Citrus Sinensis ID: 019733

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAPAITTLPFGSRTRTGGLKEEK
ccccccEEEccEEEEEcccccEEEEEEEEEccccccEEEEEEcccccEEEEEcccEEEcccccEEEEEEcccccccccccccccEEEEEEEEcccccccccccHHHHHccccccEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
ccccEEEEccccccccccccEEEEEEEEEEcccccEEEEEEEcccccEEEEcccccEEcccccEEEEEEEEccccccccccccccEEEEEEEEcccccHHHHcHHHHHccccccEEHcEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHcccccccccHHcccccccccEEccccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccEEEEccccccc
maeelldiqplelKFTFEVKKQSTCVIQlgnksdqcvafkvkttspkkycvrpnvsiikpkaisdftvtmqaqrvappdlqckdkfliqgivvpfgtsdeditsdmfakdsgkyveEKKLRVIlmsppqspvllprngelkqdsspetslqkdralsgvenippgdgvaanaEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLreakdvqtfessKDIDELISAaedeqsrpaedaselkpaKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKhelmapaittlpfgsrtrtgglkeek
maeelldiqpleLKFTFEVKKQSTCViqlgnksdqcvafkvkttspkkycvrpnvsiikpkaiSDFTVTMQAQRVappdlqckdKFLIQGIVVPfgtsdeditsdMFAKDSGKYVEEKKLRVILMsppqspvllprngelkqdsspetslqkdralSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKerdesraakdvqmfgttnvtnklreakdvqtfesskDIDELISAaedeqsrpaedaselkpakDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKhelmapaittlpfgsrtrtgglkeek
MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAPAITTLPFGSRTRTGGLKEEK
*****LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFA*****YV***KLRVI*************************************************EVFETAKFAD********************************************************************************LELKLAKDFEELKLKLNV********************************************************
*AEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVIL********************************************************************************************************************************************************************************************************************
MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNG***************RALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLEN**********KDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISA**************LKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAPAITTLPFGSR**********
**EELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP**********************************************************TK**********************************************IDELI********RPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAPAITTLPFGSRTRTGGL****
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MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDASELKPAKDILELKLAKDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLMAPAITTLPFGSRTRTGGLKEEK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query336 2.2.26 [Sep-21-2011]
B9DHD7386 Vesicle-associated protei yes no 0.904 0.787 0.402 1e-55
Q9SHC8239 Vesicle-associated protei no no 0.556 0.782 0.471 8e-42
Q8VZ95256 Vesicle-associated protei no no 0.431 0.566 0.503 1e-38
Q84WW5239 Vesicle-associated protei no no 0.428 0.602 0.513 4e-37
Q9LVU1220 Vesicle-associated protei no no 0.369 0.563 0.540 7e-32
O82213149 Vesicle-associated protei no no 0.354 0.798 0.512 4e-29
Q9SYC9571 Vesicle-associated protei no no 0.449 0.264 0.424 6e-29
O60119383 Vesicle-associated membra yes no 0.455 0.399 0.325 3e-13
P40075244 Vesicle-associated membra yes no 0.360 0.495 0.362 2e-12
A2VDZ9243 Vesicle-associated membra yes no 0.288 0.399 0.404 9e-12
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1 Back     alignment and function desciption
 Score =  216 bits (551), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 144/358 (40%), Positives = 200/358 (55%), Gaps = 54/358 (15%)

Query: 1   MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
           M   LLDIQP  L+F  ++KKQ++CV+QL N +   VAFKVKTTSPKKYCVRPNV ++ P
Sbjct: 1   MNMPLLDIQPRTLQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAP 60

Query: 61  KAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKL 120
           K+  +FTV MQA +  PPD+ CKDKFLIQ   V   T+DEDIT+ MF+K  GK++EE KL
Sbjct: 61  KSTCEFTVIMQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKL 120

Query: 121 RVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPP----GDGV-------- 168
           RV L+ P  SP L P N   KQ +  E S+ KDR  S  E + P    G+ V        
Sbjct: 121 RVTLVPPSDSPELSPINTP-KQGAVFEDSILKDRLYSQSETLAPPQYEGEIVKEPRMVGH 179

Query: 169 -----AANAEVFETAKF-----------ADELTETKD------------LQWLENAKERD 200
                A NA+  +T K            A++L  TKD               + + K+ D
Sbjct: 180 DELKAADNAKELKTPKMATVDFVEDRYTANDLKATKDSYDSSRMAKETGFDPIRSHKDAD 239

