.+..+.+.
T Consensus 17 ~m~~~irV~V~Ga~GrMGr~i~~~v~~~~~------~eLvg~-vd~~~~~~~G--~d~gel~G~~~~gv~v~~dl~~ll~ 87 (288)
T 3ijp_A 17 QGPGSMRLTVVGANGRMGRELITAIQRRKD------VELCAV-LVRKGSSFVD--KDASILIGSDFLGVRITDDPESAFS 87 (288)
T ss_dssp ----CEEEEESSTTSHHHHHHHHHHHTCSS------EEEEEE-BCCTTCTTTT--SBGGGGTTCSCCSCBCBSCHHHHTT
T ss_pred hccCCeEEEEECCCCHHHHHHHHHHHhCCC------CEEEEE-EecCCccccc--cchHHhhccCcCCceeeCCHHHHhc
Confidence 456778999999889999999998876432 333211 2333222222 2333222100124555555566688
Q ss_pred CCcEEEEe
Q 019713 172 DAEWALLI 179 (337)
Q Consensus 172 dADvVIit 179 (337)
++|+||-.
T Consensus 88 ~aDVvIDF 95 (288)
T 3ijp_A 88 NTEGILDF 95 (288)
T ss_dssp SCSEEEEC
T ss_pred CCCEEEEc
Confidence 99999853
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0029 Score=60.26 Aligned_cols=119 Identities=11% Similarity=0.134 Sum_probs=63.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc-hhhH-------------HHhHHHhHhhhccCCccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQA-------------LEGVAMELEDSLFPLLRE 159 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~-~~~~-------------l~g~a~DL~d~~~~~~~~ 159 (337)
.++++|.|+||+|+||++++..|+..|. .|.+ ++... .... +.....++.+.. . .+
T Consensus 9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~-----~V~~--~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~--~~ 78 (404)
T 1i24_A 9 HHGSRVMVIGGDGYCGWATALHLSKKNY-----EVCI--VDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-G--KS 78 (404)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-C--CC
T ss_pred cCCCeEEEeCCCcHHHHHHHHHHHhCCC-----eEEE--EEecCccccccccccccccccchhhhhhhhHhhcc-C--Cc
Confidence 4678999999999999999999998764 2433 22211 1000 000001111111 0 11
Q ss_pred EEE-ecC--cc----cccCC--CcEEEEecccCCCC--CCch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 160 VKI-GIN--PY----ELFED--AEWALLIGAKPRGP--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 160 v~i-~t~--~~----eal~d--ADvVIitag~prk~--g~~R---~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.. ..| +. +++++ +|+||.+||....+ ..+- ...+..|+.-...+.+.+.+. .....||++|-
T Consensus 79 v~~~~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~~~~~V~~SS 155 (404)
T 1i24_A 79 IELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEF-GEECHLVKLGT 155 (404)
T ss_dssp CEEEESCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEECC
T ss_pred eEEEECCCCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHh-CCCcEEEEeCc
Confidence 221 111 11 33555 99999998754211 0111 125677888888888888776 33336777764
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.017 Score=51.09 Aligned_cols=114 Identities=15% Similarity=0.091 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e---- 168 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ + +++.++++....++.... . .++.. ..| +.+
T Consensus 7 ~~~vlVtGasggiG~~la~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~ 74 (248)
T 2pnf_A 7 GKVSLVTGSTRGIGRAIAEKLASAGS-----TVII--T--GTSGERAKAVAEEIANKY-G--VKAHGVEMNLLSEESINK 74 (248)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE--E--ESSHHHHHHHHHHHHHHH-C--CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE--E--eCChHHHHHHHHHHHhhc-C--CceEEEEccCCCHHHHHH
Confidence 35799999999999999999998774 2443 2 344455544433443211 1 11221 111 111
Q ss_pred c-------cCCCcEEEEecccCCCCC---Cc---hhhhHHhhHHHH----HHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 L-------FEDAEWALLIGAKPRGPG---ME---RAGLLDINGQIF----AEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 a-------l~dADvVIitag~prk~g---~~---R~dll~~N~~I~----~~i~~~I~~~a~p~aivIvvtN 223 (337)
. +.+.|+||..+|...... .+ -.+.+..|..-. +.+.+.+.+. ..+.||+++-
T Consensus 75 ~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~~~iv~~sS 144 (248)
T 2pnf_A 75 AFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQ--RWGRIVNISS 144 (248)
T ss_dssp HHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCcEEEEEcc
Confidence 2 237999999988643211 11 123455554433 4445555553 3457777764
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.027 Score=50.89 Aligned_cols=114 Identities=15% Similarity=0.115 Sum_probs=63.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cccc----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL---- 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~ea---- 169 (337)
++|.|+||+|.||.+++..|+..|. .|.+ . +++.+.++....++.+.. + ..++.. ..| +.+.
T Consensus 14 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~-~-~~~~~~~~~D~~~~~~v~~~ 82 (267)
T 1iy8_A 14 RVVLITGGGSGLGRATAVRLAAEGA-----KLSL--V--DVSSEGLEASKAAVLETA-P-DAEVLTTVADVSDEAQVEAY 82 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHHHHHHHHHHC-T-TCCEEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHHhhc-C-CceEEEEEccCCCHHHHHHH
Confidence 5799999999999999999998774 2444 2 445555554444444321 0 012221 111 1221
Q ss_pred -------cCCCcEEEEecccCCC--CC--Cc---hhhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 -------FEDAEWALLIGAKPRG--PG--ME---RAGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 -------l~dADvVIitag~prk--~g--~~---R~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+...|++|..+|.... +- .+ -...+..|. .+.+.+.+.+.+. ..+.||+++-
T Consensus 83 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS 152 (267)
T 1iy8_A 83 VTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ--GSGMVVNTAS 152 (267)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEEcc
Confidence 2367999999886432 11 11 122344554 3455666666664 3456777764
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0059 Score=56.16 Aligned_cols=100 Identities=19% Similarity=0.154 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC--CC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DA 173 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~--dA 173 (337)
++||.|+||+|++|++++..|+..+. .+.+ ++ ++. ..|+.|.. ...++++ ++
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~-----~v~~--~~--r~~------~~D~~d~~-----------~~~~~~~~~~~ 56 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGD-----VELV--LR--TRD------ELNLLDSR-----------AVHDFFASERI 56 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT-----EEEE--CC--CTT------TCCTTCHH-----------HHHHHHHHHCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-----eEEE--Ee--cCc------cCCccCHH-----------HHHHHHHhcCC
Confidence 36899999999999999999987664 2332 22 111 12333211 1123455 89
Q ss_pred cEEEEecccCCCCC---CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 174 EWALLIGAKPRGPG---MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 174 DvVIitag~prk~g---~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|+||.+++...... .+..+....|+.-...+.+.+.+. .. ..+|.+|-
T Consensus 57 d~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~~v~~SS 107 (321)
T 1e6u_A 57 DQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN-DV-NKLLFLGS 107 (321)
T ss_dssp SEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC-CEEEEECC
T ss_pred CEEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHh-CC-CeEEEEcc
Confidence 99999887542111 123345677888888888888774 22 26777764
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.064 Score=48.59 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=63.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc-----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE----- 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e----- 168 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ + +++.+.++....++.... .++... .| +.+
T Consensus 32 k~vlITGasggIG~~la~~L~~~G~-----~V~~--~--~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~v~~~ 98 (272)
T 1yb1_A 32 EIVLITGAGHGIGRLTAYEFAKLKS-----KLVL--W--DINKHGLEETAAKCKGLG----AKVHTFVVDCSNREDIYSS 98 (272)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-----EEEE--E--EcCHHHHHHHHHHHHhcC----CeEEEEEeeCCCHHHHHHH
Confidence 5899999999999999999998874 2443 2 344455554444444321 122211 11 111
Q ss_pred ------ccCCCcEEEEecccCCCCCC---c---hhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 169 ------LFEDAEWALLIGAKPRGPGM---E---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 169 ------al~dADvVIitag~prk~g~---~---R~dll~~N~~I----~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
.+.+.|+||..+|....... + ....+..|+.- .+.+.+.+.+. ..+.||+++-.
T Consensus 99 ~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~~~iv~isS~ 168 (272)
T 1yb1_A 99 AKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN--NHGHIVTVASA 168 (272)
T ss_dssp HHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCC
T ss_pred HHHHHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEEech
Confidence 12378999999886432111 1 11334555433 44555555553 45677777753
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.035 Score=50.65 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc-----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~----- 167 (337)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.++++..+.++.+.. .++.. ..| +.
T Consensus 4 ~k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~ 70 (264)
T 3tfo_A 4 DKVILITGASGGIGEGIARELGVAGA-----KILL----GARRQARIEAIATEIRDAG----GTALAQVLDVTDRHSVAA 70 (264)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHTT----CEEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHH
Confidence 35799999999999999999998875 2444 2456666666655565432 11211 111 11
Q ss_pred ------cccCCCcEEEEecccCCCCC---Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ------ELFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 ------eal~dADvVIitag~prk~g---~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|...... .+. ...+..|+ .+.+.+.+.+.+. ..+.||+++-
T Consensus 71 ~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~IV~isS 140 (264)
T 3tfo_A 71 FAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQ--RSGQIINIGS 140 (264)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCeEEEEEcC
Confidence 12347899999988643211 111 12344453 3445556666653 4567777764
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.026 Score=49.88 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=59.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--cccc---
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYEL--- 169 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~ea--- 169 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ ++ +++.+.++....++.+.. .++... .| +.+.
T Consensus 5 ~~~vlItGasggiG~~~a~~l~~~G~-----~V~~--~~-~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 72 (247)
T 2hq1_A 5 GKTAIVTGSSRGLGKAIAWKLGNMGA-----NIVL--NG-SPASTSLDATAEEFKAAG----INVVVAKGDVKNPEDVEN 72 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE--EE-CTTCSHHHHHHHHHHHTT----CCEEEEESCTTSHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC-----EEEE--Ec-CcCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHH
Confidence 36899999999999999999998874 2443 21 223333433333343211 122211 11 1222
Q ss_pred --------cCCCcEEEEecccCCCC------CCchhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 170 --------FEDAEWALLIGAKPRGP------GMERAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 170 --------l~dADvVIitag~prk~------g~~R~dll~~N~~I----~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
+.+.|+||..+|..... ..+-...+..|..- .+.+.+.+.+. ..+.||+++-.
T Consensus 73 ~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~~~iv~~sS~ 143 (247)
T 2hq1_A 73 MVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQ--KSGKIINITSI 143 (247)
T ss_dssp HHHHHHHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHH--TCEEEEEECC-
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEcCh
Confidence 23789999988764211 11222345556443 44445555443 34677777754
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0025 Score=58.95 Aligned_cols=112 Identities=13% Similarity=0.022 Sum_probs=61.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-C--cc----cc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--PY----EL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~--~~----ea 169 (337)
+||.|+||+|+||++++..|+..|. .|.+ ++ ++.+.... ..+.+.. . ..++.... | +. ++
T Consensus 4 ~~vlVtGatG~iG~~l~~~L~~~G~-----~V~~--~~--r~~~~~~~--~~~~~~~-~-~~~~~~~~~Dl~d~~~~~~~ 70 (345)
T 2z1m_A 4 KRALITGIRGQDGAYLAKLLLEKGY-----EVYG--AD--RRSGEFAS--WRLKELG-I-ENDVKIIHMDLLEFSNIIRT 70 (345)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EC--SCCSTTTT--HHHHHTT-C-TTTEEECCCCTTCHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEE--EE--CCCccccc--ccHhhcc-c-cCceeEEECCCCCHHHHHHH
Confidence 6899999999999999999998764 2433 22 22222111 0111110 0 01222211 1 11 33
Q ss_pred cCC--CcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 170 FED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 170 l~d--ADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+++ .|+||.++|..... ..+....+..|+.-...+.+.+.+. .....||++|
T Consensus 71 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~S 126 (345)
T 2z1m_A 71 IEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTV-KPDTKFYQAS 126 (345)
T ss_dssp HHHHCCSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTCEEEEEE
T ss_pred HHhcCCCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEEe
Confidence 444 59999998754211 1223445677877777788777765 3324666664
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.01 Score=53.71 Aligned_cols=109 Identities=13% Similarity=0.068 Sum_probs=62.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC--cc----cc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----EL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~--~~----ea 169 (337)
++|.|+||+|.+|.+++..|+..|. .|.+. +++.+.++..+.++.+. +. +..| +. +.
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~-------~~~~~~D~~~~~~v~~~ 71 (260)
T 1nff_A 8 KVALVSGGARGMGASHVRAMVAEGA-----KVVFG----DILDEEGKAMAAELADA-------ARYVHLDVTQPAQWKAA 71 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHTGGG-------EEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhhcC-------ceEEEecCCCHHHHHHH
Confidence 5799999999999999999998775 24442 34445544433333221 11 1111 11 22
Q ss_pred c-------CCCcEEEEecccCCCC---CCch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 F-------EDAEWALLIGAKPRGP---GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 l-------~dADvVIitag~prk~---g~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+ .+.|++|..+|..... ..+. ...+..|.. +.+.+.+.+.+. ..+.||+++-
T Consensus 72 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS 140 (260)
T 1nff_A 72 VDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA--GRGSIINISS 140 (260)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEEee
Confidence 2 3799999998864321 1111 223455543 335666666664 3467777764
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.011 Score=57.54 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++||+|+||+|.+|..+...|.....
T Consensus 18 ~~~kVaIvGAtG~vG~ell~lL~~hp~ 44 (381)
T 3hsk_A 18 SVKKAGVLGATGSVGQRFILLLSKHPE 44 (381)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCSS
T ss_pred CccEEEEECCCChHHHHHHHHHHcCCC
Confidence 347999999999999999998877554
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.036 Score=49.15 Aligned_cols=116 Identities=17% Similarity=0.108 Sum_probs=64.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-c--Ccc-----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I--NPY----- 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t--~~~----- 167 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.....+ ...+... . .+.
T Consensus 14 ~k~vlITGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~-~~~~~~~d~d~~~~~~~~~ 83 (247)
T 3i1j_A 14 GRVILVTGAARGIGAAAARAYAAHGA-----SVVL----LGRTEASLAEVSDQIKSAGQP-QPLIIALNLENATAQQYRE 83 (247)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTSC-CCEEEECCTTTCCHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EecCHHHHHHHHHHHHhcCCC-CceEEEeccccCCHHHHHH
Confidence 45899999999999999999999875 2444 245556666555555432211 1111111 1 111
Q ss_pred ------cccCCCcEEEEecccC--CCCC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ------ELFEDAEWALLIGAKP--RGPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 ------eal~dADvVIitag~p--rk~g--~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|.. ..+- .+. ...+..|.. +.+...+.+.+ ...+.||+++-
T Consensus 84 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~~~~~iv~isS 154 (247)
T 3i1j_A 84 LAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKR--SEDASIAFTSS 154 (247)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--SSSEEEEEECC
T ss_pred HHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh--CCCCeEEEEcc
Confidence 1233789999998853 2221 111 123444533 44555555555 34567777764
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0035 Score=56.98 Aligned_cols=97 Identities=13% Similarity=0.176 Sum_probs=60.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC--CC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DA 173 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~--dA 173 (337)
.+||.|+||+|++|++++..|+..+. .|.. ++ ++ ..|+.|.. ...++++ ++
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~~--r~-------~~Dl~d~~-----------~~~~~~~~~~~ 64 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKNV-----EVIP--TD--VQ-------DLDITNVL-----------AVNKFFNEKKP 64 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSE-----EEEE--EC--TT-------TCCTTCHH-----------HHHHHHHHHCC
T ss_pred cceEEEECCCChHHHHHHHHHHhCCC-----eEEe--cc--Cc-------cCCCCCHH-----------HHHHHHHhcCC
Confidence 57999999999999999999987663 2432 22 22 12333211 0123344 79
Q ss_pred cEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 174 EWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 174 DvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
|+||.++|..... ..+..+.+..|+.-...+.+.+.+. . +.+|++|
T Consensus 65 d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~--~~iv~~S 112 (292)
T 1vl0_A 65 NVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSV-G--AEIVQIS 112 (292)
T ss_dssp SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-T--CEEEEEE
T ss_pred CEEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEec
Confidence 9999988753210 0123455777888788888888775 3 3666665
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.046 Score=50.59 Aligned_cols=114 Identities=13% Similarity=0.018 Sum_probs=66.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cccc---
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL--- 169 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~ea--- 169 (337)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... .++.. ..| +.+.
T Consensus 31 gk~vlVTGas~gIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~ 97 (301)
T 3tjr_A 31 GRAAVVTGGASGIGLATATEFARRGA-----RLVL----SDVDQPALEQAVNGLRGQG----FDAHGVVCDVRHLDEMVR 97 (301)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC----CceEEEEccCCCHHHHHH
Confidence 35899999999999999999999875 2444 3456666666555555322 11221 111 1111
Q ss_pred --------cCCCcEEEEecccCCCCC---Cc---hhhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 --------FEDAEWALLIGAKPRGPG---ME---RAGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 --------l~dADvVIitag~prk~g---~~---R~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+...|++|..+|...... .+ -...+..|+ .+.+...+.+.+. ...+.||+++-
T Consensus 98 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~~g~iv~isS 168 (301)
T 3tjr_A 98 LADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQ-GTGGHIAFTAS 168 (301)
T ss_dssp HHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CSCEEEEEECC
T ss_pred HHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-CCCcEEEEeCc
Confidence 237899999988643211 11 122344443 3455555666664 44567788774
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.043 Score=49.74 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=66.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e---- 168 (337)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.+.. . .++... .| +.+
T Consensus 20 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dv~~~~~v~~ 87 (266)
T 4egf_A 20 GKRALITGATKGIGADIARAFAAAGA-----RLVL----SGRDVSELDAARRALGEQF-G--TDVHTVAIDLAEPDAPAE 87 (266)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHH-C--CCEEEEECCTTSTTHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhc-C--CcEEEEEecCCCHHHHHH
Confidence 35799999999999999999999875 2444 2455566665555554321 1 122211 11 111
Q ss_pred -------ccCCCcEEEEecccCCCCC---Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -------LFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -------al~dADvVIitag~prk~g---~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|...... .+. ...+..|+ .+.+...+.+.+. ...+.||+++-
T Consensus 88 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~g~iv~isS 158 (266)
T 4egf_A 88 LARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAA-GEGGAIITVAS 158 (266)
T ss_dssp HHHHHHHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEEEcc
Confidence 2237899999988643211 111 12344553 3455566666664 44567777764
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.023 Score=51.54 Aligned_cols=119 Identities=13% Similarity=0.062 Sum_probs=64.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc-
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE- 168 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e- 168 (337)
|.+.++|.|+||+|.||.+++..|+..|. .|.+. ..++.+.++....++.+.. .++... .| +.+
T Consensus 23 m~~~k~vlITGas~gIG~a~a~~l~~~G~-----~V~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~ 90 (272)
T 4e3z_A 23 MSDTPVVLVTGGSRGIGAAVCRLAARQGW-----RVGVN---YAANREAADAVVAAITESG----GEAVAIPGDVGNAAD 90 (272)
T ss_dssp -CCSCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE---ESSCHHHHHHHHHHHHHTT----CEEEEEECCTTCHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE---cCCChhHHHHHHHHHHhcC----CcEEEEEcCCCCHHH
Confidence 44556899999999999999999999875 24332 1334455554444444321 122221 11 111
Q ss_pred ----------ccCCCcEEEEecccCCCCC----Cch---hhhHHhhH----HHHHHHHHHHHhhc-CCCeEEEEeCC
Q 019713 169 ----------LFEDAEWALLIGAKPRGPG----MER---AGLLDING----QIFAEQGKALNAVA-SRNVKVIVVGN 223 (337)
Q Consensus 169 ----------al~dADvVIitag~prk~g----~~R---~dll~~N~----~I~~~i~~~I~~~a-~p~aivIvvtN 223 (337)
.+...|++|..+|....++ .+. ...+..|+ .+.+...+.+.+.. ...+.||+++-
T Consensus 91 v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS 167 (272)
T 4e3z_A 91 IAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSS 167 (272)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcc
Confidence 1236799999988643222 111 22344553 33444455554421 23567777775
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0023 Score=59.40 Aligned_cols=106 Identities=11% Similarity=0.061 Sum_probs=61.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe----cCc----c
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG----INP----Y 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~----t~~----~ 167 (337)
|||.|+||+|++|++++..|+.. +. .|.. + +++.+.++. +... .++.+. ++. .
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~-----~V~~--~--~r~~~~~~~----~~~~-----~~~~~~~~D~~~~~~~~~ 62 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHY-----EVYG--L--DIGSDAISR----FLNH-----PHFHFVEGDISIHSEWIE 62 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTC-----EEEE--E--ESCCGGGGG----GTTC-----TTEEEEECCTTTCSHHHH
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCC-----EEEE--E--eCCcchHHH----hhcC-----CCeEEEeccccCcHHHHH
Confidence 58999999999999999999886 43 2433 2 233222211 1100 112211 111 1
Q ss_pred cccCCCcEEEEecccCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 eal~dADvVIitag~prk~g--~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
++++++|+||.++|...... .+..+....|+.-...+.+.+.+. . ..||.+|-
T Consensus 63 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~--~~~v~~SS 117 (345)
T 2bll_A 63 YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R--KRIIFPST 117 (345)
T ss_dssp HHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T--CEEEEECC
T ss_pred hhccCCCEEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHh-C--CeEEEEec
Confidence 35668999999887532110 122345667777777777877774 3 47777764
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.24 Score=41.87 Aligned_cols=132 Identities=12% Similarity=-0.007 Sum_probs=68.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec--C---ccc--
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N---PYE-- 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t--~---~~e-- 168 (337)
+||.|+|+ |.+|..++..|... +. .+.+ +|.++++++.. .+.. ..+.... + ..+
T Consensus 40 ~~v~IiG~-G~~G~~~a~~L~~~~g~-----~V~v----id~~~~~~~~~----~~~g----~~~~~gd~~~~~~l~~~~ 101 (183)
T 3c85_A 40 AQVLILGM-GRIGTGAYDELRARYGK-----ISLG----IEIREEAAQQH----RSEG----RNVISGDATDPDFWERIL 101 (183)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHHHCS-----CEEE----EESCHHHHHHH----HHTT----CCEEECCTTCHHHHHTBC
T ss_pred CcEEEECC-CHHHHHHHHHHHhccCC-----eEEE----EECCHHHHHHH----HHCC----CCEEEcCCCCHHHHHhcc
Confidence 58999995 99999999999876 65 2544 24555554432 1111 1122211 1 122
Q ss_pred ccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEEecC
Q 019713 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALT 248 (337)
Q Consensus 169 al~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT 248 (337)
.+.++|+||++.+.+ ..|.. +...+++. .|+..++..+|-.+.. ..+.+ . +.. .++ ...
T Consensus 102 ~~~~ad~vi~~~~~~-----------~~~~~----~~~~~~~~-~~~~~ii~~~~~~~~~-~~l~~-~-G~~-~vi-~p~ 160 (183)
T 3c85_A 102 DTGHVKLVLLAMPHH-----------QGNQT----ALEQLQRR-NYKGQIAAIAEYPDQL-EGLLE-S-GVD-AAF-NIY 160 (183)
T ss_dssp SCCCCCEEEECCSSH-----------HHHHH----HHHHHHHT-TCCSEEEEEESSHHHH-HHHHH-H-TCS-EEE-EHH
T ss_pred CCCCCCEEEEeCCCh-----------HHHHH----HHHHHHHH-CCCCEEEEEECCHHHH-HHHHH-c-CCC-EEE-chH
Confidence 278999999875321 22322 33445555 5666666665533322 23333 2 332 233 323
Q ss_pred chhHHHHHHHHHHHhCCCc
Q 019713 249 RLDENRAKCQLALKAGVFY 267 (337)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~~ 267 (337)
..-..++...+.+.++.+.
T Consensus 161 ~~~a~~l~~~~~~~~~~~~ 179 (183)
T 3c85_A 161 SEAGSGFARHVCKQLEPQF 179 (183)
T ss_dssp HHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHhcCCcc
Confidence 3333455555666666443
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.035 Score=49.43 Aligned_cols=113 Identities=13% Similarity=0.079 Sum_probs=61.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e---- 168 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ + +++.+.++....++.... .++... .| +.+
T Consensus 13 ~k~vlItGasggiG~~la~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~ 79 (260)
T 3awd_A 13 NRVAIVTGGAQNIGLACVTALAEAGA-----RVII--A--DLDEAMATKAVEDLRMEG----HDVSSVVMDVTNTESVQN 79 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHHhcC----CceEEEEecCCCHHHHHH
Confidence 36899999999999999999998774 2444 2 344455544444443321 122211 11 111
Q ss_pred cc-------CCCcEEEEecccCC--CC--CCch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 LF-------EDAEWALLIGAKPR--GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 al-------~dADvVIitag~pr--k~--g~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+ .+.|+||..+|... .+ ..+. .+.+..|.. +.+...+.+.+. ..+.|++++-
T Consensus 80 ~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~iv~~sS 150 (260)
T 3awd_A 80 AVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQ--KQGVIVAIGS 150 (260)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc--CCCEEEEEec
Confidence 12 36899999888543 11 1111 233455543 334444444443 3457777764
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.042 Score=48.51 Aligned_cols=120 Identities=12% Similarity=0.066 Sum_probs=63.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--cccc----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYEL---- 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~ea---- 169 (337)
++|.|+||+|.+|.+++..|+..+....+....+.+. +++.+.++....++.... .++... .| +.+.
T Consensus 3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~--~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~ 76 (244)
T 2bd0_A 3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLS--SRTAADLEKISLECRAEG----ALTDTITADISDMADVRRL 76 (244)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEE--ESCHHHHHHHHHHHHTTT----CEEEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEE--eCCHHHHHHHHHHHHccC----CeeeEEEecCCCHHHHHHH
Confidence 4799999999999999999998775211001122222 445555554444443211 122221 11 1111
Q ss_pred -------cCCCcEEEEecccCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 170 -------FEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 170 -------l~dADvVIitag~prk~g---~~---R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
+.+.|+||..+|...... .+ ....+..|.. +.+.+.+.+.+. ..+.||+++-.
T Consensus 77 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~isS~ 146 (244)
T 2bd0_A 77 TTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ--HSGHIFFITSV 146 (244)
T ss_dssp HHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC--CCCEEEEEecc
Confidence 237999999988653211 11 1223444533 344445555543 34677777753
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.011 Score=54.88 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=61.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc------hhhHHHhHHHhHhhhccCCcccEEE-ecC--cc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER------SLQALEGVAMELEDSLFPLLREVKI-GIN--PY 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~------~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~ 167 (337)
+||.|+||+|++|++++..|+..+. .|.+....... ..+.++ ++.+.. . .++.. ..| +.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~~~r~~~~~r~~~~~~~~~~----~l~~~~-~--~~~~~~~~D~~~~ 70 (348)
T 1ek6_A 3 EKVLVTGGAGYIGSHTVLELLEAGY-----LPVVIDNFHNAFRGGGSLPESLR----RVQELT-G--RSVEFEEMDILDQ 70 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC-----CEEEEECSSSSCBCSSSSBHHHH----HHHHHH-T--CCCEEEECCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEEEecCCcccccccccHHHHH----HHHhcc-C--CceEEEECCCCCH
Confidence 6899999999999999999998764 24432111110 112221 122111 0 01111 111 11
Q ss_pred ----cccC--CCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 168 ----ELFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 168 ----eal~--dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++++ +.|+||.++|..... ..+..+.+..|+.-...+.+.+.+. .. ..||++|
T Consensus 71 ~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~iv~~S 131 (348)
T 1ek6_A 71 GALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH-GV-KNLVFSS 131 (348)
T ss_dssp HHHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC-CEEEEEE
T ss_pred HHHHHHHHhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHh-CC-CEEEEEC
Confidence 3344 799999988753210 0123346777888888888888774 33 3566655
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.014 Score=52.46 Aligned_cols=110 Identities=12% Similarity=0.048 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cccc---
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL--- 169 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~ea--- 169 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+. +++.++++..+.++. .++.. ..| +.++
T Consensus 5 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~ 68 (254)
T 1hdc_A 5 GKTVIITGGARGLGAEAARQAVAAGA-----RVVLA----DVLDEEGAATARELG-------DAARYQHLDVTIEEDWQR 68 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHTTG-------GGEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhC-------CceeEEEecCCCHHHHHH
Confidence 35899999999999999999998875 24442 444455544333331 11111 111 1121
Q ss_pred --------cCCCcEEEEecccCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 --------FEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 --------l~dADvVIitag~prk~g---~~---R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+.|++|..+|...... .+ -...+..|.. +.+.+.+.+++. ..+.||+++-
T Consensus 69 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS 138 (254)
T 1hdc_A 69 VVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA--GGGSIVNISS 138 (254)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEECc
Confidence 237999999988643211 11 1223445532 345666767664 3467777764
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0089 Score=54.04 Aligned_cols=64 Identities=17% Similarity=0.106 Sum_probs=41.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+|||+ |.||..++..|+..+. .|.+ +|.+++++.++. +.+. . +. ++..+.++++|+|
T Consensus 1 M~I~iIG~-G~mG~~la~~l~~~g~-----~V~~--~~~~~~~~~~~~----~~~~--g----~~--~~~~~~~~~aDvv 60 (264)
T 1i36_A 1 LRVGFIGF-GEVAQTLASRLRSRGV-----EVVT--SLEGRSPSTIER----ARTV--G----VT--ETSEEDVYSCPVV 60 (264)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTC-----EEEE--CCTTCCHHHHHH----HHHH--T----CE--ECCHHHHHTSSEE
T ss_pred CeEEEEec-hHHHHHHHHHHHHCCC-----eEEE--eCCccCHHHHHH----HHHC--C----Cc--CCHHHHHhcCCEE
Confidence 58999995 9999999999988764 2443 343224444432 2211 1 12 3445678999999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
|++.
T Consensus 61 i~~v 64 (264)
T 1i36_A 61 ISAV 64 (264)
T ss_dssp EECS
T ss_pred EEEC
Confidence 9975
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0033 Score=61.00 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=41.0
Q ss_pred CCEEEEEcCCCchHHHHHH-HHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCcccccCCC
Q 019713 96 MVNIAVSGAAGMIANHLLF-KLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~-~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~~eal~dA 173 (337)
|+||+|+||+|.+|..++. .|...++ +.+.++++..+ + .|... .+.. . ..+.+. .++.+.++++
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~----~~v~i~~~~~~-s----~G~~v--~~~~-g--~~i~~~~~~~~~~~~~~ 66 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDF----DAIRPVFFSTS-Q----LGQAA--PSFG-G--TTGTLQDAFDLEALKAL 66 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGG----GGSEEEEEESS-S----TTSBC--CGGG-T--CCCBCEETTCHHHHHTC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCC----CeEEEEEEEeC-C----CCCCc--cccC-C--CceEEEecCChHHhcCC
Confidence 5799999999999999999 5554432 12455555433 1 12111 1000 0 122222 2234557899
Q ss_pred cEEEEecc
Q 019713 174 EWALLIGA 181 (337)
Q Consensus 174 DvVIitag 181 (337)
|+|+++.|
T Consensus 67 DvVf~a~g 74 (367)
T 1t4b_A 67 DIIVTCQG 74 (367)
T ss_dssp SEEEECSC
T ss_pred CEEEECCC
Confidence 99998754
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.047 Score=49.33 Aligned_cols=114 Identities=16% Similarity=0.148 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e---- 168 (337)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.+.. . .++.. ..| +.+
T Consensus 10 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dv~~~~~v~~ 77 (262)
T 3pk0_A 10 GRSVVVTGGTKGIGRGIATVFARAGA-----NVAV----AGRSTADIDACVADLDQLG-S--GKVIGVQTDVSDRAQCDA 77 (262)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTS-S--SCEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhC-C--CcEEEEEcCCCCHHHHHH
Confidence 36899999999999999999999875 2544 2456666666656665422 0 12222 111 112
Q ss_pred -------ccCCCcEEEEecccCC-CC--CCchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -------LFEDAEWALLIGAKPR-GP--GMERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -------al~dADvVIitag~pr-k~--g~~R~---dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|... .+ ..+.. ..+..|+ .+.+...+.+.+. ..+.||+++-
T Consensus 78 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~--~~g~iv~isS 147 (262)
T 3pk0_A 78 LAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIAS--GSGRVVLTSS 147 (262)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--SSCEEEEECC
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEec
Confidence 1237899999988542 22 11222 2344553 3455556666653 3456666654
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.016 Score=55.40 Aligned_cols=73 Identities=26% Similarity=0.273 Sum_probs=42.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+++||+|+||+|.+|..++..|...+. . .+.+..+....+. |..+.+. ..++.+..-+.+.++++|
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~-p---~~elv~i~s~~~~----G~~~~~~------~~~i~~~~~~~~~~~~vD 67 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREF-P---VDELFLLASERSE----GKTYRFN------GKTVRVQNVEEFDWSQVH 67 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTC-C---EEEEEEEECTTTT----TCEEEET------TEEEEEEEGGGCCGGGCS
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCC-C---CEEEEEEECCCCC----CCceeec------CceeEEecCChHHhcCCC
Confidence 468999999999999999998887641 1 1444433221111 1111111 113333322345678999
Q ss_pred EEEEecc
Q 019713 175 WALLIGA 181 (337)
Q Consensus 175 vVIitag 181 (337)
+|+++.|
T Consensus 68 vVf~a~g 74 (336)
T 2r00_A 68 IALFSAG 74 (336)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9998753
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.046 Score=48.38 Aligned_cols=114 Identities=10% Similarity=-0.002 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e---- 168 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ + +++.+.++....++... .++... .| +.+
T Consensus 6 ~k~vlVtGasggiG~~~a~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~ 71 (251)
T 1zk4_A 6 GKVAIITGGTLGIGLAIATKFVEEGA-----KVMI--T--GRHSDVGEKAAKSVGTP-----DQIQFFQHDSSDEDGWTK 71 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHHHHHHHCCT-----TTEEEEECCTTCHHHHHH
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHhhcc-----CceEEEECCCCCHHHHHH
Confidence 35899999999999999999998774 2443 2 34444444333333211 122221 11 111
Q ss_pred -------ccCCCcEEEEecccCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 169 -------LFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 169 -------al~dADvVIitag~prk~g---~~---R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
.+...|+||..+|...... .+ ....+..|.. +.+.+.+.+.+. ...+.||+++..
T Consensus 72 ~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~~iv~isS~ 143 (251)
T 1zk4_A 72 LFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNK-GLGASIINMSSI 143 (251)
T ss_dssp HHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS-SSCEEEEEECCG
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-CCCCEEEEeCCc
Confidence 1235899999888643211 11 1234566654 455555656553 222677787753
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0084 Score=55.79 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=43.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+|+||+|+||+|.||..++..+...+- +.|.-. +|++.....| .|+.+.. .....+.++.+..+.++++|
T Consensus 6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~------~eLv~~-~d~~~~~~~G--~d~gel~-g~~~gv~v~~dl~~ll~~~D 75 (272)
T 4f3y_A 6 SSMKIAIAGASGRMGRMLIEAVLAAPD------ATLVGA-LDRTGSPQLG--QDAGAFL-GKQTGVALTDDIERVCAEAD 75 (272)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHHCTT------EEEEEE-BCCTTCTTTT--SBTTTTT-TCCCSCBCBCCHHHHHHHCS
T ss_pred cccEEEEECCCCHHHHHHHHHHHhCCC------CEEEEE-EEecCccccc--ccHHHHh-CCCCCceecCCHHHHhcCCC
Confidence 368999999889999999998876442 333221 2333222222 2232221 11124445555556678899
Q ss_pred EEEEe
Q 019713 175 WALLI 179 (337)
Q Consensus 175 vVIit 179 (337)
+||-.
T Consensus 76 VVIDf 80 (272)
T 4f3y_A 76 YLIDF 80 (272)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99864
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.012 Score=52.06 Aligned_cols=43 Identities=26% Similarity=0.208 Sum_probs=30.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHH
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM 147 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~ 147 (337)
|++|.|+||+|.+|.+++..|+..|. .|.+ .+++.++++....
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~ 43 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGK-----ATYL----TGRSESKLSTVTN 43 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTC-----CEEE----EESCHHHHHHHHH
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHH
Confidence 35699999999999999999999885 2544 2455566554433
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.073 Score=47.68 Aligned_cols=117 Identities=13% Similarity=0.039 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec--Ccc------
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPY------ 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t--~~~------ 167 (337)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.++++..+.++.+.......-+..-. .+.
T Consensus 12 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 82 (252)
T 3f1l_A 12 DRIILVTGASDGIGREAAMTYARYGA-----TVIL----LGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQL 82 (252)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHH
Confidence 35899999999999999999998875 2444 245556666555555433211000011000 111
Q ss_pred -----cccCCCcEEEEecccC--CCCC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 -----ELFEDAEWALLIGAKP--RGPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 -----eal~dADvVIitag~p--rk~g--~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|.. ..+- .+. ...+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 83 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~--~~g~iv~isS 152 (252)
T 3f1l_A 83 AQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKS--DAGSLVFTSS 152 (252)
T ss_dssp HHHHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTS--SSCEEEEECC
T ss_pred HHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHC--CCCEEEEECC
Confidence 1234789999998853 2221 122 123455533 445555656653 4567777764
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.12 Score=47.04 Aligned_cols=116 Identities=12% Similarity=0.131 Sum_probs=66.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--cccc---
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYEL--- 169 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~ea--- 169 (337)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... ....++... .| +.+.
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~~Dv~~~~~v~~ 80 (281)
T 3svt_A 11 DRTYLVTGGGSGIGKGVAAGLVAAGA-----SVMI----VGRNPDKLAGAVQELEALG-ANGGAIRYEPTDITNEDETAR 80 (281)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTC-CSSCEEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhC-CCCceEEEEeCCCCCHHHHHH
Confidence 35899999999999999999998875 2544 2456666666655565432 111122221 11 1111
Q ss_pred --------cCCCcEEEEecccCCCCC----Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 --------FEDAEWALLIGAKPRGPG----MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 --------l~dADvVIitag~prk~g----~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+...|++|..+|.....+ .+. ...+..|+. +.+...+.+.+ ...+.||+++-
T Consensus 81 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~--~~~g~iv~isS 151 (281)
T 3svt_A 81 AVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVR--GGGGSFVGISS 151 (281)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh--cCCcEEEEEeC
Confidence 236799999888522111 111 223555543 44555566655 34667777763
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.12 Score=46.25 Aligned_cols=113 Identities=12% Similarity=0.041 Sum_probs=63.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e---- 168 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ . +++.+.++....++.... .++.. ..| +.+
T Consensus 9 ~k~vlVTGas~giG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 75 (260)
T 2ae2_A 9 GCTALVTGGSRGIGYGIVEELASLGA-----SVYT--C--SRNQKELNDCLTQWRSKG----FKVEASVCDLSSRSERQE 75 (260)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHHHHHHHHHTT----CEEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHH
Confidence 35899999999999999999998775 2444 2 445555554444443211 12221 111 111
Q ss_pred -------cc-CCCcEEEEecccCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -------LF-EDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -------al-~dADvVIitag~prk~g---~~---R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+ ...|++|..+|...... .+ ....+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 76 ~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS 146 (260)
T 2ae2_A 76 LMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS--ERGNVVFISS 146 (260)
T ss_dssp HHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--SSEEEEEECC
T ss_pred HHHHHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEcc
Confidence 12 57999999988643211 11 1223445533 344444555553 4567777774
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.019 Score=51.51 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecC-------ccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-------PYE 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~-------~~e 168 (337)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.........++.-..+ -.+
T Consensus 6 gk~vlVTGas~gIG~a~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (247)
T 3rwb_A 6 GKTALVTGAAQGIGKAIAARLAADGA-----TVIV----SDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQA 76 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999875 2444 2455555554443331111000001000000 011
Q ss_pred ccCCCcEEEEecccCC-CCC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 LFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 al~dADvVIitag~pr-k~g--~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|... .+- .+. ...+..|+. +.+...+.+.+. ...+.||+++-
T Consensus 77 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~iv~isS 140 (247)
T 3rwb_A 77 LTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAA-GKAGRVISIAS 140 (247)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECC
T ss_pred HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCcEEEEECc
Confidence 2337899999888542 221 111 223445533 455555667664 44567777764
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.072 Score=48.66 Aligned_cols=114 Identities=16% Similarity=0.105 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~--~~e---- 168 (337)
.++|.|+||+|.||.+++..|+..|. .|.+. +++.+.++..+.++.... . ++. +..| +.+
T Consensus 32 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~-~---~~~~~~~Dl~d~~~v~~ 98 (276)
T 3r1i_A 32 GKRALITGASTGIGKKVALAYAEAGA-----QVAVA----ARHSDALQVVADEIAGVG-G---KALPIRCDVTQPDQVRG 98 (276)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE----ESSGGGGHHHHHHHHHTT-C---CCEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC-C---eEEEEEcCCCCHHHHHH
Confidence 35899999999999999999999875 25442 445555555555554322 1 111 1111 111
Q ss_pred -------ccCCCcEEEEecccCCCCC---Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -------LFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -------al~dADvVIitag~prk~g---~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|...... .+. ...+..|+ .+.+...+.+.+. ..++.||+++-
T Consensus 99 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~~g~iv~isS 169 (276)
T 3r1i_A 99 MLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQ-GLGGTIITTAS 169 (276)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcEEEEECc
Confidence 1237899999988643221 111 12344453 3455566666654 34467777764
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.064 Score=48.96 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=47.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc-
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE- 168 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e- 168 (337)
|.+.++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... .++... .| +.+
T Consensus 21 m~~~k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~ 87 (279)
T 3sju_A 21 MSRPQTAFVTGVSSGIGLAVARTLAARGI-----AVYG----CARDAKNVSAAVDGLRAAG----HDVDGSSCDVTSTDE 87 (279)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTT----CCEEEEECCTTCHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHH
Confidence 34456899999999999999999999875 2443 2455566665555554321 122221 11 111
Q ss_pred ----------ccCCCcEEEEecccC
Q 019713 169 ----------LFEDAEWALLIGAKP 183 (337)
Q Consensus 169 ----------al~dADvVIitag~p 183 (337)
.+...|++|..+|..
T Consensus 88 v~~~~~~~~~~~g~id~lv~nAg~~ 112 (279)
T 3sju_A 88 VHAAVAAAVERFGPIGILVNSAGRN 112 (279)
T ss_dssp HHHHHHHHHHHHCSCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCC
Confidence 223679999998864
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.05 Score=49.71 Aligned_cols=114 Identities=12% Similarity=0.102 Sum_probs=61.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--cccc----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYEL---- 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~ea---- 169 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... . .++... .| +.+.
T Consensus 27 k~vlITGasggiG~~la~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dl~~~~~~~~~ 94 (302)
T 1w6u_A 27 KVAFITGGGTGLGKGMTTLLSSLGA-----QCVI----ASRKMDVLKATAEQISSQT-G--NKVHAIQCDVRDPDMVQNT 94 (302)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHH-S--SCEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhc-C--CceEEEEeCCCCHHHHHHH
Confidence 5899999999999999999998875 2444 2445555554444444321 1 122221 11 1111
Q ss_pred -------cCCCcEEEEecccCCC-C--CCc---hhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 -------FEDAEWALLIGAKPRG-P--GME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 -------l~dADvVIitag~prk-~--g~~---R~dll~~N~~I----~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+...|+||..+|.... + ..+ ....+..|+.- .+...+.+.+. ...+.||+++-
T Consensus 95 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~~iv~isS 164 (302)
T 1w6u_A 95 VSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKA-QKGAAFLSITT 164 (302)
T ss_dssp HHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEECC
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-cCCCEEEEEcc
Confidence 2345999999885421 1 111 12334555443 34444444422 34567777764
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.011 Score=52.02 Aligned_cols=111 Identities=20% Similarity=0.135 Sum_probs=60.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcc---------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY--------- 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~--------- 167 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ + +++.+.++....++.... -+..--.+.
T Consensus 6 k~vlVtGasggiG~~~a~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~-----~~~~D~~~~~~~~~~~~~ 71 (234)
T 2ehd_A 6 GAVLITGASRGIGEATARLLHAKGY-----RVGL--M--ARDEKRLQALAAELEGAL-----PLPGDVREEGDWARAVAA 71 (234)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHHHHHHSTTCE-----EEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEE--E--ECCHHHHHHHHHHhhhce-----EEEecCCCHHHHHHHHHH
Confidence 4799999999999999999998775 2443 2 344444443322221100 000000111
Q ss_pred --cccCCCcEEEEecccCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 --ELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 --eal~dADvVIitag~prk~g---~~---R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+.+.|++|..+|...... .+ -.+.+..|.. +.+.+.+.+.+. ..+.||+++-
T Consensus 72 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~~~~iv~isS 137 (234)
T 2ehd_A 72 MEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR--GGGTIVNVGS 137 (234)
T ss_dssp HHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--TCEEEEEECC
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCcEEEEECC
Confidence 12347899999888543111 11 1233455543 334555656553 4567777774
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0044 Score=56.82 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++||.|+||+|++|++++..|+..+.
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~ 29 (313)
T 1qyd_A 3 KKSRVLIVGGTGYIGKRIVNASISLGH 29 (313)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhCCC
Confidence 457899999999999999999998763
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0038 Score=56.84 Aligned_cols=99 Identities=16% Similarity=0.086 Sum_probs=59.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC--Cc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--AE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d--AD 174 (337)
|||.|+||+|++|++++..|. .+. .|.. + +++... ...|+.|.. ...+++++ +|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~-----~V~~--~--~r~~~~---~~~D~~d~~-----------~~~~~~~~~~~d 56 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVG-----NLIA--L--DVHSKE---FCGDFSNPK-----------GVAETVRKLRPD 56 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTS-----EEEE--E--CTTCSS---SCCCTTCHH-----------HHHHHHHHHCCS
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCC-----eEEE--e--cccccc---ccccCCCHH-----------HHHHHHHhcCCC
Confidence 489999999999999999988 553 2433 2 222211 112222211 11234444 99
Q ss_pred EEEEecccCCC--CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 175 WALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 175 vVIitag~prk--~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+||.+++.... ...+..+....|+.-...+.+.+.+. ++++|.+|
T Consensus 57 ~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~---~~~~v~~S 103 (299)
T 1n2s_A 57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANET---GAWVVHYS 103 (299)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT---TCEEEEEE
T ss_pred EEEECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHc---CCcEEEEe
Confidence 99998875321 11233456778888888888887764 23666665
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.035 Score=49.53 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc-hhhHHHhHHHhHhhhccCCcccEEE-ecC--cccc--
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL-- 169 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~-~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~ea-- 169 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+. ++ +.++++..+.++.... .++.. ..| +.++
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~ 70 (246)
T 2uvd_A 4 GKVALVTGASRGIGRAIAIDLAKQGA-----NVVVN----YAGNEQKANEVVDEIKKLG----SDAIAVRADVANAEDVT 70 (246)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE----ESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----eCCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHH
Confidence 35799999999999999999998775 24432 23 4445544444443221 12221 111 1211
Q ss_pred ---------cCCCcEEEEecccCCCCC---Cc---hhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 ---------FEDAEWALLIGAKPRGPG---ME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 ---------l~dADvVIitag~prk~g---~~---R~dll~~N~~I----~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+.|++|..+|...... .+ -...+..|..- .+.+.+.+.+. ..+.||+++-
T Consensus 71 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS 141 (246)
T 2uvd_A 71 NMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQ--RHGRIVNIAS 141 (246)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECC
Confidence 237899999988653211 11 12335555433 55566666654 3467777774
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.015 Score=51.77 Aligned_cols=110 Identities=21% Similarity=0.181 Sum_probs=61.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccE-E-EecC--cccc--
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREV-K-IGIN--PYEL-- 169 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v-~-i~t~--~~ea-- 169 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ + +++.++++....++.. ++ . +..| +.+.
T Consensus 11 ~k~vlITGasggiG~~la~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~ 74 (254)
T 2wsb_A 11 GACAAVTGAGSGIGLEICRAFAASGA-----RLIL--I--DREAAALDRAAQELGA-------AVAARIVADVTDAEAMT 74 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHHHHHHHGG-------GEEEEEECCTTCHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHhcc-------cceeEEEEecCCHHHHH
Confidence 35899999999999999999998774 2443 2 4454555443333311 11 1 1111 1111
Q ss_pred --------cCCCcEEEEecccCCCCC---Cc---hhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 --------FEDAEWALLIGAKPRGPG---ME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 --------l~dADvVIitag~prk~g---~~---R~dll~~N~~I----~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+.|+||..+|...... .+ -.+.+..|..- .+.+.+.+.+. ..+.||+++.
T Consensus 75 ~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~~~iv~isS 144 (254)
T 2wsb_A 75 AAAAEAEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVAR--GAGAIVNLGS 144 (254)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEec
Confidence 257899999988643211 11 12334455433 45555556554 3457777765
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.009 Score=54.77 Aligned_cols=112 Identities=21% Similarity=0.225 Sum_probs=63.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecC--cc-------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PY------- 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~--~~------- 167 (337)
++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... ..+..| +.
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~------~~~~~Dv~d~~~v~~~~ 93 (272)
T 4dyv_A 29 KIAIVTGAGSGVGRAVAVALAGAGY-----GVAL----AGRRLDALQETAAEIGDDA------LCVPTDVTDPDSVRALF 93 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHTSCC------EEEECCTTSHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhCCCe------EEEEecCCCHHHHHHHH
Confidence 4678889999999999999999875 2444 2455556555444432110 001111 11
Q ss_pred ----cccCCCcEEEEecccCCC--CC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ----ELFEDAEWALLIGAKPRG--PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 ----eal~dADvVIitag~prk--~g--~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|.... +- .+. ...+..|+. +.+...+.+.+...+.+.||+++-
T Consensus 94 ~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS 164 (272)
T 4dyv_A 94 TATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGS 164 (272)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECC
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECc
Confidence 223379999999886422 21 111 233455533 456666666664212567788774
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.078 Score=47.58 Aligned_cols=113 Identities=13% Similarity=0.081 Sum_probs=62.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc-----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----- 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e----- 168 (337)
++|.|+||+|.+|.+++..|+..|. .|.+. +++.++++..+.++.... . .++.. ..| +.+
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~-~--~~~~~~~~D~~~~~~~~~~ 75 (263)
T 3ai3_A 8 KVAVITGSSSGIGLAIAEGFAKEGA-----HIVLV----ARQVDRLHEAARSLKEKF-G--VRVLEVAVDVATPEGVDAV 75 (263)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHHH-C--CCEEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----cCCHHHHHHHHHHHHHhc-C--CceEEEEcCCCCHHHHHHH
Confidence 5799999999999999999998875 24442 445555554444443220 0 11221 111 111
Q ss_pred ------ccCCCcEEEEecccCCC-C--CCch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 ------LFEDAEWALLIGAKPRG-P--GMER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 ------al~dADvVIitag~prk-~--g~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+.|++|..+|.... + ..+. ...+..|. .+.+...+.+.+. ..+.||+++-
T Consensus 76 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~isS 144 (263)
T 3ai3_A 76 VESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRAR--GGGAIIHNAS 144 (263)
T ss_dssp HHHHHHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECc
Confidence 12378999999886431 1 1121 12344443 3445555555553 3457777764
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.013 Score=53.72 Aligned_cols=110 Identities=9% Similarity=0.015 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC--cc-----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----- 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~--~~----- 167 (337)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.. ++. +..| +.
T Consensus 27 ~k~vlVTGas~GIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~-------~~~~~~~Dv~d~~~v~~ 90 (277)
T 4dqx_A 27 QRVCIVTGGGSGIGRATAELFAKNGA-----YVVV----ADVNEDAAVRVANEIGS-------KAFGVRVDVSSAKDAES 90 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHCT-------TEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCC-------ceEEEEecCCCHHHHHH
Confidence 35789999999999999999999875 2444 24455555544333211 111 1111 11
Q ss_pred ------cccCCCcEEEEecccCCC-C--CCch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ------ELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 ------eal~dADvVIitag~prk-~--g~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|.... + ..+. ...+..|+. +.+...+.+.+. ..+.||+++-
T Consensus 91 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~~g~iv~isS 160 (277)
T 4dqx_A 91 MVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRN--GGGSIINTTS 160 (277)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT--TCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCcEEEEECc
Confidence 123378999999885432 1 1111 223445543 344555555542 4567777774
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0024 Score=60.00 Aligned_cols=113 Identities=12% Similarity=0.017 Sum_probs=63.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--c----cc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P----YE 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~----~e 168 (337)
.++|.|+||+|++|++++..|+..+. .|.+ + +++.+........+.. ..++.. ..| + .+
T Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~~~~ 74 (357)
T 1rkx_A 9 GKRVFVTGHTGFKGGWLSLWLQTMGA-----TVKG--Y--SLTAPTVPSLFETARV-----ADGMQSEIGDIRDQNKLLE 74 (357)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESSCSSSSCHHHHTTT-----TTTSEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-----eEEE--E--eCCCcccchhhHhhcc-----CCceEEEEccccCHHHHHH
Confidence 46999999999999999999998764 2433 2 2222221111111110 011111 111 1 13
Q ss_pred ccCC--CcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 LFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 al~d--ADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
++++ .|+||.++|.+... ..+..+.+..|+.-...+.+.+.+. .....||++|-
T Consensus 75 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~SS 132 (357)
T 1rkx_A 75 SIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHV-GGVKAVVNITS 132 (357)
T ss_dssp HHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-CCCCEEEEECC
T ss_pred HHHhcCCCEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEecC
Confidence 3444 79999998754211 1122345677877777788877775 32346666664
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.12 Score=47.59 Aligned_cols=117 Identities=11% Similarity=0.042 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-C--cc-----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--PY----- 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~--~~----- 167 (337)
.++|.|+||+|.||.+++..|+..|. .|.+ .+.+...+.++....++++.. .++.... | +.
T Consensus 49 ~k~vlVTGas~GIG~aia~~la~~G~-----~V~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~ 117 (294)
T 3r3s_A 49 DRKALVTGGDSGIGRAAAIAYAREGA-----DVAI--NYLPAEEEDAQQVKALIEECG----RKAVLLPGDLSDESFARS 117 (294)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--ECCGGGHHHHHHHHHHHHHTT----CCEEECCCCTTSHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE--EeCCcchhHHHHHHHHHHHcC----CcEEEEEecCCCHHHHHH
Confidence 35899999999999999999999875 2444 333323333443333333221 1222211 1 11
Q ss_pred ------cccCCCcEEEEecccCCCCC----Cc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ------ELFEDAEWALLIGAKPRGPG----ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 ------eal~dADvVIitag~prk~g----~~---R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|.....+ .+ -...+..|+.-...+.+.+...-..++.||+++-
T Consensus 118 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS 186 (294)
T 3r3s_A 118 LVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS 186 (294)
T ss_dssp HHHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 12347899999988643111 11 1234666765555566665554344567777774
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.065 Score=47.50 Aligned_cols=114 Identities=15% Similarity=0.067 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e---- 168 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.+.. .++... .| +.+
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 71 (247)
T 3lyl_A 5 EKVALVTGASRGIGFEVAHALASKGA-----TVVG----TATSQASAEKFENSMKEKG----FKARGLVLNISDIESIQN 71 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CceEEEEecCCCHHHHHH
Confidence 45899999999999999999999875 2444 2445555555544454322 122211 11 111
Q ss_pred -------ccCCCcEEEEecccCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 169 -------LFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 169 -------al~dADvVIitag~prk~g---~~---R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
.+...|++|..+|...... .+ -...+..|.. +.+...+.+.+. ..+.||+++-.
T Consensus 72 ~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~g~iv~isS~ 142 (247)
T 3lyl_A 72 FFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKK--RWGRIISIGSV 142 (247)
T ss_dssp HHHHHHHTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCT
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCeEEEEEcch
Confidence 1235799999988653211 11 1223444533 345555555553 45677777753
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.013 Score=56.08 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
++||+|+||+|.+|..++..|...+
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~ 30 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERD 30 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCC
Confidence 4799999999999999999887543
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0081 Score=56.42 Aligned_cols=117 Identities=8% Similarity=-0.006 Sum_probs=59.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHH-hHHHhHhhhccCCcccEEEecC---cc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGIN---PY---- 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~-g~a~DL~d~~~~~~~~v~i~t~---~~---- 167 (337)
|++|.|+||+|.||++++..|+..+. .|.+ ++ ++.+... ....++.+.......++..... +.
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 71 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGY-----EVHG--IK--RRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLT 71 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EC--C---------------------CCEEECCCCSSCHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE--EE--CCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHH
Confidence 46899999999999999999998763 2433 22 2221110 0001111000000012222111 11
Q ss_pred cccCC--CcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCC--CeEEEEeC
Q 019713 168 ELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASR--NVKVIVVG 222 (337)
Q Consensus 168 eal~d--ADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p--~aivIvvt 222 (337)
+.+++ .|+||.++|..... ..+....+..|+.-...+.+.+.+. .. ...||++|
T Consensus 72 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~~iv~~S 131 (372)
T 1db3_A 72 RILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFL-GLEKKTRFYQAS 131 (372)
T ss_dssp HHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHT-TCTTTCEEEEEE
T ss_pred HHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHh-CCCCCcEEEEeC
Confidence 23443 69999988754321 1223345667877777788877775 22 14666665
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.075 Score=47.60 Aligned_cols=113 Identities=13% Similarity=0.133 Sum_probs=63.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc----c
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----L 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e----a 169 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++.... .++.. ..| +.+ .
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~ 69 (256)
T 1geg_A 3 KVALVTGAGQGIGKAIALRLVKDGF-----AVAI----ADYNDATAKAVASEINQAG----GHAVAVKVDVSDRDQVFAA 69 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHHH
Confidence 4789999999999999999999875 2444 2445555554444444321 11211 111 111 1
Q ss_pred -------cCCCcEEEEecccCCC-CC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 -------FEDAEWALLIGAKPRG-PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 -------l~dADvVIitag~prk-~g--~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+...|++|..+|.... +- .+. ...+..|.. +.+...+.+.+. ...+.||+++-
T Consensus 70 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~iv~isS 139 (256)
T 1geg_A 70 VEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKE-GHGGKIINACS 139 (256)
T ss_dssp HHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECC
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCCEEEEECc
Confidence 2378999998885421 11 111 123445533 455566666654 32467777764
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.03 Score=55.42 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=65.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccC------------CcccEE
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP------------LLREVK 161 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~------------~~~~v~ 161 (337)
.++++|.|+||+|++|++++..|+..+-.+. .|.+ ++ ++.+...+. ..+.+.... ...++.
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~--~V~~--l~--R~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~v~ 143 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDG--RLIC--LV--RAESDEDAR-RRLEKTFDSGDPELLRHFKELAADRLE 143 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTTC--EEEE--EE--CSSSHHHHH-HHHHGGGCSSCHHHHHHHHHHHTTTEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCCC--EEEE--EE--CCCCcHHHH-HHHHHHHHhcchhhhhhhhhhccCceE
Confidence 4578999999999999999999987632111 2433 22 221111111 111111100 012333
Q ss_pred EecCc-------------ccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 162 IGINP-------------YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 162 i~t~~-------------~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+...| .+.++++|+||.+++.... ....+.+..|+.-...+.+.+.+. ... .+|++|
T Consensus 144 ~v~~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~-~~~-~~V~iS 213 (478)
T 4dqv_A 144 VVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTT-KLK-PFTYVS 213 (478)
T ss_dssp EEECCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSS-SCC-CEEEEE
T ss_pred EEEeECCCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhC-CCC-eEEEEe
Confidence 32222 2345689999999876432 233356788888888888887764 333 455555
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.054 Score=48.74 Aligned_cols=113 Identities=12% Similarity=0.146 Sum_probs=64.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc-----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----- 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e----- 168 (337)
++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++....++.+.. .++.. ..| +.+
T Consensus 7 k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~ 73 (257)
T 3imf_A 7 KVVIITGGSSGMGKGMATRFAKEGA-----RVVI----TGRTKEKLEEAKLEIEQFP----GQILTVQMDVRNTDDIQKM 73 (257)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCCST----TCEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHH
Confidence 5789999999999999999999875 2444 2455666665555554321 12221 111 111
Q ss_pred ------ccCCCcEEEEecccCCC-CC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 ------LFEDAEWALLIGAKPRG-PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 ------al~dADvVIitag~prk-~g--~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|.... +- .+. ...+..|+. +.+...+.+.+. ...+.||+++-
T Consensus 74 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~g~iv~isS 143 (257)
T 3imf_A 74 IEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEK-GIKGNIINMVA 143 (257)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCEEEEECC
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhh-CCCcEEEEECc
Confidence 12368999998885432 21 111 123445543 344555555343 34567777764
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=96.01 E-value=0.011 Score=53.48 Aligned_cols=99 Identities=21% Similarity=0.200 Sum_probs=56.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc--CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--cC---cccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAG--EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--IN---PYEL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~--~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t~---~~ea 169 (337)
+||.|+||+|++|++++..|+.. +. .|... +++.+++.. +.+.. ..+... ++ ..++
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~-----~V~~~----~r~~~~~~~----l~~~~----~~~~~~D~~d~~~l~~~ 63 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPAS-----QIIAI----VRNVEKAST----LADQG----VEVRHGDYNQPESLQKA 63 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGG-----GEEEE----ESCTTTTHH----HHHTT----CEEEECCTTCHHHHHHH
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCC-----eEEEE----EcCHHHHhH----HhhcC----CeEEEeccCCHHHHHHH
Confidence 47999999999999999999875 43 24432 233333221 11100 011111 11 2356
Q ss_pred cCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 170 l~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++++|+||.+++.. ++ . ..|..-.+.+.+.+.+. ... .+|.+|
T Consensus 64 ~~~~d~vi~~a~~~--~~--~----~~n~~~~~~l~~a~~~~-~~~-~~v~~S 106 (287)
T 2jl1_A 64 FAGVSKLLFISGPH--YD--N----TLLIVQHANVVKAARDA-GVK-HIAYTG 106 (287)
T ss_dssp TTTCSEEEECCCCC--SC--H----HHHHHHHHHHHHHHHHT-TCS-EEEEEE
T ss_pred HhcCCEEEEcCCCC--cC--c----hHHHHHHHHHHHHHHHc-CCC-EEEEEC
Confidence 88999999988742 11 1 34666667777777764 322 555555
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.068 Score=48.49 Aligned_cols=114 Identities=17% Similarity=0.171 Sum_probs=62.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e---- 168 (337)
.++|.|+||+|.||.+++..|+..|. .|.+. +++.+.++..+.++.... . .++.. ..| +.+
T Consensus 21 ~k~~lVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dl~~~~~v~~ 88 (267)
T 1vl8_A 21 GRVALVTGGSRGLGFGIAQGLAEAGC-----SVVVA----SRNLEEASEAAQKLTEKY-G--VETMAFRCDVSNYEEVKK 88 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHHH-C--CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHHhc-C--CeEEEEEcCCCCHHHHHH
Confidence 35799999999999999999999875 24442 445555554444442111 1 11211 111 111
Q ss_pred -------ccCCCcEEEEecccCCCCC---Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -------al~dADvVIitag~prk~g---~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|...... .+. ...+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 89 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~--~~g~iv~isS 158 (267)
T 1vl8_A 89 LLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRES--DNPSIINIGS 158 (267)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC--SSCEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCcEEEEECC
Confidence 1237899999988643211 111 223445543 334444555442 3456777764
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.031 Score=51.03 Aligned_cols=113 Identities=16% Similarity=0.063 Sum_probs=62.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc-----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----- 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e----- 168 (337)
++|.|+||+|.+|.+++..|+..+. .|.+ .+++.+.++....++.... .++.. ..| +.+
T Consensus 45 k~vlITGasggIG~~la~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~d~~~v~~~ 111 (285)
T 2c07_A 45 KVALVTGAGRGIGREIAKMLAKSVS-----HVIC----ISRTQKSCDSVVDEIKSFG----YESSGYAGDVSKKEEISEV 111 (285)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTTSS-----EEEE----EESSHHHHHHHHHHHHTTT----CCEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCC-----EEEE----EcCCHHHHHHHHHHHHhcC----CceeEEECCCCCHHHHHHH
Confidence 5899999999999999999988764 2443 2344455554444444321 12221 111 111
Q ss_pred ------ccCCCcEEEEecccCCCCC---Cc---hhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 169 ------LFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 169 ------al~dADvVIitag~prk~g---~~---R~dll~~N~~I----~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
.+.+.|+||..+|...... .+ ..+.+..|+.- .+.+.+.+.+. ..+.||+++-.
T Consensus 112 ~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~~~iv~isS~ 181 (285)
T 2c07_A 112 INKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN--RYGRIINISSI 181 (285)
T ss_dssp HHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH--TCEEEEEECCT
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC--CCCEEEEECCh
Confidence 1247899999988643211 11 12334455433 45555555553 34577777753
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.065 Score=43.43 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHH
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE 143 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~ 143 (337)
++++|.|+|+ |.+|.+++..|...+. .+.+ +|.++++++
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g~-----~V~~----id~~~~~~~ 43 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAGK-----KVLA----VDKSKEKIE 43 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTC-----CEEE----EESCHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-----eEEE----EECCHHHHH
Confidence 3568999996 9999999999998775 2544 345555554
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.034 Score=44.54 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+.+|.|+|+ |.+|..++..|...+.
T Consensus 6 ~~~v~I~G~-G~iG~~~a~~l~~~g~ 30 (144)
T 2hmt_A 6 NKQFAVIGL-GRFGGSIVKELHRMGH 30 (144)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCC
Confidence 457999996 9999999999988764
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0033 Score=54.16 Aligned_cols=113 Identities=16% Similarity=0.122 Sum_probs=61.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC---CC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---DA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~---dA 173 (337)
++|.|+||+|.+|.+++..|+.. .|.+ + +++.++++....++.. . ....++.-..+-.+.++ +.
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~-------~V~~--~--~r~~~~~~~~~~~~~~-~-~~~~D~~~~~~~~~~~~~~~~i 67 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH-------DLLL--S--GRRAGALAELAREVGA-R-ALPADLADELEAKALLEEAGPL 67 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS-------EEEE--E--CSCHHHHHHHHHHHTC-E-ECCCCTTSHHHHHHHHHHHCSE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC-------CEEE--E--ECCHHHHHHHHHhccC-c-EEEeeCCCHHHHHHHHHhcCCC
Confidence 47999999999999999998764 1443 2 4444554433322211 0 00000000000112233 79
Q ss_pred cEEEEecccCCCC------CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 174 EWALLIGAKPRGP------GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 174 DvVIitag~prk~------g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
|+||.++|..... ..+....+..|..-...+.+.+.+ ...+.||+++-.
T Consensus 68 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~--~~~~~iv~~sS~ 122 (207)
T 2yut_A 68 DLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARF--QKGARAVFFGAY 122 (207)
T ss_dssp EEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCE--EEEEEEEEECCC
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHh--cCCcEEEEEcCh
Confidence 9999998864321 112234566776666666666533 234577777753
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.085 Score=47.09 Aligned_cols=111 Identities=15% Similarity=0.143 Sum_probs=63.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc-----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----- 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e----- 168 (337)
+++.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++.... .++.. ..| +.+
T Consensus 8 k~~lVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~~~~~~~~~ 74 (247)
T 2jah_A 8 KVALITGASSGIGEATARALAAEGA-----AVAI----AARRVEKLRALGDELTAAG----AKVHVLELDVADRQGVDAA 74 (247)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHHH
Confidence 5899999999999999999999875 2444 2445555555544454321 12221 111 122
Q ss_pred ------ccCCCcEEEEecccCCC-C--CCch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 ------LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 ------al~dADvVIitag~prk-~--g~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|.... + ..+. ...+..|.. +.+...+.+.+. . +.||+++-
T Consensus 75 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~--g~iv~isS 142 (247)
T 2jah_A 75 VASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRS-K--GTVVQMSS 142 (247)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-T--CEEEEECC
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC-C--CEEEEEcc
Confidence 23478999999886432 1 1121 123455533 444555555553 2 57777764
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.047 Score=48.94 Aligned_cols=114 Identities=13% Similarity=0.034 Sum_probs=60.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e---- 168 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ + +++.+.++....++.... .++... .| +.+
T Consensus 14 ~k~vlITGasggiG~~la~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 80 (266)
T 1xq1_A 14 AKTVLVTGGTKGIGHAIVEEFAGFGA-----VIHT--C--ARNEYELNECLSKWQKKG----FQVTGSVCDASLRPEREK 80 (266)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHHhcC----CeeEEEECCCCCHHHHHH
Confidence 36899999999999999999998874 2443 2 344455554444443321 122211 11 111
Q ss_pred cc--------CCCcEEEEecccCCC-C--CCc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 169 LF--------EDAEWALLIGAKPRG-P--GME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 169 al--------~dADvVIitag~prk-~--g~~---R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
.+ ...|+||..+|.... + ..+ -...+..|.. +.+...+.+.+. ..+.||+++-.
T Consensus 81 ~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~--~~~~iv~isS~ 152 (266)
T 1xq1_A 81 LMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS--GCGNIIFMSSI 152 (266)
T ss_dssp HHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SSCEEEEEC--
T ss_pred HHHHHHHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEccc
Confidence 11 578999998885421 1 111 1233555554 334444444553 34567777653
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.062 Score=48.34 Aligned_cols=113 Identities=12% Similarity=0.085 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e---- 168 (337)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.+.. .++.. ..| +.+
T Consensus 12 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~ 78 (256)
T 3gaf_A 12 DAVAIVTGAAAGIGRAIAGTFAKAGA-----SVVV----TDLKSEGAEAVAAAIRQAG----GKAIGLECNVTDEQHREA 78 (256)
T ss_dssp TCEEEECSCSSHHHHHHHHHHHHHTC-----EEEE----EESSHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHH
Confidence 35899999999999999999998875 2444 2455566665555554322 12221 111 111
Q ss_pred -------ccCCCcEEEEecccCCC-C-CCchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -------LFEDAEWALLIGAKPRG-P-GMERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -------al~dADvVIitag~prk-~-g~~R~---dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|.... + ..+.. ..+..|. .+.+...+.+.+. ..+.||+++-
T Consensus 79 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS 147 (256)
T 3gaf_A 79 VIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKA--GGGAILNISS 147 (256)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEcC
Confidence 12378999999885432 1 12211 2344453 3455555656553 4567788774
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.028 Score=50.36 Aligned_cols=115 Identities=13% Similarity=0.068 Sum_probs=63.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc-hhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc---
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~-~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e--- 168 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+. ++ +.+.++....++.... .++.. ..| +.+
T Consensus 21 ~k~vlItGasggiG~~la~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~ 87 (274)
T 1ja9_A 21 GKVALTTGAGRGIGRGIAIELGRRGA-----SVVVN----YGSSSKAAEEVVAELKKLG----AQGVAIQADISKPSEVV 87 (274)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE----ESSCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----cCCchHHHHHHHHHHHhcC----CcEEEEEecCCCHHHHH
Confidence 35899999999999999999998874 24432 22 3444444434444321 12221 111 111
Q ss_pred -cc-------CCCcEEEEecccCCCCC---Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -LF-------EDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -al-------~dADvVIitag~prk~g---~~R---~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+ .+.|+||..+|...... .+. .+.+..|..-...+.+.+.+....++.||+++-
T Consensus 88 ~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS 156 (274)
T 1ja9_A 88 ALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS 156 (274)
T ss_dssp HHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcC
Confidence 22 27899999887643111 111 234556655555555555444222357777764
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.012 Score=57.26 Aligned_cols=71 Identities=11% Similarity=0.117 Sum_probs=41.5
Q ss_pred CEEEEEcCCCchHHHHHH-HHHHcCCCCCCCceEEEeccccchhhHHHhHH-HhHhhhccCCcccEEEecCcccccCCCc
Q 019713 97 VNIAVSGAAGMIANHLLF-KLAAGEVLGPDQPIALKLLGSERSLQALEGVA-MELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~-~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a-~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+||+||||+|.+|..+.. .|...... .+.+.++... . .|.. .++.. ....+.- ..+.+.++++|
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~----~~~l~~~ss~----~-aG~~~~~~~~----~~~~~~~-~~~~~~~~~~D 66 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFD----LIEPVFFSTS----Q-IGVPAPNFGK----DAGMLHD-AFDIESLKQLD 66 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGG----GSEEEEEESS----S-TTSBCCCSSS----CCCBCEE-TTCHHHHTTCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCC----ceEEEEEecc----c-cCcCHHHhCC----CceEEEe-cCChhHhccCC
Confidence 589999999999999998 78776642 1344444321 1 2221 11210 0011211 22345689999
Q ss_pred EEEEecc
Q 019713 175 WALLIGA 181 (337)
Q Consensus 175 vVIitag 181 (337)
+|+++.|
T Consensus 67 vvf~a~~ 73 (370)
T 3pzr_A 67 AVITCQG 73 (370)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9998754
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.063 Score=48.65 Aligned_cols=117 Identities=16% Similarity=0.103 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc----------hhhHHHhHHHhHhhhccCCcccEEE-ec
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER----------SLQALEGVAMELEDSLFPLLREVKI-GI 164 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~----------~~~~l~g~a~DL~d~~~~~~~~v~i-~t 164 (337)
.++|.|+||+|.||.+++..|+..|. .|.+ +|.+. ..+.++....++.... .++.. ..
T Consensus 10 gk~vlVTGas~gIG~~ia~~l~~~G~-----~V~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 78 (287)
T 3pxx_A 10 DKVVLVTGGARGQGRSHAVKLAEEGA-----DIIL--FDICHDIETNEYPLATSRDLEEAGLEVEKTG----RKAYTAEV 78 (287)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EECCSCCTTSCSCCCCHHHHHHHHHHHHHTT----SCEEEEEC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----eEEE--EcccccccccccchhhhHHHHHHHHHHHhcC----CceEEEEc
Confidence 35799999999999999999999875 2444 22220 1334444434443321 12221 11
Q ss_pred C--ccc-----------ccCCCcEEEEecccCCCC-CCc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 165 N--PYE-----------LFEDAEWALLIGAKPRGP-GME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 165 ~--~~e-----------al~dADvVIitag~prk~-g~~---R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
| +.+ .+...|++|..+|..... ..+ -...+..|..-...+.+.+..+-...+.||+++-
T Consensus 79 D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 154 (287)
T 3pxx_A 79 DVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS 154 (287)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence 1 111 123789999998864321 122 2234666765555566665554344567777774
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0044 Score=56.65 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++||.|+||+|++|++++..|+..+.
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~ 29 (308)
T 1qyc_A 3 SRSRILLIGATGYIGRHVAKASLDLGH 29 (308)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhCCC
Confidence 467899999999999999999998773
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0069 Score=56.78 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
++||.|+||+|++|++++..|+..+
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g 34 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAH 34 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTT
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCC
Confidence 3689999999999999999999877
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.061 Score=47.95 Aligned_cols=114 Identities=12% Similarity=0.034 Sum_probs=61.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc-hhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc---
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKIG-IN--PYE--- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~-~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e--- 168 (337)
.++|.|+||+|.+|.+++..|+..+. .|.+ . ++ +.+.++....++.... .++... .| +.+
T Consensus 7 ~k~vlITGasggiG~~~a~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~ 73 (261)
T 1gee_A 7 GKVVVITGSSTGLGKSMAIRFATEKA-----KVVV--N--YRSKEDEANSVLEEIKKVG----GEAIAVKGDVTVESDVI 73 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE--E--ESSCHHHHHHHHHHHHHTT----CEEEEEECCTTSHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE--E--cCCChHHHHHHHHHHHhcC----CceEEEECCCCCHHHHH
Confidence 35899999999999999999998774 2443 2 33 3444444433443211 122211 11 111
Q ss_pred -cc-------CCCcEEEEecccCCCCC---Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -LF-------EDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -al-------~dADvVIitag~prk~g---~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+ .+.|+||..+|...... .+. .+.+..|.. +.+...+.+.+. .+.+.||+++-
T Consensus 74 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~~iv~isS 145 (261)
T 1gee_A 74 NLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVEN-DIKGTVINMSS 145 (261)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCCEEEEECC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhC-CCCCEEEEeCC
Confidence 12 37899999988643211 111 123444533 344455555553 22457777764
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.066 Score=48.29 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=64.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc---
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE--- 168 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e--- 168 (337)
+.++|.|+||+|.||.+++..|+..|. .+.+. .+++.+.++..+.++.+.. .++... .| +.+
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~-----~vv~~---~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~ 70 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGY-----NIVIN---YARSKKAALETAEEIEKLG----VKVLVVKANVGQPAKIK 70 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTC-----EEEEE---ESSCHHHHHHHHHHHHTTT----CCEEEEECCTTCHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC-----EEEEE---cCCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHH
Confidence 346899999999999999999999875 24432 1345555555555554321 122221 11 111
Q ss_pred --------ccCCCcEEEEecccCCCCC---Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 --------LFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 --------al~dADvVIitag~prk~g---~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+..-|++|..+|...... .+. ...+..|. .+.+...+.+.+. ..+.||+++-
T Consensus 71 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~--~~g~iv~isS 141 (258)
T 3oid_A 71 EMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKN--GGGHIVSISS 141 (258)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--TCEEEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEECc
Confidence 1235699999887532211 111 12344553 3445555655653 4567777764
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.044 Score=49.37 Aligned_cols=113 Identities=17% Similarity=0.150 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--cccc---
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYEL--- 169 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~ea--- 169 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.... .++... .| +.+.
T Consensus 29 ~k~vlITGas~gIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~ 95 (262)
T 3rkr_A 29 GQVAVVTGASRGIGAAIARKLGSLGA-----RVVL----TARDVEKLRAVEREIVAAG----GEAESHACDLSHSDAIAA 95 (262)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CEEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHhC----CceeEEEecCCCHHHHHH
Confidence 36899999999999999999998875 2443 2456666665555554321 122221 11 1221
Q ss_pred --------cCCCcEEEEecccCCCCC----Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 --------FEDAEWALLIGAKPRGPG----MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 --------l~dADvVIitag~prk~g----~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+...|++|..+|.....+ .+. .+.+..|+ .+.+.+.+.+.+. ..+.||+++-
T Consensus 96 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS 166 (262)
T 3rkr_A 96 FATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAA--KRGHIINISS 166 (262)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCCEEEEECS
T ss_pred HHHHHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCceEEEEec
Confidence 235899999988622111 111 12344443 3455555556553 4557777774
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.083 Score=47.05 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~--~~e---- 168 (337)
.++|.|+||+|.||.+++..|+..|. .|.+. +. .+.+.++....++.+.. .++. +..| +.+
T Consensus 4 ~k~~lVTGas~gIG~~ia~~l~~~G~-----~V~~~--~~-~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~ 71 (246)
T 3osu_A 4 TKSALVTGASRGIGRSIALQLAEEGY-----NVAVN--YA-GSKEKAEAVVEEIKAKG----VDSFAIQANVADADEVKA 71 (246)
T ss_dssp SCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE--ES-SCHHHHHHHHHHHHHTT----SCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEEE--eC-CCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHH
Confidence 35789999999999999999999875 24432 11 23344554444444321 1121 1111 111
Q ss_pred -------ccCCCcEEEEecccCCC-C--CCch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -------LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -------al~dADvVIitag~prk-~--g~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|.... + ..+. ...+..|+. +.+...+.+.+. ..+.||+++-
T Consensus 72 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~~g~iv~isS 141 (246)
T 3osu_A 72 MIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQ--RSGAIINLSS 141 (246)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEEcc
Confidence 12378999999886432 1 1121 123555543 455555555654 4457777764
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.1 Score=46.81 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=63.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc----c
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----E 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~----e 168 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ . +++.++++..+.++.... + ..++.. ..| +. +
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~-~-~~~~~~~~~D~~~~~~v~~ 75 (260)
T 2z1n_A 7 GKLAVVTAGSSGLGFASALELARNGA-----RLLL--F--SRNREKLEAAASRIASLV-S-GAQVDIVAGDIREPGDIDR 75 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHHHHHHHHHHS-T-TCCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHHhcC-C-CCeEEEEEccCCCHHHHHH
Confidence 35799999999999999999998774 2444 2 445555554444444210 0 001221 111 11 1
Q ss_pred ccC------CCcEEEEecccCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 LFE------DAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 al~------dADvVIitag~prk~g---~~---R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.++ +.|++|..+|...... .+ -...+..|.. +.+.+.+.+.+. ..+.||+++-
T Consensus 76 ~~~~~~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS 144 (260)
T 2z1n_A 76 LFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEK--GWGRMVYIGS 144 (260)
T ss_dssp HHHHHHHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEECc
Confidence 222 4899999988643211 11 1223445543 345566666553 3457777764
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.1 Score=47.14 Aligned_cols=114 Identities=12% Similarity=0.131 Sum_probs=66.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC--c-------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------- 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~--~------- 166 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++.... + ...+. +..| +
T Consensus 11 k~~lVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~D~~~~~~~~~~ 79 (267)
T 3t4x_A 11 KTALVTGSTAGIGKAIATSLVAEGA-----NVLI----NGRREENVNETIKEIRAQY-P-DAILQPVVADLGTEQGCQDV 79 (267)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHHC-T-TCEEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhC-C-CceEEEEecCCCCHHHHHHH
Confidence 5789999999999999999999875 2544 2455556655555554322 1 11121 1111 1
Q ss_pred ccccCCCcEEEEecccCCCCC---Cchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 YELFEDAEWALLIGAKPRGPG---MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 ~eal~dADvVIitag~prk~g---~~R~---dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+...|++|..+|...... .+.. ..+..|+. +.+.+.+.+.+. ..+.||+++-
T Consensus 80 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~~g~iv~isS 144 (267)
T 3t4x_A 80 IEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER--KEGRVIFIAS 144 (267)
T ss_dssp HHHCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TEEEEEEECC
T ss_pred HHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCCEEEEEcc
Confidence 123457899999988643211 1111 23555533 355666666653 4567777764
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.068 Score=48.67 Aligned_cols=115 Identities=13% Similarity=0.143 Sum_probs=64.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcc---------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY--------- 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~--------- 167 (337)
++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.+..... ..+..--.+.