Query: 201 ESRAAKDVQMFGTTNVTNKLREAKDV---QTFESSKDIDE--LISAAEDEQSRPAEDASE 255
           + RA K      TTN+   +++A D+   Q F +   +D    IS   D       D   
Sbjct: 240 DGRAIK-----ATTNLDAPMKKAMDLPRDQGFTNGIAVDSEPKISKERDVVQLQKTDGQN 294

Query: 256 LKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 313
           +   + + ELKL KD EE+KLK++ ++S+L++A+ TI KLME R ++++ +  L+HEL
Sbjct: 295 V---RGLDELKLVKDIEEMKLKVDALESKLKQADSTISKLMEERSISSQHRQSLQHEL 349
May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1 Back     alignment and function description
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1 Back     alignment and function description
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1 Back     alignment and function description
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1 Back     alignment and function description
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31 PE=3 SV=1 Back     alignment and function description
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1 Back     alignment and function description
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.05c PE=1 SV=1 Back     alignment and function description
>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCS2 PE=1 SV=3 Back     alignment and function description
>sp|A2VDZ9|VAPB_BOVIN Vesicle-associated membrane protein-associated protein B OS=Bos taurus GN=VAPB PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query336
449432791340 PREDICTED: vesicle-associated protein 2- 0.901 0.891 0.539 2e-80
359806816295 uncharacterized protein LOC100801987 [Gl 0.767 0.874 0.520 1e-78
255551631304 vesicle-associated membrane protein, put 0.767 0.848 0.515 5e-78
358248386295 uncharacterized protein LOC100794670 [Gl 0.767 0.874 0.523 5e-78
225432396293 PREDICTED: vesicle-associated protein 2- 0.758 0.870 0.548 5e-77
357478585306 Vesicle-associated membrane protein-asso 0.767 0.843 0.486 9e-73
217072786306 unknown [Medicago truncatula] 0.767 0.843 0.483 1e-71
225451130336 PREDICTED: vesicle-associated protein 2- 0.866 0.866 0.498 6e-70
255542442419 vesicle-associated membrane protein, put 0.910 0.730 0.411 3e-57
359806487278 uncharacterized protein LOC100816526 [Gl 0.711 0.859 0.441 1e-56
>gi|449432791|ref|XP_004134182.1| PREDICTED: vesicle-associated protein 2-2-like [Cucumis sativus] gi|449495402|ref|XP_004159830.1| PREDICTED: vesicle-associated protein 2-2-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 169/313 (53%), Positives = 216/313 (69%), Gaps = 10/313 (3%)

Query: 1   MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
           M  EL +IQP ELKFTFE+KKQS+C+IQL NKS+Q +AFKVKTTSPKKYCVRPN  IIKP
Sbjct: 1   MTMELFEIQPAELKFTFELKKQSSCLIQLINKSEQHIAFKVKTTSPKKYCVRPNTGIIKP 60

Query: 61  KAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKL 120
           K   DFTVTM AQR APPD+QCKDKFL+QG V+  GTS+EDITSD+FAKDSGK++EEKKL
Sbjct: 61  KNTCDFTVTMLAQRTAPPDMQCKDKFLVQGTVISPGTSEEDITSDVFAKDSGKHIEEKKL 120

Query: 121 RVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKF 180
           +V L S   +PVLLP NGELK DS+ ETS+ +DR  +GVENIPP   VA ++   +T K 
Sbjct: 121 KVFLASATPTPVLLPINGELKLDSNHETSMPRDRMQTGVENIPPPSKVAEDSNGLDTRKH 180

Query: 181 ADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELIS 240
            DEL        L         + A+ V+   T    ++   A++V T  S     E+  
Sbjct: 181 IDELRPVDTPVSLSPP-----YKVAEGVEKIDTCKDADENGAAENVPTRRS-----EVAE 230

Query: 241 AAEDEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK 300
           + E+ ++ PAE   E K +KD+ EL L KDF+ELK KL +MD++L EAE TI +L + R 
Sbjct: 231 SVENIETMPAEGIEESKLSKDLPELNLTKDFQELKSKLALMDAELLEAEATIMRLKKERT 290

Query: 301 LATREKDMLKHEL 313
           + T+E++MLK +L
Sbjct: 291 VTTQEREMLKRDL 303

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359806816|ref|NP_001241309.1| uncharacterized protein LOC100801987 [Glycine max] gi|255641982|gb|ACU21258.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255551631|ref|XP_002516861.1| vesicle-associated membrane protein, putative [Ricinus communis] gi|223543949|gb|EEF45475.1| vesicle-associated membrane protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|358248386|ref|NP_001239873.1| uncharacterized protein LOC100794670 [Glycine max] gi|255634614|gb|ACU17669.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225432396|ref|XP_002277190.1| PREDICTED: vesicle-associated protein 2-2 [Vitis vinifera] gi|297736920|emb|CBI26121.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357478585|ref|XP_003609578.1| Vesicle-associated membrane protein-associated protein SCS2 [Medicago truncatula] gi|355510633|gb|AES91775.1| Vesicle-associated membrane protein-associated protein SCS2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|217072786|gb|ACJ84753.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|225451130|ref|XP_002266266.1| PREDICTED: vesicle-associated protein 2-2 [Vitis vinifera] gi|298204983|emb|CBI34290.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255542442|ref|XP_002512284.1| vesicle-associated membrane protein, putative [Ricinus communis] gi|223548245|gb|EEF49736.1| vesicle-associated membrane protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359806487|ref|NP_001240997.1| uncharacterized protein LOC100816526 [Glycine max] gi|255635548|gb|ACU18124.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query336
TAIR|locus:2025585386 VAP27-2 "vamp/synaptobrevin-as 0.895 0.779 0.385 4.5e-43
TAIR|locus:2055557239 PVA12 "plant VAP homolog 12" [ 0.556 0.782 0.471 9.6e-41
TAIR|locus:2101766256 VAP27-1 "VAMP/SYNAPTOBREVIN-AS 0.431 0.566 0.503 4.9e-37
TAIR|locus:2126921239 AT4G00170 [Arabidopsis thalian 0.425 0.598 0.523 4.4e-36
TAIR|locus:2171594220 AT5G47180 [Arabidopsis thalian 0.369 0.563 0.540 9.2e-36
TAIR|locus:2008231 637 AT1G51270 [Arabidopsis thalian 0.479 0.252 0.416 2.7e-29
TAIR|locus:2061461149 AT2G23830 [Arabidopsis thalian 0.354 0.798 0.512 1.9e-28
SGD|S000000922244 SCS2 "Integral ER membrane pro 0.461 0.635 0.322 2e-15
POMBASE|SPBC16G5.05c383 SPBC16G5.05c "VAP family prote 0.705 0.618 0.300 6.2e-15
UNIPROTKB|Q6P7K7242 vapb "Putative uncharacterized 0.574 0.797 0.300 1.3e-14
TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 121/314 (38%), Positives = 175/314 (55%)

Query:     5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAIS 64
             LLDIQP  L+F  ++KKQ++CV+QL N +   VAFKVKTTSPKKYCVRPNV ++ PK+  
Sbjct:     5 LLDIQPRTLQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTC 64

Query:    65 DFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVIL 124
             +FTV MQA +  PPD+ CKDKFLIQ   V   T+DEDIT+ MF+K  GK++EE KLRV L
Sbjct:    65 EFTVIMQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTL 124

Query:   125 MSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENI-PP---GDGVAANAEV-FETAK 179
             + P  SP L P N   KQ +  E S+ KDR  S  E + PP   G+ V     V  +  K
Sbjct:   125 VPPSDSPELSPINTP-KQGAVFEDSILKDRLYSQSETLAPPQYEGEIVKEPRMVGHDELK 183

Query:   180 FADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDE-- 237
              AD   E K  + +      ++   A D++    +  ++++ +        S KD D+  
Sbjct:   184 AADNAKELKTPK-MATVDFVEDRYTANDLKATKDSYDSSRMAKETGFDPIRSHKDADDGR 242

Query:   238 LISAAEDEQSRPAEDASELKPAKDILELKLAKDFE-ELKLKLNVMDSQLREAEHTIRKLM 296
              I A  +  + P + A +L P        +A D E ++  + +V+  Q  + ++ +R L 
Sbjct:   243 AIKATTNLDA-PMKKAMDL-PRDQGFTNGIAVDSEPKISKERDVVQLQKTDGQN-VRGLD 299