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~ 98 (270)
T 3ftp_A 29 QVAIVTGASRGIGRAIALELARRGA-----MVIG----TATTEAGAEGIGAAFKQAGLEG-RGAVLNVNDATAVDALVES 98 (270)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHHTCCC-EEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcCCcE-EEEEEeCCCHHHHHHHHHH
Confidence 5788999999999999999999875 2443 2445556655555554332110 0011000111
Q ss_pred --cccCCCcEEEEecccCCCCC---Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 --ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 --eal~dADvVIitag~prk~g---~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|...... .+. ...+..|+. +.+...+.+.+. ..+.||+++-
T Consensus 99 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS 164 (270)
T 3ftp_A 99 TLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKA--RGGRIVNITS 164 (270)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEECc
Confidence 12337899999988643211 121 223455533 445555555553 4567777764
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.032 Score=50.15 Aligned_cols=113 Identities=16% Similarity=0.038 Sum_probs=62.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhH-HHhHHHhHhhhccCCcccEEEe-cC--ccc----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA-LEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~-l~g~a~DL~d~~~~~~~~v~i~-t~--~~e---- 168 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ . +++.+. ++....++.... . .++... .| +.+
T Consensus 5 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~v~~ 72 (260)
T 1x1t_A 5 KVAVVTGSTSGIGLGIATALAAQGA-----DIVL--N--GFGDAAEIEKVRAGLAAQH-G--VKVLYDGADLSKGEAVRG 72 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEE--E--CCSCHHHHHHHHHHHHHHH-T--SCEEEECCCTTSHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHcCC-----EEEE--E--eCCcchHHHHHHHHHHhcc-C--CcEEEEECCCCCHHHHHH
Confidence 5799999999999999999998875 2444 2 333333 443333343210 0 112111 11 111
Q ss_pred -------ccCCCcEEEEecccCCCCC---Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -------al~dADvVIitag~prk~g---~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|...... .+. ...+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 73 ~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS 142 (260)
T 1x1t_A 73 LVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQ--GFGRIINIAS 142 (260)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEECc
Confidence 1237899999988643211 111 233555544 555666666654 3467777764
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.095 Score=48.04 Aligned_cols=113 Identities=16% Similarity=0.116 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc-----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~----- 167 (337)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... .++.. ..| +.
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~ 94 (283)
T 3v8b_A 28 SPVALITGAGSGIGRATALALAADGV-----TVGA----LGRTRTEVEEVADEIVGAG----GQAIALEADVSDELQMRN 94 (283)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHTTTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHH
Confidence 35789999999999999999999875 2444 2455566665555554321 12221 111 11
Q ss_pred ------cccCCCcEEEEecccCC--CC--CCch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ------ELFEDAEWALLIGAKPR--GP--GMER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 ------eal~dADvVIitag~pr--k~--g~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|... .+ ..+. ...+..|+ .+.+...+.+.+. ..+.||+++-
T Consensus 95 ~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~Iv~isS 165 (283)
T 3v8b_A 95 AVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQR--GGGAIVVVSS 165 (283)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCceEEEEcC
Confidence 12337899999988632 22 1222 22355553 3455555666664 4567777764
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.018 Score=51.79 Aligned_cols=110 Identities=11% Similarity=0.068 Sum_probs=60.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC--cc----cc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----EL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~--~~----ea 169 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ . +++.+.++....++.+ ++. +..| +. +.
T Consensus 13 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~-------~~~~~~~D~~d~~~v~~~ 76 (263)
T 3ak4_A 13 RKAIVTGGSKGIGAAIARALDKAGA-----TVAI--A--DLDVMAAQAVVAGLEN-------GGFAVEVDVTKRASVDAA 76 (263)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHHHHHTCTT-------CCEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHhc-------CCeEEEEeCCCHHHHHHH
Confidence 5899999999999999999998875 2444 2 4444555443333321 111 1111 11 12
Q ss_pred c-------CCCcEEEEecccCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 F-------EDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 l-------~dADvVIitag~prk~g---~~---R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+ .+.|++|..+|...... .+ -...+..|.. +.+...+.+.+. ...+.||+++-
T Consensus 77 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~g~iv~isS 146 (263)
T 3ak4_A 77 MQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLAS-NTKGVIVNTAS 146 (263)
T ss_dssp HHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCCEEEEECC
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCeEEEEecc
Confidence 2 27899999988643211 11 1223445533 344445555543 32456677663
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.067 Score=48.09 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--cccc---
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYEL--- 169 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~ea--- 169 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.++++..+.++.... .++... .| +.+.
T Consensus 7 ~k~vlVTGas~GIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~ 73 (252)
T 3h7a_A 7 NATVAVIGAGDYIGAEIAKKFAAEGF-----TVFA----GRRNGEKLAPLVAEIEAAG----GRIVARSLDARNEDEVTA 73 (252)
T ss_dssp SCEEEEECCSSHHHHHHHHHHHHTTC-----EEEE----EESSGGGGHHHHHHHHHTT----CEEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CeEEEEECcCCCHHHHHH
Confidence 45799999999999999999999875 2544 2455566665555554321 122221 11 1111
Q ss_pred -c------CCCcEEEEecccCCCCC---Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 -F------EDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 -l------~dADvVIitag~prk~g---~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+ ...|++|..+|...... .+. ...+..|+ .+.+...+.+.+. ..+.||+++-
T Consensus 74 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS 142 (252)
T 3h7a_A 74 FLNAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAH--GQGKIFFTGA 142 (252)
T ss_dssp HHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEEE
T ss_pred HHHHHHhhCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEECC
Confidence 2 25699999888643211 111 12344453 3455566666664 3456676653
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.11 Score=46.73 Aligned_cols=114 Identities=14% Similarity=0.036 Sum_probs=64.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cccc----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL---- 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~ea---- 169 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ + +++.+.++....++.+.. . ..++.. ..| +.+.
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~D~~~~~~v~~~ 76 (267)
T 2gdz_A 8 KVALVTGAAQGIGRAFAEALLLKGA-----KVAL--V--DWNLEAGVQCKAALHEQF-E-PQKTLFIQCDVADQQQLRDT 76 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHHHHHHHTTTS-C-GGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC-----EEEE--E--ECCHHHHHHHHHHHHhhc-C-CCceEEEecCCCCHHHHHHH
Confidence 5899999999999999999998875 2444 2 344444443333343211 0 112222 111 1211
Q ss_pred -------cCCCcEEEEecccCCCCCCchhhhHHhhHH----HHHHHHHHHHhhcC-CCeEEEEeCC
Q 019713 170 -------FEDAEWALLIGAKPRGPGMERAGLLDINGQ----IFAEQGKALNAVAS-RNVKVIVVGN 223 (337)
Q Consensus 170 -------l~dADvVIitag~prk~g~~R~dll~~N~~----I~~~i~~~I~~~a~-p~aivIvvtN 223 (337)
+...|++|..+|... ..+-.+.+..|.. ..+.+.+.+.+... +.+.||+++-
T Consensus 77 ~~~~~~~~g~id~lv~~Ag~~~--~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS 140 (267)
T 2gdz_A 77 FRKVVDHFGRLDILVNNAGVNN--EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS 140 (267)
T ss_dssp HHHHHHHHSCCCEEEECCCCCC--SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred HHHHHHHcCCCCEEEECCCCCC--hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCC
Confidence 235799999988642 1222334555644 55666666655311 2467788774
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.009 Score=56.70 Aligned_cols=117 Identities=18% Similarity=0.107 Sum_probs=62.3
Q ss_pred CEEEEEcCCCchHHHHHHHHH-HcCCCCCCCceEEEeccccchhh-------HHHhHHHhHhhhccCC-ccc---EEE-e
Q 019713 97 VNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQ-------ALEGVAMELEDSLFPL-LRE---VKI-G 163 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~-~~~l~~e~~~v~L~L~d~d~~~~-------~l~g~a~DL~d~~~~~-~~~---v~i-~ 163 (337)
|||.|+||+|+||++++..|+ ..+. .|.+ ++...... ..+.....+++..... ..+ +.. .
T Consensus 3 m~vlVTGatG~iG~~l~~~L~~~~g~-----~V~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (397)
T 1gy8_A 3 MRVLVCGGAGYIGSHFVRALLRDTNH-----SVVI--VDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEV 75 (397)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCC-----EEEE--EECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCCC-----EEEE--EecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEE
Confidence 589999999999999999998 7663 2433 22211110 0111111111111000 001 221 1
Q ss_pred cC--cc----cccC--C-CcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 164 IN--PY----ELFE--D-AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 164 t~--~~----eal~--d-ADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.| +. ++++ + .|+||.+++..... ..+..+.+..|+.-...+.+.+.+. ... .||++|
T Consensus 76 ~Dl~d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~~~-~iv~~S 143 (397)
T 1gy8_A 76 GDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH-KCD-KIIFSS 143 (397)
T ss_dssp SCTTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-EEEEEE
T ss_pred CCCCCHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHh-CCC-EEEEEC
Confidence 11 11 2344 5 99999998753211 0123346778888888888888774 333 556655
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=95.86 E-value=0.021 Score=51.30 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcc--------
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~-------- 167 (337)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.+... .+..--.+.
T Consensus 9 gk~~lVTGas~gIG~a~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~----~~~~Dv~d~~~v~~~~~ 75 (248)
T 3op4_A 9 GKVALVTGASRGIGKAIAELLAERGA-----KVIG----TATSESGAQAISDYLGDNGK----GMALNVTNPESIEAVLK 75 (248)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHGGGEE----EEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhcccce----EEEEeCCCHHHHHHHHH
Confidence 35789999999999999999999875 2444 24455555544444432110 011000111
Q ss_pred ---cccCCCcEEEEecccCCCCC---Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ---ELFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 ---eal~dADvVIitag~prk~g---~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|...... .+. ...+..|. .+.+...+.+.+. ..+.||+++-
T Consensus 76 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~--~~g~iv~isS 142 (248)
T 3op4_A 76 AITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKK--RQGRIINVGS 142 (248)
T ss_dssp HHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEEcc
Confidence 12337899999988643211 111 12344553 3455555656553 4467777764
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0082 Score=53.54 Aligned_cols=115 Identities=13% Similarity=0.083 Sum_probs=63.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-Cc------
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NP------ 166 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~~------ 166 (337)
.+.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.++++....++.+.. .+...+ .+
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-----~~~~~D~~~~~~~~~ 77 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKLGS-----KVII----SGSNEEKLKSLGNALKDNY-----TIEVCNLANKEECSN 77 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCSSE-----EEEECCTTSHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHhccCc-----cEEEcCCCCHHHHHH
Confidence 3456899999999999999999998875 2444 2445555554443333211 111110 11
Q ss_pred -ccccCCCcEEEEecccCCC-C--C---CchhhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 167 -YELFEDAEWALLIGAKPRG-P--G---MERAGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 167 -~eal~dADvVIitag~prk-~--g---~~R~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
.+.+.+.|++|..+|.... + . .+-...+..|. .+.+...+.+.+. ..+.||+++-.
T Consensus 78 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~g~iv~isS~ 144 (249)
T 3f9i_A 78 LISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK--RYGRIINISSI 144 (249)
T ss_dssp HHHTCSCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCC
T ss_pred HHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEEccH
Confidence 1223478999998875421 1 1 11223344553 3455555555553 45677777754
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0094 Score=53.38 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 12 ~k~vlVTGasggiG~~~a~~l~~~G~ 37 (265)
T 2o23_A 12 GLVAVITGGASGLGLATAERLVGQGA 37 (265)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 36899999999999999999998875
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0048 Score=57.27 Aligned_cols=111 Identities=16% Similarity=0.151 Sum_probs=61.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc---CCCCCCCceEEEeccccc---hhhHHHhHHHhHhhhccCCcccEEEe-cC--c-
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAG---EVLGPDQPIALKLLGSER---SLQALEGVAMELEDSLFPLLREVKIG-IN--P- 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~---~l~~e~~~v~L~L~d~d~---~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~- 166 (337)
|||.|+||+|++|++++..|+.. +.... .|.+ ++... +.+.++ ++.. ..++... .| +
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~--~V~~--~~r~~~~~~~~~~~----~~~~-----~~~~~~~~~Dl~d~ 67 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPAD--EVIV--LDSLTYAGNRANLA----PVDA-----DPRLRFVHGDIRDA 67 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCS--EEEE--EECCCTTCCGGGGG----GGTT-----CTTEEEEECCTTCH
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCce--EEEE--EECCCccCchhhhh----hccc-----CCCeEEEEcCCCCH
Confidence 58999999999999999999884 41000 2432 22211 111211 1111 0122211 11 1
Q ss_pred ---ccccCCCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 167 ---YELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 167 ---~eal~dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.+.+.++|+||.++|..... ..+..+.+..|+.-...+.+.+.+. .. ..||++|
T Consensus 68 ~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~-~~-~~~v~~S 126 (337)
T 1r6d_A 68 GLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA-GV-GRVVHVS 126 (337)
T ss_dssp HHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHT-TC-CEEEEEE
T ss_pred HHHHHHhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CC-CEEEEec
Confidence 24567899999988753210 0122345778888888888888775 22 2566655
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.14 Score=46.41 Aligned_cols=113 Identities=13% Similarity=0.042 Sum_probs=63.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc-----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----- 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e----- 168 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ . +++.+.++....++.... .++.. ..| +.+
T Consensus 22 k~vlVTGas~gIG~aia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~ 88 (273)
T 1ae1_A 22 TTALVTGGSKGIGYAIVEELAGLGA-----RVYT--C--SRNEKELDECLEIWREKG----LNVEGSVCDLLSRTERDKL 88 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHHhcC----CceEEEECCCCCHHHHHHH
Confidence 5799999999999999999998875 2444 2 445555554444443221 11221 111 111
Q ss_pred ------cc-CCCcEEEEecccCCC-CC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 169 ------LF-EDAEWALLIGAKPRG-PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 169 ------al-~dADvVIitag~prk-~g--~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
.+ ...|++|..+|.... +- .+. ...+..|.. +.+...+.+.+. ..+.||+++..
T Consensus 89 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~--~~g~iv~isS~ 159 (273)
T 1ae1_A 89 MQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS--QNGNVIFLSSI 159 (273)
T ss_dssp HHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TSEEEEEECCG
T ss_pred HHHHHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEcCH
Confidence 12 578999999886432 11 121 223444533 444455555553 34677777753
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.011 Score=53.89 Aligned_cols=110 Identities=18% Similarity=0.166 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e---- 168 (337)
.++|.|+||+|.||.+++..|+..|. .|.+. +++.++++..+.++.. ++.. ..| +.+
T Consensus 27 gk~vlVTGas~gIG~aia~~la~~G~-----~V~~~----~r~~~~~~~~~~~~~~-------~~~~~~~Dv~d~~~v~~ 90 (266)
T 3grp_A 27 GRKALVTGATGGIGEAIARCFHAQGA-----IVGLH----GTREDKLKEIAADLGK-------DVFVFSANLSDRKSIKQ 90 (266)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHCS-------SEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhCC-------ceEEEEeecCCHHHHHH
Confidence 35799999999999999999999885 24442 4455555544332211 1211 111 111
Q ss_pred -------ccCCCcEEEEecccCCC-C--CCch---hhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -------LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -------al~dADvVIitag~prk-~--g~~R---~dll~~N~~I----~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|.... + ..+. ...+..|+.- .+.+.+.+.+. ..+.||+++-
T Consensus 91 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~Iv~isS 160 (266)
T 3grp_A 91 LAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRR--RYGRIINITS 160 (266)
T ss_dssp HHHHHHHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcEEEEECC
Confidence 23478999999886432 1 1111 2234555443 56666666654 4467777764
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.089 Score=48.13 Aligned_cols=114 Identities=12% Similarity=0.052 Sum_probs=63.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-C--cc------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--PY------ 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~--~~------ 167 (337)
++|.|+||+|.||.+++..|+..|. .|.+ .+.. +.+.++..+.++.... ..++.... | +.
T Consensus 26 k~~lVTGas~GIG~~ia~~la~~G~-----~V~~--~~r~-~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~ 94 (281)
T 3v2h_A 26 KTAVITGSTSGIGLAIARTLAKAGA-----NIVL--NGFG-APDEIRTVTDEVAGLS---SGTVLHHPADMTKPSEIADM 94 (281)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTC-----EEEE--ECCC-CHHHHHHHHHHHHTTC---SSCEEEECCCTTCHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE--EeCC-ChHHHHHHHHHHhhcc---CCcEEEEeCCCCCHHHHHHH
Confidence 5789999999999999999999875 2444 2321 3344444444444321 11222211 1 11
Q ss_pred -----cccCCCcEEEEecccCCCCC---Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 -----ELFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 -----eal~dADvVIitag~prk~g---~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|...... .+. ...+..|+ .+.+...+.+.+. ..+.||+++-
T Consensus 95 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS 163 (281)
T 3v2h_A 95 MAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKK--GWGRIINIAS 163 (281)
T ss_dssp HHHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEECC
Confidence 12347899999988643221 121 12344553 3455555666664 3467777764
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.042 Score=50.37 Aligned_cols=116 Identities=15% Similarity=0.118 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC--cc-----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----- 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~--~~----- 167 (337)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++...... .+. +..| +.
T Consensus 33 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~ 100 (281)
T 4dry_A 33 GRIALVTGGGTGVGRGIAQALSAEGY-----SVVI----TGRRPDVLDAAAGEIGGRTGN---IVRAVVCDVGDPDQVAA 100 (281)
T ss_dssp -CEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHHSS---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCC---eEEEEEcCCCCHHHHHH
Confidence 35789999999999999999998875 2544 245556666555555432211 111 1111 11
Q ss_pred ------cccCCCcEEEEecccCCCCC----Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ------ELFEDAEWALLIGAKPRGPG----MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 ------eal~dADvVIitag~prk~g----~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|.....+ .+. ...+..|+. +.+...+.+.+.....+.||+++-
T Consensus 101 ~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS 173 (281)
T 4dry_A 101 LFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGS 173 (281)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence 12236799999988642211 111 123445533 456666666664113577888774
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.12 Score=46.81 Aligned_cols=115 Identities=13% Similarity=0.069 Sum_probs=64.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc----------chhhHHHhHHHhHhhhccCCcccEEE-ecC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE----------RSLQALEGVAMELEDSLFPLLREVKI-GIN 165 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d----------~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~ 165 (337)
++|.|+||+|.||.+++..|+..|. .|.+ ++.+ .+.+.++....++.+.. .++.. ..|
T Consensus 14 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D 82 (278)
T 3sx2_A 14 KVAFITGAARGQGRAHAVRLAADGA-----DIIA--VDLCDQIASVPYPLATPEELAATVKLVEDIG----SRIVARQAD 82 (278)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEE--EECCSCCTTCSSCCCCHHHHHHHHHHHHHHT----CCEEEEECC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----eEEE--EecccccccccccccchHHHHHHHHHHHhcC----CeEEEEeCC
Confidence 5799999999999999999998875 2443 2222 11444444444443322 12221 111
Q ss_pred --ccc-----------ccCCCcEEEEecccCCC-CCC-chhhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 166 --PYE-----------LFEDAEWALLIGAKPRG-PGM-ERAGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 166 --~~e-----------al~dADvVIitag~prk-~g~-~R~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+ .+...|++|..+|.... +.. +-...+..|. .+.+...+.+.+. ...+.||+++-
T Consensus 83 ~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~g~iv~isS 158 (278)
T 3sx2_A 83 VRDRESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQ-GTGGSIVLISS 158 (278)
T ss_dssp TTCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CSCEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCcEEEEEcc
Confidence 111 12378999999886432 211 1123345553 3455555666664 44677777774
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.016 Score=52.36 Aligned_cols=114 Identities=14% Similarity=0.149 Sum_probs=59.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHh---HHHhHhhhccCCcccEEEecCcccccCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG---VAMELEDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g---~a~DL~d~~~~~~~~v~i~t~~~eal~d 172 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+. +++.+.++. ...|+.|... . .. ....-.+.+..
T Consensus 21 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~Dl~d~~~-v-~~--~~~~~~~~~g~ 87 (253)
T 2nm0_A 21 SRSVLVTGGNRGIGLAIARAFADAGD-----KVAIT----YRSGEPPEGFLAVKCDITDTEQ-V-EQ--AYKEIEETHGP 87 (253)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESSSCCCTTSEEEECCTTSHHH-H-HH--HHHHHHHHTCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----eCChHhhccceEEEecCCCHHH-H-HH--HHHHHHHHcCC
Confidence 46899999999999999999998874 24432 222222211 1112221110 0 00 00001123446
Q ss_pred CcEEEEecccCCCC------CCchhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 173 AEWALLIGAKPRGP------GMERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 173 ADvVIitag~prk~------g~~R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
.|++|..+|..... ..+....+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 88 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~--~~g~iv~isS~ 147 (253)
T 2nm0_A 88 VEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRA--KKGRVVLISSV 147 (253)
T ss_dssp CSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH--TCEEEEEECCC
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEECch
Confidence 79999988864321 1122234555644 444455555553 34677777643
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.019 Score=50.64 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 7 ~~~vlVTGasggiG~~~a~~l~~~G~ 32 (244)
T 1cyd_A 7 GLRALVTGAGKGIGRDTVKALHASGA 32 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998774
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.032 Score=49.64 Aligned_cols=109 Identities=13% Similarity=0.023 Sum_probs=59.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHH-hHHHhHhhhccCCcccEEEecCccccc-CCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGINPYELF-EDA 173 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~-g~a~DL~d~~~~~~~~v~i~t~~~eal-~dA 173 (337)
|++|.|+||+|.||.+++..|+..|. .|.+. +++.++++ ....|+.+... .. .-.+.+ ...
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G~-----~V~~~----~r~~~~~~~~~~~Dl~~~~~-v~-------~~~~~~~~~i 63 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAGH-----QIVGI----DIRDAEVIADLSTAEGRKQA-IA-------DVLAKCSKGM 63 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESSSSSEECCTTSHHHHHHH-HH-------HHHTTCTTCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----eCCchhhccccccCCCCHHH-HH-------HHHHHhCCCC
Confidence 35799999999999999999998774 24442 22222211 02344444220 00 001122 567
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
|++|..+|.....+ .-.+.+..|.. +.+...+.+.+. ..+.||+++-.
T Consensus 64 d~lv~~Ag~~~~~~-~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~g~iv~isS~ 115 (257)
T 1fjh_A 64 DGLVLCAGLGPQTK-VLGNVVSVNYFGATELMDAFLPALKKG--HQPAAVVISSV 115 (257)
T ss_dssp SEEEECCCCCTTCS-SHHHHHHHHTHHHHHHHHHHHHHHHTS--SSCEEEEECCG
T ss_pred CEEEECCCCCCCcc-cHHHHHHHhhHHHHHHHHHHHHHHhhc--CCcEEEEECCh
Confidence 99999988643111 12334555533 344444555442 34677777753
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.12 Score=47.15 Aligned_cols=116 Identities=13% Similarity=0.069 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~--~~e---- 168 (337)
.++|.|+||+|.||.+++..|+..|. .|.+. + ..+.+.++..+.++.... .++. +..| +.+
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~~--~-~~~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~ 98 (271)
T 3v2g_A 31 GKTAFVTGGSRGIGAAIAKRLALEGA-----AVALT--Y-VNAAERAQAVVSEIEQAG----GRAVAIRADNRDAEAIEQ 98 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE--E-SSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE--e-CCCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHH
Confidence 35799999999999999999999875 24442 1 123344554444454322 1121 1111 111
Q ss_pred -------ccCCCcEEEEecccCCCCC---Cc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -------LFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -------al~dADvVIitag~prk~g---~~---R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|...... .+ -...+..|+.-...+.+.+.+.-.+.+.||+++-
T Consensus 99 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS 166 (271)
T 3v2g_A 99 AIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS 166 (271)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred HHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 1237899999988643221 11 1234556654433444444443234567777764
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.18 Score=45.35 Aligned_cols=112 Identities=19% Similarity=0.201 Sum_probs=62.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc-----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----- 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e----- 168 (337)
++|.|+||+|.+|.+++..|+..|. .|.+. +++.+.++..+.++.... .++.. ..| +.+
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~ 74 (262)
T 1zem_A 8 KVCLVTGAGGNIGLATALRLAEEGT-----AIALL----DMNREALEKAEASVREKG----VEARSYVCDVTSEEAVIGT 74 (262)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHTTT----SCEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHHH
Confidence 5799999999999999999999875 24442 345555554444444321 12221 111 111
Q ss_pred ------ccCCCcEEEEecccC-C-CCC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 ------LFEDAEWALLIGAKP-R-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 ------al~dADvVIitag~p-r-k~g--~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|.. . .+- .+. ...+..|+. +.+...+.+.+. ..+.||+++-
T Consensus 75 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS 144 (262)
T 1zem_A 75 VDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ--NYGRIVNTAS 144 (262)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEcc
Confidence 233789999998864 2 111 111 123444533 445555555553 3467777764
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.039 Score=51.13 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc-----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~----- 167 (337)
.++|.|+||+|.||.+++..|+..|. .|.+. +++.+.++..+.++.... + .++.. ..| +.
T Consensus 41 ~k~vlVTGas~GIG~aia~~la~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dv~d~~~v~~ 108 (293)
T 3rih_A 41 ARSVLVTGGTKGIGRGIATVFARAGA-----NVAVA----ARSPRELSSVTAELGELG-A--GNVIGVRLDVSDPGSCAD 108 (293)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE----ESSGGGGHHHHHHHTTSS-S--SCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHhhC-C--CcEEEEEEeCCCHHHHHH
Confidence 35799999999999999999999875 25442 445556655555554321 0 12221 111 11
Q ss_pred ------cccCCCcEEEEecccCC-CC--CCch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ------ELFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 ------eal~dADvVIitag~pr-k~--g~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|... .+ ..+. ...+..|+. +.+...+.+.+. ..+.||+++-
T Consensus 109 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~iV~isS 178 (293)
T 3rih_A 109 AARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTAS--GRGRVILTSS 178 (293)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH--SSCEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEeC
Confidence 22346799999888542 22 1122 123455533 344455555654 3346666654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.01 Score=53.65 Aligned_cols=112 Identities=9% Similarity=0.067 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc-----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~----- 167 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.. ++.. ..| +.
T Consensus 8 gk~~lVTGas~gIG~a~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~-------~~~~~~~Dv~~~~~v~~ 71 (255)
T 4eso_A 8 GKKAIVIGGTHGMGLATVRRLVEGGA-----EVLL----TGRNESNIARIREEFGP-------RVHALRSDIADLNEIAV 71 (255)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHGG-------GEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCC-------cceEEEccCCCHHHHHH
Confidence 35899999999999999999999875 2544 24555555544333321 1111 111 11
Q ss_pred ------cccCCCcEEEEecccCCCCC---Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ------ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 ------eal~dADvVIitag~prk~g---~~R---~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|...... .+. ...+..|..-...+.+.+..+-..++.||+++-
T Consensus 72 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 139 (255)
T 4eso_A 72 LGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS 139 (255)
T ss_dssp HHHHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 22347899999988653211 111 234566655444455555443233567788775
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.072 Score=48.42 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--cc----
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY---- 167 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~---- 167 (337)
+.++|.|+||+|.||.+++..|+..|. .|.+ .+++.++++..+.++.+.. . .++... .| +.
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dl~~~~~~v 78 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNGI-----MVVL----TCRDVTKGHEAVEKLKNSN-H--ENVVFHQLDVTDPIATM 78 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTT-C--CSEEEEECCTTSCHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C--CceEEEEccCCCcHHHH
Confidence 346799999999999999999998875 2544 2455566665555555432 1 122221 11 11
Q ss_pred --------cccCCCcEEEEecccC
Q 019713 168 --------ELFEDAEWALLIGAKP 183 (337)
Q Consensus 168 --------eal~dADvVIitag~p 183 (337)
+.+...|++|..||..
T Consensus 79 ~~~~~~~~~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 79 SSLADFIKTHFGKLDILVNNAGVA 102 (311)
T ss_dssp HHHHHHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHHHHHhCCCCCEEEECCccc
Confidence 1134789999998853
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0064 Score=52.30 Aligned_cols=107 Identities=9% Similarity=0.015 Sum_probs=56.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
+|||.|+||+|.+|.+++..|+ .+. .|.+ + +++.+. ...|+.+.. . + ....+.+...|+
T Consensus 3 kM~vlVtGasg~iG~~~~~~l~-~g~-----~V~~--~--~r~~~~---~~~D~~~~~-~----~---~~~~~~~~~~d~ 61 (202)
T 3d7l_A 3 AMKILLIGASGTLGSAVKERLE-KKA-----EVIT--A--GRHSGD---VTVDITNID-S----I---KKMYEQVGKVDA 61 (202)
T ss_dssp SCEEEEETTTSHHHHHHHHHHT-TTS-----EEEE--E--ESSSSS---EECCTTCHH-H----H---HHHHHHHCCEEE
T ss_pred CcEEEEEcCCcHHHHHHHHHHH-CCC-----eEEE--E--ecCccc---eeeecCCHH-H----H---HHHHHHhCCCCE
Confidence 3589999999999999999998 663 2443 2 222211 112222211 0 0 000112245799
Q ss_pred EEEecccCCCCCC---ch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 176 ALLIGAKPRGPGM---ER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 176 VIitag~prk~g~---~R---~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
||.++|....... +. .+.+..|..-...+.+.+.+....++.||+++-
T Consensus 62 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS 115 (202)
T 3d7l_A 62 IVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTG 115 (202)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECC
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcc
Confidence 9998885432111 11 233556655555555555543212357777764
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0068 Score=54.55 Aligned_cols=108 Identities=14% Similarity=0.018 Sum_probs=61.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc-----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE----- 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e----- 168 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ . +++.+.++..+.++. .++... .| +.+
T Consensus 7 k~vlVTGas~giG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~ 70 (253)
T 1hxh_A 7 KVALVTGGASGVGLEVVKLLLGEGA-----KVAF--S--DINEAAGQQLAAELG-------ERSMFVRHDVSSEADWTLV 70 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHHHHC-------TTEEEECCCTTCHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHcC-------CceEEEEccCCCHHHHHHH
Confidence 5799999999999999999998875 2443 2 344455544333331 111111 11 111
Q ss_pred ------ccCCCcEEEEecccCCCC---CCch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 ------LFEDAEWALLIGAKPRGP---GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 ------al~dADvVIitag~prk~---g~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|..... ..+. ...+..|.. ..+.+.+.+++. . +.||+++-
T Consensus 71 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~-g~iv~isS 138 (253)
T 1hxh_A 71 MAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET--G-GSIINMAS 138 (253)
T ss_dssp HHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT--C-EEEEEECC
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHc--C-CEEEEEcc
Confidence 123569999998864321 1121 233555533 455666666653 2 67777774
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.019 Score=52.93 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=45.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.+||+|||+ |.+|.+++..|...+. + |.+ .+++.++++..+.++ .+....+..+.++++|+
T Consensus 129 ~~~v~iiGa-G~~g~aia~~L~~~g~--~---V~v----~~r~~~~~~~l~~~~---------g~~~~~~~~~~~~~aDi 189 (275)
T 2hk9_A 129 EKSILVLGA-GGASRAVIYALVKEGA--K---VFL----WNRTKEKAIKLAQKF---------PLEVVNSPEEVIDKVQV 189 (275)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHHTC--E---EEE----ECSSHHHHHHHTTTS---------CEEECSCGGGTGGGCSE
T ss_pred CCEEEEECc-hHHHHHHHHHHHHcCC--E---EEE----EECCHHHHHHHHHHc---------CCeeehhHHhhhcCCCE
Confidence 469999995 9999999999988774 2 444 245555554432211 13343345677899999
Q ss_pred EEEeccc
Q 019713 176 ALLIGAK 182 (337)
Q Consensus 176 VIitag~ 182 (337)
||.+...
T Consensus 190 Vi~atp~ 196 (275)
T 2hk9_A 190 IVNTTSV 196 (275)
T ss_dssp EEECSST
T ss_pred EEEeCCC
Confidence 9998643
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.13 Score=46.81 Aligned_cols=115 Identities=17% Similarity=0.098 Sum_probs=65.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc-----------chhhHHHhHHHhHhhhccCCcccEEE-ec
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-----------RSLQALEGVAMELEDSLFPLLREVKI-GI 164 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d-----------~~~~~l~g~a~DL~d~~~~~~~~v~i-~t 164 (337)
++|.|+||+|.||.+++..|+..|. .|.+ .|.. ++.+.++..+.++.+.. .++.. ..
T Consensus 16 k~~lVTGas~gIG~a~a~~la~~G~-----~V~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 84 (280)
T 3pgx_A 16 RVAFITGAARGQGRSHAVRLAAEGA-----DIIA--CDICAPVSASVTYAPASPEDLDETARLVEDQG----RKALTRVL 84 (280)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEE--EECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT----CCEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEE--EeccccccccccccccCHHHHHHHHHHHHhcC----CeEEEEEc
Confidence 5789999999999999999999875 2443 2221 14455555444444321 12221 11
Q ss_pred C--cc-----------cccCCCcEEEEecccCCCCC---Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEe
Q 019713 165 N--PY-----------ELFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVV 221 (337)
Q Consensus 165 ~--~~-----------eal~dADvVIitag~prk~g---~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvv 221 (337)
| +. +.+...|++|..+|...... .+. ...+..|+ .+.+...+.+.+. ...+.||++
T Consensus 85 Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~iv~i 163 (280)
T 3pgx_A 85 DVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEA-GNGGSIVVV 163 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CSCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCCEEEEE
Confidence 1 11 12347899999988643111 111 12344453 3455666666664 446777887
Q ss_pred CC
Q 019713 222 GN 223 (337)
Q Consensus 222 tN 223 (337)
+-
T Consensus 164 sS 165 (280)
T 3pgx_A 164 SS 165 (280)
T ss_dssp CC
T ss_pred cc
Confidence 74
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=95.68 E-value=0.045 Score=48.20 Aligned_cols=114 Identities=17% Similarity=0.157 Sum_probs=61.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cccc----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL---- 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~ea---- 169 (337)
++|.|+||+|.+|.+++..|+..|. .+.+. . +++.+.++....++.... . ++.. ..| +.+.
T Consensus 2 k~vlVTGasggiG~~la~~l~~~G~-----~v~~~-~--~r~~~~~~~~~~~~~~~~-~---~~~~~~~D~~~~~~~~~~ 69 (244)
T 1edo_A 2 PVVVVTGASRGIGKAIALSLGKAGC-----KVLVN-Y--ARSAKAAEEVSKQIEAYG-G---QAITFGGDVSKEADVEAM 69 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE-E--SSCHHHHHHHHHHHHHHT-C---EEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE-c--CCCHHHHHHHHHHHHhcC-C---cEEEEeCCCCCHHHHHHH
Confidence 4799999999999999999998875 24331 1 234444444433443221 1 1211 111 1111
Q ss_pred -------cCCCcEEEEecccCCCCC---Cc---hhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 170 -------FEDAEWALLIGAKPRGPG---ME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 170 -------l~dADvVIitag~prk~g---~~---R~dll~~N~~I----~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
+.+.|+||..+|...... .+ ....+..|..- .+...+.+.+. ..+.||+++-.
T Consensus 70 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~~sS~ 139 (244)
T 1edo_A 70 MKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK--RKGRIINIASV 139 (244)
T ss_dssp HHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCT
T ss_pred HHHHHHHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc--CCCEEEEECCh
Confidence 237899999988653211 11 12234555433 44444545443 34677777753
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.016 Score=54.57 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=46.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
..++|+|||+ |.+|..++..|... ++ . .|.+ + +++.++++..+.++.. ++....+..++++++
T Consensus 134 ~~~~igiIG~-G~~g~~~a~~l~~~~g~-~---~V~v--~--dr~~~~~~~l~~~~~~-------~~~~~~~~~e~v~~a 197 (312)
T 2i99_A 134 SSEVLCILGA-GVQAYSHYEIFTEQFSF-K---EVRI--W--NRTKENAEKFADTVQG-------EVRVCSSVQEAVAGA 197 (312)
T ss_dssp TCCEEEEECC-SHHHHHHHHHHHHHCCC-S---EEEE--E--CSSHHHHHHHHHHSSS-------CCEECSSHHHHHTTC
T ss_pred CCcEEEEECC-cHHHHHHHHHHHHhCCC-c---EEEE--E--cCCHHHHHHHHHHhhC-------CeEEeCCHHHHHhcC
Confidence 4579999995 99999999988765 43 1 2444 3 4566666554332211 234444556788999
Q ss_pred cEEEEec
Q 019713 174 EWALLIG 180 (337)
Q Consensus 174 DvVIita 180 (337)
|+|+++-
T Consensus 198 DiVi~at 204 (312)
T 2i99_A 198 DVIITVT 204 (312)
T ss_dssp SEEEECC
T ss_pred CEEEEEe
Confidence 9998874
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.016 Score=56.44 Aligned_cols=72 Identities=13% Similarity=0.165 Sum_probs=42.1
Q ss_pred CCEEEEEcCCCchHHHHHH-HHHHcCCCCCCCceEEEeccccchhhHHHhHH-HhHhhhccCCcccEEEecCcccccCCC
Q 019713 96 MVNIAVSGAAGMIANHLLF-KLAAGEVLGPDQPIALKLLGSERSLQALEGVA-MELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~-~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a-~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
.+||+||||+|.+|..+.. .|...... .+.+.++... + .|.. .++.. ....+.- ..+.++++++
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~----~~~l~~~ss~-~----aG~~~~~~~~----~~~~v~~-~~~~~~~~~v 69 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFD----LIEPVFFSTS-N----AGGKAPSFAK----NETTLKD-ATSIDDLKKC 69 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGG----GSEEEEEESS-C----TTSBCCTTCC----SCCBCEE-TTCHHHHHTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCC----ceEEEEEech-h----cCCCHHHcCC----CceEEEe-CCChhHhcCC
Confidence 4799999999999999998 77776642 1444444322 1 1211 11211 0011211 1234568899
Q ss_pred cEEEEecc
Q 019713 174 EWALLIGA 181 (337)
Q Consensus 174 DvVIitag 181 (337)
|+|+++.|
T Consensus 70 Dvvf~a~~ 77 (377)
T 3uw3_A 70 DVIITCQG 77 (377)
T ss_dssp SEEEECSC
T ss_pred CEEEECCC
Confidence 99998754
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.014 Score=53.14 Aligned_cols=113 Identities=16% Similarity=0.080 Sum_probs=63.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e---- 168 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.++++..+.++. .++.. ..| +.+
T Consensus 6 ~k~vlITGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~ 69 (263)
T 2a4k_A 6 GKTILVTGAASGIGRAALDLFAREGA-----SLVA----VDREERLLAEAVAALE-------AEAIAVVADVSDPKAVEA 69 (263)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHTCC-------SSEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhc-------CceEEEEcCCCCHHHHHH
Confidence 35899999999999999999998875 2444 2445555554333222 11111 111 111
Q ss_pred -------ccCCCcEEEEecccCCCCC---Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 169 -------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 169 -------al~dADvVIitag~prk~g---~~R---~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
.+...|++|..+|...... .+. ...+..|..-...+.+.+..+....+.||+++-.
T Consensus 70 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~ 138 (263)
T 2a4k_A 70 VFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSV 138 (263)
T ss_dssp HHHHHHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCC
T ss_pred HHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 1235699999988643211 111 2345666655455555554432124577777754
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0056 Score=55.92 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++||.|+||+|.+|++++..|+..+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~ 27 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGN 27 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTC
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCC
Confidence 56899999999999999999998773
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.022 Score=50.76 Aligned_cols=108 Identities=16% Similarity=0.056 Sum_probs=59.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY------ 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~------ 167 (337)
++|.|+||+|.||.+++..|+..|. .|.+ .+++.++++....++.. ++.. ..| +.
T Consensus 4 k~vlVTGas~GIG~a~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~~~ 67 (235)
T 3l6e_A 4 GHIIVTGAGSGLGRALTIGLVERGH-----QVSM----MGRRYQRLQQQELLLGN-------AVIGIVADLAHHEDVDVA 67 (235)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHGG-------GEEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhcC-------CceEEECCCCCHHHHHHH
Confidence 5799999999999999999998875 2444 24555666554444422 1111 111 11
Q ss_pred -----cccCCCcEEEEecccCCC-C--CCch---hhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 -----ELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 -----eal~dADvVIitag~prk-~--g~~R---~dll~~N~~I----~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|.... + ..+. ...+..|..- .+...+.+.+. ++.||+++-
T Consensus 68 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~---~~~iv~isS 135 (235)
T 3l6e_A 68 FAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGER---GGVLANVLS 135 (235)
T ss_dssp HHHHHHHHCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT---CEEEEEECC
T ss_pred HHHHHHhcCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc---CCEEEEEeC
Confidence 122367999998886421 1 1121 2345556443 34444544442 346666663
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.14 Score=46.58 Aligned_cols=113 Identities=15% Similarity=0.089 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-C--cc-----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--PY----- 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~--~~----- 167 (337)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.+.. .++.... | +.
T Consensus 26 gk~~lVTGas~gIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~ 92 (271)
T 4ibo_A 26 GRTALVTGSSRGLGRAMAEGLAVAGA-----RILI----NGTDPSRVAQTVQEFRNVG----HDAEAVAFDVTSESEIIE 92 (271)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----CCSCHHHHHHHHHHHHHTT----CCEEECCCCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CceEEEEcCCCCHHHHHH
Confidence 35789999999999999999999875 2443 3456666666655565322 1222111 1 11
Q ss_pred ------cccCCCcEEEEecccCCCCC---Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ------ELFEDAEWALLIGAKPRGPG---MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 ------eal~dADvVIitag~prk~g---~~R~---dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|...... .+.. ..+..|+ .+.+...+.+.+. ..+.||+++-
T Consensus 93 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iV~isS 162 (271)
T 4ibo_A 93 AFARLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPR--GYGKIVNIGS 162 (271)
T ss_dssp HHHHHHHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEcc
Confidence 11236899999988643211 1211 2344553 3445556666653 3467777764
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.076 Score=48.49 Aligned_cols=113 Identities=12% Similarity=0.052 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cccc---
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL--- 169 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~ea--- 169 (337)
.++|.|+||+|.||.+++..|+..|. .|.+. +++.+.++..+.++.... .++.. ..| +.+.
T Consensus 33 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~~~~ 99 (275)
T 4imr_A 33 GRTALVTGSSRGIGAAIAEGLAGAGA-----HVILH----GVKPGSTAAVQQRIIASG----GTAQELAGDLSEAGAGTD 99 (275)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE----ESSTTTTHHHHHHHHHTT----CCEEEEECCTTSTTHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----cCCHHHHHHHHHHHHhcC----CeEEEEEecCCCHHHHHH
Confidence 36799999999999999999999875 25442 344455554444454321 12221 111 1111
Q ss_pred -c------CCCcEEEEecccCCCCC---Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 -F------EDAEWALLIGAKPRGPG---MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 -l------~dADvVIitag~prk~g---~~R~---dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+ ...|++|..+|...... .+.. ..+..|+ .+.+...+.+.+. ..+.||+++-
T Consensus 100 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~Iv~isS 168 (275)
T 4imr_A 100 LIERAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVAR--KWGRVVSIGS 168 (275)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEECC
Confidence 1 36899999888643211 1221 2344453 3455566666653 4567777764
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.027 Score=52.12 Aligned_cols=112 Identities=14% Similarity=0.068 Sum_probs=59.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc--chhhHHHhHHHhHhhhccCCcccEEEec-Ccc----cc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE--RSLQALEGVAMELEDSLFPLLREVKIGI-NPY----EL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d--~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~~~----ea 169 (337)
|||.|+||+|+||++++..|+..|. .|.+ ++.. ...+.++. +...... ...+...+ .+. ++
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~-----~V~~--~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~Dl~~~~~~~~~ 68 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGH-----DVII--LDNLCNSKRSVLPV----IERLGGK-HPTFVEGDIRNEALMTEI 68 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EECCSSCCTTHHHH----HHHHHTS-CCEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEE--EecCCCcchhHHHH----HHhhcCC-cceEEEccCCCHHHHHHH
Confidence 5899999999999999999998764 2433 2211 11122211 1111000 00111110 111 23
Q ss_pred cC--CCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 170 FE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 170 l~--dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++ +.|+||.++|..... .....+.+..|+.-...+.+.+.+. ... .||++|
T Consensus 69 ~~~~~~D~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~-~iv~~S 123 (338)
T 1udb_A 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVK-NFIFSS 123 (338)
T ss_dssp HHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCC-EEEEEE
T ss_pred hhccCCCEEEECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhc-CCC-eEEEEc
Confidence 33 589999988753210 0112345677888778888877775 333 555554
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.11 Score=46.65 Aligned_cols=115 Identities=13% Similarity=0.041 Sum_probs=64.2
Q ss_pred CCEEEEEcCCC-chHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--cccc--
Q 019713 96 MVNIAVSGAAG-MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYEL-- 169 (337)
Q Consensus 96 ~~KI~IIGAaG-~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~ea-- 169 (337)
.++|.|+||+| .+|.+++..|+..|. .|.+ .+++.+.++....++.+.. ..++... .| +.+.
T Consensus 22 ~k~vlITGasg~GIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dl~~~~~v~ 89 (266)
T 3o38_A 22 GKVVLVTAAAGTGIGSTTARRALLEGA-----DVVI----SDYHERRLGETRDQLADLG---LGRVEAVVCDVTSTEAVD 89 (266)
T ss_dssp TCEEEESSCSSSSHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTC---SSCEEEEECCTTCHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHCCC-----EEEE----ecCCHHHHHHHHHHHHhcC---CCceEEEEeCCCCHHHHH
Confidence 35899999877 599999999999875 2444 2455555555544453321 1122221 11 1111
Q ss_pred ---------cCCCcEEEEecccCCCCC---Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 ---------FEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 ---------l~dADvVIitag~prk~g---~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+...|++|..+|...... .+. ...+..|. .+.+...+.+.+. ...+.||+++-
T Consensus 90 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~~iv~~sS 161 (266)
T 3o38_A 90 ALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGV-DHGGVIVNNAS 161 (266)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTS-SCCEEEEEECC
T ss_pred HHHHHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEEeCC
Confidence 236799999988643211 121 12344453 3445555556553 35667777764
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.17 Score=45.33 Aligned_cols=116 Identities=18% Similarity=0.136 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~--~~e---- 168 (337)
.+++.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... +...++. +..| +.+
T Consensus 7 ~k~~lVTGas~GIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~ 76 (250)
T 3nyw_A 7 KGLAIITGASQGIGAVIAAGLATDGY-----RVVL----IARSKQNLEKVHDEIMRSN-KHVQEPIVLPLDITDCTKADT 76 (250)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHHTC-----EEEE----EESCHHHHHHHHHHHHHHC-TTSCCCEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHhc-cccCcceEEeccCCCHHHHHH
Confidence 35789999999999999999998875 2544 2456666666555554431 1101111 1111 111
Q ss_pred -------ccCCCcEEEEecccCCCC--CCch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -------LFEDAEWALLIGAKPRGP--GMER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -------al~dADvVIitag~prk~--g~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|..... ..+. ...+..|. .+.+...+.+.+. ..+.||+++-
T Consensus 77 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS 145 (250)
T 3nyw_A 77 EIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQ--KNGYIFNVAS 145 (250)
T ss_dssp HHHHHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEEcc
Confidence 223689999998864221 1211 12344453 3455555666653 4567777765
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.018 Score=52.43 Aligned_cols=115 Identities=14% Similarity=0.075 Sum_probs=62.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec---------Cc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NP 166 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t---------~~ 166 (337)
.++|.|+||+|.||.+++..|+..|. .|.+. +++.+.++..+.++....... ...++. .-
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~~~~--~~Dv~~~~~v~~~~~~~ 79 (271)
T 3tzq_B 11 NKVAIITGACGGIGLETSRVLARAGA-----RVVLA----DLPETDLAGAAASVGRGAVHH--VVDLTNEVSVRALIDFT 79 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ECTTSCHHHHHHHHCTTCEEE--ECCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----cCCHHHHHHHHHHhCCCeEEE--ECCCCCHHHHHHHHHHH
Confidence 35799999999999999999999875 25442 444455544433331100000 000000 00
Q ss_pred ccccCCCcEEEEecccCCC-CC----Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 YELFEDAEWALLIGAKPRG-PG----MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 ~eal~dADvVIitag~prk-~g----~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+...|++|..+|.... .+ .+. ...+..|+. +.+...+.+.+. ..+.||+++-
T Consensus 80 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~iv~isS 146 (271)
T 3tzq_B 80 IDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA--GGGAIVNISS 146 (271)
T ss_dssp HHHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred HHHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEECC
Confidence 1223378999999886421 11 111 234555544 445555555653 4567777764
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0042 Score=57.82 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=59.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCC--CCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--c---
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGP--DQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P--- 166 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e--~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~--- 166 (337)
+.|+|.|+||+|+||++++..|+..+.... ...|.+ ++ ++.+.... . . ..++.. ..| +
T Consensus 13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~--~~--r~~~~~~~----~---~---~~~~~~~~~Dl~d~~~ 78 (342)
T 2hrz_A 13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTL--ID--VFQPEAPA----G---F---SGAVDARAADLSAPGE 78 (342)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEE--EE--SSCCCCCT----T---C---CSEEEEEECCTTSTTH
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEE--EE--ccCCcccc----c---c---CCceeEEEcCCCCHHH
Confidence 346899999999999999999988762000 001332 22 22111110 0 0 011211 111 1
Q ss_pred -cccc-CCCcEEEEecccCCCC-CCchhhhHHhhHHHHHHHHHHHHhhcC---CCeEEEEeC
Q 019713 167 -YELF-EDAEWALLIGAKPRGP-GMERAGLLDINGQIFAEQGKALNAVAS---RNVKVIVVG 222 (337)
Q Consensus 167 -~eal-~dADvVIitag~prk~-g~~R~dll~~N~~I~~~i~~~I~~~a~---p~aivIvvt 222 (337)
.+++ .+.|+||.++|..... ..+..+.+..|+.-...+.+.+.+... +...||++|
T Consensus 79 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~S 140 (342)
T 2hrz_A 79 AEKLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTS 140 (342)
T ss_dssp HHHHHHTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred HHHHHhcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeC
Confidence 1234 4899999998754210 012233466677666777777666420 123566655
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.14 Score=45.84 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=61.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhH--HHhHHHhHhhhccCCcccEEE-ecC--cccc--
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA--LEGVAMELEDSLFPLLREVKI-GIN--PYEL-- 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~--l~g~a~DL~d~~~~~~~~v~i-~t~--~~ea-- 169 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ . +++.+. ++..+.++.... .++.. ..| +.+.
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~ 69 (258)
T 3a28_C 3 KVAMVTGGAQGIGRGISEKLAADGF-----DIAV--A--DLPQQEEQAAETIKLIEAAD----QKAVFVGLDVTDKANFD 69 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTC-----EEEE--E--ECGGGHHHHHHHHHHHHTTT----CCEEEEECCTTCHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE--E--eCCcchHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHH
Confidence 4789999999999999999998875 2444 2 333333 444434443211 12221 111 1111
Q ss_pred ---------cCCCcEEEEecccCCCCC---Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 ---------FEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 ---------l~dADvVIitag~prk~g---~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+...|++|..+|...... .+. ...+..|.. +.+...+.+.+. ..++.||+++-
T Consensus 70 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~iv~isS 141 (258)
T 3a28_C 70 SAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDEL-GVKGKIINAAS 141 (258)
T ss_dssp HHHHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCCEEEEECC
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCCcEEEEECc
Confidence 237899999988643211 111 223455533 455555666554 33256777764
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0047 Score=58.44 Aligned_cols=116 Identities=12% Similarity=0.012 Sum_probs=59.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchh---hHHHhHHHhHhhhccCCcccEEEe-cC--cc---
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFPLLREVKIG-IN--PY--- 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~---~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~--- 167 (337)
++|.|+||+|.||++++..|+..+. .|.+ ++.+... +.++....++.... ..++... .| +.
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~~r~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~Dl~d~~~~ 94 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGY-----EVHG--IVRRSSSFNTGRIEHLYKNPQAHI---EGNMKLHYGDLTDSTCL 94 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EECCCSSCCCTTTGGGC------------CEEEEECCTTCHHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC-----EEEE--EECCccccchhhHHHHhhhhcccc---CCCceEEEccCCCHHHH
Confidence 6899999999999999999998763 2433 2222110 11111100000000 0122211 11 11
Q ss_pred -cccCC--CcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCC-CeEEEEeC
Q 019713 168 -ELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASR-NVKVIVVG 222 (337)
Q Consensus 168 -eal~d--ADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p-~aivIvvt 222 (337)
+.+++ .|+||.++|..... ..+..+.+..|+.-...+.+.+.+.... ...||++|
T Consensus 95 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~S 155 (375)
T 1t2a_A 95 VKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS 155 (375)
T ss_dssp HHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred HHHHHhcCCCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEec
Confidence 23443 59999988754211 0122345667777777788877775211 14666665
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.092 Score=47.78 Aligned_cols=113 Identities=13% Similarity=0.124 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc-----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~----- 167 (337)
.++|.|+||+|.||.+++..|+..|. .|.+ . +++.+.++..+.++.... .++.. ..| +.
T Consensus 22 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~~~~~v~~ 88 (277)
T 2rhc_B 22 SEVALVTGATSGIGLEIARRLGKEGL-----RVFV--C--ARGEEGLRTTLKELREAG----VEADGRTCDVRSVPEIEA 88 (277)
T ss_dssp SCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHHhcC----CceEEEECCCCCHHHHHH
Confidence 35799999999999999999998875 2444 2 445555554444443321 11221 111 11
Q ss_pred ------cccCCCcEEEEecccCCCCC---Cc---hhhhHHhhHHHHHHHHHH------HHhhcCCCeEEEEeCC
Q 019713 168 ------ELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQIFAEQGKA------LNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 ------eal~dADvVIitag~prk~g---~~---R~dll~~N~~I~~~i~~~------I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|...... .+ -...+..|+.-...+.+. +.+. ..+.||+++-
T Consensus 89 ~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~--~~g~iv~isS 160 (277)
T 2rhc_B 89 LVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLER--GTGRIVNIAS 160 (277)
T ss_dssp HHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHH--TEEEEEEECC
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhc--CCeEEEEECc
Confidence 12337899999988643211 11 123455564443333433 3332 3467777764
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.16 Score=46.20 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=64.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc--------------chhhHHHhHHHhHhhhccCCcccEE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE--------------RSLQALEGVAMELEDSLFPLLREVK 161 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d--------------~~~~~l~g~a~DL~d~~~~~~~~v~ 161 (337)
.++|.|+||+|.||.+++..|+..|. .|.+. |.+ .+.+.++..+.++.... .++.
T Consensus 11 ~k~~lVTGas~gIG~aia~~la~~G~-----~V~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 79 (286)
T 3uve_A 11 GKVAFVTGAARGQGRSHAVRLAQEGA-----DIIAV--DICKPIRAGVVDTAIPASTPEDLAETADLVKGHN----RRIV 79 (286)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE--ECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT----CCEE
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----eEEEE--eccccccccccccccccCCHHHHHHHHHHHhhcC----CceE
Confidence 35799999999999999999999875 24442 221 12445554444343221 1222
Q ss_pred E-ecC--ccc-----------ccCCCcEEEEecccCCCCC----Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCe
Q 019713 162 I-GIN--PYE-----------LFEDAEWALLIGAKPRGPG----MERA---GLLDING----QIFAEQGKALNAVASRNV 216 (337)
Q Consensus 162 i-~t~--~~e-----------al~dADvVIitag~prk~g----~~R~---dll~~N~----~I~~~i~~~I~~~a~p~a 216 (337)
. ..| +.+ .+...|++|..+|...... .+.. ..+..|+ .+.+...+.+.+. ...+
T Consensus 80 ~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g 158 (286)
T 3uve_A 80 TAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAG-GRGG 158 (286)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCE
T ss_pred EEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCc
Confidence 2 111 111 2237899999988643221 1211 2344553 3455555666654 3456
Q ss_pred EEEEeCC
Q 019713 217 KVIVVGN 223 (337)
Q Consensus 217 ivIvvtN 223 (337)
.||+++-
T Consensus 159 ~iv~isS 165 (286)
T 3uve_A 159 SIILTSS 165 (286)
T ss_dssp EEEEECC
T ss_pred EEEEECc
Confidence 7777774
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.1 Score=46.70 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=62.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc-----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----- 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e----- 168 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ . +++.+.++....++.... .++.. ..| +.+
T Consensus 15 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~~ 81 (260)
T 2zat_A 15 KVALVTASTDGIGLAIARRLAQDGA-----HVVV--S--SRKQENVDRTVATLQGEG----LSVTGTVCHVGKAEDRERL 81 (260)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHHhcC----CceEEEEccCCCHHHHHHH
Confidence 5799999999999999999999875 2444 2 445455554444444321 12221 111 111
Q ss_pred ------ccCCCcEEEEecccCC--CC--CCc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 ------LFEDAEWALLIGAKPR--GP--GME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 ------al~dADvVIitag~pr--k~--g~~---R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+.|++|..+|... .+ ..+ -...+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 82 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~~g~iv~isS 151 (260)
T 2zat_A 82 VAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKR--GGGSVLIVSS 151 (260)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEec
Confidence 1237899999888532 11 111 1223455533 345555555553 3457777764
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.077 Score=48.25 Aligned_cols=117 Identities=12% Similarity=0.023 Sum_probs=62.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc---
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e--- 168 (337)
+.+++.|+||+|.||.+++..|+..|. .|.+.. ..+.+.++..+.++.... .++.. ..| +.+
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~G~-----~Vv~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~v~ 93 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASDGF-----TVVINY---AGKAAAAEEVAGKIEAAG----GKALTAQADVSDPAAVR 93 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHHTC-----EEEEEE---SSCSHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEEc---CCCHHHHHHHHHHHHhcC----CeEEEEEcCCCCHHHHH
Confidence 345789999999999999999998875 244321 223344444444444321 11211 111 111
Q ss_pred --------ccCCCcEEEEecccCC-CCC--Cc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 --------LFEDAEWALLIGAKPR-GPG--ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 --------al~dADvVIitag~pr-k~g--~~---R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|... .+- .+ -...+..|..-...+.+.+...-..++.||+++-
T Consensus 94 ~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS 162 (267)
T 3u5t_A 94 RLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMST 162 (267)
T ss_dssp HHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence 2237899999988642 221 11 1234556655444444444333233567777764
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.11 Score=42.53 Aligned_cols=66 Identities=21% Similarity=0.282 Sum_probs=40.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-Ccc-----ccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPY-----ELF 170 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~~~-----eal 170 (337)
.+|.|+|+ |.+|..++..|...+. .+.+ +|.++++++.. .+.. ..+.... .+. ..+
T Consensus 8 ~~viIiG~-G~~G~~la~~L~~~g~-----~v~v----id~~~~~~~~~----~~~g----~~~i~gd~~~~~~l~~a~i 69 (140)
T 3fwz_A 8 NHALLVGY-GRVGSLLGEKLLASDI-----PLVV----IETSRTRVDEL----RERG----VRAVLGNAANEEIMQLAHL 69 (140)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTC-----CEEE----EESCHHHHHHH----HHTT----CEEEESCTTSHHHHHHTTG
T ss_pred CCEEEECc-CHHHHHHHHHHHHCCC-----CEEE----EECCHHHHHHH----HHcC----CCEEECCCCCHHHHHhcCc
Confidence 58999995 9999999999988765 2544 35555655432 2111 1222211 111 236
Q ss_pred CCCcEEEEec
Q 019713 171 EDAEWALLIG 180 (337)
Q Consensus 171 ~dADvVIita 180 (337)
.+||+||++.
T Consensus 70 ~~ad~vi~~~ 79 (140)
T 3fwz_A 70 ECAKWLILTI 79 (140)
T ss_dssp GGCSEEEECC
T ss_pred ccCCEEEEEC
Confidence 7899999875
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.1 Score=43.29 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+|+ |.+|..++..|...+.
T Consensus 19 ~~~v~IiG~-G~iG~~la~~L~~~g~ 43 (155)
T 2g1u_A 19 SKYIVIFGC-GRLGSLIANLASSSGH 43 (155)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCcEEEECC-CHHHHHHHHHHHhCCC
Confidence 479999995 9999999999988764
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.089 Score=48.37 Aligned_cols=115 Identities=11% Similarity=-0.006 Sum_probs=62.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhh-HHHhHHHhHhhhccCCcccEEE-ecC--cc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ-ALEGVAMELEDSLFPLLREVKI-GIN--PY---- 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~-~l~g~a~DL~d~~~~~~~~v~i-~t~--~~---- 167 (337)
.++|.|+||+|.||.+++..|+..|. .|.+. + ++.+ ..+.....++.. ..++.. ..| +.
T Consensus 47 gk~vlVTGas~GIG~aia~~la~~G~-----~V~~~--~--r~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~ 113 (291)
T 3ijr_A 47 GKNVLITGGDSGIGRAVSIAFAKEGA-----NIAIA--Y--LDEEGDANETKQYVEKE----GVKCVLLPGDLSDEQHCK 113 (291)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE--E--SSCHHHHHHHHHHHHTT----TCCEEEEESCTTSHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE--e--CCchHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHH
Confidence 35899999999999999999999875 25443 2 2222 222222222221 112222 111 11
Q ss_pred -------cccCCCcEEEEecccCCCCC----Cc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 -------ELFEDAEWALLIGAKPRGPG----ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 -------eal~dADvVIitag~prk~g----~~---R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|.....+ .+ -...+..|+.-...+.+.+..+-...+.||+++-
T Consensus 114 ~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS 183 (291)
T 3ijr_A 114 DIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS 183 (291)
T ss_dssp HHHHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred HHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence 12236899999887542111 12 1234666765555566655554334557777764
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.039 Score=51.64 Aligned_cols=117 Identities=15% Similarity=0.028 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e---- 168 (337)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.++++....++.... . ..++... .| +.+
T Consensus 8 ~k~vlVTGas~gIG~~la~~l~~~G~-----~Vv~----~~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~Dl~~~~~v~~ 76 (319)
T 3ioy_A 8 GRTAFVTGGANGVGIGLVRQLLNQGC-----KVAI----ADIRQDSIDKALATLEAEG-S-GPEVMGVQLDVASREGFKM 76 (319)
T ss_dssp TCEEEEETTTSTHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHT-C-GGGEEEEECCTTCHHHHHH
T ss_pred CCEEEEcCCchHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C-CCeEEEEECCCCCHHHHHH
Confidence 35899999999999999999999875 2544 2455566655544454321 1 1122211 11 111
Q ss_pred c-------cCCCcEEEEecccCCC-CC--Cc---hhhhHHhhH----HHHHHHHHHHHhh----cCCCeEEEEeCC
Q 019713 169 L-------FEDAEWALLIGAKPRG-PG--ME---RAGLLDING----QIFAEQGKALNAV----ASRNVKVIVVGN 223 (337)
Q Consensus 169 a-------l~dADvVIitag~prk-~g--~~---R~dll~~N~----~I~~~i~~~I~~~----a~p~aivIvvtN 223 (337)
. +...|++|..+|.... +- .+ -.+.+..|+ .+.+.+.+.+.+. ....+.||+++-
T Consensus 77 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS 152 (319)
T 3ioy_A 77 AADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTAS 152 (319)
T ss_dssp HHHHHHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECC
T ss_pred HHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecc
Confidence 1 2366999999886421 11 11 123444453 3444455555432 013556777763
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.031 Score=49.88 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..|.
T Consensus 8 k~vlITGasggiG~~la~~l~~~G~ 32 (264)
T 2pd6_A 8 ALALVTGAGSGIGRAVSVRLAGEGA 32 (264)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC
Confidence 5899999999999999999998774
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.027 Score=52.57 Aligned_cols=102 Identities=12% Similarity=0.158 Sum_probs=54.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--c----cc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--P----YE 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~----~e 168 (337)
|||.|+||+|+||++++..|+.. +. .|.+ ++.....+.++.. .++.+ ..++... .| + .+
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~-----~V~~--~~r~~~~~~~~~~-~~~~~-----~~~~~~~~~Dl~d~~~~~~ 67 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQD-----TVVN--IDKLTYAGNLESL-SDISE-----SNRYNFEHADICDSAEITR 67 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSC-----EEEE--EECCCTTCCGGGG-TTTTT-----CTTEEEEECCTTCHHHHHH
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCC-----eEEE--EecCCCCCchhhh-hhhhc-----CCCeEEEECCCCCHHHHHH
Confidence 58999999999999999999886 43 2433 2221111111111 11111 0122221 11 1 13
Q ss_pred ccC--CCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhh
Q 019713 169 LFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAV 211 (337)
Q Consensus 169 al~--dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~ 211 (337)
.++ ++|+||.++|..... ..+..+.+..|+.-...+.+.+.+.
T Consensus 68 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~ 114 (361)
T 1kew_A 68 IFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKY 114 (361)
T ss_dssp HHHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHhhcCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 344 899999998754210 0122345667777667777766654
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.046 Score=48.96 Aligned_cols=110 Identities=13% Similarity=0.030 Sum_probs=61.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--cc----cc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY----EL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~----ea 169 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ .+.+. + +....++.... .++... .| +. +.
T Consensus 5 k~vlVTGas~giG~~ia~~l~~~G~-----~V~~--~~r~~--~--~~~~~~l~~~~----~~~~~~~~D~~~~~~v~~~ 69 (255)
T 2q2v_A 5 KTALVTGSTSGIGLGIAQVLARAGA-----NIVL--NGFGD--P--APALAEIARHG----VKAVHHPADLSDVAQIEAL 69 (255)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTC-----EEEE--ECSSC--C--HHHHHHHHTTS----CCEEEECCCTTSHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE--EeCCc--h--HHHHHHHHhcC----CceEEEeCCCCCHHHHHHH
Confidence 5799999999999999999998875 2443 33322 2 11222232211 112211 11 11 22
Q ss_pred c-------CCCcEEEEecccCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 F-------EDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 l-------~dADvVIitag~prk~g---~~---R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+ .+.|++|..+|...... .+ -...+..|.. +.+.+.+.+.+. ..+.||+++-
T Consensus 70 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~~g~iv~isS 138 (255)
T 2q2v_A 70 FALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRAR--NWGRIINIAS 138 (255)
T ss_dssp HHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEEcC
Confidence 2 27999999988643211 11 1234556655 666677777663 3467777774
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.016 Score=53.72 Aligned_cols=75 Identities=20% Similarity=0.190 Sum_probs=41.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEE-eccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALK-LLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~-L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
+++||+|+||+|.||..++..+...+- ..|. .+ |.+.+.+.+ .|+.+........+.++++..+.++++
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~------~elva~~--d~~~~~~~g--~d~~~~~g~~~~~v~~~~dl~~~l~~~ 73 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEG------VQLGAAL--EREGSSLLG--SDAGELAGAGKTGVTVQSSLDAVKDDF 73 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTT------EECCCEE--CCTTCTTCS--CCTTCSSSSSCCSCCEESCSTTTTTSC
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCC------CEEEEEE--ecCchhhhh--hhHHHHcCCCcCCceecCCHHHHhcCC
Confidence 457999999889999999988775332 2221 12 333222111 122211100011344555556677899
Q ss_pred cEEE-Ee
Q 019713 174 EWAL-LI 179 (337)
Q Consensus 174 DvVI-it 179 (337)
|+|| ++
T Consensus 74 DvVIDft 80 (273)
T 1dih_A 74 DVFIDFT 80 (273)
T ss_dssp SEEEECS
T ss_pred CEEEEcC
Confidence 9999 54
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.026 Score=51.82 Aligned_cols=112 Identities=10% Similarity=0.054 Sum_probs=62.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcc---------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY--------- 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~--------- 167 (337)
++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... .-+..-..+.
T Consensus 30 k~vlVTGas~gIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~Dv~d~~~v~~~~~~ 96 (277)
T 3gvc_A 30 KVAIVTGAGAGIGLAVARRLADEGC-----HVLC----ADIDGDAADAAATKIGCGA----AACRVDVSDEQQIIAMVDA 96 (277)
T ss_dssp CEEEETTTTSTHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHCSSC----EEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHcCCcc----eEEEecCCCHHHHHHHHHH
Confidence 5789999999999999999999875 2444 2445555554443331100 0011000111
Q ss_pred --cccCCCcEEEEecccCCC-C--CCch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 --ELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 --eal~dADvVIitag~prk-~--g~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|.... + ..+. ...+..|+. +.+...+.+.+. ..+.||+++-
T Consensus 97 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~Iv~isS 162 (277)
T 3gvc_A 97 CVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIER--GGGAIVNLSS 162 (277)
T ss_dssp HHHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEcc
Confidence 223478999999886421 1 1122 233555543 455555666653 4567777764
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.027 Score=58.15 Aligned_cols=114 Identities=11% Similarity=-0.012 Sum_probs=61.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch--hhHHHhHHHhHhhhccCCcccEEEec-Cc----c
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELEDSLFPLLREVKIGI-NP----Y 167 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~--~~~l~g~a~DL~d~~~~~~~~v~i~t-~~----~ 167 (337)
++++|.|+||+|.||++++..|+..+. .|.+ ++.... .+.++ ++...... ...+.... .+ .
T Consensus 10 ~~~~ilVTGatG~IG~~l~~~L~~~G~-----~V~~--~~r~~~~~~~~~~----~l~~~~~~-~v~~v~~Dl~d~~~l~ 77 (699)
T 1z45_A 10 TSKIVLVTGGAGYIGSHTVVELIENGY-----DCVV--ADNLSNSTYDSVA----RLEVLTKH-HIPFYEVDLCDRKGLE 77 (699)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EECCSSCCTHHHH----HHHHHHTS-CCCEEECCTTCHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcC-----EEEE--EECCCcchHHHHH----HHhhccCC-ceEEEEcCCCCHHHHH
Confidence 357999999999999999999998764 2443 222111 11111 11111100 00111110 11 2
Q ss_pred cccC--CCcEEEEecccCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 168 ELFE--DAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 168 eal~--dADvVIitag~prk~g--~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++++ ++|+||.+++...... ....+.+..|+.-...+.+.+.+. ... .||++|
T Consensus 78 ~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~~-~iV~~S 134 (699)
T 1z45_A 78 KVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY-NVS-KFVFSS 134 (699)
T ss_dssp HHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TCC-EEEEEE
T ss_pred HHHHhCCCCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEEC
Confidence 3345 7999999887532110 112345777888778888888775 333 555555
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.02 Score=51.33 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc-----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~----- 167 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.++++..+.++.. ++.. ..| +.
T Consensus 9 ~k~vlITGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~ 72 (261)
T 3n74_A 9 GKVALITGAGSGFGEGMAKRFAKGGA-----KVVI----VDRDKAGAERVAGEIGD-------AALAVAADISKEADVDA 72 (261)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCT-------TEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHhCC-------ceEEEEecCCCHHHHHH
Confidence 46899999999999999999998875 2444 24555666554443321 1111 111 11
Q ss_pred ------cccCCCcEEEEecccCCCCC----Cchh---hhHHhh----HHHHHHHHHHHHhhc--CCCeEEEEeCC
Q 019713 168 ------ELFEDAEWALLIGAKPRGPG----MERA---GLLDIN----GQIFAEQGKALNAVA--SRNVKVIVVGN 223 (337)
Q Consensus 168 ------eal~dADvVIitag~prk~g----~~R~---dll~~N----~~I~~~i~~~I~~~a--~p~aivIvvtN 223 (337)
+.+...|++|..+|....++ .+.. ..+..| ..+.+.+.+.+.+.. ...+.||+++-
T Consensus 73 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS 147 (261)
T 3n74_A 73 AVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVAS 147 (261)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHHHHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCc
Confidence 12236799999988643222 1111 234444 334555556665531 12456777764
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.057 Score=48.83 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=31.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhH
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL 149 (337)
++|.|+||+|.+|.+++..|+..|. .|.+. +++.++++..+.++
T Consensus 7 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~ 50 (278)
T 1spx_A 7 KVAIITGSSNGIGRATAVLFAREGA-----KVTIT----GRHAERLEETRQQI 50 (278)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHH
Confidence 5799999999999999999998775 24442 44555555444444
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.033 Score=52.41 Aligned_cols=69 Identities=20% Similarity=0.216 Sum_probs=43.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEE-eccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC-
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALK-LLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE- 171 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~-L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~- 171 (337)
.+++||+|||+ |.+|...+..|...+- +.+. +. |++.++++..+.++ . +..+++..+.++
T Consensus 2 ~~~~rvgiiG~-G~~g~~~~~~l~~~~~------~~l~av~--d~~~~~~~~~a~~~-------g--~~~~~~~~~~l~~ 63 (344)
T 3euw_A 2 SLTLRIALFGA-GRIGHVHAANIAANPD------LELVVIA--DPFIEGAQRLAEAN-------G--AEAVASPDEVFAR 63 (344)
T ss_dssp -CCEEEEEECC-SHHHHHHHHHHHHCTT------EEEEEEE--CSSHHHHHHHHHTT-------T--CEEESSHHHHTTC
T ss_pred CCceEEEEECC-cHHHHHHHHHHHhCCC------cEEEEEE--CCCHHHHHHHHHHc-------C--CceeCCHHHHhcC
Confidence 45689999995 9999999988876432 2222 23 45556655433211 1 344455556666
Q ss_pred -CCcEEEEec
Q 019713 172 -DAEWALLIG 180 (337)
Q Consensus 172 -dADvVIita 180 (337)
++|+|+++.
T Consensus 64 ~~~D~V~i~t 73 (344)
T 3euw_A 64 DDIDGIVIGS 73 (344)
T ss_dssp SCCCEEEECS
T ss_pred CCCCEEEEeC
Confidence 899999864
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.1 Score=47.52 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc-----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~----- 167 (337)
.++|.|+||+|.||.+++..|+..|. .|.+. +++.+.++..+.++.... . .++.. ..| +.
T Consensus 27 ~k~~lVTGas~GIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~-~--~~~~~~~~Dv~~~~~v~~ 94 (277)
T 4fc7_A 27 DKVAFITGGGSGIGFRIAEIFMRHGC-----HTVIA----SRSLPRVLTAARKLAGAT-G--RRCLPLSMDVRAPPAVMA 94 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTC-----EEEEE----ESCHHHHHHHHHHHHHHH-S--SCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHHhc-C--CcEEEEEcCCCCHHHHHH
Confidence 35899999999999999999998775 25442 445555554444453321 1 11221 111 11
Q ss_pred ------cccCCCcEEEEecccCCC-CC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ------ELFEDAEWALLIGAKPRG-PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 ------eal~dADvVIitag~prk-~g--~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|.... +- .+. ...+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 95 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~g~iv~isS 164 (277)
T 4fc7_A 95 AVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRD--HGGVIVNITA 164 (277)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHH--HCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEECc
Confidence 123378999998885431 11 111 123455543 334444444443 3567777764
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.025 Score=50.82 Aligned_cols=109 Identities=13% Similarity=0.156 Sum_probs=61.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY------ 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~------ 167 (337)
++|.|+||+|.+|.+++..|+..|. .|.+. +++.+.++....++.. ++.. ..| +.
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~-------~~~~~~~Dv~~~~~v~~~ 64 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGH-----KVIAT----GRRQERLQELKDELGD-------NLYIAQLDVRNRAAIEEM 64 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHCT-------TEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhcC-------ceEEEEcCCCCHHHHHHH
Confidence 3688999999999999999999874 24442 4454555443333321 1111 111 11
Q ss_pred -----cccCCCcEEEEecccCC--CCC--Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 -----ELFEDAEWALLIGAKPR--GPG--MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 -----eal~dADvVIitag~pr--k~g--~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|... .+- .+. ...+..|. .+.+...+.+.+. ..+.||+++-
T Consensus 65 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~--~~g~iv~isS 134 (248)
T 3asu_A 65 LASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER--NHGHIINIGS 134 (248)
T ss_dssp HHTSCTTTCCCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred HHHHHHhCCCCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCceEEEEcc
Confidence 12347899999988642 221 111 22345553 3455555666553 3456777764
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.055 Score=53.03 Aligned_cols=136 Identities=11% Similarity=-0.027 Sum_probs=77.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecC-c-----ccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-P-----YEL 169 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~-~-----~ea 169 (337)
.++|.|+|+ |.+|..++..|...+. ++.+ +|.++++++.. .+.. .++..+.. + ...
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~-----~vvv----Id~d~~~v~~~----~~~g----~~vi~GDat~~~~L~~ag 65 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGV-----KMVV----LDHDPDHIETL----RKFG----MKVFYGDATRMDLLESAG 65 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTC-----CEEE----EECCHHHHHHH----HHTT----CCCEESCTTCHHHHHHTT
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCC-----CEEE----EECCHHHHHHH----HhCC----CeEEEcCCCCHHHHHhcC
Confidence 468999995 9999999999988775 3544 35555555432 2111 12222211 1 124
Q ss_pred cCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC-CchhHHHHHHHHCCCCCCCeEEecC
Q 019713 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN-PCNTNALICLKNAPSIPAKNFHALT 248 (337)
Q Consensus 170 l~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN-Pvd~~t~i~~k~s~~~p~kvIG~gT 248 (337)
+.+||+||++.+. -..| ..++..+++. .|+..||+-+| +-+. ..+.+ . +.. .+| .-+
T Consensus 66 i~~A~~viv~~~~-----------~~~n----~~i~~~ar~~-~p~~~Iiara~~~~~~--~~L~~-~-Gad-~Vi-~~~ 123 (413)
T 3l9w_A 66 AAKAEVLINAIDD-----------PQTN----LQLTEMVKEH-FPHLQIIARARDVDHY--IRLRQ-A-GVE-KPE-RET 123 (413)
T ss_dssp TTTCSEEEECCSS-----------HHHH----HHHHHHHHHH-CTTCEEEEEESSHHHH--HHHHH-T-TCS-SCE-ETT
T ss_pred CCccCEEEECCCC-----------hHHH----HHHHHHHHHh-CCCCeEEEEECCHHHH--HHHHH-C-CCC-EEE-Ccc
Confidence 7899999987532 1334 3344455565 68766655544 4322 22333 4 343 343 233
Q ss_pred chhHHHHHHHHHHHhCCCccccc
Q 019713 249 RLDENRAKCQLALKAGVFYDKVS 271 (337)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~~~~V~ 271 (337)
..-+.++-..+-..+|+++..+.
T Consensus 124 ~~~a~~la~~~L~~lg~~~~~~~ 146 (413)
T 3l9w_A 124 FEGALKTGRLALESLGLGPYEAR 146 (413)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHH
Confidence 33356677777778888886665
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0071 Score=55.80 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+|+||.|+||+|.+|++++..|+..+.
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~ 29 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSH 29 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTC
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCC
Confidence 357899999999999999999998763
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.12 Score=46.91 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e---- 168 (337)
.++|.|+||+|.||.+++..|+..|. .|.+. +. .+.+.++....++.... .++.. ..| +.+
T Consensus 28 ~k~vlVTGas~gIG~aia~~la~~G~-----~V~~~--~~-~~~~~~~~~~~~~~~~~----~~~~~~~~D~~d~~~v~~ 95 (269)
T 4dmm_A 28 DRIALVTGASRGIGRAIALELAAAGA-----KVAVN--YA-SSAGAADEVVAAIAAAG----GEAFAVKADVSQESEVEA 95 (269)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE--ES-SCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE--eC-CChHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHH
Confidence 35788999999999999999999875 24442 11 13344444444444321 11221 111 111
Q ss_pred -------ccCCCcEEEEecccCCCCC---Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -------LFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -------al~dADvVIitag~prk~g---~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|...... .+. ...+..|+ .+.+...+.+.+. ..+.||+++-
T Consensus 96 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS 165 (269)
T 4dmm_A 96 LFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQ--RSGRIINIAS 165 (269)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECc
Confidence 2237899999988643221 111 12344453 3455555656553 3456777763
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0072 Score=54.11 Aligned_cols=102 Identities=14% Similarity=0.152 Sum_probs=58.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC--Cc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--AE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d--AD 174 (337)
|||.|+||+|.+|++++..|+. +. .|.+. +++.+...+...|+.|.. ...+.+++ .|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g~-----~V~~~----~r~~~~~~~~~~Dl~~~~-----------~~~~~~~~~~~d 59 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-RH-----EVIKV----YNSSEIQGGYKLDLTDFP-----------RLEDFIIKKRPD 59 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-TS-----CEEEE----ESSSCCTTCEECCTTSHH-----------HHHHHHHHHCCS
T ss_pred CEEEEECCCChhHHHHHHHHhc-CC-----eEEEe----cCCCcCCCCceeccCCHH-----------HHHHHHHhcCCC
Confidence 4899999999999999999984 42 24432 222111011111111110 01233444 99
Q ss_pred EEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 175 vVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+||.++|..... ..+..+.+..|..-...+.+.+.+. ++.+|++|
T Consensus 60 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~iv~~S 106 (273)
T 2ggs_A 60 VIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVI---DSYIVHIS 106 (273)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT---TCEEEEEE
T ss_pred EEEECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEe
Confidence 999998754211 0123345677887788888887764 23666665
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.15 Score=45.87 Aligned_cols=115 Identities=11% Similarity=0.084 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e---- 168 (337)
.++|.|+||+|.||.+++..|+..|. .+.+. ..++.+.++....++.... .++.+. .| +.+
T Consensus 26 ~k~vlVTGas~gIG~~la~~l~~~G~-----~v~i~---~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~~~~ 93 (267)
T 4iiu_A 26 SRSVLVTGASKGIGRAIARQLAADGF-----NIGVH---YHRDAAGAQETLNAIVANG----GNGRLLSFDVANREQCRE 93 (267)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE---ESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEEE---eCCchHHHHHHHHHHHhcC----CceEEEEecCCCHHHHHH
Confidence 35799999999999999999999875 24332 1234444444444443321 112211 11 111
Q ss_pred -------ccCCCcEEEEecccCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -------LFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -------al~dADvVIitag~prk~g---~~---R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|...... .+ -...+..|.. +.+...+.+.+. ...+.||+++-
T Consensus 94 ~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~g~iv~isS 164 (267)
T 4iiu_A 94 VLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGA-RQGGRIITLSS 164 (267)
T ss_dssp HHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECC
T ss_pred HHHHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCcEEEEEcc
Confidence 1237899999988653221 11 1233555533 333334444432 45678888774
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.023 Score=47.15 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.||.|+|+ |.+|+.++..|...+.
T Consensus 4 ~~vlI~G~-G~vG~~la~~L~~~g~ 27 (153)
T 1id1_A 4 DHFIVCGH-SILAINTILQLNQRGQ 27 (153)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CcEEEECC-CHHHHHHHHHHHHCCC
Confidence 58999995 9999999999988664
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.15 Score=45.91 Aligned_cols=115 Identities=12% Similarity=0.044 Sum_probs=64.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e---- 168 (337)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.++++..+.++.... +- .++.. ..| +.+
T Consensus 8 ~k~~lVTGas~GIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~~-~~~~~~~~Dv~~~~~v~~ 76 (265)
T 3lf2_A 8 EAVAVVTGGSSGIGLATVELLLEAGA-----AVAF----CARDGERLRAAESALRQRF-PG-ARLFASVCDVLDALQVRA 76 (265)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHS-TT-CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhc-CC-ceEEEEeCCCCCHHHHHH
Confidence 35799999999999999999999875 2544 2455566665555555421 11 11221 111 111
Q ss_pred -------ccCCCcEEEEecccCCC-C--CCch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -------LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -------al~dADvVIitag~prk-~--g~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|.... + ..+. ...+..|.. +.+...+.+.+ ...+.||+++-
T Consensus 77 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~--~~~g~iv~isS 146 (265)
T 3lf2_A 77 FAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLES--RADAAIVCVNS 146 (265)
T ss_dssp HHHHHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT--STTEEEEEEEE
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCeEEEEECC
Confidence 23467999999886431 1 1222 223555544 34444454544 24567777663
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.2 Score=45.41 Aligned_cols=116 Identities=13% Similarity=0.127 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc-----------chhhHHHhHHHhHhhhccCCcccEEEe-
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-----------RSLQALEGVAMELEDSLFPLLREVKIG- 163 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d-----------~~~~~l~g~a~DL~d~~~~~~~~v~i~- 163 (337)
.+++.|+||+|.||.+++..|+..|. .|.+ +|.. .+.+.++..+.++.... .++...
T Consensus 11 ~k~~lVTGas~GIG~a~a~~la~~G~-----~V~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 79 (277)
T 3tsc_A 11 GRVAFITGAARGQGRAHAVRMAAEGA-----DIIA--VDIAGKLPSCVPYDPASPDDLSETVRLVEAAN----RRIVAAV 79 (277)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE--EECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT----CCEEEEE
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCC-----EEEE--EeccccccccccccccCHHHHHHHHHHHHhcC----CeEEEEE
Confidence 35799999999999999999999875 2444 2221 13445554444444321 122211
Q ss_pred cC--cc-----------cccCCCcEEEEecccCCCCC---Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEE
Q 019713 164 IN--PY-----------ELFEDAEWALLIGAKPRGPG---MERA---GLLDING----QIFAEQGKALNAVASRNVKVIV 220 (337)
Q Consensus 164 t~--~~-----------eal~dADvVIitag~prk~g---~~R~---dll~~N~----~I~~~i~~~I~~~a~p~aivIv 220 (337)
.| +. +.+...|++|..+|...... .+.. ..+..|. .+.+...+.+.+. ...+.||+
T Consensus 80 ~D~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~~g~iv~ 158 (277)
T 3tsc_A 80 VDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEG-GRGGSIIL 158 (277)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-CCCCEEEE
Confidence 11 11 12346899999988643221 1211 2344553 3556666667664 44677888
Q ss_pred eCC
Q 019713 221 VGN 223 (337)
Q Consensus 221 vtN 223 (337)
++-
T Consensus 159 isS 161 (277)
T 3tsc_A 159 ISS 161 (277)
T ss_dssp ECC
T ss_pred Ecc
Confidence 774
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.15 Score=45.64 Aligned_cols=26 Identities=15% Similarity=0.037 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 16 ~k~vlITGasggiG~~~a~~l~~~G~ 41 (278)
T 2bgk_A 16 DKVAIITGGAGGIGETTAKLFVRYGA 41 (278)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 35899999999999999999998874
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.24 Score=45.30 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc-chhhHHHhHHHhHh
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-RSLQALEGVAMELE 150 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d-~~~~~l~g~a~DL~ 150 (337)
.++|.|+||+|.||.+++..|+..|. .|.+. + ++.+.++..+.++.
T Consensus 9 ~k~~lVTGas~GIG~aia~~la~~G~-----~V~~~----~~r~~~~~~~~~~~l~ 55 (291)
T 1e7w_A 9 VPVALVTGAAKRLGRSIAEGLHAEGY-----AVCLH----YHRSAAEANALSATLN 55 (291)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE----ESSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----eEEEE----cCCCHHHHHHHHHHHh
Confidence 35799999999999999999998875 24442 3 45555554444453
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0082 Score=53.51 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=24.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+.++|.|+||+|.||.+++..|+..|.
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~ 32 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNW 32 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCC
Confidence 3456899999999999999999998774
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.11 Score=47.50 Aligned_cols=113 Identities=17% Similarity=0.074 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-C--cc-----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--PY----- 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~--~~----- 167 (337)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.+.++..+.++.... .++.... | +.
T Consensus 8 gk~vlVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~ 74 (280)
T 3tox_A 8 GKIAIVTGASSGIGRAAALLFAREGA-----KVVV----TARNGNALAELTDEIAGGG----GEAAALAGDVGDEALHEA 74 (280)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----CCSCHHHHHHHHHHHTTTT----CCEEECCCCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHH
Confidence 35788999999999999999999875 2443 3456666665555554321 1222211 1 11
Q ss_pred ------cccCCCcEEEEecccCCCCC----Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ------ELFEDAEWALLIGAKPRGPG----MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 ------eal~dADvVIitag~prk~g----~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|.....+ .+. ...+..|+ .+.+...+.+.+. ..+.||+++-
T Consensus 75 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS 145 (280)
T 3tox_A 75 LVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAAL--GGGSLTFTSS 145 (280)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEcC
Confidence 12337899999988532111 121 12344443 3455555666653 4567777764
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.018 Score=50.64 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..+.
T Consensus 3 k~vlVtGasggiG~~la~~l~~~G~ 27 (242)
T 1uay_A 3 RSALVTGGASGLGRAAALALKARGY 27 (242)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTC
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC
Confidence 5899999999999999999998774
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.16 Score=47.72 Aligned_cols=115 Identities=15% Similarity=0.120 Sum_probs=62.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc-ccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc----c
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG-SERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----E 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d-~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~----e 168 (337)
++|.|+||+|.||.+++..|+..|. .|.+...+ .+++.++++.....+.... . ++.. ..| +. +
T Consensus 6 k~vlVTGas~GIG~aia~~L~~~G~-----~V~~~~r~~~~r~~~~~~~l~~~~~~~~-~---~~~~~~~Dvtd~~~v~~ 76 (324)
T 3u9l_A 6 KIILITGASSGFGRLTAEALAGAGH-----RVYASMRDIVGRNASNVEAIAGFARDND-V---DLRTLELDVQSQVSVDR 76 (324)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTC-----EEEEEESCTTTTTHHHHHHHHHHHHHHT-C---CEEEEECCTTCHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEEecCcccccCHHHHHHHHHHHHhcC-C---cEEEEEeecCCHHHHHH
Confidence 5789999999999999999998875 24433222 2344555554433333221 1 1211 111 11 2
Q ss_pred cc-------CCCcEEEEecccCC-CCC--Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeC
Q 019713 169 LF-------EDAEWALLIGAKPR-GPG--ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 169 al-------~dADvVIitag~pr-k~g--~~---R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.+ ...|++|..+|... ++- .+ -...+..|+. +.+...+.+.+. ..+.||+++
T Consensus 77 ~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~--~~g~iV~is 145 (324)
T 3u9l_A 77 AIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQ--KHGLLIWIS 145 (324)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEC
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEEe
Confidence 22 38999999988532 121 11 1233555543 445555555664 345677766
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0027 Score=60.21 Aligned_cols=25 Identities=16% Similarity=0.020 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|+||++++..|+..|.
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~ 53 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGY 53 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998764
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.016 Score=51.02 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=41.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec--C----ccccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N----PYELF 170 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t--~----~~eal 170 (337)
|||.|+|+ |.+|++++..|...+. .+.+ +|.++++++..+.+. . ..+.... + ....+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~-----~v~v----id~~~~~~~~l~~~~-----~--~~~i~gd~~~~~~l~~a~i 63 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKY-----GVVI----INKDRELCEEFAKKL-----K--ATIIHGDGSHKEILRDAEV 63 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTC-----CEEE----EESCHHHHHHHHHHS-----S--SEEEESCTTSHHHHHHHTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-----eEEE----EECCHHHHHHHHHHc-----C--CeEEEcCCCCHHHHHhcCc
Confidence 58999995 9999999999988765 2554 355556654322111 0 1122111 1 12347
Q ss_pred CCCcEEEEec
Q 019713 171 EDAEWALLIG 180 (337)
Q Consensus 171 ~dADvVIita 180 (337)
++||+||++.
T Consensus 64 ~~ad~vi~~~ 73 (218)
T 3l4b_C 64 SKNDVVVILT 73 (218)
T ss_dssp CTTCEEEECC
T ss_pred ccCCEEEEec
Confidence 8999999875
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.1 Score=47.09 Aligned_cols=45 Identities=20% Similarity=0.272 Sum_probs=31.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc-hhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~-~~~~l~g~a~DL~ 150 (337)
++|.|+||+|.||.+++..|+..|. .|.+. ++ +.+.++..+.++.
T Consensus 12 k~~lVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~ 57 (276)
T 1mxh_A 12 PAAVITGGARRIGHSIAVRLHQQGF-----RVVVH----YRHSEGAAQRLVAELN 57 (276)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE----ESSCHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----eCCChHHHHHHHHHHH
Confidence 5799999999999999999998875 24442 34 4455554444444
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.01 Score=55.44 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=57.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC------cccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN------PYEL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~------~~ea 169 (337)
+||.|+||+|++|++++..|+..+-......|.. ++ ++..... +.+ .++.. ..| ..++
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~--~~--r~~~~~~-----~~~------~~~~~~~~Dl~d~~~~~~~ 66 (364)
T 2v6g_A 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYG--VA--RRTRPAW-----HED------NPINYVQCDISDPDDSQAK 66 (364)
T ss_dssp EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEE--EE--SSCCCSC-----CCS------SCCEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEE--Ee--CCCCccc-----ccc------CceEEEEeecCCHHHHHHH
Confidence 5899999999999999999877551000002332 22 2211111 000 01111 111 1244
Q ss_pred cCC---CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhh
Q 019713 170 FED---AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (337)
Q Consensus 170 l~d---ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~ 211 (337)
+++ +|+||.+++... .+..+....|+.-...+.+.+.+.
T Consensus 67 ~~~~~~~d~vih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~ 108 (364)
T 2v6g_A 67 LSPLTDVTHVFYVTWANR---STEQENCEANSKMFRNVLDAVIPN 108 (364)
T ss_dssp HTTCTTCCEEEECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCCCEEEECCCCCc---chHHHHHHHhHHHHHHHHHHHHHh
Confidence 666 999999987542 234556788888888888888775
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.094 Score=46.62 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..|.
T Consensus 15 k~vlITGasggiG~~~a~~l~~~G~ 39 (265)
T 1h5q_A 15 KTIIVTGGNRGIGLAFTRAVAAAGA 39 (265)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTE
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC
Confidence 5799999999999999999998774
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.021 Score=51.37 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHc
Q 019713 98 NIAVSGAAGMIANHLLFKLAAG 119 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~ 119 (337)
||.|+||+|.+|++++..|+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~ 22 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKT 22 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTT
T ss_pred CEEEEcCCchHHHHHHHHHHhh
Confidence 5899999999999999999875
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.053 Score=47.85 Aligned_cols=113 Identities=13% Similarity=0.034 Sum_probs=60.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-Ccc----c--
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPY----E-- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~~~----e-- 168 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ + +++.++++....++.. .++...+ .+. +
T Consensus 7 ~k~vlITGasggiG~~~a~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~------~~~~~~D~~~~~~~~~~~ 71 (244)
T 3d3w_A 7 GRRVLVTGAGKGIGRGTVQALHATGA-----RVVA--V--SRTQADLDSLVRECPG------IEPVCVDLGDWEATERAL 71 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHHHHHHSTT------CEEEECCTTCHHHHHHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHcCC------CCEEEEeCCCHHHHHHHH
Confidence 35899999999999999999998774 2443 2 3444444433222211 0111110 111 1
Q ss_pred -ccCCCcEEEEecccCCCCC---Cc---hhhhHHhhHHH----HHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 169 -LFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 169 -al~dADvVIitag~prk~g---~~---R~dll~~N~~I----~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
.+...|+||..+|...... .+ ....+..|..- .+...+.+.+. ...+.||+++-.
T Consensus 72 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~~iv~~sS~ 137 (244)
T 3d3w_A 72 GSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIAR-GVPGAIVNVSSQ 137 (244)
T ss_dssp TTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCG
T ss_pred HHcCCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCcEEEEeCch
Confidence 2235899999888643211 11 12345555443 44444555443 324677777753
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.037 Score=53.16 Aligned_cols=74 Identities=9% Similarity=0.070 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~-~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
+..+|+|||+ |.+|...+..|.. .+. . .|.+ + +++.++++..+.++... ...++....+..+++++|
T Consensus 128 ~~~~v~iIGa-G~~a~~~a~al~~~~~~-~---~V~V--~--~r~~~~a~~la~~~~~~---~g~~~~~~~~~~eav~~a 195 (350)
T 1x7d_A 128 NARKMALIGN-GAQSEFQALAFHKHLGI-E---EIVA--Y--DTDPLATAKLIANLKEY---SGLTIRRASSVAEAVKGV 195 (350)
T ss_dssp TCCEEEEECC-STTHHHHHHHHHHHSCC-C---EEEE--E--CSSHHHHHHHHHHHTTC---TTCEEEECSSHHHHHTTC
T ss_pred cCCeEEEECC-cHHHHHHHHHHHHhCCC-c---EEEE--E--cCCHHHHHHHHHHHHhc---cCceEEEeCCHHHHHhcC
Confidence 4579999995 9999998887754 332 1 2444 3 56667777665555321 011344555566889999
Q ss_pred cEEEEec
Q 019713 174 EWALLIG 180 (337)
Q Consensus 174 DvVIita 180 (337)
|+||++-
T Consensus 196 DiVi~aT 202 (350)
T 1x7d_A 196 DIITTVT 202 (350)
T ss_dssp SEEEECC
T ss_pred CEEEEec
Confidence 9998864
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.26 Score=46.15 Aligned_cols=45 Identities=22% Similarity=0.216 Sum_probs=31.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc-chhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-RSLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d-~~~~~l~g~a~DL~ 150 (337)
++|.|+||+|.||.+++..|+..|. .|.+. + ++.+.++..+.++.
T Consensus 47 k~~lVTGas~GIG~aia~~La~~G~-----~Vv~~----~~r~~~~~~~~~~~l~ 92 (328)
T 2qhx_A 47 PVALVTGAAKRLGRSIAEGLHAEGY-----AVCLH----YHRSAAEANALSATLN 92 (328)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE----ESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----cCCCHHHHHHHHHHHH
Confidence 5799999999999999999998875 24442 3 44455554444443
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.12 Score=46.73 Aligned_cols=118 Identities=16% Similarity=0.109 Sum_probs=66.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc-----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----- 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e----- 168 (337)
++|.|+||+|.||.+++..|+..|. .|.+... .+++.+.++..+.++.+.. .++.. ..| +.+
T Consensus 12 k~vlVTGas~GIG~aia~~la~~G~-----~V~~~~r-~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~ 81 (262)
T 3ksu_A 12 KVIVIAGGIKNLGALTAKTFALESV-----NLVLHYH-QAKDSDTANKLKDELEDQG----AKVALYQSDLSNEEEVAKL 81 (262)
T ss_dssp CEEEEETCSSHHHHHHHHHHTTSSC-----EEEEEES-CGGGHHHHHHHHHHHHTTT----CEEEEEECCCCSHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-----EEEEEec-CccCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHHH
Confidence 5799999999999999999998775 2443211 2345556665555555321 12221 111 111
Q ss_pred ------ccCCCcEEEEecccCCCCC---Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 169 ------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 169 ------al~dADvVIitag~prk~g---~~R---~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
.+...|++|..+|...... .+. ...+..|..-...+.+.+..+-.+.+.||+++-.
T Consensus 82 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~ 149 (262)
T 3ksu_A 82 FDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATS 149 (262)
T ss_dssp HHHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCC
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEech
Confidence 1236899999988643221 111 2345566555555555554432245677777653
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.003 Score=55.82 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=40.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+.+||+|||+ |.||..++..|...+. .|.+ + +++.+ .+. +... .+... +..++++++|
T Consensus 18 ~~~~I~iIG~-G~mG~~la~~L~~~G~-----~V~~--~--~r~~~-~~~----~~~~------g~~~~-~~~~~~~~aD 75 (201)
T 2yjz_A 18 KQGVVCIFGT-GDFGKSLGLKMLQCGY-----SVVF--G--SRNPQ-VSS----LLPR------GAEVL-CYSEAASRSD 75 (201)
Confidence 3468999995 9999999999887653 2433 2 33333 221 1110 12222 4557788999
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+||++.
T Consensus 76 vVilav 81 (201)
T 2yjz_A 76 VIVLAV 81 (201)
Confidence 999875
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.069 Score=47.55 Aligned_cols=111 Identities=13% Similarity=0.049 Sum_probs=61.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc--chhhHHHhHHHhHhhhccCCcccEEEecC-------cc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE--RSLQALEGVAMELEDSLFPLLREVKIGIN-------PY 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d--~~~~~l~g~a~DL~d~~~~~~~~v~i~t~-------~~ 167 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ .+ + ++.+.++....++ . . .++.-..+ -.
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~--~~-~~~r~~~~~~~~~~~~-~---~--~~~~~~~~v~~~~~~~~ 67 (244)
T 1zmo_A 2 VIALVTHARHFAGPAAVEALTQDGY-----TVVC--HD-ASFADAAERQRFESEN-P---G--TIALAEQKPERLVDATL 67 (244)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTC-----EEEE--CC-GGGGSHHHHHHHHHHS-T---T--EEECCCCCGGGHHHHHG
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEE--ec-CCcCCHHHHHHHHHHh-C---C--CcccCHHHHHHHHHHHH
Confidence 4789999999999999999998875 2443 21 3 4555555443333 1 0 01110000 11
Q ss_pred cccCCCcEEEEecccCCC----C--CCc---hhhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ELFEDAEWALLIGAKPRG----P--GME---RAGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 eal~dADvVIitag~prk----~--g~~---R~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|.... + ..+ ....+..|. .+.+...+.+.+. ..+.||+++-
T Consensus 68 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~--~~g~iv~isS 134 (244)
T 1zmo_A 68 QHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAA--GGASVIFITS 134 (244)
T ss_dssp GGSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred HHcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECC
Confidence 233478999999886432 2 111 122355554 3445555656553 4567777764
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0066 Score=55.48 Aligned_cols=105 Identities=17% Similarity=0.075 Sum_probs=59.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc--CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--cC---cccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAG--EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--IN---PYEL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~--~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t~---~~ea 169 (337)
+||.|+||+|++|++++..|+.. +. .|.+. + ++....+ +.... .+... ++ ..++
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~~~g~-----~V~~~--~--r~~~~~~-----~~~~~-----~~~~~D~~d~~~~~~~ 63 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLRKLYGTE-----NVIAS--D--IRKLNTD-----VVNSG-----PFEVVNALDFNQIEHL 63 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHHHCGG-----GEEEE--E--SCCCSCH-----HHHSS-----CEEECCTTCHHHHHHH
T ss_pred ceEEEECCccHHHHHHHHHHHHhCCCC-----EEEEE--c--CCCcccc-----ccCCC-----ceEEecCCCHHHHHHH
Confidence 68999999999999999999876 43 24332 2 2211111 11100 11110 01 1234
Q ss_pred cC--CCcEEEEecccCCCCC-CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 170 FE--DAEWALLIGAKPRGPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 170 l~--dADvVIitag~prk~g-~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++ ++|+||.+++...... .+..+....|+.-...+.+.+.+. ... .+|.+|
T Consensus 64 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~-~~v~~S 117 (312)
T 2yy7_A 64 VEVHKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAK-KIK-KIFWPS 117 (312)
T ss_dssp HHHTTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTT-SCS-EEECCE
T ss_pred HhhcCCCEEEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEec
Confidence 55 8999999887532111 123345778888888888887764 222 556555
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.012 Score=56.82 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=44.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCc-ccEEEecCccccc-C
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELF-E 171 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~t~~~eal-~ 171 (337)
.-|.||+||||+|.+|..+...|..... +.|..+....+ .|... .+.. +.. .++.+..-+.+++ .
T Consensus 11 ~~~~~V~IvGAtG~vG~ellrlL~~hP~------~el~~l~S~~~----aG~~~--~~~~-p~~~~~l~~~~~~~~~~~~ 77 (351)
T 1vkn_A 11 HHMIRAGIIGATGYTGLELVRLLKNHPE------AKITYLSSRTY----AGKKL--EEIF-PSTLENSILSEFDPEKVSK 77 (351)
T ss_dssp -CCEEEEEESTTSHHHHHHHHHHHHCTT------EEEEEEECSTT----TTSBH--HHHC-GGGCCCCBCBCCCHHHHHH
T ss_pred cceeEEEEECCCCHHHHHHHHHHHcCCC------cEEEEEeCccc----ccCCh--HHhC-hhhccCceEEeCCHHHhhc
Confidence 3578999999999999999999988754 45555443322 12211 1111 111 1222222233444 7
Q ss_pred CCcEEEEecc
Q 019713 172 DAEWALLIGA 181 (337)
Q Consensus 172 dADvVIitag 181 (337)
++|+|+++.+
T Consensus 78 ~~Dvvf~alp 87 (351)
T 1vkn_A 78 NCDVLFTALP 87 (351)
T ss_dssp HCSEEEECCS
T ss_pred CCCEEEECCC
Confidence 8999999753
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0062 Score=54.85 Aligned_cols=113 Identities=11% Similarity=0.010 Sum_probs=59.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHh--HHHhHhhhccCCcccEE-EecCcccccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG--VAMELEDSLFPLLREVK-IGINPYELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g--~a~DL~d~~~~~~~~v~-i~t~~~eal~dA 173 (337)
++|.|+||+|.+|.+++..|+..|. .|.+. + ++.+.+.. ...|+.|.. .+. ....-.+.+...
T Consensus 23 k~vlITGas~gIG~~la~~l~~~G~-----~V~~~--~--r~~~~~~~~~~~~d~~d~~-----~v~~~~~~~~~~~g~i 88 (251)
T 3orf_A 23 KNILVLGGSGALGAEVVKFFKSKSW-----NTISI--D--FRENPNADHSFTIKDSGEE-----EIKSVIEKINSKSIKV 88 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE--E--SSCCTTSSEEEECSCSSHH-----HHHHHHHHHHTTTCCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE--e--CCcccccccceEEEeCCHH-----HHHHHHHHHHHHcCCC
Confidence 5799999999999999999998875 24432 2 22222111 111111100 000 000112234567
Q ss_pred cEEEEecccCCCC----CCc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 174 EWALLIGAKPRGP----GME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 174 DvVIitag~prk~----g~~---R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|++|..+|..... ..+ -...+..|+.-...+.+.+.+...+++.||+++-
T Consensus 89 D~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 145 (251)
T 3orf_A 89 DTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGA 145 (251)
T ss_dssp EEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred CEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEec
Confidence 9999988853211 111 1234556665555555555544333567777774
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.2 Score=45.56 Aligned_cols=112 Identities=14% Similarity=0.125 Sum_probs=63.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--cc------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY------ 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~------ 167 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ . +++.+.++..+.++... . ++... .| +.
T Consensus 30 k~vlVTGas~gIG~aia~~L~~~G~-----~V~~--~--~r~~~~~~~~~~~l~~~--~---~~~~~~~Dv~d~~~v~~~ 95 (276)
T 2b4q_A 30 RIALVTGGSRGIGQMIAQGLLEAGA-----RVFI--C--ARDAEACADTATRLSAY--G---DCQAIPADLSSEAGARRL 95 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHHHHTTS--S---CEEECCCCTTSHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHHhc--C---ceEEEEeeCCCHHHHHHH
Confidence 5799999999999999999998774 2444 2 44555555444444321 1 12211 11 11
Q ss_pred -----cccCCCcEEEEecccCCCC---CCc---hhhhHHhhHH----HHHHHHHHHHhhcCC---CeEEEEeCC
Q 019713 168 -----ELFEDAEWALLIGAKPRGP---GME---RAGLLDINGQ----IFAEQGKALNAVASR---NVKVIVVGN 223 (337)
Q Consensus 168 -----eal~dADvVIitag~prk~---g~~---R~dll~~N~~----I~~~i~~~I~~~a~p---~aivIvvtN 223 (337)
+.+...|++|..+|..... ..+ -...+..|+. +.+.+.+.+.+. .. .+.||+++-
T Consensus 96 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~~~~~g~iV~isS 168 (276)
T 2b4q_A 96 AQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRS-ASAENPARVINIGS 168 (276)
T ss_dssp HHHHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CCSSSCEEEEEECC
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-cCCCCCCEEEEECC
Confidence 1234789999998854321 111 1234455533 345566666554 22 167777764
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.23 Score=45.74 Aligned_cols=115 Identities=10% Similarity=0.101 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e---- 168 (337)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.++++..+.++.... ....++.. ..| +.+
T Consensus 26 ~k~vlVTGas~gIG~aia~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~~Dv~d~~~v~~ 95 (297)
T 1xhl_A 26 GKSVIITGSSNGIGRSAAVIFAKEGA-----QVTI----TGRNEDRLEETKQQILKAG-VPAEKINAVVADVTEASGQDD 95 (297)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-CCGGGEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-CCCceEEEEecCCCCHHHHHH
Confidence 35799999999999999999998875 2444 2445555555444444321 10002221 111 111
Q ss_pred -------ccCCCcEEEEecccCCCCC-----Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -------LFEDAEWALLIGAKPRGPG-----MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -------al~dADvVIitag~prk~g-----~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|...... .+. ...+..|+ .+.+...+.+.+. . +.||+++-
T Consensus 96 ~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~-g~IV~isS 166 (297)
T 1xhl_A 96 IINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKT--K-GEIVNVSS 166 (297)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--T-CEEEEECC
T ss_pred HHHHHHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc--C-CEEEEEcC
Confidence 1237899999988543211 111 12344453 3445555555542 2 56777764
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.03 Score=51.18 Aligned_cols=112 Identities=16% Similarity=0.144 Sum_probs=62.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--c-------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------- 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~------- 166 (337)
++|.|+||+|.||.+++..|+..|. .|.+ .+++.++++..+.++... .++.. ..| +
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~-----~V~~----~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~ 87 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGW-----SLVL----TGRREERLQALAGELSAK-----TRVLPLTLDVRDRAAMSAA 87 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHTTT-----SCEEEEECCTTCHHHHHHH
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhhcC-----CcEEEEEcCCCCHHHHHHH
Confidence 5799999999999999999999875 2444 244555555444444321 11111 111 1
Q ss_pred ----ccccCCCcEEEEecccCC--CCC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 ----YELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 ----~eal~dADvVIitag~pr--k~g--~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+...|++|..+|... .+- .+. ...+..|+. +.+.+.+.+.+. ..++.||+++-
T Consensus 88 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~~IV~isS 158 (272)
T 2nwq_A 88 VDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAH-GAGASIVNLGS 158 (272)
T ss_dssp HHTCCGGGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CTTCEEEEECC
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCC
Confidence 122335699999988643 221 111 123444533 355566666654 33326677764
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.25 Score=45.44 Aligned_cols=115 Identities=14% Similarity=0.103 Sum_probs=64.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc----------chhhHHHhHHHhHhhhccCCcccEEE-ecC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE----------RSLQALEGVAMELEDSLFPLLREVKI-GIN 165 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d----------~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~ 165 (337)
+++.|+||+|.||.+++..|+..|. .|.+ +|.+ .+.+.++....++.... .++.. ..|
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~-----~V~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D 97 (299)
T 3t7c_A 29 KVAFITGAARGQGRSHAITLAREGA-----DIIA--IDVCKQLDGVKLPMSTPDDLAETVRQVEALG----RRIIASQVD 97 (299)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEE--EECCSCCTTCCSCCCCHHHHHHHHHHHHHTT----CCEEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEE--EecccccccccccccCHHHHHHHHHHHHhcC----CceEEEECC
Confidence 5789999999999999999999875 2443 2222 12445554444444321 12221 111
Q ss_pred --ccc-----------ccCCCcEEEEecccCCCCC----Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEe
Q 019713 166 --PYE-----------LFEDAEWALLIGAKPRGPG----MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVV 221 (337)
Q Consensus 166 --~~e-----------al~dADvVIitag~prk~g----~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvv 221 (337)
+.+ .+...|++|..+|...... .+. ...+..|+ .+.+...+.+.+. ...+.||++
T Consensus 98 v~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~~g~Iv~i 176 (299)
T 3t7c_A 98 VRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAG-KRGGSIVFT 176 (299)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TSCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCcEEEEE
Confidence 111 2347899999888543211 122 22355553 3455555666553 345777777
Q ss_pred CC
Q 019713 222 GN 223 (337)
Q Consensus 222 tN 223 (337)
+-
T Consensus 177 sS 178 (299)
T 3t7c_A 177 SS 178 (299)
T ss_dssp CC
T ss_pred CC
Confidence 74
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0059 Score=56.15 Aligned_cols=64 Identities=16% Similarity=0.072 Sum_probs=34.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCce-EEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPI-ALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v-~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
++||+|||+ |.||..++..|... . .| .+ .+++.++++..+..+ + . ..++..+.++++|
T Consensus 2 ~m~I~iIG~-G~mG~~la~~l~~~-~-----~v~~v----~~~~~~~~~~~~~~~-----g----~-~~~~~~~~~~~~D 60 (276)
T 2i76_A 2 SLVLNFVGT-GTLTRFFLECLKDR-Y-----EIGYI----LSRSIDRARNLAEVY-----G----G-KAATLEKHPELNG 60 (276)
T ss_dssp --CCEEESC-CHHHHHHHHTTC----------CCCE----ECSSHHHHHHHHHHT-----C----C-CCCSSCCCCC---
T ss_pred CceEEEEeC-CHHHHHHHHHHHHc-C-----cEEEE----EeCCHHHHHHHHHHc-----C----C-ccCCHHHHHhcCC
Confidence 368999995 99999999887654 2 13 23 245555554332111 1 1 2234445688999
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+||++.
T Consensus 61 vVilav 66 (276)
T 2i76_A 61 VVFVIV 66 (276)
T ss_dssp CEEECS
T ss_pred EEEEeC
Confidence 999875
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.15 Score=45.64 Aligned_cols=26 Identities=31% Similarity=0.199 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCc--hHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGM--IANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~--VG~~la~~L~~~~l 121 (337)
.++|.|+||+|. ||.+++..|+..|.
T Consensus 7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~ 34 (266)
T 3oig_A 7 GRNIVVMGVANKRSIAWGIARSLHEAGA 34 (266)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCC
Confidence 358999999988 99999999999875
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.024 Score=50.93 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.||.+++..|+..|.
T Consensus 7 ~k~~lVTGas~gIG~aia~~l~~~G~ 32 (257)
T 3tpc_A 7 SRVFIVTGASSGLGAAVTRMLAQEGA 32 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 35789999999999999999999875
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.013 Score=53.85 Aligned_cols=110 Identities=16% Similarity=0.153 Sum_probs=58.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec--CcccccC--C
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFE--D 172 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t--~~~eal~--d 172 (337)
|||.|+||+|.+|++++..|+..|. .|.+ ++.. .....+ .+.... .. ....++. ...++++ +
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~-----~V~~--~~r~-~~~~~~----~~~~~~-~~-~~~Dl~~~~~~~~~~~~~~ 66 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGL-----EVAV--LDNL-ATGKRE----NVPKGV-PF-FRVDLRDKEGVERAFREFR 66 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-----EEEE--ECCC-SSCCGG----GSCTTC-CE-ECCCTTCHHHHHHHHHHHC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC-----EEEE--EECC-CcCchh----hcccCe-EE-EECCCCCHHHHHHHHHhcC
Confidence 5899999999999999999988764 2433 2221 111111 010000 00 0000000 0113455 7
Q ss_pred CcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 173 AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 173 ADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.|+||.+++..... ..+....+..|+.-...+.+.+.+. ... .+|++|
T Consensus 67 ~d~vi~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~-~iv~~S 116 (311)
T 2p5y_A 67 PTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQY-GVE-KLVFAS 116 (311)
T ss_dssp CSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCS-EEEEEE
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCC-EEEEeC
Confidence 99999988753210 0122345667777777788877764 333 566655
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.026 Score=53.89 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=39.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
+||+||| .|.||..+|..+...|. .|.. + |++.+... . +....+..+.+++||+|
T Consensus 165 ~~vgIIG-~G~iG~~vA~~l~~~G~-----~V~~--~--dr~~~~~~-----------g----~~~~~~l~ell~~aDvV 219 (333)
T 3ba1_A 165 KRVGIIG-LGRIGLAVAERAEAFDC-----PISY--F--SRSKKPNT-----------N----YTYYGSVVELASNSDIL 219 (333)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHTTTC-----CEEE--E--CSSCCTTC-----------C----SEEESCHHHHHHTCSEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE--E--CCCchhcc-----------C----ceecCCHHHHHhcCCEE
Confidence 5899999 59999999999986554 2443 3 33322211 1 12234455778999999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
+++.
T Consensus 220 il~v 223 (333)
T 3ba1_A 220 VVAC 223 (333)
T ss_dssp EECS
T ss_pred EEec
Confidence 9975
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.14 Score=45.81 Aligned_cols=112 Identities=9% Similarity=0.131 Sum_probs=60.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecCc--------
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GINP-------- 166 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~~-------- 166 (337)
|++|.|+||+|.+|.+++..|+..|. .|.+ . +++.++++... ++.... . ++.. ..++
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~~~~-~l~~~~-~---~~~~~d~~~v~~~~~~~ 66 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGH-----TVAC--H--DESFKQKDELE-AFAETY-P---QLKPMSEQEPAELIEAV 66 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTC-----EEEE--C--CGGGGSHHHHH-HHHHHC-T---TSEECCCCSHHHHHHHH
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHH-HHHhcC-C---cEEEECHHHHHHHHHHH
Confidence 35799999999999999999998875 2443 3 34444444322 233211 0 1111 0111
Q ss_pred ccccCCCcEEEEecccC-C-CCC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 YELFEDAEWALLIGAKP-R-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 ~eal~dADvVIitag~p-r-k~g--~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+...|++|..+|.. . .+- .+. ...+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 67 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS 132 (254)
T 1zmt_A 67 TSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKR--KSGHIIFITS 132 (254)
T ss_dssp HHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred HHHhCCCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECC
Confidence 12234789999998864 2 221 111 223444533 445555656553 3456777764
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.1 Score=47.28 Aligned_cols=115 Identities=10% Similarity=0.034 Sum_probs=63.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc-----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----- 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e----- 168 (337)
+++.|+||+|.||.+++..|+..|. .|.+. +. .+.+.++..+.++.+.. .++.. ..| +.+
T Consensus 19 k~~lVTGas~gIG~aia~~l~~~G~-----~V~~~--~~-~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~ 86 (270)
T 3is3_A 19 KVALVTGSGRGIGAAVAVHLGRLGA-----KVVVN--YA-NSTKDAEKVVSEIKALG----SDAIAIKADIRQVPEIVKL 86 (270)
T ss_dssp CEEEESCTTSHHHHHHHHHHHHTTC-----EEEEE--ES-SCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-----EEEEE--cC-CCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHHH
Confidence 5789999999999999999999875 24442 11 23344444444444321 12221 111 111
Q ss_pred ------ccCCCcEEEEecccCCCCC---Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 ------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 ------al~dADvVIitag~prk~g---~~R---~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|...... .+. ...+..|..-...+.+.+..+-.+++.||+++-
T Consensus 87 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 87 FDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp HHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 1236799999888643211 122 234566655444445544444334567777765
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.023 Score=53.93 Aligned_cols=103 Identities=23% Similarity=0.136 Sum_probs=56.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC-------cc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN-------PY 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~-------~~ 167 (337)
.+||.|+||+|++|++++..|+..+. .|... +++.+.... .++.+. ..+.+ ..| ..
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~-----~V~~~----~R~~~~~~~--~~l~~~-----~~v~~v~~D~l~d~~~l~ 68 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGH-----HVRAQ----VHSLKGLIA--EELQAI-----PNVTLFQGPLLNNVPLMD 68 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTC-----CEEEE----ESCSCSHHH--HHHHTS-----TTEEEEESCCTTCHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-----EEEEE----ECCCChhhH--HHHhhc-----CCcEEEECCccCCHHHHH
Confidence 46899999999999999999988663 24432 222222211 112211 01211 112 13
Q ss_pred cccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 168 eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
++++++|+||..++... . ..|... +.+.+.+.+. ..-..+|.+|-..
T Consensus 69 ~~~~~~d~Vi~~a~~~~---~------~~~~~~-~~l~~aa~~~-g~v~~~V~~SS~~ 115 (352)
T 1xgk_A 69 TLFEGAHLAFINTTSQA---G------DEIAIG-KDLADAAKRA-GTIQHYIYSSMPD 115 (352)
T ss_dssp HHHTTCSEEEECCCSTT---S------CHHHHH-HHHHHHHHHH-SCCSEEEEEECCC
T ss_pred HHHhcCCEEEEcCCCCC---c------HHHHHH-HHHHHHHHHc-CCccEEEEeCCcc
Confidence 55889999997654321 1 124333 6667766664 3112666776543
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.075 Score=48.00 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 34 ~k~vlITGasggIG~~la~~L~~~G~ 59 (279)
T 3ctm_A 34 GKVASVTGSSGGIGWAVAEAYAQAGA 59 (279)
T ss_dssp TCEEEETTTTSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.33 Score=44.08 Aligned_cols=111 Identities=15% Similarity=0.138 Sum_probs=61.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc-----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----- 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e----- 168 (337)
++|.|+||+|.||.+++..|+..|. .|.+ .+ ++ +.++..+.++.+.. .++.. ..| +.+
T Consensus 32 k~~lVTGas~GIG~aia~~la~~G~-----~V~~--~~--r~-~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~ 97 (273)
T 3uf0_A 32 RTAVVTGAGSGIGRAIAHGYARAGA-----HVLA--WG--RT-DGVKEVADEIADGG----GSAEAVVADLADLEGAANV 97 (273)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EE--SS-THHHHHHHHHHTTT----CEEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE--Ec--CH-HHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHHH
Confidence 5799999999999999999998875 2443 22 22 23333333443321 12221 111 111
Q ss_pred -----ccCCCcEEEEecccCCCCCC---ch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -----LFEDAEWALLIGAKPRGPGM---ER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -----al~dADvVIitag~prk~g~---~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|....... +. ...+..|+ .+.+...+.+.+. ..+.||+++-
T Consensus 98 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~IV~isS 165 (273)
T 3uf0_A 98 AEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAH--GSGRIVTIAS 165 (273)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEEcc
Confidence 12478999999886432111 11 12344453 3455555666654 3467777764
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.25 Score=44.70 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.||.+++..|+..|.
T Consensus 10 ~k~~lVTGas~gIG~a~a~~l~~~G~ 35 (281)
T 3s55_A 10 GKTALITGGARGMGRSHAVALAEAGA 35 (281)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999999875
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.22 Score=44.24 Aligned_cols=107 Identities=10% Similarity=0.065 Sum_probs=60.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY------ 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~------ 167 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ . +++.++++... ++. ++.. ..| +.
T Consensus 7 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~~~~-~~~--------~~~~~~~D~~~~~~~~~~ 68 (246)
T 2ag5_A 7 KVIILTAAAQGIGQAAALAFAREGA-----KVIA--T--DINESKLQELE-KYP--------GIQTRVLDVTKKKQIDQF 68 (246)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHGGGG-GST--------TEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE--E--ECCHHHHHHHH-hcc--------CceEEEeeCCCHHHHHHH
Confidence 5799999999999999999998874 2444 2 34444444322 221 1111 111 11
Q ss_pred -cccCCCcEEEEecccCCCCC---Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 -ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 -eal~dADvVIitag~prk~g---~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|...... .+. ...+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 69 ~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~--~~g~iv~isS 133 (246)
T 2ag5_A 69 ANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ--KSGNIINMSS 133 (246)
T ss_dssp HHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 22567899999988643211 111 123444433 445555555553 3467777764
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.034 Score=51.18 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+||.|+||+|.+|++++..|+..+.
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~ 36 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGH 36 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTC
T ss_pred CeEEEECCCchHHHHHHHHHHHCCC
Confidence 4899999999999999999998763
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.19 Score=45.32 Aligned_cols=114 Identities=16% Similarity=0.093 Sum_probs=62.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e---- 168 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+. +. .+.+.++....++.... .++.+. .| +.+
T Consensus 29 ~k~vlITGas~gIG~~la~~l~~~G~-----~V~~~--~r-~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~ 96 (271)
T 4iin_A 29 GKNVLITGASKGIGAEIAKTLASMGL-----KVWIN--YR-SNAEVADALKNELEEKG----YKAAVIKFDAASESDFIE 96 (271)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE--ES-SCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE--eC-CCHHHHHHHHHHHHhcC----CceEEEECCCCCHHHHHH
Confidence 35799999999999999999998875 24432 22 13334443333343221 122221 11 111
Q ss_pred -------ccCCCcEEEEecccCCCCC---Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -------al~dADvVIitag~prk~g---~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|...... .+. ...+..|.. +.+.+.+.+.+. ..+.||+++-
T Consensus 97 ~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~g~iv~isS 166 (271)
T 4iin_A 97 AIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKS--RFGSVVNVAS 166 (271)
T ss_dssp HHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc--CCCEEEEEec
Confidence 1237899999988643221 111 223444533 455566666654 3457777764
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.19 Score=45.36 Aligned_cols=116 Identities=14% Similarity=0.169 Sum_probs=61.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc--
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE-- 168 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e-- 168 (337)
.+.++|.|+||+|.+|.+++..|+..|. .|.+ .+. .+.+.++....++.+.. .++... .| +.+
T Consensus 23 ~~~k~vlITGas~gIG~~~a~~l~~~G~-----~v~~--~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~v 90 (269)
T 3gk3_A 23 QAKRVAFVTGGMGGLGAAISRRLHDAGM-----AVAV--SHS-ERNDHVSTWLMHERDAG----RDFKAYAVDVADFESC 90 (269)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHTTTC-----EEEE--EEC-SCHHHHHHHHHHHHTTT----CCCEEEECCTTCHHHH
T ss_pred hcCCEEEEECCCchHHHHHHHHHHHCCC-----EEEE--EcC-CchHHHHHHHHHHHhcC----CceEEEEecCCCHHHH
Confidence 3445788999999999999999998875 2443 221 23334433333333211 122211 11 111
Q ss_pred ---------ccCCCcEEEEecccCCCC---CCchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 ---------LFEDAEWALLIGAKPRGP---GMERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 ---------al~dADvVIitag~prk~---g~~R~---dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|..... ..+.. ..+..|. .+.+...+.+.+. ..+.||+++-
T Consensus 91 ~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~g~iv~isS 162 (269)
T 3gk3_A 91 ERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVER--RFGRIVNIGS 162 (269)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEeCC
Confidence 123789999998864321 11221 2344453 3445555555553 4567777774
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.23 Score=44.21 Aligned_cols=109 Identities=12% Similarity=0.027 Sum_probs=60.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchh-hHHHhHHHhHhhhccCCcccEEE-ecC--cccc---
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVKI-GIN--PYEL--- 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~-~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~ea--- 169 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ . +++. +.++. ++.+.. .++.. ..| +.++
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~~~---~~~~~~----~~~~~~~~Dv~~~~~v~~ 71 (249)
T 2ew8_A 8 KLAVITGGANGIGRAIAERFAVEGA-----DIAI--A--DLVPAPEAEA---AIRNLG----RRVLTVKCDVSQPGDVEA 71 (249)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--E--ESSCCHHHHH---HHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE--E--cCCchhHHHH---HHHhcC----CcEEEEEeecCCHHHHHH
Confidence 5799999999999999999998875 2444 2 3333 33332 222211 11221 111 1221
Q ss_pred --------cCCCcEEEEecccCCCCC---Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 --------FEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 --------l~dADvVIitag~prk~g---~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+...|++|..+|...... .+. ...+..|.. +.+.+.+.+.+. ..+.||+++-
T Consensus 72 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS 141 (249)
T 2ew8_A 72 FGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRN--GWGRIINLTS 141 (249)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCeEEEEEcc
Confidence 357899999988643211 111 223555543 355555656664 3467777764
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.024 Score=51.52 Aligned_cols=26 Identities=12% Similarity=0.081 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..|||+||| +|.||.+++..|...|.
T Consensus 5 ~~mkI~IIG-~G~~G~sLA~~L~~~G~ 30 (232)
T 3dfu_A 5 PRLRVGIFD-DGSSTVNMAEKLDSVGH 30 (232)
T ss_dssp CCCEEEEEC-CSCCCSCHHHHHHHTTC
T ss_pred CCcEEEEEe-eCHHHHHHHHHHHHCCC
Confidence 457999999 59999999999998774
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.042 Score=55.36 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=31.7
Q ss_pred CCccceeeeeeeccchhhh-----------hhccCCCEEEEEcCCCchHHHHHHHHHHc
Q 019713 72 NDCYGVFCLTYDLKAEEET-----------KSWKKMVNIAVSGAAGMIANHLLFKLAAG 119 (337)
Q Consensus 72 ~~~~gv~~~~~~~~~~~~~-----------~~~~~~~KI~IIGAaG~VG~~la~~L~~~ 119 (337)
++-||+-.+...=+.|... ...+..+||+||| .|.+|.++|..|...
T Consensus 19 ~~~~~~~~~~~~g~~E~v~~~~~w~~~~~~~~L~GiKkIgIIG-lGsMG~AmA~nLr~s 76 (525)
T 3fr7_A 19 TSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIG-WGSQGPAQAQNLRDS 76 (525)
T ss_dssp CSSSCEEEEEETTEEEEEEECCGGGGGGHHHHTTTCSEEEEEC-CTTHHHHHHHHHHHH
T ss_pred cccceeeEeecCCcceEEEeccccccccChHHhcCCCEEEEEe-EhHHHHHHHHHHHhc
Confidence 5667776665543333321 1222337999999 599999999999887
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.091 Score=47.33 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=63.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~--~~e---- 168 (337)
.++|.|+||+|.||.+++..|+..|. .|.+. .+.+.+.++....++.... .++. +..| +.+
T Consensus 8 ~k~vlVTGas~GIG~aia~~la~~G~-----~V~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~ 75 (259)
T 3edm_A 8 NRTIVVAGAGRDIGRACAIRFAQEGA-----NVVLT---YNGAAEGAATAVAEIEKLG----RSALAIKADLTNAAEVEA 75 (259)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE---ECSSCHHHHHHHHHHHTTT----SCCEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE---cCCCHHHHHHHHHHHHhcC----CceEEEEcCCCCHHHHHH
Confidence 35899999999999999999999875 24432 1233344443434444321 1111 1111 111
Q ss_pred -------ccCCCcEEEEecccC--CCCC--Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -------LFEDAEWALLIGAKP--RGPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -------al~dADvVIitag~p--rk~g--~~R---~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|.. .++- .+. ...+..|+.-...+.+.+...-.+.+.||+++-
T Consensus 76 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS 144 (259)
T 3edm_A 76 AISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSS 144 (259)
T ss_dssp HHHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred HHHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 123689999888743 2221 122 234566655555555555544223457777764
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.0072 Score=57.86 Aligned_cols=68 Identities=16% Similarity=0.258 Sum_probs=40.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecC----ccccc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN----PYELF 170 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~----~~eal 170 (337)
+.|||.|+|| |.||+.++..|+.. ..|.+ . |++.++++.. .+ ....+.+-.. ..+.+
T Consensus 15 ~~mkilvlGa-G~vG~~~~~~L~~~------~~v~~--~--~~~~~~~~~~----~~----~~~~~~~d~~d~~~l~~~~ 75 (365)
T 3abi_A 15 RHMKVLILGA-GNIGRAIAWDLKDE------FDVYI--G--DVNNENLEKV----KE----FATPLKVDASNFDKLVEVM 75 (365)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHTTT------SEEEE--E--ESCHHHHHHH----TT----TSEEEECCTTCHHHHHHHH
T ss_pred CccEEEEECC-CHHHHHHHHHHhcC------CCeEE--E--EcCHHHHHHH----hc----cCCcEEEecCCHHHHHHHH
Confidence 4579999996 99999999988542 13544 2 3444555432 11 1112222112 23567
Q ss_pred CCCcEEEEecc
Q 019713 171 EDAEWALLIGA 181 (337)
Q Consensus 171 ~dADvVIitag 181 (337)
+++|+||.+.+
T Consensus 76 ~~~DvVi~~~p 86 (365)
T 3abi_A 76 KEFELVIGALP 86 (365)
T ss_dssp TTCSEEEECCC
T ss_pred hCCCEEEEecC
Confidence 89999998863
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.28 Score=44.67 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=33.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d 151 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++..+.++..
T Consensus 19 k~vlVTGasggIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~ 64 (303)
T 1yxm_A 19 QVAIVTGGATGIGKAIVKELLELGS-----NVVI----ASRKLERLKSAADELQA 64 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHh
Confidence 6899999999999999999998774 2444 24455555555555543
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.1 Score=46.21 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=62.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cccc--
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL-- 169 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~ea-- 169 (337)
+.++|.|+||+|.+|.+++..|+..|. .+.+. . .++.+.++....++.... .++.. ..| +.+.
T Consensus 6 ~~k~vlITGas~gIG~~~a~~l~~~G~-----~v~~~-~--~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~ 73 (255)
T 3icc_A 6 KGKVALVTGASRGIGRAIAKRLANDGA-----LVAIH-Y--GNRKEEAEETVYEIQSNG----GSAFSIGANLESLHGVE 73 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE-E--SSCSHHHHHHHHHHHHTT----CEEEEEECCTTSHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-----eEEEE-e--CCchHHHHHHHHHHHhcC----CceEEEecCcCCHHHHH
Confidence 346799999999999999999998875 24332 1 233344444444444321 11211 111 1111
Q ss_pred --c-------------CCCcEEEEecccCCCCC---Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 170 --F-------------EDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 170 --l-------------~dADvVIitag~prk~g---~~R---~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
+ ...|++|..+|...... .+. ...+..|..-...+.+.+...-.+++.||+++-.
T Consensus 74 ~~~~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~ 149 (255)
T 3icc_A 74 ALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSA 149 (255)
T ss_dssp HHHHHHHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCG
T ss_pred HHHHHHHHHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCCh
Confidence 1 12899999888642211 111 2235556444444555444332235678887753
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.011 Score=54.14 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=57.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHc--CCCCCCCceEEEeccccchhhHHHh---HHHhHhhhccCCcccEEEecCcccccC-
Q 019713 98 NIAVSGAAGMIANHLLFKLAAG--EVLGPDQPIALKLLGSERSLQALEG---VAMELEDSLFPLLREVKIGINPYELFE- 171 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~--~l~~e~~~v~L~L~d~d~~~~~l~g---~a~DL~d~~~~~~~~v~i~t~~~eal~- 171 (337)
||.|+||+|+||++++..|+.. +. .|... +++.....+ ...|+.|.. ...++++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~-----~V~~~----~r~~~~~~~~~~~~~D~~d~~-----------~~~~~~~~ 60 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKK-----NVIAS----DIVQRDTGGIKFITLDVSNRD-----------EIDRAVEK 60 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGG-----GEEEE----ESSCCCCTTCCEEECCTTCHH-----------HHHHHHHH
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCC-----EEEEe----cCCCccccCceEEEecCCCHH-----------HHHHHHhh
Confidence 5899999999999999999875 43 24332 111111110 001111100 0123344
Q ss_pred -CCcEEEEecccCCCCC-CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 172 -DAEWALLIGAKPRGPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 172 -dADvVIitag~prk~g-~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+.|+||.+++...... .+..+.+..|+.-...+.+.+.+. ... .+|++|
T Consensus 61 ~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~-~~v~~S 111 (317)
T 3ajr_A 61 YSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQH-RVE-KVVIPS 111 (317)
T ss_dssp TTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-EEEEEE
T ss_pred cCCcEEEECCcccCCccccChHHHhhhhhHHHHHHHHHHHHc-CCC-EEEEec
Confidence 8999999887532111 123345677888788888888774 332 566654
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.051 Score=48.69 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++|.|+||+|.+|.+++..|+..|.
T Consensus 7 ~k~vlVTGas~gIG~~~a~~l~~~G~ 32 (264)
T 3i4f_A 7 VRHALITAGTKGLGKQVTEKLLAKGY 32 (264)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTC
T ss_pred cCEEEEeCCCchhHHHHHHHHHHCCC
Confidence 46799999999999999999998875
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.014 Score=51.82 Aligned_cols=114 Identities=10% Similarity=-0.025 Sum_probs=58.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHh----HHHhHhhhccCCcccEEEecCccccc--
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG----VAMELEDSLFPLLREVKIGINPYELF-- 170 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g----~a~DL~d~~~~~~~~v~i~t~~~eal-- 170 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ . +++.+.+++ ...|+.+... . .. ....-.+.+
T Consensus 4 k~vlITGas~gIG~~~a~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~~D~~~~~~-~-~~--~~~~~~~~~~~ 70 (236)
T 1ooe_A 4 GKVIVYGGKGALGSAILEFFKKNGY-----TVLN--I--DLSANDQADSNILVDGNKNWTEQ-E-QS--ILEQTASSLQG 70 (236)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTE-----EEEE--E--ESSCCTTSSEEEECCTTSCHHHH-H-HH--HHHHHHHHHTT
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEE--E--ecCccccccccEEEeCCCCCHHH-H-HH--HHHHHHHHhCC
Confidence 5799999999999999999998874 2443 2 222222211 1111111100 0 00 000001122
Q ss_pred CCCcEEEEecccCCC-C---CCc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 171 EDAEWALLIGAKPRG-P---GME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 171 ~dADvVIitag~prk-~---g~~---R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.|++|..+|.... + ..+ -...+..|..-...+.+.+.++-...+.||+++-
T Consensus 71 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 130 (236)
T 1ooe_A 71 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGA 130 (236)
T ss_dssp CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECc
Confidence 478999999885421 1 111 1234566665555555555443223467777774
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=94.90 E-value=0.18 Score=45.87 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.||.+++..|+..|.
T Consensus 24 k~~lVTGas~gIG~aia~~L~~~G~ 48 (288)
T 2x9g_A 24 PAAVVTGAAKRIGRAIAVKLHQTGY 48 (288)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHHTC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 5799999999999999999998875
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.17 Score=45.62 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=63.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~e---- 168 (337)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.++++..+.++.+.. .++.. ..| +.+
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~ 77 (264)
T 3ucx_A 11 DKVVVISGVGPALGTTLARRCAEQGA-----DLVL----AARTVERLEDVAKQVTDTG----RRALSVGTDITDDAQVAH 77 (264)
T ss_dssp TCEEEEESCCTTHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCcC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHH
Confidence 35799999999999999999999875 2544 2455666666555554322 11221 111 111
Q ss_pred -------ccCCCcEEEEecccC-C-CCC--Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -------LFEDAEWALLIGAKP-R-GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -------al~dADvVIitag~p-r-k~g--~~R~---dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|.. . ++- .+.. ..+..|. .+.+...+.+.+. . +.||+++-
T Consensus 78 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~-g~iv~isS 147 (264)
T 3ucx_A 78 LVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEES--K-GAVVNVNS 147 (264)
T ss_dssp HHHHHHHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH--T-CEEEEECC
T ss_pred HHHHHHHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--C-CEEEEECc
Confidence 233789999988753 2 221 1211 2344443 3445555555553 2 56677764
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.043 Score=49.02 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 5 ~k~vlVTGas~giG~~ia~~l~~~G~ 30 (245)
T 1uls_A 5 DKAVLITGAAHGIGRATLELFAKEGA 30 (245)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 35799999999999999999998775
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.094 Score=46.33 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 7 ~k~vlVTGasggiG~~~a~~l~~~G~ 32 (258)
T 3afn_B 7 GKRVLITGSSQGIGLATARLFARAGA 32 (258)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 35899999999999999999998775
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.12 Score=46.19 Aligned_cols=109 Identities=11% Similarity=0.088 Sum_probs=59.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecC---cccccCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN---PYELFED 172 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~---~~eal~d 172 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ . +++.+.++. +.... .. .++ ..+ -.+.+.+
T Consensus 19 ~k~vlVTGas~gIG~~~a~~l~~~G~-----~V~~--~--~r~~~~~~~----~~~~~-~~-~D~--~~~~~~~~~~~~~ 81 (249)
T 1o5i_A 19 DKGVLVLAASRGIGRAVADVLSQEGA-----EVTI--C--ARNEELLKR----SGHRY-VV-CDL--RKDLDLLFEKVKE 81 (249)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHH----TCSEE-EE-CCT--TTCHHHHHHHSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE--E--cCCHHHHHh----hCCeE-EE-eeH--HHHHHHHHHHhcC
Confidence 46899999999999999999998774 2443 2 333332221 11000 00 011 001 1123347
Q ss_pred CcEEEEecccCCCCC---Cc---hhhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 173 AEWALLIGAKPRGPG---ME---RAGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 173 ADvVIitag~prk~g---~~---R~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.|++|..+|...... .+ -...+..|. .+.+.+.+.+.+. ..+.||+++-
T Consensus 82 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS 140 (249)
T 1o5i_A 82 VDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEK--GWGRIVAITS 140 (249)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEEcc
Confidence 999999988643211 11 112344443 3355566666664 3457777764
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.085 Score=47.14 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=23.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
.++++|.|+||+|.+|.+++..|+..+
T Consensus 19 ~~~k~vlITGasggIG~~la~~L~~~G 45 (267)
T 1sny_A 19 SHMNSILITGCNRGLGLGLVKALLNLP 45 (267)
T ss_dssp -CCSEEEESCCSSHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhcC
Confidence 345689999999999999999999877
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.21 Score=45.23 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=32.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ + +++.++++..+.++.
T Consensus 7 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~ 51 (280)
T 1xkq_A 7 KTVIITGSSNGIGRTTAILFAQEGA-----NVTI--T--GRSSERLEETRQIIL 51 (280)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHH
Confidence 5799999999999999999998875 2444 2 445555554444443
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.034 Score=50.98 Aligned_cols=110 Identities=13% Similarity=0.095 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e---- 168 (337)
.++|.|+||+|.||.+++..|+..|. .|.+ .+++.++++....++. .++... .| +.+
T Consensus 16 gk~vlVTGas~gIG~~~a~~L~~~G~-----~V~~----~~r~~~~~~~~~~~~~-------~~~~~~~~Dl~d~~~v~~ 79 (291)
T 3rd5_A 16 QRTVVITGANSGLGAVTARELARRGA-----TVIM----AVRDTRKGEAAARTMA-------GQVEVRELDLQDLSSVRR 79 (291)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHTTSS-------SEEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhc-------CCeeEEEcCCCCHHHHHH
Confidence 36899999999999999999999875 2544 2455555554333221 122211 11 111
Q ss_pred ---ccCCCcEEEEecccCCCC-CC---chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 ---LFEDAEWALLIGAKPRGP-GM---ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 ---al~dADvVIitag~prk~-g~---~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|....+ .. +-...+..|..-...+.+.+...- . ..||+++-
T Consensus 80 ~~~~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~-~-~riv~isS 139 (291)
T 3rd5_A 80 FADGVSGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRL-T-DRVVTVSS 139 (291)
T ss_dssp HHHTCCCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGE-E-EEEEEECC
T ss_pred HHHhcCCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hheeEeec
Confidence 123679999998864321 11 222356777666666666666552 2 25666664
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.43 Score=43.78 Aligned_cols=117 Identities=15% Similarity=0.238 Sum_probs=64.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY------ 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~------ 167 (337)
++|.|+||+|.||.+++..|+..+.-. ..|.+ .+++.+.++..+.++.... + ..++.. ..| +.
T Consensus 34 k~~lVTGas~GIG~aia~~l~~~G~~~--~~V~~----~~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~Dv~d~~~v~~~ 105 (287)
T 3rku_A 34 KTVLITGASAGIGKATALEYLEASNGD--MKLIL----AARRLEKLEELKKTIDQEF-P-NAKVHVAQLDITQAEKIKPF 105 (287)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHHTTC--SEEEE----EESCHHHHHHHHHHHHHHC-T-TCEEEEEECCTTCGGGHHHH
T ss_pred CEEEEecCCChHHHHHHHHHHHcCCCC--ceEEE----EECCHHHHHHHHHHHHhhC-C-CCeEEEEECCCCCHHHHHHH
Confidence 589999999999999999998766411 01433 2455566665555554321 1 112221 111 11
Q ss_pred -----cccCCCcEEEEecccCC--CC--CCch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 -----ELFEDAEWALLIGAKPR--GP--GMER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 -----eal~dADvVIitag~pr--k~--g~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|... .+ ..+. ...+..|+ .+.+...+.+.+. ..+.||+++-
T Consensus 106 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~IV~isS 175 (287)
T 3rku_A 106 IENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAK--NSGDIVNLGS 175 (287)
T ss_dssp HHTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred HHHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCeEEEECC
Confidence 22346899999988543 21 1121 22345553 3455555656653 3456777764
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=94.78 E-value=0.15 Score=46.46 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=32.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.
T Consensus 28 ~k~vlITGasggIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 73 (286)
T 1xu9_A 28 GKKVIVTGASKGIGREMAYHLAKMGA-----HVVV----TARSKETLQKVVSHCL 73 (286)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHH
Confidence 35899999999999999999998874 2444 2455555554444443
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.44 Score=42.26 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 5 ~k~vlVtGas~gIG~~~a~~l~~~G~ 30 (254)
T 1sby_A 5 NKNVIFVAALGGIGLDTSRELVKRNL 30 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTCC
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.072 Score=50.30 Aligned_cols=72 Identities=14% Similarity=-0.029 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
...+|+|||+ |.+|...+..|....-+. .|.+ .+++.++++..+.++.... ..+. ..+..+++ ++|
T Consensus 124 ~~~~v~iIGa-G~~a~~~~~al~~~~~~~---~V~v----~~r~~~~a~~la~~~~~~~----~~~~-~~~~~e~v-~aD 189 (322)
T 1omo_A 124 NSSVFGFIGC-GTQAYFQLEALRRVFDIG---EVKA----YDVREKAAKKFVSYCEDRG----ISAS-VQPAEEAS-RCD 189 (322)
T ss_dssp TCCEEEEECC-SHHHHHHHHHHHHHSCCC---EEEE----ECSSHHHHHHHHHHHHHTT----CCEE-ECCHHHHT-SSS
T ss_pred CCCEEEEEcC-cHHHHHHHHHHHHhCCcc---EEEE----ECCCHHHHHHHHHHHHhcC----ceEE-ECCHHHHh-CCC
Confidence 4579999995 999999998887632121 2444 3566777776665554311 1344 44556778 999
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+|+++-
T Consensus 190 vVi~aT 195 (322)
T 1omo_A 190 VLVTTT 195 (322)
T ss_dssp EEEECC
T ss_pred EEEEee
Confidence 998864
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.071 Score=47.81 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~ 31 (256)
T 2d1y_A 6 GKGVLVTGGARGIGRAIAQAFAREGA 31 (256)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 35799999999999999999998874
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.26 Score=45.85 Aligned_cols=116 Identities=15% Similarity=0.081 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc----------hhhHHHhHHHhHhhhccCCcccEEE-ec
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER----------SLQALEGVAMELEDSLFPLLREVKI-GI 164 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~----------~~~~l~g~a~DL~d~~~~~~~~v~i-~t 164 (337)
.++|.|+||+|.||.+++..|+..|. .|.+ +|.++ +.+.++..+.++.... .++.. ..
T Consensus 46 gk~~lVTGas~GIG~aia~~la~~G~-----~Vv~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 114 (317)
T 3oec_A 46 GKVAFITGAARGQGRTHAVRLAQDGA-----DIVA--IDLCRQQPNLDYAQGSPEELKETVRLVEEQG----RRIIARQA 114 (317)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE--EECCCCCTTCCSCCCCHHHHHHHHHHHHHTT----CCEEEEEC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----eEEE--EecccccccccccccCHHHHHHHHHHHHhcC----CeEEEEEC
Confidence 35789999999999999999999875 2443 22221 1344443333333221 12221 11
Q ss_pred C--cc-----------cccCCCcEEEEecccCCC-C--CCch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEe
Q 019713 165 N--PY-----------ELFEDAEWALLIGAKPRG-P--GMER---AGLLDING----QIFAEQGKALNAVASRNVKVIVV 221 (337)
Q Consensus 165 ~--~~-----------eal~dADvVIitag~prk-~--g~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvv 221 (337)
| +. +.+...|++|..+|.... + ..+. ...+..|+ .+.+.+.+.+.+. ..++.||++
T Consensus 115 Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~~g~Iv~i 193 (317)
T 3oec_A 115 DVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIER-GQGGSVIFV 193 (317)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-CSCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCCEEEEE
Confidence 1 11 123378999999886432 1 1122 22345553 3455566666654 346777777
Q ss_pred CC
Q 019713 222 GN 223 (337)
Q Consensus 222 tN 223 (337)
+-
T Consensus 194 sS 195 (317)
T 3oec_A 194 SS 195 (317)
T ss_dssp CC
T ss_pred Cc
Confidence 74
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.07 Score=48.51 Aligned_cols=76 Identities=16% Similarity=0.083 Sum_probs=46.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch-----------------hhHHHhHHHhHhhhccCCccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-----------------LQALEGVAMELEDSLFPLLRE 159 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~-----------------~~~l~g~a~DL~d~~~~~~~~ 159 (337)
.||.|||+ |.+|+.++..|+..|+- .|. ++|.|.- ..+++..+..+.+.. |. .+
T Consensus 32 ~~VlVvG~-Gg~G~~va~~La~~Gv~----~i~--lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~-~~ 102 (249)
T 1jw9_B 32 SRVLIVGL-GGLGCAASQYLASAGVG----NLT--LLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN-PH-IA 102 (249)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCS----EEE--EECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC-TT-SE
T ss_pred CeEEEEee-CHHHHHHHHHHHHcCCC----eEE--EEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC-CC-cE
Confidence 59999995 99999999999998862 244 4454431 145555555555432 21 12
Q ss_pred EEEecC------cccccCCCcEEEEecc
Q 019713 160 VKIGIN------PYELFEDAEWALLIGA 181 (337)
Q Consensus 160 v~i~t~------~~eal~dADvVIitag 181 (337)
+..... ..+.++++|+||.+.+
T Consensus 103 v~~~~~~~~~~~~~~~~~~~DvVi~~~d 130 (249)
T 1jw9_B 103 ITPVNALLDDAELAALIAEHDLVLDCTD 130 (249)
T ss_dssp EEEECSCCCHHHHHHHHHTSSEEEECCS
T ss_pred EEEEeccCCHhHHHHHHhCCCEEEEeCC
Confidence 332211 1245789999998753
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.14 Score=46.67 Aligned_cols=115 Identities=17% Similarity=0.092 Sum_probs=61.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc-----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE----- 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e----- 168 (337)
++|.|+||+|.||.+++..|+..|. .|.+ ++. .+.+.++..+.++.... .++... .| +.+
T Consensus 30 k~~lVTGas~GIG~aia~~la~~G~-----~V~~--~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~ 97 (280)
T 4da9_A 30 PVAIVTGGRRGIGLGIARALAASGF-----DIAI--TGI-GDAEGVAPVIAELSGLG----ARVIFLRADLADLSSHQAT 97 (280)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EES-CCHHHHHHHHHHHHHTT----CCEEEEECCTTSGGGHHHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-----eEEE--EeC-CCHHHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHHH
Confidence 5689999999999999999999875 2443 221 23445554444454321 122211 11 111
Q ss_pred ------ccCCCcEEEEecccC---CCCC--Cch---hhhHHhhH----HHHHHHHHHHHhhc-CCCeEEEEeCC
Q 019713 169 ------LFEDAEWALLIGAKP---RGPG--MER---AGLLDING----QIFAEQGKALNAVA-SRNVKVIVVGN 223 (337)
Q Consensus 169 ------al~dADvVIitag~p---rk~g--~~R---~dll~~N~----~I~~~i~~~I~~~a-~p~aivIvvtN 223 (337)
.+...|++|..+|.. .++- .+. ...+..|+ .+.+...+.+.+.. ...+.||+++-
T Consensus 98 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS 171 (280)
T 4da9_A 98 VDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITS 171 (280)
T ss_dssp HHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_pred HHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcc
Confidence 123789999998862 2221 111 12334443 34556666666541 11567777764
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.16 Score=45.20 Aligned_cols=118 Identities=10% Similarity=-0.009 Sum_probs=63.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc---
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY--- 167 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~--- 167 (337)
.+.++|.|+||+|.+|.+++..|+..|. .|.+. + .++.+.++....++.... .++.. ..| +.
T Consensus 11 ~~~k~vlITGas~giG~~ia~~l~~~G~-----~v~~~--~-~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v 78 (256)
T 3ezl_A 11 MSQRIAYVTGGMGGIGTSICQRLHKDGF-----RVVAG--C-GPNSPRRVKWLEDQKALG----FDFYASEGNVGDWDST 78 (256)
T ss_dssp --CEEEEETTTTSHHHHHHHHHHHHTTE-----EEEEE--E-CTTCSSHHHHHHHHHHTT----CCCEEEECCTTCHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-----EEEEE--e-CCCHHHHHHHHHHHHhcC----CeeEEEecCCCCHHHH
Confidence 3456899999999999999999999875 24332 1 122233333333333221 11111 111 11
Q ss_pred --------cccCCCcEEEEecccCCCCC---Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 168 --------ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 168 --------eal~dADvVIitag~prk~g---~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
+.+...|++|..+|...... .+. ...+..|.. +.+.+.+.+.+. ..+.||+++-..
T Consensus 79 ~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~~ 152 (256)
T 3ezl_A 79 KQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVER--GWGRIINISSVN 152 (256)
T ss_dssp HHHHHHHHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEEcchh
Confidence 12336799999988643211 121 223455533 355566666664 346777777543
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.09 Score=50.30 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
++||+|+||+|.+|..++..|...+
T Consensus 8 ~~kV~IiGAtG~iG~~llr~L~~~p 32 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQRFVQLLADHP 32 (354)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCS
T ss_pred cceEEEECcCCHHHHHHHHHHhcCC
Confidence 3699999999999999999886543
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.044 Score=53.37 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=45.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC-CCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCc----cccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV-LGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP----YELF 170 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l-~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~----~eal 170 (337)
|+||.|+|| |.+|..++..|+..+- +. .|.+ .+++.++++..+.++......-...+..-..+ .+.+
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~---~V~v----~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l 72 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFS---HITL----ASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALI 72 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCC---EEEE----EESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCce---EEEE----EECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHH
Confidence 469999997 9999999999987653 22 2444 35566777766555543110000011111111 2345
Q ss_pred CC--CcEEEEecc
Q 019713 171 ED--AEWALLIGA 181 (337)
Q Consensus 171 ~d--ADvVIitag 181 (337)
++ +|+||.+++
T Consensus 73 ~~~~~DvVin~ag 85 (405)
T 4ina_A 73 NEVKPQIVLNIAL 85 (405)
T ss_dssp HHHCCSEEEECSC
T ss_pred HhhCCCEEEECCC
Confidence 55 899999875
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.059 Score=48.89 Aligned_cols=44 Identities=23% Similarity=0.312 Sum_probs=31.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhH
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL 149 (337)
++|.|+||+|.||.+++..|+..|. .|.+ .+++.++++..+.++
T Consensus 31 k~vlVTGas~GIG~aia~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~~ 74 (281)
T 3ppi_A 31 ASAIVSGGAGGLGEATVRRLHADGL-----GVVI----ADLAAEKGKALADEL 74 (281)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHHh
Confidence 5789999999999999999998875 2444 245555655544433
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.63 E-value=0.019 Score=51.53 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=23.9
Q ss_pred CCCEEEEEcCC--CchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAA--GMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAa--G~VG~~la~~L~~~~l 121 (337)
+.++|.|+||+ |.+|.+++..|+..|.
T Consensus 13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~ 41 (271)
T 3ek2_A 13 DGKRILLTGLLSNRSIAYGIAKACKREGA 41 (271)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHcCC
Confidence 45689999998 8999999999999875
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=94.60 E-value=0.035 Score=57.14 Aligned_cols=108 Identities=11% Similarity=0.047 Sum_probs=63.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-c---Cc---
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I---NP--- 166 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t---~~--- 166 (337)
++++|.|+||+|++|++++..|+.. +. .|.+ + +++.+.+.. +.+ . .++.+. . +.
T Consensus 314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~-----~V~~--~--~r~~~~~~~----~~~---~--~~v~~v~~Dl~d~~~~ 375 (660)
T 1z7e_A 314 RRTRVLILGVNGFIGNHLTERLLREDHY-----EVYG--L--DIGSDAISR----FLN---H--PHFHFVEGDISIHSEW 375 (660)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHSSSE-----EEEE--E--ESCCTTTGG----GTT---C--TTEEEEECCTTTCHHH
T ss_pred cCceEEEEcCCcHHHHHHHHHHHhcCCC-----EEEE--E--EcCchhhhh----hcc---C--CceEEEECCCCCcHHH
Confidence 4578999999999999999999886 43 2332 2 222222211 110 0 112211 1 11
Q ss_pred -ccccCCCcEEEEecccCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 -YELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 -~eal~dADvVIitag~prk~g--~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.++++++|+||.++|....+. .+..+....|+.-...+.+.+.+. . ..+|++|-
T Consensus 376 ~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~--~r~V~~SS 432 (660)
T 1z7e_A 376 IEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R--KRIIFPST 432 (660)
T ss_dssp HHHHHHHCSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T--CEEEEECC
T ss_pred HHHhhcCCCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHh-C--CEEEEEec
Confidence 124668999999887543111 122345667777777788887775 3 56777764
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.094 Score=47.20 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=22.4
Q ss_pred CEEEEEcCC--CchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAA--GMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAa--G~VG~~la~~L~~~~l 121 (337)
++|.|+||+ |.||.+++..|+..|.
T Consensus 10 k~vlVTGas~~~gIG~~ia~~l~~~G~ 36 (265)
T 1qsg_A 10 KRILVTGVASKLSIAYGIAQAMHREGA 36 (265)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCC
Confidence 579999998 8999999999998875
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.056 Score=51.21 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=40.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.+||+||| .|.||..+|..|...|. .|.. + |++.++.+. +... .+... +..+.+++||+
T Consensus 155 g~~vgIIG-~G~iG~~iA~~l~~~G~-----~V~~--~--d~~~~~~~~----~~~~------g~~~~-~l~e~l~~aDv 213 (330)
T 2gcg_A 155 QSTVGIIG-LGRIGQAIARRLKPFGV-----QRFL--Y--TGRQPRPEE----AAEF------QAEFV-STPELAAQSDF 213 (330)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHGGGTC-----CEEE--E--ESSSCCHHH----HHTT------TCEEC-CHHHHHHHCSE
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCCC-----EEEE--E--CCCCcchhH----HHhc------CceeC-CHHHHHhhCCE
Confidence 36899999 49999999999877664 2543 2 333322221 1111 12222 44567899999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
|+++.
T Consensus 214 Vi~~v 218 (330)
T 2gcg_A 214 IVVAC 218 (330)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99976
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=94.48 E-value=0.06 Score=51.48 Aligned_cols=65 Identities=12% Similarity=0.007 Sum_probs=39.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHH-HcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~-~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
.++|+||| .|.||..+|..+. ..|. .|.. +| ++.+..+. +.++ .+....+..+.+++||
T Consensus 163 g~~vgIIG-~G~IG~~vA~~l~~~~G~-----~V~~--~d--~~~~~~~~-~~~~---------g~~~~~~l~ell~~aD 222 (348)
T 2w2k_A 163 GHVLGAVG-LGAIQKEIARKAVHGLGM-----KLVY--YD--VAPADAET-EKAL---------GAERVDSLEELARRSD 222 (348)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCC-----EEEE--EC--SSCCCHHH-HHHH---------TCEECSSHHHHHHHCS
T ss_pred CCEEEEEE-ECHHHHHHHHHHHHhcCC-----EEEE--EC--CCCcchhh-Hhhc---------CcEEeCCHHHHhccCC
Confidence 36899999 5999999999987 5553 2433 33 33322221 1111 1222234456789999
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+|+++.
T Consensus 223 vVil~v 228 (348)
T 2w2k_A 223 CVSVSV 228 (348)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 999975
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.053 Score=49.45 Aligned_cols=116 Identities=11% Similarity=0.060 Sum_probs=61.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc-----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~----- 167 (337)
.++|.|+||+|.||.+++..|+..|. .|.+. +.+. .+.++....++.... .++.. ..| +.
T Consensus 29 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~--~r~~-~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 96 (283)
T 1g0o_A 29 GKVALVTGAGRGIGREMAMELGRRGC-----KVIVN--YANS-TESAEEVVAAIKKNG----SDAACVKANVGVVEDIVR 96 (283)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE--ESSC-HHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE--eCCc-hHHHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHH
Confidence 35799999999999999999998875 24442 2221 122232223333211 11211 111 11
Q ss_pred ------cccCCCcEEEEecccCCCCC---Cc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ------ELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 ------eal~dADvVIitag~prk~g---~~---R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|...... .+ -...+..|..-...+.+.+.++-...+.||+++-
T Consensus 97 ~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 164 (283)
T 1g0o_A 97 MFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS 164 (283)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 12347899999988643211 11 1234666655555555555443223457777764
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.055 Score=49.19 Aligned_cols=106 Identities=13% Similarity=0.175 Sum_probs=59.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC--cc------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY------ 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~--~~------ 167 (337)
++|.|+||+|.||.+++..|+..|. .|.+. +++.++++.... . ++. +..| +.
T Consensus 17 k~vlVTGas~gIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~-------~---~~~~~~~Dv~d~~~v~~~ 77 (266)
T 3p19_A 17 KLVVITGASSGIGEAIARRFSEEGH-----PLLLL----ARRVERLKALNL-------P---NTLCAQVDVTDKYTFDTA 77 (266)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----CEEEE----ESCHHHHHTTCC-------T---TEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHhhc-------C---CceEEEecCCCHHHHHHH
Confidence 5788999999999999999999885 25442 344444432110 0 111 1111 11
Q ss_pred -----cccCCCcEEEEecccCCCCC---Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 -----ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 -----eal~dADvVIitag~prk~g---~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|...... .+. ...+..|+. +.+.+.+.+.+. ..+.||+++-
T Consensus 78 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~~g~IV~isS 146 (266)
T 3p19_A 78 ITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKAR--NCGTIINISS 146 (266)
T ss_dssp HHHHHHHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred HHHHHHHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEcC
Confidence 22337899999988643211 121 123555533 445566666654 3456777764
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.37 E-value=0.052 Score=49.33 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..|.
T Consensus 10 k~vlVTGas~gIG~~ia~~l~~~G~ 34 (270)
T 1yde_A 10 KVVVVTGGGRGIGAGIVRAFVNSGA 34 (270)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC
Confidence 5799999999999999999999875
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.021 Score=50.97 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAA-GEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~-~~l 121 (337)
++++|.|+||+|.||.+++..|+. ++.
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g~ 30 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKNH 30 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTTE
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCCc
Confidence 456799999999999999999987 543
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.037 Score=50.51 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCc--hHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGM--IANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~--VG~~la~~L~~~~l 121 (337)
.++|.|+||+|. +|.+++..|+..|.
T Consensus 26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~ 53 (280)
T 3nrc_A 26 GKKILITGLLSNKSIAYGIAKAMHREGA 53 (280)
T ss_dssp TCEEEECCCCSTTCHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHcCC
Confidence 468999999866 99999999998875
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.081 Score=50.64 Aligned_cols=87 Identities=22% Similarity=0.185 Sum_probs=49.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|+||| .|.||..+|..+...|. .|. .+ |++.+.. . . .....+..+.+++||+|
T Consensus 172 ktiGIIG-lG~IG~~vA~~l~~~G~-----~V~--~~--dr~~~~~----------~-~----~~~~~sl~ell~~aDvV 226 (340)
T 4dgs_A 172 KRIGVLG-LGQIGRALASRAEAFGM-----SVR--YW--NRSTLSG----------V-D----WIAHQSPVDLARDSDVL 226 (340)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTTC-----EEE--EE--CSSCCTT----------S-C----CEECSSHHHHHHTCSEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-----EEE--EE--cCCcccc----------c-C----ceecCCHHHHHhcCCEE
Confidence 6999999 59999999999876554 243 23 3332220 0 1 11223456789999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHH-HHHHHHHHhhcCCCeEEEEeCC
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIF-AEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~-~~i~~~I~~~a~p~aivIvvtN 223 (337)
+++... . .+ +..++ ++ .+... +|++++|+++.