Query:   297 EARKLATREKDMLK 310
             E + +   E+  LK
Sbjct:   300 ELKLVKDIEEMKLK 313
GO:0005198 "structural molecule activity" evidence=IEA
GO:0005789 "endoplasmic reticulum membrane" evidence=IDA
GO:0046907 "intracellular transport" evidence=TAS
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008231 AT1G51270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061461 AT2G23830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000000922 SCS2 "Integral ER membrane protein, regulates phospholipid metabolism" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
POMBASE|SPBC16G5.05c SPBC16G5.05c "VAP family protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P7K7 vapb "Putative uncharacterized protein MGC76271" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
pfam00635109 pfam00635, Motile_Sperm, MSP (Major sperm protein) 4e-26
COG5066242 COG5066, SCS2, VAMP-associated protein involved in 8e-17
>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain Back     alignment and domain information 
 Score = 99.7 bits (249), Expect = 4e-26
 Identities = 45/108 (41%), Positives = 54/108 (50%), Gaps = 2/108 (1%)

Query: 5   LLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAI 63
           LL I P   L F     KQ T  + L N SD+ VAFKVKTT+PK+Y VRPN  I+KP   
Sbjct: 1   LLTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGES 60

Query: 64  SDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDS 111
              T+T Q     P D + KDKF+IQ    P    D         K+ 
Sbjct: 61  VTITITRQPFDKEPGDPK-KDKFVIQYTEAPDDAKDAKEAFKRAWKNG 107

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109
>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 336
COG5066242 SCS2 VAMP-associated protein involved in inositol 99.92
KOG0439218 consensus VAMP-associated protein involved in inos 99.91
PF00635109 Motile_Sperm: MSP (Major sperm protein) domain; In 99.87
PF14874102 PapD-like: Flagellar-associated PapD-like 98.41
PF00345122 PapD_N: Pili and flagellar-assembly chaperone, Pap 96.15
PF14646426 MYCBPAP: MYCBP-associated protein family 92.58
PRK09918230 putative fimbrial chaperone protein; Provisional 91.0
PRK09926246 putative chaperone protein EcpD; Provisional 89.93
PF0761045 DUF1573: Protein of unknown function (DUF1573); In 88.83
PRK15249253 fimbrial chaperone protein StbB; Provisional 88.0
PRK15246233 fimbrial assembly chaperone StbE; Provisional 87.29
PF11614118 FixG_C: IG-like fold at C-terminal of FixG, putati 85.4
PRK11385236 putativi pili assembly chaperone; Provisional 83.09
PRK15295226 fimbrial assembly chaperone SthB; Provisional 81.98
PRK15299227 fimbrial chaperone protein StiB; Provisional 81.23
PRK15211229 fimbrial chaperone protein PefD; Provisional 80.53
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information 
Probab=99.92  E-value=1.8e-24  Score=198.60  Aligned_cols=121  Identities=35%  Similarity=0.615  Sum_probs=110.0

Q ss_pred             eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEEeccCcCCC-CCCCCCC
Q 019733            6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAP-PDLQCKD   84 (336)
Q Consensus         6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P-~d~k~kD   84 (336)
                      |.|+|. +.|..|+....+|.+-|.|++.++|+||||||+|+.||||||.|+|.|++++.|.|+||++++.| +|.+|+|
T Consensus         3 veisp~-~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd   81 (242)
T COG5066           3 VEISPQ-TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD   81 (242)
T ss_pred             eEecCc-eEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence            566665 45777899999999999999999999999999999999999999999999999999999999877 6899999


Q ss_pred             eEEEEEEEcCCCCCcchhhHHhhcccCCCceeEEEEEEEEeCCC
Q 019733           85 KFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP  128 (336)
Q Consensus        85 KFLVqs~~vp~g~~d~dl~~~iFkk~~k~~I~ekKLrV~fv~p~  128 (336)
                      |||||++..+.+.+-.|+. ++|....+.-|.++||+|+|....
T Consensus        82 KFLiqs~~~~~~l~g~d~a-d~wt~~sk~~i~~rkIrcvyse~~  124 (242)
T COG5066          82 KFLIQSYRFDWRLSGSDFA-DHWTSSSKKPIWTRKIRCVYSEEE  124 (242)
T ss_pred             eeEEEEeccChhhccchHH-HHHHhhccccchhhheeEEeeccc
Confidence            9999999999887778886 899999988899999999999543

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors Back     alignment and domain information
>PF14646 MYCBPAP: MYCBP-associated protein family Back     alignment and domain information
>PRK09918 putative fimbrial chaperone protein; Provisional Back     alignment and domain information
>PRK09926 putative chaperone protein EcpD; Provisional Back     alignment and domain information
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini Back     alignment and domain information
>PRK15249 fimbrial chaperone protein StbB; Provisional Back     alignment and domain information
>PRK15246 fimbrial assembly chaperone StbE; Provisional Back     alignment and domain information
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A Back     alignment and domain information
>PRK11385 putativi pili assembly chaperone; Provisional Back     alignment and domain information
>PRK15295 fimbrial assembly chaperone SthB; Provisional Back     alignment and domain information
>PRK15299 fimbrial chaperone protein StiB; Provisional Back     alignment and domain information
>PRK15211 fimbrial chaperone protein PefD; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
3ikk_A127 Crystal Structure Analysis Of Msp Domain Length = 1 1e-12
2cri_A147 Solution Structure Of The Msp Domain Of Mouse Vamp- 7e-12
2rr3_A130 Solution Structure Of The Complex Between Human Vap 8e-12
1z9o_A128 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp 2e-11
1z9l_A128 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp 7e-11
1wic_A152 Solution Structure Of The Msp Domain Of Riken Cdna 4e-05
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain Length = 127 Back     alignment and structure 
Iteration: 1

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 2   AEELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
            E++L ++P  ELKF        T  ++LGN +D+ V FKVKTT+P++YCVRPN  II  
Sbjct: 6   VEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDA 65
Query: 61  KAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSD 99
            A  + +V +Q     P + + K KF++Q +  P  TSD
Sbjct: 66  GASINVSVMLQPFDYDPNE-KSKHKFMVQSMFAPTDTSD 103
>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147 Back     alignment and structure
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130 Back     alignment and structure
>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128 Back     alignment and structure
>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp Homology Domain Length = 128 Back     alignment and structure
>pdb|1WIC|A Chain A, Solution Structure Of The Msp Domain Of Riken Cdna 6030424e15 Length = 152 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 4e-32
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 6e-32
2cri_A147 Vesicle-associated membrane protein-associated pro 2e-29
1z9l_A128 Vesicle-associated membrane protein-associated pro 4e-29
1m1s_A116 WR4; structural genomics, major sperm protein, bio 2e-24
1row_A109 SSP-19, MSP-domain protein like family member; bet 4e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126 Back     alignment and structure
 Score =  115 bits (290), Expect = 4e-32
 Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 5/124 (4%)

Query: 1   MAEELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIK 59
           +    ++ QP  ++ F      + T  I++ N   + + + +KTT+ ++  V P   ++ 
Sbjct: 4   VPPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLD 63

Query: 60  PKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKK 119
           PK      V+      A  D    D+  I+    P G   +    + F  D    V  K 
Sbjct: 64  PKEKVLMAVSCDTFNAATED-LNNDRITIEWTNTPDGA-AKQFRREWFQGD--GMVRRKN 119

Query: 120 LRVI 123
           L + 
Sbjct: 120 LPIE 123
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152 Back     alignment and structure
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147 Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116 Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query336
2cri_A147 Vesicle-associated membrane protein-associated pro 99.98
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 99.97
1z9l_A128 Vesicle-associated membrane protein-associated pro 99.97
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 99.96
1row_A109 SSP-19, MSP-domain protein like family member; bet 99.93
1m1s_A116 WR4; structural genomics, major sperm protein, bio 99.92
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 98.18
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 97.78
3qbt_B140 Inositol polyphosphate 5-phosphatase OCRL-1; prote 97.75
3qis_A366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 97.17
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 95.49
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 94.97
3q48_A257 Chaperone CUPB2; IG fold, periplasmic chaperone; 2 86.05
2co7_B221 SAFB chaperone, putative fimbriae assembly chapero 85.7
2xg5_A218 PAPD, chaperone protein PAPD; chaperone, chaperone 84.99
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 84.76
1klf_A205 FIMC chaperone, chaperone protein FIMC; adhesin-ch 81.92
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
Probab=99.98  E-value=1.6e-31  Score=230.93  Aligned_cols=125  Identities=34%  Similarity=0.574  Sum_probs=113.8

Q ss_pred             CCeEEeCC-eeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEEeccCcCCCCCCCC
Q 019733            4 ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQC   82 (336)
Q Consensus         4 ~LL~I~P~-EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~d~k~   82 (336)
                      .+|.|+|. +|.|.+++++.++|.|+|+|+++++||||||||+|++|+|||++|+|.||++++|.|+|+++...| +++|
T Consensus        13 ~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~~~p-~~~~   91 (147)
T 2cri_A           13 QILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFDYDP-NEKS   91 (147)
T ss_dssp             CCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCCCCT-TCCS
T ss_pred             CeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCcCCc-cccC
Confidence            68999996 899999999999999999999999999999999999999999999999999999999999986554 5699