T Consensus 227 il~vP~--t--~~-------t~~li~~~---~l~~m-k~gailIN~aR 259 (340)
T 4dgs_A 227 AVCVAA--S--AA-------TQNIVDAS---LLQAL-GPEGIVVNVAR 259 (340)
T ss_dssp EECC---------------------CHH---HHHHT-TTTCEEEECSC
T ss_pred EEeCCC--C--HH-------HHHHhhHH---HHhcC-CCCCEEEECCC
Confidence 997521 1 11 11111 22 23333 68899999874
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.053 Score=47.52 Aligned_cols=105 Identities=12% Similarity=0.067 Sum_probs=59.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.+++.|+||+|.||.+++..|+..+. .|.+ .+ ++.+ .|+.|... + ..-.+.+...|+
T Consensus 6 ~k~vlVTGas~gIG~~~a~~l~~~G~-----~V~~--~~--r~~~------~D~~~~~~-----v---~~~~~~~g~id~ 62 (223)
T 3uce_A 6 KTVYVVLGGTSGIGAELAKQLESEHT-----IVHV--AS--RQTG------LDISDEKS-----V---YHYFETIGAFDH 62 (223)
T ss_dssp CEEEEEETTTSHHHHHHHHHHCSTTE-----EEEE--ES--GGGT------CCTTCHHH-----H---HHHHHHHCSEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE--ec--CCcc------cCCCCHHH-----H---HHHHHHhCCCCE
Confidence 35788999999999999999987764 2433 22 2221 33333210 0 001123457899
Q ss_pred EEEecccCC--CCC--Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 176 ALLIGAKPR--GPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 176 VIitag~pr--k~g--~~R---~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+|..+|... ++- .+. ...+..|..-...+.+.+.++-.+++.||+++-
T Consensus 63 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS 117 (223)
T 3uce_A 63 LIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSG 117 (223)
T ss_dssp EEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred EEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecc
Confidence 999888542 221 121 234566665555555555554334567777774
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.1 Score=49.62 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
+||+|+||+|.+|..++..|...+
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~ 24 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARN 24 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 589999999999999999887554
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.14 Score=45.29 Aligned_cols=110 Identities=17% Similarity=0.171 Sum_probs=53.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHH---------hHhhhccCCcccEEEecCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM---------ELEDSLFPLLREVKIGINP 166 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~---------DL~d~~~~~~~~v~i~t~~ 166 (337)
.++|.|+||+|.+|.+++..|+. +. .|.+ .+++.+.++..+. |+.+.... ......
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~-g~-----~v~~----~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~-----~~~~~~ 69 (245)
T 3e9n_A 5 KKIAVVTGATGGMGIEIVKDLSR-DH-----IVYA----LGRNPEHLAALAEIEGVEPIESDIVKEVLE-----EGGVDK 69 (245)
T ss_dssp -CEEEEESTTSHHHHHHHHHHTT-TS-----EEEE----EESCHHHHHHHHTSTTEEEEECCHHHHHHT-----SSSCGG
T ss_pred CCEEEEEcCCCHHHHHHHHHHhC-CC-----eEEE----EeCCHHHHHHHHhhcCCcceecccchHHHH-----HHHHHH
Confidence 35799999999999999999976 32 1433 2344444443221 11111000 000011
Q ss_pred ccccCCCcEEEEecccCCCCC---Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 YELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 ~eal~dADvVIitag~prk~g---~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+...|++|..+|...... .+. ...+..|.. +.+.+.+.+++. . +.||+++-
T Consensus 70 ~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~-g~iv~isS 133 (245)
T 3e9n_A 70 LKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAA--S-GCVIYINS 133 (245)
T ss_dssp GTTCSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--T-CEEEEEC-
T ss_pred HHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc--C-CeEEEEcC
Confidence 233457899999988643211 111 123444533 355556666553 2 46666664
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.64 Score=42.41 Aligned_cols=111 Identities=14% Similarity=0.064 Sum_probs=69.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC----------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN---------- 165 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~---------- 165 (337)
+.+.|+||++-||.++|..|+..|. .|.+ .++++++++..+.++..... ++. +..|
T Consensus 8 KvalVTGas~GIG~aiA~~la~~Ga-----~Vv~----~~~~~~~~~~~~~~i~~~g~----~~~~~~~Dvt~~~~v~~~ 74 (254)
T 4fn4_A 8 KVVIVTGAGSGIGRAIAKKFALNDS-----IVVA----VELLEDRLNQIVQELRGMGK----EVLGVKADVSKKKDVEEF 74 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTC----CEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-----EEEE----EECCHHHHHHHHHHHHhcCC----cEEEEEccCCCHHHHHHH
Confidence 5678889999999999999998886 2554 35566777777777764321 111 1111
Q ss_pred ---cccccCCCcEEEEecccC--CCCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 166 ---PYELFEDAEWALLIGAKP--RGPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 166 ---~~eal~dADvVIitag~p--rk~g--~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
-.+.+..-|++|..||.. .+|- .+.. ..+..| .-..+...+.|.+. ..+.||+++
T Consensus 75 ~~~~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~~G~IVnis 143 (254)
T 4fn4_A 75 VRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQ--GKGVIVNTA 143 (254)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEC
T ss_pred HHHHHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEEe
Confidence 124456889999988853 3332 1222 234444 34567777887775 356777776
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.11 Score=47.17 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=42.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEEE
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVI 177 (337)
||+|||+ |.+|..++..|...+. + |.+ .+++.++++..+.++. . . ..+..+. +++|+||
T Consensus 118 ~v~iiG~-G~~g~~~a~~l~~~g~--~---v~v----~~r~~~~~~~l~~~~~----~---~---~~~~~~~-~~~Divi 176 (263)
T 2d5c_A 118 PALVLGA-GGAGRAVAFALREAGL--E---VWV----WNRTPQRALALAEEFG----L---R---AVPLEKA-REARLLV 176 (263)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTC--C---EEE----ECSSHHHHHHHHHHHT----C---E---ECCGGGG-GGCSEEE
T ss_pred eEEEECC-cHHHHHHHHHHHHCCC--E---EEE----EECCHHHHHHHHHHhc----c---c---hhhHhhc-cCCCEEE
Confidence 8999995 9999999999988774 2 544 2455555554432221 1 1 2334455 8999999
Q ss_pred Eeccc
Q 019713 178 LIGAK 182 (337)
Q Consensus 178 itag~ 182 (337)
.+...
T Consensus 177 ~~tp~ 181 (263)
T 2d5c_A 177 NATRV 181 (263)
T ss_dssp ECSST
T ss_pred EccCC
Confidence 98643
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.17 Score=44.24 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
.++|.|+||+|.+|.+++..|+..+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~g 27 (250)
T 1yo6_A 3 PGSVVVTGANRGIGLGLVQQLVKDK 27 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCT
T ss_pred CCEEEEecCCchHHHHHHHHHHhcC
Confidence 3589999999999999999999876
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=94.13 E-value=0.39 Score=39.64 Aligned_cols=29 Identities=28% Similarity=0.293 Sum_probs=22.6
Q ss_pred ccCCCEEEEEcCC---CchHHHHHHHHHHcCC
Q 019713 93 WKKMVNIAVSGAA---GMIANHLLFKLAAGEV 121 (337)
Q Consensus 93 ~~~~~KI~IIGAa---G~VG~~la~~L~~~~l 121 (337)
..++.+|+|||++ |.+|+.++..|...+.
T Consensus 11 l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~ 42 (138)
T 1y81_A 11 SKEFRKIALVGASKNPAKYGNIILKDLLSKGF 42 (138)
T ss_dssp ---CCEEEEETCCSCTTSHHHHHHHHHHHTTC
T ss_pred ccCCCeEEEEeecCCCCCHHHHHHHHHHHCCC
Confidence 3467899999943 9999999999988775
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.12 E-value=0.17 Score=47.77 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=20.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHH
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAA 118 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~ 118 (337)
++++||+||| +|.+|..++..|..
T Consensus 2 ~~~irVaIIG-~G~iG~~~~~~l~~ 25 (312)
T 1nvm_B 2 NQKLKVAIIG-SGNIGTDLMIKVLR 25 (312)
T ss_dssp CSCEEEEEEC-CSHHHHHHHHHHHH
T ss_pred CCCCEEEEEc-CcHHHHHHHHHHHh
Confidence 3568999999 59999999888865
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.089 Score=48.47 Aligned_cols=25 Identities=16% Similarity=-0.017 Sum_probs=22.4
Q ss_pred CEEEEEcCCCc--hHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGM--IANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~--VG~~la~~L~~~~l 121 (337)
++|.|+||+|. ||.+++..|+..|.
T Consensus 32 k~~lVTGasg~~GIG~aia~~la~~G~ 58 (293)
T 3grk_A 32 KRGLILGVANNRSIAWGIAKAAREAGA 58 (293)
T ss_dssp CEEEEECCCSSSSHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHCCC
Confidence 57999999887 99999999999875
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.086 Score=47.90 Aligned_cols=27 Identities=15% Similarity=0.000 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+.++|.|+||+|.||.+++..|+..|.
T Consensus 13 ~~k~vlVTGas~GIG~aia~~l~~~G~ 39 (269)
T 3vtz_A 13 TDKVAIVTGGSSGIGLAVVDALVRYGA 39 (269)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 346899999999999999999999875
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.092 Score=49.61 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=42.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEE-eccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC-
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALK-LLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE- 171 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~-L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~- 171 (337)
.+++||+|||+ |.+|...+..|.... . .+.+. +. |++.++++..+... . +..+++..+.++
T Consensus 11 ~~~~rvgiiG~-G~~g~~~~~~l~~~~--~---~~~lvav~--d~~~~~~~~~~~~~-----~----~~~~~~~~~ll~~ 73 (354)
T 3q2i_A 11 DRKIRFALVGC-GRIANNHFGALEKHA--D---RAELIDVC--DIDPAALKAAVERT-----G----ARGHASLTDMLAQ 73 (354)
T ss_dssp SSCEEEEEECC-STTHHHHHHHHHHTT--T---TEEEEEEE--CSSHHHHHHHHHHH-----C----CEEESCHHHHHHH
T ss_pred CCcceEEEEcC-cHHHHHHHHHHHhCC--C---CeEEEEEE--cCCHHHHHHHHHHc-----C----CceeCCHHHHhcC
Confidence 35689999995 999999998887652 0 12222 33 45556655433211 1 244455445555
Q ss_pred -CCcEEEEec
Q 019713 172 -DAEWALLIG 180 (337)
Q Consensus 172 -dADvVIita 180 (337)
++|+|+++.
T Consensus 74 ~~~D~V~i~t 83 (354)
T 3q2i_A 74 TDADIVILTT 83 (354)
T ss_dssp CCCSEEEECS
T ss_pred CCCCEEEECC
Confidence 899999864
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=93.99 E-value=0.06 Score=51.84 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
++||+|+||+|.+|..++..|...+
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p 40 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHP 40 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCS
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCC
Confidence 3699999999999999999988654
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.044 Score=51.32 Aligned_cols=93 Identities=18% Similarity=0.259 Sum_probs=54.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|+||| .|.||..+|..|...|. .|.. + |++.+..+. +....+..+.+++||+|
T Consensus 123 ~tvGIIG-lG~IG~~vA~~l~~~G~-----~V~~--~--dr~~~~~~~---------------~~~~~~l~ell~~aDiV 177 (290)
T 3gvx_A 123 KALGILG-YGGIGRRVAHLAKAFGM-----RVIA--Y--TRSSVDQNV---------------DVISESPADLFRQSDFV 177 (290)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTC-----EEEE--E--CSSCCCTTC---------------SEECSSHHHHHHHCSEE
T ss_pred chheeec-cCchhHHHHHHHHhhCc-----EEEE--E--ecccccccc---------------ccccCChHHHhhccCeE
Confidence 6999999 59999999999987664 2432 3 333222111 11223456788999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--CchhH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTN 228 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN--Pvd~~ 228 (337)
+++... .+ .+| .++ | + +.+... +|++++|+++- ++|.-
T Consensus 178 ~l~~P~--t~-~t~-~li--~----~---~~l~~m-k~gailIN~aRG~~vd~~ 217 (290)
T 3gvx_A 178 LIAIPL--TD-KTR-GMV--N----S---RLLANA-RKNLTIVNVARADVVSKP 217 (290)
T ss_dssp EECCCC--CT-TTT-TCB--S----H---HHHTTC-CTTCEEEECSCGGGBCHH
T ss_pred EEEeec--cc-cch-hhh--h----H---HHHhhh-hcCceEEEeehhcccCCc
Confidence 997521 11 111 111 1 1 223343 68999999873 44443
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.085 Score=50.07 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=39.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.+||+||| .|.||..+|..|...|. .|.. +| ++.+. + .+.++ . +.. .+..+.+++||+
T Consensus 150 g~~vgIIG-~G~iG~~iA~~l~~~G~-----~V~~--~d--~~~~~-~-~~~~~-----g----~~~-~~l~~~l~~aDv 207 (334)
T 2dbq_A 150 GKTIGIIG-LGRIGQAIAKRAKGFNM-----RILY--YS--RTRKE-E-VEREL-----N----AEF-KPLEDLLRESDF 207 (334)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--EC--SSCCH-H-HHHHH-----C----CEE-CCHHHHHHHCSE
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhCCC-----EEEE--EC--CCcch-h-hHhhc-----C----ccc-CCHHHHHhhCCE
Confidence 36999999 59999999999987553 2433 33 33332 1 11111 1 122 344567899999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
|+++.
T Consensus 208 Vil~v 212 (334)
T 2dbq_A 208 VVLAV 212 (334)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99976
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.27 Score=46.01 Aligned_cols=116 Identities=11% Similarity=0.130 Sum_probs=63.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc-----ccchhhHHHhHHHhHhhhccCCcccEEEecCcc----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG-----SERSLQALEGVAMELEDSLFPLLREVKIGINPY---- 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d-----~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~---- 167 (337)
++|.|+||+|.||.+++..|+..|. .|.+...+ ..++.++++..+.++.... . .+..-..+.
T Consensus 10 k~~lVTGas~GIG~~~a~~La~~Ga-----~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~-~---~~~~D~~~~~~~~ 80 (319)
T 1gz6_A 10 RVVLVTGAGGGLGRAYALAFAERGA-----LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG-G---KAVANYDSVEAGE 80 (319)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT-C---EEEEECCCGGGHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEEcCCcccccccCCHHHHHHHHHHHHhhC-C---eEEEeCCCHHHHH
Confidence 5799999999999999999999875 24442111 0123445554444454321 1 111111111
Q ss_pred -------cccCCCcEEEEecccCCCCC---Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 -------ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 -------eal~dADvVIitag~prk~g---~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|....+. .+. ...+..|.. +.+...+.+++. ..+.||+++-
T Consensus 81 ~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~grIV~vsS 151 (319)
T 1gz6_A 81 KLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ--NYGRIIMTAS 151 (319)
T ss_dssp HHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEECC
Confidence 12447899999988654321 121 123445543 345555556653 3457777763
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.13 Score=46.11 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=22.9
Q ss_pred CCEEEEEcCC--CchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAA--GMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAa--G~VG~~la~~L~~~~l 121 (337)
.++|.|+||+ |.+|.+++..|+..|.
T Consensus 8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~ 35 (261)
T 2wyu_A 8 GKKALVMGVTNQRSLGFAIAAKLKEAGA 35 (261)
T ss_dssp TCEEEEESCCSSSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCC
Confidence 3579999998 8999999999998875
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.43 Score=43.60 Aligned_cols=117 Identities=16% Similarity=0.072 Sum_probs=68.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccC---CcccEEEe-------cCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP---LLREVKIG-------INP 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~---~~~~v~i~-------t~~ 166 (337)
+.+.|+||++-||.+++..|+..|. .|.+ .+++++.++..+.++.+.... +..+++-. ..-
T Consensus 10 KvalVTGas~GIG~aia~~la~~Ga-----~Vvi----~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~ 80 (255)
T 4g81_D 10 KTALVTGSARGLGFAYAEGLAAAGA-----RVIL----NDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKL 80 (255)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----CCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 4677889999999999999999886 2544 355666766666666543211 00011000 011
Q ss_pred ccccCCCcEEEEecccCC-CCC--Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 YELFEDAEWALLIGAKPR-GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 ~eal~dADvVIitag~pr-k~g--~~R~---dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+..-|++|..+|... ++- .+.. ..+..|+ -..+...+.+.+- ...+.||+++-
T Consensus 81 ~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~~G~IVnisS 146 (255)
T 4g81_D 81 DAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIAR-NSGGKIINIGS 146 (255)
T ss_dssp HHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECC
T ss_pred HHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-cCCCEEEEEee
Confidence 234567899999888643 221 1222 2345553 3456777777553 45677888873
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.065 Score=49.33 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=48.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC-cccEEEec--CcccccCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGI--NPYELFED 172 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~t--~~~eal~d 172 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.++++..+.++.... .. .....++. +-.+.+++
T Consensus 119 gk~vlVtGaaGGiG~aia~~L~~~G~-----~V~i----~~R~~~~~~~l~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~ 188 (287)
T 1lu9_A 119 GKKAVVLAGTGPVGMRSAALLAGEGA-----EVVL----CGRKLDKAQAAADSVNKRF-KVNVTAAETADDASRAEAVKG 188 (287)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHHH-TCCCEEEECCSHHHHHHHTTT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-----EEEE----EECCHHHHHHHHHHHHhcC-CcEEEEecCCCHHHHHHHHHh
Confidence 36899999889999999999998774 2444 2455566665555554311 11 01112211 11355778
Q ss_pred CcEEEEeccc
Q 019713 173 AEWALLIGAK 182 (337)
Q Consensus 173 ADvVIitag~ 182 (337)
+|+||.++|.
T Consensus 189 ~DvlVn~ag~ 198 (287)
T 1lu9_A 189 AHFVFTAGAI 198 (287)
T ss_dssp CSEEEECCCT
T ss_pred CCEEEECCCc
Confidence 9999998864
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.69 Score=41.79 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.||.+++..|+..|.
T Consensus 6 ~k~~lVTGas~GIG~aia~~la~~G~ 31 (274)
T 3e03_A 6 GKTLFITGASRGIGLAIALRAARDGA 31 (274)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC
Confidence 35799999999999999999999875
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.75 E-value=1.2 Score=39.51 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=31.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
++|.|+||+|.+|.+++..|+..|. .|.+. +++.+.++....++.
T Consensus 6 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~ 50 (260)
T 2qq5_A 6 QVCVVTGASRGIGRGIALQLCKAGA-----TVYIT----GRHLDTLRVVAQEAQ 50 (260)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHH
Confidence 5789999999999999999998874 24442 345555554444443
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=93.71 E-value=0.22 Score=43.93 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..|.
T Consensus 3 k~vlVTGas~giG~~~a~~l~~~G~ 27 (239)
T 2ekp_A 3 RKALVTGGSRGIGRAIAEALVARGY 27 (239)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 4799999999999999999998774
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.19 Score=45.42 Aligned_cols=117 Identities=11% Similarity=0.053 Sum_probs=60.4
Q ss_pred CCEEEEEcCC--CchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcc------
Q 019713 96 MVNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY------ 167 (337)
Q Consensus 96 ~~KI~IIGAa--G~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~------ 167 (337)
.++|.|+||+ |.||.+++..|+..|. .|.+. +++.+ ++....++.... +-..-+..--.+.
T Consensus 6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~-----~V~~~----~r~~~-~~~~~~~l~~~~-~~~~~~~~D~~~~~~v~~~ 74 (275)
T 2pd4_A 6 GKKGLIVGVANNKSIAYGIAQSCFNQGA-----TLAFT----YLNES-LEKRVRPIAQEL-NSPYVYELDVSKEEHFKSL 74 (275)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTC-----EEEEE----ESSTT-THHHHHHHHHHT-TCCCEEECCTTCHHHHHHH
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCC-----EEEEE----eCCHH-HHHHHHHHHHhc-CCcEEEEcCCCCHHHHHHH
Confidence 3579999998 8999999999998774 24442 22322 111222232211 1000011000111
Q ss_pred -----cccCCCcEEEEecccCCC-----C--CCch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 -----ELFEDAEWALLIGAKPRG-----P--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 -----eal~dADvVIitag~prk-----~--g~~R---~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|.... + ..+. ...+..|..-...+.+.+.+.-.+++.||+++-
T Consensus 75 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 145 (275)
T 2pd4_A 75 YNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSY 145 (275)
T ss_dssp HHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred HHHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEec
Confidence 112367999999886431 1 1111 234566765555556655543222467777764
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.24 Score=45.74 Aligned_cols=95 Identities=18% Similarity=0.151 Sum_probs=55.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.++|+|||+ |.+|..++..|...|. .|.. .|++.++++.. .+. . ....-..+..+.++++|+
T Consensus 155 g~~v~IiG~-G~iG~~~a~~l~~~G~-----~V~~----~dr~~~~~~~~----~~~--g--~~~~~~~~l~~~l~~aDv 216 (293)
T 3d4o_A 155 GANVAVLGL-GRVGMSVARKFAALGA-----KVKV----GARESDLLARI----AEM--G--MEPFHISKAAQELRDVDV 216 (293)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHH----HHT--T--SEEEEGGGHHHHTTTCSE
T ss_pred CCEEEEEee-CHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHH----HHC--C--CeecChhhHHHHhcCCCE
Confidence 469999995 9999999999887664 2433 24444443211 111 1 111111233466899999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-CCchh
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNT 227 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt-NPvd~ 227 (337)
|+++... ++ + |. +.++.. .|++++|+++ +|.++
T Consensus 217 Vi~~~p~----~~-----i--~~-------~~l~~m-k~~~~lin~ar~~~~~ 250 (293)
T 3d4o_A 217 CINTIPA----LV-----V--TA-------NVLAEM-PSHTFVIDLASKPGGT 250 (293)
T ss_dssp EEECCSS----CC-----B--CH-------HHHHHS-CTTCEEEECSSTTCSB
T ss_pred EEECCCh----HH-----h--CH-------HHHHhc-CCCCEEEEecCCCCCC
Confidence 9998621 21 1 11 123333 6788999988 66544
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.51 Score=44.71 Aligned_cols=117 Identities=12% Similarity=0.093 Sum_probs=61.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchh---hHHHhHHHhHhhhccCCcccEEE-ecC--cc---
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFPLLREVKI-GIN--PY--- 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~---~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~--- 167 (337)
++|.|+||+|.||.+++..|+..|. .|.+...+.+..+ +.++..+.++.... .++.. ..| +.
T Consensus 46 k~vlVTGas~GIG~aia~~La~~Ga-----~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g----~~~~~~~~Dv~d~~~v 116 (346)
T 3kvo_A 46 CTVFITGASRGIGKAIALKAAKDGA-----NIVIAAKTAQPHPKLLGTIYTAAEEIEAVG----GKALPCIVDVRDEQQI 116 (346)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-----EEEEEESCCSCCSSSCCCHHHHHHHHHHTT----CEEEEEECCTTCHHHH
T ss_pred CEEEEeCCChHHHHHHHHHHHHCCC-----EEEEEECChhhhhhhHHHHHHHHHHHHhcC----CeEEEEEccCCCHHHH
Confidence 5799999999999999999998875 2544322211110 01333333343321 11211 111 11
Q ss_pred --------cccCCCcEEEEecccCCCCC---Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 168 --------ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 168 --------eal~dADvVIitag~prk~g---~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
+.+...|++|..+|...... .+. ...+..|+. +.+...+.+.+ ...+.||+++-+
T Consensus 117 ~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~--~~~g~IV~iSS~ 189 (346)
T 3kvo_A 117 SAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKK--SKVAHILNISPP 189 (346)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CSSCEEEEECCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH--CCCCEEEEECCH
Confidence 12347899999988542211 111 234555644 34444455554 245677888754
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.061 Score=49.88 Aligned_cols=117 Identities=11% Similarity=0.030 Sum_probs=62.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-------cCcccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYEL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-------t~~~ea 169 (337)
+.+.|+||++-||.++|..|+..|. .|.+ .+++.++++..+.++......+..+++-. ..-.+.
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga-----~V~i----~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 100 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGA-----RVFI----TGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAE 100 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 4567789999999999999999886 2554 35566777766655532111110011000 011234
Q ss_pred cCCCcEEEEecccC-CCCC--Cc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 170 FEDAEWALLIGAKP-RGPG--ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 170 l~dADvVIitag~p-rk~g--~~---R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+..-|++|..+|.. .+|- .+ -.+.+..|+.-.--.++..-.+-..++.||+++
T Consensus 101 ~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 101 AGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp HSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred cCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 55789999888753 2332 12 223455664433333333322222345666665
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=93.59 E-value=0.081 Score=49.99 Aligned_cols=69 Identities=19% Similarity=0.125 Sum_probs=41.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEE-eccccchhhHHHhHHHhHhhhccCCcccEEEecCccccc--
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALK-LLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-- 170 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~-L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal-- 170 (337)
.+++||+|||+ |.+|...+..|...+- +.+. +. |++.++++..+.+. . +..+++..+.+
T Consensus 3 ~~~~~vgiiG~-G~~g~~~~~~l~~~~~------~~lvav~--d~~~~~~~~~~~~~-----g----~~~~~~~~~~l~~ 64 (354)
T 3db2_A 3 YNPVGVAAIGL-GRWAYVMADAYTKSEK------LKLVTCY--SRTEDKREKFGKRY-----N----CAGDATMEALLAR 64 (354)
T ss_dssp CCCEEEEEECC-SHHHHHHHHHHTTCSS------EEEEEEE--CSSHHHHHHHHHHH-----T----CCCCSSHHHHHHC
T ss_pred CCcceEEEEcc-CHHHHHHHHHHHhCCC------cEEEEEE--CCCHHHHHHHHHHc-----C----CCCcCCHHHHhcC
Confidence 45689999995 9999998888765321 3322 33 45556655443221 1 11234444555
Q ss_pred CCCcEEEEec
Q 019713 171 EDAEWALLIG 180 (337)
Q Consensus 171 ~dADvVIita 180 (337)
.++|+|+++.
T Consensus 65 ~~~D~V~i~t 74 (354)
T 3db2_A 65 EDVEMVIITV 74 (354)
T ss_dssp SSCCEEEECS
T ss_pred CCCCEEEEeC
Confidence 5799998864
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=93.55 E-value=0.069 Score=48.36 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.||.+++..|+..|.
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~ 33 (264)
T 2dtx_A 8 DKVVIVTGASMGIGRAIAERFVDEGS 33 (264)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 35899999999999999999998875
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.084 Score=49.26 Aligned_cols=76 Identities=16% Similarity=0.092 Sum_probs=47.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.++|.|+|| |.+|..++..|+..+.. .|.+ .+++.++++..+.++... . ..+....+..+.++++|+
T Consensus 141 ~~~vlVlGa-Gg~g~aia~~L~~~G~~----~V~v----~nR~~~ka~~la~~~~~~---~-~~~~~~~~~~~~~~~aDi 207 (297)
T 2egg_A 141 GKRILVIGA-GGGARGIYFSLLSTAAE----RIDM----ANRTVEKAERLVREGDER---R-SAYFSLAEAETRLAEYDI 207 (297)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTTCS----EEEE----ECSSHHHHHHHHHHSCSS---S-CCEECHHHHHHTGGGCSE
T ss_pred CCEEEEECc-HHHHHHHHHHHHHCCCC----EEEE----EeCCHHHHHHHHHHhhhc---c-CceeeHHHHHhhhccCCE
Confidence 468999995 99999999999887642 2444 355666766555433210 0 011111123467889999
Q ss_pred EEEecccCC
Q 019713 176 ALLIGAKPR 184 (337)
Q Consensus 176 VIitag~pr 184 (337)
||.+.+.+.
T Consensus 208 vIn~t~~~~ 216 (297)
T 2egg_A 208 IINTTSVGM 216 (297)
T ss_dssp EEECSCTTC
T ss_pred EEECCCCCC
Confidence 999876543
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=93.52 E-value=0.14 Score=48.47 Aligned_cols=74 Identities=18% Similarity=0.117 Sum_probs=41.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEE-EeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIAL-KLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L-~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~ 171 (337)
+.+++||+|||+ |.+|..++..|...+- +.+ .+. |++.++++..+... ........+++..+.++
T Consensus 3 ~~~~~~vgiiG~-G~ig~~~~~~l~~~~~------~~lv~v~--d~~~~~~~~~a~~~-----~~~~~~~~~~~~~~ll~ 68 (362)
T 1ydw_A 3 TETQIRIGVMGC-ADIARKVSRAIHLAPN------ATISGVA--SRSLEKAKAFATAN-----NYPESTKIHGSYESLLE 68 (362)
T ss_dssp ---CEEEEEESC-CTTHHHHHHHHHHCTT------EEEEEEE--CSSHHHHHHHHHHT-----TCCTTCEEESSHHHHHH
T ss_pred CCCceEEEEECc-hHHHHHHHHHHhhCCC------cEEEEEE--cCCHHHHHHHHHHh-----CCCCCCeeeCCHHHHhc
Confidence 345689999995 9999998888876432 222 223 45555554433211 11112344444444554
Q ss_pred --CCcEEEEec
Q 019713 172 --DAEWALLIG 180 (337)
Q Consensus 172 --dADvVIita 180 (337)
++|+|+++.
T Consensus 69 ~~~~D~V~i~t 79 (362)
T 1ydw_A 69 DPEIDALYVPL 79 (362)
T ss_dssp CTTCCEEEECC
T ss_pred CCCCCEEEEcC
Confidence 699999864
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.081 Score=49.93 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=45.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
...+|+||| +|.+|...+..|....-+. .|.+ ++. + +++..+.++.+.. . .++... +..+++++||
T Consensus 120 ~~~~v~iIG-aG~~a~~~~~al~~~~~~~---~V~v--~~r--~--~a~~la~~l~~~~-g--~~~~~~-~~~eav~~aD 185 (313)
T 3hdj_A 120 RSSVLGLFG-AGTQGAEHAAQLSARFALE---AILV--HDP--Y--ASPEILERIGRRC-G--VPARMA-APADIAAQAD 185 (313)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHHSCCC---EEEE--ECT--T--CCHHHHHHHHHHH-T--SCEEEC-CHHHHHHHCS
T ss_pred CCcEEEEEC-ccHHHHHHHHHHHHhCCCc---EEEE--ECC--c--HHHHHHHHHHHhc-C--CeEEEe-CHHHHHhhCC
Confidence 357999999 5999999998887532222 2444 443 3 4444444454321 1 234454 6678899999
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+||.+-
T Consensus 186 IVi~aT 191 (313)
T 3hdj_A 186 IVVTAT 191 (313)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 999864
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.36 Score=43.53 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.||.+++..|+..|.
T Consensus 28 k~vlVTGas~gIG~aia~~l~~~G~ 52 (260)
T 3gem_A 28 APILITGASQRVGLHCALRLLEHGH 52 (260)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC
Confidence 5799999999999999999999875
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=93.44 E-value=0.27 Score=48.60 Aligned_cols=91 Identities=10% Similarity=0.053 Sum_probs=54.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
-++|+|+| .|.||..+|..|...|. .|.. +| ++..+... +. .+ . +.. .+..+.+++||+
T Consensus 211 GktVgIiG-~G~IG~~vA~~Lka~Ga-----~Viv--~D--~~p~~a~~-A~--~~---G----~~~-~sL~eal~~ADV 269 (436)
T 3h9u_A 211 GKTACVCG-YGDVGKGCAAALRGFGA-----RVVV--TE--VDPINALQ-AA--ME---G----YQV-LLVEDVVEEAHI 269 (436)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--EC--SCHHHHHH-HH--HT---T----CEE-CCHHHHTTTCSE
T ss_pred CCEEEEEe-eCHHHHHHHHHHHHCCC-----EEEE--EC--CChhhhHH-HH--Hh---C----Cee-cCHHHHHhhCCE
Confidence 46999999 59999999999987664 2433 33 33333221 11 11 1 112 245688999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
|+.+.+.. ++ +. .+.++.. +++++||+++++-
T Consensus 270 Vilt~gt~---~i-----I~---------~e~l~~M-K~gAIVINvgRg~ 301 (436)
T 3h9u_A 270 FVTTTGND---DI-----IT---------SEHFPRM-RDDAIVCNIGHFD 301 (436)
T ss_dssp EEECSSCS---CS-----BC---------TTTGGGC-CTTEEEEECSSSG
T ss_pred EEECCCCc---Cc-----cC---------HHHHhhc-CCCcEEEEeCCCC
Confidence 99865322 11 00 0123333 6899999999874
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.39 E-value=0.15 Score=45.41 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 7 ~k~vlVTGas~giG~~ia~~l~~~G~ 32 (250)
T 2fwm_X 7 GKNVWVTGAGKGIGYATALAFVEAGA 32 (250)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 35899999999999999999998874
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=93.37 E-value=0.14 Score=48.43 Aligned_cols=68 Identities=16% Similarity=0.091 Sum_probs=39.9
Q ss_pred CCCEEEEEcCCCchHH-HHHHHHHHcCCCCCCCceEEE-eccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC-
Q 019713 95 KMVNIAVSGAAGMIAN-HLLFKLAAGEVLGPDQPIALK-LLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE- 171 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~-~la~~L~~~~l~~e~~~v~L~-L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~- 171 (337)
+++||+|||+ |.+|. .++..|...+- +.+. +. |++.++++..+... . +...++..+.++
T Consensus 26 ~~~rigiIG~-G~~g~~~~~~~l~~~~~------~~l~av~--d~~~~~~~~~a~~~-----g----~~~~~~~~~ll~~ 87 (350)
T 3rc1_A 26 NPIRVGVIGC-ADIAWRRALPALEAEPL------TEVTAIA--SRRWDRAKRFTERF-----G----GEPVEGYPALLER 87 (350)
T ss_dssp CCEEEEEESC-CHHHHHTHHHHHHHCTT------EEEEEEE--ESSHHHHHHHHHHH-----C----SEEEESHHHHHTC
T ss_pred CceEEEEEcC-cHHHHHHHHHHHHhCCC------eEEEEEE--cCCHHHHHHHHHHc-----C----CCCcCCHHHHhcC
Confidence 4579999995 99998 68888876432 2222 22 45555555433211 1 122234445554
Q ss_pred -CCcEEEEec
Q 019713 172 -DAEWALLIG 180 (337)
Q Consensus 172 -dADvVIita 180 (337)
+.|+|+++.
T Consensus 88 ~~~D~V~i~t 97 (350)
T 3rc1_A 88 DDVDAVYVPL 97 (350)
T ss_dssp TTCSEEEECC
T ss_pred CCCCEEEECC
Confidence 589998864
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.42 Score=43.37 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=22.4
Q ss_pred CEEEEEcCC--CchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAA--GMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAa--G~VG~~la~~L~~~~l 121 (337)
++|.|+||+ |.||.+++..|+..|.
T Consensus 22 k~vlVTGas~~~gIG~~ia~~l~~~G~ 48 (285)
T 2p91_A 22 KRALITGVANERSIAYGIAKSFHREGA 48 (285)
T ss_dssp CEEEECCCSSTTSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCC
Confidence 579999998 8999999999998874
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=93.31 E-value=0.18 Score=47.50 Aligned_cols=92 Identities=11% Similarity=0.168 Sum_probs=51.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc-hhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~-~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
++|+||| .|.||..+|..|...|. .|. .+| + +.+... +.++ . +....+..+.+++||+
T Consensus 147 ~~vgIIG-~G~IG~~~A~~l~~~G~-----~V~--~~d--~~~~~~~~--~~~~-----g----~~~~~~l~ell~~aDv 205 (320)
T 1gdh_A 147 KTLGIYG-FGSIGQALAKRAQGFDM-----DID--YFD--THRASSSD--EASY-----Q----ATFHDSLDSLLSVSQF 205 (320)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTTC-----EEE--EEC--SSCCCHHH--HHHH-----T----CEECSSHHHHHHHCSE
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCCC-----EEE--EEC--CCCcChhh--hhhc-----C----cEEcCCHHHHHhhCCE
Confidence 6899999 59999999999875442 233 333 3 322211 1111 1 1222244577889999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|+++... .+. ++ .++. + +.+... ++++++|+++-
T Consensus 206 Vil~~p~--~~~-t~-~~i~------~---~~l~~m-k~gailIn~ar 239 (320)
T 1gdh_A 206 FSLNAPS--TPE-TR-YFFN------K---ATIKSL-PQGAIVVNTAR 239 (320)
T ss_dssp EEECCCC--CTT-TT-TCBS------H---HHHTTS-CTTEEEEECSC
T ss_pred EEEeccC--chH-HH-hhcC------H---HHHhhC-CCCcEEEECCC
Confidence 9997521 111 11 1221 1 123333 68899888875
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.15 Score=46.09 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+.++|.|+||+|.||.+++..|+..|.
T Consensus 27 ~~k~vlVTGas~gIG~aia~~l~~~G~ 53 (260)
T 3un1_A 27 QQKVVVITGASQGIGAGLVRAYRDRNY 53 (260)
T ss_dssp TCCEEEESSCSSHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 346799999999999999999998875
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.2 Score=44.88 Aligned_cols=110 Identities=15% Similarity=0.021 Sum_probs=59.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY------ 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~------ 167 (337)
+++.|+||+|.+|.+++..|+..+.- -.|.+ .+++.+.++....++.. ++.. ..| +.
T Consensus 3 k~~lVTGas~GIG~aia~~l~~~g~~---~~v~~----~~r~~~~~~~~~~~~~~-------~~~~~~~Dv~~~~~v~~~ 68 (254)
T 3kzv_A 3 KVILVTGVSRGIGKSIVDVLFSLDKD---TVVYG----VARSEAPLKKLKEKYGD-------RFFYVVGDITEDSVLKQL 68 (254)
T ss_dssp CEEEECSTTSHHHHHHHHHHHHHCSS---CEEEE----EESCHHHHHHHHHHHGG-------GEEEEESCTTSHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHhcCCC---eEEEE----ecCCHHHHHHHHHHhCC-------ceEEEECCCCCHHHHHHH
Confidence 47889999999999999999886521 01332 34555555544333321 1111 111 11
Q ss_pred -----cccCCCcEEEEecccCC--CCC--Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 -----ELFEDAEWALLIGAKPR--GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 -----eal~dADvVIitag~pr--k~g--~~R~---dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|... .+- .+.. ..+..|. .+.+...+.+.+. . +.||+++-
T Consensus 69 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~--~-g~iv~isS 137 (254)
T 3kzv_A 69 VNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKT--N-GNVVFVSS 137 (254)
T ss_dssp HHHHHHHHSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--T-CEEEEECC
T ss_pred HHHHHHhcCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--C-CeEEEEcC
Confidence 12337899999988632 221 1211 2344453 3455555666664 2 56677764
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.37 Score=44.77 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.||.+++..|+..|.
T Consensus 28 k~vlVTGas~GIG~aia~~la~~G~ 52 (322)
T 3qlj_A 28 RVVIVTGAGGGIGRAHALAFAAEGA 52 (322)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC
Confidence 5788999999999999999999875
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=0.17 Score=46.49 Aligned_cols=115 Identities=14% Similarity=0.093 Sum_probs=60.7
Q ss_pred CCEEEEEcCCC--chHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecC--cc----
Q 019713 96 MVNIAVSGAAG--MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PY---- 167 (337)
Q Consensus 96 ~~KI~IIGAaG--~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~--~~---- 167 (337)
.++|.|+||+| .+|.+++..|+..|. .|.+. + ++.+..+.. .++.... .. ...+..| +.
T Consensus 30 ~k~vlVTGasg~~GIG~~ia~~la~~G~-----~V~~~--~--r~~~~~~~~-~~~~~~~-~~--~~~~~~Dv~d~~~v~ 96 (296)
T 3k31_A 30 GKKGVIIGVANDKSLAWGIAKAVCAQGA-----EVALT--Y--LSETFKKRV-DPLAESL-GV--KLTVPCDVSDAESVD 96 (296)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTC-----EEEEE--E--SSGGGHHHH-HHHHHHH-TC--CEEEECCTTCHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHCCC-----EEEEE--e--CChHHHHHH-HHHHHhc-CC--eEEEEcCCCCHHHHH
Confidence 35799999876 999999999999875 25443 2 222222211 1111111 10 0111111 11
Q ss_pred -------cccCCCcEEEEecccCC-----CC--CCch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 -------ELFEDAEWALLIGAKPR-----GP--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 -------eal~dADvVIitag~pr-----k~--g~~R---~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|... .+ ..+. ...+..|..-...+.+.+..+-...+.||+++-
T Consensus 97 ~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS 169 (296)
T 3k31_A 97 NMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY 169 (296)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence 12246799999988643 11 1121 234566655555556655554334567777764
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.063 Score=49.91 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=40.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC--
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-- 171 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~-- 171 (337)
++++||+|||+ |.+|..++..|...+-+ .++ .+. |++.++++..+. .+...++..+.++
T Consensus 8 ~~~~~igiIG~-G~~g~~~~~~l~~~~~~----~~v-~v~--d~~~~~~~~~~~-----------~~~~~~~~~~~l~~~ 68 (315)
T 3c1a_A 8 NSPVRLALIGA-GRWGKNYIRTIAGLPGA----ALV-RLA--SSNPDNLALVPP-----------GCVIESDWRSVVSAP 68 (315)
T ss_dssp -CCEEEEEEEC-TTTTTTHHHHHHHCTTE----EEE-EEE--ESCHHHHTTCCT-----------TCEEESSTHHHHTCT
T ss_pred CCcceEEEECC-cHHHHHHHHHHHhCCCc----EEE-EEE--eCCHHHHHHHHh-----------hCcccCCHHHHhhCC
Confidence 45689999995 99999999888764311 121 122 444444432111 1234444445564
Q ss_pred CCcEEEEec
Q 019713 172 DAEWALLIG 180 (337)
Q Consensus 172 dADvVIita 180 (337)
++|+|+++.
T Consensus 69 ~~D~V~i~t 77 (315)
T 3c1a_A 69 EVEAVIIAT 77 (315)
T ss_dssp TCCEEEEES
T ss_pred CCCEEEEeC
Confidence 799999874
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.71 Score=42.01 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.||.+++..|+..|.
T Consensus 9 ~k~vlVTGas~GIG~aia~~l~~~G~ 34 (285)
T 3sc4_A 9 GKTMFISGGSRGIGLAIAKRVAADGA 34 (285)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHTTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 46899999999999999999998875
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=93.13 E-value=0.13 Score=47.85 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec--CcccccCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFED 172 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t--~~~eal~d 172 (337)
+..++.|+|| |.+|.+++..|+..|.- .|.+ .+++.++++..+.++.... + ..++.... +..+.+++
T Consensus 126 ~~k~vlVlGa-GG~g~aia~~L~~~G~~----~v~i----~~R~~~~a~~la~~~~~~~-~-~~~i~~~~~~~l~~~l~~ 194 (283)
T 3jyo_A 126 KLDSVVQVGA-GGVGNAVAYALVTHGVQ----KLQV----ADLDTSRAQALADVINNAV-G-REAVVGVDARGIEDVIAA 194 (283)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCS----EEEE----ECSSHHHHHHHHHHHHHHH-T-SCCEEEECSTTHHHHHHH
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCC----EEEE----EECCHHHHHHHHHHHHhhc-C-CceEEEcCHHHHHHHHhc
Confidence 3468999996 99999999999987752 2544 3566777777666665432 1 11333332 33466789
Q ss_pred CcEEEEec
Q 019713 173 AEWALLIG 180 (337)
Q Consensus 173 ADvVIita 180 (337)
+|+||.+-
T Consensus 195 ~DiVInaT 202 (283)
T 3jyo_A 195 ADGVVNAT 202 (283)
T ss_dssp SSEEEECS
T ss_pred CCEEEECC
Confidence 99999864
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.024 Score=56.39 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=42.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec--C----ccc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N----PYE 168 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t--~----~~e 168 (337)
..|||.|+|| |.+|+++|..|...+. .+.+ +|.++++++....++ | ..+..+. + ..+
T Consensus 2 ~~M~iiI~G~-G~vG~~la~~L~~~~~-----~v~v----Id~d~~~~~~~~~~~-~------~~~i~Gd~~~~~~L~~A 64 (461)
T 4g65_A 2 NAMKIIILGA-GQVGGTLAENLVGENN-----DITI----VDKDGDRLRELQDKY-D------LRVVNGHASHPDVLHEA 64 (461)
T ss_dssp CCEEEEEECC-SHHHHHHHHHTCSTTE-----EEEE----EESCHHHHHHHHHHS-S------CEEEESCTTCHHHHHHH
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHCCC-----CEEE----EECCHHHHHHHHHhc-C------cEEEEEcCCCHHHHHhc
Confidence 3589999995 9999999999876553 3554 466666665432211 1 1122221 1 124
Q ss_pred ccCCCcEEEEe
Q 019713 169 LFEDAEWALLI 179 (337)
Q Consensus 169 al~dADvVIit 179 (337)
.+++||.+|.+
T Consensus 65 gi~~ad~~ia~ 75 (461)
T 4g65_A 65 GAQDADMLVAV 75 (461)
T ss_dssp TTTTCSEEEEC
T ss_pred CCCcCCEEEEE
Confidence 57899988764
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=93.10 E-value=0.16 Score=45.45 Aligned_cols=26 Identities=15% Similarity=-0.038 Sum_probs=22.9
Q ss_pred CCEEEEEcCC--CchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAA--GMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAa--G~VG~~la~~L~~~~l 121 (337)
.++|.|+||+ |.+|.+++..|+..|.
T Consensus 20 ~k~vlITGas~~~giG~~~a~~l~~~G~ 47 (267)
T 3gdg_A 20 GKVVVVTGASGPKGMGIEAARGCAEMGA 47 (267)
T ss_dssp TCEEEETTCCSSSSHHHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHCCC
Confidence 4689999998 7999999999998875
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.16 Score=47.47 Aligned_cols=66 Identities=15% Similarity=0.076 Sum_probs=40.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEE-eccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC--C
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALK-LLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--D 172 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~-L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~--d 172 (337)
++||+|||+ |.+|...+..|...+- +.+. +. |++.++++..+... . +. .++..+.++ +
T Consensus 3 ~~~vgiiG~-G~~g~~~~~~l~~~~~------~~l~av~--d~~~~~~~~~~~~~-----~----~~-~~~~~~~l~~~~ 63 (331)
T 4hkt_A 3 TVRFGLLGA-GRIGKVHAKAVSGNAD------ARLVAVA--DAFPAAAEAIAGAY-----G----CE-VRTIDAIEAAAD 63 (331)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCTT------EEEEEEE--CSSHHHHHHHHHHT-----T----CE-ECCHHHHHHCTT
T ss_pred ceEEEEECC-CHHHHHHHHHHhhCCC------cEEEEEE--CCCHHHHHHHHHHh-----C----CC-cCCHHHHhcCCC
Confidence 579999995 9999999988876432 2222 33 45555555433211 1 22 344445555 7
Q ss_pred CcEEEEec
Q 019713 173 AEWALLIG 180 (337)
Q Consensus 173 ADvVIita 180 (337)
+|+|+++.
T Consensus 64 ~D~V~i~t 71 (331)
T 4hkt_A 64 IDAVVICT 71 (331)
T ss_dssp CCEEEECS
T ss_pred CCEEEEeC
Confidence 99998864
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=93.00 E-value=0.21 Score=45.41 Aligned_cols=76 Identities=13% Similarity=0.049 Sum_probs=46.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc-----------------hhhHHHhHHHhHhhhccCCcc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-----------------SLQALEGVAMELEDSLFPLLR 158 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~-----------------~~~~l~g~a~DL~d~~~~~~~ 158 (337)
..||.|+|+ |.+|+.++..|+..|+- .+. ++|.|. ...+++..+..+.+.. |. .
T Consensus 28 ~~~VlvvG~-GglG~~va~~La~~Gvg----~i~--lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~-~ 98 (251)
T 1zud_1 28 DSQVLIIGL-GGLGTPAALYLAGAGVG----TLV--LADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN-PD-I 98 (251)
T ss_dssp TCEEEEECC-STTHHHHHHHHHHTTCS----EEE--EECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC-TT-S
T ss_pred cCcEEEEcc-CHHHHHHHHHHHHcCCC----eEE--EEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC-CC-C
Confidence 369999995 99999999999999872 244 444442 1145555555455432 21 2
Q ss_pred cEEEecC------cccccCCCcEEEEec
Q 019713 159 EVKIGIN------PYELFEDAEWALLIG 180 (337)
Q Consensus 159 ~v~i~t~------~~eal~dADvVIita 180 (337)
++..... ..+.++++|+||.+.
T Consensus 99 ~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 126 (251)
T 1zud_1 99 QLTALQQRLTGEALKDAVARADVVLDCT 126 (251)
T ss_dssp EEEEECSCCCHHHHHHHHHHCSEEEECC
T ss_pred EEEEEeccCCHHHHHHHHhcCCEEEECC
Confidence 3333221 123467899999764
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=92.99 E-value=0.084 Score=48.23 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhH
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV 145 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~ 145 (337)
.+++.|+||+|.||.+++..|+..|. .|.+. +++.+.++..
T Consensus 5 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~~----~r~~~~~~~~ 45 (281)
T 3zv4_A 5 GEVALITGGASGLGRALVDRFVAEGA-----RVAVL----DKSAERLREL 45 (281)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-----EEEEE----eCCHHHHHHH
Confidence 35789999999999999999999875 25442 4455555443
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.18 Score=48.48 Aligned_cols=92 Identities=12% Similarity=0.060 Sum_probs=53.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|+||| .|.||..+|..+..-|. .|.. + |++.... .+ .+. .+....+..+.+++||+|
T Consensus 161 ~tvGIIG-lG~IG~~vA~~l~~~G~-----~V~~--~--d~~~~~~--~~---~~~------g~~~~~~l~ell~~aDiV 219 (352)
T 3gg9_A 161 QTLGIFG-YGKIGQLVAGYGRAFGM-----NVLV--W--GRENSKE--RA---RAD------GFAVAESKDALFEQSDVL 219 (352)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--E--CSHHHHH--HH---HHT------TCEECSSHHHHHHHCSEE
T ss_pred CEEEEEe-ECHHHHHHHHHHHhCCC-----EEEE--E--CCCCCHH--HH---Hhc------CceEeCCHHHHHhhCCEE
Confidence 5999999 59999999999877554 2332 3 3332211 11 111 122223456788999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+++... .+ .+| .++ |. +.+... +|++++|+++.
T Consensus 220 ~l~~Pl--t~-~t~-~li--~~-------~~l~~m-k~gailIN~aR 252 (352)
T 3gg9_A 220 SVHLRL--ND-ETR-SII--TV-------ADLTRM-KPTALFVNTSR 252 (352)
T ss_dssp EECCCC--ST-TTT-TCB--CH-------HHHTTS-CTTCEEEECSC
T ss_pred EEeccC--cH-HHH-Hhh--CH-------HHHhhC-CCCcEEEECCC
Confidence 987521 11 111 111 11 123443 68999999984
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=92.96 E-value=0.1 Score=48.29 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=40.8
Q ss_pred CCCEEEEEcCCCchHHH-HHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANH-LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~-la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
+++||+|||+ |.+|.. ++..|...+-+ .+. .+. |++.++++..+.+.. . . .+++..+.++++
T Consensus 5 ~~~~igiIG~-G~~g~~~~~~~l~~~~~~----~l~-av~--d~~~~~~~~~a~~~~-----~--~--~~~~~~~ll~~~ 67 (308)
T 3uuw_A 5 KNIKMGMIGL-GSIAQKAYLPILTKSERF----EFV-GAF--TPNKVKREKICSDYR-----I--M--PFDSIESLAKKC 67 (308)
T ss_dssp CCCEEEEECC-SHHHHHHTHHHHTSCSSS----EEE-EEE--CSCHHHHHHHHHHHT-----C--C--BCSCHHHHHTTC
T ss_pred ccCcEEEEec-CHHHHHHHHHHHHhCCCe----EEE-EEE--CCCHHHHHHHHHHcC-----C--C--CcCCHHHHHhcC
Confidence 4579999995 999995 77777543211 122 123 455666655433221 1 1 134445666799
Q ss_pred cEEEEec
Q 019713 174 EWALLIG 180 (337)
Q Consensus 174 DvVIita 180 (337)
|+|+++.
T Consensus 68 D~V~i~t 74 (308)
T 3uuw_A 68 DCIFLHS 74 (308)
T ss_dssp SEEEECC
T ss_pred CEEEEeC
Confidence 9999864
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=92.94 E-value=0.37 Score=44.01 Aligned_cols=71 Identities=13% Similarity=0.201 Sum_probs=46.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCccccc--CCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF--EDA 173 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal--~dA 173 (337)
.++|.|+|| |.+|..++..|+..| . .|.+ .+++.++++..+.++... . .+... +.+++ .++
T Consensus 119 ~k~vlViGa-Gg~g~a~a~~L~~~G-~----~V~v----~~R~~~~~~~la~~~~~~--~---~~~~~--~~~~~~~~~~ 181 (271)
T 1nyt_A 119 GLRILLIGA-GGASRGVLLPLLSLD-C----AVTI----TNRTVSRAEELAKLFAHT--G---SIQAL--SMDELEGHEF 181 (271)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT-C----EEEE----ECSSHHHHHHHHHHTGGG--S---SEEEC--CSGGGTTCCC
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcC-C----EEEE----EECCHHHHHHHHHHhhcc--C---CeeEe--cHHHhccCCC
Confidence 468999996 999999999999877 2 2554 255666666555444321 1 22222 22344 489
Q ss_pred cEEEEecccC
Q 019713 174 EWALLIGAKP 183 (337)
Q Consensus 174 DvVIitag~p 183 (337)
|+||.+.+.+
T Consensus 182 DivVn~t~~~ 191 (271)
T 1nyt_A 182 DLIINATSSG 191 (271)
T ss_dssp SEEEECCSCG
T ss_pred CEEEECCCCC
Confidence 9999987654
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=0.49 Score=42.12 Aligned_cols=45 Identities=24% Similarity=0.197 Sum_probs=31.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHH---cCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAA---GEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~---~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
+++.|+||+|.+|.+++..|+. .|. .|.+ .+++.+.++..+.++.
T Consensus 7 k~~lVTGas~gIG~~ia~~l~~~~~~G~-----~V~~----~~r~~~~~~~~~~~l~ 54 (259)
T 1oaa_A 7 AVCVLTGASRGFGRALAPQLARLLSPGS-----VMLV----SARSESMLRQLKEELG 54 (259)
T ss_dssp EEEEESSCSSHHHHHHHHHHHTTBCTTC-----EEEE----EESCHHHHHHHHHHHH
T ss_pred cEEEEeCCCChHHHHHHHHHHHhhcCCC-----eEEE----EeCCHHHHHHHHHHHH
Confidence 4688999999999999999997 554 2444 2445555555544454
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=92.91 E-value=0.29 Score=44.78 Aligned_cols=72 Identities=13% Similarity=0.174 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCccccc-C-C
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-E-D 172 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal-~-d 172 (337)
+.++|.|+|| |.+|..++..|+..| . .|.+ .+++.++++..+.++... . .+... +.+++ + +
T Consensus 118 ~~~~vlvlGa-Gg~g~a~a~~L~~~G-~----~v~v----~~R~~~~a~~l~~~~~~~--~---~~~~~--~~~~~~~~~ 180 (272)
T 1p77_A 118 PNQHVLILGA-GGATKGVLLPLLQAQ-Q----NIVL----ANRTFSKTKELAERFQPY--G---NIQAV--SMDSIPLQT 180 (272)
T ss_dssp TTCEEEEECC-SHHHHTTHHHHHHTT-C----EEEE----EESSHHHHHHHHHHHGGG--S---CEEEE--EGGGCCCSC
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC-C----EEEE----EECCHHHHHHHHHHcccc--C---CeEEe--eHHHhccCC
Confidence 3468999996 999999999999877 2 2554 356666766665544321 1 22222 23445 3 8
Q ss_pred CcEEEEecccC
Q 019713 173 AEWALLIGAKP 183 (337)
Q Consensus 173 ADvVIitag~p 183 (337)
+|+||.+.+.+
T Consensus 181 ~DivIn~t~~~ 191 (272)
T 1p77_A 181 YDLVINATSAG 191 (272)
T ss_dssp CSEEEECCCC-
T ss_pred CCEEEECCCCC
Confidence 99999987654
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.21 Score=47.87 Aligned_cols=98 Identities=10% Similarity=0.124 Sum_probs=54.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.++|+||| .|.||..+|..|...|. .|. .+| ++.+. ..+.++ . +....+..+.+++||+
T Consensus 168 g~tvGIIG-~G~IG~~vA~~l~~~G~-----~V~--~~d--~~~~~--~~~~~~-----g----~~~~~~l~ell~~aDv 226 (347)
T 1mx3_A 168 GETLGIIG-LGRVGQAVALRAKAFGF-----NVL--FYD--PYLSD--GVERAL-----G----LQRVSTLQDLLFHSDC 226 (347)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC-----EEE--EEC--TTSCT--THHHHH-----T----CEECSSHHHHHHHCSE
T ss_pred CCEEEEEe-ECHHHHHHHHHHHHCCC-----EEE--EEC--CCcch--hhHhhc-----C----CeecCCHHHHHhcCCE
Confidence 36899999 59999999999876553 233 233 32221 111111 1 1122234577889999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--CchhH
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTN 228 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN--Pvd~~ 228 (337)
|+++.... + .++ .++. + +.+... +|++++|+++. ++|.-
T Consensus 227 V~l~~P~t--~-~t~-~li~------~---~~l~~m-k~gailIN~arg~~vd~~ 267 (347)
T 1mx3_A 227 VTLHCGLN--E-HNH-HLIN------D---FTVKQM-RQGAFLVNTARGGLVDEK 267 (347)
T ss_dssp EEECCCCC--T-TCT-TSBS------H---HHHTTS-CTTEEEEECSCTTSBCHH
T ss_pred EEEcCCCC--H-HHH-HHhH------H---HHHhcC-CCCCEEEECCCChHHhHH
Confidence 99875221 1 111 1211 1 223333 68899999885 45543
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.14 Score=47.54 Aligned_cols=63 Identities=19% Similarity=0.100 Sum_probs=43.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..||.|+|| |.+|.+++..|+..| . .|.+ .+++.++++..+ ++. +... .++++.++|+
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G-~----~v~V----~nRt~~ka~~la-~~~---------~~~~--~~~~l~~~Di 175 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQG-L----QVSV----LNRSSRGLDFFQ-RLG---------CDCF--MEPPKSAFDL 175 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-C----EEEE----ECSSCTTHHHHH-HHT---------CEEE--SSCCSSCCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-C----EEEE----EeCCHHHHHHHH-HCC---------CeEe--cHHHhccCCE
Confidence 469999995 999999999999877 2 2554 356666766655 443 1111 2344569999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
||.+-
T Consensus 176 VInaT 180 (269)
T 3phh_A 176 IINAT 180 (269)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 99864
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=92.84 E-value=0.36 Score=46.18 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||.|||+ |.+|+.++..|+..|+
T Consensus 118 ~~~VlvvG~-GglGs~va~~La~aGv 142 (353)
T 3h5n_A 118 NAKVVILGC-GGIGNHVSVILATSGI 142 (353)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTC
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCC
Confidence 369999995 9999999999999987
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=92.83 E-value=0.27 Score=45.24 Aligned_cols=78 Identities=23% Similarity=0.249 Sum_probs=49.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhcc-CCcccEEEecCcccccCCCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-PLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~-~~~~~v~i~t~~~eal~dAD 174 (337)
.++|.|+|| |.+|.+++..|+..| + |.+ .+++.++++..+.++..... .....+.+. +..+.+.++|
T Consensus 128 ~k~vlV~Ga-GgiG~aia~~L~~~G---~---V~v----~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D 195 (287)
T 1nvt_A 128 DKNIVIYGA-GGAARAVAFELAKDN---N---III----ANRTVEKAEALAKEIAEKLNKKFGEEVKFS-GLDVDLDGVD 195 (287)
T ss_dssp SCEEEEECC-SHHHHHHHHHHTSSS---E---EEE----ECSSHHHHHHHHHHHHHHHTCCHHHHEEEE-CTTCCCTTCC
T ss_pred CCEEEEECc-hHHHHHHHHHHHHCC---C---EEE----EECCHHHHHHHHHHHhhhcccccceeEEEe-eHHHhhCCCC
Confidence 468999996 899999999998765 2 554 24566666666555543110 000123333 2357789999
Q ss_pred EEEEecccCCC
Q 019713 175 WALLIGAKPRG 185 (337)
Q Consensus 175 vVIitag~prk 185 (337)
+||.++|.+..
T Consensus 196 ilVn~ag~~~~ 206 (287)
T 1nvt_A 196 IIINATPIGMY 206 (287)
T ss_dssp EEEECSCTTCT
T ss_pred EEEECCCCCCC
Confidence 99999876543
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=92.82 E-value=0.35 Score=46.34 Aligned_cols=100 Identities=19% Similarity=0.187 Sum_probs=56.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
-++|+||| .|.||..+|..|..-|. .|. .+ |++....+ .+.++ . +....+..+.+++||+
T Consensus 164 gktvGIIG-~G~IG~~vA~~l~~~G~-----~V~--~~--dr~~~~~~-~~~~~---g------~~~~~~l~ell~~aDv 223 (351)
T 3jtm_A 164 GKTIGTVG-AGRIGKLLLQRLKPFGC-----NLL--YH--DRLQMAPE-LEKET---G------AKFVEDLNEMLPKCDV 223 (351)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHGGGCC-----EEE--EE--CSSCCCHH-HHHHH---C------CEECSCHHHHGGGCSE
T ss_pred CCEEeEEE-eCHHHHHHHHHHHHCCC-----EEE--Ee--CCCccCHH-HHHhC---C------CeEcCCHHHHHhcCCE
Confidence 36999999 59999999999876554 233 23 33321211 11111 1 1222345678999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--CchhHH
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNA 229 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN--Pvd~~t 229 (337)
|+++... .+ .+| .++ | + +.+... .|++++|+++. ++|.-+
T Consensus 224 V~l~~Pl--t~-~t~-~li--~----~---~~l~~m-k~gailIN~aRG~~vde~a 265 (351)
T 3jtm_A 224 IVINMPL--TE-KTR-GMF--N----K---ELIGKL-KKGVLIVNNARGAIMERQA 265 (351)
T ss_dssp EEECSCC--CT-TTT-TCB--S----H---HHHHHS-CTTEEEEECSCGGGBCHHH
T ss_pred EEECCCC--CH-HHH-Hhh--c----H---HHHhcC-CCCCEEEECcCchhhCHHH
Confidence 9997521 11 111 122 1 1 123333 68999999985 345433
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.82 E-value=0.19 Score=44.84 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=19.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
+||+|||+ |.||..++..|...+
T Consensus 1 m~vgiIG~-G~mG~~~~~~l~~~g 23 (236)
T 2dc1_A 1 MLVGLIGY-GAIGKFLAEWLERNG 23 (236)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT
T ss_pred CEEEEECC-CHHHHHHHHHHhcCC
Confidence 58999995 999999999887544
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=92.76 E-value=0.31 Score=46.23 Aligned_cols=76 Identities=13% Similarity=0.033 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch--hhHHHhHHHhHhhhccCCcccEEEecCcccccCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~--~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d 172 (337)
+-.||+++|-.++|..+++..++.-|. .+. +..-+.- .+.....+.+... ....+++++.+..++++|
T Consensus 154 ~gl~va~vGD~~rva~Sl~~~~~~~g~-----~v~--~~~P~~~~~~~~~~~~~~~~a~---~~g~~~~~~~d~~eav~~ 223 (315)
T 1pvv_A 154 KGVKVVYVGDGNNVAHSLMIAGTKLGA-----DVV--VATPEGYEPDEKVIKWAEQNAA---ESGGSFELLHDPVKAVKD 223 (315)
T ss_dssp TTCEEEEESCCCHHHHHHHHHHHHTTC-----EEE--EECCTTCCCCHHHHHHHHHHHH---HHTCEEEEESCHHHHTTT
T ss_pred CCcEEEEECCCcchHHHHHHHHHHCCC-----EEE--EECCccccCCHHHHHHHHHHHH---HcCCeEEEEeCHHHHhCC
Confidence 347999999668899998888877654 233 3322111 0111111111111 112367788888899999
Q ss_pred CcEEEEec
Q 019713 173 AEWALLIG 180 (337)
Q Consensus 173 ADvVIita 180 (337)
||+|....
T Consensus 224 aDvvy~~~ 231 (315)
T 1pvv_A 224 ADVIYTDV 231 (315)
T ss_dssp CSEEEECC
T ss_pred CCEEEEcc
Confidence 99998854
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.14 Score=48.07 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=41.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEE-eccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC--
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALK-LLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-- 171 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~-L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~-- 171 (337)
+++||+|||+ |.+|..++..|...+- +.+. +. |++.++++..+... ... ..+++..+.+.
T Consensus 4 ~~~~igiiG~-G~~g~~~~~~l~~~~~------~~l~av~--d~~~~~~~~~~~~~-----~~~---~~~~~~~~ll~~~ 66 (330)
T 3e9m_A 4 DKIRYGIMST-AQIVPRFVAGLRESAQ------AEVRGIA--SRRLENAQKMAKEL-----AIP---VAYGSYEELCKDE 66 (330)
T ss_dssp CCEEEEECSC-CTTHHHHHHHHHHSSS------EEEEEEB--CSSSHHHHHHHHHT-----TCC---CCBSSHHHHHHCT
T ss_pred CeEEEEEECc-hHHHHHHHHHHHhCCC------cEEEEEE--eCCHHHHHHHHHHc-----CCC---ceeCCHHHHhcCC
Confidence 4579999995 9999999988876432 2222 33 44555555433221 110 12334344454
Q ss_pred CCcEEEEec
Q 019713 172 DAEWALLIG 180 (337)
Q Consensus 172 dADvVIita 180 (337)
++|+|+++.
T Consensus 67 ~~D~V~i~t 75 (330)
T 3e9m_A 67 TIDIIYIPT 75 (330)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEEcC
Confidence 799998864
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.22 Score=46.56 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=41.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHH-HcCCCCCCCceEE-EeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIAL-KLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~-~~~l~~e~~~v~L-~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~ 171 (337)
.+++||+|||+ |.+|...+..|. ...- +.+ .+. |++.++++..+.++ . .. ...++..+.++
T Consensus 6 ~~~~~v~iiG~-G~ig~~~~~~l~~~~~~------~~~vav~--d~~~~~~~~~a~~~-----g--~~-~~~~~~~~~l~ 68 (346)
T 3cea_A 6 RKPLRAAIIGL-GRLGERHARHLVNKIQG------VKLVAAC--ALDSNQLEWAKNEL-----G--VE-TTYTNYKDMID 68 (346)
T ss_dssp CCCEEEEEECC-STTHHHHHHHHHHTCSS------EEEEEEE--CSCHHHHHHHHHTT-----C--CS-EEESCHHHHHT
T ss_pred CCcceEEEEcC-CHHHHHHHHHHHhcCCC------cEEEEEe--cCCHHHHHHHHHHh-----C--CC-cccCCHHHHhc
Confidence 35689999995 999999888876 3221 222 222 45555655433211 1 11 23344445555
Q ss_pred --CCcEEEEec
Q 019713 172 --DAEWALLIG 180 (337)
Q Consensus 172 --dADvVIita 180 (337)
++|+|+++.
T Consensus 69 ~~~~D~V~i~t 79 (346)
T 3cea_A 69 TENIDAIFIVA 79 (346)
T ss_dssp TSCCSEEEECS
T ss_pred CCCCCEEEEeC
Confidence 699999874
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.17 Score=47.52 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=41.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHH-HcCCCCCCCceEEE-eccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC-
Q 019713 96 MVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALK-LLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED- 172 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~-~~~l~~e~~~v~L~-L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d- 172 (337)
++||+|||+ |.+|...+..|. ...- +.+. + .|++.++++..+..+ .. ....+++..+.+++
T Consensus 2 ~~rigiIG~-G~~g~~~~~~l~~~~~~------~~l~av--~d~~~~~~~~~~~~~-----g~--~~~~~~~~~~ll~~~ 65 (344)
T 3mz0_A 2 SLRIGVIGT-GAIGKEHINRITNKLSG------AEIVAV--TDVNQEAAQKVVEQY-----QL--NATVYPNDDSLLADE 65 (344)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHTCSS------EEEEEE--ECSSHHHHHHHHHHT-----TC--CCEEESSHHHHHHCT
T ss_pred eEEEEEECc-cHHHHHHHHHHHhhCCC------cEEEEE--EcCCHHHHHHHHHHh-----CC--CCeeeCCHHHHhcCC
Confidence 469999995 999999998887 3221 2222 2 245556655433211 11 13444554555554
Q ss_pred -CcEEEEec
Q 019713 173 -AEWALLIG 180 (337)
Q Consensus 173 -ADvVIita 180 (337)
+|+|+++.
T Consensus 66 ~~D~V~i~t 74 (344)
T 3mz0_A 66 NVDAVLVTS 74 (344)
T ss_dssp TCCEEEECS
T ss_pred CCCEEEECC
Confidence 89999864
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.18 Score=47.29 Aligned_cols=71 Identities=10% Similarity=0.130 Sum_probs=40.5
Q ss_pred ccCCCEEEEEcCCCchHH-HHHHHHHHcCCCCCCCceEEE-eccccchhhHHHhHHHhHhhhccCCcccEEEecCccccc
Q 019713 93 WKKMVNIAVSGAAGMIAN-HLLFKLAAGEVLGPDQPIALK-LLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF 170 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~-~la~~L~~~~l~~e~~~v~L~-L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal 170 (337)
..+|+||+|||+ |.+|. +.+..+...+- +.|+ + .|++.++++..+.++. . ...+++-.+.+
T Consensus 20 ~~~mirigiIG~-G~ig~~~~~~~~~~~~~------~~lvav--~d~~~~~a~~~a~~~g-----~---~~~y~d~~ell 82 (350)
T 4had_A 20 FQSMLRFGIIST-AKIGRDNVVPAIQDAEN------CVVTAI--ASRDLTRAREMADRFS-----V---PHAFGSYEEML 82 (350)
T ss_dssp --CCEEEEEESC-CHHHHHTHHHHHHHCSS------EEEEEE--ECSSHHHHHHHHHHHT-----C---SEEESSHHHHH
T ss_pred ccCccEEEEEcC-hHHHHHHHHHHHHhCCC------eEEEEE--ECCCHHHHHHHHHHcC-----C---CeeeCCHHHHh
Confidence 356789999995 99996 46777765432 2222 2 3556667665543221 1 12344433444
Q ss_pred --CCCcEEEEec
Q 019713 171 --EDAEWALLIG 180 (337)
Q Consensus 171 --~dADvVIita 180 (337)
.+.|+|+++-
T Consensus 83 ~~~~iDaV~I~t 94 (350)
T 4had_A 83 ASDVIDAVYIPL 94 (350)
T ss_dssp HCSSCSEEEECS
T ss_pred cCCCCCEEEEeC
Confidence 4689998863
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=92.70 E-value=0.17 Score=46.88 Aligned_cols=67 Identities=18% Similarity=0.162 Sum_probs=37.8
Q ss_pred CCCEEEEEcCCCchHHH-HHHHHHHcCCCCCCCceEEE-eccccchhhHHHhHHHhHhhhccCCcccEEEecCccccc-C
Q 019713 95 KMVNIAVSGAAGMIANH-LLFKLAAGEVLGPDQPIALK-LLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-E 171 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~-la~~L~~~~l~~e~~~v~L~-L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal-~ 171 (337)
+++||+|||+ |.+|.. ++..|....- +.+. +. |++.++++..+... .. . . .++++++ .
T Consensus 4 ~~~~vgiiG~-G~~g~~~~~~~l~~~~~------~~lvav~--d~~~~~~~~~~~~~-----g~--~--~-~~~~~~l~~ 64 (319)
T 1tlt_A 4 KKLRIGVVGL-GGIAQKAWLPVLAAASD------WTLQGAW--SPTRAKALPICESW-----RI--P--Y-ADSLSSLAA 64 (319)
T ss_dssp -CEEEEEECC-STHHHHTHHHHHHSCSS------EEEEEEE--CSSCTTHHHHHHHH-----TC--C--B-CSSHHHHHT
T ss_pred CcceEEEECC-CHHHHHHHHHHHHhCCC------eEEEEEE--CCCHHHHHHHHHHc-----CC--C--c-cCcHHHhhc
Confidence 4579999995 999986 7777764321 2222 33 44445554332211 11 1 2 2344455 6
Q ss_pred CCcEEEEec
Q 019713 172 DAEWALLIG 180 (337)
Q Consensus 172 dADvVIita 180 (337)
++|+|+++.
T Consensus 65 ~~D~V~i~t 73 (319)
T 1tlt_A 65 SCDAVFVHS 73 (319)
T ss_dssp TCSEEEECS
T ss_pred CCCEEEEeC
Confidence 899999864
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=92.69 E-value=0.059 Score=48.72 Aligned_cols=25 Identities=28% Similarity=0.194 Sum_probs=22.4
Q ss_pred CEEEEEcC--CCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGA--AGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGA--aG~VG~~la~~L~~~~l 121 (337)
++|.|+|| +|.+|.+++..|+..|.
T Consensus 8 k~vlVTGa~~s~gIG~aia~~l~~~G~ 34 (269)
T 2h7i_A 8 KRILVSGIITDSSIAFHIARVAQEQGA 34 (269)
T ss_dssp CEEEECCCSSTTSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCchHHHHHHHHHHCCC
Confidence 57999998 89999999999998875
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.24 Score=45.08 Aligned_cols=113 Identities=9% Similarity=0.042 Sum_probs=61.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-------ecCcccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-------GINPYEL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-------~t~~~ea 169 (337)
++|.|+||++-||.+++..|+..|. .|.+. |+++++++..+.+..+.. .+..+++- ...-.+.
T Consensus 3 K~vlVTGas~GIG~aia~~la~~Ga-----~V~~~----~~~~~~~~~~~~~~~~~~-~~~~Dv~~~~~v~~~v~~~~~~ 72 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEAGD-----KVCFI----DIDEKRSADFAKERPNLF-YFHGDVADPLTLKKFVEYAMEK 72 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHTTCTTEE-EEECCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHhcCCEE-EEEecCCCHHHHHHHHHHHHHH
Confidence 4688999999999999999999886 25543 444555543333222111 00000000 0011345
Q ss_pred cCCCcEEEEecccCCC-C--CCchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeC
Q 019713 170 FEDAEWALLIGAKPRG-P--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 170 l~dADvVIitag~prk-~--g~~R~---dll~~N~~----I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+..-|++|..+|.... + ..+.. ..+..|+. ..+...+.+.+. . +.||+++
T Consensus 73 ~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~--~-G~IInis 132 (247)
T 3ged_A 73 LQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKN--K-GRIINIA 132 (247)
T ss_dssp HSCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--T-CEEEEEC
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc--C-CcEEEEe
Confidence 6789999998876432 2 11222 23445533 455566666653 3 5666665
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 337 | ||||
| d7mdha1 | 175 | c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum ( | 1e-68 | |
| d1y7ta1 | 154 | c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th | 9e-44 | |
| d5mdha1 | 154 | c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s | 3e-42 | |
| d2cmda1 | 145 | c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi | 3e-22 | |
| d7mdha2 | 188 | d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu | 7e-19 | |
| d1mlda1 | 144 | c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s | 2e-18 | |
| d1hyea1 | 145 | c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge | 1e-17 | |
| d1y7ta2 | 173 | d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu | 2e-16 | |
| d1guza1 | 142 | c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium | 3e-16 | |
| d5mdha2 | 179 | d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S | 4e-16 | |
| d1o6za1 | 142 | c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon | 1e-15 | |
| d1b8pa2 | 171 | d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp | 2e-15 | |
| d1ldma2 | 169 | d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi | 2e-11 | |
| d1ojua1 | 142 | c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon | 4e-11 | |
| d2ldxa2 | 172 | d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse | 5e-11 | |
| d1hyha1 | 146 | c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro | 5e-11 | |
| d1a5za1 | 140 | c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto | 1e-10 | |
| d1llda2 | 170 | d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid | 1e-10 | |
| d1i0za2 | 172 | d.162.1.1 (A:161-332) Lactate dehydrogenase {Human | 1e-10 | |
| d1llda1 | 143 | c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac | 1e-10 | |
| d1ldna1 | 148 | c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus | 2e-10 | |
| d1llca2 | 172 | d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto | 2e-10 | |
| d1ldna2 | 168 | d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil | 8e-10 | |
| d1y6ja2 | 169 | d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost | 1e-09 | |
| d1ez4a2 | 171 | d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto | 1e-09 | |
| d1i0za1 | 160 | c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho | 2e-09 | |
| d2cmda2 | 167 | d.162.1.1 (A:146-312) Malate dehydrogenase {Escher | 4e-09 | |
| d1hyha2 | 163 | d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy | 4e-09 | |
| d1a5za2 | 172 | d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm | 5e-09 | |
| d1mlda2 | 169 | d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S | 6e-09 | |
| d1pzga2 | 174 | d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop | 6e-09 | |
| d1uxja2 | 164 | d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro | 7e-09 | |
| d1hyea2 | 168 | d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd | 1e-08 | |
| d1guza2 | 163 | d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro | 1e-08 | |
| d1t2da2 | 165 | d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar | 3e-08 | |
| d1ez4a1 | 146 | c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac | 5e-08 | |
| d2ldxa1 | 159 | c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu | 7e-08 | |
| d1uxja1 | 142 | c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex | 8e-08 | |
| d1o6za2 | 161 | d.162.1.1 (A:163-330) Malate dehydrogenase {Archae | 6e-07 | |
| d1y6ja1 | 142 | c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi | 4e-06 | |
| d1pzga1 | 154 | c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas | 2e-04 | |
| d1u8xx1 | 167 | c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase | 8e-04 | |
| d1up7a1 | 162 | c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther | 0.003 |
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Score = 210 bits (535), Expect = 1e-68
Identities = 154/175 (88%), Positives = 167/175 (95%)
Query: 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132
DC+GVFC TYDLKAE++TKSWKK+VNIAVSGAAGMI+NHLLFKLA+GEV G DQPIALKL
Sbjct: 1 DCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKL 60
Query: 133 LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAG 192
LGSERS QALEGVAMELEDSL+PLLREV IGI+PYE+FED +WALLIGAKPRGPGMERA
Sbjct: 61 LGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAA 120
Query: 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHAL 247
LLDINGQIFA+QGKALNAVAS+NVKV+VVGNPCNTNALICLKNAP IPAKNFHAL
Sbjct: 121 LLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHAL 175
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 146 bits (368), Expect = 9e-44
Identities = 87/153 (56%), Positives = 113/153 (73%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LL ++++ALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHA 246
++VKV+VVGNP NTNALI KNAP + +NF A
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTA 154
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 142 bits (358), Expect = 3e-42
Identities = 73/151 (48%), Positives = 94/151 (62%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 63
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L++V F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++V
Sbjct: 64 LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSV 123
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHAL 247
KVIVVGNP NTN L K+APSIP +NF L
Sbjct: 124 KVIVVGNPANTNCLTASKSAPSIPKENFSCL 154
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 88.9 bits (220), Expect = 3e-22
Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 16/156 (10%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+AV GAAG I L L G + L L GVA++L +
Sbjct: 3 VAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIA---PVTPGVAVDLSHIPTAVKI 55
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
+ G + E A+ L+ R PGM+R+ L ++N I + + A +
Sbjct: 56 KGFSGEDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQV-AKTCPKACI 114
Query: 219 IVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENR 254
++ NP NT I A+ D+N+
Sbjct: 115 GIITNPVNTTVAIA--------AEVLKKAGVYDKNK 142
|
| >d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Score = 80.8 bits (199), Expect = 7e-19
Identities = 60/70 (85%), Positives = 65/70 (92%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
TRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+I+G PVKE+IK KWL
Sbjct: 1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWL 60
Query: 308 EEGFTETIQK 317
EE FT T+QK
Sbjct: 61 EEEFTITVQK 70
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 78.5 bits (193), Expect = 2e-18
Identities = 34/157 (21%), Positives = 56/157 (35%), Gaps = 19/157 (12%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+AV GA+G I L L ++ L L + GVA +L
Sbjct: 3 VAVLGASGGIGQPLSLLLKNSPLVS-----RLTLYD----IAHTPGVAADLSHIETRATV 53
Query: 159 EVKIGI-NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
+ +G + + + ++ PR PGM R L + N I A A A +
Sbjct: 54 KGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAAC-AQHCPDAM 112
Query: 218 VIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENR 254
+ ++ NP N+ I A+ F + N+
Sbjct: 113 ICIISNPVNSTIPIT--------AEVFKKHGVYNPNK 141
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 76.0 bits (186), Expect = 1e-17
Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 10/139 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+ + GA+G + + LA + L L+G E S+ LEG+ ++ D+L
Sbjct: 3 VTIIGASGRVGSATALLLAKEPFMKD-----LVLIGREHSINKLEGLREDIYDALAGTRS 57
Query: 159 EVKI---GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
+ I + ++++ ++ PR GM R L N +I + K + + +
Sbjct: 58 DANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--D 115
Query: 216 VKVIVVGNPCNTNALICLK 234
K+ V+ NP + L
Sbjct: 116 TKIFVITNPVDVMTYKALV 134
|
| >d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 73.6 bits (180), Expect = 2e-16
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW 306
+TRLD NRAK QLA K G D++ MT+WGNHS+T PD +A ++G P E++ +
Sbjct: 1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWY 60
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Score = 72.8 bits (178), Expect = 3e-16
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 10/139 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
I V GA G + F+LA + +A +L+ + +G A+++ +S L
Sbjct: 3 ITVIGA-GNVGATTAFRLAE-------KQLARELVLLDVVEGIPQGKALDMYESGPVGLF 54
Query: 159 EVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
+ K+ G N Y +++ ++ PR PGM R LL N I E + S+N
Sbjct: 55 DTKVTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNI-MKHSKNPI 113
Query: 218 VIVVGNPCNTNALICLKNA 236
+IVV NP + + +
Sbjct: 114 IIVVSNPLDIMTHVAWVRS 132
|
| >d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 72.9 bits (178), Expect = 4e-16
Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV----KEIIKD 303
TRLD NRAK Q+ALK GV D V N+ IWGNHS+TQ PD +A++ E +KD
Sbjct: 1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60
Query: 304 HKWLEEGFTETIQK 317
WL+ F T+Q+
Sbjct: 61 DSWLKGEFITTVQQ 74
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Score = 70.8 bits (173), Expect = 1e-15
Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 7/136 (5%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
++V GAAG + + +A ++ + + G A + +
Sbjct: 3 VSVVGAAGTVGAAAGYNIALRDIAD-----EVVFVDIPDKEDDTVGQAADTNHGI-AYDS 56
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
++ YE ++ ++ PR PG R L N I + +L+ +
Sbjct: 57 NTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYIS 115
Query: 219 IVVGNPCNTNALICLK 234
+ NP + +
Sbjct: 116 LTTSNPVDLLNRHLYE 131
|
| >d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Aquaspirillum arcticum [TaxId: 87645]
Score = 71.0 bits (173), Expect = 2e-15
Identities = 28/86 (32%), Positives = 40/86 (46%)
Query: 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLE 308
RLD NRA Q+A K G + + +WGNHS T D+ A+I+G VK++I D W
Sbjct: 2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNR 61
Query: 309 EGFTETIQKVRLVDNFTLILFVMNCI 334
+ F T+ K +
Sbjct: 62 DTFLPTVGKRGAAIIDARGVSSAASA 87
|
| >d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Dogfish (Squalus acanthias) [TaxId: 7797]
Score = 59.5 bits (143), Expect = 2e-11
Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 1/72 (1%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
LD R + + + GV + G H + + + + + + +K
Sbjct: 3 CNLDSARFRYLMGERLGVHSCSCHGW-VIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDK 61
Query: 308 EEGFTETIQKVR 319
++ V
Sbjct: 62 QDWKKLHKDVVD 73
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 58.2 bits (140), Expect = 4e-11
Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 10/137 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+ GA G + + F ++ + + G AM+L + + +
Sbjct: 3 LGFVGA-GRVGSTSAFTCLL-------NLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDK 54
Query: 159 EVK-IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
K +G Y L + +E ++ R PGM R L N I + K + + K
Sbjct: 55 YPKIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKI-VENAPESK 113
Query: 218 VIVVGNPCNTNALICLK 234
++VV NP + I K
Sbjct: 114 ILVVTNPMDVMTYIMWK 130
|
| >d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.3 bits (140), Expect = 5e-11
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 1/80 (1%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
LD R + + K GV + G H + VP + + G+ +K +
Sbjct: 3 CNLDSARFRYLIGEKLGVNPTSCHGW-VLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTD 61
Query: 308 EEGFTETIQKVRLVDNFTLI 327
+ ++V+ +
Sbjct: 62 KNKQHWKNVHKQVVEGGYEV 81
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Score = 57.8 bits (139), Expect = 5e-11
Identities = 21/140 (15%), Positives = 48/140 (34%), Gaps = 13/140 (9%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
I + G G + + L A Q +A + + + ++ ++ +D++ L
Sbjct: 4 IGIIGL-GNVGAAVAHGLIA-------QGVADDYVFIDANEAKVKADQIDFQDAMANLEA 55
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRG----PGMERAGLLDINGQIFAEQGKALNAVASR 214
I IN + DA+ + + P +R L + G +
Sbjct: 56 HGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTN-LKESGF 114
Query: 215 NVKVIVVGNPCNTNALICLK 234
+ ++V+ NP + +
Sbjct: 115 HGVLVVISNPVDVITALFQH 134
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 57.0 bits (137), Expect = 1e-10
Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 10/138 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
I + G G + + F L + A +++ + + EG A++L P R
Sbjct: 3 IGIVGL-GRVGSSTAFALLM-------KGFAREMVLIDVDKKRAEGDALDLIHGT-PFTR 53
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
I Y + ++ ++ P+ PG R LL N ++ E + ++ A + V
Sbjct: 54 RANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP-DSIV 112
Query: 219 IVVGNPCNTNALICLKNA 236
IVV NP + LK +
Sbjct: 113 IVVTNPVDVLTYFFLKES 130
|
| >d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Score = 57.5 bits (138), Expect = 1e-10
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R + +A + GV V I G H ++VP + +A I G+P+ +
Sbjct: 1 TNLDSARLRFLIAQQTGVNVKNVHAY-IAGEHGDSEVPLWESATIGGVPMSDWTPLPGHD 59
Query: 308 EEGFTETIQKVRLVDN 323
+ + + V N
Sbjct: 60 PLDADKREEIHQEVKN 75
|
| >d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Score = 57.5 bits (138), Expect = 1e-10
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
LD R + +A K G+ I G H + V + + G+ ++E+ +
Sbjct: 3 CNLDSARFRYLMAEKLGIHPSSCHGW-ILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTD 61
Query: 308 EEGFTETIQKVRLVDNFTLILFVMNCIVF 336
+ +V++ ++ + +
Sbjct: 62 NDSENWKEVHKMVVESAYEVIKLKGYTNW 90
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Score = 56.5 bits (136), Expect = 1e-10
Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 9/136 (6%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+AV GA G + + L F A + IA +++ + + + +E ++++
Sbjct: 4 LAVIGA-GAVGSTLAFAAAQ-------RGIAREIVLEDIAKERVEAEVLDMQHGSSFYPT 55
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
G + E+ DA+ ++ + PG R L+ I L VA N
Sbjct: 56 VSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAP-NAIY 114
Query: 219 IVVGNPCNTNALICLK 234
+++ NP + + K
Sbjct: 115 MLITNPVDIATHVAQK 130
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 56.2 bits (135), Expect = 2e-10
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 9/136 (6%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+ V GA G + +F L Q IA +++ + + G AM+ +
Sbjct: 9 VVVIGA-GFVGASYVFALMN-------QGIADEIVLIDANESKAIGDAMDFNHGKVFAPK 60
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
V I Y+ DA+ ++ + PG R L+D N IF +++ +
Sbjct: 61 PVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESV-MASGFQGLF 119
Query: 219 IVVGNPCNTNALICLK 234
+V NP + K
Sbjct: 120 LVATNPVDILTYATWK 135
|
| >d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Score = 56.8 bits (136), Expect = 2e-10
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R + +A V V I G H T+ P + +A I G+ + E +K H +
Sbjct: 1 TSLDTARFRQSIAEMVNVDARSVHAY-IMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEI 59
Query: 308 EEGFTETIQKVRLVDNFTLILFVMNC 333
+E + + + +I
Sbjct: 60 KEDKLVKMFEDVRDAAYEIIKLKGAT 85
|
| >d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 54.9 bits (131), Expect = 8e-10
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R + L V V I G H T++P + A I +P++++++
Sbjct: 1 TILDTARFRFLLGEYFSVAPQNVHAY-IIGEHGDTELPVWSQAYIGVMPIRKLVESKGEE 59
Query: 308 EEGFTETIQK 317
+ E I
Sbjct: 60 AQKDLERIFV 69
|
| >d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Score = 54.5 bits (130), Expect = 1e-09
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW 306
T LD R + L+ K GV V I G H +Q+P + I G + E I D K
Sbjct: 1 TVLDSIRFRYLLSEKLGVDVKNVHGY-IIGEHGDSQLPLWSCTHIAGKNINEYIDDPKC 58
|
| >d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Score = 54.5 bits (130), Expect = 1e-09
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD +R + L + V V I G H ++ + A I PV+++ K+
Sbjct: 1 TSLDSSRLRVALGKQFNVDPRSVDAY-IMGEHGDSEFAAYSTATIGTRPVRDVAKEQGVS 59
Query: 308 EEGFTETIQKVR 319
++ + VR
Sbjct: 60 DDDLAKLEDGVR 71
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Score = 53.9 bits (129), Expect = 2e-09
Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 12/148 (8%)
Query: 87 EEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA 146
EE T K I V G G + + + +A +L + L+G
Sbjct: 14 EEATVPNNK---ITVVGV-GQVGMACAISILG-------KSLADELALVDVLEDKLKGEM 62
Query: 147 MELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGK 206
M+L+ L + Y + +++ ++ + G R L+ N +F
Sbjct: 63 MDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIP 122
Query: 207 ALNAVASRNVKVIVVGNPCNTNALICLK 234
+ S + +IVV NP + + K
Sbjct: 123 QI-VKYSPDCIIIVVSNPVDILTYVTWK 149
|
| >d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 52.8 bits (126), Expect = 4e-09
Identities = 15/66 (22%), Positives = 24/66 (36%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R+ +A G +V I G+ T +P +E+ K +
Sbjct: 2 TTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVSFTEQEVADLTKRI 61
Query: 308 EEGFTE 313
+ TE
Sbjct: 62 QNAGTE 67
|
| >d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Score = 52.9 bits (126), Expect = 4e-09
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R + + + VS G H +Q + R+ G P+ +
Sbjct: 2 TLLDTARMQRAVGEAFDLDPRSVSGY-NLGEHGNSQFVAWSTVRVMGQPIVTLADAGDID 60
Query: 308 EEGFTETIQK 317
E +K
Sbjct: 61 LAAIEEEARK 70
|
| >d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 52.9 bits (126), Expect = 5e-09
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R + +A G V + G H ++VP + A I G+P++ + + +
Sbjct: 2 TVLDTARLRTLIAQHCGFSPRSVHVY-VIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKC 60
Query: 308 EEGFTETIQK 317
+ E +
Sbjct: 61 DSKILENFAE 70
|
| >d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 52.4 bits (125), Expect = 6e-09
Identities = 13/56 (23%), Positives = 21/56 (37%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD 303
T LD RA +A G+ +VS I G+ T +P ++ +
Sbjct: 2 TTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLST 57
|
| >d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Score = 52.6 bits (125), Expect = 6e-09
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
LD R + +A V V + G H VP +NG P+++ IKD E+
Sbjct: 4 LDSGRFRRYVADALSVSPRDVQAT-VIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEK 62
Query: 310 GFTETIQKVRLVDNFTLILFVMNCI 334
E + ++ +
Sbjct: 63 QLEEIAEHTKVSGGEIVRFLGQGSA 87
|
| >d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Score = 52.0 bits (124), Expect = 7e-09
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
LD R + +A++AGV V M + G H VP + I+G+PV E I + +
Sbjct: 4 LDAARYRTFIAMEAGVSVKDVQAM-LMGGHGDEMVPLPRFSTISGIPVSEFIAPDRLAQ- 61
Query: 310 GFTETIQK 317
E +K
Sbjct: 62 -IVERTRK 68
|
| >d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 51.4 bits (122), Expect = 1e-08
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R K +A GV D+V I G H + VP I G+P+++ + +
Sbjct: 3 THLDSLRFKVAIAKFFGVHIDEVRTR-IIGEHGDSMVPLLSATSIGGIPIQKFERFKELP 61
Query: 308 EEGFTETIQK 317
+ E ++
Sbjct: 62 IDEIIEDVKT 71
|
| >d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Score = 51.6 bits (123), Expect = 1e-08
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
LD R + +A++ GV ++ + G H VP + G+P+ +++ +
Sbjct: 4 LDAARFRSFIAMELGVSMQDINAC-VLGGHGDAMVPVVKYTTVAGIPISDLLPAETI--D 60
Query: 310 GFTETIQK 317
E +
Sbjct: 61 KLVERTRN 68
|
| >d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 50.6 bits (120), Expect = 3e-08
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
LD +R K ++ K V V+ I G H V + G+P++E I + +
Sbjct: 3 LDTSRLKYYISQKLNVCPRDVNAH-IVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDA 61
Query: 310 GFTETIQKV 318
+
Sbjct: 62 ELEAIFDRT 70
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Score = 49.3 bits (117), Expect = 5e-08
Identities = 30/143 (20%), Positives = 54/143 (37%), Gaps = 10/143 (6%)
Query: 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151
S + + G G + + F +A Q IA + + + +G A++LED
Sbjct: 1 SMPNHQKVVLVGD-GAVGSSYAFAMAQ-------QGIAEEFVIVDVVKDRTKGDALDLED 52
Query: 152 SLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
+ KI Y +DA+ ++ P+ PG R L++ N I + K +
Sbjct: 53 AQ-AFTAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS 111
Query: 212 ASRNVKVIVVGNPCNTNALICLK 234
+ +V NP + K
Sbjct: 112 GF-DGIFLVAANPVDILTYATWK 133
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.2 bits (117), Expect = 7e-08
Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 12/149 (8%)
Query: 86 AEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV 145
E+ S K I V G G + + G +AL + L G
Sbjct: 12 VPEDKLSRCK---ITVVGV-GDVGMACAISILLK---GLADELALV----DADTDKLRGE 60
Query: 146 AMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQG 205
A++L+ L + Y + +++ ++ G R LL N I
Sbjct: 61 ALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIV 120
Query: 206 KALNAVASRNVKVIVVGNPCNTNALICLK 234
+ S + K+IVV NP + + K
Sbjct: 121 PGV-IQNSPDCKIIVVTNPVDILTYVVWK 148
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Score = 48.5 bits (115), Expect = 8e-08
Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
I++ GA G + + LAA + + ++ + +G A++L ++
Sbjct: 4 ISIIGA-GFVGSTTAHWLAA-------KELG-DIVLLDIVEGVPQGKALDLYEASPIEGF 54
Query: 159 EVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
+V++ G N Y +++ ++ PR PGM R L+ +N I A S N
Sbjct: 55 DVRVTGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQA-APLSPNAV 113
Query: 218 VIVVGNPCNTNALICLK 234
+I+V NP + + +
Sbjct: 114 IIMVNNPLDAMTYLAAE 130
|
| >d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Score = 46.4 bits (109), Expect = 6e-07
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
RLD R + L+ + V I G H QVP F ++G + + + L
Sbjct: 3 GRLDSARFRYVLSEEFDAPVQNVEGT-ILGEHGDAQVPVFSKVSVDGTDPEFSGDEKEQL 61
Query: 308 EEGFTETIQKVRLVDNFT 325
E+ V T
Sbjct: 62 LGDLQESAMDVIERKGAT 79
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Score = 43.8 bits (103), Expect = 4e-06
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 10/136 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+A+ GA G + F +A + A +L+ + + G AM++ L P +
Sbjct: 4 VAIIGA-GFVGASAAFTMAL-------RQTANELVLIDVFKEKAIGEAMDINHGL-PFMG 54
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
++ + Y +D + ++ R PG R L N I E + + +
Sbjct: 55 QMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQN-IMKYYNHGVI 113
Query: 219 IVVGNPCNTNALICLK 234
+VV NP + + K
Sbjct: 114 LVVSNPVDIITYMIQK 129
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Score = 39.3 bits (91), Expect = 2e-04
Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 13/146 (8%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
++ +A+ G+ GMI + + A E+ + L + + + + + S+
Sbjct: 5 QRRKKVAMIGS-GMIGGTMGYLCALREL------ADVVLYDVVKGMPEGKALDLSHVTSV 57
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPG-----MERAGLLDINGQIFAEQGKAL 208
V+ + A+ ++ + PG R LL N +I E G+ +
Sbjct: 58 VDTNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNI 117
Query: 209 NAVASRNVKVIVVGNPCNTNALICLK 234
+IVV NP + + +
Sbjct: 118 KKY-CPKTFIIVVTNPLDCMVKVMCE 142
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Score = 37.3 bits (86), Expect = 8e-04
Identities = 20/167 (11%), Positives = 47/167 (28%), Gaps = 25/167 (14%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
KK +I ++G ++ L P + + L ER + +A + +
Sbjct: 1 KKSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKER----QDRIAGACDVFI 56
Query: 154 --FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
E +P E F D ++ + + + + + ++ +
Sbjct: 57 REKAPDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGI 116
Query: 212 ASR-------------------NVKVIVVGNPCNTNALICLKNAPSI 239
A + ++ NP A + P+
Sbjct: 117 AYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNS 163
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Score = 35.4 bits (81), Expect = 0.003
Identities = 20/159 (12%), Positives = 39/159 (24%), Gaps = 23/159 (14%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
IAV G L+ L + + E+ + + ++ L
Sbjct: 3 IAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEK-----QKIVVDFVKRLVKDRF 57
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN----GQIFAEQGKALNAVASR 214
+V I DA++ + G E + + GQ G A+ +
Sbjct: 58 KVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAF 117
Query: 215 NV--------------KVIVVGNPCNTNALICLKNAPSI 239
+ ++ NP
Sbjct: 118 PIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYE 156
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 337 | |||
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 100.0 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 100.0 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 100.0 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 100.0 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 100.0 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 100.0 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 100.0 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 100.0 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 100.0 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 100.0 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 100.0 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 100.0 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 100.0 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 99.97 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 99.97 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 99.97 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 99.97 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 99.97 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 99.97 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 99.96 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 99.91 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 99.9 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 99.89 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 99.88 | |
| d7mdha2 | 188 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 99.73 | |
| d1hyha2 | 163 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 99.7 | |
| d1hyea2 | 168 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 99.66 | |
| d1llda2 | 170 | Lactate dehydrogenase {Bifidobacterium longum, str | 99.61 | |
| d1y7ta2 | 173 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 99.61 | |
| d5mdha2 | 179 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 99.6 | |
| d1a5za2 | 172 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 99.59 | |
| d1i0za2 | 172 | Lactate dehydrogenase {Human (Homo sapiens), heart | 99.59 | |
| d1pzga2 | 174 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 99.57 | |
| d1b8pa2 | 171 | Malate dehydrogenase {Aquaspirillum arcticum [TaxI | 99.57 | |
| d1guza2 | 163 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 99.55 | |
| d1y6ja2 | 169 | Lactate dehydrogenase {Clostridium thermocellum [T | 99.55 | |
| d1ez4a2 | 171 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 99.54 | |
| d1ldna2 | 168 | Lactate dehydrogenase {Bacillus stearothermophilus | 99.53 | |
| d1ldma2 | 169 | Lactate dehydrogenase {Dogfish (Squalus acanthias) | 99.51 | |
| d2ldxa2 | 172 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 99.5 | |
| d1llca2 | 172 | Lactate dehydrogenase {Lactobacillus casei [TaxId: | 99.5 | |
| d1uxja2 | 164 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 99.48 | |
| d1t2da2 | 165 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 99.45 | |
| d1o6za2 | 161 | Malate dehydrogenase {Archaeon Haloarcula marismor | 99.44 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 99.36 | |
| d1mlda2 | 169 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 99.2 | |
| d1ojua2 | 152 | Lactate dehydrogenase {Archaeon Archaeoglobus fulg | 99.2 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.02 | |
| d2cmda2 | 167 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.99 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 98.95 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.31 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 98.29 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 98.12 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 98.07 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 98.05 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.98 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.87 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.83 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.79 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.62 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 97.56 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 97.47 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.44 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.4 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 97.35 | |
| d1up7a2 | 253 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 97.31 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.29 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 97.21 | |
| d1s6ya2 | 270 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 97.21 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 97.18 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.12 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 97.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 96.99 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.98 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 96.97 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 96.92 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 96.88 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 96.86 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 96.81 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 96.78 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 96.77 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.65 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.62 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 96.58 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.57 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.53 | |
| d1u8xx2 | 276 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 96.52 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 96.48 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 96.44 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 96.4 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 96.35 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 96.33 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 96.3 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 96.2 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 96.17 | |
| d1obba2 | 308 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 96.06 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.03 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.0 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 95.97 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.97 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 95.96 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.8 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 95.76 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 95.67 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 95.65 | |
| d1vjta2 | 278 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 95.61 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 95.59 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 95.57 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 95.56 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 95.55 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 95.46 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 95.45 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 95.44 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 95.43 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 95.43 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 95.41 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 95.38 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 95.32 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 95.22 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 95.05 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 95.01 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 95.0 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 94.94 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 94.92 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 94.91 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 94.84 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 94.81 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.79 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 94.78 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 94.74 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 94.67 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 94.62 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 94.61 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 94.51 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 94.51 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 94.49 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 94.42 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 94.33 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.22 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 94.05 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.0 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 93.96 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 93.93 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 93.87 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 93.85 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 93.74 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 93.63 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 93.58 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 93.57 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 93.53 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 93.49 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 93.48 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 93.45 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 93.45 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 93.41 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 93.4 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 93.34 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 93.3 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 93.23 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 93.23 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 93.22 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 93.16 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 93.16 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 93.1 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 93.04 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 93.03 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 93.02 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 93.0 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 92.98 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 92.93 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 92.9 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 92.74 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 92.74 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 92.67 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 92.56 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 92.47 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 92.4 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 92.34 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 92.16 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 92.16 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 92.11 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 91.94 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 91.91 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 91.81 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 91.76 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 91.62 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 91.49 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 91.41 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 91.39 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 91.35 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 91.31 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 91.22 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 91.19 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 91.14 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 91.05 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 91.04 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 90.97 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 90.93 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 90.88 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 90.88 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 90.87 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 90.74 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 90.7 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 90.63 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 90.57 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 90.29 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 90.16 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 90.08 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 90.03 | |
| d1rq2a1 | 198 | Cell-division protein FtsZ {Mycobacterium tubercul | 90.02 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 89.96 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 89.61 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 89.51 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 89.5 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 89.43 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 89.18 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 89.03 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 89.01 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 88.83 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 88.72 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 88.55 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 88.52 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 88.52 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 88.45 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 88.42 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 88.39 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 88.29 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 88.05 | |
| d2vapa1 | 209 | Cell-division protein FtsZ {Archaeon Methanococcus | 87.49 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 87.48 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 87.1 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 86.89 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 86.82 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 86.74 | |
| d1ofua1 | 198 | Cell-division protein FtsZ {Pseudomonas aeruginosa | 86.55 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 86.54 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 86.47 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 86.39 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 85.95 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 85.84 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 85.53 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 85.22 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 84.69 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 84.68 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 84.59 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 84.36 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 84.19 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 84.01 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 83.91 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 83.89 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 83.81 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 83.63 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 83.0 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.94 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 82.91 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 82.55 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 82.42 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 82.37 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 82.35 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 82.25 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 82.21 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 82.05 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 81.91 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 81.84 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 81.61 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 81.51 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 81.48 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 81.43 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 81.13 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 80.36 |
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=100.00 E-value=1.9e-44 Score=317.48 Aligned_cols=174 Identities=88% Similarity=1.391 Sum_probs=154.8
Q ss_pred CccceeeeeeeccchhhhhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhh
Q 019713 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS 152 (337)
Q Consensus 73 ~~~gv~~~~~~~~~~~~~~~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~ 152 (337)
|||||||++|++.+|+++++++++.||+|+||+|+||+++++.|++++++|+++.+.|+|+|++.+.+.++|++||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~ 80 (175)
T d7mdha1 1 DCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDS 80 (175)
T ss_dssp CCCGGGCC------------CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT
T ss_pred CceEeeecccccccchhhhccCCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccc
Confidence 79999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred ccCCcccEEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHH
Q 019713 153 LFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC 232 (337)
Q Consensus 153 ~~~~~~~v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~ 232 (337)
++++...+.++++++++++|+|+||+++|.||+|||+|.|++.+|.+|++++++.|+++|+++++|+++|||+|++|+++
T Consensus 81 a~~~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia 160 (175)
T d7mdha1 81 LYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC 160 (175)
T ss_dssp TCTTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH
T ss_pred ccccccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHH
Confidence 98888888889999999999999999999999999999999999999999999999999767999999999999999999
Q ss_pred HHHCCCCCCCeEEe
Q 019713 233 LKNAPSIPAKNFHA 246 (337)
Q Consensus 233 ~k~s~~~p~kvIG~ 246 (337)
+++++++|+++|.+
T Consensus 161 ~k~a~~ip~~~i~~ 174 (175)
T d7mdha1 161 LKNAPDIPAKNFHA 174 (175)
T ss_dssp HHTCTTSCGGGEEE
T ss_pred HHHCCCCCHHHEeC
Confidence 99988999977643
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.6e-35 Score=253.21 Aligned_cols=152 Identities=57% Similarity=0.903 Sum_probs=143.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d 172 (337)
|++++||+||||+|+||+++++.|+.++++++++.+.++|++.+.+.+++++.++|++|+..+....+..+++++++++|
T Consensus 1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
T d1y7ta1 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD 80 (154)
T ss_dssp CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhccc
Confidence 57889999999889999999999999999999999999999999999999999999999987777888888999999999
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeE
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNF 244 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvI 244 (337)
||+||+++|.||+||++|.|++..|+++++++++.|+++|+|+++|+++|||+|++|++++|+++++|+++|
T Consensus 81 advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a~k~asg~p~~rv 152 (154)
T d1y7ta1 81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNF 152 (154)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGE
T ss_pred ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHHHHHcCCCcHHhc
Confidence 999999999999999999999999999999999999999767999999999999999999998778998554
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=5.6e-35 Score=251.17 Aligned_cols=151 Identities=48% Similarity=0.722 Sum_probs=140.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
++++||+||||+|+||+++++.|+++++++.++.+.|+|+|++.++++++++.+|+.|+.++....+..+++++++++|+
T Consensus 1 s~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
T d5mdha1 1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDL 80 (154)
T ss_dssp CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTC
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCc
Confidence 46789999998899999999999999999888889999999999999999999999998877777788888899999999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeE
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNF 244 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvI 244 (337)
|+||+++|.||+||++|.|++.+|.+|++++++.|.+++.+++++|++|||+|+||++++|+++++|+++|
T Consensus 81 dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v~~k~s~g~P~~~v 151 (154)
T d5mdha1 81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENF 151 (154)
T ss_dssp SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGE
T ss_pred eEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHHHHHcCCCCHHHE
Confidence 99999999999999999999999999999999999999656778899999999999999999988998655
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=100.00 E-value=1.8e-34 Score=245.37 Aligned_cols=141 Identities=15% Similarity=0.232 Sum_probs=127.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
.||+||||+|+||+++|+.|+.+++++| |+|+|++.++++++|+++||.|+. ++..+.++++++|++++|||+|
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~e-----l~L~Di~~~~~~~~g~a~Dl~~~~-~~~~~~~i~~~~~~~~~~aDiV 74 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADE-----VVFVDIPDKEDDTVGQAADTNHGI-AYDSNTRVRQGGYEDTAGSDVV 74 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSE-----EEEECCGGGHHHHHHHHHHHHHHH-TTTCCCEEEECCGGGGTTCSEE
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCE-----EEEEecCCcccccceeecchhhcc-cccCCceEeeCCHHHhhhcCEE
Confidence 3999999779999999999999999864 567788777888999999999977 4555667777899999999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEE
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG 245 (337)
|+++|.||+|||+|.|++..|++|++++++.|.++ +|+++++++|||+|+||++++|.+ ++|+ |+||
T Consensus 75 vitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~-~p~~i~ivvtNPvDvmt~~~~k~s-g~~~~rViG 142 (142)
T d1o6za1 75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDLLNRHLYEAG-DRSREQVIG 142 (142)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCSSHHHHHHHHHHHS-SSCGGGEEE
T ss_pred EEecccccccCCchhhHHHHHHHHHHHHHHHHHhc-CCCceEEEecChHHHHHHHHHHHH-CcCcccccC
Confidence 99999999999999999999999999999999998 799999999999999999999998 5776 7777
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=100.00 E-value=5.7e-34 Score=242.53 Aligned_cols=142 Identities=20% Similarity=0.265 Sum_probs=124.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|.||+|||| |+||+++|+.|+..++++| +. |+ |.++++++|+++||+|+...........++++++++|||+
T Consensus 1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~E---lv--L~--D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDv 72 (143)
T d1llda1 1 PTKLAVIGA-GAVGSTLAFAAAQRGIARE---IV--LE--DIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADM 72 (143)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCSE---EE--EE--CSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCcE---EE--EE--EeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcE
Confidence 569999995 9999999999999999875 44 44 4567889999999999864333333345678999999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEec
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~g 247 (337)
||+++|.||+||++|+|++..|.+|+++++++|+++ +|++++|++|||+|+||+++++.+ ++|+ |+||+|
T Consensus 73 VVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~-~p~ai~ivvtNPvDvmt~~~~~~s-g~p~~rViG~G 143 (143)
T d1llda1 73 VVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLT-GLPENQIFGSG 143 (143)
T ss_dssp EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHH-TCCTTSEEECT
T ss_pred EEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhh-CCCeEEEEeCCchHHHHHHHHHHH-CCChhhccCCC
Confidence 999999999999999999999999999999999998 799999999999999999999998 5776 889986
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=5.1e-34 Score=243.93 Aligned_cols=144 Identities=21% Similarity=0.264 Sum_probs=128.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
+...||+|||| |+||+++|+.|+..++++| +. |+| .++++++|+++||+|+.......+.++++++++++||
T Consensus 4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~e---l~--L~D--i~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~da 75 (148)
T d1ldna1 4 NGGARVVVIGA-GFVGASYVFALMNQGIADE---IV--LID--ANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDA 75 (148)
T ss_dssp TTSCEEEEECC-SHHHHHHHHHHHHHTCCSE---EE--EEC--SSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTC
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHhcCCCce---EE--EEe--eccccccchhccHhhCccccCCCeEEEECCHHHhccc
Confidence 45679999996 9999999999999999865 44 544 4678899999999998755555677778899999999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEec
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~g 247 (337)
|+||+++|.||+||++|.|++.+|++|++++++.|+++ +|++++|++|||+|+||+++++.+ ++|+ |+||+|
T Consensus 76 Dvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~~ivvtNPvd~~t~~~~k~s-g~p~~rViG~G 148 (148)
T d1ldna1 76 DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVATNPVDILTYATWKFS-GLPHERVIGSG 148 (148)
T ss_dssp SEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEECSSSHHHHHHHHHHHH-TCCGGGEEECT
T ss_pred eeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhh-CCCceEEEecCccHHHHHHHHHHH-CcChhheecCC
Confidence 99999999999999999999999999999999999999 799999999999999999999998 5776 889986
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.9e-33 Score=237.09 Aligned_cols=139 Identities=23% Similarity=0.379 Sum_probs=124.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+|||| |+||+++++.|+..++++| |+|+| .++++++|+++|+.|+. ++..+..+.++++++++|||+|
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~e-----l~L~D--i~~~~~~g~~~Dl~~~~-~~~~~~~~~~~~~~~~~~adiv 71 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFARE-----MVLID--VDKKRAEGDALDLIHGT-PFTRRANIYAGDYADLKGSDVV 71 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSE-----EEEEC--SSHHHHHHHHHHHHHHG-GGSCCCEEEECCGGGGTTCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCE-----EEEEe--cccccccchhccccccc-cccccccccCCcHHHhcCCCEE
Confidence 69999995 9999999999999999764 44555 45689999999999987 5555666777899999999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEe
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHA 246 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~ 246 (337)
|+++|.||+||++|.|++.+|.+|++++++.|.++ +|++++|++|||+|+||+++++.+ ++|+ |+||+
T Consensus 72 vitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~-~p~aivivvtNPvd~~t~~~~k~s-g~p~~rViGt 140 (140)
T d1a5za1 72 IVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVTNPVDVLTYFFLKES-GMDPRKVFGS 140 (140)
T ss_dssp EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHHHHHH-TCCTTTEEEC
T ss_pred EEecccccCCCcchhhhhccccchHHHHHHHHHhc-CCCcEEEEeCCcHHHHHHHHHHHH-CcCccceeCc
Confidence 99999999999999999999999999999999999 799999999999999999999998 5776 78885
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=100.00 E-value=4e-33 Score=237.96 Aligned_cols=145 Identities=19% Similarity=0.270 Sum_probs=117.3
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC
Q 019713 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (337)
Q Consensus 92 ~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~ 171 (337)
+|.+.+||+|||| |+||+++|+.|+..++.+| + +|+| +++++++|+++||+|+.. +.....+.++++++++
T Consensus 1 sm~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~e---l--vL~D--~~~~~~~g~a~Dl~~a~~-~~~~~~~~~~d~~~~~ 71 (146)
T d1ez4a1 1 SMPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEE---F--VIVD--VVKDRTKGDALDLEDAQA-FTAPKKIYSGEYSDCK 71 (146)
T ss_dssp CBTTBCEEEEECC-SHHHHHHHHHHHHHTCCSE---E--EEEC--SSHHHHHHHHHHHHGGGG-GSCCCEEEECCGGGGT
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhcCCCcE---E--EEee--cccchhHHHHHHHhcccc-ccCCceEeeccHHHhc
Confidence 4667789999995 9999999999999999864 4 4554 466889999999999874 3334445567899999
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEec
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~g 247 (337)
|||+||+++|.|++||++|.+++.+|+++++++++.|.++ +|++++|++|||+|++|+++++.+ ++|+ |+||+|
T Consensus 72 ~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvtNPvdv~t~~~~k~s-g~p~~rViG~G 146 (146)
T d1ez4a1 72 DADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPVDILTYATWKFS-GFPKERVIGSG 146 (146)
T ss_dssp TCSEEEECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECT
T ss_pred cccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeCCccHHHHHHHHHHH-CcCccceecCC
Confidence 9999999999999999999999999999999999999998 799999999999999999999998 5776 789986
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=100.00 E-value=1e-32 Score=238.79 Aligned_cols=143 Identities=17% Similarity=0.230 Sum_probs=127.2
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d 172 (337)
..+..||+|||| |+||+++|+.|+..++++| +. |+ |.++++++|+++||+|+.........+..++|++++|
T Consensus 17 ~~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~E---lv--Li--D~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~ 88 (160)
T d1i0za1 17 TVPNNKITVVGV-GQVGMACAISILGKSLADE---LA--LV--DVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTAN 88 (160)
T ss_dssp CCCSSEEEEECC-SHHHHHHHHHHHHTTCCSE---EE--EE--CSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTT
T ss_pred cCCCCeEEEECC-CHHHHHHHHHHHhcCCCcE---EE--EE--EeccchhHHHHHHHhccccccCCCeEEeccchhhccc
Confidence 445679999995 9999999999999999975 44 44 5577899999999999875444456667889999999
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEE
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG 245 (337)
||+||+++|.||+||++|++++..|++|++++++.|+++ +|++++|++|||+|+||+++++.+ ++|+ |+||
T Consensus 89 adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiivvtNPvDv~t~~~~k~s-glp~~rViG 160 (160)
T d1i0za1 89 SKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVSNPVDILTYVTWKLS-GLPKHRVIG 160 (160)
T ss_dssp CSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHHHHHH-CCCGGGEEE
T ss_pred ccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCCchHHHHHHHHHHH-CcCcccccC
Confidence 999999999999999999999999999999999999998 799999999999999999999998 6776 7887
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=100.00 E-value=4.3e-33 Score=236.71 Aligned_cols=140 Identities=21% Similarity=0.313 Sum_probs=116.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
.||+|||| |+||+++++.|+..++++| + +|+| .++++++|+++||+|+. ++..+..++++++++++|||+|
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~e---l--~L~D--~~~~~~~g~a~Dl~~~~-~~~~~~~~~~~~~~~~~~adiv 72 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANE---L--VLID--VFKEKAIGEAMDINHGL-PFMGQMSLYAGDYSDVKDCDVI 72 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSE---E--EEEC--CC---CCHHHHHHTTSC-CCTTCEEEC--CGGGGTTCSEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCE---E--EEEe--ccCCccceeeeeeccCc-ccCCCeeEeeCcHHHhCCCceE
Confidence 59999996 9999999999999999865 4 4554 45678899999999987 5556677778899999999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEec
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~g 247 (337)
|+++|.|++||++|.+++.+|.+|++++++.|.++ +|++++|++|||+|+||+++++.+ ++|+ |+||+|
T Consensus 73 vitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~-~p~ai~ivvtNPvdv~t~~~~k~s-g~p~~rViG~G 142 (142)
T d1y6ja1 73 VVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNPVDIITYMIQKWS-GLPVGKVIGSG 142 (142)
T ss_dssp EECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSSHHHHHHHHHHHH-TCCTTTEEECT
T ss_pred EEecccccCcCcchhHHhhHHHHHHHHHHHHhhcc-CCCceEEEecChHHHHHHHHHHHH-CCCccceecCC
Confidence 99999999999999999999999999999999999 799999999999999999999998 5776 899986
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.1e-32 Score=234.28 Aligned_cols=139 Identities=23% Similarity=0.344 Sum_probs=122.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcc--cEEEecCcccccCCCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR--EVKIGINPYELFEDAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~--~v~i~t~~~eal~dAD 174 (337)
|||+|||| |+||+++|+.|+..++++| + +|+ |.++++++|+++||+|+...+.. ++. .++++++++|||
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~e---l--vL~--Di~~~~~~g~alDl~~~~~~~~~~~~i~-~~~d~~~~~~ad 71 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDE---I--ALV--DIAEDLAVGEAMDLAHAAAGIDKYPKIV-GGADYSLLKGSE 71 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSE---E--EEE--CSSHHHHHHHHHHHHHHHHTTTCCCEEE-EESCGGGGTTCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCce---E--EEE--ecccchhhHHHHHHhhhccccCCCCccc-cCCCHHHhcccc
Confidence 79999995 9999999999999999875 4 454 45678999999999998744333 333 346799999999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEe
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHA 246 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~ 246 (337)
+||+++|.||+||++|.+++.+|.+|++++++.|.++ +|+++++++|||+|++|+++++.+ ++|+ |+||.
T Consensus 72 iVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvtNPvD~~t~~~~k~s-g~p~~rViG~ 142 (142)
T d1ojua1 72 IIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPMDVMTYIMWKES-GKPRNEVFGM 142 (142)
T ss_dssp EEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSHHHHHHHHHHHS-CCCTTSEEEC
T ss_pred EEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEecCChHHHHHHHHHHH-CCChhcEecC
Confidence 9999999999999999999999999999999999999 799999999999999999999998 5766 78884
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-32 Score=234.30 Aligned_cols=141 Identities=21% Similarity=0.378 Sum_probs=123.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcc--cEEEe-cCcccccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR--EVKIG-INPYELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~--~v~i~-t~~~eal~dA 173 (337)
|||+||||+|+||+++|+.|+..++++| |.|+|++.+.++++|+++||+|+...... ++.+. ++++++++||
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~e-----l~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~a 75 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKD-----LVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDES 75 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCE-----EEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccc-----cccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccc
Confidence 6999999779999999999999999875 55677777778899999999998754443 44443 5689999999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEE
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG 245 (337)
|+||+|+|.||+||++|.|++..|++|++++++.|.++ +|+++ +++|||+|+||+++++.+ ++|+ |+||
T Consensus 76 DvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~-~~~~i-ivVtNPvD~mt~~~~k~s-g~p~~rViG 145 (145)
T d1hyea1 76 DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI-CDTKI-FVITNPVDVMTYKALVDS-KFERNQVFG 145 (145)
T ss_dssp SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CCCEE-EECSSSHHHHHHHHHHHH-CCCTTSEEE
T ss_pred eEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhcc-CCCeE-EEEcCchHHHHHHHHHHH-CcCcccccC
Confidence 99999999999999999999999999999999999999 68875 568999999999999998 6776 7887
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=100.00 E-value=5.9e-33 Score=236.97 Aligned_cols=140 Identities=17% Similarity=0.251 Sum_probs=118.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
+||+|||| |+||+++|+.|+..++.+| +. |+| .++++++|+++||+|+...+..+..+.++++++++|||+|
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~e---lv--L~D--i~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiV 73 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADD---YV--FID--ANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVV 73 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSE---EE--EEC--SSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEE
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCce---EE--EEe--cccchhhhHHHhhhccccccCCccceeccCHHHhccccEE
Confidence 69999995 9999999999999999865 44 444 4678999999999998754445556667889999999999
Q ss_pred EEecccCC----CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEe
Q 019713 177 LLIGAKPR----GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHA 246 (337)
Q Consensus 177 Iitag~pr----k~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~ 246 (337)
|+++|.|| +||++|.+++..|++|++++++.|+++ +|++++|++|||+|+||++++|.+ ++|+ |+||+
T Consensus 74 VitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtNPvD~~t~~~~k~s-g~p~~rViGt 146 (146)
T d1hyha1 74 ISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVISNPVDVITALFQHVT-GFPAHKVIGT 146 (146)
T ss_dssp EECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEEC
T ss_pred EEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCcHHHHHHHHHHHh-CCCccceeCc
Confidence 99999887 789999999999999999999999998 799999999999999999999998 6776 78885
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3.8e-32 Score=231.68 Aligned_cols=140 Identities=25% Similarity=0.304 Sum_probs=119.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|||+||||+|+||+++|+.|+.+ ++..| |+|+|++ +.++|+++||+|+.+........+++++++++|||+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~e-----l~L~D~~---~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDv 72 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSE-----LSLYDIA---PVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADV 72 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCE-----EEEECSS---TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSE
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcE-----EEEeccc---ccchhHHHHHHCCccccCCcEEEcCCCccccCCCCE
Confidence 69999997799999999999865 56543 5566653 357899999999875554444445678999999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHH---HCCCCCC-CeEE
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLK---NAPSIPA-KNFH 245 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k---~s~~~p~-kvIG 245 (337)
||+++|.||+||++|.|++..|.+|++++++.|.++ +|+++||++|||+|+|++++++ .++++|+ |+||
T Consensus 73 vvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~-~p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG 145 (145)
T d2cmda1 73 VLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG 145 (145)
T ss_dssp EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred EEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhh-CCCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence 999999999999999999999999999999999999 7999999999999999998865 3446776 7776
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=4.7e-32 Score=234.42 Aligned_cols=140 Identities=19% Similarity=0.251 Sum_probs=125.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..||+|||| |+||+++|+.|+..++++| +. |+ |.++++++|+++||+|+...+.....+.++++++++|||+
T Consensus 19 ~~KI~IIGa-G~VG~~~A~~l~~~~l~~e---lv--L~--D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adi 90 (159)
T d2ldxa1 19 RCKITVVGV-GDVGMACAISILLKGLADE---LA--LV--DADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKL 90 (159)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTTSCSE---EE--EE--CSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEE
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCCCE---EE--EE--eCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccE
Confidence 469999995 9999999999999999875 44 44 4567899999999999875555456666788999999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEE
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG 245 (337)
||+++|.||+||++|.+++..|++|++++++.|.++ +|++++|++|||+|+||+++++.+ ++|+ |+||
T Consensus 91 vvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~-~p~~ivivvtNPvDv~t~~~~k~s-g~p~~rV~G 159 (159)
T d2ldxa1 91 VIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQN-SPDCKIIVVTNPVDILTYVVWKIS-GFPVGRVIG 159 (159)
T ss_dssp EEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHH-STTCEEEECSSSHHHHHHHHHHHH-CSCTTTEEE
T ss_pred EEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhcc-CCCeEEEEeCCcHHHHHHHHHHHH-CcCcccccC
Confidence 999999999999999999999999999999999998 799999999999999999999998 5776 7887
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=99.97 E-value=8.3e-32 Score=228.24 Aligned_cols=140 Identities=26% Similarity=0.367 Sum_probs=121.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecCcccccCCCcE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEW 175 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~~~eal~dADv 175 (337)
|||+|||| |+||+++++.|+.+++++| + +|+| .++++++++++|++|.......+.++ .++++++++|||+
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~e---l--~L~D--i~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadv 72 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARE---L--VLLD--VVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDI 72 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSE---E--EEEC--SSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCce---E--EEec--cccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeE
Confidence 69999995 9999999999999999864 4 4555 45678899999999976322223333 3578999999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEe
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHA 246 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~ 246 (337)
||+++|.||+||++|.+++.+|++|++++++.|.++ +|+++++++|||+|++|+++++.+ ++|+ |+||.
T Consensus 73 vvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtNPvd~~~~~~~~~s-g~p~~rviG~ 142 (142)
T d1guza1 73 VIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVSNPLDIMTHVAWVRS-GLPKERVIGM 142 (142)
T ss_dssp EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECCSSHHHHHHHHHHHH-CSCGGGEEEE
T ss_pred EEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhcc-CCCeEEEEecCChHHHHHHHHHHh-CCChHhEeeC
Confidence 999999999999999999999999999999999998 799999999999999999999998 6776 78884
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.97 E-value=7.3e-31 Score=223.39 Aligned_cols=138 Identities=24% Similarity=0.306 Sum_probs=116.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCcccccCCCcEE
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEWA 176 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~~eal~dADvV 176 (337)
||+||||+|+||+++|+.|+.+++++| |+|+|++ +.+|+++|++|+......+..+. ++++++++|||+|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~e-----lvLiDi~----~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDiv 72 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSR-----LTLYDIA----HTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVV 72 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSE-----EEEEESS----SHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred eEEEECCCChHHHHHHHHHHhCCccce-----EEEEecc----ccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEE
Confidence 999999779999999999999999875 4455553 35788999999874433343443 4557889999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHH---HHCCCCCC-CeEE
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL---KNAPSIPA-KNFH 245 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~---k~s~~~p~-kvIG 245 (337)
|+++|.||+|||+|.+++..|.+|+++++++|.++ +|+++++++|||+|+||++++ +..+++|+ |+||
T Consensus 73 Vitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG 144 (144)
T d1mlda1 73 VIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG 144 (144)
T ss_dssp EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred EECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence 99999999999999999999999999999999999 899999999999999888764 44557776 7887
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=99.97 E-value=7.2e-31 Score=222.78 Aligned_cols=138 Identities=24% Similarity=0.343 Sum_probs=110.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecCcccccCCCcE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEW 175 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~~~eal~dADv 175 (337)
+||+|||| |+||+++|+.|+.+++. .+.|+| .++++++|+++|++|+.........+ .++++++++|||+
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~------dl~l~D--~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~adv 72 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELG------DIVLLD--IVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDV 72 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCS------EEEEEC--SSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSE
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcc------eEEEEe--eccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCE
Confidence 59999995 99999999999998873 244544 46678999999999987433333333 3578999999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEE
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG 245 (337)
||+++|.|++||++|.+++..|.+|+++++++|.++ +|+++++++|||+|+||+++++.+ ++|+ |+||
T Consensus 73 vvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~-~p~aivivvtNPvDv~t~~~~~~s-glp~~rViG 141 (142)
T d1uxja1 73 IVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVNNPLDAMTYLAAEVS-GFPKERVIG 141 (142)
T ss_dssp EEECCSCC---------CHHHHHHHHHHHHHHHGGG-CTTCEEEECSSSHHHHHHHHHHHH-CCCGGGEEE
T ss_pred EEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhcc-CCCceEEEeCCchHHHHHHHHHHH-CcCcccccC
Confidence 999999999999999999999999999999999998 899999999999999999999998 6776 7887
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.97 E-value=2e-30 Score=222.11 Aligned_cols=141 Identities=21% Similarity=0.328 Sum_probs=120.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccE-EEecCcccccCCCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREV-KIGINPYELFEDAE 174 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v-~i~t~~~eal~dAD 174 (337)
..||+|||| |+||+++|+.|+.+++ .| |.|+|+ ++++++|+++||+|+......+. ...++++++++|||
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~~l-~e-----l~L~Di--~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~ad 73 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQKNL-GD-----VVLFDI--VKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGAD 73 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-CE-----EEEECS--SSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCS
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCC-Ce-----EEEEec--cCCcceeeecchhhhccccCCCcEEEecccccccCCCc
Confidence 469999995 9999999999998886 22 445554 66789999999999863222232 23357899999999
Q ss_pred EEEEecccCCCCCCc-----hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEec
Q 019713 175 WALLIGAKPRGPGME-----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (337)
Q Consensus 175 vVIitag~prk~g~~-----R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~g 247 (337)
+||+++|.|++||++ |++++..|.++++++++.|+++ +|+++++++|||+|+||+++++.+ ++|+ |+||+|
T Consensus 74 vvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~-~p~aivivvtNPvD~~t~~~~~~s-g~p~~rViG~G 150 (150)
T d1t2da1 74 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLG 150 (150)
T ss_dssp EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECC
T ss_pred EEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchHHHHHHHHHHH-CCCchheeccC
Confidence 999999999999976 9999999999999999999999 799999999999999999999998 5776 889986
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=99.96 E-value=1.4e-29 Score=217.51 Aligned_cols=144 Identities=20% Similarity=0.265 Sum_probs=122.4
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC--cccEEEecCcccc
Q 019713 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYEL 169 (337)
Q Consensus 92 ~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~--~~~v~i~t~~~ea 169 (337)
++++.+||+|||| |.||+++|+.|+..++. .|.|+| .++++++|+++|+.|+.... ...+..+++.+++
T Consensus 3 ~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~------el~L~D--~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~ 73 (154)
T d1pzga1 3 LVQRRKKVAMIGS-GMIGGTMGYLCALRELA------DVVLYD--VVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAA 73 (154)
T ss_dssp CCSCCCEEEEECC-SHHHHHHHHHHHHHTCC------EEEEEC--SSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHH
T ss_pred cccCCCcEEEECC-CHHHHHHHHHHHhCCCc------eEEEEE--eccccchhHHHHHhhhccccCCeeEEeccCchhhh
Confidence 4677899999996 99999999999998873 244544 46689999999999976322 2344455555689
Q ss_pred cCCCcEEEEecccCCCCCC-----chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-Ce
Q 019713 170 FEDAEWALLIGAKPRGPGM-----ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KN 243 (337)
Q Consensus 170 l~dADvVIitag~prk~g~-----~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kv 243 (337)
++|||+||+++|.||+||+ +|.+++..|+++++++++.|.++ +|++++|++|||+|++|+++++.+ ++|+ |+
T Consensus 74 ~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~-~p~aiviivsNPvd~lt~~~~~~s-g~p~~rV 151 (154)
T d1pzga1 74 LTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVTNPLDCMVKVMCEAS-GVPTNMI 151 (154)
T ss_dssp HTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHHHHHHHHHHHH-CCCGGGE
T ss_pred hcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhc-CCCcEEEEeCCcHHHHHHHHHHHh-CcChhcE
Confidence 9999999999999999985 89999999999999999999999 799999999999999999999998 5776 78
Q ss_pred EEe
Q 019713 244 FHA 246 (337)
Q Consensus 244 IG~ 246 (337)
||.
T Consensus 152 iG~ 154 (154)
T d1pzga1 152 CGM 154 (154)
T ss_dssp EEC
T ss_pred ecC
Confidence 884
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.91 E-value=1.9e-24 Score=187.90 Aligned_cols=142 Identities=10% Similarity=-0.051 Sum_probs=110.3
Q ss_pred CEEEEEcCCCchHHHH--HHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc----cCCcccEEEecCccccc
Q 019713 97 VNIAVSGAAGMIANHL--LFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYELF 170 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~l--a~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~----~~~~~~v~i~t~~~eal 170 (337)
+||+|||| |++|.+. +..+.....+. ..+|.|+|++ +++.++.++|+.+.. .....++..++|.++++
T Consensus 2 ~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~---~~eI~L~Di~--e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al 75 (169)
T d1s6ya1 2 LKIATIGG-GSSYTPELVEGLIKRYHELP---VGELWLVDIP--EGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRAL 75 (169)
T ss_dssp EEEEEETT-TCTTHHHHHHHHHHTTTTCC---EEEEEEECCG--GGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHH
T ss_pred cEEEEECC-ChhhHHHHHHHHHHhccccC---CCEEEEEcCC--ccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhc
Confidence 69999996 9887653 34444433332 1356676664 455667778876643 13345677788889999
Q ss_pred CCCcEEEEecccCCCCCCchhhh--------------------HHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHH
Q 019713 171 EDAEWALLIGAKPRGPGMERAGL--------------------LDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~dl--------------------l~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~ 230 (337)
+|||+||+++|.++++|++|.++ +.+|+++++++++.|+++ +|+||+|++|||+|+||+
T Consensus 76 ~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~-~pda~~i~vtNPvdv~t~ 154 (169)
T d1s6ya1 76 DGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFTNPAGMVTE 154 (169)
T ss_dssp TTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHH
T ss_pred CCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhc-CCCeEEEEeCChHHHHHH
Confidence 99999999999999888887766 468999999999999999 799999999999999999
Q ss_pred HHHHHCCCCCCCeEEec
Q 019713 231 ICLKNAPSIPAKNFHAL 247 (337)
Q Consensus 231 i~~k~s~~~p~kvIG~g 247 (337)
+++|.+| +.|+||.|
T Consensus 155 ~~~k~~p--~~kviGlC 169 (169)
T d1s6ya1 155 AVLRYTK--QEKVVGLC 169 (169)
T ss_dssp HHHHHCC--CCCEEECC
T ss_pred HHHHHCC--CCCEEeeC
Confidence 9999863 34899975
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=99.90 E-value=3.3e-24 Score=186.20 Aligned_cols=144 Identities=15% Similarity=0.050 Sum_probs=111.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhcc--CCcccEEEecCcccccC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFE 171 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~--~~~~~v~i~t~~~eal~ 171 (337)
++..||+|||| |.+|...+.......... ...-+|.|+|+ +++++++.++|+.+... ....++..++|.+++++
T Consensus 1 ~k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~-l~~~eivL~Di--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~ 76 (167)
T d1u8xx1 1 KKSFSIVIAGG-GSTFTPGIVLMLLDHLEE-FPIRKLKLYDN--DKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFT 76 (167)
T ss_dssp CCCEEEEEECT-TSSSHHHHHHHHHHTTTT-SCEEEEEEECS--CHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHS
T ss_pred CCCceEEEECC-ChhhhHHHHHHHHhhhhh-cCCCEEEEEcC--ChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccC
Confidence 35689999996 999887554333222211 01124566665 56788888888777542 33346777888899999
Q ss_pred CCcEEEEecccCCCCCCchhhhHH--------------------hhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHH
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLD--------------------INGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~--------------------~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i 231 (337)
|||+||+++|.++++|++|.+++. +|+++++++++.|+++ +|+||+|++|||+|++|++
T Consensus 77 ~AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~-~P~A~li~~TNPvdv~t~~ 155 (167)
T d1u8xx1 77 DVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKY-SPDAWMLNYSNPAAIVAEA 155 (167)
T ss_dssp SCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSCHHHHHHH
T ss_pred CCCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhh-CCCeEEEEeCCHHHHHHHH
Confidence 999999999999999999988764 5699999999999999 7999999999999999999
Q ss_pred HHHHCCCCCCCeE
Q 019713 232 CLKNAPSIPAKNF 244 (337)
Q Consensus 232 ~~k~s~~~p~kvI 244 (337)
++|++| +.|+|
T Consensus 156 ~~k~~P--~~rVI 166 (167)
T d1u8xx1 156 TRRLRP--NSKIL 166 (167)
T ss_dssp HHHHST--TCCEE
T ss_pred HHHHCC--ccccc
Confidence 999862 23666
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=8.4e-23 Score=177.68 Aligned_cols=141 Identities=16% Similarity=0.174 Sum_probs=110.1
Q ss_pred CCCEEEEEcCCCchHHHHHH--HHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhcc--CCcccEEEecCccccc
Q 019713 95 KMVNIAVSGAAGMIANHLLF--KLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELF 170 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~--~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~--~~~~~v~i~t~~~eal 170 (337)
+.|||+|||| |++|++++. .|+....+. ..+|.|+|+ +++++++.++|+.|... ....++..++|.++++
T Consensus 1 p~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~---~~eivL~Di--d~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL 74 (171)
T d1obba1 1 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLS---GSTVTLMDI--DEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVI 74 (171)
T ss_dssp CCCEEEEETT-TCHHHHHHHHHHHHTCGGGT---TCEEEEECS--CHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHH
T ss_pred CCcEEEEECC-CHHHhHHHHHHHHHhccccC---CCEEEEEeC--CchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcc
Confidence 3589999995 999988543 344332221 124556555 57899999999998652 2334677778889999
Q ss_pred CCCcEEEEecc------------------cCCCCCCchhhh--------HHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 171 EDAEWALLIGA------------------KPRGPGMERAGL--------LDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 171 ~dADvVIitag------------------~prk~g~~R~dl--------l~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
+|||+||++.+ .+++++++|.++ +.+|+++++++++.|+++ +|++|+|++|||
T Consensus 75 ~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~-~p~a~~i~~TNP 153 (171)
T d1obba1 75 IDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKL-SPKAWYLQAANP 153 (171)
T ss_dssp TTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHH-CTTCEEEECSSC
T ss_pred cCCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHH-CcCeEEEEECCh
Confidence 99999998753 466778888775 568999999999999999 799999999999
Q ss_pred chhHHHHHHHHCCCCCCCeEE
Q 019713 225 CNTNALICLKNAPSIPAKNFH 245 (337)
Q Consensus 225 vd~~t~i~~k~s~~~p~kvIG 245 (337)
+|++|++++|+++ + |+||
T Consensus 154 vdv~t~~~~k~~~-~--k~iG 171 (171)
T d1obba1 154 IFEGTTLVTRTVP-I--KAVG 171 (171)
T ss_dssp HHHHHHHHHHHSC-S--EEEE
T ss_pred HHHHHHHHHHhcC-C--CccC
Confidence 9999999999984 5 7776
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=5.4e-24 Score=183.66 Aligned_cols=142 Identities=14% Similarity=0.012 Sum_probs=107.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+|||| |++|.+.++......... ...-+|.|+|+| +++++ .+.|+.+.......++.++++++++++|||+|
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~-~~~~el~L~Did--~~k~~-~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvV 75 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISED-VRIDEVIFYDID--EEKQK-IVVDFVKRLVKDRFKVLISDTFEGAVVDAKYV 75 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTT-SCCCEEEEECSC--HHHHH-HHHHHHHHHHTTSSEEEECSSHHHHHTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcccc-cCccEEEEEecC--cHHHH-HHHHHHHhhhccCceEEEecCcccccCCCCEE
Confidence 69999996 999999887644332211 001246666664 45665 46788777655556788889999999999999
Q ss_pred EEecccCCCCCCchhhhHHh--------------------hHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHC
Q 019713 177 LLIGAKPRGPGMERAGLLDI--------------------NGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA 236 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~--------------------N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s 236 (337)
|+++|.|++++++|.+++.. +++++.++.+ +.++ +|+||+|++|||+|.+|+++++.+
T Consensus 76 Vita~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~~-~p~a~~i~vtNPvdiit~~~~~~~ 153 (162)
T d1up7a1 76 IFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVRK-TSNATIVNFTNPSGHITEFVRNYL 153 (162)
T ss_dssp EECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHHH-TTCCEEEECSSSHHHHHHHHHHTT
T ss_pred EEecccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhcc-CCCeEEEEeCCHHHHHHHHHHHhC
Confidence 99999999999888877655 4556666655 7777 799999999999999999999986
Q ss_pred CCCCCCeEEec
Q 019713 237 PSIPAKNFHAL 247 (337)
Q Consensus 237 ~~~p~kvIG~g 247 (337)
| +.|+||.|
T Consensus 154 p--~~rviGlC 162 (162)
T d1up7a1 154 E--YEKFIGLC 162 (162)
T ss_dssp C--CSSEEECC
T ss_pred C--CCCEEeeC
Confidence 3 24899975
|
| >d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=99.73 E-value=5.9e-19 Score=155.48 Aligned_cols=77 Identities=78% Similarity=1.114 Sum_probs=72.6
Q ss_pred CchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccc
Q 019713 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~ 324 (337)
|+||++|||++||+++||+|++|++++||||||++|||+||+++|+|.|+.++++++.|..+++.+.++++|++...
T Consensus 1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGds~vp~~S~a~v~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii~ 77 (188)
T d7mdha2 1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQ 77 (188)
T ss_dssp CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCCcEeeeeeccEeeccchhhcccchhhhHHHHHHHHhhhHHHHHH
Confidence 78999999999999999999999987899999999999999999999999999998889999999999999987644
|
| >d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=99.70 E-value=2.3e-18 Score=147.29 Aligned_cols=77 Identities=18% Similarity=0.120 Sum_probs=67.6
Q ss_pred cCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccc
Q 019713 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 247 gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~ 324 (337)
||.||++||+++||+++|++|.+|+. +||||||++|||+||+++++|+|+.+++.+..|+.+++.+.++++|++...
T Consensus 1 GT~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i~~ 77 (163)
T d1hyha2 1 GTLLDTARMQRAVGEAFDLDPRSVSG-YNLGEHGNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLN 77 (163)
T ss_dssp TTHHHHHHHHHHHHHHHTCCGGGCBC-CEEBCTTTTCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhCcCHHHeEE-EEEcCCCCcCccceeccccCCchHHHHhccccchHHHHHHHHhhhHHHHHH
Confidence 79999999999999999999999985 899999999999999999999999999988888899999999998876644
|
| >d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.66 E-value=4.9e-17 Score=139.48 Aligned_cols=77 Identities=25% Similarity=0.284 Sum_probs=70.3
Q ss_pred ecCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCccc
Q 019713 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDN 323 (337)
Q Consensus 246 ~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~ 323 (337)
+||.||++||+++||+++|+++.+|+. +||||||++|||+||+++++|+|+.++.....+..+++.+.++++++...
T Consensus 1 ~GT~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (168)
T d1hyea2 1 LGTHLDSLRFKVAIAKFFGVHIDEVRT-RIIGEHGDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQII 77 (168)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCGGGEEC-CEEECSSTTEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCC
T ss_pred CCchHHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCCccccchhheeECCEecccccccchhhhhhHHHHHhhhHHHHH
Confidence 489999999999999999999999985 99999999999999999999999999887777777888888988887653
|
| >d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=99.61 E-value=1.2e-16 Score=137.53 Aligned_cols=75 Identities=24% Similarity=0.306 Sum_probs=65.9
Q ss_pred CchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhc------ccchHHHHHHHHhccCc
Q 019713 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH------KWLEEGFTETIQKVRLV 321 (337)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~------~~~~~e~~~~v~~~g~~ 321 (337)
|.||++|++.+||+++|+++++|+. +||||||++|||+||+++|+|.|+.+++... .+..+++.+.++++|++
T Consensus 1 T~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~ 79 (170)
T d1llda2 1 TNLDSARLRFLIAQQTGVNVKNVHA-YIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYK 79 (170)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGEEC-CEEBSSSTTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCCCcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhH
Confidence 7899999999999999999999985 8999999999999999999999999876532 23457888999988876
Q ss_pred cc
Q 019713 322 DN 323 (337)
Q Consensus 322 ~~ 323 (337)
..
T Consensus 80 i~ 81 (170)
T d1llda2 80 II 81 (170)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.61 E-value=9.5e-17 Score=138.40 Aligned_cols=70 Identities=41% Similarity=0.662 Sum_probs=59.8
Q ss_pred cCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHH
Q 019713 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316 (337)
Q Consensus 247 gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~ 316 (337)
.|.||++|||++||+++|++|.+|++++||||||++|+|+||+++++|.|+.++..+..+..+++.+.++
T Consensus 1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG~s~vp~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~ 70 (173)
T d1y7ta2 1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQ 70 (173)
T ss_dssp CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecCccEEeeeeeeeEcCccHHHhcccccccchhhhhhhh
Confidence 4899999999999999999999999877899999999999999999999999988765544444444333
|
| >d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.60 E-value=1.1e-16 Score=139.28 Aligned_cols=77 Identities=43% Similarity=0.601 Sum_probs=65.9
Q ss_pred CchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhh----cccchHHHHHHHHhccCccc
Q 019713 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD----HKWLEEGFTETIQKVRLVDN 323 (337)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~----~~~~~~e~~~~v~~~g~~~~ 323 (337)
|+||++|+|++||+++||+|.+|++.+||||||++|||+||+++|+|+|+.+++.+ ..|..+++.+.++++|+...
T Consensus 1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG~s~vp~~S~a~v~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 80 (179)
T d5mdha2 1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVI 80 (179)
T ss_dssp CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCCCcccccchhceecCcchhhhhhhccccchhhHHHHHHHHHhccHhhh
Confidence 78999999999999999999999987788999999999999999999998776544 24556778888887776654
Q ss_pred c
Q 019713 324 F 324 (337)
Q Consensus 324 ~ 324 (337)
.
T Consensus 81 ~ 81 (179)
T d5mdha2 81 K 81 (179)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.59 E-value=3e-16 Score=134.98 Aligned_cols=75 Identities=24% Similarity=0.344 Sum_probs=64.5
Q ss_pred cCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhccc----chHHHHHHHHhccCcc
Q 019713 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW----LEEGFTETIQKVRLVD 322 (337)
Q Consensus 247 gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~----~~~e~~~~v~~~g~~~ 322 (337)
||.||++||+++||+++|++|.+|+. +||||||++|+|+||+++++|.|+.+++.+..+ ..+++.+.++.+|+..
T Consensus 1 GT~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~t~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (172)
T d1a5za2 1 GTVLDTARLRTLIAQHCGFSPRSVHV-YVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEI 79 (172)
T ss_dssp TTHHHHHHHHHHHHHHHTCCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHCcCHHHeEE-EEEecCCCCcccchhhcccCCcchhhhhhccccccHHHhhhhHHHHhccceeE
Confidence 79999999999999999999999984 999999999999999999999999998865433 2346677777776554
|
| >d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=99.59 E-value=4.1e-16 Score=134.00 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=64.4
Q ss_pred ecCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhccc-----chHHHHHHHHhccC
Q 019713 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW-----LEEGFTETIQKVRL 320 (337)
Q Consensus 246 ~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~-----~~~e~~~~v~~~g~ 320 (337)
+||.||++|++.+||+++|+++.+|+ ++||||||++|||+||+++|+|.|+.+++.+..| ..+++.+.+++++.
T Consensus 1 ~GT~LDs~R~~~~lA~~lgv~~~~V~-~~ViG~Hg~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (172)
T d1i0za2 1 SGCNLDSARFRYLMAEKLGIHPSSCH-GWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAY 79 (172)
T ss_dssp CTTHHHHHHHHHHHHHHHTSCGGGCB-CCEEBCSSTTCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhCcCHHHce-EEEEccCCCcccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceE
Confidence 58999999999999999999999997 5899999999999999999999999998866543 23556666666554
Q ss_pred cc
Q 019713 321 VD 322 (337)
Q Consensus 321 ~~ 322 (337)
..
T Consensus 80 ~~ 81 (172)
T d1i0za2 80 EV 81 (172)
T ss_dssp HH
T ss_pred Ee
Confidence 43
|
| >d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=99.57 E-value=8.2e-16 Score=132.67 Aligned_cols=63 Identities=29% Similarity=0.327 Sum_probs=56.5
Q ss_pred cCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHH
Q 019713 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEG 310 (337)
Q Consensus 247 gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e 310 (337)
|..||++|++++||+++|++|.+|+ ++||||||++|+|+||+++|+|.|+.+++.+..|...+
T Consensus 1 ~c~LDs~R~~~~lA~~l~v~~~~V~-~~ViG~Hg~t~vp~~S~~~i~g~~l~~~~~~~~~~~~~ 63 (174)
T d1pzga2 1 ACMLDSGRFRRYVADALSVSPRDVQ-ATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQ 63 (174)
T ss_dssp CHHHHHHHHHHHHHHHHTSCGGGEE-CCEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHH
T ss_pred CcccHHHHHHHHHHHHhCcCHHHcE-EEEEccCCCccccceeeeeECCEechhhccccchhhhh
Confidence 4579999999999999999999998 59999999999999999999999999988776654433
|
| >d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Aquaspirillum arcticum [TaxId: 87645]
Probab=99.57 E-value=5.3e-16 Score=133.30 Aligned_cols=73 Identities=38% Similarity=0.643 Sum_probs=64.2
Q ss_pred chhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCc
Q 019713 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLV 321 (337)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~ 321 (337)
+||++|||++||+++|++|++|++++||||||++++|+||+++++|.++.++..+..|..+++.+.++++++.
T Consensus 2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG~s~vp~~S~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (171)
T d1b8pa2 2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAA 74 (171)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHH
T ss_pred cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCCCcEEeeeecceeecccchhhhhhhcchhhhHHHHHHHHHHH
Confidence 6999999999999999999999988899999999999999999999999999887777666666666555443
|
| >d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=99.55 E-value=6.4e-16 Score=132.37 Aligned_cols=71 Identities=18% Similarity=0.324 Sum_probs=63.2
Q ss_pred chhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcc
Q 019713 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVD 322 (337)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~ 322 (337)
.||++||+++||+++|+++.+|+. +||||||++|+|+||+++++|+|+.+++.. +..+++.+.++++|+..
T Consensus 3 ~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~s~vp~~s~~~i~g~~~~~~~~~--~~~~~~~~~v~~~g~~i 73 (163)
T d1guza2 3 VLDAARFRSFIAMELGVSMQDINA-CVLGGHGDAMVPVVKYTTVAGIPISDLLPA--ETIDKLVERTRNGGAEI 73 (163)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEC-CEEECSGGGEEECGGGCEETTEEHHHHSCH--HHHHHHHHHHHTHHHHH
T ss_pred ccHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCCCcccCHhhcccCCccccccCCH--HHHHHHHHHHHHHHHHH
Confidence 699999999999999999999985 999999999999999999999999998754 34568888888877655
|
| >d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=99.55 E-value=7e-16 Score=132.59 Aligned_cols=74 Identities=28% Similarity=0.318 Sum_probs=60.8
Q ss_pred CchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcc-----cchHHHHHHHHhccCcc
Q 019713 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-----WLEEGFTETIQKVRLVD 322 (337)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~-----~~~~e~~~~v~~~g~~~ 322 (337)
|.||++|++++||+++|++|.+|+. +||||||++|+|+||+++|+|.|+.+++.+.. +..+++.+++++.|+..
T Consensus 1 T~LDs~R~~~~la~~lgv~~~~V~~-~ViG~Hg~t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (169)
T d1y6ja2 1 TVLDSIRFRYLLSEKLGVDVKNVHG-YIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATI 79 (169)
T ss_dssp THHHHHHHHHHHHTTTTCCTTTEEC-CEEBCSSSSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCcCHHHceE-EEEccCCCCCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Confidence 7899999999999999999999985 89999999999999999999999999987642 34567777777766543
|
| >d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=99.54 E-value=2.7e-15 Score=128.81 Aligned_cols=74 Identities=20% Similarity=0.311 Sum_probs=62.7
Q ss_pred CchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchH---HHHHHHHhccCcc
Q 019713 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE---GFTETIQKVRLVD 322 (337)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~---e~~~~v~~~g~~~ 322 (337)
|.||++||+.+||+++|++|.+|+. +||||||++|||+||+++++|.|+.+++.+..+..+ ++.+.++.++++.
T Consensus 1 T~LD~~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 77 (171)
T d1ez4a2 1 TSLDSSRLRVALGKQFNVDPRSVDA-YIMGEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDI 77 (171)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGEEC-CEESSSSSSCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHCcCHHHeEE-EEEccCCCcccccccccccCCccceeecccccccchhhhhheeehhhhhHHH
Confidence 7899999999999999999999985 999999999999999999999999998877655443 3455566555543
|
| >d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.53 E-value=3.4e-15 Score=127.40 Aligned_cols=71 Identities=23% Similarity=0.292 Sum_probs=59.3
Q ss_pred CchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccch----HHHHHHHHhcc
Q 019713 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLE----EGFTETIQKVR 319 (337)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~----~e~~~~v~~~g 319 (337)
|.||++||+.+||+++|+++.+|+ ++||||||++|+|+||+++++|.++.+++.+..+.. +++.+.++..+
T Consensus 1 T~LDs~R~~~~lA~~l~v~~~~V~-~~ViG~Hg~~~vp~~s~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 75 (168)
T d1ldna2 1 TILDTARFRFLLGEYFSVAPQNVH-AYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAA 75 (168)
T ss_dssp THHHHHHHHHHHHHHHTSCGGGEE-EEEEBCSSTTCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCcCHHHeE-EEEEcCCCCccccchhhcccCCcchhhhhhhhhhhhccchhhhhhhhhhhH
Confidence 789999999999999999999998 599999999999999999999999999876654433 34444444443
|
| >d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Dogfish (Squalus acanthias) [TaxId: 7797]
Probab=99.51 E-value=4.1e-15 Score=127.15 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=53.8
Q ss_pred ecCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhh
Q 019713 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD 303 (337)
Q Consensus 246 ~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~ 303 (337)
+||.||++||+++||+++|+++.+|+. +||||||++|+|+||+++++|.|+.++...
T Consensus 1 sGT~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~v~~~s~~~i~~~~~~~~~~~ 57 (169)
T d1ldma2 1 SGCNLDSARFRYLMGERLGVHSCSCHG-WVIGEHGDSVPSVWSGMNVASIKLHPLDGT 57 (169)
T ss_dssp CTTHHHHHHHHHHHHHHHTSCGGGCBC-CBCBCSSTTCCBCGGGCEETTEESHHHHSS
T ss_pred CCchHHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCccchhhhhhcccCCcchHHhhcc
Confidence 589999999999999999999999996 899999999999999999999999988654
|
| >d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=3.1e-15 Score=127.99 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=60.2
Q ss_pred ecCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhccc-----chHHHHHHHHhcc
Q 019713 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW-----LEEGFTETIQKVR 319 (337)
Q Consensus 246 ~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~-----~~~e~~~~v~~~g 319 (337)
+||.||++|++++||+++|++|.+|+. +||||||++|+|+||+++|+|.|+.+++.+..+ ..+++.+..+.++
T Consensus 1 tGT~LD~~R~~~~vA~~l~v~~~~V~~-~ViG~Hs~~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (172)
T d2ldxa2 1 SGCNLDSARFRYLIGEKLGVNPTSCHG-WVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGG 78 (172)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCTTSSCC-CEEECSSSCEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhCcCHHHcEE-EEEcCCCCccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhccce
Confidence 589999999999999999999999984 899999999999999999999999987755321 2334555555443
|
| >d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=99.50 E-value=2e-15 Score=129.80 Aligned_cols=74 Identities=26% Similarity=0.302 Sum_probs=62.6
Q ss_pred CchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccc----hHHHHHHHHhccCcc
Q 019713 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKVRLVD 322 (337)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~----~~e~~~~v~~~g~~~ 322 (337)
|.||++|++++||+++|+++.+|+ ++||||||++|+|+||+++++|.|+.+++.+..|. .+++.+.++.+|++.
T Consensus 1 T~LDs~R~~~~lA~~l~v~~~~V~-~~ViG~Hg~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i 78 (172)
T d1llca2 1 TSLDTARFRQSIAEMVNVDARSVH-AYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEI 78 (172)
T ss_dssp THHHHHHHHHHHHHHSCCCTTSCE-EEEEBSSSSSCEEEEEEEESTTCCSSSSSSCSCSSSSSSSSTTTTTTGGGTTTT
T ss_pred CchHHHHHHHHHHHHhCcCHHHeE-EEEEcCCCCcceeeeeccccCCccHHHHHhhhhccchhHHHHHHHhhcchHHHH
Confidence 789999999999999999999998 49999999999999999999999999987654432 245566666666654
|
| >d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=99.48 E-value=6e-15 Score=126.22 Aligned_cols=71 Identities=28% Similarity=0.277 Sum_probs=63.5
Q ss_pred chhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcc
Q 019713 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVD 322 (337)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~ 322 (337)
.||++||+++||+++|++|.+|+. +||||||++|||+||+++++|.|+.+++.+ +..+++.+.++++|++.
T Consensus 3 ~LD~~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~v~~~s~~~i~g~~~~~~~~~--~~~~~~~~~v~~~g~~i 73 (164)
T d1uxja2 3 VLDAARYRTFIAMEAGVSVKDVQA-MLMGGHGDEMVPLPRFSTISGIPVSEFIAP--DRLAQIVERTRKGGGEI 73 (164)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEE-CCEECSGGGEECCGGGEEETTEEGGGTSCH--HHHHHHHHHHHTHHHHH
T ss_pred ccHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCCceeeeeeeeecCCCchhhccch--hhHHHHHHHHHHHHHHH
Confidence 599999999999999999999985 899999999999999999999999988653 45578888888888765
|
| >d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.45 E-value=2.1e-14 Score=122.75 Aligned_cols=73 Identities=23% Similarity=0.264 Sum_probs=62.5
Q ss_pred chhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccch---HHHHHHHHhccCcc
Q 019713 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLE---EGFTETIQKVRLVD 322 (337)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~---~e~~~~v~~~g~~~ 322 (337)
.||++|++++||+++|++|++|+. +||||||++|+|+||+++++|.|+.+...+..|.. +++.+.++++|+..
T Consensus 2 ~LD~~R~~~~la~~lgv~~~~V~~-~ViG~Hg~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 77 (165)
T d1t2da2 2 VLDTSRLKYYISQKLNVCPRDVNA-HIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEI 77 (165)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHH
T ss_pred ccHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCCCcccceeecccCCcchhhhcccchhhhhhhhhhhhhhhhhhHHH
Confidence 499999999999999999999985 89999999999999999999999999887766643 34566666666554
|
| >d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=99.44 E-value=2.1e-14 Score=121.37 Aligned_cols=52 Identities=29% Similarity=0.355 Sum_probs=48.8
Q ss_pred cCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhh
Q 019713 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKE 299 (337)
Q Consensus 247 gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e 299 (337)
||.||++|++++||+++|+++++|++ +||||||++|+|+||+++++|.+...
T Consensus 2 Gt~LD~~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~v~~~s~~~v~~~~~~~ 53 (161)
T d1o6za2 2 GGRLDSARFRYVLSEEFDAPVQNVEG-TILGEHGDAQVPVFSKVSVDGTDPEF 53 (161)
T ss_dssp CHHHHHHHHHHHHHHHHTCCGGGEEC-CEEECSSTTEEECGGGCEETTBCCCC
T ss_pred CchHHHHHHHHHHHHHHCcCHHHeEE-EEEeCCCCceeeehhhhccccccccc
Confidence 68999999999999999999999996 89999999999999999999988653
|
| >d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.20 E-value=2.4e-12 Score=109.95 Aligned_cols=48 Identities=27% Similarity=0.187 Sum_probs=42.5
Q ss_pred CchhHHHHHHHHHHHhCCCcccccceEEEecc-CCCcccccccceEcCee
Q 019713 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLP 296 (337)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnH-G~t~vp~~S~a~V~G~p 296 (337)
|.||++|++++||+++|++|.+|++ +|+|+| |++|+||||++.+++..
T Consensus 2 T~LDs~R~~~~la~~l~v~~~~V~~-~ViGeHg~~t~vp~~s~~~~~~~~ 50 (169)
T d1mlda2 2 TTLDIVRANAFVAELKGLDPARVSV-PVIGGHAGKTIIPLISQCTPKVDF 50 (169)
T ss_dssp CHHHHHHHHHHHHHHTTCCGGGCBC-CEEECSSGGGEEECGGGCBSCCCC
T ss_pred cccHHHHHHHHHHHHHCcCHHHeeE-EEEEcCCCcceeehhhhhccCCCC
Confidence 7899999999999999999999997 889988 57888888888877644
|
| >d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.20 E-value=2.4e-12 Score=109.02 Aligned_cols=49 Identities=22% Similarity=0.131 Sum_probs=42.0
Q ss_pred cCchhHHHHHHHHHHHhCCCcccc-cceEEEeccCCCcccccccceEcCeehhh
Q 019713 247 LTRLDENRAKCQLALKAGVFYDKV-SNMTIWGNHSTTQVPDFLNARINGLPVKE 299 (337)
Q Consensus 247 gT~LDs~R~~~~lA~~lgv~~~~V-~~v~V~GnHG~t~vp~~S~a~V~G~pl~e 299 (337)
||.|||+|||+.|++.. +.++ + .||+|||||+|||+||.++++|.+..+
T Consensus 1 Gt~LDsaR~r~~l~~~~---~~~v~~-a~ViGeHGds~vp~~S~~~i~g~~~~~ 50 (152)
T d1ojua2 1 GNQLDSQRLKERLYNAG---ARNIRR-AWIIGEHGDSMFVAKSLADFDGEVDWE 50 (152)
T ss_dssp SHHHHHHHHHHHHHHTT---CBSCCC-CCEEBCSSTTCEECGGGCCCBSCCCHH
T ss_pred CCccHHHHHHHHHHccC---CCCcce-eEEEecCCCccccccccccccCccchh
Confidence 68999999999998765 4455 5 499999999999999999999987554
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=9.4e-10 Score=95.77 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=96.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhh----h---cc------------CCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED----S---LF------------PLL 157 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d----~---~~------------~~~ 157 (337)
.||+|||| |.||+.+|..++..|+ +|.+ +|.+ ++.++.....+++ . .. ..+
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~G~-----~V~l--~D~~--~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 74 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAATGH-----TVVL--VDQT--EDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTL 74 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--ECSC--HHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred EEEEEECc-CHHHHHHHHHHHhCCC-----cEEE--EECC--hHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHH
Confidence 49999995 9999999999999886 3555 4443 2222211111110 0 00 112
Q ss_pred ccEEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHH----
Q 019713 158 REVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALIC---- 232 (337)
Q Consensus 158 ~~v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~---- 232 (337)
.++..+++..++++|||+|+.+. .+|.++.+++.+.|++++.+++ |++||.... ++.++
T Consensus 75 ~~i~~~~d~~~a~~~ad~ViEav--------------~E~l~~K~~v~~~l~~~~~~~~--ilasnTS~l~i~~la~~~~ 138 (192)
T d1f0ya2 75 STIATSTDAASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEHT--IFASNTSSLQITSIANATT 138 (192)
T ss_dssp HTEEEESCHHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTTC--EEEECCSSSCHHHHHTTSS
T ss_pred hhccccchhHhhhcccceehhhc--------------ccchhHHHHHHHHHhhhcccCc--eeeccCcccccchhhhhcc
Confidence 35777777778899999999985 4678999999999999988887 478887644 44444
Q ss_pred -------HHHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCccccc
Q 019713 233 -------LKNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYDKVS 271 (337)
Q Consensus 233 -------~k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~~V~ 271 (337)
.+++ +.|. +++ |..|.-++...-..+++.+|..|--|+
T Consensus 139 ~p~r~ig~Hff-nP~~~~~lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v~ 189 (192)
T d1f0ya2 139 RQDRFAGLHFF-NPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCK 189 (192)
T ss_dssp CGGGEEEEEEC-SSTTTCCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CHhHEEeeccc-cccCcccEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEee
Confidence 2222 2222 344 455776676666667788887774443
|
| >d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=7.4e-11 Score=100.13 Aligned_cols=66 Identities=23% Similarity=0.137 Sum_probs=47.1
Q ss_pred CchhHHHHHHHHHHHhCCCcccccceEEEeccCC-CcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcc
Q 019713 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVD 322 (337)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~-t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~ 322 (337)
|.||++||+++||+++|++|++|++ +|+|+||+ +++||+|++...+.+ .+..+++.+.+|++|++.
T Consensus 2 T~LDs~R~~~~iA~~l~v~~~~V~~-~ViGghg~~~~~p~~s~~~~~~~~--------~~~~~~l~~~v~~~g~~i 68 (167)
T d2cmda2 2 TTLDIIRSNTFVAELKGKQPGEVEV-PVIGGHSGVTILPLLSQVPGVSFT--------EQEVADLTKRIQNAGTEV 68 (167)
T ss_dssp CHHHHHHHHHHHHHHHTCCGGGCCC-CEEECSSTTTEEECGGGCTTCCCC--------HHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCcCHHHeEE-EEEEcCCCceEeeecccccCCCCc--------HHHHHHHHHHHHhhhhhh
Confidence 7899999999999999999999997 78888865 455666665433322 233445556666555444
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=98.95 E-value=2.1e-09 Score=92.92 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=96.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHh----HHHhHhhhcc----------CCccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG----VAMELEDSLF----------PLLRE 159 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g----~a~DL~d~~~----------~~~~~ 159 (337)
++..||+|||| |.||..+|..++..|+ .|.++ |.+ ++.++. ....+.+... ....+
T Consensus 2 ~~I~~vaViGa-G~mG~~iA~~~a~~G~-----~V~l~--D~~--~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 71 (186)
T d1wdka3 2 KDVKQAAVLGA-GIMGGGIAYQSASKGT-----PILMK--DIN--EHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNG 71 (186)
T ss_dssp CCCSSEEEECC-HHHHHHHHHHHHHTTC-----CEEEE--CSS--HHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhCCC-----eEEEE--ECC--HHHHhhhhhhhhhhHHhhhcccccchhhhhhhhce
Confidence 34568999995 9999999999999886 36653 433 232221 1111111110 01234
Q ss_pred EEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHHH-----
Q 019713 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALICL----- 233 (337)
Q Consensus 160 v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~~----- 233 (337)
+..+ .+++++.|||+||.+. .+|.++.+++.+.|++++.++++ ++||.... ++.++.
T Consensus 72 i~~~-~~~~~~~~adlViEav--------------~E~l~~K~~lf~~l~~~~~~~~I--iaSnTS~l~i~~la~~~~~p 134 (186)
T d1wdka3 72 IRPT-LSYGDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVREDAI--LASNTSTISISLLAKALKRP 134 (186)
T ss_dssp EEEE-SSSTTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTCE--EEECCSSSCHHHHGGGCSCG
T ss_pred eecc-cccccccccceeeeee--------------cchHHHHHHHHHHHHhhcCCCee--EEeccccccHHHHHHhccCc
Confidence 5554 4678899999999975 45689999999999999888874 78887655 344331
Q ss_pred ------HHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCccccc
Q 019713 234 ------KNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYDKVS 271 (337)
Q Consensus 234 ------k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~~V~ 271 (337)
+++ +.|. +++ |..|.-++......+++.+|..|--|+
T Consensus 135 ~r~~g~Hf~-nP~~~~~lVEiv~~~~T~~~~~~~~~~~~~~lgk~pv~v~ 183 (186)
T d1wdka3 135 ENFVGMHFF-NPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVN 183 (186)
T ss_dssp GGEEEEECC-SSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hheEeeccc-cCcccCCeEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 222 1221 344 455776676677778888887774443
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.31 E-value=1.3e-06 Score=72.86 Aligned_cols=101 Identities=14% Similarity=0.022 Sum_probs=64.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhh-c-cCC----cccEEEecCccccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS-L-FPL----LREVKIGINPYELF 170 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~-~-~~~----~~~v~i~t~~~eal 170 (337)
+||+|||| |.+|..+|..|+..|. .|.+ + ++++++++.... .... . .+. ......+++..+++
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~G~-----~V~~--~--~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 70 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALKGQ-----SVLA--W--DIDAQRIKEIQD-RGAIIAEGPGLAGTAHPDLLTSDIGLAV 70 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHH-HTSEEEESSSCCEEECCSEEESCHHHHH
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCC-----EEEE--E--ECCHHHHHHHHH-cCCCchhhhhhhhhhhhhhhhhhhHhHh
Confidence 69999995 9999999999999885 2554 3 444455443211 1100 0 010 11234456778889
Q ss_pred CCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
++||+||++... .-.+++.++|+.+..++.+|+...|.
T Consensus 71 ~~aD~iii~v~~----------------~~~~~~~~~i~~~l~~~~~iv~~~g~ 108 (184)
T d1bg6a2 71 KDADVILIVVPA----------------IHHASIAANIASYISEGQLIILNPGA 108 (184)
T ss_dssp TTCSEEEECSCG----------------GGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred cCCCEEEEEEch----------------hHHHHHHHHhhhccCCCCEEEEeCCC
Confidence 999999997521 12456677777776778776665554
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=98.29 E-value=4.2e-06 Score=69.41 Aligned_cols=93 Identities=24% Similarity=0.192 Sum_probs=60.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+|||+ |.||+++|..|...+. .|.. + |++++.++. +.+.. . +....++.+++++||+|
T Consensus 1 MkI~iIG~-G~mG~~lA~~l~~~g~-----~V~~--~--d~~~~~~~~-a~~~~-----~---~~~~~~~~~~~~~~DiI 61 (165)
T d2f1ka2 1 MKIGVVGL-GLIGASLAGDLRRRGH-----YLIG--V--SRQQSTCEK-AVERQ-----L---VDEAGQDLSLLQTAKII 61 (165)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHH-HHHTT-----S---CSEEESCGGGGTTCSEE
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCC-----EEEE--E--ECCchHHHH-HHHhh-----c---cceeeeecccccccccc
Confidence 69999995 9999999999988775 2443 3 455454442 22111 0 11123567899999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
|++. | ...+.++.+.+..+..++++|+.+++-
T Consensus 62 ilav--p--------------~~~~~~vl~~l~~~l~~~~iv~~~~s~ 93 (165)
T d2f1ka2 62 FLCT--P--------------IQLILPTLEKLIPHLSPTAIVTDVASV 93 (165)
T ss_dssp EECS--C--------------HHHHHHHHHHHGGGSCTTCEEEECCSC
T ss_pred cccC--c--------------Hhhhhhhhhhhhhhcccccceeecccc
Confidence 9874 2 234555666676666778777766653
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.12 E-value=3.1e-06 Score=71.83 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=61.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccC--C-cccEEEecCcccccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--L-LREVKIGINPYELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~--~-~~~v~i~t~~~eal~dA 173 (337)
|||+|||| |.+|.++|..|+..+. .|.|+ ..+.+++..+.....-.+..++ + ...+..+++..+++++|
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~-----~V~l~--~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a 72 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGN-----EVRIW--GTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENA 72 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCC-----EEEEE--CCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-----EEEEE--EecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhcc
Confidence 79999995 9999999999998764 35553 3333444443322111111111 1 12344455667889999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
|+||++. | ...++++.+++..+- ++..+++.+
T Consensus 73 d~Ii~av--p--------------s~~~~~~~~~l~~~l-~~~~ii~~t 104 (180)
T d1txga2 73 EVVLLGV--S--------------TDGVLPVMSRILPYL-KDQYIVLIS 104 (180)
T ss_dssp SEEEECS--C--------------GGGHHHHHHHHTTTC-CSCEEEECC
T ss_pred chhhccc--c--------------hhhhHHHHHhhcccc-ccceecccc
Confidence 9999974 2 234567777777774 444444443
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=98.07 E-value=2.7e-06 Score=73.11 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=52.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc----cCCcccEEEecCccc
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYE 168 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~----~~~~~~v~i~t~~~e 168 (337)
+..|.||+|||| |..|.++|..|+..+. .|.|. + ++++.++.....=++.. ..+..++.++++..+
T Consensus 4 ~~~m~KI~ViGa-G~wGtAlA~~La~~g~-----~V~l~--~--r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~ 73 (189)
T d1n1ea2 4 LLYLNKAVVFGS-GAFGTALAMVLSKKCR-----EVCVW--H--MNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEK 73 (189)
T ss_dssp CCCEEEEEEECC-SHHHHHHHHHHHTTEE-----EEEEE--C--SCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHH
T ss_pred cceeceEEEECC-CHHHHHHHHHHHHcCC-----eEEEE--E--ecHHHHHHHhhcccccccccccccccccccchhhhh
Confidence 355679999995 9999999999987663 36553 3 34444443211111111 123357888888889
Q ss_pred ccCCCcEEEEec
Q 019713 169 LFEDAEWALLIG 180 (337)
Q Consensus 169 al~dADvVIita 180 (337)
++++||+||++.
T Consensus 74 a~~~ad~iiiav 85 (189)
T d1n1ea2 74 AYNGAEIILFVI 85 (189)
T ss_dssp HHTTCSCEEECS
T ss_pred ccCCCCEEEEcC
Confidence 999999999974
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.05 E-value=9.8e-06 Score=69.75 Aligned_cols=115 Identities=16% Similarity=0.130 Sum_probs=67.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHH-----------h-HhhhccCCcccEEEec
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-----------E-LEDSLFPLLREVKIGI 164 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~-----------D-L~d~~~~~~~~v~i~t 164 (337)
|||+||| +|.||..+|..|+..|. .|. .+| .++++.+.+.- + +.+.. ...+...++
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~-----~V~--g~D--~n~~~i~~ln~g~~p~~e~~~~~~l~~~~--~~~~~~~~~ 68 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGH-----EVI--GVD--VSSTKIDLINQGKSPIVEPGLEALLQQGR--QTGRLSGTT 68 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-----EEE--EEC--SCHHHHHHHHTTCCSSCCTTHHHHHHHHH--HTTCEEEES
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCC-----cEE--EEe--CCHHHHHHhcccCCcccchhhhhhhhhhh--cccccccCC
Confidence 7999999 59999999999998875 243 344 44444443210 0 11100 113466777
Q ss_pred CcccccCCCcEEEEecccCCCC-CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-CCchh
Q 019713 165 NPYELFEDAEWALLIGAKPRGP-GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNT 227 (337)
Q Consensus 165 ~~~eal~dADvVIitag~prk~-g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt-NPvd~ 227 (337)
+..+++++||+++++.+.|... |......+. .+.+++.+.++.. .++..||+-| -|..+
T Consensus 69 ~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~---~~~~~i~~~~~~~-~~~~liii~STv~pGt 129 (202)
T d1mv8a2 69 DFKKAVLDSDVSFICVGTPSKKNGDLDLGYIE---TVCREIGFAIREK-SERHTVVVRSTVLPGT 129 (202)
T ss_dssp CHHHHHHTCSEEEECCCCCBCTTSSBCCHHHH---HHHHHHHHHHTTC-CSCCEEEECSCCCTTH
T ss_pred CHHHHHhhCCEEEEecCccccccccccchhhh---hhhhhhhheeecc-cCCcceeeccccCCcc
Confidence 7788899999999998887433 222222222 3344555555554 5666655544 34433
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.98 E-value=2e-06 Score=70.64 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=63.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+|||| |.||+.++..|+..|. .|.+. +. +.+..+.. ........ .....+..+..+++.++|+|
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~-----~V~~~--~r--~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~D~i 67 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGH-----EVQGW--LR--VPQPYCSV--NLVETDGS-IFNESLTANDPDFLATSDLL 67 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEEE--CS--SCCSEEEE--EEECTTSC-EEEEEEEESCHHHHHTCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC-----ceEEE--Ec--CHHHhhhh--ccccCCcc-ccccccccchhhhhcccceE
Confidence 79999995 9999999999999775 35553 22 22222211 01111101 11223445677889999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
|++...+ -..+..+.+..+..++..|+.+.|=++.
T Consensus 68 ii~vka~----------------~~~~~~~~l~~~~~~~~~Iv~~qNG~~~ 102 (167)
T d1ks9a2 68 LVTLKAW----------------QVSDAVKSLASTLPVTTPILLIHNGMGT 102 (167)
T ss_dssp EECSCGG----------------GHHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred EEeeccc----------------chHHHHHhhccccCcccEEeeccCcccH
Confidence 9985221 1345666666665678888999886544
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=3.3e-05 Score=63.72 Aligned_cols=97 Identities=12% Similarity=0.090 Sum_probs=56.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|+||+|+||+|.||+-+...|....-+.. ..++++...... +...+... .. .......+.++++++|+
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~---~~l~~~~ss~s~----g~~~~~~~---~~--~~~~~~~~~~~~~~~Di 68 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDA---IRPVFFSTSQLG----QAAPSFGG---TT--GTLQDAFDLEALKALDI 68 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGG---SEEEEEESSSTT----SBCCGGGT---CC--CBCEETTCHHHHHTCSE
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCe---eEEEEeeccccc----cccccccC---Cc--eeeecccchhhhhcCcE
Confidence 56999999999999999987766544432 445544333221 11111111 10 11122345678999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|+++.+ ..+-+++.+.+.+. ..+++ |+.|
T Consensus 69 vF~a~~----------------~~~s~~~~~~~~~~-g~~~~--VID~ 97 (146)
T d1t4ba1 69 IVTCQG----------------GDYTNEIYPKLRES-GWQGY--WIDA 97 (146)
T ss_dssp EEECSC----------------HHHHHHHHHHHHHT-TCCCE--EEEC
T ss_pred EEEecC----------------chHHHHhhHHHHhc-CCCee--cccC
Confidence 999863 35566777777764 33334 4444
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.83 E-value=0.00017 Score=59.41 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=60.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|.||+|||+ |.||+++|..|...+.. ..+.. .|++++.++. +.+.. . .....+........++|+
T Consensus 1 Mk~I~IIG~-G~mG~sla~~L~~~g~~-----~~I~~--~D~~~~~~~~-a~~~~-----~-~~~~~~~~~~~~~~~~dl 65 (171)
T d2g5ca2 1 MQNVLIVGV-GFMGGSFAKSLRRSGFK-----GKIYG--YDINPESISK-AVDLG-----I-IDEGTTSIAKVEDFSPDF 65 (171)
T ss_dssp CCEEEEESC-SHHHHHHHHHHHHTTCC-----SEEEE--ECSCHHHHHH-HHHTT-----S-CSEEESCGGGGGGTCCSE
T ss_pred CCEEEEEcc-CHHHHHHHHHHHhcCCC-----eEEEE--EECChHHHHH-HHHhh-----c-chhhhhhhhhhhcccccc
Confidence 457999995 99999999999988763 22333 3555555442 22111 1 111222234455678999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
||++.- .+.+.++.+.|..+.+++++|+-++.-
T Consensus 66 Iila~p----------------~~~~~~vl~~l~~~~~~~~ii~d~~s~ 98 (171)
T d2g5ca2 66 VMLSSP----------------VRTFREIAKKLSYILSEDATVTDQGSV 98 (171)
T ss_dssp EEECSC----------------HHHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred ccccCC----------------chhhhhhhhhhhccccccccccccccc
Confidence 999751 233455556666665778887777664
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.79 E-value=1.7e-05 Score=65.62 Aligned_cols=64 Identities=11% Similarity=0.210 Sum_probs=45.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+||| .|.||+.+|..|+..+. .|.. + |++.++++.. .+. ......+..+.++++|+|
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~-----~V~~--~--d~~~~~~~~~----~~~------~~~~~~~~~e~~~~~d~i 60 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGY-----SLVV--S--DRNPEAIADV----IAA------GAETASTAKAIAEQCDVI 60 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHH----HHT------TCEECSSHHHHHHHCSEE
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCC-----eEEE--E--eCCcchhHHH----HHh------hhhhcccHHHHHhCCCeE
Confidence 6999999 69999999999999876 2443 3 4555555432 211 123334567889999999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
+++.
T Consensus 61 i~~v 64 (161)
T d1vpda2 61 ITML 64 (161)
T ss_dssp EECC
T ss_pred EEEc
Confidence 9874
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=0.00018 Score=60.96 Aligned_cols=104 Identities=15% Similarity=0.123 Sum_probs=59.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-----Ccccc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-----NPYEL 169 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-----~~~ea 169 (337)
.|+||.|+||+|.+|++++..|...+. .|.+ + .++.+++... . +...++...+ +..++
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~-----~V~~--~--~R~~~~~~~~----~----~~~~~~~~gD~~d~~~l~~a 64 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGY-----EVTV--L--VRDSSRLPSE----G----PRPAHVVVGDVLQAADVDKT 64 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE--E--ESCGGGSCSS----S----CCCSEEEESCTTSHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcC-----EEEE--E--EcChhhcccc----c----ccccccccccccchhhHHHH
Confidence 467999999999999999999988774 2443 2 3344443211 0 1111222211 12467
Q ss_pred cCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 170 l~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++++|+||.+.|... +.. .. ..+....+.+.+.+++...+ ++|.++
T Consensus 65 l~~~d~vi~~~g~~~-~~~-~~---~~~~~~~~~l~~aa~~~~v~--r~i~~s 110 (205)
T d1hdoa_ 65 VAGQDAVIVLLGTRN-DLS-PT---TVMSEGARNIVAAMKAHGVD--KVVACT 110 (205)
T ss_dssp HTTCSEEEECCCCTT-CCS-CC---CHHHHHHHHHHHHHHHHTCC--EEEEEC
T ss_pred hcCCCEEEEEeccCC-chh-hh---hhhHHHHHHHHHHHHhcCCC--eEEEEe
Confidence 999999998876432 111 11 12234455566677775323 556655
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=97.56 E-value=5.2e-05 Score=62.03 Aligned_cols=65 Identities=18% Similarity=0.187 Sum_probs=44.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||++||+ |+||.+++..|...+-. .+.+ .|++.++++..+.+. .+... ++.++++++|+|
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~~----~i~v----~~r~~~~~~~l~~~~---------~~~~~-~~~~~v~~~Div 61 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGGY----RIYI----ANRGAEKRERLEKEL---------GVETS-ATLPELHSDDVL 61 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSC----EEEE----ECSSHHHHHHHHHHT---------CCEEE-SSCCCCCTTSEE
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCC----cEEE----EeCChhHHHHhhhhc---------ccccc-cccccccccceE
Confidence 69999995 99999999988776521 2443 366666665443211 13343 345678999999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
|++.
T Consensus 62 ~lav 65 (152)
T d1yqga2 62 ILAV 65 (152)
T ss_dssp EECS
T ss_pred EEec
Confidence 9875
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=8.9e-05 Score=64.28 Aligned_cols=108 Identities=11% Similarity=0.165 Sum_probs=62.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-----cCcccccC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-----INPYELFE 171 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-----t~~~eal~ 171 (337)
+||.|+||+|++|++++..|+..+.+.+ |.+ + .++........ .... ...+. .+..++++
T Consensus 15 k~IlItGaTG~iG~~l~~~Ll~~g~~~~---v~~--~--~R~~~~~~~~~--~~~i------~~~~~D~~~~~~~~~~~~ 79 (232)
T d2bkaa1 15 KSVFILGASGETGRVLLKEILEQGLFSK---VTL--I--GRRKLTFDEEA--YKNV------NQEVVDFEKLDDYASAFQ 79 (232)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHHTCCSE---EEE--E--ESSCCCCCSGG--GGGC------EEEECCGGGGGGGGGGGS
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCE---EEE--E--ecChhhhcccc--ccee------eeeeeccccccccccccc
Confidence 4899999999999999999998886532 332 2 22211111000 0000 01110 12357789
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++|+|+.++|... ......+....|......+++...+. ... .++.+|
T Consensus 80 ~~d~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~-~v~-~fi~~S 127 (232)
T d2bkaa1 80 GHDVGFCCLGTTR-GKAGAEGFVRVDRDYVLKSAELAKAG-GCK-HFNLLS 127 (232)
T ss_dssp SCSEEEECCCCCH-HHHHHHHHHHHHTHHHHHHHHHHHHT-TCC-EEEEEC
T ss_pred ccccccccccccc-cccchhhhhhhcccccceeeeccccc-Ccc-ccccCC
Confidence 9999999876431 11223445566777777888877764 333 355555
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.44 E-value=0.00017 Score=59.41 Aligned_cols=94 Identities=12% Similarity=0.081 Sum_probs=54.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+||||+|.+|+.+...|....-+. .+.+..+..... .|...++.. .........+.+.++++|+|
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p---~~~i~~~ss~~~----~gk~~~~~~-----~~~~~~~~~~~~~~~~~Dvv 68 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFD---LIEPVFFSTSQI----GVPAPNFGK-----DAGMLHDAFDIESLKQLDAV 68 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGG---GSEEEEEESSCC----SSBCCCSSS-----CCCBCEETTCHHHHTTCSEE
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCC---ceEEEEeccccc----cccccccCC-----cceeeecccchhhhccccEE
Confidence 699999999999999998776543322 244444433221 122111110 01112233456779999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEE
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVI 219 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivI 219 (337)
+++.+ -.+-+++.+.+.+. ..+++||
T Consensus 69 F~alp----------------~~~s~~~~~~l~~~-g~~~~VI 94 (147)
T d1mb4a1 69 ITCQG----------------GSYTEKVYPALRQA-GWKGYWI 94 (147)
T ss_dssp EECSC----------------HHHHHHHHHHHHHT-TCCSEEE
T ss_pred EEecC----------------chHHHHHhHHHHHc-CCceEEE
Confidence 99852 24456777777775 4444443
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.40 E-value=0.00022 Score=58.83 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=45.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|+||+||| .|.||+.+|..|+..+. .|.. + |++.++.+.. ... ......+..+.++++|+
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~-----~v~~--~--d~~~~~~~~~----~~~------~~~~~~~~~e~~~~~di 60 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGY-----LLNV--F--DLVQSAVDGL----VAA------GASAARSARDAVQGADV 60 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE--E--CSSHHHHHHH----HHT------TCEECSSHHHHHTSCSE
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCC-----eEEE--E--ECchhhhhhh----hhh------hccccchhhhhccccCe
Confidence 57999999 69999999999999875 2443 3 4555554432 211 12233456789999999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
|+++.
T Consensus 61 ii~~v 65 (162)
T d3cuma2 61 VISML 65 (162)
T ss_dssp EEECC
T ss_pred eeecc
Confidence 98874
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.35 E-value=7.1e-05 Score=61.46 Aligned_cols=65 Identities=18% Similarity=0.306 Sum_probs=43.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+||| +|++|++++..|...+. .+.+ .+++.++++..+..+. +....+..+.++++|+|
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~-----~i~v----~~r~~~~~~~l~~~~g---------~~~~~~~~~~~~~~dvI 61 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPH-----ELII----SGSSLERSKEIAEQLA---------LPYAMSHQDLIDQVDLV 61 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSC-----EEEE----ECSSHHHHHHHHHHHT---------CCBCSSHHHHHHTCSEE
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCC-----eEEE----EcChHHhHHhhccccc---------eeeechhhhhhhcccee
Confidence 6999999 59999999999876542 2443 2455566554332221 22334566888999999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
+++.
T Consensus 62 ilav 65 (152)
T d2ahra2 62 ILGI 65 (152)
T ss_dssp EECS
T ss_pred eeec
Confidence 9875
|
| >d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=97.31 E-value=5.2e-05 Score=67.83 Aligned_cols=75 Identities=21% Similarity=0.114 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhCCCcccccceEEEe-ccCCCcccccccceEcCeehhhhhhhc-------ccchHHHHHHHHhccCcccc
Q 019713 253 NRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKDH-------KWLEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~v~V~G-nHG~t~vp~~S~a~V~G~pl~e~i~~~-------~~~~~e~~~~v~~~g~~~~~ 324 (337)
.-+..+||+.+|++.++|+. .+.| || +.|+.+++++|+++.+.+.+. .+...--.+..+..|..|+.
T Consensus 4 i~~~~~la~~lg~~~~~v~~-~~~GlNH----~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~ 78 (253)
T d1up7a2 4 INFIREIAEMFSARLEDVFL-KYYGLNH----LSFIEKVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNP 78 (253)
T ss_dssp HHHHHHHHHHTTCCGGGEEE-EEEEETT----EEEEEEEEETTEECHHHHHHHHTTC---CCTTSCCHHHHHHHCSEECG
T ss_pred HHHHHHHHHHhCCCHHHcEE-EEEEECC----hhheEeeEECCEechHHHHHHHHHhccCCccccCcHHHHHhcCeeEcc
Confidence 35688999999999999994 7899 99 999999999999998755331 11110012456778999999
Q ss_pred eeheeeee
Q 019713 325 TLILFVMN 332 (337)
Q Consensus 325 ~l~~~~~~ 332 (337)
||.|||+.
T Consensus 79 Yl~Yy~~~ 86 (253)
T d1up7a2 79 YLRYYLME 86 (253)
T ss_dssp GGHHHHTH
T ss_pred cchhhcCc
Confidence 99999874
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.29 E-value=0.00035 Score=58.96 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=58.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHH--------hHhhhccCCcccEEEecCccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM--------ELEDSLFPLLREVKIGINPYE 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~--------DL~d~~~~~~~~v~i~t~~~e 168 (337)
|||+||| .|.||..+|..++ .+. .|. .+|+ ++++.+.+.- ++++.......+....++...
T Consensus 1 MkI~ViG-lG~vGl~~a~~~a-~g~-----~V~--g~Di--n~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~ 69 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLLS-LQN-----EVT--IVDI--LPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKA 69 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHHT-TTS-----EEE--EECS--CHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHH
T ss_pred CEEEEEC-CChhHHHHHHHHH-CCC-----cEE--EEEC--CHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhh
Confidence 7999999 5999999997665 343 243 3344 4444432110 111111011124555667778
Q ss_pred ccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 al~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+..++|+++++...|.....+-.+ ...+....+.+... .++..+++-|.
T Consensus 70 ~~~~~~ii~v~vpt~~~~~~~~~~-----~~~v~~~~~~~~~~-~~~~~iii~St 118 (196)
T d1dlja2 70 AYKEAELVIIATPTNYNSRINYFD-----TQHVETVIKEVLSV-NSHATLIIKST 118 (196)
T ss_dssp HHHHCSEEEECCCCCEETTTTEEC-----CHHHHHHHHHHHHH-CSSCEEEECSC
T ss_pred hhhccccccccCCccccccCCCcc-----eeEEeehhhhhhhc-ccceeEEeeee
Confidence 899999998876555321111111 23344445555555 56655555443
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.21 E-value=0.0012 Score=59.12 Aligned_cols=189 Identities=14% Similarity=0.099 Sum_probs=95.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCC--CCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC------cc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVL--GPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------PY 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~--~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~------~~ 167 (337)
|||.|+||+|+||++++..|+..+.- +.+ .+..+|.-....... .+.... ...++..- .+ ..
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~---~i~~~d~~~~~~~~~----~~~~~~--~~~~~~~~~~d~~~~~~~~ 71 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPAD---EVIVLDSLTYAGNRA----NLAPVD--ADPRLRFVHGDIRDAGLLA 71 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCS---EEEEEECCCTTCCGG----GGGGGT--TCTTEEEEECCTTCHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCc---eEEEEeCCCccccHh----Hhhhhh--cCCCeEEEEeccccchhhh
Confidence 69999999999999999999987752 211 122222111111111 011111 00122221 11 23
Q ss_pred cccCCCcEEEEecccCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHH---HHHHHCCCCCCC
Q 019713 168 ELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL---ICLKNAPSIPAK 242 (337)
Q Consensus 168 eal~dADvVIitag~prk~g--~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~---i~~k~s~~~p~k 242 (337)
....+.|+|+..++.+.... ....+.+..|+.....+.+.+.+. .. .++|..|...-.-.. -.-+..+.-| .
T Consensus 72 ~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~-~~-~~~I~~Ss~~~yg~~~~~~~~E~~~~~p-~ 148 (322)
T d1r6da_ 72 RELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA-GV-GRVVHVSTNQVYGSIDSGSWTESSPLEP-N 148 (322)
T ss_dssp HHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHT-TC-CEEEEEEEGGGGCCCSSSCBCTTSCCCC-C
T ss_pred ccccccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHc-CC-ceEEEeecceeecCCCCCCCCCCCCCCC-C
Confidence 45789999998876543211 123345678888889999988886 33 356666521100000 0000010000 1
Q ss_pred eEEecCchhHHHHHHHHHHHhCCCcccccceEEEecc--CCCcccccccceEcCeeh
Q 019713 243 NFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNH--STTQVPDFLNARINGLPV 297 (337)
Q Consensus 243 vIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnH--G~t~vp~~S~a~V~G~pl 297 (337)
..=+.+-+-...+-...+++.|++...++-..|+|.+ ++..+|.|-.....|.|+
T Consensus 149 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~~~~i 205 (322)
T d1r6da_ 149 SPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTL 205 (322)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHHHHHHHcCCCc
Confidence 0000111222234455566778888777755688843 345566665444455544
|
| >d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.21 E-value=7.8e-05 Score=67.15 Aligned_cols=73 Identities=19% Similarity=0.259 Sum_probs=55.5
Q ss_pred HHHHHHHHhCCCcccccceEEEe-ccCCCcccccccceEcCeehhhhhhh----ccc---chH-----HH-HHHHHhccC
Q 019713 255 AKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD----HKW---LEE-----GF-TETIQKVRL 320 (337)
Q Consensus 255 ~~~~lA~~lgv~~~~V~~v~V~G-nHG~t~vp~~S~a~V~G~pl~e~i~~----~~~---~~~-----e~-~~~v~~~g~ 320 (337)
+.+.+|+.||+++++|+ +.+.| || +.|+..++++|+++.+.+.+ ... ..+ .+ .+..+..|.
T Consensus 6 ~~~~la~~Lg~~~~~i~-~~~~GlNH----~~W~~~~~~~G~D~~p~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (270)
T d1s6ya2 6 MRMGVAKLLGVDADRVH-IDFAGLNH----MVFGLHVYLDGVEVTEKVIDLVAHPDRSGVTMKNIVDLGWEPDFLKGLKV 80 (270)
T ss_dssp HHHHHHHHHTSCGGGEE-EEEEEETT----EEEEEEEEETTEECHHHHHHHHSCC------------CCCCHHHHHHHCS
T ss_pred HHHHHHHHcCCCHHHcE-EEEEeeCC----HhHeeeeEECCccccHHHHHHHhcccccccccccccccCcCHHHHHhccc
Confidence 56789999999999999 47899 99 99999999999999875542 110 000 01 345677899
Q ss_pred cccceeheeeee
Q 019713 321 VDNFTLILFVMN 332 (337)
Q Consensus 321 ~~~~~l~~~~~~ 332 (337)
.|+.|++|||+.
T Consensus 81 ~p~~y~~yy~~~ 92 (270)
T d1s6ya2 81 LPCPYHRYYFQT 92 (270)
T ss_dssp BCCGGGHHHHSH
T ss_pred Eecccccccccc
Confidence 999999999863
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=0.00099 Score=59.79 Aligned_cols=109 Identities=13% Similarity=0.071 Sum_probs=65.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--cCcccccCCCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t~~~eal~dAD 174 (337)
+||.|+||+|+||++++..|...+. .|...........+.+ .+.. -...+.+. ......+.+.|
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~-----~V~~~d~~~~~~~~~~-------~~~~--~~~~~d~~~~~~~~~~~~~~d 67 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGH-----EVTVVDNFFTGRKRNV-------EHWI--GHENFELINHDVVEPLYIEVD 67 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCSSCCGGGT-------GGGT--TCTTEEEEECCTTSCCCCCCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcC-----EEEEEeCCCcCCHHHH-------HHhc--CCCceEEEehHHHHHHHcCCC
Confidence 5899999999999999999988764 2432110011111111 1111 01123332 22345677999
Q ss_pred EEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 175 vVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+||-+|+....+ ..+..+.+..|+.....+.+.+++. . +++|.+|
T Consensus 68 ~VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~-~--~k~I~~S 114 (312)
T d2b69a1 68 QIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV-G--ARLLLAS 114 (312)
T ss_dssp EEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-T--CEEEEEE
T ss_pred EEEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHc-C--CcEEEEE
Confidence 999887643211 1233456788988889999888875 2 4666654
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.12 E-value=0.00051 Score=55.95 Aligned_cols=72 Identities=25% Similarity=0.264 Sum_probs=43.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+++||+|+||+|.+|..+...|..... . .+.|..+....+ .|... . .......+...+.+.+.++|
T Consensus 1 q~mnVaIvGATGyvG~eli~lL~~~~h-P---~~~l~~~~s~~~----~Gk~i--~----~~~~~~~~~~~~~~~~~~~d 66 (144)
T d2hjsa1 1 QPLNVAVVGATGSVGEALVGLLDERDF-P---LHRLHLLASAES----AGQRM--G----FAESSLRVGDVDSFDFSSVG 66 (144)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTC-C---CSCEEEEECTTT----TTCEE--E----ETTEEEECEEGGGCCGGGCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCC-C---ceEEEEEeeccc----CCcce--e----eccccchhccchhhhhccce
Confidence 468999999999999999998875432 1 123444433322 22211 1 11123334344567889999
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+++++.
T Consensus 67 ~vf~a~ 72 (144)
T d2hjsa1 67 LAFFAA 72 (144)
T ss_dssp EEEECS
T ss_pred EEEecC
Confidence 999875
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.00 E-value=0.00039 Score=58.76 Aligned_cols=107 Identities=14% Similarity=0.111 Sum_probs=58.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch--hhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~--~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
++||.|+||+|++|++++..|...+... .+..+..... .++++....|+.+ .......+.
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~-----~v~~~~r~~~~~~~~~~~~~~d~~~-------------~~~~~~~~~ 63 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLA-----KVIAPARKALAEHPRLDNPVGPLAE-------------LLPQLDGSI 63 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCC-----EEECCBSSCCCCCTTEECCBSCHHH-------------HGGGCCSCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeE-----EEEEEeCCchhhcccccccccchhh-------------hhhccccch
Confidence 4799999999999999999998877532 2222111100 0011111111111 012234567
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
|.|+.++|...........+...|......+++..++. ... .++.+|
T Consensus 64 d~vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~v~-~~i~~S 110 (212)
T d2a35a1 64 DTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEM-GAR-HYLVVS 110 (212)
T ss_dssp SEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHT-TCC-EEEEEC
T ss_pred heeeeeeeeeccccccccccccchhhhhhhcccccccc-ccc-cccccc
Confidence 99998876543222233445666666667777766664 333 455555
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.99 E-value=0.00048 Score=62.75 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=62.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-----cCcc
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-----INPY 167 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-----t~~~ 167 (337)
|++.|||.|+||+|+||++++..|...+. .|.. +|....... . .++. ..++... .+..
T Consensus 12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~-----~V~~--~d~~~~~~~-~---~~~~------~~~~~~~D~~~~~~~~ 74 (363)
T d2c5aa1 12 PSENLKISITGAGGFIASHIARRLKHEGH-----YVIA--SDWKKNEHM-T---EDMF------CDEFHLVDLRVMENCL 74 (363)
T ss_dssp TTSCCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EESSCCSSS-C---GGGT------CSEEEECCTTSHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCcC-----EEEE--EeCCCccch-h---hhcc------cCcEEEeechhHHHHH
Confidence 45678999999999999999999998775 2332 222111110 0 0000 0112211 1223
Q ss_pred cccCCCcEEEEecccCCCC---CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 168 ELFEDAEWALLIGAKPRGP---GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 168 eal~dADvVIitag~prk~---g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+.+++.|.||.+++..... ...-......|......+.....+. +-. ++|.+|
T Consensus 75 ~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~-~vk-~~i~~S 130 (363)
T d2c5aa1 75 KVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARIN-GIK-RFFYAS 130 (363)
T ss_dssp HHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCS-EEEEEE
T ss_pred HHhhcCCeEeecccccccccccccccccccccccchhhHHHHhHHhh-Ccc-cccccc
Confidence 5578999999877543211 1122334566777777778877775 222 455555
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.98 E-value=0.0032 Score=52.51 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=24.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVL 122 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~ 122 (337)
|+||+|+||+|.+|..+...|....-+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ 27 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHM 27 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCC
Confidence 789999999999999999999887654
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=96.97 E-value=0.0021 Score=51.64 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=24.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..++||+|||+.|.||..+|..|...|+
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~ 34 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASGY 34 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTTC
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCC
Confidence 4567999999669999999999998876
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.00098 Score=60.25 Aligned_cols=110 Identities=14% Similarity=0.090 Sum_probs=63.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc--cchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--ERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY---- 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~--d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~---- 167 (337)
|||.|+||+|+||++++..|+..+. .|.+ +|. ......+.. +++.... ++.. ..| +.
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~-----~V~~--~d~~~~~~~~~~~~----~~~~~~~---~~~~~~~Dl~d~~~l~ 66 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGH-----DVII--LDNLCNSKRSVLPV----IERLGGK---HPTFVEGDIRNEALMT 66 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EECCSSCCTTHHHH----HHHHHTS---CCEEEECCTTCHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-----EEEE--EECCCCcchhhHHH----HHhhcCC---CCEEEEeecCCHHHHH
Confidence 7999999999999999999998774 2433 221 001111111 1111111 1111 111 22
Q ss_pred cccC--CCcEEEEecccCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 168 ELFE--DAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 168 eal~--dADvVIitag~prk~g--~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+.++ +.|+||-+|+.+..+. ....+.+..|+.-...+.+.+++. +.. .+|..|
T Consensus 67 ~~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~-~v~-~~i~~S 123 (338)
T d1udca_ 67 EILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVK-NFIFSS 123 (338)
T ss_dssp HHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCC-EEEEEE
T ss_pred HHHhccCCCEEEECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHh-CCC-EEEecC
Confidence 3445 6899998886432111 123466888999888999988886 444 344444
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=96.88 E-value=0.0091 Score=53.72 Aligned_cols=115 Identities=17% Similarity=0.068 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec------Ccccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI------NPYEL 169 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t------~~~ea 169 (337)
-.||.|+||+|+||++++..|+..|. .|.. ++ ++.++.....- +.+..........+.. ...++
T Consensus 11 gk~VlVTG~sGfIGs~l~~~Ll~~G~-----~V~~-~v---R~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 80 (342)
T d1y1pa1 11 GSLVLVTGANGFVASHVVEQLLEHGY-----KVRG-TA---RSASKLANLQK-RWDAKYPGRFETAVVEDMLKQGAYDEV 80 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE-EE---SSHHHHHHHHH-HHHHHSTTTEEEEECSCTTSTTTTTTT
T ss_pred cCEEEEECCCCHHHHHHHHHHHHCcC-----EEEE-Ee---CCchhHHHHHH-hhhccccccccEEEeccccchhhhhhh
Confidence 46999999999999999999998875 2422 22 23233222111 1111111111111111 12367
Q ss_pred cCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 170 l~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++++|.|+..++... ...+.......|+.-...+.+.+.+.... -++|.+|
T Consensus 81 ~~~~~~v~~~a~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~~v-~~~i~~S 131 (342)
T d1y1pa1 81 IKGAAGVAHIASVVS-FSNKYDEVVTPAIGGTLNALRAAAATPSV-KRFVLTS 131 (342)
T ss_dssp TTTCSEEEECCCCCS-CCSCHHHHHHHHHHHHHHHHHHHHTCTTC-CEEEEEC
T ss_pred cccchhhhhhccccc-ccccccccccchhhhHHHHHHhhhccccc-ccccccc
Confidence 899999998776432 22333345556777777777777775222 2444444
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.86 E-value=0.00063 Score=55.10 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=37.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~ 153 (337)
|||+|||++|.+|.++|..|+..|. .|.+. ++++++++..+.++....
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~-----~V~l~----~R~~e~~~~l~~~i~~~~ 48 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGH-----EIVVG----SRREEKAEAKAAEYRRIA 48 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-----EEEEE----ESSHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHhcC
Confidence 7999996679999999999999886 36552 567778877777676544
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=96.81 E-value=0.0003 Score=63.96 Aligned_cols=105 Identities=16% Similarity=0.145 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecC-------cc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-------PY 167 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~-------~~ 167 (337)
+||||.|+||+|+||++++..|...+.- +.+..+|. .+..... ..+.... ..++..... -.
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~-----v~v~~~d~-~~~~~~~---~~~~~~~---~~~i~~~~~Di~d~~~~~ 68 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPD-----VHVTVLDK-LTYAGNK---ANLEAIL---GDRVELVVGDIADAELVD 68 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTT-----CEEEEEEC-CCTTCCG---GGTGGGC---SSSEEEEECCTTCHHHHH
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCC-----eEEEEEeC-CCccccH---HHHHHhh---cCCeEEEEccCCCHHHHH
Confidence 4799999999999999999999887741 22222221 0000000 0011111 112332211 13
Q ss_pred cccCCCcEEEEecccCCCCC--CchhhhHHhhHHHHHHHHHHHHhh
Q 019713 168 ELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAV 211 (337)
Q Consensus 168 eal~dADvVIitag~prk~g--~~R~dll~~N~~I~~~i~~~I~~~ 211 (337)
+.+++.|.|+..++.....+ .+..+.+..|+.....+.....+.
T Consensus 69 ~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~ 114 (346)
T d1oc2a_ 69 KLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY 114 (346)
T ss_dssp HHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhccc
Confidence 55678889888775433221 122356778888888888888776
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=96.78 E-value=0.001 Score=55.24 Aligned_cols=98 Identities=12% Similarity=0.153 Sum_probs=58.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE--EecCcccccCCCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK--IGINPYELFEDAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~--i~t~~~eal~dAD 174 (337)
.+|+||| .|.||+.+|..|+..+. .+.. + |+++++++....+ .. ......- ...+..+.+.++|
T Consensus 3 ~nIg~IG-lG~MG~~mA~~L~~~G~-----~V~v--~--dr~~~~~~~l~~~---~~-~~~~~~~a~~~~~~~~~~~~~~ 68 (176)
T d2pgda2 3 ADIALIG-LAVMGQNLILNMNDHGF-----VVCA--F--NRTVSKVDDFLAN---EA-KGTKVLGAHSLEEMVSKLKKPR 68 (176)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE--E--CSSTHHHHHHHHT---TT-TTSSCEECSSHHHHHHHBCSSC
T ss_pred CcEEEEe-EhHHHHHHHHHHHHCCC-----eEEE--E--cCCHHHHHHHHHh---cc-ccccccchhhhhhhhhhhcccc
Confidence 4799999 69999999999999886 2544 3 5565665543221 11 1000011 1123457788999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.++++... .+.+.++...|.....++.++|..|+
T Consensus 69 ~ii~~~~~---------------~~~v~~v~~~l~~~~~~g~iiid~sT 102 (176)
T d2pgda2 69 RIILLVKA---------------GQAVDNFIEKLVPLLDIGDIIIDGGN 102 (176)
T ss_dssp EEEECSCT---------------THHHHHHHHHHHHHCCTTCEEEECSC
T ss_pred eEEEecCc---------------hHHHHHHHHHHHhccccCcEEEecCc
Confidence 99887421 23344455556665567777776664
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.77 E-value=0.00094 Score=54.11 Aligned_cols=64 Identities=16% Similarity=0.084 Sum_probs=40.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+||| .|.||+.++..|...+. .+. .++.+.. ...... .+.. .+. ....+.++++|+|
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~-----~v~--~~~~~~~-~~~~~~----~~~~-----~~~--~~~~e~~~~~diI 60 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGV-----EVV--TSLEGRS-PSTIER----ARTV-----GVT--ETSEEDVYSCPVV 60 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTC-----EEE--ECCTTCC-HHHHHH----HHHH-----TCE--ECCHHHHHTSSEE
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCC-----eEE--EEcCchh-HHHHHh----hhcc-----ccc--ccHHHHHhhcCeE
Confidence 6999999 59999999999999875 233 3332221 111111 1111 111 2345789999999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
|++.
T Consensus 61 i~~v 64 (152)
T d1i36a2 61 ISAV 64 (152)
T ss_dssp EECS
T ss_pred EEEe
Confidence 9875
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.65 E-value=0.0025 Score=52.52 Aligned_cols=107 Identities=16% Similarity=0.167 Sum_probs=64.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
-+..||.|||| |.+|..++..|...+.- .+.+ ..++.++++..+.++.. ++....+..+.+.++
T Consensus 22 l~~~~ilviGa-G~~g~~v~~~L~~~g~~----~i~v----~nRt~~ka~~l~~~~~~-------~~~~~~~~~~~l~~~ 85 (159)
T d1gpja2 22 LHDKTVLVVGA-GEMGKTVAKSLVDRGVR----AVLV----ANRTYERAVELARDLGG-------EAVRFDELVDHLARS 85 (159)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCS----EEEE----ECSSHHHHHHHHHHHTC-------EECCGGGHHHHHHTC
T ss_pred cccCeEEEECC-CHHHHHHHHHHHhcCCc----EEEE----EcCcHHHHHHHHHhhhc-------ccccchhHHHHhccC
Confidence 35579999995 99999999999987752 2444 35666776655543321 111123456788999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
|+||.+-+.|. |-.+ .+.++...+. ++. ....+||=++.|-|+
T Consensus 86 Divi~atss~~-~ii~--------~~~i~~~~~~-r~~-~~~~~iiDlavPr~v 128 (159)
T d1gpja2 86 DVVVSATAAPH-PVIH--------VDDVREALRK-RDR-RSPILIIDIANPRDV 128 (159)
T ss_dssp SEEEECCSSSS-CCBC--------HHHHHHHHHH-CSS-CCCEEEEECCSSCSB
T ss_pred CEEEEecCCCC-cccc--------HhhhHHHHHh-ccc-CCCeEEEeecCCCCc
Confidence 99998765542 1111 1223332221 111 223477888999655
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.62 E-value=0.00091 Score=56.38 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=43.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
.+.+||+|+||+|.+|.-+...|..... +.|..+..+.+..+.-+... ...... ..........+.++++
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~------~ei~~l~S~~~aG~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~ 72 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQ------FRIKVMTADRKAGEQFGSVF---PHLITQ-DLPNLVAVKDADFSNV 72 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSS------EEEEEEECSTTTTSCHHHHC---GGGTTS-CCCCCBCGGGCCGGGC
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCC------ceEEEEeccccCCCcccccc---cccccc-ccccchhhhhhhhccc
Confidence 4568999999999999999999987654 44443433333222211111 111010 0111112234667899
Q ss_pred cEEEEec
Q 019713 174 EWALLIG 180 (337)
Q Consensus 174 DvVIita 180 (337)
|+|+++.
T Consensus 73 Dvvf~al 79 (183)
T d2cvoa1 73 DAVFCCL 79 (183)
T ss_dssp SEEEECC
T ss_pred ceeeecc
Confidence 9999874
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=96.58 E-value=0.0044 Score=51.02 Aligned_cols=39 Identities=21% Similarity=0.451 Sum_probs=30.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhH
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV 145 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~ 145 (337)
|||+||| .|.||+.+|..|+..+. .|.. + |+++++.+..
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G~-----~V~~--~--dr~~~~~~~l 40 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKGF-----KVAV--F--NRTYSKSEEF 40 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC-----CEEE--E--CSSHHHHHHH
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCCC-----eEEE--E--ECCHHHHHHH
Confidence 7999999 69999999999999885 2544 3 5566666554
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.57 E-value=0.0018 Score=51.11 Aligned_cols=67 Identities=21% Similarity=0.208 Sum_probs=42.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec--C----ccccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N----PYELF 170 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t--~----~~eal 170 (337)
|||.|+|+ |.+|..++..|...+. .+.+ +|.++++++....++ + ..+..+. + ....+
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~-----~v~v----id~d~~~~~~~~~~~-~------~~vi~Gd~~~~~~l~~~~i 63 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGH-----DIVL----IDIDKDICKKASAEI-D------ALVINGDCTKIKTLEDAGI 63 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHC-S------SEEEESCTTSHHHHHHTTT
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-----Ccce----ecCChhhhhhhhhhh-h------hhhccCcccchhhhhhcCh
Confidence 79999995 9999999999988775 2443 355666665432211 1 1222211 1 12447
Q ss_pred CCCcEEEEec
Q 019713 171 EDAEWALLIG 180 (337)
Q Consensus 171 ~dADvVIita 180 (337)
++||.++.+-
T Consensus 64 ~~a~~vv~~t 73 (132)
T d1lssa_ 64 EDADMYIAVT 73 (132)
T ss_dssp TTCSEEEECC
T ss_pred hhhhhhcccC
Confidence 8999988763
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.53 E-value=0.0029 Score=53.11 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--cCcccccCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFED 172 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t~~~eal~d 172 (337)
+-++|.|+||+|.||..++..|+..|. .|.+ .+++.++++..+.++............+. .+-.+.+.+
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGA-----EVVL----CGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKG 92 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhcc-----chhh----cccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcC
Confidence 347999999999999999999999885 2554 35666676655555544221111112222 123467889
Q ss_pred CcEEEEecccC
Q 019713 173 AEWALLIGAKP 183 (337)
Q Consensus 173 ADvVIitag~p 183 (337)
+|+||.++|.+
T Consensus 93 iDilin~Ag~g 103 (191)
T d1luaa1 93 AHFVFTAGAIG 103 (191)
T ss_dssp CSEEEECCCTT
T ss_pred cCeeeecCccc
Confidence 99999988753
|
| >d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=96.52 E-value=0.0006 Score=61.32 Aligned_cols=74 Identities=16% Similarity=0.293 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhCCCc-ccccceEEEe-ccCCCcccccccce-EcCeehhhhhhhc-----------------ccchHHHH
Q 019713 253 NRAKCQLALKAGVFY-DKVSNMTIWG-NHSTTQVPDFLNAR-INGLPVKEIIKDH-----------------KWLEEGFT 312 (337)
Q Consensus 253 ~R~~~~lA~~lgv~~-~~V~~v~V~G-nHG~t~vp~~S~a~-V~G~pl~e~i~~~-----------------~~~~~e~~ 312 (337)
.-++..+|+.||+++ ++|+ +-+.| || +.||.+++ .+|+++.+.+.+. .|.. +|.
T Consensus 6 ~~~~~~ia~~Lgv~~~~ev~-~~~~GLNH----~~w~~~v~~~~G~D~~p~l~e~~~~~~~~~~~~~~~~~~~~~~-~~~ 79 (276)
T d1u8xx2 6 VGIEDRMAQILGLSSRKEMK-VRYYGLNH----FGWWTSIQDQEGNDLMPKLKEHVSQYGYIPKTEAEAVEASWND-TFA 79 (276)
T ss_dssp HHHHHHHHHHHTCSCGGGEE-EEEEEETT----EEEEEEEEETTCCBCHHHHHHHHHHHSSCCCC-------CTTS-HHH
T ss_pred HHHHHHHHHHcCCCchhceE-EEEEeecc----HHHHhheeccCCEECHHHHHHHHHhcCCCCcccccccccccHH-HHH
Confidence 346889999999987 5799 47899 99 99999998 6999988755321 1211 222
Q ss_pred HH----HHhccCcccceeheeeee
Q 019713 313 ET----IQKVRLVDNFTLILFVMN 332 (337)
Q Consensus 313 ~~----v~~~g~~~~~~l~~~~~~ 332 (337)
+. ....+..|+.||.|||+.
T Consensus 80 ~~~~~~~~~~~~~p~~Yl~Yy~~~ 103 (276)
T d1u8xx2 80 KARDVQAADPDTLPNTYLQYYLFP 103 (276)
T ss_dssp HHHHHHHTSTTSEECGGGHHHHSH
T ss_pred HHhCCcccCCcccchhHHHhccch
Confidence 11 112366889999999874
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.48 E-value=0.00072 Score=56.30 Aligned_cols=160 Identities=19% Similarity=0.155 Sum_probs=79.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-----cCcccc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-----INPYEL 169 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-----t~~~ea 169 (337)
.|.+|.|+||+|++|++++..|+..+.- +.+.. ..++++++.. +.... ++... .+..++
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~-----v~v~~--~~R~~~~~~~----~~~~~-----~~~~~d~~~~~~~~~~ 65 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDK-----FVAKG--LVRSAQGKEK----IGGEA-----DVFIGDITDADSINPA 65 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTT-----CEEEE--EESCHHHHHH----TTCCT-----TEEECCTTSHHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCc-----EEEEE--EcCCHHHHHh----ccCCc-----EEEEeeeccccccccc
Confidence 4679999999999999999999987741 33322 2334333321 11110 11111 112467
Q ss_pred cCCCcEEEEecccCCC--C-------C------CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHH
Q 019713 170 FEDAEWALLIGAKPRG--P-------G------MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLK 234 (337)
Q Consensus 170 l~dADvVIitag~prk--~-------g------~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k 234 (337)
++++|.||.+++.... + . .........|..-.+.+....... ..... ...+... .-
T Consensus 66 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~s~~~-~~------ 136 (252)
T d2q46a1 66 FQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-GVKHI-VVVGSMG-GT------ 136 (252)
T ss_dssp HTTCSEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-TCSEE-EEEEETT-TT------
T ss_pred cccceeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccc-ccccc-ccccccc-cC------
Confidence 8999999987653210 0 0 011222344444445555555444 23322 2222110 00
Q ss_pred HCCCCCCCeEEecCchhHHHHHHHHHHHhCCCcccccceEEEeccC
Q 019713 235 NAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHS 280 (337)
Q Consensus 235 ~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG 280 (337)
.+..|..............+...+....|++..-++-..++|+++
T Consensus 137 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilRp~~v~g~~~ 181 (252)
T d2q46a1 137 -NPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEG 181 (252)
T ss_dssp -CTTCGGGGGGGCCHHHHHHHHHHHHHHSSSCEEEEEECEEECSCT
T ss_pred -CCCcccccccccchhhhhhhhhhhhhcccccceeecceEEECCCc
Confidence 011111112222333445566666777777766665446788754
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=96.44 E-value=0.00052 Score=61.88 Aligned_cols=98 Identities=11% Similarity=0.049 Sum_probs=58.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe----cCc----cc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG----INP----YE 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~----t~~----~e 168 (337)
|||.|+||+|+||++++..|+..+.. .|. .+|. ...... ++.+. .+++.. ++. ..
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~----~V~--~ld~--~~~~~~----~~~~~-----~~~~~i~~Di~~~~~~~~~ 63 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHY----EVY--GLDI--GSDAIS----RFLNH-----PHFHFVEGDISIHSEWIEY 63 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTC----EEE--EEES--CCGGGG----GGTTC-----TTEEEEECCTTTCSHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCC----EEE--EEeC--CCcchh----hhccC-----CCeEEEECccCChHHHHHH
Confidence 69999999999999999999877642 132 2222 211111 01110 112211 111 13
Q ss_pred ccCCCcEEEEecccCCCCCC--chhhhHHhhHHHHHHHHHHHHhh
Q 019713 169 LFEDAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAV 211 (337)
Q Consensus 169 al~dADvVIitag~prk~g~--~R~dll~~N~~I~~~i~~~I~~~ 211 (337)
.++++|+||.+|+....++. .-......|+.....+.+.+.+.
T Consensus 64 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~ 108 (342)
T d2blla1 64 HVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY 108 (342)
T ss_dssp HHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT
T ss_pred HHhCCCccccccccccccccccCCccccccccccccccccccccc
Confidence 67789999998875332211 12245778888888898888875
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.40 E-value=0.035 Score=49.38 Aligned_cols=118 Identities=14% Similarity=0.079 Sum_probs=63.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceE-EEeccccchhhHHHhHHHhHhhhccCCcccEEEec-C------
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIA-LKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N------ 165 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~-L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~------ 165 (337)
.+++||-|+||+|+||++++..|...|. .|. +.... ..+...++........... .++.+.. |
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~-----~V~~~d~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~d~~~ 84 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLDQ-----KVVGLDNFA-TGHQRNLDEVRSLVSEKQW---SNFKFIQGDIRNLDD 84 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCS-SCCHHHHHHHHHHSCHHHH---TTEEEEECCTTSHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-----EEEEEECCC-CcchhhHHHHHHhhhhccc---CCeeEEeeccccccc
Confidence 4557899999999999999999998775 232 21111 1111222111110111110 1222211 1
Q ss_pred cccccCCCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 166 PYELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 166 ~~eal~dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
......+.|.|+..+....-+ ..+.......|+.....+.+.+.+. +.. ++|..|
T Consensus 85 ~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~-~~~-~~i~~S 141 (341)
T d1sb8a_ 85 CNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-KVQ-SFTYAA 141 (341)
T ss_dssp HHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCS-EEEEEE
T ss_pred cccccccccccccccccccccccccCccchhheeehhHHHHHHHHHhc-CCc-eEEEcc
Confidence 123566778888766433211 1233456778888888898888886 444 444444
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=96.35 E-value=0.0074 Score=54.83 Aligned_cols=114 Identities=7% Similarity=0.013 Sum_probs=59.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc---hhhHHHhHHHhHhhhccCCcccEEEecC---cc----
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER---SLQALEGVAMELEDSLFPLLREVKIGIN---PY---- 167 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~---~~~~l~g~a~DL~d~~~~~~~~v~i~t~---~~---- 167 (337)
+|-|+||+|+||++++..|...+. .|.. +|... +.++++....+.. ....++.+... +.
T Consensus 3 ~vLITGatGfiGs~lv~~Ll~~g~-----~V~~--~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~d~~~~~ 71 (357)
T d1db3a_ 3 VALITGVTGQDGSYLAEFLLEKGY-----EVHG--IKRRASSFNTERVDHIYQDPH----TCNPKFHLHYGDLSDTSNLT 71 (357)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-----EEEE--ECC-------------------------CCEEECCCCSSCHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCcC-----EEEE--EECCCcccchhhHHHHHhhhh----hcCCCeEEEEeecCCHHHHH
Confidence 344999999999999999998774 2322 22111 2223222111111 11223444322 22
Q ss_pred cccCC--CcEEEEecccCCC--CCCchhhhHHhhHHHHHHHHHHHHhhcCC-CeEEEEeC
Q 019713 168 ELFED--AEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASR-NVKVIVVG 222 (337)
Q Consensus 168 eal~d--ADvVIitag~prk--~g~~R~dll~~N~~I~~~i~~~I~~~a~p-~aivIvvt 222 (337)
+.+++ .|+|+.+++.... ...+.......|+.-...+.+.+++.+.. ...+|.+|
T Consensus 72 ~~~~~~~~d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~S 131 (357)
T d1db3a_ 72 RILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAS 131 (357)
T ss_dssp HHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred HHHhccCCCEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 33443 4999998876432 22334456777888888888888776433 34566554
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=96.33 E-value=0.0093 Score=54.38 Aligned_cols=112 Identities=17% Similarity=0.131 Sum_probs=59.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccc----c---chhhHHHhHHHhHhhhccC----CcccEEEe
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGS----E---RSLQALEGVAMELEDSLFP----LLREVKIG 163 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~-~~l~~e~~~v~L~L~d~----d---~~~~~l~g~a~DL~d~~~~----~~~~v~i~ 163 (337)
-|||-|+||+|+||++++..|+. ++. .|.. +|. . ...+..+.....+...... ....+.+.
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~-----~V~~--~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNH-----SVVI--VDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALE 74 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCC-----EEEE--EECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCC-----EEEE--EecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEE
Confidence 36999999999999999998875 443 2332 221 0 0111122222222221110 11223322
Q ss_pred cCc----------ccccCCCcEEEEecccCCCCCC--chhhhHHhhHHHHHHHHHHHHhhcCCC
Q 019713 164 INP----------YELFEDAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAVASRN 215 (337)
Q Consensus 164 t~~----------~eal~dADvVIitag~prk~g~--~R~dll~~N~~I~~~i~~~I~~~a~p~ 215 (337)
..| .+..+++|+|+-+|+....+.. ........|......+.....+. ...
T Consensus 75 ~~Di~d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~-~~~ 137 (383)
T d1gy8a_ 75 VGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH-KCD 137 (383)
T ss_dssp ESCTTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred ECcccCHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhcc-CCc
Confidence 222 1234578999998865321111 22234667888888888888886 444
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.30 E-value=0.0081 Score=48.52 Aligned_cols=61 Identities=16% Similarity=0.088 Sum_probs=37.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEEE
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVI 177 (337)
||++|| .|.||..+|..|+..+. +. +. +++.++..... +... . . ....+.+.++|++|
T Consensus 2 kIg~IG-lG~MG~~ma~~L~~~g~------~~-~~---~~~~~~~~~~~---~~~~-~-----~--~~~~~~~~~~~~~i 59 (156)
T d2cvza2 2 KVAFIG-LGAMGYPMAGHLARRFP------TL-VW---NRTFEKALRHQ---EEFG-S-----E--AVPLERVAEARVIF 59 (156)
T ss_dssp CEEEEC-CSTTHHHHHHHHHTTSC------EE-EE---CSSTHHHHHHH---HHHC-C-----E--ECCGGGGGGCSEEE
T ss_pred eEEEEe-HHHHHHHHHHHHHhCCC------EE-EE---eCCHHHHHHHH---HHcC-C-----c--ccccccccceeEEE
Confidence 899999 69999999999987653 22 22 22323332221 1111 1 1 23457788899988
Q ss_pred Eec
Q 019713 178 LIG 180 (337)
Q Consensus 178 ita 180 (337)
+..
T Consensus 60 ~~~ 62 (156)
T d2cvza2 60 TCL 62 (156)
T ss_dssp ECC
T ss_pred ecc
Confidence 764
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=96.20 E-value=0.00087 Score=54.00 Aligned_cols=62 Identities=16% Similarity=0.088 Sum_probs=36.1
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEEEE
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALL 178 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVIi 178 (337)
|++|| +|+||++++..|..+... ..+ .+++.++++..+..... . ..+..++++.+|+|++
T Consensus 2 IgfIG-~G~mg~~l~~~L~~~~~~-----~~v----~~R~~~~~~~l~~~~~~---------~-~~~~~~~~~~~DiVil 61 (153)
T d2i76a2 2 LNFVG-TGTLTRFFLECLKDRYEI-----GYI----LSRSIDRARNLAEVYGG---------K-AATLEKHPELNGVVFV 61 (153)
T ss_dssp CEEES-CCHHHHHHHHTTC----C-----CCE----ECSSHHHHHHHHHHTCC---------C-CCSSCCCCC---CEEE
T ss_pred EEEEe-CcHHHHHHHHHHHhCCCE-----EEE----EeCChhhhcchhhcccc---------c-ccchhhhhccCcEEEE
Confidence 78999 599999999877543321 222 35677777655332211 1 1245688999999998
Q ss_pred ec
Q 019713 179 IG 180 (337)
Q Consensus 179 ta 180 (337)
+.
T Consensus 62 ~v 63 (153)
T d2i76a2 62 IV 63 (153)
T ss_dssp CS
T ss_pred ec
Confidence 85
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=96.17 E-value=0.0046 Score=54.58 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=61.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc-ccchhhHHHhHHHhHhhhccCCcccEEEec-Cc----ccccC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG-SERSLQALEGVAMELEDSLFPLLREVKIGI-NP----YELFE 171 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d-~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~~----~eal~ 171 (337)
||.|+||+|+||++++..|...+. .|.. +| ... ....+.. ..+.... . .++...+ .+ .++++
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~-----~V~~--id~~~~-~~~~~~~-~~~~~~~-~--~~~i~~Di~~~~~l~~~~~ 69 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGI-----DLIV--FDNLSR-KGATDNL-HWLSSLG-N--FEFVHGDIRNKNDVTRLIT 69 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EECCCS-TTHHHHH-HHHHTTC-C--CEEEECCTTCHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcC-----EEEE--EECCCc-ccchhHH-HHhhccC-C--cEEEEcccCCHHHHHHHHH
Confidence 899999999999999999998775 2432 22 111 1111111 1111111 1 1111111 11 23344
Q ss_pred C--CcEEEEecccCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 172 D--AEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 172 d--ADvVIitag~prk~g--~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+ .|+||.+|+....+. .+-.+....|+.-.+.+.+...+. +..-.|+..|
T Consensus 70 ~~~~d~Vih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~~~i~~sS 123 (338)
T d1orra_ 70 KYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQY-NSNCNIIYSS 123 (338)
T ss_dssp HHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEE
T ss_pred hcCCceEEeecccccccccccChHHHHHHHHHHHHHHHHhhhcc-cccccccccc
Confidence 4 499998876432211 122456778888888888888886 4443455554
|
| >d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=96.06 E-value=0.0023 Score=58.25 Aligned_cols=63 Identities=16% Similarity=0.087 Sum_probs=47.2
Q ss_pred HHHHHHhCCCcccccceEEEe-ccCCCcccccccceEcCeehhhhhhh----c--------ccc---hHHHHHHHHhccC
Q 019713 257 CQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD----H--------KWL---EEGFTETIQKVRL 320 (337)
Q Consensus 257 ~~lA~~lgv~~~~V~~v~V~G-nHG~t~vp~~S~a~V~G~pl~e~i~~----~--------~~~---~~e~~~~v~~~g~ 320 (337)
..||+.||+++++|+- -+.| || +.|+.+++++|+++.+.+.+ . .|. ..-..+.++.-|.
T Consensus 9 ~~ia~~Lgv~~~di~~-~~~GLNH----~~W~~~v~~~G~D~~p~l~e~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~g~ 83 (308)
T d1obba2 9 MEIVEKLGLEEEKVDW-QVAGVNH----GIWLNRFRYNGGNAYPLLDKWIEEKSKDWKPENPFNDQLSPAAIDMYRFYGV 83 (308)
T ss_dssp HHHHHHTTCCGGGEEE-EEEEETT----EEEEEEEEETTEECHHHHHHHHHHTGGGCCCSSTTCCTTSHHHHHHHHHHSS
T ss_pred HHHHHHcCCCHHHceE-EEEeecc----hhhheeeeECCEeccHHHHHHHHhhcccccccCccchhhhhhHHHHHHHcCc
Confidence 4599999999999994 6799 99 99999999999998765432 0 011 1123567888898
Q ss_pred cccc
Q 019713 321 VDNF 324 (337)
Q Consensus 321 ~~~~ 324 (337)
.|+.
T Consensus 84 ~p~~ 87 (308)
T d1obba2 84 MPIG 87 (308)
T ss_dssp CEEG
T ss_pred cccC
Confidence 8864
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.03 E-value=0.0011 Score=53.52 Aligned_cols=67 Identities=12% Similarity=0.224 Sum_probs=44.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec------Cccccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI------NPYELF 170 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t------~~~eal 170 (337)
+||.|||| |.||.++|..|+..+. .|.+ +|++.++++..+-.+... ..... ...+.+
T Consensus 3 K~IliiGa-G~~G~~~a~~L~~~g~-----~V~v----~dr~~~~a~~l~~~~~~~-------~~~~~~~~~~~~~~~~i 65 (182)
T d1e5qa1 3 KSVLMLGS-GFVTRPTLDVLTDSGI-----KVTV----ACRTLESAKKLSAGVQHS-------TPISLDVNDDAALDAEV 65 (182)
T ss_dssp CEEEEECC-STTHHHHHHHHHTTTC-----EEEE----EESCHHHHHHHHTTCTTE-------EEEECCTTCHHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-----EEEE----EECChHHHHHHHhccccc-------ccccccccchhhhHhhh
Confidence 58999995 9999999999998875 2554 467777776554332211 11111 123557
Q ss_pred CCCcEEEEec
Q 019713 171 EDAEWALLIG 180 (337)
Q Consensus 171 ~dADvVIita 180 (337)
...|+++.+.
T Consensus 66 ~~~~~~i~~~ 75 (182)
T d1e5qa1 66 AKHDLVISLI 75 (182)
T ss_dssp TTSSEEEECS
T ss_pred hccceeEeec
Confidence 7888887654
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.00 E-value=0.049 Score=47.25 Aligned_cols=113 Identities=13% Similarity=0.135 Sum_probs=69.2
Q ss_pred CEE-EEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC---------
Q 019713 97 VNI-AVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--------- 165 (337)
Q Consensus 97 ~KI-~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~--------- 165 (337)
+|| .|+||++-+|.++|..|+..|. .|.+ .++++++++..+.++.+... ++. +..|
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~l~~~~~~i~~~g~----~~~~~~~Dv~~~~~v~~ 67 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGF-----AVAI----ADYNDATAKAVASEINQAGG----HAVAVKVDVSDRDQVFA 67 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTC----CEEEEECCTTSHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCC----cEEEEEeeCCCHHHHHH
Confidence 476 5669999999999999999886 2554 35667777777777765321 111 1111
Q ss_pred ----cccccCCCcEEEEecccCC-CCC--Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 166 ----PYELFEDAEWALLIGAKPR-GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 166 ----~~eal~dADvVIitag~pr-k~g--~~R~---dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
-.+.+..-|++|..+|... ++- ++.. ..+..|+ -+.+...+.+.+. ...+.|++++-
T Consensus 68 ~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~~g~Iv~isS 138 (255)
T d1gega_ 68 AVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKE-GHGGKIINACS 138 (255)
T ss_dssp HHHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECC
T ss_pred HHHHHHHHhCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhh-ccccccccccc
Confidence 1234668999999887542 221 1221 2344453 3455666766665 56677777763
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.97 E-value=0.015 Score=47.19 Aligned_cols=71 Identities=24% Similarity=0.338 Sum_probs=43.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
-||+|+||+|.+|..+...|...+. . .+.+..+....+ .|.. +.+. ............++.++|++
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~f-p---~~~l~~~~s~~s----~G~~--~~~~----~~~~~~~~~~~~~~~~~d~~ 67 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTL-P---IDKIRYLASARS----AGKS--LKFK----DQDITIEETTETAFEGVDIA 67 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCS-C---EEEEEEEECGGG----TTCE--EEET----TEEEEEEECCTTTTTTCSEE
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCC-C---ceEEEEeccccc----cccc--cccc----CCcccccccchhhhhhhhhh
Confidence 3899999999999999998887753 1 144444433221 2211 1111 11233333455788999999
Q ss_pred EEecc
Q 019713 177 LLIGA 181 (337)
Q Consensus 177 Iitag 181 (337)
+++.+
T Consensus 68 f~~~~ 72 (154)
T d2gz1a1 68 LFSAG 72 (154)
T ss_dssp EECSC
T ss_pred hhccC
Confidence 98763
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=95.97 E-value=0.0033 Score=52.80 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|+||+|+||+|.+|.-+...|.....
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~ 26 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPE 26 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTT
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCC
Confidence 68999999999999999999987664
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=95.96 E-value=0.001 Score=57.78 Aligned_cols=99 Identities=18% Similarity=0.089 Sum_probs=55.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC--CCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~--dAD 174 (337)
|||.|+||+|+||++++..|...+. .+.+ +. ...... .|+.+.. ...+.++ +.|
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~-----~v~~---~~--~~~~~~---~Dl~~~~-----------~~~~~i~~~~~D 56 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGN-----LIAL---DV--HSKEFC---GDFSNPK-----------GVAETVRKLRPD 56 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSE-----EEEE---CT--TCSSSC---CCTTCHH-----------HHHHHHHHHCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-----EEEE---EC--CCcccc---CcCCCHH-----------HHHHHHHHcCCC
Confidence 7999999999999999998876552 1332 11 111111 1221111 0112233 359
Q ss_pred EEEEecccCCC--CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 175 WALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 175 vVIitag~prk--~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+||-+||.... ...........|......+.+..++. +.++++++
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~~s 103 (298)
T d1n2sa_ 57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANET---GAWVVHYS 103 (298)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT---TCEEEEEE
T ss_pred EEEEecccccccccccCccccccccccccccchhhhhcc---cccccccc
Confidence 99998874321 11233345566766677777766654 34666665
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.80 E-value=0.085 Score=45.78 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=71.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ec---C-------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI---N------- 165 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t---~------- 165 (337)
+.+.|+||++.||.++|..|+..|. .|++ .++++++++..+.++.....+ .++.. .. +
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~-----~Vv~----~~r~~~~l~~~~~~l~~~~~~--~~~~~~~~Dls~~~~v~~~ 79 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGL-----KVVG----CARTVGNIEELAAECKSAGYP--GTLIPYRCDLSNEEDILSM 79 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTCS--SEEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCC--ceEEEEEccCCCHHHHHHH
Confidence 4688999999999999999999886 2554 256677777777767654311 12221 11 1
Q ss_pred ---cccccCCCcEEEEecccCC-CCC--Cch---hhhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 166 ---PYELFEDAEWALLIGAKPR-GPG--MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 166 ---~~eal~dADvVIitag~pr-k~g--~~R---~dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
-.+.+..-|++|..+|... ++= .+. ...+..| .-+.+.+.+.+.+....++.||+++-
T Consensus 80 v~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS 150 (257)
T d1xg5a_ 80 FSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININS 150 (257)
T ss_dssp HHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECC
T ss_pred HHHHHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEec
Confidence 1233667899999887542 221 121 1234444 44567777777765334677777763
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.76 E-value=0.012 Score=53.77 Aligned_cols=115 Identities=11% Similarity=0.167 Sum_probs=62.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc--cchhhH------------HHhHHHhHhhhccCCcccEEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--ERSLQA------------LEGVAMELEDSLFPLLREVKI 162 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~--d~~~~~------------l~g~a~DL~d~~~~~~~~v~i 162 (337)
|||.|+||+|+||++++..|+..|. .|.. +|. ...... ............ ..++.+
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~-----~V~~--iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~ 71 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNY-----EVCI--VDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT---GKSIEL 71 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH---CCCCEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcC-----EEEE--EecCCcccccccccccccccccchHHHHHHHHhhc---CCCcEE
Confidence 6999999999999999999999885 2433 220 000000 000000001000 012222
Q ss_pred ec-C--c----ccccC--CCcEEEEecccCCCC--CCch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 163 GI-N--P----YELFE--DAEWALLIGAKPRGP--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 163 ~t-~--~----~eal~--dADvVIitag~prk~--g~~R---~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.. | + .+.++ +.|+|+-.|+....+ ..++ .+....|+.-...+.+.+.++ +....++..+
T Consensus 72 ~~~Dl~d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~~~~i~~s 144 (393)
T d1i24a_ 72 YVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEF-GEECHLVKLG 144 (393)
T ss_dssp EESCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEC
T ss_pred EEccCCCHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHh-ccccceeecc
Confidence 11 1 1 12344 349999888653211 1122 235677888888888888887 5665666555
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=95.67 E-value=0.011 Score=48.73 Aligned_cols=75 Identities=19% Similarity=0.142 Sum_probs=42.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
..+||+|+||+|.||+.++..+...+- +.|.- .+++......+ .|+.+........+.++.+..+.++++|
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~------~~lv~-~~~~~~~~~~g--~d~~~~~~~~~~~~~~~~~~~~~~~~~D 73 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEG------VQLGA-ALEREGSSLLG--SDAGELAGAGKTGVTVQSSLDAVKDDFD 73 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTT------EECCC-EECCTTCTTCS--CCTTCSSSSSCCSCCEESCSTTTTTSCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC------CEEEE-EEecccchhcc--chhhhhhccccCCceeeccHHHHhcccc
Confidence 458999999999999999998877543 22210 01221111111 2222211111124556666677889999
Q ss_pred EEEE
Q 019713 175 WALL 178 (337)
Q Consensus 175 vVIi 178 (337)
+||=
T Consensus 74 ViID 77 (162)
T d1diha1 74 VFID 77 (162)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9874
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.0064 Score=52.58 Aligned_cols=99 Identities=21% Similarity=0.147 Sum_probs=53.7
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc-ccchhhHHHhHHHhHhhhccCCcccEEEe------cCcccccC
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG-SERSLQALEGVAMELEDSLFPLLREVKIG------INPYELFE 171 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d-~d~~~~~l~g~a~DL~d~~~~~~~~v~i~------t~~~eal~ 171 (337)
|.|+||+|+||++++..|+..|.. .|.. +| ..... +.. .+.+.. . ....-. ......+.
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~----~V~~--~d~~~~~~-~~~----~~~~~~--~-~~~~~~~~~~~~~~~~~~~~ 67 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGIT----DILV--VDNLKDGT-KFV----NLVDLN--I-ADYMDKEDFLIQIMAGEEFG 67 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCC----CEEE--EECCSSGG-GGH----HHHTSC--C-SEEEEHHHHHHHHHTTCCCS
T ss_pred EEEecCccHHHHHHHHHHHhCCCC----eEEE--EECCCCcc-hhh----cccccc--h-hhhccchHHHHHHhhhhccc
Confidence 789999999999999999988752 1322 12 11111 111 011110 0 000000 01224567
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhh
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~ 211 (337)
+.++|+..|+....+..........|......+.+...+.
T Consensus 68 ~~~~i~~~aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (307)
T d1eq2a_ 68 DVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER 107 (307)
T ss_dssp SCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH
T ss_pred chhhhhhhcccccccccccccccccccccccccccccccc
Confidence 8888888876554444444455556666666666665554
|
| >d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: Putative alpha-glucosidase TM0752 species: Thermotoga maritima [TaxId: 2336]
Probab=95.61 E-value=0.0045 Score=55.36 Aligned_cols=66 Identities=14% Similarity=0.075 Sum_probs=47.3
Q ss_pred HHhCCCcccccceEEEe-ccCCCcccccccceEcCeehhhhhhhc------------ccch---HHHHHHHHhccCcc--
Q 019713 261 LKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKDH------------KWLE---EGFTETIQKVRLVD-- 322 (337)
Q Consensus 261 ~~lgv~~~~V~~v~V~G-nHG~t~vp~~S~a~V~G~pl~e~i~~~------------~~~~---~e~~~~v~~~g~~~-- 322 (337)
+.||+++++|+- -+.| || +.|+.+++++|+++.+.+.+. .|.. ....+.++..|..|
T Consensus 1 E~Lgv~~~~v~~-~~~GLNH----~~W~~~~~~~G~D~~P~L~e~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~g~~p~~ 75 (278)
T d1vjta2 1 EKLDLDPEEVDW-QVAGVNH----GIWLNRFRYRGEDAYPLLDEWIEKKLPEWEPKNPWDTQMSPAAMDMYKFYGMLPIG 75 (278)
T ss_dssp HHTTCCGGGEEE-EEEEETT----EEEEEEEEETTEECHHHHHHHHHHTGGGCCCSSTTCCTTSHHHHHHHHHHSSCEEG
T ss_pred CCCCCCHHHceE-EEEEecc----HhHhhhheECCEeccHHHHHHHHhhcccccccCccccccchhHHHHHHHhCCcccc
Confidence 468999999994 7799 99 999999999999987654320 1111 12246788888877
Q ss_pred ----cceeheeee
Q 019713 323 ----NFTLILFVM 331 (337)
Q Consensus 323 ----~~~l~~~~~ 331 (337)
+.|+.|||+
T Consensus 76 ~~~~~~y~~Yy~~ 88 (278)
T d1vjta2 76 DTVRNGSWKYHYN 88 (278)
T ss_dssp GGTTSCCGGGTSS
T ss_pred CCCcCccchhhcc
Confidence 567666654
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.59 E-value=0.046 Score=47.49 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=67.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC----------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN---------- 165 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~---------- 165 (337)
+.+.|+||++.||.++|..|+..|. .|.+. +++.++++..+.++.+.. . .++. +..|
T Consensus 6 K~~lITGas~GIG~aia~~la~~Ga-----~V~i~----~r~~~~~~~~~~~l~~~~-g--~~~~~~~~Dv~~~~~v~~~ 73 (251)
T d1vl8a_ 6 RVALVTGGSRGLGFGIAQGLAEAGC-----SVVVA----SRNLEEASEAAQKLTEKY-G--VETMAFRCDVSNYEEVKKL 73 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHHH-C--CCEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHHHh-C--CcEEEEEccCCCHHHHHHH
Confidence 5788999999999999999999886 25553 455666665555565432 1 1111 1111
Q ss_pred ---cccccCCCcEEEEecccCC-CCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 166 ---PYELFEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 166 ---~~eal~dADvVIitag~pr-k~g--~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
-.+.+..-|++|..+|... ++- .+.. ..+..| ..+.+...+.|.+. ..+.||+++
T Consensus 74 ~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~Ii~i~ 141 (251)
T d1vl8a_ 74 LEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRES--DNPSIINIG 141 (251)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC--SSCEEEEEC
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc--ccccccccc
Confidence 1133557899999888643 221 1222 234444 44567777777764 445556654
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.57 E-value=0.073 Score=46.07 Aligned_cols=114 Identities=12% Similarity=0.069 Sum_probs=71.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ec---C-------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI---N------- 165 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t---~------- 165 (337)
+.|.|+||++-+|.++|..|+..|. .|.+ .++++++++..+.++.+.. + ++.. .. +
T Consensus 8 kv~lITGas~GIG~~ia~~la~~G~-----~V~l----~~r~~~~l~~~~~~~~~~~-~---~~~~~~~Dvs~~~~v~~~ 74 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKLKS-----KLVL----WDINKHGLEETAAKCKGLG-A---KVHTFVVDCSNREDIYSS 74 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---cEEEEEeeCCCHHHHHHH
Confidence 4567779999999999999999886 2554 3567788887777776432 1 1111 11 1
Q ss_pred ---cccccCCCcEEEEecccCCCCCC--chh----hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 166 ---PYELFEDAEWALLIGAKPRGPGM--ERA----GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 166 ---~~eal~dADvVIitag~prk~g~--~R~----dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
-.+.+..-|++|..+|....... ... +++..| .-..+.+.+.+.+. ..+.||+++-..
T Consensus 75 ~~~i~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~--~~G~Iv~isS~~ 145 (244)
T d1yb1a_ 75 AKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN--NHGHIVTVASAA 145 (244)
T ss_dssp HHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCCC
T ss_pred HHHHHHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhc--CCceEEEeecch
Confidence 11356689999998876532221 111 233333 44566777888774 456777777543
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.56 E-value=0.09 Score=46.01 Aligned_cols=114 Identities=11% Similarity=0.135 Sum_probs=68.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--c-------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------- 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~------- 166 (337)
+++.|+||++-||.++|..|+..|. .|.+. ++++++++..+.++...... ..++.. ..| +
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga-----~V~~~----~r~~~~l~~~~~~i~~~~~~-~~~~~~~~~Dv~~~~~v~~~ 74 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEGA-----QVTIT----GRNEDRLEETKQQILKAGVP-AEKINAVVADVTEASGQDDI 74 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHTTCC-GGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHHcCCC-CcceEEEEeeCCCHHHHHHH
Confidence 4788999999999999999999886 25552 55667777777777654311 112221 111 1
Q ss_pred ----ccccCCCcEEEEecccCCCCC-----Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 167 ----YELFEDAEWALLIGAKPRGPG-----MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 167 ----~eal~dADvVIitag~prk~g-----~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.+.+..-|++|..+|.....+ ++.. ..+..| ..+.+...+.+.+ ..++.|++++
T Consensus 75 ~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~--~~~g~ii~~s 144 (274)
T d1xhla_ 75 INTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIK--TKGEIVNVSS 144 (274)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--TTCEEEEECC
T ss_pred HHHHHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccc--cccccccchh
Confidence 123457899999887532211 1211 223334 3356667777776 3566766665
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.55 E-value=0.0086 Score=52.42 Aligned_cols=117 Identities=17% Similarity=0.170 Sum_probs=67.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-------Ccccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-------NPYEL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-------~~~ea 169 (337)
+++.|+||++-||.++|..|+..|. .|.+. +++.++++..+.++......+..+++-.. .-.+.
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga-----~V~~~----~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 76 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGA-----RVAIA----DINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDR 76 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTE-----EEEEE----ESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 4678889999999999999999885 25542 55667777666655322111101110000 01133
Q ss_pred cCCCcEEEEecccCC-CCC--Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 FEDAEWALLIGAKPR-GPG--MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 l~dADvVIitag~pr-k~g--~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+..-|++|..+|... ++- .+. ...+..|+ -+.+..++.+.+. ...+.||+++-
T Consensus 77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~-~~~g~Iv~isS 139 (256)
T d1k2wa_ 77 WGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAG-GRGGKIINMAS 139 (256)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECC
T ss_pred hCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHh-ccCCccccccc
Confidence 457899999888543 221 122 23355553 3455667766554 45677777763
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.022 Score=49.34 Aligned_cols=117 Identities=15% Similarity=0.080 Sum_probs=67.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe---cCcccccCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG---INPYELFED 172 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~---t~~~eal~d 172 (337)
-++|.|+||++-||.++|..|+..|. .|.+ .+++++.++..+.++.... ....++.-. ..-.+.+..
T Consensus 7 GK~~lITGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~l~~~~~~~~~~~-~~~~Dv~d~~~v~~~~~~~g~ 76 (244)
T d1pr9a_ 7 GRRVLVTGAGKGIGRGTVQALHATGA-----RVVA----VSRTQADLDSLVRECPGIE-PVCVDLGDWEATERALGSVGP 76 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHSTTCE-EEECCTTCHHHHHHHHTTCCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-----EEEE----EECCHHHHHHHHHhcCCCe-EEEEeCCCHHHHHHHHHHhCC
Confidence 35888999999999999999999886 2554 3566677766555544321 110011000 012345778
Q ss_pred CcEEEEecccCC-CCC--Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 173 AEWALLIGAKPR-GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 173 ADvVIitag~pr-k~g--~~R~---dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
-|++|..+|... ++- .+.. ..+..|+ .+.+...+.+.+. ...+.||+++-
T Consensus 77 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~-~~~g~Ii~isS 136 (244)
T d1pr9a_ 77 VDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIAR-GVPGAIVNVSS 136 (244)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECC
T ss_pred ceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHh-CCcceEeeccc
Confidence 999999887643 221 1222 2344443 3456666665443 35567777763
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=95.45 E-value=0.012 Score=45.83 Aligned_cols=66 Identities=11% Similarity=0.060 Sum_probs=41.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec--C----ccccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--N----PYELF 170 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t--~----~~eal 170 (337)
+|+.|+|+ |.+|..++..|...|. ++.+ +|.++++++.. .+.. ..+.+.. + ....+
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~-----~vvv----id~d~~~~~~~----~~~~----~~~~~gd~~~~~~l~~a~i 62 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGH-----EVLA----VDINEEKVNAY----ASYA----THAVIANATEENELLSLGI 62 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTC-----CCEE----EESCHHHHHHT----TTTC----SEEEECCTTCTTHHHHHTG
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-----eEEE----ecCcHHHHHHH----HHhC----CcceeeecccchhhhccCC
Confidence 37899995 9999999999998875 3544 35566665532 2211 1232321 1 12347
Q ss_pred CCCcEEEEec
Q 019713 171 EDAEWALLIG 180 (337)
Q Consensus 171 ~dADvVIita 180 (337)
.+||.||++.
T Consensus 63 ~~a~~vi~~~ 72 (134)
T d2hmva1 63 RNFEYVIVAI 72 (134)
T ss_dssp GGCSEEEECC
T ss_pred ccccEEEEEc
Confidence 8999888764
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.44 E-value=0.024 Score=49.28 Aligned_cols=116 Identities=15% Similarity=0.057 Sum_probs=68.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-------cCcccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYEL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-------t~~~ea 169 (337)
+.+.|+||++-||.++|..|+..|. .|.+ .++++++++..+.++.+....+..+++-. ..-.+.
T Consensus 7 K~alITGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAEGA-----KVVF----GDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTA 77 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHH
Confidence 4677789999999999999999886 2554 35566777777666654321111111000 001234
Q ss_pred cCCCcEEEEecccCC-CCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 FEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 l~dADvVIitag~pr-k~g--~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+..-|++|..+|... ++- ++.. +.+..| .-+.+...+.+.+. ..+.||+++-
T Consensus 78 ~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~Ii~isS 139 (244)
T d1nffa_ 78 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA--GRGSIINISS 139 (244)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred hCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc--CcceEEeccc
Confidence 567899999887542 221 1222 234444 33456666777774 5567777774
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.43 E-value=0.063 Score=46.49 Aligned_cols=111 Identities=16% Similarity=0.085 Sum_probs=67.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--c--------
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P-------- 166 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~-------- 166 (337)
.+.|+||++.||.++|..|+..|. .|.+ .+++++.++..+.++++.. .++.. ..| +
T Consensus 12 valITGas~GIG~a~a~~la~~Ga-----~V~~----~~r~~~~l~~~~~~l~~~g----~~~~~~~~Dvt~~~~v~~~~ 78 (251)
T d2c07a1 12 VALVTGAGRGIGREIAKMLAKSVS-----HVIC----ISRTQKSCDSVVDEIKSFG----YESSGYAGDVSKKEEISEVI 78 (251)
T ss_dssp EEEEESTTSHHHHHHHHHHTTTSS-----EEEE----EESSHHHHHHHHHHHHTTT----CCEEEEECCTTCHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC-----EEEE----EECCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHH
Confidence 455779999999999999998875 2554 3567777777777676432 11111 111 1
Q ss_pred ---ccccCCCcEEEEecccCCCCC---Cch---hhhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 ---YELFEDAEWALLIGAKPRGPG---MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 ---~eal~dADvVIitag~prk~g---~~R---~dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+..-|++|..+|...... .+. .+.+..| .-+.+...+.+.+. ..+.||+++-
T Consensus 79 ~~~~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~IVnisS 146 (251)
T d2c07a1 79 NKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN--RYGRIINISS 146 (251)
T ss_dssp HHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccC--CCeEEEEECC
Confidence 234568999998887543221 121 1234444 34556677777774 4567777774
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=95.43 E-value=0.03 Score=48.04 Aligned_cols=112 Identities=12% Similarity=0.076 Sum_probs=64.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
-+++.|+||++-||.+++..|+..|. .|.+. +++++.++....+...+. +...+ ....+.+..-|+
T Consensus 4 gK~~lVTGas~GIG~aia~~l~~~Ga-----~V~~~----~r~~~~l~~~~~~~~~~D--v~~~~---~~~~~~~g~iD~ 69 (234)
T d1o5ia_ 4 DKGVLVLAASRGIGRAVADVLSQEGA-----EVTIC----ARNEELLKRSGHRYVVCD--LRKDL---DLLFEKVKEVDI 69 (234)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHTCSEEEECC--TTTCH---HHHHHHSCCCSE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHhcCCcEEEcc--hHHHH---HHHHHHhCCCcE
Confidence 35899999999999999999999886 25543 455555443211110000 00000 112466788999
Q ss_pred EEEecccCCCCC---Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 176 ALLIGAKPRGPG---MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 176 VIitag~prk~g---~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+|..+|.+.... .+.. ..+..| ..+.+...+.+++. ..+.+|+++.
T Consensus 70 lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~--~~G~ii~i~S 125 (234)
T d1o5ia_ 70 LVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEK--GWGRIVAITS 125 (234)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred EEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccc--cccccccccc
Confidence 999988764221 1222 223444 33566777777774 4556666653
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=95.41 E-value=0.14 Score=44.27 Aligned_cols=112 Identities=17% Similarity=0.178 Sum_probs=68.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC----------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN---------- 165 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~---------- 165 (337)
+.+.|+||++-||.++|..|+..|. .|.+ .+++++.++..+.++.+.. .++.. ..|
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~l~~~~~~~~~~g----~~~~~~~~Dv~~~~~v~~~ 72 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEEGT-----AIAL----LDMNREALEKAEASVREKG----VEARSYVCDVTSEEAVIGT 72 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTT----SCEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHH
Confidence 4678889999999999999999886 2554 3556677776666665432 11211 111
Q ss_pred ---cccccCCCcEEEEecccCC--CCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 166 ---PYELFEDAEWALLIGAKPR--GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 166 ---~~eal~dADvVIitag~pr--k~g--~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
-.+.+..-|++|..+|... ++- ++.. ..+..| .-+.+...+.+.+. ..+.||+++-
T Consensus 73 ~~~~~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~--~~G~II~isS 142 (260)
T d1zema1 73 VDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ--NYGRIVNTAS 142 (260)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh--cCCCCCeeec
Confidence 1244568999999887542 221 1222 234444 33466666777663 5567777763
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.018 Score=49.90 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=67.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-------cCcccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYEL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-------t~~~ea 169 (337)
+.+.|+||++.+|.++|..|+..|. .|.+ .+++++.++..+.++......+..+++-. ..-.+.
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G~-----~Vv~----~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARGA-----KVIG----TATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcc
Confidence 3566779999999999999999886 2544 35566777766555532211110011000 011234
Q ss_pred cCCCcEEEEecccCCCCCC---chh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 FEDAEWALLIGAKPRGPGM---ERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 l~dADvVIitag~prk~g~---~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+..-|++|..+|....... +.. ..+..| ..+.+...+.+.+. ..+.||+++-
T Consensus 76 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~II~isS 137 (243)
T d1q7ba_ 76 FGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKK--RHGRIITIGS 137 (243)
T ss_dssp TCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred cCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHc--CCCEeeeecc
Confidence 5679999998875432211 111 234444 44567777777764 4567778773
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.32 E-value=0.026 Score=48.82 Aligned_cols=116 Identities=14% Similarity=0.059 Sum_probs=65.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe---cCcccccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG---INPYELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~---t~~~eal~dA 173 (337)
+++.|+||++-||.+++..|+..|. .|.+. ++++++++..+.++.... ....++.-. ..-.+.+..-
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga-----~V~~~----~r~~~~l~~~~~~~~~~~-~~~~Dv~~~~~v~~~~~~~g~i 75 (242)
T d1cyda_ 6 LRALVTGAGKGIGRDTVKALHASGA-----KVVAV----TRTNSDLVSLAKECPGIE-PVCVDLGDWDATEKALGGIGPV 75 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHSTTCE-EEECCTTCHHHHHHHHTTCCCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHhcCCCe-EEEEeCCCHHHHHHHHHHcCCC
Confidence 5788999999999999999999886 25542 456666665554443321 100000000 0112446789
Q ss_pred cEEEEecccCC-CCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 174 EWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 174 DvVIitag~pr-k~g--~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|++|..+|... ++- ++.. ..+..| ..+.+...+.+.+- ...+.+|+++-
T Consensus 76 DilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~-~~~g~ii~isS 134 (242)
T d1cyda_ 76 DLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINR-GVPGSIVNVSS 134 (242)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECC
T ss_pred eEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhh-cccCcccccch
Confidence 99999888643 221 1222 234444 33455566665443 34566777664
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=95.22 E-value=0.14 Score=40.12 Aligned_cols=24 Identities=8% Similarity=0.227 Sum_probs=20.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
|||+|+||+|.||+.++..+...+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~ 24 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKG 24 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHhcCC
Confidence 699999999999999987666544
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=95.05 E-value=0.021 Score=51.92 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=23.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|||.|+||+|+||++++..|+..+.
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~ 25 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQ 25 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC
Confidence 6999999999999999999988775
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.01 E-value=0.052 Score=47.43 Aligned_cols=111 Identities=10% Similarity=-0.037 Sum_probs=58.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc-chhhHHHhHHHhHhhhccCCcccEEEecCc---cccc--
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-RSLQALEGVAMELEDSLFPLLREVKIGINP---YELF-- 170 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d-~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~---~eal-- 170 (337)
+||-|+||+|+||++++..|...|. .|........ .+.+.++. +. ...++++...| .+.+
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~-----~V~~~~r~~~~~~~~~l~~----~~-----~~~~~~~~~~Dl~d~~~~~~ 66 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGY-----RVHGLVARRSSDTRWRLRE----LG-----IEGDIQYEDGDMADACSVQR 66 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCCSSCCCHHHHH----TT-----CGGGEEEEECCTTCHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-----EEEEEECCCCcccHHHHHH----hc-----ccCCcEEEEccccChHHhhh
Confidence 4899999999999999999988775 2322111111 11122221 11 11123322111 2211
Q ss_pred ----CCCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 171 ----EDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 171 ----~dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.+.++++.+++..... ..........|+.-...+.+.++++ ....+++..|
T Consensus 67 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~-~~~~~~i~~S 123 (321)
T d1rpna_ 67 AVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQF-SPETRFYQAS 123 (321)
T ss_dssp HHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTSEEEEEE
T ss_pred hhccccccccccccccccccccccchHHHHhhhhhchHHHHHHHHHh-CCCccccccc
Confidence 1355666665432211 1223445677877778888888887 4554666554
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.00 E-value=0.15 Score=44.16 Aligned_cols=112 Identities=10% Similarity=0.071 Sum_probs=69.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC--c------
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------ 166 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~--~------ 166 (337)
-+++.|+||++-||.++|..|+..|. .|.+. ++++++++..+.++.+.. . ++. +..| +
T Consensus 11 gK~alITGas~GIG~aia~~la~~Ga-----~V~~~----~r~~~~~~~~~~~l~~~g-~---~~~~~~~Dvs~~~~~~~ 77 (255)
T d1fmca_ 11 GKCAIITGAGAGIGKEIAITFATAGA-----SVVVS----DINADAANHVVDEIQQLG-G---QAFACRCDITSEQELSA 77 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTC-----EEEEE----ESCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHHcC-C---cEEEEEccCCCHHHHHH
Confidence 35788899999999999999999886 25542 456677777666666432 1 111 1111 1
Q ss_pred -----ccccCCCcEEEEecccCC-CCC-Cchhh---hHHhh----HHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 167 -----YELFEDAEWALLIGAKPR-GPG-MERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 167 -----~eal~dADvVIitag~pr-k~g-~~R~d---ll~~N----~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.+.+..-|++|..+|... ++- ++..+ .+..| ..+.+...+.+.+. .++.||+++
T Consensus 78 ~~~~~~~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~g~Ii~is 145 (255)
T d1fmca_ 78 LADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKN--GGGVILTIT 145 (255)
T ss_dssp HHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEC
T ss_pred HHHHHHHHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccc--ccccccccc
Confidence 234568999999887543 222 22222 24444 34566777888875 455666666
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=94.94 E-value=0.044 Score=47.84 Aligned_cols=117 Identities=13% Similarity=0.005 Sum_probs=68.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-------cCccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYE 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-------t~~~e 168 (337)
-+++.|+||++-||.++|..|+..|. .|.+. ++++++++..+.++......+..+++-. ..-.+
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga-----~V~~~----~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (254)
T d1hdca_ 5 GKTVIITGGARGLGAEAARQAVAAGA-----RVVLA----DVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYARE 75 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHH
Confidence 35789999999999999999999886 25543 4566676666555543221110011000 00123
Q ss_pred ccCCCcEEEEecccCC-CCC--Cc---hhhhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 LFEDAEWALLIGAKPR-GPG--ME---RAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 al~dADvVIitag~pr-k~g--~~---R~dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+..-|++|..+|... ++- .+ ..+.+..| .-+.+...+.+.+. ..+.||+++-
T Consensus 76 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~--~~G~II~isS 138 (254)
T d1hdca_ 76 EFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA--GGGSIVNISS 138 (254)
T ss_dssp HHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhc--CCCeeccccc
Confidence 4568999999887543 221 11 22334544 34566677777764 4567777773
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.92 E-value=0.018 Score=51.70 Aligned_cols=111 Identities=11% Similarity=0.003 Sum_probs=58.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc-cch-hhHHHhHHHhHhhhccCCcccEEEec-Ccccc----c
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS-ERS-LQALEGVAMELEDSLFPLLREVKIGI-NPYEL----F 170 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~-d~~-~~~l~g~a~DL~d~~~~~~~~v~i~t-~~~ea----l 170 (337)
.|.|+||+|+||++++..|+..+. .|.. +|. ... .+..... ..+.+ . ..++...+ .+.+. +
T Consensus 3 ~ILVTGatGfIG~~lv~~Ll~~g~-----~V~~--~d~~~~~~~~~~~~~-~~~~~---~-~v~~~~~Dl~d~~~l~~~~ 70 (347)
T d1z45a2 3 IVLVTGGAGYIGSHTVVELIENGY-----DCVV--ADNLSNSTYDSVARL-EVLTK---H-HIPFYEVDLCDRKGLEKVF 70 (347)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EECCSSCCTHHHHHH-HHHHT---S-CCCEEECCTTCHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCcC-----eEEE--EECCCCcchhHHHhH-Hhhcc---c-CCeEEEeecCCHHHHHHHH
Confidence 488999999999999999998774 2433 221 111 1111100 11111 1 01111110 12222 2
Q ss_pred C--CCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 171 E--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 171 ~--dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+ +.|+|+.+|+.+... ..........|......+.+..++. ... .+|+.|
T Consensus 71 ~~~~~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~-~i~-~~i~~S 124 (347)
T d1z45a2 71 KEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY-NVS-KFVFSS 124 (347)
T ss_dssp HHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TCC-EEEEEE
T ss_pred hccCCCEEEEccccccccccccCcccccccchhhhHHHHHHHHhc-ccc-eEEeec
Confidence 2 689999988754211 1123345667888888888888776 334 344443
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=94.91 E-value=0.06 Score=41.57 Aligned_cols=45 Identities=18% Similarity=0.153 Sum_probs=31.8
Q ss_pred ceeeeeeeccchhhhhhccCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 76 GVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 76 gv~~~~~~~~~~~~~~~~~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.||.+.--=+.+...+...+..+|+|||| |.+|..+|..|...+.
T Consensus 10 ~v~~lrtl~Da~~l~~~~~~~~~vvIIGg-G~iG~E~A~~l~~~g~ 54 (121)
T d1d7ya2 10 PVHTLRTLEDARRIQAGLRPQSRLLIVGG-GVIGLELAATARTAGV 54 (121)
T ss_dssp CEEECCSHHHHHHHHHHCCTTCEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CEEEeCCHHHHHHHHHhhhcCCeEEEECc-chhHHHHHHHhhcccc
Confidence 37766432222222444566789999995 9999999999998775
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=94.84 E-value=0.034 Score=48.71 Aligned_cols=100 Identities=22% Similarity=0.229 Sum_probs=55.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
+||.|+||+|+||++++..|+..+. .++.+ +.-.. .|+.+.. . +. ..-...+.|+|
T Consensus 3 kkIlITG~tGfiG~~l~~~L~~~g~------~vi~~-~~~~~--------~~~~~~~-~----~~----~~~~~~~~d~v 58 (315)
T d1e6ua_ 3 QRVFIAGHRGMVGSAIRRQLEQRGD------VELVL-RTRDE--------LNLLDSR-A----VH----DFFASERIDQV 58 (315)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTT------EEEEC-CCTTT--------CCTTCHH-H----HH----HHHHHHCCSEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCcC------EEEEe-cCchh--------ccccCHH-H----HH----HHHhhcCCCEE
Confidence 4899999999999999999988765 22222 21111 1111111 0 00 00011246778
Q ss_pred EEecccCCCC---CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 177 LLIGAKPRGP---GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 177 Iitag~prk~---g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+..++..... .....+....|+.....+.+.+.++ +-. .+|.+|
T Consensus 59 ~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~v~-~~i~~S 105 (315)
T d1e6ua_ 59 YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN-DVN-KLLFLG 105 (315)
T ss_dssp EECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-EEEEEC
T ss_pred EEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEEC
Confidence 7766432110 1123455678888888888888775 222 466665
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.81 E-value=0.18 Score=43.94 Aligned_cols=114 Identities=15% Similarity=0.113 Sum_probs=68.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC----------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN---------- 165 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~---------- 165 (337)
+.+.|+||++-||.++|..|+..|. .|.+. ++++++++..+.++.+.... ..++.. ..|
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga-----~V~l~----~r~~~~l~~~~~~l~~~~~~-~~~~~~~~~Dvs~~~~v~~~ 75 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQEGA-----NVTIT----GRSSERLEETRQIILKSGVS-EKQVNSVVADVTTEDGQDQI 75 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHTTTCC-GGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCcCcHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHhcCCC-CCceEEEEccCCCHHHHHHH
Confidence 4678889999999999999999886 25553 56677777777777654311 112221 111
Q ss_pred ---cccccCCCcEEEEecccCCC-C-C-----Cc---hhhhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 166 ---PYELFEDAEWALLIGAKPRG-P-G-----ME---RAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 166 ---~~eal~dADvVIitag~prk-~-g-----~~---R~dll~~N----~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
-.+.+..-|++|..+|.... + . ++ -...+..| ..+.+...+.+.+- .+.+|++.|
T Consensus 76 ~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~--~g~iI~~~S 147 (272)
T d1xkqa_ 76 INSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS--KGEIVNVSS 147 (272)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred HHHHHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc--CCccccccc
Confidence 12334578999998876432 1 1 11 11223444 33566667777663 566666655
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.79 E-value=0.053 Score=44.91 Aligned_cols=74 Identities=12% Similarity=0.103 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecC---cccccC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN---PYELFE 171 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~---~~eal~ 171 (337)
++.||.|||| |.+|..-+.....-|- .+.+ + |.+.++++.. +... +-.... ...+ ..+.++
T Consensus 31 ~pa~V~ViGa-GvaG~~A~~~A~~lGA-----~V~~--~--D~~~~~l~~l----~~~~-~~~~~~-~~~~~~~l~~~~~ 94 (168)
T d1pjca1 31 KPGKVVILGG-GVVGTEAAKMAVGLGA-----QVQI--F--DINVERLSYL----ETLF-GSRVEL-LYSNSAEIETAVA 94 (168)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--ESCHHHHHHH----HHHH-GGGSEE-EECCHHHHHHHHH
T ss_pred CCcEEEEECC-ChHHHHHHHHHhhCCC-----EEEE--E--eCcHHHHHHH----HHhh-ccccee-ehhhhhhHHHhhc
Confidence 5789999995 9999998887776664 2444 2 4455665533 2211 111111 2222 357899
Q ss_pred CCcEEEEecccCC
Q 019713 172 DAEWALLIGAKPR 184 (337)
Q Consensus 172 dADvVIitag~pr 184 (337)
+||+||-++-.|-
T Consensus 95 ~aDivI~aalipG 107 (168)
T d1pjca1 95 EADLLIGAVLVPG 107 (168)
T ss_dssp TCSEEEECCCCTT
T ss_pred cCcEEEEeeecCC
Confidence 9999999986653
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=94.78 E-value=0.035 Score=49.27 Aligned_cols=111 Identities=13% Similarity=0.010 Sum_probs=58.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc----cc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----EL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~----ea 169 (337)
+||.|+||+|+||++++..|+..|. .|... +++......... ..... + .+.. ..| ++ ++
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~g~-----~V~~~----~r~~~~~~~~~~-~~~~~-~---~i~~~~~Dl~d~~~l~~~ 74 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTMGA-----TVKGY----SLTAPTVPSLFE-TARVA-D---GMQSEIGDIRDQNKLLES 74 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESSCSSSSCHHH-HTTTT-T---TSEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----ECCCCccHHHHh-hhhcc-c---CCeEEEeeccChHhhhhh
Confidence 7999999999999999999998875 24432 222221111111 11001 1 1111 111 22 23
Q ss_pred cC--CCcEEEEecccCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 170 FE--DAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 170 l~--dADvVIitag~prk~g--~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++ +.|+|+..++.+.... ..-......|+.....+.+.+.+. .....++..+
T Consensus 75 ~~~~~~~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~-~~~~~~~~~s 130 (356)
T d1rkxa_ 75 IREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHV-GGVKAVVNIT 130 (356)
T ss_dssp HHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-CCCCEEEEEC
T ss_pred hhhchhhhhhhhhccccccccccCCccccccccccchhhhhhhhcc-cccccccccc
Confidence 33 4478887775432100 011234566777788888888886 3433444433
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.74 E-value=0.042 Score=45.80 Aligned_cols=75 Identities=12% Similarity=0.117 Sum_probs=44.5
Q ss_pred CCEEEEEc-CCCchHHHHHHHHHHcCCCCCCCceEEEeccccch--hhHHHhHHHhHhhhccCCcccEEEecCcccccCC
Q 019713 96 MVNIAVSG-AAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 96 ~~KI~IIG-AaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~--~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d 172 (337)
..||++|| +..+|..+++..+..-|+ .+.+..-+.- .+.....+.++... ....++++.+..+++++
T Consensus 5 ~lkia~vGD~~nnV~~Sli~~~~~~G~-------~l~l~~P~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~eai~~ 74 (185)
T d1dxha2 5 DISYAYLGDARNNMGNSLLLIGAKLGM-------DVRIAAPKALWPHDEFVAQCKKFAEE---SGAKLTLTEDPKEAVKG 74 (185)
T ss_dssp GCEEEEESCCSSHHHHHHHHHHHHTTC-------EEEEECCGGGSCCHHHHHHHHHHHHH---HTCEEEEESCHHHHTTT
T ss_pred CCEEEEEcCCcchHHHHHHHHHHHcCC-------EEEEEccHHHHhhhHHHHHHHHHhhc---cCCeEEEEeChhhcccc
Confidence 36999999 223788888888877553 3444332211 11111122222221 12367788888899999
Q ss_pred CcEEEEec
Q 019713 173 AEWALLIG 180 (337)
Q Consensus 173 ADvVIita 180 (337)
||+|...-
T Consensus 75 aDvVyt~~ 82 (185)
T d1dxha2 75 VDFVHTDV 82 (185)
T ss_dssp CSEEEECC
T ss_pred ccEEEeeh
Confidence 99987753
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=94.67 E-value=0.04 Score=47.84 Aligned_cols=112 Identities=11% Similarity=0.025 Sum_probs=68.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC----------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN---------- 165 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~---------- 165 (337)
+.+.|+||++-||.+++..|+..|. .|.+. +++.++++..+.++... .++.. ..|
T Consensus 7 K~alVTGas~GIG~aia~~la~~Ga-----~V~~~----~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~ 72 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVEEGA-----KVMIT----GRHSDVGEKAAKSVGTP-----DQIQFFQHDSSDEDGWTKL 72 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHCCT-----TTEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHhCCC-----CcEEEEEccCCCHHHHHHH
Confidence 4677889999999999999999886 25553 45666666555545321 12221 111
Q ss_pred ---cccccCCCcEEEEecccC-CCCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 166 ---PYELFEDAEWALLIGAKP-RGPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 166 ---~~eal~dADvVIitag~p-rk~g--~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
-.+.+..-|++|..+|.. +++- ++.. +.+..| .-..+...+.|.+. ..++.||+++-
T Consensus 73 ~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~-~~gg~Ii~isS 142 (251)
T d1zk4a1 73 FDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNK-GLGASIINMSS 142 (251)
T ss_dssp HHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS-SSCEEEEEECC
T ss_pred HHHHHHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhc-CCCCceEeeec
Confidence 123456789999988753 2221 2222 234444 34566777777775 45668788774
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=94.62 E-value=0.3 Score=42.13 Aligned_cols=113 Identities=16% Similarity=0.116 Sum_probs=66.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC--c-------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------- 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~--~------- 166 (337)
+.+.|+||++-||.+++..|+..|. .|.+. +++.++++....++...... .++. +..| +
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga-----~V~i~----~r~~~~l~~~~~~~~~~~~~--~~~~~~~~Dvt~~~~v~~~ 73 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGA-----KLSLV----DVSSEGLEASKAAVLETAPD--AEVLTTVADVSDEAQVEAY 73 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHHCTT--CCEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHhhCCC--CeEEEEeccCCCHHHHHHH
Confidence 4677889999999999999999886 25553 55666776665555543211 1222 1111 1
Q ss_pred ----ccccCCCcEEEEecccC--CCCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 167 ----YELFEDAEWALLIGAKP--RGPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 167 ----~eal~dADvVIitag~p--rk~g--~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.+.+..-|++|..+|.. .++- ++.. ..+..| .-+.+...+.+++. ..+.||+++
T Consensus 74 ~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~G~Ii~is 142 (258)
T d1iy8a_ 74 VTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ--GSGMVVNTA 142 (258)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEEC
T ss_pred HHHHHHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhh--cCCCCcccc
Confidence 23356799999988853 2221 2222 234444 33455666777664 445666766
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.61 E-value=0.057 Score=47.95 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.||.|+||+|+||++++..|+..+.
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~ 27 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGY 27 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcC
Confidence 4899999999999999999998775
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=94.51 E-value=0.05 Score=44.59 Aligned_cols=71 Identities=13% Similarity=0.138 Sum_probs=48.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+..+|.|+|| |.+|.++++.|..++ . .|.+ ..++.++++..+..+.... ++.....+...+.++|
T Consensus 17 ~~k~vlIlGa-GGaarai~~aL~~~~--~---~i~I----~nR~~~~a~~l~~~~~~~~-----~~~~~~~~~~~~~~~d 81 (171)
T d1p77a1 17 PNQHVLILGA-GGATKGVLLPLLQAQ--Q---NIVL----ANRTFSKTKELAERFQPYG-----NIQAVSMDSIPLQTYD 81 (171)
T ss_dssp TTCEEEEECC-SHHHHTTHHHHHHTT--C---EEEE----EESSHHHHHHHHHHHGGGS-----CEEEEEGGGCCCSCCS
T ss_pred CCCEEEEECC-cHHHHHHHHHHcccC--c---eeee----ccchHHHHHHHHHHHhhcc-----ccchhhhccccccccc
Confidence 4568999995 999999999998743 1 2544 3677788887766555321 2333333445678999
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+||.+.
T Consensus 82 iiIN~t 87 (171)
T d1p77a1 82 LVINAT 87 (171)
T ss_dssp EEEECC
T ss_pred eeeecc
Confidence 999874
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=94.51 E-value=0.075 Score=43.20 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+.++|.|+|| |-.+.++++.|...+. .|.+ .+++.++++..+-.+.+.. .+.....+.....++|
T Consensus 17 ~~k~vlIlGa-GGaarai~~al~~~g~-----~i~I----~nRt~~ka~~l~~~~~~~~-----~~~~~~~~~~~~~~~d 81 (170)
T d1nyta1 17 PGLRILLIGA-GGASRGVLLPLLSLDC-----AVTI----TNRTVSRAEELAKLFAHTG-----SIQALSMDELEGHEFD 81 (170)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----ECSSHHHHHHHHHHTGGGS-----SEEECCSGGGTTCCCS
T ss_pred CCCEEEEECC-cHHHHHHHHHhcccce-----EEEe----ccchHHHHHHHHHHHhhcc-----cccccccccccccccc
Confidence 3468999995 9999999999988764 1444 3667777776554443221 3444333334457899
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+||.+-
T Consensus 82 liIN~T 87 (170)
T d1nyta1 82 LIINAT 87 (170)
T ss_dssp EEEECC
T ss_pred eeeccc
Confidence 999863
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=94.49 E-value=0.019 Score=50.15 Aligned_cols=115 Identities=15% Similarity=0.021 Sum_probs=66.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-------cCcccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYEL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-------t~~~ea 169 (337)
+++.|+||++-||.++|..|+..|. .|.+ .++++++++..+.++.+.......+++-. ..-.+.
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga-----~V~~----~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 77 (253)
T d1hxha_ 7 KVALVTGGASGVGLEVVKLLLGEGA-----KVAF----SDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRR 77 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHH
Confidence 4677779999999999999999886 2554 24566777766665543221111111000 011244
Q ss_pred cCCCcEEEEecccCCC-C--CCchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 FEDAEWALLIGAKPRG-P--GMERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 l~dADvVIitag~prk-~--g~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+..-|++|..+|.... + ..+.. ..+..| .-+.+...+.|++ .++.||+++-
T Consensus 78 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~---~~G~Iv~isS 138 (253)
T d1hxha_ 78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKE---TGGSIINMAS 138 (253)
T ss_dssp HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT---TCEEEEEECC
T ss_pred hCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHh---cCCceecccc
Confidence 5678999998885432 1 11221 234444 3456666777754 3467777774
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.42 E-value=0.034 Score=49.29 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=22.4
Q ss_pred CEE-EEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNI-AVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI-~IIGAaG~VG~~la~~L~~~~l 121 (337)
+|| -|+||+|+||++++..|...|.
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~ 26 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGY 26 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcC
Confidence 489 5999999999999999998875
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=94.33 E-value=0.05 Score=46.90 Aligned_cols=154 Identities=17% Similarity=0.108 Sum_probs=81.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-------cCcccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYEL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-------t~~~ea 169 (337)
+++.|+||++.+|..+|..|+..|. .|.+. +++.++++....++..-...+..+++-. ..-.+.
T Consensus 6 K~alItGas~GIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~ 76 (241)
T d2a4ka1 6 KTILVTGAASGIGRAALDLFAREGA-----SLVAV----DREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEE 76 (241)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 5788889999999999999999886 25553 4566666655444432110000000000 011234
Q ss_pred cCCCcEEEEecccC-CCCC--Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCe
Q 019713 170 FEDAEWALLIGAKP-RGPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN 243 (337)
Q Consensus 170 l~dADvVIitag~p-rk~g--~~R---~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kv 243 (337)
+..-|++|..+|.+ +++- .+. .+.+..|..-.-.+.+....+......+++++.-.-....-..-+
T Consensus 77 ~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~~~~~Y-------- 148 (241)
T d2a4ka1 77 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFGLAHY-------- 148 (241)
T ss_dssp HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHHHHHHH--------
T ss_pred hCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccccCcccc--------
Confidence 56799999987754 3221 222 234666666555566665555444556666665321110000000
Q ss_pred EEecCchhHHHHHHHHHHHhCCCccccc
Q 019713 244 FHALTRLDENRAKCQLALKAGVFYDKVS 271 (337)
Q Consensus 244 IG~gT~LDs~R~~~~lA~~lgv~~~~V~ 271 (337)
..+.---..+-+.+|++++ +..|+
T Consensus 149 --~~sK~al~~lt~~lA~el~--~~gIr 172 (241)
T d2a4ka1 149 --AAGKLGVVGLARTLALELA--RKGVR 172 (241)
T ss_dssp --HHCSSHHHHHHHHHHHHHT--TTTCE
T ss_pred --chhhHHHHHHHHHHHHHHh--HhCCE
Confidence 1111223467888899988 44454
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=94.22 E-value=0.36 Score=41.65 Aligned_cols=113 Identities=13% Similarity=0.060 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--c------
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~------ 166 (337)
-++|.|+||++.||.+++..|+..|. .|.+ .++++++++..+.++.+... ++.. ..| +
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~-----~V~i----~~r~~~~l~~~~~~~~~~~~----~~~~~~~D~s~~~~~~~ 72 (258)
T d1ae1a_ 6 GTTALVTGGSKGIGYAIVEELAGLGA-----RVYT----CSRNEKELDECLEIWREKGL----NVEGSVCDLLSRTERDK 72 (258)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTC----CEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCC----CceEEEeecCCHHHHHH
Confidence 35899999999999999999999886 2555 35566777766555554321 1111 111 1
Q ss_pred -----cccc-CCCcEEEEecccCC-CCC--Cch---hhhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 -----YELF-EDAEWALLIGAKPR-GPG--MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 -----~eal-~dADvVIitag~pr-k~g--~~R---~dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+ ..-|++|..+|... .+- .+. ...+..| ....+.+.+.+.+- ..+.+|+++-
T Consensus 73 ~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~--~~g~ii~isS 143 (258)
T d1ae1a_ 73 LMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS--QNGNVIFLSS 143 (258)
T ss_dssp HHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TSEEEEEECC
T ss_pred HHHHHHHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccc--cccccccccc
Confidence 1223 23778888777543 221 121 1223333 34456666777764 5566677764
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=94.05 E-value=0.094 Score=45.61 Aligned_cols=111 Identities=8% Similarity=0.057 Sum_probs=66.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC----------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN---------- 165 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~---------- 165 (337)
+.+.|+||++-||..+|..|+..|. .|.+ .++++++++..+.++.... .+. +..|
T Consensus 7 KvalITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~~~~~~~~l~~~~-----~~~~~~~Dv~~~~~v~~~ 72 (268)
T d2bgka1 7 KVAIITGGAGGIGETTAKLFVRYGA-----KVVI----ADIADDHGQKVCNNIGSPD-----VISFVHCDVTKDEDVRNL 72 (268)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCCTT-----TEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhcCCC-----ceEEEEccCCCHHHHHHH
Confidence 4677889999999999999999885 2554 3556677776666665321 111 1111
Q ss_pred ---cccccCCCcEEEEecccC-CCCC----Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 166 ---PYELFEDAEWALLIGAKP-RGPG----MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 166 ---~~eal~dADvVIitag~p-rk~g----~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
-.+.+...|++|..+|.. ..+. .+.. ..+..| .-+.+...+.|.+. ..+.+|+++.
T Consensus 73 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~g~ii~iss 143 (268)
T d2bgka1 73 VDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPA--KKGSIVFTAS 143 (268)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGG--TCEEEEEECC
T ss_pred HHHHHHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhc--CCCCcccccc
Confidence 113455789999988753 2221 2222 234444 34566667777764 4556666664
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=94.00 E-value=0.3 Score=42.09 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=67.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC--c-------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------- 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~--~------- 166 (337)
+.+.|+||++-||.++|..|+..|. .|.+ .++++++++..+.++.... . ++. +..| +
T Consensus 9 K~alITGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~l~~~~~~~~~~g-~---~~~~~~~Dv~~~~~v~~~ 75 (259)
T d2ae2a_ 9 CTALVTGGSRGIGYGIVEELASLGA-----SVYT----CSRNQKELNDCLTQWRSKG-F---KVEASVCDLSSRSERQEL 75 (259)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---EEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---CceEEEeeCCCHHHHHHH
Confidence 5788999999999999999999886 2554 2566777776666665432 1 111 1111 1
Q ss_pred ----ccccC-CCcEEEEecccCC-CCC--Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 ----YELFE-DAEWALLIGAKPR-GPG--MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 ----~eal~-dADvVIitag~pr-k~g--~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+. .-|++|..+|... .+- ++. ...+..|+ .+.+...+.+.+. ..+.||+++-
T Consensus 76 ~~~~~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~Ii~isS 145 (259)
T d2ae2a_ 76 MNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS--ERGNVVFISS 145 (259)
T ss_dssp HHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--SSEEEEEECC
T ss_pred HHHHHHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhh--cccccccccc
Confidence 12234 4799999888543 221 122 22355553 3456666667663 5667777763
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.96 E-value=0.038 Score=48.12 Aligned_cols=114 Identities=13% Similarity=0.140 Sum_probs=66.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-------ecCcccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-------GINPYEL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-------~t~~~ea 169 (337)
+.+.|+||++-||.++|..|+..|. .|.+ .++++++++..+.++.+.. .+..+++- ...-.+.
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~~~~~~~~~~~~~-~~~~Dvs~~~~v~~~~~~~~~~ 76 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNSGA-----RVVI----CDKDESGGRALEQELPGAV-FILCDVTQEDDVKTLVSETIRR 76 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHCTTEE-EEECCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHhcCCCe-EEEccCCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999886 2554 2556677766555444322 10001000 0011244
Q ss_pred cCCCcEEEEecccCCCCC----Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 FEDAEWALLIGAKPRGPG----MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 l~dADvVIitag~prk~g----~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+..-|++|..+|....++ .+.. ..+..| ..+.+...+.|++. . +.||+++-
T Consensus 77 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~-G~Ii~isS 138 (250)
T d1ydea1 77 FGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--Q-GNVINISS 138 (250)
T ss_dssp HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--T-CEEEEECC
T ss_pred cCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC--C-CCCccccc
Confidence 567899999887532222 1222 224444 44567777777764 3 46667663
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.93 E-value=0.24 Score=42.80 Aligned_cols=113 Identities=14% Similarity=0.080 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--c------
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~------ 166 (337)
-+++.|+||++.||.++|..|+..|. .|.+ .++++++++..+.++..... ++.. ..| +
T Consensus 8 gK~alVTGas~GIG~aiA~~la~~Ga-----~V~~----~~r~~~~l~~~~~~~~~~~~----~~~~~~~Dv~~~~~v~~ 74 (259)
T d1xq1a_ 8 AKTVLVTGGTKGIGHAIVEEFAGFGA-----VIHT----CARNEYELNECLSKWQKKGF----QVTGSVCDASLRPEREK 74 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTC----CEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCC----ceEEEeccCCCHHHHHH
Confidence 35788999999999999999999886 2554 25566777766666654321 1111 111 1
Q ss_pred -----ccccC-CCcEEEEecccCC-CC--CCchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 -----YELFE-DAEWALLIGAKPR-GP--GMERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 -----~eal~-dADvVIitag~pr-k~--g~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+. .-|++|..+|... ++ ..+.. ..+..| ..+.+...+.|++. ..+.||+++-
T Consensus 75 ~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~G~Iv~isS 145 (259)
T d1xq1a_ 75 LMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS--GCGNIIFMSS 145 (259)
T ss_dssp HHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SSCEEEEEC-
T ss_pred HHHHHHHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccc--cccccccccc
Confidence 12233 4799999887542 22 12222 234444 34556666777764 4456677663
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=93.87 E-value=0.33 Score=36.41 Aligned_cols=69 Identities=12% Similarity=-0.035 Sum_probs=41.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.+||.|||+ |.+|..-+..|...+. .+.+ ++.+..++. .. +.+.. . ....-..-..+++.++++
T Consensus 12 ~k~vlVvG~-G~va~~ka~~ll~~ga-----~v~v--~~~~~~~~~-~~----~~~~~-~--i~~~~~~~~~~dl~~~~l 75 (113)
T d1pjqa1 12 DRDCLIVGG-GDVAERKARLLLEAGA-----RLTV--NALTFIPQF-TV----WANEG-M--LTLVEGPFDETLLDSCWL 75 (113)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTB-----EEEE--EESSCCHHH-HH----HHTTT-S--CEEEESSCCGGGGTTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----eEEE--EeccCChHH-HH----HHhcC-C--ceeeccCCCHHHhCCCcE
Confidence 369999995 9999999999998775 2443 333322221 11 11111 0 112222234578999999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
|+.+.
T Consensus 76 v~~at 80 (113)
T d1pjqa1 76 AIAAT 80 (113)
T ss_dssp EEECC
T ss_pred EeecC
Confidence 98874
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=93.85 E-value=0.41 Score=41.56 Aligned_cols=75 Identities=11% Similarity=0.125 Sum_probs=48.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC--c-------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------- 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~--~------- 166 (337)
+.+.|+||+|.||.++|..|+..|. .|.+ .+++.++++..+.++.... . .++. +..| +
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga-----~Vii----~~r~~~~l~~~~~~l~~~~-g--~~~~~~~~D~~~~~~v~~~ 93 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGA-----QCVI----ASRKMDVLKATAEQISSQT-G--NKVHAIQCDVRDPDMVQNT 93 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHH-S--SCEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-----EEEE----EECCHHHHHHHHHHHHHhc-C--CceEEEEecccChHHHHHH
Confidence 5688899999999999999999885 2554 3556667666666665432 1 1111 1111 1
Q ss_pred ----ccccCCCcEEEEecccC
Q 019713 167 ----YELFEDAEWALLIGAKP 183 (337)
Q Consensus 167 ----~eal~dADvVIitag~p 183 (337)
.+.+...|++|..+|..
T Consensus 94 ~~~~~~~~g~iDilvnnAg~~ 114 (294)
T d1w6ua_ 94 VSELIKVAGHPNIVINNAAGN 114 (294)
T ss_dssp HHHHHHHTCSCSEEEECCCCC
T ss_pred hhhhhhhccccchhhhhhhhc
Confidence 23346789999888754
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.74 E-value=0.0081 Score=51.77 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 2 gK~vlITGas~GIG~a~a~~l~~~G~ 27 (236)
T d1dhra_ 2 ARRVLVYGGRGALGSRCVQAFRARNW 27 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 36899999999999999999998875
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=93.63 E-value=0.02 Score=49.39 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+..||.|+||+|++|++++..|...|.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~ 28 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGH 28 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC
Confidence 456899999999999999999998774
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.58 E-value=0.1 Score=42.61 Aligned_cols=75 Identities=25% Similarity=0.286 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC-cccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~t~~~eal~dA 173 (337)
+-.+|.|+|| |.++.++++.|...+ .|.+ ..++.++++..+.++....... ...+.. .+....+.++
T Consensus 17 ~~k~vlIlGa-GG~arai~~aL~~~~------~i~I----~nR~~~ka~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 84 (177)
T d1nvta1 17 KDKNIVIYGA-GGAARAVAFELAKDN------NIII----ANRTVEKAEALAKEIAEKLNKKFGEEVKF-SGLDVDLDGV 84 (177)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHTSSS------EEEE----ECSSHHHHHHHHHHHHHHHTCCHHHHEEE-ECTTCCCTTC
T ss_pred CCCEEEEECC-cHHHHHHHHHHcccc------ceee----ehhhhhHHHHHHHHHHHhhchhhhhhhhh-hhhhhccchh
Confidence 4568999995 999999999884322 2544 3667788887777776543221 123333 2345667899
Q ss_pred cEEEEecc
Q 019713 174 EWALLIGA 181 (337)
Q Consensus 174 DvVIitag 181 (337)
|++|.+-.
T Consensus 85 dliIn~tp 92 (177)
T d1nvta1 85 DIIINATP 92 (177)
T ss_dssp CEEEECSC
T ss_pred hhhccCCc
Confidence 99998743
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.57 E-value=0.084 Score=43.82 Aligned_cols=87 Identities=22% Similarity=0.207 Sum_probs=51.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
.+|+||| .|.||..++..+..-+. .|.. +| +... + .. .....+..+.+++||+|
T Consensus 43 k~vgIiG-~G~IG~~va~~l~~~g~-----~v~~--~d--~~~~--~--------~~------~~~~~~l~ell~~sDiv 96 (181)
T d1qp8a1 43 EKVAVLG-LGEIGTRVGKILAALGA-----QVRG--FS--RTPK--E--------GP------WRFTNSLEEALREARAA 96 (181)
T ss_dssp CEEEEES-CSTHHHHHHHHHHHTTC-----EEEE--EC--SSCC--C--------SS------SCCBSCSHHHHTTCSEE
T ss_pred ceEEEec-cccccccceeeeecccc-----cccc--cc--cccc--c--------cc------eeeeechhhhhhccchh
Confidence 5899999 59999999998876554 1332 33 2211 0 00 01113456889999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
++.. |..+ +...++. .+.++.. ++++++|+++=
T Consensus 97 ~~~~--pl~~--~t~~li~---------~~~l~~m-k~~ailIN~~R 129 (181)
T d1qp8a1 97 VCAL--PLNK--HTRGLVK---------YQHLALM-AEDAVFVNVGR 129 (181)
T ss_dssp EECC--CCST--TTTTCBC---------HHHHTTS-CTTCEEEECSC
T ss_pred hccc--cccc--ccccccc---------cceeeec-cccceEEeccc
Confidence 9864 3222 1122222 1334444 68999999874
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=93.53 E-value=0.1 Score=43.36 Aligned_cols=95 Identities=16% Similarity=0.224 Sum_probs=53.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
-.+|+|+| .|.||..++..|..-+. .+. .+|......... +.. .+....+..+.+++||+
T Consensus 44 ~~~vgiiG-~G~IG~~va~~l~~fg~-----~v~--~~d~~~~~~~~~-------~~~-----~~~~~~~l~~~l~~sD~ 103 (188)
T d2naca1 44 AMHVGTVA-AGRIGLAVLRRLAPFDV-----HLH--YTDRHRLPESVE-------KEL-----NLTWHATREDMYPVCDV 103 (188)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHGGGTC-----EEE--EECSSCCCHHHH-------HHH-----TCEECSSHHHHGGGCSE
T ss_pred ccceeecc-ccccchhhhhhhhccCc-----eEE--EEeecccccccc-------ccc-----cccccCCHHHHHHhccc
Confidence 46999999 59999999998865443 133 333221111111 000 12223456788999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
|++..... + +...++.+ +.++.. ++++++|+++--
T Consensus 104 v~~~~plt--~--~T~~li~~---------~~l~~m-k~ga~lIN~aRG 138 (188)
T d2naca1 104 VTLNCPLH--P--ETEHMIND---------ETLKLF-KRGAYIVNTARG 138 (188)
T ss_dssp EEECSCCC--T--TTTTCBSH---------HHHTTS-CTTEEEEECSCG
T ss_pred hhhccccc--c--cchhhhHH---------HHHHhC-CCCCEEEecCch
Confidence 98875221 1 11111111 223343 688999999853
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.49 E-value=0.16 Score=45.14 Aligned_cols=117 Identities=12% Similarity=0.121 Sum_probs=67.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc-----chhhHHHhHHHhHhhhccCCcccEEEec-------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-----RSLQALEGVAMELEDSLFPLLREVKIGI------- 164 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d-----~~~~~l~g~a~DL~d~~~~~~~~v~i~t------- 164 (337)
+.+.|+||++-||.++|..|+..|. .|.+...+.+ +..+.++..+.++...... ....+..
T Consensus 8 KvalITGas~GIG~aiA~~la~~Ga-----~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~ 80 (302)
T d1gz6a_ 8 RVVLVTGAGGGLGRAYALAFAERGA-----LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGK--AVANYDSVEAGEKL 80 (302)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCE--EEEECCCGGGHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-----EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccc--cccccchHHHHHHH
Confidence 4577889999999999999999886 2555432221 2244455555544432211 1111111
Q ss_pred --CcccccCCCcEEEEecccCCCCC---Cch---hhhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 165 --NPYELFEDAEWALLIGAKPRGPG---MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 165 --~~~eal~dADvVIitag~prk~g---~~R---~dll~~N----~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.-.+.+..-|++|..||..+..- ++. ...+..| ..+.+...+.|.+. ..+.||+++
T Consensus 81 v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~~G~IV~is 148 (302)
T d1gz6a_ 81 VKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ--NYGRIIMTA 148 (302)
T ss_dssp HHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCEEEEEEC
T ss_pred HHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhC--CCcEEEEeC
Confidence 01234567999999988654211 121 1234444 44677777888775 456777777
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.48 E-value=0.25 Score=42.71 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=36.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhh
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS 152 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~ 152 (337)
+-+++.|+||++-+|.++|..|+..|. .|.+ .++++++++..+.++...
T Consensus 13 ~GK~alITGassGIG~aiA~~la~~G~-----~Vil----~~r~~~~l~~~~~~~~~~ 61 (269)
T d1xu9a_ 13 QGKKVIVTGASKGIGREMAYHLAKMGA-----HVVV----TARSKETLQKVVSHCLEL 61 (269)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHhhh
Confidence 346899999999999999999999885 2554 356777777766655543
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=93.45 E-value=0.082 Score=44.38 Aligned_cols=92 Identities=10% Similarity=0.071 Sum_probs=51.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
-++|+||| .|.||..+|..+..-|. .|. .+|.....+.. . .. .+....+..+.++.||+
T Consensus 49 gktvgIiG-~G~IG~~va~~l~~fg~-----~v~--~~d~~~~~~~~--~------~~-----~~~~~~~l~~ll~~sD~ 107 (193)
T d1mx3a1 49 GETLGIIG-LGRVGQAVALRAKAFGF-----NVL--FYDPYLSDGVE--R------AL-----GLQRVSTLQDLLFHSDC 107 (193)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC-----EEE--EECTTSCTTHH--H------HH-----TCEECSSHHHHHHHCSE
T ss_pred CceEEEec-cccccccceeeeecccc-----cee--eccCcccccch--h------hh-----ccccccchhhccccCCE
Confidence 36999999 59999999998865443 233 23322111110 0 00 11222345677899999
Q ss_pred EEEeccc-CCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 176 ALLIGAK-PRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 176 VIitag~-prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|++.... +...+ ++ |.+ .++.. .+++++|+++=
T Consensus 108 i~~~~plt~~T~~-----li--~~~-------~l~~m-k~~a~lIN~sR 141 (193)
T d1mx3a1 108 VTLHCGLNEHNHH-----LI--NDF-------TVKQM-RQGAFLVNTAR 141 (193)
T ss_dssp EEECCCCCTTCTT-----SB--SHH-------HHTTS-CTTEEEEECSC
T ss_pred EEEeecccccchh-----hh--hHH-------HHhcc-CCCCeEEecCC
Confidence 9987521 11111 11 211 23343 68999999884
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=93.45 E-value=0.39 Score=41.36 Aligned_cols=113 Identities=12% Similarity=0.104 Sum_probs=65.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC-----------
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN----------- 165 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~----------- 165 (337)
.+.|+||++-||.++|..|+..|. .|.+ .++++++++..+.++.+.... ..++... .|
T Consensus 7 valVTGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~l~~~~~~l~~~~~~-~~~~~~~~~Dvt~~~~v~~~~ 76 (264)
T d1spxa_ 7 VAIITGSSNGIGRATAVLFAREGA-----KVTI----TGRHAERLEETRQQILAAGVS-EQNVNSVVADVTTDAGQDEIL 76 (264)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTCC-GGGEEEEECCTTSHHHHHHHH
T ss_pred EEEEeCcCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCC-cCceEEEEccCCCHHHHHHHH
Confidence 556779999999999999999886 2555 356777777777777654311 1122211 11
Q ss_pred --cccccCCCcEEEEecccCC-----CCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 166 --PYELFEDAEWALLIGAKPR-----GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 166 --~~eal~dADvVIitag~pr-----k~g--~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
-.+.+..-|++|..+|... ++. ++.. ..+..| ..+.+...+.+++. .+.+|++.|
T Consensus 77 ~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~--~g~iI~~~S 147 (264)
T d1spxa_ 77 STTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST--KGEIVNISS 147 (264)
T ss_dssp HHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred HHHHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc--cCcceeeee
Confidence 1233457899999887531 111 1211 234444 33566777777763 455655554
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.41 E-value=0.07 Score=46.02 Aligned_cols=110 Identities=10% Similarity=0.009 Sum_probs=63.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec--------Cccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--------NPYE 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t--------~~~e 168 (337)
+++.|+||++.+|.+++..|+..|. .|++. ++++++++....... .+..... ...+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~-----~Vi~~----~r~~~~l~~~~~~~~-------~~~~~~d~~~~~~~~~~~~ 70 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFAREGA-----KVIAT----DINESKLQELEKYPG-------IQTRVLDVTKKKQIDQFAN 70 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHGGGGGSTT-------EEEEECCTTCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-----EEEEE----eCCHHHHHHHHhccC-------Cceeeeecccccccccccc
Confidence 4677789999999999999999885 25553 455555543221111 1111110 1234
Q ss_pred ccCCCcEEEEecccCCC-CC--Cchhh---hHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 169 LFEDAEWALLIGAKPRG-PG--MERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 169 al~dADvVIitag~prk-~g--~~R~d---ll~~N----~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
.+..-|++|..+|.+.. +- ++..+ .+..| ..+.+.+.+.+.+- +++.||+++..
T Consensus 71 ~~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~--~~g~Ii~isS~ 134 (245)
T d2ag5a1 71 EVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ--KSGNIINMSSV 134 (245)
T ss_dssp HCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCS
T ss_pred ccccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccC--CCceeeeeech
Confidence 45689999998886542 11 12222 23333 34566667777774 56677777643
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=93.40 E-value=0.12 Score=42.73 Aligned_cols=74 Identities=15% Similarity=0.119 Sum_probs=43.8
Q ss_pred CCEEEEEcCCC--chHHHHHHHHHHcCCCCCCCceEEEeccccch--hhHHHhHHHhHhhhccCCcccEEEecCcccccC
Q 019713 96 MVNIAVSGAAG--MIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (337)
Q Consensus 96 ~~KI~IIGAaG--~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~--~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~ 171 (337)
..||+++| -| +|..+++..+..-|. .+.+..-+.- .+.+...+.+... .....+.++.+..++++
T Consensus 5 ~l~i~~vG-D~~nnv~~Sli~~~~~~g~-------~l~~~~P~~~~~~~~~~~~~~~~~~---~~g~~~~~~~d~~~a~~ 73 (183)
T d1duvg2 5 EMTLVYAG-DARNNMGNSMLEAAALTGL-------DLRLVAPQACWPEAALVTECRALAQ---QNGGNITLTEDVAKGVE 73 (183)
T ss_dssp GCEEEEES-CTTSHHHHHHHHHHHHHCC-------EEEEECCGGGCCCHHHHHHHHHHHH---HTTCEEEEESCHHHHHT
T ss_pred CCEEEEEc-CCccHHHHHHHHHHHHcCC-------EEEEEechHhhhhHHHHHHHHHHHH---hcCCceEEEechhhccc
Confidence 37999999 45 588888887776553 3333332211 1112122222221 12246777778889999
Q ss_pred CCcEEEEec
Q 019713 172 DAEWALLIG 180 (337)
Q Consensus 172 dADvVIita 180 (337)
++|+|..+-
T Consensus 74 ~aDvvyt~~ 82 (183)
T d1duvg2 74 GADFIYTDV 82 (183)
T ss_dssp TCSEEEECC
T ss_pred cCCEEEEEe
Confidence 999988764
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=93.34 E-value=0.24 Score=42.65 Aligned_cols=114 Identities=16% Similarity=0.089 Sum_probs=64.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ec---C-------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI---N------- 165 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t---~------- 165 (337)
+.+.|+||++-||.++|..|+..|. .|.+. +.. +.+.++....++.... . .++.. .. +
T Consensus 5 K~alITGas~GIG~aiA~~la~~Ga-----~V~~~--~r~-~~~~~~~~~~~~~~~~-g--~~~~~~~~Dv~~~~~v~~~ 73 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAAQGA-----DIVLN--GFG-DAAEIEKVRAGLAAQH-G--VKVLYDGADLSKGEAVRGL 73 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE--CCS-CHHHHHHHHHHHHHHH-T--SCEEEECCCTTSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE--eCC-cHHHHHHHHHHHHHhc-C--CcEEEEECCCCCHHHHHHH
Confidence 4677889999999999999999886 25543 221 2344444444443221 1 11111 01 1
Q ss_pred ---cccccCCCcEEEEecccCCCCC---Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 166 ---PYELFEDAEWALLIGAKPRGPG---MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 166 ---~~eal~dADvVIitag~prk~g---~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
-.+.+..-|++|..+|...... .+.. +.+..| ....+...+.+.+. ..+.||+++-
T Consensus 74 ~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~G~Iv~isS 142 (260)
T d1x1ta1 74 VDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQ--GFGRIINIAS 142 (260)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhc--CCceEeeccc
Confidence 1233457899999888643211 1111 234444 44567777888774 4567777763
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.30 E-value=0.52 Score=40.31 Aligned_cols=114 Identities=14% Similarity=0.039 Sum_probs=66.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--c-------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------- 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~------- 166 (337)
+.+.|+||++-+|.++|..|+..|. .|.+ .+++.++++..+.++.+.. + ..++.. ..| +
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~Dv~~~~~v~~~ 72 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGA-----KVAL----VDWNLEAGVQCKAALHEQF-E-PQKTLFIQCDVADQQQLRDT 72 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHTTTS-C-GGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHhc-C-CCcEEEEEeecCCHHHHHHH
Confidence 4677889999999999999999886 2555 3556666666655555422 1 112221 111 1
Q ss_pred ----ccccCCCcEEEEecccCCCCCCchhhhHHhhH----HHHHHHHHHHHhhc-CCCeEEEEeCC
Q 019713 167 ----YELFEDAEWALLIGAKPRGPGMERAGLLDING----QIFAEQGKALNAVA-SRNVKVIVVGN 223 (337)
Q Consensus 167 ----~eal~dADvVIitag~prk~g~~R~dll~~N~----~I~~~i~~~I~~~a-~p~aivIvvtN 223 (337)
.+.+..-|++|..+|..... +-.+.+..|. ...+...+.+.+.. ...+.||+++-
T Consensus 73 ~~~~~~~~G~iDilVnnAg~~~~~--~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS 136 (254)
T d2gdza1 73 FRKVVDHFGRLDILVNNAGVNNEK--NWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS 136 (254)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCSS--SHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred HHHHHHHcCCcCeecccccccccc--cchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeecc
Confidence 13345789999988864322 2223344443 44555566665531 22467777763
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=93.23 E-value=0.31 Score=41.57 Aligned_cols=118 Identities=15% Similarity=0.121 Sum_probs=69.1
Q ss_pred EE-EEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-Eec-----------
Q 019713 98 NI-AVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGI----------- 164 (337)
Q Consensus 98 KI-~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t----------- 164 (337)
+| .|+||++-||.++|..|+..|.---.....+.+ .+++.+.++..+.++.... . ++. +..
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~--~~r~~~~l~~~~~~~~~~g-~---~~~~~~~Dvt~~~~v~~~ 75 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVL--SSRTAADLEKISLECRAEG-A---LTDTITADISDMADVRRL 75 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEE--EESCHHHHHHHHHHHHTTT-C---EEEEEECCTTSHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEE--EeCCHHHHHHHHHHHHhcC-C---cEEEEEecCCCHHHHHHH
Confidence 54 578999999999999999887520000122223 3567777777777776432 1 111 111
Q ss_pred --CcccccCCCcEEEEecccCCCCC---Cc---hhhhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 165 --NPYELFEDAEWALLIGAKPRGPG---ME---RAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 165 --~~~eal~dADvVIitag~prk~g---~~---R~dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.-.+.+..-|++|..+|...... .+ -...+..| .-+.+...+.|++. ..+.||+++.
T Consensus 76 ~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~G~Ii~isS 144 (240)
T d2bd0a1 76 TTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ--HSGHIFFITS 144 (240)
T ss_dssp HHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhc--CCCceEEEec
Confidence 11244567999999887643211 11 12234444 34667777888774 5567777774
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=93.23 E-value=0.052 Score=44.17 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=17.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHH
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLA 117 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~ 117 (337)
|.+++||+||| +|.+|..+...+.
T Consensus 1 M~kkirvaIIG-aG~ig~~~~~~~l 24 (157)
T d1nvmb1 1 MNQKLKVAIIG-SGNIGTDLMIKVL 24 (157)
T ss_dssp CCSCEEEEEEC-CSHHHHHHHHHHH
T ss_pred CCCCcEEEEEc-CcHHHHHHHHHHH
Confidence 45668999999 6999987544343
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=93.22 E-value=0.14 Score=43.90 Aligned_cols=116 Identities=12% Similarity=0.024 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCc--c--cEE-EecCccccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--R--EVK-IGINPYELF 170 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~--~--~v~-i~t~~~eal 170 (337)
-+++.|+||++-||.++|..|+..|. .|.+. ++++++++..+.++.......+ . .+. ....-.+.+
T Consensus 5 gK~~lITGas~GIG~aia~~l~~~G~-----~V~~~----~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 75 (242)
T d1ulsa_ 5 DKAVLITGAAHGIGRATLELFAKEGA-----RLVAC----DIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHL 75 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhc
Confidence 35788999999999999999999886 25542 4556666544433321110000 0 000 000112445
Q ss_pred CCCcEEEEecccCCCCC---Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 171 EDAEWALLIGAKPRGPG---MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 171 ~dADvVIitag~prk~g---~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
..-|++|..+|...... .+.. ..+..| .-+.+...+.+.+. ..+.+++.+
T Consensus 76 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~~~i~~~s 135 (242)
T d1ulsa_ 76 GRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREK--NPGSIVLTA 135 (242)
T ss_dssp SSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CCEEEEEEC
T ss_pred CCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhcccccccc--ccceeeeec
Confidence 67899999888653211 2222 234444 33456666766663 455555555
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=93.16 E-value=0.4 Score=41.13 Aligned_cols=113 Identities=14% Similarity=0.072 Sum_probs=63.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC----------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN---------- 165 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~---------- 165 (337)
+++.|+||++.||.++|..|+..|. .|.+. +++.+.++..+.++.... . .++.. ..|
T Consensus 10 K~alITGas~GIG~aia~~la~~Ga-----~V~i~----~r~~~~~~~~~~~~~~~~-g--~~~~~~~~Dv~~~~~v~~~ 77 (260)
T d1h5qa_ 10 KTIIVTGGNRGIGLAFTRAVAAAGA-----NVAVI----YRSAADAVEVTEKVGKEF-G--VKTKAYQCDVSNTDIVTKT 77 (260)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTE-----EEEEE----ESSCTTHHHHHHHHHHHH-T--CCEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHHHh-C--CceEEEEccCCCHHHHHHH
Confidence 5678889999999999999999886 25553 334444444444443321 1 11111 111
Q ss_pred ---cccccCCCcEEEEecccCC-CCC--Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 166 ---PYELFEDAEWALLIGAKPR-GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 166 ---~~eal~dADvVIitag~pr-k~g--~~R~---dll~~N~----~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
-.+.+..-|++|..+|... ++- .+.. +.+..|+ .+.+...+.+.+. ...+.+++.+
T Consensus 78 ~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~~g~i~~~~ 146 (260)
T d1h5qa_ 78 IQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQK-QQKGSIVVTS 146 (260)
T ss_dssp HHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEEC
T ss_pred HHHHHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhccccccc-ccceEEEEee
Confidence 1234567999998887542 221 1222 2344553 3556667777654 4555665544
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=93.16 E-value=0.15 Score=43.89 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=49.2
Q ss_pred EE-EEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC----------
Q 019713 98 NI-AVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN---------- 165 (337)
Q Consensus 98 KI-~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~---------- 165 (337)
|| .|+||++-||.++|..|+..|. .|.+. ++++++++..+.++.+... ++. +..|
T Consensus 3 KValITGas~GIG~aia~~la~~Ga-----~V~i~----~r~~~~l~~~~~~l~~~g~----~~~~~~~Dvs~~~~v~~~ 69 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGL-----RVFVC----ARGEEGLRTTLKELREAGV----EADGRTCDVRSVPEIEAL 69 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHTTC----CEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHhcCC----cEEEEEeecCCHHHHHHH
Confidence 56 5779999999999999999886 25553 5567777777677764321 111 1111
Q ss_pred ---cccccCCCcEEEEecccCC
Q 019713 166 ---PYELFEDAEWALLIGAKPR 184 (337)
Q Consensus 166 ---~~eal~dADvVIitag~pr 184 (337)
-.+.+..-|++|..+|...
T Consensus 70 ~~~~~~~~g~iDilVnnAG~~~ 91 (257)
T d2rhca1 70 VAAVVERYGPVDVLVNNAGRPG 91 (257)
T ss_dssp HHHHHHHTCSCSEEEECCCCCC
T ss_pred HHHHHHHhCCCCEEEecccccC
Confidence 1234567899999888653
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=93.10 E-value=0.086 Score=42.53 Aligned_cols=74 Identities=16% Similarity=0.113 Sum_probs=43.7
Q ss_pred CCEEEEEc-CCCchHHHHHHHHHHcCCCCCCCceEEEeccccc---hhhHHHhHHHhHhhhccCCcccEEEecCcccccC
Q 019713 96 MVNIAVSG-AAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER---SLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (337)
Q Consensus 96 ~~KI~IIG-AaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~---~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~ 171 (337)
..||++|| +..+|-.+++..+..-|. .+. +...+. ..+..+ .+.++... ....+.++.+..++++
T Consensus 3 g~ki~~vGD~~nnV~~Sli~~~~~~g~-----~i~--~~~P~~~~~~~~~~~-~~~~~~~~---~~~~i~~~~d~~~ai~ 71 (161)
T d1vlva2 3 GVKVVFMGDTRNNVATSLMIACAKMGM-----NFV--ACGPEELKPRSDVFK-RCQEIVKE---TDGSVSFTSNLEEALA 71 (161)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHTTC-----EEE--EESCGGGCCCHHHHH-HHHHHHHH---HCCEEEEESCHHHHHT
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHcCC-----EEE--EecchhhhhhhhHHH-HHHHHHhh---cCCceEEEecHHHhhh
Confidence 46999999 334688888887777553 233 332211 111111 11112111 2246788888889999
Q ss_pred CCcEEEEec
Q 019713 172 DAEWALLIG 180 (337)
Q Consensus 172 dADvVIita 180 (337)
+||+|....
T Consensus 72 ~aDviyt~~ 80 (161)
T d1vlva2 72 GADVVYTDV 80 (161)
T ss_dssp TCSEEEECC
T ss_pred hhhheeccc
Confidence 999998754
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=93.04 E-value=0.02 Score=48.96 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|||.|+||+|+||++++..|...|.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~ 26 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNV 26 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC
Confidence 7999999999999999999987664
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.03 E-value=0.16 Score=41.03 Aligned_cols=75 Identities=13% Similarity=0.068 Sum_probs=44.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc---hhhHHHhHHHhHhhhccCCcccEEEecCcccccC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER---SLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~---~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~ 171 (337)
+-.||++||-..+|..+++..+..-|+ .+.+...+. .++.++ .+.+..... ...+.++.+..++++
T Consensus 3 ~gl~Ia~VGD~~nv~~Sli~~l~~~g~-------~v~~~~P~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~d~~ea~~ 71 (163)
T d1pvva2 3 KGVKVVYVGDGNNVAHSLMIAGTKLGA-------DVVVATPEGYEPDEKVIK-WAEQNAAES---GGSFELLHDPVKAVK 71 (163)
T ss_dssp TTCEEEEESCCCHHHHHHHHHHHHTTC-------EEEEECCTTCCCCHHHHH-HHHHHHHHH---TCEEEEESCHHHHTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCC-------eEEEecccccCCChHHHH-HHHHhhhcc---cceEEEecCHHHHhh
Confidence 346999999866788888877776543 233332211 122222 111111111 135677778889999
Q ss_pred CCcEEEEec
Q 019713 172 DAEWALLIG 180 (337)
Q Consensus 172 dADvVIita 180 (337)
+||+|..+-
T Consensus 72 ~adviy~~~ 80 (163)
T d1pvva2 72 DADVIYTDV 80 (163)
T ss_dssp TCSEEEECC
T ss_pred hccEEeecc
Confidence 999988753
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=93.02 E-value=0.028 Score=47.88 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+||.|+||+|++|++++..|...|.
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~ 28 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGH 28 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.00 E-value=0.65 Score=40.46 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.7
Q ss_pred CEEEEE-cCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVS-GAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~II-GAaG~VG~~la~~L~~~~l 121 (337)
+||++| ||++-||.++|..|+..|.
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga 27 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPS 27 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCC
Confidence 588765 9999999999999998775
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=92.98 E-value=0.12 Score=45.19 Aligned_cols=115 Identities=14% Similarity=0.125 Sum_probs=64.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-------cCcccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYEL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-------t~~~ea 169 (337)
++|.|+||++-||.++|..|+..|. .|.+ .+++.++++....++.+.......+++-. ....+.
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 76 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAEGA-----KVAV----LDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVAR 76 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHH
Confidence 5788999999999999999999886 2554 35566777655554433211110010000 011244
Q ss_pred cCCCcEEEEecccCCCC-------CCc----hhhhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 170 FEDAEWALLIGAKPRGP-------GME----RAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 170 l~dADvVIitag~prk~-------g~~----R~dll~~N----~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+...|++|..+|..... ... -...+..| ..+.+...+.+.+. .+.+|++.|
T Consensus 77 ~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~g~iI~i~S 142 (276)
T d1bdba_ 77 FGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVAS--RGNVIFTIS 142 (276)
T ss_dssp HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred hCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhc--CCCceeeee
Confidence 66889999888743211 111 11223334 34566677777664 455555554
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=92.93 E-value=0.058 Score=41.43 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=24.4
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 92 ~~~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++++.||+|||| |.+|-.+|..|...+.
T Consensus 18 ~l~~p~~v~IiGg-G~iG~E~A~~l~~~g~ 46 (117)
T d1onfa2 18 NIKESKKIGIVGS-GYIAVELINVIKRLGI 46 (117)
T ss_dssp TCCCCSEEEEECC-SHHHHHHHHHHHTTTC
T ss_pred ccCCCCEEEEECC-chHHHHHHHHHHhccc
Confidence 4566789999996 9999999999987664
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=92.90 E-value=0.48 Score=40.44 Aligned_cols=112 Identities=17% Similarity=0.207 Sum_probs=64.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC-----------
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN----------- 165 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~----------- 165 (337)
-|.|+||++.+|..+|..|+..|. .|.+.. .++++.++....+++... .++. +..|
T Consensus 3 V~lITGas~GIG~a~a~~la~~Ga-----~V~i~~---~~~~~~~~~~~~~~~~~g----~~~~~~~~Dv~~~~~v~~~~ 70 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLGKAGC-----KVLVNY---ARSAKAAEEVSKQIEAYG----GQAITFGGDVSKEADVEAMM 70 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-----EEEEEE---SSCHHHHHHHHHHHHHHT----CEEEEEECCTTSHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC-----EEEEEe---CCCHHHHHHHHHHHHHcC----CcEEEEeCCCCCHHHHHHHH
Confidence 356779999999999999999886 255432 234455555544454321 1111 1111
Q ss_pred --cccccCCCcEEEEecccCC-CCC--Cch---hhhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 166 --PYELFEDAEWALLIGAKPR-GPG--MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 166 --~~eal~dADvVIitag~pr-k~g--~~R---~dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
-.+.+..-|++|..+|... ++- .+. ...+..| .-..+...+.|.+. .++.||+++-
T Consensus 71 ~~~~~~~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~IVnisS 138 (244)
T d1edoa_ 71 KTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK--RKGRIINIAS 138 (244)
T ss_dssp HHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHcCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc--CCcEEEEEcC
Confidence 1233467899999887543 221 111 1234444 44567777777764 5667777774
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=92.74 E-value=0.069 Score=46.60 Aligned_cols=114 Identities=11% Similarity=0.058 Sum_probs=65.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC----------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN---------- 165 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~---------- 165 (337)
+.+.|+||++-||.++|..|+..|. .|.+. +.+ +++.++..+.++++.. .++.. ..|
T Consensus 8 K~alITGas~GIG~aia~~la~~G~-----~Vv~~--~r~-~~~~~~~~~~~~~~~g----~~~~~~~~Dvt~~~~v~~~ 75 (261)
T d1geea_ 8 KVVVITGSSTGLGKSMAIRFATEKA-----KVVVN--YRS-KEDEANSVLEEIKKVG----GEAIAVKGDVTVESDVINL 75 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE--ESS-CHHHHHHHHHHHHHTT----CEEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE--eCC-cHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHH
Confidence 4677889999999999999999886 25543 221 2345555555555322 11111 111
Q ss_pred ---cccccCCCcEEEEecccCC-CCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 166 ---PYELFEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 166 ---~~eal~dADvVIitag~pr-k~g--~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
-.+.+..-|++|..+|... .+- .+.. ..+..| .-+.+...+.+.+- ..+..|++++-
T Consensus 76 ~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~g~~Iv~isS 145 (261)
T d1geea_ 76 VQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVEN-DIKGTVINMSS 145 (261)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCCEEEEECC
T ss_pred HHHHHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccc-ccccccccccc
Confidence 1133457899999887643 221 1222 234445 34566777878774 45556666663
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=92.74 E-value=0.11 Score=42.18 Aligned_cols=66 Identities=15% Similarity=0.131 Sum_probs=42.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+..||.|+|| |.+|.++++.|...+.- .|.+ .+++.++.+..+-.+.. ..+ + .....++|
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~----~I~I----~nR~~~ka~~L~~~~~~--------~~~--~-~~~~~~~D 75 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFE----KLKI----YARNVKTGQYLAALYGY--------AYI--N-SLENQQAD 75 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCC----CEEE----ECSCHHHHHHHHHHHTC--------EEE--S-CCTTCCCS
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCC----EEEE----ecccHHHHHHHHHhhhh--------hhh--h-cccccchh
Confidence 4578999995 99999999999987752 2554 36677776654432211 111 1 12346799
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+||.+-
T Consensus 76 liINaT 81 (167)
T d1npya1 76 ILVNVT 81 (167)
T ss_dssp EEEECS
T ss_pred hheecc
Confidence 998863
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=92.67 E-value=0.13 Score=41.24 Aligned_cols=68 Identities=22% Similarity=0.197 Sum_probs=37.2
Q ss_pred CCEEEEEcCCCchHHH-HHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCccccc-CCC
Q 019713 96 MVNIAVSGAAGMIANH-LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-EDA 173 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~-la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal-~dA 173 (337)
.+||+|||+ |.+|.. .+..+...+- +.+.++ |.+.++++..+-++.. + ...++..+.+ .+.
T Consensus 1 tirvgiiG~-G~~~~~~~~~~l~~~~~------~~~~~~--d~~~~~~~~~~~~~~~---~-----~~~~~~~~ll~~~i 63 (167)
T d1xeaa1 1 SLKIAMIGL-GDIAQKAYLPVLAQWPD------IELVLC--TRNPKVLGTLATRYRV---S-----ATCTDYRDVLQYGV 63 (167)
T ss_dssp CEEEEEECC-CHHHHHTHHHHHTTSTT------EEEEEE--CSCHHHHHHHHHHTTC---C-----CCCSSTTGGGGGCC
T ss_pred CeEEEEEcC-CHHHHHHHHHHHHhCCC------cEEEEE--ECCHHHHHHHHHhccc---c-----cccccHHHhccccc
Confidence 379999995 999976 4555544332 344444 4455666554432221 1 1123323333 367
Q ss_pred cEEEEec
Q 019713 174 EWALLIG 180 (337)
Q Consensus 174 DvVIita 180 (337)
|+|+++.
T Consensus 64 D~V~I~t 70 (167)
T d1xeaa1 64 DAVMIHA 70 (167)
T ss_dssp SEEEECS
T ss_pred ceecccc
Confidence 9988864
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=92.56 E-value=0.056 Score=44.85 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=25.4
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 92 ~~~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+|+...||+|||| |.+|.+.|+.|+..+.
T Consensus 2 ~~~~~~kVvVIGa-GiaGl~~A~~L~~~G~ 30 (268)
T d1c0pa1 2 MMHSQKRVVVLGS-GVIGLSSALILARKGY 30 (268)
T ss_dssp CCCCSCEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCCCCCcEEEECc-cHHHHHHHHHHHHCCC
Confidence 4566679999995 9999999999999875
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.47 E-value=0.036 Score=47.80 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=63.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|.|+||++.||..++..|+..|. .|.+...+.+ ..+.+.+...|+.+... . .+ ....-.+.+..-|++
T Consensus 8 K~~lITGas~GIG~aia~~la~~Ga-----~V~~~~r~~~-~~~~~~~~~~Dv~~~~~-v-~~--~~~~~~~~~g~iDiL 77 (237)
T d1uzma1 8 RSVLVTGGNRGIGLAIAQRLAADGH-----KVAVTHRGSG-APKGLFGVEVDVTDSDA-V-DR--AFTAVEEHQGPVEVL 77 (237)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEEEESSSC-CCTTSEEEECCTTCHHH-H-HH--HHHHHHHHHSSCSEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEEECCcc-hhcCceEEEEecCCHHH-H-HH--HHHHHHHhcCCceEE
Confidence 5788999999999999999999886 2554322211 11122222233332210 0 00 001123556788999
Q ss_pred EEecccCC-CC--CCchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 177 LLIGAKPR-GP--GMERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 177 Iitag~pr-k~--g~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|..+|... ++ ..+.. ..+..| ..+.+...+.+.+. ..+.||+++-
T Consensus 78 VnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~g~Iv~isS 132 (237)
T d1uzma1 78 VSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN--KFGRMIFIGS 132 (237)
T ss_dssp EEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred EeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc--CCCceEEEcc
Confidence 98887543 22 11222 234444 33456677778774 5667777764
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=92.40 E-value=0.15 Score=46.64 Aligned_cols=73 Identities=10% Similarity=0.074 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH-HcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~-~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
....++||| +|..+..-+..+. ..++ . .|.+ + +++.++.+..+.++.+. ...++....+..+++++|
T Consensus 127 da~~l~iiG-~G~QA~~~~~a~~~v~~i-~---~V~v--~--~r~~~~~~~~~~~l~~~---~g~~v~~~~s~~eav~~A 194 (340)
T d1x7da_ 127 NARKMALIG-NGAQSEFQALAFHKHLGI-E---EIVA--Y--DTDPLATAKLIANLKEY---SGLTIRRASSVAEAVKGV 194 (340)
T ss_dssp TCCEEEEEC-CSTTHHHHHHHHHHHSCC-C---EEEE--E--CSSHHHHHHHHHHHTTC---TTCEEEECSSHHHHHTTC
T ss_pred CCceEEEEc-ccHHHHHHHHHHhhhcce-e---eeEE--E--ecChHHHHHHHHhhhhc---cCCCceecCCHHHHHhcC
Confidence 357999999 5988886665543 3332 2 2443 3 45666666666666532 223667777778999999
Q ss_pred cEEEEe
Q 019713 174 EWALLI 179 (337)
Q Consensus 174 DvVIit 179 (337)
|+|+.+
T Consensus 195 DIi~t~ 200 (340)
T d1x7da_ 195 DIITTV 200 (340)
T ss_dssp SEEEEC
T ss_pred Cceeec
Confidence 999863
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=92.34 E-value=0.06 Score=39.47 Aligned_cols=71 Identities=15% Similarity=0.103 Sum_probs=43.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
+||+|+|+ |..|.++|..|...+. .+.+ .|...+.+.. .++.+ ...+.....+...+.+.|+|
T Consensus 6 K~v~ViGl-G~sG~s~a~~L~~~g~-----~v~~--~D~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~~~d~v 68 (93)
T d2jfga1 6 KNVVIIGL-GLTGLSCVDFFLARGV-----TPRV--MDTRMTPPGL----DKLPE-----AVERHTGSLNDEWLMAADLI 68 (93)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTC-----CCEE--EESSSSCTTG----GGSCT-----TSCEEESBCCHHHHHHCSEE
T ss_pred CEEEEEeE-CHHHHHHHHHHHHCCC-----EEEE--eeCCcCchhH----HHHhh-----ccceeecccchhhhccCCEE
Confidence 58999995 9999999999998875 2443 2322111111 11111 12334433445678899999
Q ss_pred EEecccCC
Q 019713 177 LLIGAKPR 184 (337)
Q Consensus 177 Iitag~pr 184 (337)
|++-|.|.
T Consensus 69 i~SPGi~~ 76 (93)
T d2jfga1 69 VASPGIAL 76 (93)
T ss_dssp EECTTSCT
T ss_pred EECCCCCC
Confidence 99866653
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=92.16 E-value=0.16 Score=42.34 Aligned_cols=94 Identities=13% Similarity=0.168 Sum_probs=51.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
-.+|+||| .|.||+.++..+..-+. .+. .+|.... ..... ... ......+..+.++.||+
T Consensus 47 g~tvgIiG-~G~IG~~va~~l~~fg~-----~v~--~~d~~~~--~~~~~---~~~-------~~~~~~~l~~ll~~sD~ 106 (191)
T d1gdha1 47 NKTLGIYG-FGSIGQALAKRAQGFDM-----DID--YFDTHRA--SSSDE---ASY-------QATFHDSLDSLLSVSQF 106 (191)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC-----EEE--EECSSCC--CHHHH---HHH-------TCEECSSHHHHHHHCSE
T ss_pred ccceEEee-cccchHHHHHHHHhhcc-----ccc--ccccccc--ccchh---hcc-------cccccCCHHHHHhhCCe
Confidence 36999999 59999999988765443 233 2333221 11111 110 11122344578999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|++... ..+ +...++ |. +.++.. ++++++|+++=
T Consensus 107 v~l~~p--lt~--~T~~li--~~-------~~l~~m-k~~a~lIN~sR 140 (191)
T d1gdha1 107 FSLNAP--STP--ETRYFF--NK-------ATIKSL-PQGAIVVNTAR 140 (191)
T ss_dssp EEECCC--CCT--TTTTCB--SH-------HHHTTS-CTTEEEEECSC
T ss_pred EEecCC--CCc--hHhhee--cH-------HHhhCc-CCccEEEecCC
Confidence 998652 111 111122 11 123343 68999999984
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.16 E-value=0.19 Score=40.87 Aligned_cols=71 Identities=17% Similarity=0.113 Sum_probs=40.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCccccc--CCCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF--EDAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal--~dAD 174 (337)
+||+|||+ |.+|...+..|...+- +.+.-+ .|++.++++..+... .......++++..+.+ .+.|
T Consensus 2 iki~iIG~-G~~g~~~~~~l~~~~~------~~i~ai-~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ll~~~~iD 68 (184)
T d1ydwa1 2 IRIGVMGC-ADIARKVSRAIHLAPN------ATISGV-ASRSLEKAKAFATAN-----NYPESTKIHGSYESLLEDPEID 68 (184)
T ss_dssp EEEEEESC-CTTHHHHHHHHHHCTT------EEEEEE-ECSSHHHHHHHHHHT-----TCCTTCEEESSHHHHHHCTTCC
T ss_pred eEEEEEcC-CHHHHHHHHHHHhCCC------CEEEEE-EeCCccccccchhcc-----ccccceeecCcHHHhhhccccc
Confidence 69999995 9999998888866432 222211 245555655433211 1222344554433333 5688
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+|+++.
T Consensus 69 ~v~I~t 74 (184)
T d1ydwa1 69 ALYVPL 74 (184)
T ss_dssp EEEECC
T ss_pred eeeecc
Confidence 988864
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.11 E-value=0.9 Score=39.86 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=68.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccC-CcccEEE-ecC--c------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-LLREVKI-GIN--P------ 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~-~~~~v~i-~t~--~------ 166 (337)
+.+.|+||++-||.++|..|+..|. .|.+ .+++.++++..+.+|...... ...++.. ..| +
T Consensus 13 KvalITGas~GIG~aia~~la~~Ga-----~Vvi----~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~ 83 (297)
T d1yxma1 13 QVAIVTGGATGIGKAIVKELLELGS-----NVVI----ASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNN 83 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHH
Confidence 5788999999999999999999886 2555 356677777777777642211 1112221 111 1
Q ss_pred -----ccccCCCcEEEEecccCC-CCC--Cch---hhhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 -----YELFEDAEWALLIGAKPR-GPG--MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 -----~eal~dADvVIitag~pr-k~g--~~R---~dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+..-|++|..+|... .+- .+. ...+..| .-+.+...+.+.+. ..+.||+++.
T Consensus 84 ~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~g~Ii~~ss 153 (297)
T d1yxma1 84 LVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKE--HGGSIVNIIV 153 (297)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHH--HCEEEEEECC
T ss_pred HHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccc--cccccccccc
Confidence 123557899999887543 221 111 2234555 33456666776664 3455566653
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.94 E-value=0.14 Score=46.01 Aligned_cols=71 Identities=15% Similarity=0.065 Sum_probs=46.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
...+++||| +|..+..-+..+..-.-+. .|.+ + +++.++.+..+.++.+.. ..+ ..+..+++.+||
T Consensus 124 ~~~~l~iiG-aG~QA~~~~~al~~~~~i~---~i~v--~--~r~~e~~~~~~~~~~~~~----~~~--~~~~~~a~~~aD 189 (320)
T d1omoa_ 124 NSSVFGFIG-CGTQAYFQLEALRRVFDIG---EVKA--Y--DVREKAAKKFVSYCEDRG----ISA--SVQPAEEASRCD 189 (320)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHHSCCC---EEEE--E--CSSHHHHHHHHHHHHHTT----CCE--EECCHHHHTSSS
T ss_pred CccEEEEec-CcccHHHHHHHHHHHhhhh---hccc--c--cCCHHHHHHHHHHHHhcC----Ccc--ccchhhhhcccc
Confidence 357899999 5999888776665432232 2544 3 567778777777666532 122 234678899999
Q ss_pred EEEEe
Q 019713 175 WALLI 179 (337)
Q Consensus 175 vVIit 179 (337)
+|+.+
T Consensus 190 iV~ta 194 (320)
T d1omoa_ 190 VLVTT 194 (320)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 98865
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.91 E-value=0.56 Score=37.36 Aligned_cols=97 Identities=16% Similarity=0.043 Sum_probs=55.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCcc-ccc-
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPY-ELF- 170 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~~-eal- 170 (337)
++.-+|.|+|+ |.+|...+..+...+.- .|.+ .|.++++++ .+.++. . . .+... .++. +..
T Consensus 25 ~~gd~VlI~G~-G~iG~~~~~~a~~~G~~----~Vi~----~d~~~~rl~-~a~~~G--a---~-~~~~~~~~~~~~~~~ 88 (171)
T d1pl8a2 25 TLGHKVLVCGA-GPIGMVTLLVAKAMGAA----QVVV----TDLSATRLS-KAKEIG--A---D-LVLQISKESPQEIAR 88 (171)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCS----EEEE----EESCHHHHH-HHHHTT--C---S-EEEECSSCCHHHHHH
T ss_pred CCCCEEEEECC-CccHHHHHHHHHHcCCc----eEEe----ccCCHHHHH-HHHHhC--C---c-ccccccccccccccc
Confidence 44468999995 99999998888776642 2433 356666665 333331 1 0 11111 1111 111
Q ss_pred -------CCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 171 -------EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 171 -------~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
.++|+||.+.|.+ ..+....+ ...+++.+++++.|.
T Consensus 89 ~~~~~~g~g~Dvvid~~G~~---------------~~~~~a~~----~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 89 KVEGQLGCKPEVTIECTGAE---------------ASIQAGIY----ATRSGGTLVLVGLGS 131 (171)
T ss_dssp HHHHHHTSCCSEEEECSCCH---------------HHHHHHHH----HSCTTCEEEECSCCC
T ss_pred cccccCCCCceEEEeccCCc---------------hhHHHHHH----HhcCCCEEEEEecCC
Confidence 3789999887542 22222222 235788888888764
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=91.81 E-value=0.021 Score=48.92 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=23.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
-||.|+||+|-+|.+++..|+..|.
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~ 27 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGY 27 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC
Confidence 4899999999999999999999885
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=91.76 E-value=0.75 Score=36.30 Aligned_cols=96 Identities=16% Similarity=0.067 Sum_probs=54.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecC---ccc--
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN---PYE-- 168 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~---~~e-- 168 (337)
++.-+|.|+| +|.||...+..+...+. .+.. +|.++++++ .+.++... ....... +..
T Consensus 25 ~~g~~vlV~G-~G~vG~~~~~~ak~~Ga-----~vi~----v~~~~~r~~-~a~~~ga~------~~~~~~~~~~~~~~~ 87 (170)
T d1e3ja2 25 QLGTTVLVIG-AGPIGLVSVLAAKAYGA-----FVVC----TARSPRRLE-VAKNCGAD------VTLVVDPAKEEESSI 87 (170)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHH-HHHHTTCS------EEEECCTTTSCHHHH
T ss_pred CCCCEEEEEc-ccccchhhHhhHhhhcc-----cccc----cchHHHHHH-HHHHcCCc------EEEeccccccccchh
Confidence 3446899999 59999999888877664 1433 355666654 33333210 1111111 111
Q ss_pred --c-----cCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 169 --L-----FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 169 --a-----l~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
. =.++|+||.+.|.+ ..+.. .++- ..|++.+++++.|.
T Consensus 88 ~~~~~~~~g~g~D~vid~~g~~---------------~~~~~---a~~~-~~~~G~iv~~G~~~ 132 (170)
T d1e3ja2 88 IERIRSAIGDLPNVTIDCSGNE---------------KCITI---GINI-TRTGGTLMLVGMGS 132 (170)
T ss_dssp HHHHHHHSSSCCSEEEECSCCH---------------HHHHH---HHHH-SCTTCEEEECSCCS
T ss_pred hhhhhcccccCCceeeecCCCh---------------HHHHH---HHHH-HhcCCceEEEecCC
Confidence 1 14689999887542 11222 2223 36888999998764
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=91.62 E-value=0.82 Score=35.65 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=20.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
-+|.|+|. |.+|..++..|...+.
T Consensus 4 nHiII~G~-g~~g~~l~~~L~~~~~ 27 (153)
T d1id1a_ 4 DHFIVCGH-SILAINTILQLNQRGQ 27 (153)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCC
Confidence 47999995 9999999999988764
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=91.49 E-value=0.07 Score=47.41 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=23.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVL 122 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~ 122 (337)
|..++||+|||| |..|-.+|..|...+..
T Consensus 1 m~~~KrVaIIGa-G~sGl~~A~~L~~~~~~ 29 (335)
T d2gv8a1 1 LPTIRKIAIIGA-GPSGLVTAKALLAEKAF 29 (335)
T ss_dssp CCSCCEEEEECC-SHHHHHHHHHHHTTTCC
T ss_pred CCCCCeEEEECc-CHHHHHHHHHHHHhCCC
Confidence 356789999995 99999999988776653
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.41 E-value=1.1 Score=38.45 Aligned_cols=116 Identities=12% Similarity=0.074 Sum_probs=61.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC---------
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--------- 165 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--------- 165 (337)
-+++.|+||++-||.+++..|+..|. .|.+. +.+ +.+.++..+.++.+.. . ++.. ..|
T Consensus 18 gK~~lITGas~GIG~aia~~la~~Ga-----~Vvi~--~~~-~~~~~~~~~~~~~~~g-~---~~~~~~~D~~~~~~v~~ 85 (272)
T d1g0oa_ 18 GKVALVTGAGRGIGREMAMELGRRGC-----KVIVN--YAN-STESAEEVVAAIKKNG-S---DAACVKANVGVVEDIVR 85 (272)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE--ESS-CHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-----EEEEE--eCC-chHHHHHHHHHHHhhC-C---ceeeEeCCCCCHHHHHH
Confidence 36889999999999999999999886 25543 222 2345554444444322 1 1111 111
Q ss_pred ----cccccCCCcEEEEecccCCCCC---Cc---hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 166 ----PYELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 166 ----~~eal~dADvVIitag~prk~g---~~---R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
-.+.+..-|++|..+|...... .+ -.+.+..|+.-.-.+.+.+..+-..++.+++++.
T Consensus 86 ~~~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s 153 (272)
T d1g0oa_ 86 MFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS 153 (272)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred HHHHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccc
Confidence 1244567899998877543221 11 1233444543333333333333334455556653
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=91.39 E-value=0.06 Score=47.96 Aligned_cols=27 Identities=33% Similarity=0.245 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+.++|.|+||+|++|++++..|...+.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~ 28 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGH 28 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCC
Confidence 346899999999999999999998775
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.35 E-value=0.19 Score=47.08 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||.|||| |.+|+.++..|+..|+
T Consensus 37 ~~kVlvvG~-GglG~ei~k~L~~~Gv 61 (426)
T d1yovb1 37 TCKVLVIGA-GGLGCELLKNLALSGF 61 (426)
T ss_dssp HCCEEEECS-STTHHHHHHHHHTTTC
T ss_pred cCeEEEECC-CHHHHHHHHHHHHcCC
Confidence 369999995 9999999999999997
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.31 E-value=0.36 Score=41.63 Aligned_cols=116 Identities=10% Similarity=0.000 Sum_probs=65.4
Q ss_pred CEEE-EEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--cC-------
Q 019713 97 VNIA-VSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--IN------- 165 (337)
Q Consensus 97 ~KI~-IIGAaG~VG~~la~~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t~------- 165 (337)
++|+ |+||++-||..+|..|+.. +. .|.+. ++++++++..+.+|...... ..+... ++
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~-----~Vi~~----~r~~~~~~~~~~~l~~~~~~--~~~~~~Dvs~~~sv~~~ 71 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSG-----DVVLT----ARDVTRGQAAVQQLQAEGLS--PRFHQLDIDDLQSIRAL 71 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSS-----EEEEE----ESSHHHHHHHHHHHHHTTCC--CEEEECCTTCHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCC-----EEEEE----ECCHHHHHHHHHHHHhcCCc--EEEEEEecCCHHHHHHH
Confidence 4675 6699999999999999864 53 25553 56677777766666643211 011110 00
Q ss_pred ---cccccCCCcEEEEecccCC-CCCC--chh---hhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 166 ---PYELFEDAEWALLIGAKPR-GPGM--ERA---GLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 166 ---~~eal~dADvVIitag~pr-k~g~--~R~---dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
-.+.+..-|++|..||... .+.. +.. ..+..|.--...+.+.+-.+-.+.+.||+++.
T Consensus 72 ~~~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS 138 (275)
T d1wmaa1 72 RDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS 138 (275)
T ss_dssp HHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred HHHHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 1233567899999888532 2221 222 23455544333444444443344578888875
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.22 E-value=0.96 Score=38.42 Aligned_cols=50 Identities=26% Similarity=0.206 Sum_probs=33.8
Q ss_pred CEEEEE-cCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhh
Q 019713 97 VNIAVS-GAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS 152 (337)
Q Consensus 97 ~KI~II-GAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~ 152 (337)
-||+|| ||++-||.++|..|+...--|- .|.+ .++++++++..+.+|...
T Consensus 6 gKvalITGas~GIG~aiA~~lA~~~~~G~--~Vv~----~~r~~~~l~~~~~~l~~~ 56 (259)
T d1oaaa_ 6 CAVCVLTGASRGFGRALAPQLARLLSPGS--VMLV----SARSESMLRQLKEELGAQ 56 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEE----EESCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhcccCCC--EEEE----EECCHHHHHHHHHHHHhh
Confidence 377766 9999999999999985221111 2444 356777888777777643
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.19 E-value=0.048 Score=45.20 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|||+|||| |-+|.+.|+.|+..+.
T Consensus 1 mkV~VIGa-Gi~GlstA~~L~~~G~ 24 (246)
T d1kifa1 1 MRVVVIGA-GVIGLSTALCIHERYH 24 (246)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHHT
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCC
Confidence 69999995 9999999999998764
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=91.14 E-value=0.23 Score=39.60 Aligned_cols=66 Identities=18% Similarity=0.103 Sum_probs=36.5
Q ss_pred CEEEEEcCCCchHHH-HHHHHHHcCCCCCCCceEE-EeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 97 VNIAVSGAAGMIANH-LLFKLAAGEVLGPDQPIAL-KLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~-la~~L~~~~l~~e~~~v~L-~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+||+||| +|.+|.. .+..+...+- +.+ .+. |++.++++..+-+. . +...++..+.+.+.|
T Consensus 2 iri~iIG-~G~~g~~~~~~~l~~~~~------~~i~~v~--d~~~~~~~~~~~~~---~------~~~~~~~~~l~~~~D 63 (164)
T d1tlta1 2 LRIGVVG-LGGIAQKAWLPVLAAASD------WTLQGAW--SPTRAKALPICESW---R------IPYADSLSSLAASCD 63 (164)
T ss_dssp EEEEEEC-CSTHHHHTHHHHHHSCSS------EEEEEEE--CSSCTTHHHHHHHH---T------CCBCSSHHHHHTTCS
T ss_pred CEEEEEc-CCHHHHHHHHHHHHhCCC------cEEEEEE--echhHhhhhhhhcc---c------ccccccchhhhhhcc
Confidence 6999999 5999975 5566654322 222 233 44555554333222 1 112233334468999
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+|+++.
T Consensus 64 ~V~I~t 69 (164)
T d1tlta1 64 AVFVHS 69 (164)
T ss_dssp EEEECS
T ss_pred cccccc
Confidence 988764
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=91.05 E-value=0.22 Score=41.55 Aligned_cols=26 Identities=12% Similarity=0.064 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++-||.|||| |.+|..-+.....-|-
T Consensus 28 ~pa~VvViGa-GvaG~~Aa~~A~~lGA 53 (183)
T d1l7da1 28 PPARVLVFGV-GVAGLQAIATAKRLGA 53 (183)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCcEEEEEcC-cHHHHHHHHHHHHcCC
Confidence 5679999995 9999998777665553
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=91.04 E-value=0.35 Score=41.34 Aligned_cols=109 Identities=13% Similarity=0.041 Sum_probs=61.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ec---C-------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI---N------- 165 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t---~------- 165 (337)
+.+.|+||++-||.++|..|+..|. .|.+. |.+.. +.++.. +++.. .++.. .. +
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga-----~V~~~--~~~~~-~~~~~~---~~~~g----~~~~~~~~Dvs~~~~v~~~ 70 (247)
T d2ew8a1 6 KLAVITGGANGIGRAIAERFAVEGA-----DIAIA--DLVPA-PEAEAA---IRNLG----RRVLTVKCDVSQPGDVEAF 70 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE--ESSCC-HHHHHH---HHHTT----CCEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE--ECCch-HHHHHH---HHHcC----CcEEEEEeeCCCHHHHHHH
Confidence 4677889999999999999999886 25543 33221 222222 22211 11111 11 1
Q ss_pred ---cccccCCCcEEEEecccCC-CCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 166 ---PYELFEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 166 ---~~eal~dADvVIitag~pr-k~g--~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
-.+.+..-|++|..+|... ++- .+.. ..+..| .-+.+.+.+.+.+. ..+.||+++
T Consensus 71 ~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~Iv~is 138 (247)
T d2ew8a1 71 GKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRN--GWGRIINLT 138 (247)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEC
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhc--CCCCccccc
Confidence 1233567999999887532 221 1222 234444 44566777778775 456777776
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=90.97 E-value=0.29 Score=41.25 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=39.9
Q ss_pred cCCCEEEEEcCCCchHH-HHHHHHHHcCCCCCCCceEEE-eccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC
Q 019713 94 KKMVNIAVSGAAGMIAN-HLLFKLAAGEVLGPDQPIALK-LLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~-~la~~L~~~~l~~e~~~v~L~-L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~ 171 (337)
.++.||+|||+ |.+|. +++..+...+ .+.|. ++ |++.++++..+-+.. . + ...+...++-.+.++
T Consensus 31 ~~~iriaiIG~-G~~~~~~~~~~~~~~~------~~~ivav~--d~~~~~a~~~~~~~~-i--~-~~~~~~~~d~~ell~ 97 (221)
T d1h6da1 31 DRRFGYAIVGL-GKYALNQILPGFAGCQ------HSRIEALV--SGNAEKAKIVAAEYG-V--D-PRKIYDYSNFDKIAK 97 (221)
T ss_dssp CCCEEEEEECC-SHHHHHTHHHHTTTCS------SEEEEEEE--CSCHHHHHHHHHHTT-C--C-GGGEECSSSGGGGGG
T ss_pred CCCEEEEEEcC-cHHHHHHHHHHHHhCC------CceEEEEe--cCCHHHHHHHHHhhc-c--c-cccccccCchhhhcc
Confidence 56789999995 99996 4555543322 13222 33 556666654433221 1 1 123444444334454
Q ss_pred --CCcEEEEec
Q 019713 172 --DAEWALLIG 180 (337)
Q Consensus 172 --dADvVIita 180 (337)
+.|+|+++.
T Consensus 98 ~~~iD~V~I~t 108 (221)
T d1h6da1 98 DPKIDAVYIIL 108 (221)
T ss_dssp CTTCCEEEECS
T ss_pred cccceeeeecc
Confidence 578888864
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=90.93 E-value=0.22 Score=41.80 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=26.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE 136 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d 136 (337)
+||.||| .|..|..++..+...++.+ +.+..++.|
T Consensus 1 ~kI~viG-vGGaG~n~v~~l~~~~~~~----v~~iainTD 35 (194)
T d1w5fa1 1 LKIKVIG-VGGAGNNAINRMIEIGIHG----VEFVAVNTD 35 (194)
T ss_dssp CCEEEEE-EHHHHHHHHHHHHHHCCTT----EEEEEEESC
T ss_pred CeEEEEE-eCchHHHHHHHHHHcCCCc----eEEEEEcCC
Confidence 5899999 6999999999998887743 555444443
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=90.88 E-value=0.091 Score=45.03 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=27.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER 137 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~ 137 (337)
.||.|+|+ |.+|+.++..|+..|+ + .|.|+|.|.
T Consensus 31 ~~VliiG~-GglGs~va~~La~~Gv-g-----~i~lvD~D~ 64 (247)
T d1jw9b_ 31 SRVLIVGL-GGLGCAASQYLASAGV-G-----NLTLLDFDT 64 (247)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-S-----EEEEECCCB
T ss_pred CCEEEECC-CHHHHHHHHHHHHcCC-C-----eEEEECCcc
Confidence 59999995 9999999999999997 2 345556553
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.88 E-value=0.17 Score=41.89 Aligned_cols=93 Identities=17% Similarity=0.260 Sum_probs=51.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.++|+|+| .|.+|..++..+..-+. .|.. + |+........ +. .+.. .+..+.++.||+
T Consensus 44 ~k~vgiiG-~G~IG~~va~~~~~fg~-----~v~~--~--d~~~~~~~~~-----~~------~~~~-~~l~ell~~sDi 101 (184)
T d1ygya1 44 GKTVGVVG-LGRIGQLVAQRIAAFGA-----YVVA--Y--DPYVSPARAA-----QL------GIEL-LSLDDLLARADF 101 (184)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC-----EEEE--E--CTTSCHHHHH-----HH------TCEE-CCHHHHHHHCSE
T ss_pred ceeeeecc-ccchhHHHHHHhhhccc-----eEEe--e--cCCCChhHHh-----hc------Ccee-ccHHHHHhhCCE
Confidence 46899999 59999999988764332 2332 3 3322221111 11 1122 245678999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
|++... ..+ +...++ |. +.++.. ++++++|+++=-
T Consensus 102 v~~~~P--lt~--~T~~li--n~-------~~l~~m-k~~a~lIN~sRG 136 (184)
T d1ygya1 102 ISVHLP--KTP--ETAGLI--DK-------EALAKT-KPGVIIVNAARG 136 (184)
T ss_dssp EEECCC--CST--TTTTCB--CH-------HHHTTS-CTTEEEEECSCT
T ss_pred EEEcCC--CCc--hhhhhh--hH-------HHHhhh-CCCceEEEecch
Confidence 998752 111 111122 21 223343 689999999843
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=90.87 E-value=0.26 Score=42.34 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=63.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-------ecCcccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-------GINPYEL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-------~t~~~ea 169 (337)
+.+.|+||++-||.++|..|+..|. .|.+. +++++.++ .+.++.....+. +++- ...-.+.
T Consensus 6 K~alITGas~GIG~aia~~la~~G~-----~V~~~----~~~~~~~~-~~~~~~~~~~~~--Dv~~~~~v~~~~~~~~~~ 73 (248)
T d2d1ya1 6 KGVLVTGGARGIGRAIAQAFAREGA-----LVALC----DLRPEGKE-VAEAIGGAFFQV--DLEDERERVRFVEEAAYA 73 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESSTTHHH-HHHHHTCEEEEC--CTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHH-HHHHcCCeEEEE--eCCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999886 25553 33333322 222221111010 1100 0012345
Q ss_pred cCCCcEEEEecccCC-CCC--Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 FEDAEWALLIGAKPR-GPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 l~dADvVIitag~pr-k~g--~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+..-|++|..+|... ++- .+-. ..+..| ..+.+...+.|.+. ..+.||+++-
T Consensus 74 ~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~~G~Ii~isS 135 (248)
T d2d1ya1 74 LGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV--GGGAIVNVAS 135 (248)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--TCEEEEEECC
T ss_pred cCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccc--cccccccccc
Confidence 678999999887542 221 1211 234444 34566777777763 4677777774
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=90.74 E-value=0.099 Score=43.84 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
...||+|||| |..|.++|..|+..|+
T Consensus 3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~ 28 (265)
T d2voua1 3 TTDRIAVVGG-SISGLTAALMLRDAGV 28 (265)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCCcEEEECc-CHHHHHHHHHHHHCCC
Confidence 3579999995 9999999999999886
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=90.70 E-value=0.36 Score=39.74 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=23.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++.||+|||| |..|-+.|..|+..+.
T Consensus 41 ~~~k~V~IIGa-GPAGL~AA~~la~~G~ 67 (179)
T d1ps9a3 41 VQKKNLAVVGA-GPAGLAFAINAAARGH 67 (179)
T ss_dssp SSCCEEEEECC-SHHHHHHHHHHHTTTC
T ss_pred CCCcEEEEECc-cHHHHHHHHHHHhhcc
Confidence 34579999995 9999999999999886
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=90.63 E-value=0.15 Score=41.34 Aligned_cols=64 Identities=14% Similarity=0.029 Sum_probs=37.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
++||+||| .|.+|...+..|....- +.|.-+ .+++.+... ...+....+..+...+.|+
T Consensus 3 kirvgiiG-~G~ig~~~~~~l~~~~~------~elvav-~~~~~~~~~-------------~~~~~~~~~~~~~~~~~D~ 61 (170)
T d1f06a1 3 NIRVAIVG-YGNLGRSVEKLIAKQPD------MDLVGI-FSRRATLDT-------------KTPVFDVADVDKHADDVDV 61 (170)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHTTCSS------EEEEEE-EESSSCCSS-------------SSCEEEGGGGGGTTTTCSE
T ss_pred cceEEEEC-ChHHHHHHHHHHHhCCC------cEEEEE-Eeccccccc-------------ccccccchhhhhhccccce
Confidence 47999999 59999998888765332 333211 233322111 0123333444566789999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
|+++.
T Consensus 62 Vvi~t 66 (170)
T d1f06a1 62 LFLCM 66 (170)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99875
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.57 E-value=0.085 Score=44.30 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|+||+|||| |..|.++|..|...|+
T Consensus 1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi 25 (288)
T d3c96a1 1 PIDILIAGA-GIGGLSCALALHQAGI 25 (288)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC
Confidence 579999996 9999999999999885
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=90.29 E-value=0.084 Score=44.91 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++||+|||| |..|.+.|..|+..|+
T Consensus 28 ~~pkkV~IIGa-G~aGLsaA~~L~~~G~ 54 (370)
T d2iida1 28 SNPKHVVIVGA-GMAGLSAAYVLAGAGH 54 (370)
T ss_dssp SSCCEEEEECC-BHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHHCCC
Confidence 34679999995 9999999999999885
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=90.16 E-value=0.26 Score=41.29 Aligned_cols=90 Identities=11% Similarity=0.118 Sum_probs=50.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
.+|+||| .|.||..+|..|..-|. .|.. +|...+.+. . .+.. . ..+..+.+++||+|
T Consensus 44 k~vgIiG-~G~IG~~va~~l~~fg~-----~V~~--~d~~~~~~~---~----~~~~-------~-~~~l~~~l~~sDii 100 (197)
T d1j4aa1 44 QVVGVVG-TGHIGQVFMQIMEGFGA-----KVIT--YDIFRNPEL---E----KKGY-------Y-VDSLDDLYKQADVI 100 (197)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--ECSSCCHHH---H----HTTC-------B-CSCHHHHHHHCSEE
T ss_pred CeEEEec-ccccchhHHHhHhhhcc-----cccc--cCccccccc---c----ccee-------e-eccccccccccccc
Confidence 5899999 59999999999876443 2322 332221111 0 1111 0 12345789999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
++... .. .+...++. .+. ++.. ++++++|+++=
T Consensus 101 ~~~~p--lt--~~T~~li~--~~~-------l~~m-k~~a~lIN~sR 133 (197)
T d1j4aa1 101 SLHVP--DV--PANVHMIN--DES-------IAKM-KQDVVIVNVSR 133 (197)
T ss_dssp EECSC--CC--GGGTTCBS--HHH-------HHHS-CTTEEEEECSC
T ss_pred cccCC--cc--cccccccc--HHH-------Hhhh-CCccEEEecCc
Confidence 98752 11 11111221 111 2333 67899999874
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=90.08 E-value=0.088 Score=44.29 Aligned_cols=90 Identities=17% Similarity=0.201 Sum_probs=51.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|+||| .|.||..++..|..-+. .|. .+ |+.... + . . ..+.. .+..+.++.||+|
T Consensus 46 ktvgIiG-~G~IG~~va~~l~~fg~-----~v~--~~--d~~~~~--~--------~-~--~~~~~-~~l~~l~~~~D~v 101 (199)
T d1dxya1 46 QTVGVMG-TGHIGQVAIKLFKGFGA-----KVI--AY--DPYPMK--G--------D-H--PDFDY-VSLEDLFKQSDVI 101 (199)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTC-----EEE--EE--CSSCCS--S--------C-C--TTCEE-CCHHHHHHHCSEE
T ss_pred eeeeeee-cccccccccccccccce-----eee--cc--CCccch--h--------h-h--cchhH-HHHHHHHHhcccc
Confidence 6899999 59999999998876443 232 23 322111 0 0 0 01122 2456778999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
++.. |..+ +...++ | + +.++.. .+++++|+++=.
T Consensus 102 ~~~~--plt~--~T~~li--~----~---~~l~~m-k~~a~lIN~aRG 135 (199)
T d1dxya1 102 DLHV--PGIE--QNTHII--N----E---AAFNLM-KPGAIVINTARP 135 (199)
T ss_dssp EECC--CCCG--GGTTSB--C----H---HHHHHS-CTTEEEEECSCT
T ss_pred eeee--cccc--cccccc--c----H---HHhhcc-CCceEEEecccH
Confidence 9874 2111 111222 2 1 233343 688999999854
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.03 E-value=0.089 Score=42.33 Aligned_cols=25 Identities=28% Similarity=0.093 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||+|||| |..|...|..|+..|+
T Consensus 4 ~~kVaIIGa-GpaGl~aA~~l~~~G~ 28 (196)
T d1gtea4 4 SAKIALLGA-GPASISCASFLARLGY 28 (196)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCC
Confidence 469999995 9999999999999886
|
| >d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.02 E-value=0.34 Score=40.73 Aligned_cols=100 Identities=20% Similarity=0.200 Sum_probs=58.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-------------
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI------------- 164 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t------------- 164 (337)
+|.||| .|..|..++..+...++.+ +.+.-++.|. +.+. .+. ...++.+..
T Consensus 3 ~IkViG-vGGaG~n~vn~~~~~~~~~----v~~iainTD~--~~L~-------~~~--~~~ki~iG~~~t~G~Gagg~p~ 66 (198)
T d1rq2a1 3 VIKVVG-IGGGGVNAVNRMIEQGLKG----VEFIAINTDA--QALL-------MSD--ADVKLDVGRDSTRGLGAGADPE 66 (198)
T ss_dssp CEEEEE-EHHHHHHHHHHHHHTTCCS----EEEEEEESCH--HHHH-------HCC--CSEEEECCTTTC-----CCCHH
T ss_pred eEEEEE-eCchHHHHHHHHHHcCCCC----ceEEEEcchH--HHHh-------cCC--cchhhccccccccCCCcCcChh
Confidence 688999 6999999999999888743 5554444432 2222 111 111122110
Q ss_pred -----------CcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 165 -----------NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 165 -----------~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
.-.+.++++|+|++++|.-. .+- ..-.|++.+++++.... .|-++|-|-
T Consensus 67 ~g~~aa~e~~~~I~~~l~~~d~vfi~AGlGG---gTG----tGaaPviA~iake~g~l-----~v~ivt~PF 126 (198)
T d1rq2a1 67 VGRKAAEDAKDEIEELLRGADMVFVTAGEGG---GTG----TGGAPVVASIARKLGAL-----TVGVVTRPF 126 (198)
T ss_dssp HHHHHHHHTHHHHHHHHTTCSEEEEEEETTS---SHH----HHHHHHHHHHHHHHTCE-----EEEEEEECC
T ss_pred hhHhhHHHHHHHHHHHhcCCCEEEEEEecCC---CCC----cchHHHHHHHHHHcCCc-----EEEEEecCh
Confidence 12367889999999986532 211 12267888888765432 355666663
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=89.96 E-value=0.1 Score=43.32 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|||+|||| |..|.+.|..|+..|.
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G~ 24 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRGT 24 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTTC
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCC
Confidence 68999995 9999999999998875
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=89.61 E-value=0.15 Score=39.79 Aligned_cols=45 Identities=16% Similarity=0.048 Sum_probs=31.6
Q ss_pred ceeeeeeeccchhhhhhccCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 76 GVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 76 gv~~~~~~~~~~~~~~~~~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+||.++---+.+...+...+..||+|||| |.+|-.+|..|...+.
T Consensus 15 ~v~~lr~~~d~~~l~~~~~~~k~v~VIGg-G~iG~E~A~~l~~~g~ 59 (133)
T d1q1ra2 15 NFRYLRTLEDAECIRRQLIADNRLVVIGG-GYIGLEVAATAIKANM 59 (133)
T ss_dssp TEEESSSHHHHHHHHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CeeEeCCHHHHHHHHHhhccCCEEEEECC-chHHHHHHHHHHhhCc
Confidence 57666432222222334556789999995 9999999999998775
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=89.51 E-value=0.61 Score=37.00 Aligned_cols=70 Identities=24% Similarity=0.235 Sum_probs=41.0
Q ss_pred CCEEEEEcCCCc--hHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 96 MVNIAVSGAAGM--IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 96 ~~KI~IIGAaG~--VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
-.||++||=..+ |..+++..+..-+. .+.+ +. .+.....-+ . +.+ ....+++.+++..+++++|
T Consensus 3 gl~i~~vGD~~~sRv~~Sl~~~l~~~g~-----~~~~-~~-p~~~~~~~~-~---~~~---~~~~~~~~~~d~~eai~~a 68 (153)
T d1pg5a2 3 GLVFALLGDLKYARTVNSLLRILTRFRP-----KLVY-LI-SPQLLRARK-E---ILD---ELNYPVKEVENPFEVINEV 68 (153)
T ss_dssp TCEEEEEECCSSCHHHHHHHHHGGGSCC-----SEEE-EE-CCGGGCCCH-H---HHT---TCCSCEEEESCGGGTGGGC
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHcCC-----eeEE-Ee-cccccccch-h---hcc---cCCCeEEEEeCHHHHhhcC
Confidence 369999994223 88888887766553 1322 11 121111101 1 111 2234678888888999999
Q ss_pred cEEEEe
Q 019713 174 EWALLI 179 (337)
Q Consensus 174 DvVIit 179 (337)
|+|..+
T Consensus 69 Dvvy~~ 74 (153)
T d1pg5a2 69 DVLYVT 74 (153)
T ss_dssp SEEEEE
T ss_pred CeEEEe
Confidence 988765
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=89.50 E-value=2.2 Score=35.72 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=26.0
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 92 ~~~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++...|.|+||+|.||..++..|+..|.
T Consensus 5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga 34 (259)
T d2fr1a1 5 EWKPTGTVLVTGGTGGVGGQIARWLARRGA 34 (259)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTC
T ss_pred ccCCcCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 356667899999999999999999999885
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.43 E-value=0.12 Score=45.33 Aligned_cols=25 Identities=16% Similarity=0.020 Sum_probs=22.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.|+-|+||+|+||++++..|+..|.
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~ 26 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGY 26 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcC
Confidence 4788999999999999999999876
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=89.18 E-value=0.49 Score=38.89 Aligned_cols=96 Identities=13% Similarity=0.085 Sum_probs=53.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
-.+|+|+| .|.||..++..+..-+. .+.. +|.... ... . ......+..+.++.||+
T Consensus 44 ~~~vgiiG-~G~IG~~va~~l~~fg~-----~v~~--~d~~~~--~~~-------------~-~~~~~~~l~ell~~sDi 99 (188)
T d1sc6a1 44 GKKLGIIG-YGHIGTQLGILAESLGM-----YVYF--YDIENK--LPL-------------G-NATQVQHLSDLLNMSDV 99 (188)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--ECSSCC--CCC-------------T-TCEECSCHHHHHHHCSE
T ss_pred ceEEEEee-cccchhhhhhhcccccc-----eEee--cccccc--chh-------------h-hhhhhhhHHHHHhhccc
Confidence 36999999 59999999998766554 2332 332211 000 0 01111245678899999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC--chhHH
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP--CNTNA 229 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP--vd~~t 229 (337)
|++..... + +...++ | + +.++.. ++++++|+++=. +|.-+
T Consensus 100 i~i~~plt--~--~T~~li--~----~---~~l~~m-k~~a~lIN~aRG~lvde~a 141 (188)
T d1sc6a1 100 VSLHVPEN--P--STKNMM--G----A---KEISLM-KPGSLLINASRGTVVDIPA 141 (188)
T ss_dssp EEECCCSS--T--TTTTCB--C----H---HHHHHS-CTTEEEEECSCSSSBCHHH
T ss_pred eeecccCC--c--chhhhc--c----H---HHHhhC-CCCCEEEEcCcHHhhhhHH
Confidence 99875321 1 111111 1 1 123343 689999999843 45444
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=89.03 E-value=0.27 Score=39.62 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=33.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhH
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL 149 (337)
+|++|+|.|++|.||...+.-+-...- ...+..+....|-+++..++.++
T Consensus 1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d-----~f~v~~lsa~~N~~~L~~q~~ef 50 (150)
T d1r0ka2 1 QPRTVTVLGATGSIGHSTLDLIERNLD-----RYQVIALTANRNVKDLADAAKRT 50 (150)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTGG-----GEEEEEEEESSCHHHHHHHHHHT
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCCC-----CcEEEEEEeCCCHHHHHHHHHhh
Confidence 468999999999999998776654321 24444444556666666555443
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=89.01 E-value=2.2 Score=36.01 Aligned_cols=110 Identities=8% Similarity=0.095 Sum_probs=60.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecC---------ccc
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN---------PYE 168 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~---------~~e 168 (337)
...|+||++.+|..+|..|+..|. .|.+ . +++.+.++.... +.... . ...+++. -.+
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga-----~V~i--~--~r~~~~~~~~~~-~~~~~-~---~~dv~~~~~~~~~~~~~~~ 67 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGH-----TVAC--H--DESFKQKDELEA-FAETY-P---QLKPMSEQEPAELIEAVTS 67 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTC-----EEEE--C--CGGGGSHHHHHH-HHHHC-T---TSEECCCCSHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-----EEEE--E--ECCHHHHHHHHh-hhCcE-E---EeccCCHHHHHHHHHHHHH
Confidence 467999999999999999999885 2554 3 334333332211 11111 1 1122211 124
Q ss_pred ccCCCcEEEEeccc-C-CCCC--Cchhh---hHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 LFEDAEWALLIGAK-P-RGPG--MERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 al~dADvVIitag~-p-rk~g--~~R~d---ll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+..-|++|..+|. + .+|- .+..+ .+..| .-+.+...+.|.+- ..+.||+++-
T Consensus 68 ~~G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~--~~G~IV~isS 131 (252)
T d1zmta1 68 AYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKR--KSGHIIFITS 131 (252)
T ss_dssp HHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred HcCCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhccc--ccceeecccc
Confidence 45678999987764 2 2332 12222 23333 44567778888775 4456677763
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=88.83 E-value=0.56 Score=37.72 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=29.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhH
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL 149 (337)
--+|.|+|| |.||...+..+...|.. .|.. .|.++++++ .+.++
T Consensus 29 G~~VlV~Ga-G~iG~~~~~~ak~~Ga~----~Vi~----~~~~~~~~~-~a~~l 72 (182)
T d1vj0a2 29 GKTVVIQGA-GPLGLFGVVIARSLGAE----NVIV----IAGSPNRLK-LAEEI 72 (182)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTBS----EEEE----EESCHHHHH-HHHHT
T ss_pred CCEEEEECC-Cccchhheecccccccc----cccc----ccccccccc-ccccc
Confidence 358999995 99999888877776641 2433 355666665 33433
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=88.72 E-value=2.5 Score=35.88 Aligned_cols=113 Identities=11% Similarity=0.024 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC---c-----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN---P----- 166 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~---~----- 166 (337)
-+.|.|+||++-||..+|..|+..|.- +.+.. +.+ +.++.. .++.... + ..++.. ..| +
T Consensus 5 gK~vlITGgs~GIG~~~A~~la~~G~~-----vii~~-r~~---~~~~~~-~~~~~~~-~-~~~~~~~~~d~~~~~~~~~ 72 (254)
T d1sbya1 5 NKNVIFVAALGGIGLDTSRELVKRNLK-----NFVIL-DRV---ENPTAL-AELKAIN-P-KVNITFHTYDVTVPVAESK 72 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTCCS-----EEEEE-ESS---CCHHHH-HHHHHHC-T-TSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCE-----EEEEE-CCc---ccHHHH-HHHHhhC-C-CCCEEEEEeecCCCHHHHH
Confidence 357999999999999999999998862 44421 122 222222 1122111 1 111111 111 1
Q ss_pred ------ccccCCCcEEEEecccCCCCCCchhhhHHhhH----HHHHHHHHHHHhhc-CCCeEEEEeC
Q 019713 167 ------YELFEDAEWALLIGAKPRGPGMERAGLLDING----QIFAEQGKALNAVA-SRNVKVIVVG 222 (337)
Q Consensus 167 ------~eal~dADvVIitag~prk~g~~R~dll~~N~----~I~~~i~~~I~~~a-~p~aivIvvt 222 (337)
.+.+...|++|..||...... -...+..|. -..+...+.+.+-. .+.+.||+++
T Consensus 73 ~~~~~~~~~~g~iDilvnnAG~~~~~~--~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~is 137 (254)
T d1sbya1 73 KLLKKIFDQLKTVDILINGAGILDDHQ--IERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANIC 137 (254)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCTTC--HHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred HHHHHHHHHcCCCCEEEeCCCCCCHHH--HHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEe
Confidence 123467899999888653222 223344453 35666677775531 2457777776
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=88.55 E-value=0.18 Score=38.63 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=30.3
Q ss_pred ceeeeeeeccchhhhhh--ccCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 76 GVFCLTYDLKAEEETKS--WKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 76 gv~~~~~~~~~~~~~~~--~~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|||.+..--+....... ..+..+|+|||| |.+|..+|..|...+.
T Consensus 8 ~v~~~~~~~da~~i~~~~~~~~~k~vvViGg-G~iG~E~A~~l~~~g~ 54 (123)
T d1nhpa2 8 NIYLMRGRQWAIKLKQKTVDPEVNNVVVIGS-GYIGIEAAEAFAKAGK 54 (123)
T ss_dssp SEECCCHHHHHHHHHHHHTCTTCCEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CeEEeCCHHHHHHHHHHhhccCCCEEEEECC-hHHHHHHHHHhhccce
Confidence 67765442222222222 234679999995 9999999999998775
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=88.52 E-value=0.26 Score=40.20 Aligned_cols=73 Identities=15% Similarity=0.042 Sum_probs=43.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhh---HHHhHHHhHhhhccCCcccEEEec-Cc----c
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ---ALEGVAMELEDSLFPLLREVKIGI-NP----Y 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~---~l~g~a~DL~d~~~~~~~~v~i~t-~~----~ 167 (337)
..+|.|+|| |.+|.++++.|...+.- .+.+ + +++.+ ++...+.++.... . ..+.+.. .+ .
T Consensus 18 ~k~vlIlGa-GGaarai~~al~~~g~~----~i~i--~--nR~~~~~~~~~~l~~~~~~~~-~--~~~~~~~~~~~~~~~ 85 (182)
T d1vi2a1 18 GKTMVLLGA-GGASTAIGAQGAIEGLK----EIKL--F--NRRDEFFDKALAFAQRVNENT-D--CVVTVTDLADQQAFA 85 (182)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCS----EEEE--E--ECSSTTHHHHHHHHHHHHHHS-S--CEEEEEETTCHHHHH
T ss_pred CCEEEEECC-cHHHHHHHHHHhhcCCc----eEee--e--ccchHHHHHHHHHHHHHHhhc-C--cceEeeecccccchh
Confidence 469999995 99999999999988762 2544 2 33333 3333433343322 2 2233321 11 2
Q ss_pred cccCCCcEEEEec
Q 019713 168 ELFEDAEWALLIG 180 (337)
Q Consensus 168 eal~dADvVIita 180 (337)
+.+.++|+||.+-
T Consensus 86 ~~~~~~diiIN~T 98 (182)
T d1vi2a1 86 EALASADILTNGT 98 (182)
T ss_dssp HHHHTCSEEEECS
T ss_pred hhhcccceecccc
Confidence 4567999999874
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=88.52 E-value=0.41 Score=35.32 Aligned_cols=75 Identities=19% Similarity=0.146 Sum_probs=46.4
Q ss_pred hccCCCEEEEEcCCCchH-HHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCccccc
Q 019713 92 SWKKMVNIAVSGAAGMIA-NHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF 170 (337)
Q Consensus 92 ~~~~~~KI~IIGAaG~VG-~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal 170 (337)
++.+.+||-+|| .|-+| +++|..|...|.. |.- .|..... ...+|.+.. ..+... ...+.+
T Consensus 4 ~~~~~~~ihfiG-igG~GMs~LA~~L~~~G~~-----VsG----SD~~~~~---~~~~L~~~G----i~v~~g-~~~~~i 65 (96)
T d1p3da1 4 EMRRVQQIHFIG-IGGAGMSGIAEILLNEGYQ-----ISG----SDIADGV---VTQRLAQAG----AKIYIG-HAEEHI 65 (96)
T ss_dssp CCTTCCEEEEET-TTSTTHHHHHHHHHHHTCE-----EEE----EESCCSH---HHHHHHHTT----CEEEES-CCGGGG
T ss_pred cchhCCEEEEEE-ECHHHHHHHHHHHHhCCCE-----EEE----EeCCCCh---hhhHHHHCC----CeEEEC-CccccC
Confidence 456678999999 48888 4578999888872 443 3332211 112233221 234433 345678
Q ss_pred CCCcEEEEecccCC
Q 019713 171 EDAEWALLIGAKPR 184 (337)
Q Consensus 171 ~dADvVIitag~pr 184 (337)
+++|+||.+.+.|.
T Consensus 66 ~~~d~vV~S~AI~~ 79 (96)
T d1p3da1 66 EGASVVVVSSAIKD 79 (96)
T ss_dssp TTCSEEEECTTSCT
T ss_pred CCCCEEEECCCcCC
Confidence 99999999887763
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.45 E-value=0.16 Score=42.38 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=23.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++..||+|||| |.-|-+.|..|+..|+
T Consensus 3 ~~~~kViVIGa-G~aGL~aA~~L~~~G~ 29 (449)
T d2dw4a2 3 KKTGKVIIIGS-GVSGLAAARQLQSFGM 29 (449)
T ss_dssp SCCCEEEEECC-BHHHHHHHHHHHHTTC
T ss_pred CCCCcEEEECC-CHHHHHHHHHHHhCCC
Confidence 45679999995 9999999999999886
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=88.42 E-value=0.14 Score=42.27 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+||+|||| |..|-+.|+.|+..|+
T Consensus 2 KkV~IIGa-G~aGL~aA~~La~~G~ 25 (373)
T d1seza1 2 KRVAVIGA-GVSGLAAAYKLKIHGL 25 (373)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTTSC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC
Confidence 58999995 9999999999998876
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=88.39 E-value=0.67 Score=39.55 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=45.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC----------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN---------- 165 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~---------- 165 (337)
+.|.|+||++-||.++|..|+..|. .|.+.. ..+++.++..+.++.+... ++. +..|
T Consensus 7 K~alITGas~GIG~aia~~la~~G~-----~Vvi~~---~~~~~~~~~~~~~~~~~g~----~~~~~~~D~~~~~~v~~~ 74 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGA-----SVVVNY---GSSSKAAEEVVAELKKLGA----QGVAIQADISKPSEVVAL 74 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEEEE---SSCHHHHHHHHHHHHHTTC----CEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-----EEEEEc---CCChHHHHHHHHHHHHcCC----CceEecCCCCCHHHHHHH
Confidence 4678999999999999999999886 254421 2344555555555554321 111 1111
Q ss_pred ---cccccCCCcEEEEecccC
Q 019713 166 ---PYELFEDAEWALLIGAKP 183 (337)
Q Consensus 166 ---~~eal~dADvVIitag~p 183 (337)
-.+.+..-|++|..+|..
T Consensus 75 ~~~~~~~~g~idilinnag~~ 95 (259)
T d1ja9a_ 75 FDKAVSHFGGLDFVMSNSGME 95 (259)
T ss_dssp HHHHHHHHSCEEEEECCCCCC
T ss_pred HHHHHHHcCCCcEEEeccccc
Confidence 123445788999887753
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=88.29 E-value=0.4 Score=38.57 Aligned_cols=50 Identities=14% Similarity=0.204 Sum_probs=34.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
|+||+|.|++|.||.+.+--+....- ...+..+-...|-+.+..++.++.
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d-----~f~v~~Lsa~~N~~~L~~q~~~f~ 50 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPE-----HFRVVALVAGKNVTRMVEQCLEFS 50 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTT-----TEEEEEEEESSCHHHHHHHHHHHC
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCC-----CcEEEEEEecCcHHHHHHHHHHHh
Confidence 56899999999999998776655321 244444445666677776666554
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=88.05 E-value=0.66 Score=37.43 Aligned_cols=41 Identities=12% Similarity=-0.034 Sum_probs=26.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHH
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE 143 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~ 143 (337)
++--+|.|+|| |.||...++.+...+.. .|.. .|.++++++
T Consensus 26 ~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~----~Vi~----~d~~~~r~~ 66 (174)
T d1jqba2 26 EMGSSVVVIGI-GAVGLMGIAGAKLRGAG----RIIG----VGSRPICVE 66 (174)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHTTTCS----CEEE----ECCCHHHHH
T ss_pred CCCCEEEEEcC-Ccchhhhhhhhhccccc----cccc----ccchhhhHH
Confidence 34458999995 99999888777655541 2433 355556654
|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=87.49 E-value=0.63 Score=39.30 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE 136 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d 136 (337)
...||.||| .|.-|..++..+...++-+ +.+..++.|
T Consensus 14 ~~~ki~ViG-vGGaG~n~v~~l~~~~~~~----v~~iainTD 50 (209)
T d2vapa1 14 TKAKITVVG-CGGAGNNTITRLKMEGIEG----AKTVAINTD 50 (209)
T ss_dssp TCCCEEEEE-EHHHHHHHHHHHHHHTCTT----EEEEEEESB
T ss_pred cCCcEEEEE-eCChHHHHHHHHHHcCCCc----eEEEEEeCC
Confidence 347999999 5999999999999888743 554444443
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=87.48 E-value=0.34 Score=36.41 Aligned_cols=27 Identities=15% Similarity=0.002 Sum_probs=22.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+..+|+|||+ |.+|.-+|..|...+.
T Consensus 20 ~~~~~vvVvGg-G~ig~E~A~~l~~~g~ 46 (121)
T d1mo9a2 20 EPGSTVVVVGG-SKTAVEYGCFFNATGR 46 (121)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcch
Confidence 34579999995 9999999999987764
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=87.10 E-value=0.17 Score=40.39 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.||+|||| |..|.+.|..|+..|+
T Consensus 1 P~V~IIGa-G~aGL~aA~~L~~~G~ 24 (347)
T d1b5qa1 1 PRVIVVGA-GMSGISAAKRLSEAGI 24 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHHTTC
T ss_pred CCEEEECC-cHHHHHHHHHHHhCCC
Confidence 37999995 9999999999999875
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=86.89 E-value=0.53 Score=38.03 Aligned_cols=69 Identities=19% Similarity=0.136 Sum_probs=36.3
Q ss_pred CCEEEEEcCCCchHHH-HHHHHHHc-CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC--
Q 019713 96 MVNIAVSGAAGMIANH-LLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-- 171 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~-la~~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~-- 171 (337)
.+||+||| +|.+|.. .+..+... +.+ .|. .+. |++.++++..+-+.. ...++++-.+.++
T Consensus 3 kirigiIG-~G~~g~~~h~~~l~~~~~~~----~i~-~v~--d~~~~~~~~~~~~~~--------~~~~~~~~~ell~~~ 66 (181)
T d1zh8a1 3 KIRLGIVG-CGIAARELHLPALKNLSHLF----EIT-AVT--SRTRSHAEEFAKMVG--------NPAVFDSYEELLESG 66 (181)
T ss_dssp CEEEEEEC-CSHHHHHTHHHHHHTTTTTE----EEE-EEE--CSSHHHHHHHHHHHS--------SCEEESCHHHHHHSS
T ss_pred CcEEEEEc-CCHHHHHHHHHHHHhCCCCe----EEE-EEE--eccHhhhhhhhcccc--------ccceeeeeecccccc
Confidence 47999999 5999986 45656542 211 122 122 455555543322221 1123444334443
Q ss_pred CCcEEEEec
Q 019713 172 DAEWALLIG 180 (337)
Q Consensus 172 dADvVIita 180 (337)
+.|+|+++.
T Consensus 67 ~id~v~I~t 75 (181)
T d1zh8a1 67 LVDAVDLTL 75 (181)
T ss_dssp CCSEEEECC
T ss_pred ccceeeccc
Confidence 678888763
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.82 E-value=3.3 Score=32.14 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=23.9
Q ss_pred ccCCCEEEEEcCC---CchHHHHHHHHHHcCC
Q 019713 93 WKKMVNIAVSGAA---GMIANHLLFKLAAGEV 121 (337)
Q Consensus 93 ~~~~~KI~IIGAa---G~VG~~la~~L~~~~l 121 (337)
..+++.|+||||+ +..|+.++..|...|.
T Consensus 16 L~~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~ 47 (139)
T d2d59a1 16 LTRYKKIALVGASPKPERDANIVMKYLLEHGY 47 (139)
T ss_dssp HHHCCEEEEETCCSCTTSHHHHHHHHHHHTTC
T ss_pred HhcCCeEEEEeecCCCCCchHHHHHHHHHCCC
Confidence 4456799999986 5699999999988775
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.74 E-value=0.57 Score=36.96 Aligned_cols=26 Identities=19% Similarity=0.104 Sum_probs=21.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
++-.+|.|+|+ |.||...+..+...+
T Consensus 26 ~~g~~VlV~Ga-G~vG~~~~~~ak~~G 51 (166)
T d1llua2 26 RPGQWVAISGI-GGLGHVAVQYARAMG 51 (166)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT
T ss_pred CCCCEEEEeec-cccHHHHHHHHHHcC
Confidence 44568999995 999999888777766
|
| >d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.55 E-value=0.71 Score=38.70 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=26.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE 136 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d 136 (337)
-+|.||| .|..|..++..+...++.+ +.+..++.|
T Consensus 2 a~IkViG-vGGaG~n~v~~~~~~~~~~----v~~iainTD 36 (198)
T d1ofua1 2 AVIKVIG-VGGGGGNAVNHMAKNNVEG----VEFICANTD 36 (198)
T ss_dssp CCEEEEE-EHHHHHHHHHHHHHTTCCS----EEEEEEESB
T ss_pred ceEEEEE-ECchHHHHHHHHHHcCCCC----eEEEEEeCc
Confidence 3688999 6999999999999888642 555555554
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.54 E-value=0.15 Score=42.06 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++.||+|||| |.-|.+.|..|+..|.
T Consensus 1 rp~~VaVIGa-GpaGL~aA~~L~~~G~ 26 (239)
T d1lqta2 1 RPYYIAIVGS-GPSAFFAAASLLKAAD 26 (239)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECc-CHHHHHHHHHHHHcCC
Confidence 3579999995 9999999999998763
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=86.47 E-value=0.22 Score=44.26 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++||+|||| |.-|.+.|..|+..|.
T Consensus 1 k~KKI~IIGa-G~sGL~aA~~L~k~G~ 26 (314)
T d2bi7a1 1 KSKKILIVGA-GFSGAVIGRQLAEKGH 26 (314)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTC
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhCCC
Confidence 4579999995 9999999999998664
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.39 E-value=0.24 Score=42.34 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=22.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.||+|||| |.+|.++|..|...|+
T Consensus 3 ~~V~IvGa-Gp~Gl~~A~~L~~~G~ 26 (292)
T d1k0ia1 3 TQVAIIGA-GPSGLLLGQLLHKAGI 26 (292)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHHTC
T ss_pred CCEEEECc-CHHHHHHHHHHHHCCC
Confidence 38999996 9999999999999987
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=85.95 E-value=0.28 Score=41.39 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+..-|.|||| |-+|.++|+.|+..|.
T Consensus 3 ~~~DvvIIGa-Gi~Gls~A~~La~~G~ 28 (276)
T d1ryia1 3 RHYEAVVIGG-GIIGSAIAYYLAKENK 28 (276)
T ss_dssp SEEEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred ccCCEEEECc-CHHHHHHHHHHHHCCC
Confidence 3345999995 9999999999999885
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=85.84 E-value=0.82 Score=36.22 Aligned_cols=131 Identities=15% Similarity=0.010 Sum_probs=65.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecC---ccccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN---PYELF 170 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~---~~eal 170 (337)
++-.+|.|+|+ |.||...++.+...|. .++. .+.+.++++ .+.++.- . .+.-+.+ .....
T Consensus 29 ~~G~~VlI~Ga-G~vG~~a~qlak~~Ga-----~~i~----~~~~~~~~~-~a~~lGa-----d-~~i~~~~~~~~~~~~ 91 (168)
T d1uufa2 29 GPGKKVGVVGI-GGLGHMGIKLAHAMGA-----HVVA----FTTSEAKRE-AAKALGA-----D-EVVNSRNADEMAAHL 91 (168)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----EESSGGGHH-HHHHHTC-----S-EEEETTCHHHHHTTT
T ss_pred CCCCEEEEecc-chHHHHHHHHhhcccc-----cchh----hccchhHHH-HHhccCC-----c-EEEECchhhHHHHhc
Confidence 34468999995 9999988877766654 1222 233334433 2232321 0 1111111 22445
Q ss_pred CCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHH-HHHHH-CCCCCCCeEEe--
Q 019713 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL-ICLKN-APSIPAKNFHA-- 246 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~-i~~k~-s~~~p~kvIG~-- 246 (337)
++.|+||.+.|.+.. +. ..++- ..+++++++++-|.+.... ..... ...+ +++|.
T Consensus 92 ~~~D~vid~~g~~~~---------------~~---~~~~~-l~~~G~iv~~G~~~~~~~~~~~~~l~~k~~--~i~Gs~~ 150 (168)
T d1uufa2 92 KSFDFILNTVAAPHN---------------LD---DFTTL-LKRDGTMTLVGAPATPHKSPEVFNLIMKRR--AIAGSMI 150 (168)
T ss_dssp TCEEEEEECCSSCCC---------------HH---HHHTT-EEEEEEEEECCCC-------CHHHHHTTTC--EEEECCS
T ss_pred CCCceeeeeeecchh---------------HH---HHHHH-HhcCCEEEEeccCCCCcccccHHHHHHCCc--EEEEEee
Confidence 689999988764320 11 12223 3678898888866543211 11111 1112 45664
Q ss_pred cCchhHHHHHHHHHHH
Q 019713 247 LTRLDENRAKCQLALK 262 (337)
Q Consensus 247 gT~LDs~R~~~~lA~~ 262 (337)
++.-|..++-.+++++
T Consensus 151 ~~~~d~~e~l~l~a~~ 166 (168)
T d1uufa2 151 GGIPETQEMLDFCAEH 166 (168)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHc
Confidence 4666666666666553
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=85.53 E-value=3.5 Score=32.88 Aligned_cols=97 Identities=12% Similarity=0.082 Sum_probs=54.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCc--cc-----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP--YE----- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~--~e----- 168 (337)
--.|.|+|+ |.+|...+..+...+.. .|.. +|.++++++ .+.++.-.. -+.....+ .+
T Consensus 30 g~tVlI~G~-GgvGl~ai~~ak~~G~~----~Vi~----vd~~~~kl~-~Ak~~GA~~-----~in~~~~~~~~~~~~~~ 94 (176)
T d1d1ta2 30 GSTCVVFGL-GGVGLSVIMGCKSAGAS----RIIG----IDLNKDKFE-KAMAVGATE-----CISPKDSTKPISEVLSE 94 (176)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCS----EEEE----ECSCGGGHH-HHHHHTCSE-----EECGGGCSSCHHHHHHH
T ss_pred CCEEEEECC-CchhHHHHHHHHHcCCc----eEEE----ecCcHHHHH-HHHhcCCcE-----EECccccchHHHHHHHH
Confidence 347999995 99999998888776652 2433 356667766 445443111 01001111 11
Q ss_pred -ccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 169 -LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 169 -al~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
.-.++|+||.+.|.+ ..+.+- +.....+++++++++.|.
T Consensus 95 ~~g~G~d~vi~~~g~~---------------~~~~~a---~~~~~~~~G~~v~vG~~~ 134 (176)
T d1d1ta2 95 MTGNNVGYTFEVIGHL---------------ETMIDA---LASCHMNYGTSVVVGVPP 134 (176)
T ss_dssp HHTSCCCEEEECSCCH---------------HHHHHH---HTTSCTTTCEEEECSCCC
T ss_pred hccccceEEEEeCCch---------------HHHHHH---HHHhhcCCeEEEEEEccc
Confidence 225899999876532 222222 223323457889998764
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.22 E-value=0.47 Score=36.17 Aligned_cols=32 Identities=19% Similarity=-0.013 Sum_probs=26.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEE
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALK 131 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~ 131 (337)
..+.||+|||| |.+|.-+|..|...|. .|.|.
T Consensus 18 ~~P~~vvIIGg-G~iG~E~A~~l~~lG~-----~Vtii 49 (122)
T d1h6va2 18 YCPGKTLVVGA-SYVALECAGFLAGIGL-----DVTVM 49 (122)
T ss_dssp SCCCSEEEECC-SHHHHHHHHHHHHTTC-----CEEEE
T ss_pred cCCCeEEEECC-CccHHHHHHHHhhcCC-----eEEEE
Confidence 35679999996 9999999999998775 36654
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=84.69 E-value=1 Score=32.69 Aligned_cols=70 Identities=11% Similarity=-0.009 Sum_probs=43.4
Q ss_pred CEEEEEcCCCchHH-HHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 97 VNIAVSGAAGMIAN-HLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 97 ~KI~IIGAaG~VG~-~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|||-+|| .|-+|. ++|..|...|.. |.= .|....... ..|++.. .++.. ..+.+.++++|+
T Consensus 2 ~~ihfiG-IgG~GMs~LA~~L~~~G~~-----VsG----SD~~~~~~t---~~L~~~G----i~i~~-gh~~~~i~~~d~ 63 (89)
T d1j6ua1 2 MKIHFVG-IGGIGMSAVALHEFSNGND-----VYG----SNIEETERT---AYLRKLG----IPIFV-PHSADNWYDPDL 63 (89)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCE-----EEE----ECSSCCHHH---HHHHHTT----CCEES-SCCTTSCCCCSE
T ss_pred cEEEEEe-ECHHHHHHHHHHHHhCCCe-----EEE----EeCCCChhH---HHHHHCC----CeEEe-eecccccCCCCE
Confidence 7899999 588887 478888888862 443 333322111 1244322 12322 245677899999
Q ss_pred EEEecccCC
Q 019713 176 ALLIGAKPR 184 (337)
Q Consensus 176 VIitag~pr 184 (337)
||.+.+.|.
T Consensus 64 vV~SsAI~~ 72 (89)
T d1j6ua1 64 VIKTPAVRD 72 (89)
T ss_dssp EEECTTCCT
T ss_pred EEEecCcCC
Confidence 999988763
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=84.68 E-value=0.45 Score=36.85 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=20.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
+||.|||| |.+|..+|..|...+
T Consensus 3 krivIvGg-G~~G~e~A~~l~~~~ 25 (186)
T d1fcda1 3 RKVVVVGG-GTGGATAAKYIKLAD 25 (186)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHC
T ss_pred CcEEEECc-cHHHHHHHHHHHHcC
Confidence 59999996 999999999998765
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.59 E-value=0.48 Score=35.51 Aligned_cols=27 Identities=22% Similarity=0.119 Sum_probs=23.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..+.||+|||| |.+|.-+|..|...|.
T Consensus 20 ~~p~~v~IiGg-G~ig~E~A~~l~~~G~ 46 (117)
T d1ebda2 20 EVPKSLVVIGG-GYIGIELGTAYANFGT 46 (117)
T ss_dssp SCCSEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred hcCCeEEEECC-Cccceeeeeeeccccc
Confidence 34689999996 9999999999998775
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.36 E-value=1.6 Score=33.86 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
-++|.|||| |.+|..-+..|...|.
T Consensus 13 gkrvLViGg-G~va~~ka~~Ll~~GA 37 (150)
T d1kyqa1 13 DKRILLIGG-GEVGLTRLYKLMPTGC 37 (150)
T ss_dssp TCEEEEEEE-SHHHHHHHHHHGGGTC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC
Confidence 469999996 9999999999988775
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=84.19 E-value=0.74 Score=37.48 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
|.||+|-| -|.||..++..|...+
T Consensus 1 M~~VgING-fGRIGR~v~R~l~~~~ 24 (171)
T d1cf2o1 1 MKAVAING-YGTVGKRVADAIAQQD 24 (171)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTSS
T ss_pred CeEEEEEc-CcHHHHHHHHHHHhCC
Confidence 67999999 6999999998876655
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.01 E-value=0.49 Score=39.06 Aligned_cols=24 Identities=21% Similarity=0.113 Sum_probs=20.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.||+|||| |..|.+.|..|...+.
T Consensus 2 ~kv~iIGa-GpaGl~aA~~L~~~~~ 25 (230)
T d1cjca2 2 PQICVVGS-GPAGFYTAQHLLKHHS 25 (230)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCS
T ss_pred CeEEEECc-cHHHHHHHHHHHhcCC
Confidence 59999995 9999999999986643
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=83.91 E-value=0.47 Score=39.01 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
|.||+|.| .|.||..++..+...+
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~~ 24 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQP 24 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCT
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhCC
Confidence 67999999 6999999999988754
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=83.89 E-value=0.6 Score=39.48 Aligned_cols=26 Identities=27% Similarity=0.096 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCc--hHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGM--IANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~--VG~~la~~L~~~~l 121 (337)
-++|.|+||+|. +|.++|..|+..|.
T Consensus 6 gK~~lItGaag~~GIG~aiA~~la~~Ga 33 (268)
T d2h7ma1 6 GKRILVSGIITDSSIAFHIARVAQEQGA 33 (268)
T ss_dssp TCEEEECCCSSTTCHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 358999997665 99999999999886
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=83.81 E-value=0.32 Score=39.43 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=20.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
|||.|||| |.+|..+|..|...+
T Consensus 1 ~KVvIIGg-G~~G~e~A~~l~~~~ 23 (198)
T d1nhpa1 1 MKVIVLGS-SHGGYEAVEELLNLH 23 (198)
T ss_dssp CEEEEECS-SHHHHHHHHHHHHHC
T ss_pred CEEEEECC-cHHHHHHHHHHHhcC
Confidence 79999996 999999999997644
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=83.63 E-value=0.27 Score=37.49 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=23.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..+..+|+|||| |.+|--+|..|...+.
T Consensus 29 ~~~~~~vvIiGg-G~iG~E~A~~l~~~g~ 56 (122)
T d1xhca2 29 IENSGEAIIIGG-GFIGLELAGNLAEAGY 56 (122)
T ss_dssp HHHHSEEEEEEC-SHHHHHHHHHHHHTTC
T ss_pred hhcCCcEEEECC-cHHHHHHHHHhhcccc
Confidence 344579999996 9999999999998775
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=83.00 E-value=1.4 Score=37.98 Aligned_cols=49 Identities=14% Similarity=0.046 Sum_probs=35.1
Q ss_pred EEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 160 v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+++++++.+++++||+||++...+ ++..++.+.|.++..++++|+..|.
T Consensus 129 v~v~~d~~Eav~~ADiII~~vP~~---------------~~v~~Vi~~I~~~l~~g~Iiid~ST 177 (242)
T d2b0ja2 129 LKVTSDDREAVEGADIVITWLPKG---------------NKQPDIIKKFADAIPEGAIVTHACT 177 (242)
T ss_dssp CEEESCHHHHHTTCSEEEECCTTC---------------TTHHHHHHHHGGGSCTTCEEEECSS
T ss_pred CEEECCHHHHHhcCCeEEEeeecH---------------HHHHHHHHHHHhhCCCCcEEEecCC
Confidence 778889999999999999875221 2245556777777777887665553
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=82.94 E-value=0.36 Score=39.50 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
++||+|.| .|.||..++..+...+
T Consensus 2 ~irIaING-fGRIGR~v~Ral~~~~ 25 (172)
T d2czca2 2 KVKVGVNG-YGTIGKRVAYAVTKQD 25 (172)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCT
T ss_pred cEEEEEEC-CCHHHHHHHHHHHhCC
Confidence 46999999 5999999998887654
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=82.91 E-value=1 Score=38.08 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=21.8
Q ss_pred CEEEEEcCCC--chHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAG--MIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG--~VG~~la~~L~~~~l 121 (337)
+++.|+||+| -+|.++|..|+..|.
T Consensus 9 K~alITGas~~~GIG~aiA~~la~~Ga 35 (256)
T d1ulua_ 9 KKALVMGVTNQRSLGFAIAAKLKEAGA 35 (256)
T ss_dssp CEEEEESCCCSSSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCchHHHHHHHHHHHCCC
Confidence 5788999877 599999999999886
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=82.55 E-value=0.58 Score=35.13 Aligned_cols=26 Identities=27% Similarity=0.137 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+.||.|||| |.+|..+|..|...|.
T Consensus 20 ~p~~vvIiGg-G~ig~E~A~~l~~~G~ 45 (116)
T d1gesa2 20 LPERVAVVGA-GYIGVELGGVINGLGA 45 (116)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECC-ChhhHHHHHHhhcccc
Confidence 4679999995 9999999999988775
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.42 E-value=1.5 Score=35.46 Aligned_cols=87 Identities=14% Similarity=0.135 Sum_probs=53.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|+|+| .|.||..+|..+...+. .|.. +|.|+. ..+++. || . ..+ ....+++..+|+|
T Consensus 25 k~v~V~G-yG~iG~g~A~~~rg~G~-----~V~v--~e~dp~-~al~A~-~d------G----~~v-~~~~~a~~~adiv 83 (163)
T d1li4a1 25 KVAVVAG-YGDVGKGCAQALRGFGA-----RVII--TEIDPI-NALQAA-ME------G----YEV-TTMDEACQEGNIF 83 (163)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--ECSCHH-HHHHHH-HT------T----CEE-CCHHHHTTTCSEE
T ss_pred CEEEEec-cccccHHHHHHHHhCCC-----eeEe--eecccc-hhHHhh-cC------c----eEe-eehhhhhhhccEE
Confidence 6899999 79999999999987665 2443 344432 233322 21 1 112 1356889999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
|.+-|.+. -|-+ +.+++. ++++++.+++
T Consensus 84 vtaTGn~~--------------vI~~---eh~~~M-KdgaIL~N~G 111 (163)
T d1li4a1 84 VTTTGCID--------------IILG---RHFEQM-KDDAIVCNIG 111 (163)
T ss_dssp EECSSCSC--------------SBCH---HHHTTC-CTTEEEEECS
T ss_pred EecCCCcc--------------chhH---HHHHhc-cCCeEEEEec
Confidence 88754321 0112 234444 6788888876
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=82.37 E-value=0.8 Score=32.67 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++|+|+|+ |+.|.-++..-..-|+
T Consensus 1 ~k~vgIlG~-GQLgrMl~~Aa~~LG~ 25 (78)
T d3etja2 1 MKQVCVLGN-GQLGRMLRQAGEPLGI 25 (78)
T ss_dssp CEEEEEEBC-SHHHHHHHHHHGGGTE
T ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCC
Confidence 468999995 9999998887665553
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.35 E-value=0.46 Score=37.38 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
||+|+||+|.||+.++..+....
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~ 23 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAAD 23 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHST
T ss_pred CEEEECCCCHHHHHHHHHHHhCC
Confidence 89999999999999988877644
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=82.25 E-value=3.5 Score=32.75 Aligned_cols=41 Identities=15% Similarity=0.007 Sum_probs=28.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHH
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE 143 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~ 143 (337)
++--+|.|+|| |.+|...+..+...+.. .|.. .|.++++++
T Consensus 26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~----~Vi~----~d~~~~kl~ 66 (174)
T d1p0fa2 26 TPGSTCAVFGL-GGVGFSAIVGCKAAGAS----RIIG----VGTHKDKFP 66 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCS----EEEE----ECSCGGGHH
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCc----eeec----cCChHHHHH
Confidence 44458999995 99999998888776642 2433 355566655
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=82.21 E-value=0.55 Score=40.19 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+|.|||| |-+|.++|+.|+..+.
T Consensus 2 ~dViIIGa-Gi~G~s~A~~La~~G~ 25 (305)
T d1pj5a2 2 PRIVIIGA-GIVGTNLADELVTRGW 25 (305)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCEEEECc-CHHHHHHHHHHHHcCC
Confidence 48999995 9999999999998775
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=82.05 E-value=0.64 Score=35.11 Aligned_cols=27 Identities=26% Similarity=0.117 Sum_probs=23.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..+.||+|||| |.+|--+|..++..|.
T Consensus 20 ~~p~~i~IiG~-G~ig~E~A~~l~~~G~ 46 (119)
T d3lada2 20 NVPGKLGVIGA-GVIGLELGSVWARLGA 46 (119)
T ss_dssp SCCSEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred cCCCeEEEECC-ChHHHHHHHHHHHcCC
Confidence 45689999995 9999999999998775
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.91 E-value=0.83 Score=38.38 Aligned_cols=45 Identities=16% Similarity=0.094 Sum_probs=32.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
+.+.|+||++.+|.+++..|+..|. .|.+. +++.+.++..+.++.
T Consensus 6 KvalITGas~GIG~aia~~la~~G~-----~V~~~----~r~~~~~~~~~~~l~ 50 (248)
T d2o23a1 6 LVAVITGGASGLGLATAERLVGQGA-----SAVLL----DLPNSGGEAQAKKLG 50 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ECTTSSHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----eCChHHHHHHHHHhC
Confidence 4567999999999999999999886 25442 445566665555554
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.84 E-value=2 Score=40.94 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=22.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.||+|||+ |.+|..++..|+..|+
T Consensus 26 s~VlvvG~-gglG~Ei~knLvl~GV 49 (529)
T d1yova1 26 AHVCLINA-TATGTEILKNLVLPGI 49 (529)
T ss_dssp CEEEECCC-SHHHHHHHHHHHTTTC
T ss_pred CCEEEECC-CHHHHHHHHHHHHhcC
Confidence 59999995 9999999999999887
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=81.61 E-value=0.93 Score=38.79 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+-++|+|-| .|+||+.+|..|...|.
T Consensus 38 ~g~~v~IqG-~GnVG~~~a~~L~~~Ga 63 (230)
T d1leha1 38 EGLAVSVQG-LGNVAKALCKKLNTEGA 63 (230)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCC
Confidence 457999999 69999999999988775
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=81.51 E-value=0.94 Score=36.18 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+-.+|.|+|| |.||...+..+...+.
T Consensus 28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~ 53 (174)
T d1f8fa2 28 PASSFVTWGA-GAVGLSALLAAKVCGA 53 (174)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCC-CHHHhhhhhccccccc
Confidence 3458999996 9999999888776664
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=81.48 E-value=0.96 Score=38.41 Aligned_cols=26 Identities=15% Similarity=-0.036 Sum_probs=22.5
Q ss_pred CCEEEEEcCCC--chHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAG--MIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG--~VG~~la~~L~~~~l 121 (337)
-+++.|+||+| -||.++|..|+..|.
T Consensus 5 gK~alITGaag~~GIG~AiA~~la~~Ga 32 (274)
T d2pd4a1 5 GKKGLIVGVANNKSIAYGIAQSCFNQGA 32 (274)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTC
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHCCC
Confidence 36899999877 499999999998886
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=81.43 E-value=6.4 Score=31.20 Aligned_cols=97 Identities=13% Similarity=0.040 Sum_probs=53.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCc--------c
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP--------Y 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~--------~ 167 (337)
--+|.|+|+ |.||...+..+...+.- .|.. .|.++++++ .+.++--.. -+.....+ .
T Consensus 29 G~~VlV~G~-G~iGl~a~~~ak~~Ga~----~Vi~----~d~~~~r~~-~a~~~Ga~~-----~i~~~~~~~~~~~~~~~ 93 (174)
T d1e3ia2 29 GSTCAVFGL-GCVGLSAIIGCKIAGAS----RIIA----IDINGEKFP-KAKALGATD-----CLNPRELDKPVQDVITE 93 (174)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCS----EEEE----ECSCGGGHH-HHHHTTCSE-----EECGGGCSSCHHHHHHH
T ss_pred CCEEEEECC-ChHHHHHHHHHHHhCCc----eeee----eccchHHHH-HHHHhCCCc-----ccCCccchhhhhhhHhh
Confidence 358999995 99999988887766641 2433 355556654 334332110 00000101 1
Q ss_pred cccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCC-eEEEEeCCCch
Q 019713 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN-VKVIVVGNPCN 226 (337)
Q Consensus 168 eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~-aivIvvtNPvd 226 (337)
..-.++|+||.+.|.| +.+. ..++-. .++ +.+++++.|.+
T Consensus 94 ~~~~G~d~vie~~G~~---------------~~~~---~a~~~~-~~g~G~~v~vG~~~~ 134 (174)
T d1e3ia2 94 LTAGGVDYSLDCAGTA---------------QTLK---AAVDCT-VLGWGSCTVVGAKVD 134 (174)
T ss_dssp HHTSCBSEEEESSCCH---------------HHHH---HHHHTB-CTTTCEEEECCCSSS
T ss_pred hhcCCCcEEEEecccc---------------hHHH---HHHHHh-hcCCeEEEecCCCCC
Confidence 1225899999987643 2222 223332 454 78889987754
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.13 E-value=0.75 Score=34.90 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+.|++|||| |.+|.-+|..|...|.
T Consensus 22 ~p~~~vIiG~-G~ig~E~A~~l~~lG~ 47 (122)
T d1v59a2 22 IPKRLTIIGG-GIIGLEMGSVYSRLGS 47 (122)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCCeEEEECC-CchHHHHHHHHHhhCc
Confidence 4679999995 9999999999998765
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.36 E-value=0.79 Score=36.72 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=19.0
Q ss_pred ccEEEecCcccccCCCcEEEEec
Q 019713 158 REVKIGINPYELFEDAEWALLIG 180 (337)
Q Consensus 158 ~~v~i~t~~~eal~dADvVIita 180 (337)
.++..+.+..+++++||+|....
T Consensus 58 ~~i~~~~d~~~~~~~advi~~~~ 80 (170)
T d1otha2 58 TKLLLTNDPLEAAHGGNVLITDT 80 (170)
T ss_dssp CCEEEESCHHHHHTTCSEEEECC
T ss_pred CEEEEEcCHHHHHhhhhheeeec
Confidence 46788888889999999998864
|