Q ss_pred             CCeEEEEEEEcCCCCCcchhhHHhhcccCCCceeEEEEEEEEeCCCCCCC
Q 019733           83 KDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPV  132 (336)
Q Consensus        83 kDKFLVqs~~vp~g~~d~dl~~~iFkk~~k~~I~ekKLrV~fv~p~~s~~  132 (336)
                      +|||+||++.++++.+  ++ .++|++..+..++++||||+|+.|.+...
T Consensus        92 kDKFlVqs~~~~~~~~--d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~~~  138 (147)
T 2cri_A           92 KHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFEMPNENDK  138 (147)
T ss_dssp             CCCEEEEEEECCTTCC--CH-HHHHHHSCTTTCEEEEEEEEEECSCCSSC
T ss_pred             CCEEEEEEEEcCCCcc--cH-HHHhhcCCCCceEEEEEEEEEecCCCCcc
Confidence            9999999999987643  44 58999988889999999999998876643
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Back     alignment and structure
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B Back     alignment and structure
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 336
d1wica_152 b.1.11.2 (A:) MSP domain containing protein 2, Mos 2e-32
d1grwa_124 b.1.11.2 (A:) Major sperm protein, MSP {Nematode ( 3e-30
d1m1sa_109 b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan 7e-22
d1rowa_107 b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele 5e-21
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (290), Expect = 2e-32
 Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 4   ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKA 62
            LL I P  EL F      +   +I L N +   VAFKV+TT+P+KY V+P+ S   P A
Sbjct: 17  PLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGA 76

Query: 63  ISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKD-SGKYVEEKKLR 121
             D  V+          +  +D+FLI    +   +         F K+     V E +LR
Sbjct: 77  SIDIIVSPHGG----LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLR 132

Query: 122 VILMSPPQSP 131
              +   +  
Sbjct: 133 CHTVESSKPN 142
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124 Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109 Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query336
d1wica_152 MSP domain containing protein 2, Mospd2 {Mouse (Mu 99.96
d1grwa_124 Major sperm protein, MSP {Nematode (Caenorhabditis 99.95
d1m1sa_109 WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623 99.87
d1rowa_107 SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 99.87
d2co7b1128 Periplasmic chaperone SafB {Salmonella typhimurium 93.22
d1p5va1141 Chaperone protein Caf1m {Yersinia pestis [TaxId: 6 92.02
d3bwuc1121 Periplasmic chaperone FimC {Escherichia coli [TaxI 89.14
d2j2za1124 Pilus chaperone PapD, N-domain {Escherichia coli [ 89.05
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=8.4e-29  Score=213.76  Aligned_cols=125  Identities=29%  Similarity=0.416  Sum_probs=111.5

Q ss_pred             CCeEEeCC-eeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEEeccCcCCCCCCCC
Q 019733            4 ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQC   82 (336)
Q Consensus         4 ~LL~I~P~-EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~d~k~   82 (336)
                      +||.|+|. +|+|.+++++..+|.|+|+|.++++||||||||+|++|+|+|++|+|.||++++|.|++++..    .+.|
T Consensus        17 ~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~~~~~----~~~~   92 (152)
T d1wica_          17 PLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGL----TVSA   92 (152)
T ss_dssp             SSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSS----CCCS
T ss_pred             CeEEEcCCCCeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEECCCC----cccC
Confidence            69999996 799999999999999999999999999999999999999999999999999999999998643    4578


Q ss_pred             CCeEEEEEEEcCCCCC--cchhhHHhhcccCCCceeEEEEEEEEeCCCCCCCc
Q 019733           83 KDKFLIQGIVVPFGTS--DEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVL  133 (336)
Q Consensus        83 kDKFLVqs~~vp~g~~--d~dl~~~iFkk~~k~~I~ekKLrV~fv~p~~s~~~  133 (336)
                      +|||+|+++.++++..  ..|+. +||+...+..++++||+|+|+.+..+.++
T Consensus        93 kdKFli~~~~v~~~~~~~~~d~~-~~wk~~~~~~i~~~kLkv~~~~~~~p~s~  144 (152)
T d1wica_          93 QDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKPNSL  144 (152)
T ss_dssp             SCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSSSSS
T ss_pred             CCcEEEEEEEeCCCCCCCccCHH-HHhhcCCcCcEEEEEEEEEEeCCCCCCCc
Confidence            9999999999976543  34554 89998888899999999999999876553
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure