Citrus Sinensis ID: 019734
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 336 | 2.2.26 [Sep-21-2011] | |||||||
| Q94C27 | 351 | F-box protein At1g70590 O | yes | no | 0.991 | 0.948 | 0.612 | 1e-112 | |
| Q9ESM7 | 794 | Protein sel-1 homolog 1 O | N/A | no | 0.604 | 0.255 | 0.307 | 1e-15 | |
| Q9UBV2 | 794 | Protein sel-1 homolog 1 O | yes | no | 0.592 | 0.250 | 0.295 | 3e-15 | |
| Q80Z70 | 794 | Protein sel-1 homolog 1 O | yes | no | 0.604 | 0.255 | 0.307 | 8e-15 | |
| Q9Z2G6 | 790 | Protein sel-1 homolog 1 O | yes | no | 0.604 | 0.256 | 0.307 | 9e-15 | |
| Q9ZG88 | 974 | Localization factor PodJL | yes | no | 0.410 | 0.141 | 0.353 | 2e-11 | |
| B8GXA0 | 974 | Localization factor PodJL | yes | no | 0.410 | 0.141 | 0.353 | 2e-11 | |
| P77234 | 325 | Uncharacterized protein Y | N/A | no | 0.467 | 0.483 | 0.317 | 2e-10 | |
| Q3V172 | 688 | Protein sel-1 homolog 2 O | no | no | 0.589 | 0.287 | 0.265 | 2e-09 | |
| Q5TEA6 | 688 | Protein sel-1 homolog 2 O | no | no | 0.616 | 0.300 | 0.259 | 4e-09 |
| >sp|Q94C27|FB84_ARATH F-box protein At1g70590 OS=Arabidopsis thaliana GN=At1g70590 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 213/348 (61%), Positives = 258/348 (74%), Gaps = 15/348 (4%)
Query: 1 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELT----ASARKARIKRRSRFSCSRSIKST 56
MKQRTWP RS GSRF++L F ++R ++ A+A+ R S S S S
Sbjct: 1 MKQRTWPCRSEGSRFSSLSFLKPHDKDKRSRISSINKATAKSTTSSRSSSSSSSSRPPSN 60
Query: 57 EGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG 116
E DF+ LP+D+L KIAA F+ P L+AASLVCKSW DAL+PLRE+M+L+RWGK++KHGRG
Sbjct: 61 EFGDFSMLPYDILMKIAAPFSHPNLQAASLVCKSWRDALKPLRESMLLIRWGKKYKHGRG 120
Query: 117 -VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNL 175
VR NLDKALDSFLKGA RGSTLAMVDAGL+YWE +KE A++LYR+A+ LGD GQ NL
Sbjct: 121 GVRANLDKALDSFLKGAMRGSTLAMVDAGLVYWERGEKEKAVNLYRRASELGDAVGQCNL 180
Query: 176 GISYLQ------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 229
GI+YLQ +EA+K L Q++ G+VRAQYQLALCLH GR V NL EA +WYL+AAE
Sbjct: 181 GIAYLQVQPSNPKEAMKWLKQSAENGYVRAQYQLALCLHHGRVVQTNLLEATKWYLKAAE 240
Query: 230 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAV 289
GGYVRAMYN SLCYS GEGLP + + ARKWMKRAAD GH KAQ EHGL LF+EGEM+K+V
Sbjct: 241 GGYVRAMYNISLCYSVGEGLPQNRKLARKWMKRAADHGHSKAQFEHGLALFSEGEMLKSV 300
Query: 290 VYLELATRAGETAADHVKNVILQQLSAT----SRDRAMLVVDSWRAMP 333
+YLELA R GE AA VK V+ QQLSAT + A+ ++WR +P
Sbjct: 301 LYLELAERGGEAAATPVKEVVHQQLSATFGGQAVHHAIHQANNWRPLP 348
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ESM7|SE1L1_MESAU Protein sel-1 homolog 1 OS=Mesocricetus auratus GN=Sel1l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 107/218 (49%), Gaps = 15/218 (6%)
Query: 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGD 168
GRGV +N +A D F A G++ AM G MY E E A+ +++AA +G+
Sbjct: 387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGN 446
Query: 169 PAGQFNLGISYLQEEAVKLLY--------QASIAGHVRAQYQLALCLHRGRGVDFNLQEA 220
P GQ LG++YL +++ Y +A+ G V Q QL + G GV + ++A
Sbjct: 447 PVGQSGLGMAYLYGRGIQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQA 506
Query: 221 ARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLF 280
+++ A++GG++ A YN + ++ G G+ S A + K + G +L +
Sbjct: 507 LKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSY 566
Query: 281 TEGEMMKAVV-YLELATRAGETAADHVKNVILQQLSAT 317
+G+ AVV YL LA + E A + IL Q AT
Sbjct: 567 KDGDYNAAVVQYLLLAEQGYEVAQSNAA-FILDQREAT 603
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May play a role in Notch signaling. May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins. Mesocricetus auratus (taxid: 10036) |
| >sp|Q9UBV2|SE1L1_HUMAN Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3 | Back alignment and function description |
|---|
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 105/213 (49%), Gaps = 14/213 (6%)
Query: 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGD 168
GRGV +N +A D F A G++ AM G MY E E A+ +++AA +G+
Sbjct: 387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGN 446
Query: 169 PAGQFNLGISYLQEEAVKLLY--------QASIAGHVRAQYQLALCLHRGRGVDFNLQEA 220
P GQ LG++YL V++ Y +A+ G V Q QL + G GV + ++A
Sbjct: 447 PVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQA 506
Query: 221 ARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLF 280
+++ A++GG++ A YN + ++ G G+ S A + K + G +L +
Sbjct: 507 LKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSY 566
Query: 281 TEGEMMKAVV-YLELATRAGETAADHVKNVILQ 312
+G+ AV+ YL LA + E A + ++ Q
Sbjct: 567 KDGDYNAAVIQYLLLAEQGYEVAQSNAAFILDQ 599
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May play a role in Notch signaling (By similarity). May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins. Homo sapiens (taxid: 9606) |
| >sp|Q80Z70|SE1L1_RAT Protein sel-1 homolog 1 OS=Rattus norvegicus GN=Sel1l PE=2 SV=2 | Back alignment and function description |
|---|
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 106/218 (48%), Gaps = 15/218 (6%)
Query: 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGD 168
GRGV +N +A D F A G++ AM G MY E E A+ +++AA +G+
Sbjct: 387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGN 446
Query: 169 PAGQFNLGISYLQEEAVKLLY--------QASIAGHVRAQYQLALCLHRGRGVDFNLQEA 220
P GQ LG++YL V++ Y +A+ G V Q QL + G GV + ++A
Sbjct: 447 PVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQA 506
Query: 221 ARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLF 280
+++ A++GG++ A YN + ++ G G+ S A + K + G +L +
Sbjct: 507 LKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSY 566
Query: 281 TEGEMMKAVV-YLELATRAGETAADHVKNVILQQLSAT 317
+ + AVV YL LA + E A + IL Q AT
Sbjct: 567 KDDDYNAAVVQYLLLAEQGYEVAQSNAA-FILDQREAT 603
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May play a role in Notch signaling. May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins. Rattus norvegicus (taxid: 10116) |
| >sp|Q9Z2G6|SE1L1_MOUSE Protein sel-1 homolog 1 OS=Mus musculus GN=Sel1l PE=2 SV=2 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 106/218 (48%), Gaps = 15/218 (6%)
Query: 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGD 168
GRGV +N +A D F A G++ AM G MY E E A+ +++AA +G+
Sbjct: 383 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGN 442
Query: 169 PAGQFNLGISYLQEEAVKLLY--------QASIAGHVRAQYQLALCLHRGRGVDFNLQEA 220
P GQ LG++YL V++ Y +A+ G V Q QL + G GV + ++A
Sbjct: 443 PVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQA 502
Query: 221 ARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLF 280
+++ A++GG++ A YN + ++ G G+ S A + K + G +L +
Sbjct: 503 LKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSY 562
Query: 281 TEGEMMKAVV-YLELATRAGETAADHVKNVILQQLSAT 317
+ + AVV YL LA + E A + IL Q AT
Sbjct: 563 KDEDYNAAVVQYLLLAEQGYEVAQSNAA-FILDQREAT 599
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May play a role in Notch signaling. May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins. Mus musculus (taxid: 10090) |
| >sp|Q9ZG88|PODJ_CAUCR Localization factor PodJL OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=podJ PE=1 SV=2 | Back alignment and function description |
|---|
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 12/150 (8%)
Query: 185 VKLLYQASIAGHVRAQYQLALCLHRGR-GVDFNLQEAARWYLRAAEGGYVRAMYNTSLCY 243
V+LL +A+ G+ AQ+ L+ G+ GV ++ EA RW RAA GG RAM+N +L Y
Sbjct: 745 VELLKRAANGGYPAAQFYLSKMYEGGKNGVKVDMAEARRWSERAANGGDPRAMHNLALYY 804
Query: 244 SFGEGLPLSHRQARKWMKRAADCGHGKAQL------EHGLGLFTEGEMMKAVVYLELATR 297
GEG P + A W ++AAD G +Q E GLG+ +A + +A R
Sbjct: 805 FKGEGGPRNSTTAASWFRKAADMGLVDSQFNLAQLYESGLGVSQ--NPAEAYKWYVIAGR 862
Query: 298 AGETAADHVKNVILQQLSATSR---DRAML 324
AG++ A + QL+A ++ DR+ L
Sbjct: 863 AGDSTARGRATALRSQLTAEAQQTADRSAL 892
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PodJL provides the positional information for the localization of several polar organelles (pili, adhesive holdfast and chemotactic apparatus) by recruiting structural (CpaE) and regulatory (PleC) proteins to a specific cell pole. Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650) |
| >sp|B8GXA0|PODJ_CAUCN Localization factor PodJL OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=podJ PE=2 SV=1 | Back alignment and function description |
|---|
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 12/150 (8%)
Query: 185 VKLLYQASIAGHVRAQYQLALCLHRGR-GVDFNLQEAARWYLRAAEGGYVRAMYNTSLCY 243
V+LL +A+ G+ AQ+ L+ G+ GV ++ EA RW RAA GG RAM+N +L Y
Sbjct: 745 VELLKRAANGGYPAAQFYLSKMYEGGKNGVKVDMAEARRWSERAANGGDPRAMHNLALYY 804
Query: 244 SFGEGLPLSHRQARKWMKRAADCGHGKAQL------EHGLGLFTEGEMMKAVVYLELATR 297
GEG P + A W ++AAD G +Q E GLG+ +A + +A R
Sbjct: 805 FKGEGGPRNSTTAASWFRKAADMGLVDSQFNLAQLYESGLGVSQ--NPAEAYKWYVIAGR 862
Query: 298 AGETAADHVKNVILQQLSATSR---DRAML 324
AG++ A + QL+A ++ DR+ L
Sbjct: 863 AGDSTARGRATALRSQLTAEAQQTADRSAL 892
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PodJL provides the positional information for the localization of several polar organelles (pili, adhesive holdfast and chemotactic apparatus) by recruiting structural (CpaE) and regulatory (PleC) proteins to a specific cell pole. Caulobacter crescentus (strain NA1000 / CB15N) (taxid: 565050) |
| >sp|P77234|YBEQ_ECOLI Uncharacterized protein YbeQ OS=Escherichia coli (strain K12) GN=ybeQ PE=4 SV=2 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 16/173 (9%)
Query: 108 GKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEA-----AISLYRQ 162
G+++ + K+ ++A+ K A +G T A G W +D+ EA A+ Y+
Sbjct: 69 GQKYTEDKSRHKDNEQAIFWLKKAALQGHTFASNALG---WTLDRGEAPNYKEAVVWYQI 125
Query: 163 AAVLGDPAGQFNLGISYLQEEAVKLLY--------QASIAGHVRAQYQLALCLHRGRGVD 214
AA G Q NLG Y V Y QA++ GH AQ LA G+GV
Sbjct: 126 AAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYKQAALQGHSDAQNNLADLYEDGKGVA 185
Query: 215 FNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG 267
N AA WYL++A+ G A + + Y+ GEG+ ++QA W +AA G
Sbjct: 186 QNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGEGVDQDYKQAMYWYLKAAAQG 238
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Escherichia coli (strain K12) (taxid: 83333) |
| >sp|Q3V172|SE1L2_MOUSE Protein sel-1 homolog 2 OS=Mus musculus GN=Sel1l2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 13/211 (6%)
Query: 115 RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD-----KKEAAISLYRQAAVLGDP 169
+G+ ++ KAL FLK A GS AM G MY+E + A + AA G+
Sbjct: 312 KGLDQDYSKALYYFLKAAKAGSANAMAFIGKMYFEGNAAAPQNNATAFKYFSMAASKGNA 371
Query: 170 AGQFNLGISYLQE--------EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 221
G LG+ Y EA+K +A+ G AQ+QL + G GV + + A
Sbjct: 372 IGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKGWPNAQFQLGFMYYSGSGVWKDYKLAF 431
Query: 222 RWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT 281
+++ A++ G A+Y + Y+ G G+ S R A + K + GH + +
Sbjct: 432 KYFYLASQSGQPLAIYYLAEMYATGTGVLRSCRTAVELYKGVCELGHWAEKFLTAYFAYK 491
Query: 282 EGEMMKAVVYLELATRAGETAADHVKNVILQ 312
+G++ +++ L G A IL+
Sbjct: 492 DGDIDSSLIQYALLAEMGYEVAQSNSAFILE 522
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Mus musculus (taxid: 10090) |
| >sp|Q5TEA6|SE1L2_HUMAN Protein sel-1 homolog 2 OS=Homo sapiens GN=SEL1L2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 94/220 (42%), Gaps = 13/220 (5%)
Query: 115 RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD-----KKEAAISLYRQAAVLGDP 169
+G+ ++ KAL FLK A GS AM G MY E + A + AA G+
Sbjct: 312 KGLDQDYYKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQNNATAFKYFSMAASKGNA 371
Query: 170 AGQFNLGISYLQ--------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 221
G LG+ Y EA+K +A+ G AQ+QL + G G+ + + A
Sbjct: 372 IGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKGWPDAQFQLGFMYYSGSGIWKDYKLAF 431
Query: 222 RWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT 281
+++ A++ G A+Y + Y+ G G+ S R A + K + GH + +
Sbjct: 432 KYFYLASQSGQPLAIYYLAKMYATGTGVVRSCRTAVELYKGVCELGHWAEKFLTAYFAYK 491
Query: 282 EGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDR 321
+G++ ++V L G A IL+ A ++
Sbjct: 492 DGDIDSSLVQYALLAEMGYEVAQSNSAFILESKKANILEK 531
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Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 336 | ||||||
| 225470583 | 335 | PREDICTED: F-box protein At1g70590 [Viti | 0.967 | 0.970 | 0.705 | 1e-132 | |
| 255574005 | 329 | conserved hypothetical protein [Ricinus | 0.958 | 0.978 | 0.702 | 1e-130 | |
| 224110896 | 334 | predicted protein [Populus trichocarpa] | 0.967 | 0.973 | 0.700 | 1e-128 | |
| 224102439 | 317 | predicted protein [Populus trichocarpa] | 0.922 | 0.977 | 0.654 | 1e-120 | |
| 449450432 | 368 | PREDICTED: F-box protein At1g70590-like | 1.0 | 0.913 | 0.608 | 1e-117 | |
| 297838865 | 345 | F-box family protein [Arabidopsis lyrata | 0.994 | 0.968 | 0.647 | 1e-115 | |
| 356497357 | 327 | PREDICTED: F-box protein At1g70590-like | 0.946 | 0.972 | 0.628 | 1e-110 | |
| 18409624 | 351 | F-box protein [Arabidopsis thaliana] gi| | 0.991 | 0.948 | 0.612 | 1e-110 | |
| 356501969 | 327 | PREDICTED: F-box protein At1g70590-like | 0.851 | 0.874 | 0.675 | 1e-106 | |
| 147779938 | 943 | hypothetical protein VITISV_023688 [Viti | 0.708 | 0.252 | 0.672 | 1e-100 |
| >gi|225470583|ref|XP_002273705.1| PREDICTED: F-box protein At1g70590 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust.
Identities = 244/346 (70%), Positives = 275/346 (79%), Gaps = 21/346 (6%)
Query: 1 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTASARKARIKRRSRFSCSRSI---KSTE 57
MKQRTWP +S GSRFTAL+ + S +K + RS+ S +I S E
Sbjct: 1 MKQRTWPVKSEGSRFTALRL-----------YSGSGKKEETRLRSKRYSSITIPFRSSRE 49
Query: 58 GHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG- 116
DF+ LP D+L KIAA+FTLP L+ ASLVC+SW D+LRPLREAM+LL+WGKRFKHG G
Sbjct: 50 ETDFSKLPDDILQKIAATFTLPDLQTASLVCRSWRDSLRPLREAMLLLKWGKRFKHGHGG 109
Query: 117 VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLG 176
VR N+ KALDSFLKGAARGSTLAMVDAGL+YWEM KKE +I+LYR+AA LGDP Q NLG
Sbjct: 110 VRPNIQKALDSFLKGAARGSTLAMVDAGLIYWEMGKKEESIALYRKAAELGDPTAQCNLG 169
Query: 177 ISYLQ------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 230
ISYL EEA K LY +S AG+VRAQYQLALCLHRGRG+D NL EAARWYL+AAEG
Sbjct: 170 ISYLHSEPPKREEAAKWLYLSSNAGYVRAQYQLALCLHRGRGMDRNLPEAARWYLKAAEG 229
Query: 231 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVV 290
GYVRAMYN SLCYS+GEGL SHRQAR+WMKRAAD GH KAQ EHGLGLF+EGEMMKAVV
Sbjct: 230 GYVRAMYNVSLCYSYGEGLVHSHRQARRWMKRAADRGHSKAQFEHGLGLFSEGEMMKAVV 289
Query: 291 YLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 336
YLELATRAGETAA HVKNVILQQLS TSRDRAML+ D+WRA+P+ H
Sbjct: 290 YLELATRAGETAAAHVKNVILQQLSVTSRDRAMLLADNWRALPTSH 335
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574005|ref|XP_002527920.1| conserved hypothetical protein [Ricinus communis] gi|223532695|gb|EEF34477.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 241/343 (70%), Positives = 269/343 (78%), Gaps = 21/343 (6%)
Query: 1 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTASARKARIKRRSRFSCSRSIKSTEGHD 60
MKQRTWP RS GS+F +L P T +++ I +S S S +G D
Sbjct: 1 MKQRTWPSRSDGSKFKSLPLPYT-----------ISKREIIPSKSVISFS---VPKDGRD 46
Query: 61 FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG-VRK 119
F++LPFD+L KIAASFTLP L+ ASLVC+SW D LRPLREAMV L+WGKRFKHGRG VR
Sbjct: 47 FSTLPFDILIKIAASFTLPNLQTASLVCRSWRDGLRPLREAMVFLKWGKRFKHGRGGVRP 106
Query: 120 NLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISY 179
NL KALDSFLKG A GS LAMVDAGL+YWEM K+ AI+LY +AA LGDPAGQ NLGI Y
Sbjct: 107 NLQKALDSFLKGVALGSPLAMVDAGLVYWEMGFKDKAIALYLKAAELGDPAGQCNLGIYY 166
Query: 180 LQ------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV 233
+Q +EA+K L QAS AGHVRAQYQLALCLH+GRGVD NLQEAA+WYL+AA GGYV
Sbjct: 167 VQVEPPKPKEAIKWLLQASNAGHVRAQYQLALCLHQGRGVDHNLQEAAKWYLKAAAGGYV 226
Query: 234 RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLE 293
RAMYN +LCYS GEGL S+RQARKWMKRAAD GH KAQ EHGLGLF+EGEMMKAVVYLE
Sbjct: 227 RAMYNVALCYSVGEGLAQSYRQARKWMKRAADRGHSKAQFEHGLGLFSEGEMMKAVVYLE 286
Query: 294 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 336
LATRAGETAA HVKNVILQQLS TSRDR ML+ DSWRA+PS H
Sbjct: 287 LATRAGETAAAHVKNVILQQLSTTSRDRVMLLADSWRALPSSH 329
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110896|ref|XP_002315673.1| predicted protein [Populus trichocarpa] gi|222864713|gb|EEF01844.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 239/341 (70%), Positives = 274/341 (80%), Gaps = 16/341 (4%)
Query: 1 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTASARKARIKRRSRFSCSRSIKSTEGHD 60
MKQ TWP RS GSRF +L PI + + S K+ K S SR I+S++G D
Sbjct: 1 MKQSTWPGRSDGSRFKSL--PI------KHQFHQSEFKSTSKFWSASLASRQIRSSDG-D 51
Query: 61 FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG-VRK 119
F+ LPFD+L KIAASFTLP L+AASLVCKSW++ LRPLREAM+ L+WGKRFKHGRG VR
Sbjct: 52 FSKLPFDILTKIAASFTLPNLQAASLVCKSWSEGLRPLREAMLFLKWGKRFKHGRGGVRP 111
Query: 120 NLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISY 179
NL KAL+SFLKGAARGSTLAMVDAGL+YWE+ K+ AI+LY +AA LGD +GQ NLG++Y
Sbjct: 112 NLSKALESFLKGAARGSTLAMVDAGLLYWEIGDKDKAIALYEKAAKLGDRSGQCNLGLAY 171
Query: 180 LQ------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV 233
LQ +EAVK L+QAS +GHVRAQYQ ALCLH+G GV+ NLQEAARWYL+AAEGGYV
Sbjct: 172 LQAEPSKRKEAVKWLFQASKSGHVRAQYQFALCLHQGSGVNCNLQEAARWYLKAAEGGYV 231
Query: 234 RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLE 293
RAMYN +LCYS GEGL SHR ARKWMKRAAD GH KAQ EHGLGLF+EGE +KAVVYLE
Sbjct: 232 RAMYNVALCYSVGEGLAQSHRLARKWMKRAADRGHSKAQFEHGLGLFSEGEQLKAVVYLE 291
Query: 294 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334
LATRAGETAA HVKNVILQQLSATSRDR M + D+WRA+PS
Sbjct: 292 LATRAGETAAAHVKNVILQQLSATSRDRVMNLADNWRALPS 332
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224102439|ref|XP_002312677.1| predicted protein [Populus trichocarpa] gi|222852497|gb|EEE90044.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/342 (65%), Positives = 265/342 (77%), Gaps = 32/342 (9%)
Query: 1 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTASARKARIKRRSRFSCSRSIKSTEGHD 60
MKQ+TWP R R + +F ++ + + R ++S++G D
Sbjct: 1 MKQKTWPGRQY--RQSTFKFWLSSEAD----------------------FRQLRSSDG-D 35
Query: 61 FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR-GVRK 119
F++LP D+L KIAASFTLP L+ ASLVCKSW++ LRPLREA++ L+WGKRFKHGR GVR
Sbjct: 36 FSTLPSDILTKIAASFTLPHLQTASLVCKSWSEGLRPLREALLFLKWGKRFKHGRGGVRP 95
Query: 120 NLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISY 179
NLDKALDSFLKGA RGSTLAMVDAGL+YWE+ KK+ AI+LY++AAVLGDP+GQ NLG+SY
Sbjct: 96 NLDKALDSFLKGAVRGSTLAMVDAGLLYWEIGKKDKAIALYKKAAVLGDPSGQCNLGLSY 155
Query: 180 LQ------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV 233
LQ +EAVK L+QAS +GHVRAQYQLALCLH+G G D +L EAARWYL+AAEGGYV
Sbjct: 156 LQAEPSKRKEAVKWLFQASKSGHVRAQYQLALCLHQGCGFDRHLHEAARWYLKAAEGGYV 215
Query: 234 RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLE 293
RAMY +LCYS GEGL SHRQARKWMKRAAD GH AQ EHGLGLF+EGE +KAVVYLE
Sbjct: 216 RAMYRVALCYSVGEGLAQSHRQARKWMKRAADRGHSNAQYEHGLGLFSEGEKLKAVVYLE 275
Query: 294 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335
LAT AGETAA HVKNVILQQL ATSRD M + ++WRA+PSL
Sbjct: 276 LATHAGETAAVHVKNVILQQLPATSRDHVMNLANNWRALPSL 317
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450432|ref|XP_004142966.1| PREDICTED: F-box protein At1g70590-like isoform 1 [Cucumis sativus] gi|449500305|ref|XP_004161061.1| PREDICTED: LOW QUALITY PROTEIN: F-box protein At1g70590-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust.
Identities = 224/368 (60%), Positives = 261/368 (70%), Gaps = 32/368 (8%)
Query: 1 MKQRTWPDRSTGSRFTALQFP------ITEKDNRRPELTA---SARKARIKRRSRFSCSR 51
M QRTWPDRS S F++ D+ L A S + + F+ +
Sbjct: 1 MWQRTWPDRSDASPFSSFSLSKLKAKSAIHMDDHHHNLDAYHTSRHTLSTSKSTNFTPTV 60
Query: 52 SI----------------KSTEGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDAL 95
S HDF++LP+DVL KIAASF LP LRAAS VCK+W DA
Sbjct: 61 HPSPSTSSSSQTPFWVRPSSLPSHDFSALPYDVLIKIAASFNLPNLRAASFVCKAWFDAF 120
Query: 96 RPLREAMVLLRWGKRFKHGRG-VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKE 154
RPLREAM+ LRWGKRFKHGRG VR N DKAL+SFLKGAARGSTLAMVDAGL+YWEM K
Sbjct: 121 RPLREAMLFLRWGKRFKHGRGGVRPNSDKALNSFLKGAARGSTLAMVDAGLLYWEMGNKN 180
Query: 155 AAISLYRQAAVLGDPAGQFNLGISYLQ------EEAVKLLYQASIAGHVRAQYQLALCLH 208
AI+LY++AA LGDP+ + NLGIS+L EAVK L QAS+ G++RAQYQLALCL
Sbjct: 181 DAIALYQKAADLGDPSAKCNLGISFLHAKPPNPTEAVKWLRQASVVGNIRAQYQLALCLQ 240
Query: 209 RGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 268
+G GVD N+QEAARW+++AAEGGYVRAMYN SLCYS GEGL +H+QA+KWMKRAAD GH
Sbjct: 241 QGHGVDRNVQEAARWFIKAAEGGYVRAMYNLSLCYSCGEGLVHNHQQAKKWMKRAADRGH 300
Query: 269 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDS 328
KAQ EHGL LF+E +MMKAVVYLELATR+GE AA HVKNVILQQLS +SRDR M V D+
Sbjct: 301 CKAQFEHGLHLFSERDMMKAVVYLELATRSGERAAGHVKNVILQQLSQSSRDRVMSVADN 360
Query: 329 WRAMPSLH 336
WR +PS H
Sbjct: 361 WRPLPSSH 368
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297838865|ref|XP_002887314.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297333155|gb|EFH63573.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/343 (64%), Positives = 262/343 (76%), Gaps = 9/343 (2%)
Query: 1 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTASAR-KARIKRRSRFSCSRSIKSTE-G 58
MKQRTWP RS GSRFT+L F ++ +R ++ R A+ SR S S S S E G
Sbjct: 1 MKQRTWPCRSEGSRFTSLSFLKPQEKEKRTRFSSINRATAKSSTSSRSSSSSSPLSNEIG 60
Query: 59 HDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG-V 117
DF+ LPFD+L KIAA F+ P L+AAS VCKSW DAL+PLRE+M+LLRWGK+FKHGRG V
Sbjct: 61 GDFSMLPFDILMKIAAPFSHPNLQAASSVCKSWRDALKPLRESMLLLRWGKKFKHGRGGV 120
Query: 118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGI 177
R NLDKALDSFLKGAARGSTLAMVDAGL+YWE +KE A+SLYR+AA LGD GQ NLGI
Sbjct: 121 RANLDKALDSFLKGAARGSTLAMVDAGLVYWETGEKEKAMSLYRRAAELGDAVGQCNLGI 180
Query: 178 SYLQ------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 231
YLQ +EA+K L Q++ G+VRAQYQLALCLH+GR V NL EA++WYL+AAEGG
Sbjct: 181 CYLQVQPSNPKEAMKWLKQSAENGYVRAQYQLALCLHQGRVVKTNLLEASKWYLKAAEGG 240
Query: 232 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVY 291
YVRAMYN SLCYS GEGLP + + ARKWMKRAAD GH KAQ EHGL LF+EG M+K+V+Y
Sbjct: 241 YVRAMYNISLCYSVGEGLPQNRKLARKWMKRAADHGHSKAQFEHGLALFSEGAMLKSVLY 300
Query: 292 LELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334
LELA R GE+AA H+K VI QQLSATSR + +WR +P+
Sbjct: 301 LELAERGGESAATHIKEVIHQQLSATSRGHVINQASNWRPLPA 343
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497357|ref|XP_003517527.1| PREDICTED: F-box protein At1g70590-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 215/342 (62%), Positives = 255/342 (74%), Gaps = 24/342 (7%)
Query: 1 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTASARKARIKRRSRFSCSRSIKSTEGHD 60
MK RTWP F++L + + R E +A AR R+ R + G +
Sbjct: 1 MKHRTWP-----RAFSSLPY------SNRSEFSA-ARSTRLCARPPPPSPPGV----GGE 44
Query: 61 FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR-GVRK 119
F+SLP+DVL KIAASF P LRAASLVC++W +ALRPLREAMVLLRWGKRFKHGR GVR
Sbjct: 45 FSSLPYDVLAKIAASFDDPNLRAASLVCRAWCEALRPLREAMVLLRWGKRFKHGRRGVRP 104
Query: 120 NLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISY 179
N+DKALDSF K A RGS LAMVDAGL+YWE +K A+ LY +AA LG+P+ Q NLG+SY
Sbjct: 105 NVDKALDSFTKAAVRGSALAMVDAGLIYWERGEKPKAMELYLKAAELGNPSAQCNLGLSY 164
Query: 180 LQ------EEAVKLLYQASIAGHVRAQYQLALCLHRGRG-VDFNLQEAARWYLRAAEGGY 232
LQ E+AVK L +AS+ G+VRAQYQLALCLHR G V NL+EAA+WY++AAEGGY
Sbjct: 165 LQAEPPNTEKAVKWLRKASVCGNVRAQYQLALCLHRSGGRVRSNLKEAAKWYMKAAEGGY 224
Query: 233 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYL 292
VRAMYN SLC+SFGEGL +H+ ARKWMKRAAD GH KAQ EHGL LF+EG+MMKAVVYL
Sbjct: 225 VRAMYNISLCFSFGEGLASNHQLARKWMKRAADRGHSKAQFEHGLALFSEGDMMKAVVYL 284
Query: 293 ELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334
ELATRAGE A HVKN +L +LS+ SRD AM + +SWRA+PS
Sbjct: 285 ELATRAGEKGAAHVKNAVLHRLSSVSRDHAMHLANSWRALPS 326
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18409624|ref|NP_564992.1| F-box protein [Arabidopsis thaliana] gi|75165183|sp|Q94C27.1|FB84_ARATH RecName: Full=F-box protein At1g70590 gi|14335050|gb|AAK59789.1| At1g70590/F5A18_23 [Arabidopsis thaliana] gi|27363348|gb|AAO11593.1| At1g70590/F5A18_23 [Arabidopsis thaliana] gi|332196965|gb|AEE35086.1| F-box protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 213/348 (61%), Positives = 258/348 (74%), Gaps = 15/348 (4%)
Query: 1 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELT----ASARKARIKRRSRFSCSRSIKST 56
MKQRTWP RS GSRF++L F ++R ++ A+A+ R S S S S
Sbjct: 1 MKQRTWPCRSEGSRFSSLSFLKPHDKDKRSRISSINKATAKSTTSSRSSSSSSSSRPPSN 60
Query: 57 EGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG 116
E DF+ LP+D+L KIAA F+ P L+AASLVCKSW DAL+PLRE+M+L+RWGK++KHGRG
Sbjct: 61 EFGDFSMLPYDILMKIAAPFSHPNLQAASLVCKSWRDALKPLRESMLLIRWGKKYKHGRG 120
Query: 117 -VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNL 175
VR NLDKALDSFLKGA RGSTLAMVDAGL+YWE +KE A++LYR+A+ LGD GQ NL
Sbjct: 121 GVRANLDKALDSFLKGAMRGSTLAMVDAGLVYWERGEKEKAVNLYRRASELGDAVGQCNL 180
Query: 176 GISYLQ------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 229
GI+YLQ +EA+K L Q++ G+VRAQYQLALCLH GR V NL EA +WYL+AAE
Sbjct: 181 GIAYLQVQPSNPKEAMKWLKQSAENGYVRAQYQLALCLHHGRVVQTNLLEATKWYLKAAE 240
Query: 230 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAV 289
GGYVRAMYN SLCYS GEGLP + + ARKWMKRAAD GH KAQ EHGL LF+EGEM+K+V
Sbjct: 241 GGYVRAMYNISLCYSVGEGLPQNRKLARKWMKRAADHGHSKAQFEHGLALFSEGEMLKSV 300
Query: 290 VYLELATRAGETAADHVKNVILQQLSAT----SRDRAMLVVDSWRAMP 333
+YLELA R GE AA VK V+ QQLSAT + A+ ++WR +P
Sbjct: 301 LYLELAERGGEAAATPVKEVVHQQLSATFGGQAVHHAIHQANNWRPLP 348
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501969|ref|XP_003519795.1| PREDICTED: F-box protein At1g70590-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 200/296 (67%), Positives = 236/296 (79%), Gaps = 10/296 (3%)
Query: 49 CSRS-IKSTEGH-DFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLR 106
C+R + S G DF++LP+DVL KIAASF P LRAASLVC++W +ALRPLREAM LL
Sbjct: 31 CARPPLPSPPGAGDFSALPYDVLAKIAASFDDPNLRAASLVCRAWCEALRPLREAMALLL 90
Query: 107 WGKRFKHG-RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV 165
WGKRFKHG RGV N D+ALDSF+K AARGS LAMVDAGL+YWE +K A+ Y +AA
Sbjct: 91 WGKRFKHGHRGVGPNPDRALDSFIKAAARGSALAMVDAGLIYWERGEKPKAMEFYHKAAE 150
Query: 166 LGDPAGQFNLGISYLQEE------AVKLLYQASIAGHVRAQYQLALCLHRGRG-VDFNLQ 218
LG+P+ Q NLG+SYLQ E AVK L++AS+ G+VRAQYQLALCLHRG G V NL+
Sbjct: 151 LGNPSAQCNLGLSYLQAEPPNTELAVKWLHKASVCGNVRAQYQLALCLHRGGGRVRSNLK 210
Query: 219 EAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLG 278
EAA+WY++AAEGGYVRAMYN SLC+SFGEGL +H+ ARKWMKRAAD GH KAQ EHGL
Sbjct: 211 EAAKWYMKAAEGGYVRAMYNISLCFSFGEGLTRNHQLARKWMKRAADRGHSKAQFEHGLA 270
Query: 279 LFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334
LF+EG+MMKAVVYLELATRAGE A HVKN +L +LS+ SRD AM + +SWRA+PS
Sbjct: 271 LFSEGDMMKAVVYLELATRAGEKGAAHVKNAVLHRLSSASRDHAMHLANSWRALPS 326
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147779938|emb|CAN62303.1| hypothetical protein VITISV_023688 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/287 (67%), Positives = 212/287 (73%), Gaps = 49/287 (17%)
Query: 71 KIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG-VRKNLDKALDSFL 129
KIAA+FTLP L+ ASLVC+SW D+LRPLREAM+LL+WGKRFKHG G VR N+ KALDSFL
Sbjct: 46 KIAATFTLPDLQTASLVCRSWRDSLRPLREAMLLLKWGKRFKHGHGGVRPNIQKALDSFL 105
Query: 130 KGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ------EE 183
KGAARGSTLAMVDAGL+YWEM KKE +++LYR+AA LGDP Q NLGISYL EE
Sbjct: 106 KGAARGSTLAMVDAGLIYWEMGKKEESVALYRKAAELGDPTAQCNLGISYLHSEPPKREE 165
Query: 184 AVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA----------------------- 220
A K LY +S AG+VRAQYQLALCLHRGRG+D NL EA
Sbjct: 166 AAKWLYLSSNAGYVRAQYQLALCLHRGRGMDRNLPEAPTIVKGFREWEYEMWGDNHCTKP 225
Query: 221 -------------------ARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMK 261
ARWYL+AAEGGYVRAMYN SLCYS+GEGL SHRQAR+WMK
Sbjct: 226 CSPFVDAIHLVLYLSSPRQARWYLKAAEGGYVRAMYNVSLCYSYGEGLVHSHRQARRWMK 285
Query: 262 RAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKN 308
RAAD GH KAQ EHGLGLF+EGEMMKAVVYLELATRAGETAA HVKN
Sbjct: 286 RAADRGHSKAQFEHGLGLFSEGEMMKAVVYLELATRAGETAAAHVKN 332
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 336 | ||||||
| TAIR|locus:2026774 | 351 | AT1G70590 "AT1G70590" [Arabido | 0.991 | 0.948 | 0.603 | 6e-103 | |
| UNIPROTKB|Q748V7 | 245 | GSU2894 "SEL1 repeat-containin | 0.547 | 0.751 | 0.371 | 4.8e-23 | |
| TIGR_CMR|GSU_2894 | 245 | GSU_2894 "conserved hypothetic | 0.547 | 0.751 | 0.371 | 4.8e-23 | |
| UNIPROTKB|Q481Z1 | 235 | CPS_2411 "Conserved domain pro | 0.526 | 0.753 | 0.328 | 5.1e-19 | |
| TIGR_CMR|CPS_2411 | 235 | CPS_2411 "conserved domain pro | 0.526 | 0.753 | 0.328 | 5.1e-19 | |
| UNIPROTKB|E1C6X2 | 791 | SEL1L "Uncharacterized protein | 0.622 | 0.264 | 0.311 | 1.9e-16 | |
| UNIPROTKB|F1PVX5 | 794 | SEL1L "Uncharacterized protein | 0.622 | 0.263 | 0.311 | 1.9e-16 | |
| UNIPROTKB|F1MGJ5 | 840 | SEL1L "Uncharacterized protein | 0.622 | 0.248 | 0.311 | 2.1e-16 | |
| UNIPROTKB|Q9UBV2 | 794 | SEL1L "Protein sel-1 homolog 1 | 0.622 | 0.263 | 0.306 | 7.2e-16 | |
| UNIPROTKB|G3V9D3 | 793 | Sel1l "Sel1 (Suppressor of lin | 0.622 | 0.263 | 0.311 | 1.3e-15 |
| TAIR|locus:2026774 AT1G70590 "AT1G70590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
Identities = 210/348 (60%), Positives = 253/348 (72%)
Query: 1 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTXXXXXXXXXXXXXFSCSRSIKS----T 56
MKQRTWP RS GSRF++L F ++R ++ S S S S
Sbjct: 1 MKQRTWPCRSEGSRFSSLSFLKPHDKDKRSRISSINKATAKSTTSSRSSSSSSSSRPPSN 60
Query: 57 EGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG 116
E DF+ LP+D+L KIAA F+ P L+AASLVCKSW DAL+PLRE+M+L+RWGK++KHGRG
Sbjct: 61 EFGDFSMLPYDILMKIAAPFSHPNLQAASLVCKSWRDALKPLRESMLLIRWGKKYKHGRG 120
Query: 117 -VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNL 175
VR NLDKALDSFLKGA RGSTLAMVDAGL+YWE +KE A++LYR+A+ LGD GQ NL
Sbjct: 121 GVRANLDKALDSFLKGAMRGSTLAMVDAGLVYWERGEKEKAVNLYRRASELGDAVGQCNL 180
Query: 176 GISYLQ------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 229
GI+YLQ +EA+K L Q++ G+VRAQYQLALCLH GR V NL EA +WYL+AAE
Sbjct: 181 GIAYLQVQPSNPKEAMKWLKQSAENGYVRAQYQLALCLHHGRVVQTNLLEATKWYLKAAE 240
Query: 230 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAV 289
GGYVRAMYN SLCYS GEGLP + + ARKWMKRAAD GH KAQ EHGL LF+EGEM+K+V
Sbjct: 241 GGYVRAMYNISLCYSVGEGLPQNRKLARKWMKRAADHGHSKAQFEHGLALFSEGEMLKSV 300
Query: 290 VYLELATRAGETAADHVKNVILQQLSAT----SRDRAMLVVDSWRAMP 333
+YLELA R GE AA VK V+ QQLSAT + A+ ++WR +P
Sbjct: 301 LYLELAERGGEAAATPVKEVVHQQLSATFGGQAVHHAIHQANNWRPLP 348
|
|
| UNIPROTKB|Q748V7 GSU2894 "SEL1 repeat-containing protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 74/199 (37%), Positives = 105/199 (52%)
Query: 91 WNDALRPLRE---AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMY 147
+ ALR RE A R G + +G GV +N +AL + K A G A G MY
Sbjct: 41 YETALREYREDGGAQACYRIGTLYDNGFGVPENKQEALKWYHKAADLGLDQAQHRIGEMY 100
Query: 148 WE----MDKKEAAISLYRQAAVLGDPAGQFNLGISYL------QEEA--VKLLYQASIAG 195
+ A+S Y +AA G QF +G Y Q+ A VK L QA+ G
Sbjct: 101 DNGRGVEENPVTALSWYLKAAEQGMAIAQFKVGDMYYTGKGVKQDVALGVKWLQQAAKMG 160
Query: 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQ 255
++RAQY++A GR + ++ EAA+WYLRAAE G+ RA Y +L + GEG+ +
Sbjct: 161 NIRAQYEIATMYETGRELKKDISEAAKWYLRAAEQGHSRAQYTIALLFLKGEGVRQDRAE 220
Query: 256 ARKWMKRAADCGHGKAQLE 274
A KW+++AA+ GH KAQ++
Sbjct: 221 AVKWLRKAAEGGHTKAQMD 239
|
|
| TIGR_CMR|GSU_2894 GSU_2894 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 74/199 (37%), Positives = 105/199 (52%)
Query: 91 WNDALRPLRE---AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMY 147
+ ALR RE A R G + +G GV +N +AL + K A G A G MY
Sbjct: 41 YETALREYREDGGAQACYRIGTLYDNGFGVPENKQEALKWYHKAADLGLDQAQHRIGEMY 100
Query: 148 WE----MDKKEAAISLYRQAAVLGDPAGQFNLGISYL------QEEA--VKLLYQASIAG 195
+ A+S Y +AA G QF +G Y Q+ A VK L QA+ G
Sbjct: 101 DNGRGVEENPVTALSWYLKAAEQGMAIAQFKVGDMYYTGKGVKQDVALGVKWLQQAAKMG 160
Query: 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQ 255
++RAQY++A GR + ++ EAA+WYLRAAE G+ RA Y +L + GEG+ +
Sbjct: 161 NIRAQYEIATMYETGRELKKDISEAAKWYLRAAEQGHSRAQYTIALLFLKGEGVRQDRAE 220
Query: 256 ARKWMKRAADCGHGKAQLE 274
A KW+++AA+ GH KAQ++
Sbjct: 221 AVKWLRKAAEGGHTKAQMD 239
|
|
| UNIPROTKB|Q481Z1 CPS_2411 "Conserved domain protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 63/192 (32%), Positives = 98/192 (51%)
Query: 111 FKHGRGVRKNLD--KALDSFLKGAARGSTLAMVDAGLMYWEMD--KKE--AAISLYRQAA 164
F G+ KN + +A+ F K A +GS A G MY + K++ A+ YR+AA
Sbjct: 22 FDKGKEAYKNNNYPQAITLFNKAAGQGSAKAQSYLGYMYTKGKGVKQDYTKAVDWYRKAA 81
Query: 165 VLGDPAGQFNLGISYLQEEAVKLLYQASIAGHVRA--------QYQLALCLHRGRGVDFN 216
G+ Q++L I Y + V Y +I H +A QY LAL + G+GV +
Sbjct: 82 EQGNARDQYSLAIIYEKGRGVAQDYNQAIEWHTKAAEQGNPRSQYHLALIYYNGKGVTQD 141
Query: 217 LQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHG 276
++A +WY +AAE G Y+ + Y G+G+ ++QA W +AA+ G KAQ G
Sbjct: 142 YKQALKWYSKAAEDGNAGVQYSLGVMYENGQGVAQDYKQAFDWYSKAAEQGDAKAQYNLG 201
Query: 277 LGLFTEGEMMKA 288
L L+ +G+ + A
Sbjct: 202 L-LYADGKGITA 212
|
|
| TIGR_CMR|CPS_2411 CPS_2411 "conserved domain protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 63/192 (32%), Positives = 98/192 (51%)
Query: 111 FKHGRGVRKNLD--KALDSFLKGAARGSTLAMVDAGLMYWEMD--KKE--AAISLYRQAA 164
F G+ KN + +A+ F K A +GS A G MY + K++ A+ YR+AA
Sbjct: 22 FDKGKEAYKNNNYPQAITLFNKAAGQGSAKAQSYLGYMYTKGKGVKQDYTKAVDWYRKAA 81
Query: 165 VLGDPAGQFNLGISYLQEEAVKLLYQASIAGHVRA--------QYQLALCLHRGRGVDFN 216
G+ Q++L I Y + V Y +I H +A QY LAL + G+GV +
Sbjct: 82 EQGNARDQYSLAIIYEKGRGVAQDYNQAIEWHTKAAEQGNPRSQYHLALIYYNGKGVTQD 141
Query: 217 LQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHG 276
++A +WY +AAE G Y+ + Y G+G+ ++QA W +AA+ G KAQ G
Sbjct: 142 YKQALKWYSKAAEDGNAGVQYSLGVMYENGQGVAQDYKQAFDWYSKAAEQGDAKAQYNLG 201
Query: 277 LGLFTEGEMMKA 288
L L+ +G+ + A
Sbjct: 202 L-LYADGKGITA 212
|
|
| UNIPROTKB|E1C6X2 SEL1L "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 226 (84.6 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 70/225 (31%), Positives = 112/225 (49%)
Query: 108 GKRFKHG-RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-MD----KKEAAISLYR 161
G+ HG RGV +N +A + F + A G++ AM G MY E D E A+ ++
Sbjct: 378 GQLHLHGGRGVEQNHQRAFEYFNQAANAGNSHAMAFLGKMYSEGSDVVPQNNETALQYFK 437
Query: 162 QAAVLGDPAGQFNLGISYLQ--------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGV 213
+AA +G+P GQ LG++YL E A+K +A+ G V Q QL + G GV
Sbjct: 438 KAADMGNPVGQSGLGMAYLYGRGVPVNYELALKYFQKAAEQGWVDGQLQLGSMYYNGIGV 497
Query: 214 DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL 273
+ ++A +++ A++GG++ A YN + ++ G G+ S A + K + G +L
Sbjct: 498 KRDYKQALKYFNLASQGGHILAFYNLAQMHATGTGVMRSCHTAVELFKNVCERGRWSERL 557
Query: 274 EHGLGLFTEGEMMKAVV-YLELATRAGETAADHVKNVILQQLSAT 317
+ +G+ AVV YL LA + E A + IL Q A+
Sbjct: 558 MTAYNSYKDGDSNSAVVQYLLLAEQGYEVAQSNAA-FILDQKEAS 601
|
|
| UNIPROTKB|F1PVX5 SEL1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 226 (84.6 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 70/225 (31%), Positives = 111/225 (49%)
Query: 108 GKRFKHG-RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-MD----KKEAAISLYR 161
G+ HG RGV +N +A D F A G++ AM G MY E D E A+ ++
Sbjct: 380 GQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFK 439
Query: 162 QAAVLGDPAGQFNLGISYLQEEAVKLLY--------QASIAGHVRAQYQLALCLHRGRGV 213
+AA +G+P GQ LG++YL V++ Y +A+ G V Q QL + G GV
Sbjct: 440 KAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGV 499
Query: 214 DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL 273
+ ++A +++ A++GG++ A YN + ++ G G+ S A + K + G +L
Sbjct: 500 KRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERL 559
Query: 274 EHGLGLFTEGEMMKAVV-YLELATRAGETAADHVKNVILQQLSAT 317
+ +G+ AV+ YL LA + E A + IL Q AT
Sbjct: 560 MTAYNSYKDGDYNAAVIQYLLLAEQGYEVAQSNAA-FILDQREAT 603
|
|
| UNIPROTKB|F1MGJ5 SEL1L "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 226 (84.6 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 70/225 (31%), Positives = 111/225 (49%)
Query: 108 GKRFKHG-RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-MD----KKEAAISLYR 161
G+ HG RGV +N +A D F A G++ AM G MY E D E A+ ++
Sbjct: 426 GQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFK 485
Query: 162 QAAVLGDPAGQFNLGISYLQEEAVKLLY--------QASIAGHVRAQYQLALCLHRGRGV 213
+AA +G+P GQ LG++YL V++ Y +A+ G V Q QL + G GV
Sbjct: 486 KAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGV 545
Query: 214 DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL 273
+ ++A +++ A++GG++ A YN + ++ G G+ S A + K + G +L
Sbjct: 546 KRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERL 605
Query: 274 EHGLGLFTEGEMMKAVV-YLELATRAGETAADHVKNVILQQLSAT 317
+ +G+ AV+ YL LA + E A + IL Q AT
Sbjct: 606 MTAYSSYKDGDSNAAVIQYLLLAEQGYEVAQSNAA-FILDQREAT 649
|
|
| UNIPROTKB|Q9UBV2 SEL1L "Protein sel-1 homolog 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 7.2e-16, P = 7.2e-16
Identities = 69/225 (30%), Positives = 111/225 (49%)
Query: 108 GKRFKHG-RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-MD----KKEAAISLYR 161
G+ HG RGV +N +A D F A G++ AM G MY E D E A+ ++
Sbjct: 380 GQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFK 439
Query: 162 QAAVLGDPAGQFNLGISYLQEEAVKLLY--------QASIAGHVRAQYQLALCLHRGRGV 213
+AA +G+P GQ LG++YL V++ Y +A+ G V Q QL + G GV
Sbjct: 440 KAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGV 499
Query: 214 DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL 273
+ ++A +++ A++GG++ A YN + ++ G G+ S A + K + G +L
Sbjct: 500 KRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERL 559
Query: 274 EHGLGLFTEGEMMKAVV-YLELATRAGETAADHVKNVILQQLSAT 317
+ +G+ AV+ YL LA + E A + IL Q A+
Sbjct: 560 MTAYNSYKDGDYNAAVIQYLLLAEQGYEVAQSNAA-FILDQREAS 603
|
|
| UNIPROTKB|G3V9D3 Sel1l "Sel1 (Suppressor of lin-12) 1 homolog (C. elegans), isoform CRA_a" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 220 (82.5 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 70/225 (31%), Positives = 110/225 (48%)
Query: 108 GKRFKHG-RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-MD----KKEAAISLYR 161
G+ HG RGV +N +A D F A G++ AM G MY E D E A+ ++
Sbjct: 379 GQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFK 438
Query: 162 QAAVLGDPAGQFNLGISYLQEEAVKLLY--------QASIAGHVRAQYQLALCLHRGRGV 213
+AA +G+P GQ LG++YL V++ Y +A+ G V Q QL + G GV
Sbjct: 439 KAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGV 498
Query: 214 DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL 273
+ ++A +++ A++GG++ A YN + ++ G G+ S A + K + G +L
Sbjct: 499 KRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERL 558
Query: 274 EHGLGLFTEGEMMKAVV-YLELATRAGETAADHVKNVILQQLSAT 317
+ + + AVV YL LA + E A + IL Q AT
Sbjct: 559 MTAYNSYKDDDYNAAVVQYLLLAEQGYEVAQSNAA-FILDQREAT 602
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94C27 | FB84_ARATH | No assigned EC number | 0.6120 | 0.9910 | 0.9487 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 336 | |||
| COG0790 | 292 | COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily | 2e-24 | |
| COG0790 | 292 | COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily | 1e-20 | |
| COG0790 | 292 | COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily | 1e-13 | |
| COG0790 | 292 | COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily | 1e-08 | |
| smart00671 | 36 | smart00671, SEL1, Sel1-like repeats | 2e-06 | |
| pfam08238 | 38 | pfam08238, Sel1, Sel1 repeat | 2e-05 | |
| smart00671 | 36 | smart00671, SEL1, Sel1-like repeats | 7e-05 | |
| pfam00646 | 48 | pfam00646, F-box, F-box domain | 0.001 | |
| pfam08238 | 38 | pfam08238, Sel1, Sel1 repeat | 0.002 | |
| smart00256 | 41 | smart00256, FBOX, A Receptor for Ubiquitination Ta | 0.002 | |
| pfam12937 | 47 | pfam12937, F-box-like, F-box-like | 0.004 |
| >gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-24
Identities = 60/202 (29%), Positives = 85/202 (42%), Gaps = 19/202 (9%)
Query: 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMY----WEMDKKEAAISLYRQAAVLGDP 169
G + KAL S+ K A G A+ G MY K A YR AA G
Sbjct: 50 GSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA 109
Query: 170 AGQFNLGISYLQ--------EEAVKLLYQASIAGH---VRAQYQLALCLHRG---RGVDF 215
FNLG+ Y +A+K +A+ G+ A Y+L L G V +
Sbjct: 110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY 169
Query: 216 NLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEH 275
+ ++A Y +AAE G A Y G G+P ++A +W K+AA+ G G A
Sbjct: 170 DDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNL 229
Query: 276 GLGLFTEGEMMKAVVYLELATR 297
GL ++ GE +K +L A
Sbjct: 230 GL-MYLNGEGVKKAAFLTAAKE 250
|
Length = 292 |
| >gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.1 bits (223), Expect = 1e-20
Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 28/193 (14%)
Query: 108 GKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDK----KEAAISLYRQA 163
G+ + G+GV ++ KA D + AA G A+ + GLMY A+ Y +A
Sbjct: 80 GQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKA 139
Query: 164 AVLGDP--------------AGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHR 209
A LG+ +G L ++Y ++A+ L +A+ G+ AQ L +
Sbjct: 140 AKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEK 199
Query: 210 GRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSH----------RQARKW 259
G GV +L++A RWY +AAE G A YN L Y GEG+ + +QA +W
Sbjct: 200 GLGVPRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEW 259
Query: 260 MKRAADCGHGKAQ 272
+++A + G A
Sbjct: 260 LQKACELGFDNAC 272
|
Length = 292 |
| >gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.7 bits (170), Expect = 1e-13
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 4/156 (2%)
Query: 152 KKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGR 211
+ + Y +A+K +A+ G A L G+
Sbjct: 30 EGGDPLMAAVALKSALLNGAGSAYPPDY--AKALKSYEKAAELGDAAALALLGQMYGAGK 87
Query: 212 GVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKA 271
GV + +AA WY AA G A++N L Y+ G G+PL +A K+ ++AA G+ +A
Sbjct: 88 GVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA 147
Query: 272 QL-EHGLGL-FTEGEMMKAVVYLELATRAGETAADH 305
L + LGL + G AV Y + A
Sbjct: 148 ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAE 183
|
Length = 292 |
| >gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.1 bits (132), Expect = 1e-08
Identities = 31/147 (21%), Positives = 49/147 (33%), Gaps = 12/147 (8%)
Query: 169 PAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDF--------NLQEA 220
P L L A + L + + + +A
Sbjct: 1 PLFALLLSGKSLFAAAEENAVSTLGKLLSEGGDPLMAAVALKSALLNGAGSAYPPDYAKA 60
Query: 221 ARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGL--- 277
+ Y +AAE G A+ Y G+G+ +A W + AA G +A GL
Sbjct: 61 LKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYA 120
Query: 278 -GLFTEGEMMKAVVYLELATRAGETAA 303
G +++KA+ Y E A + G A
Sbjct: 121 NGRGVPLDLVKALKYYEKAAKLGNVEA 147
|
Length = 292 |
| >gnl|CDD|214772 smart00671, SEL1, Sel1-like repeats | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 197 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY 232
AQY L G GV +L++A +Y +AAE G
Sbjct: 1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
|
These represent a subfamily of TPR (tetratricopeptide repeat) sequences. Length = 36 |
| >gnl|CDD|219757 pfam08238, Sel1, Sel1 repeat | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-05
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 197 VRAQYQLA--LCLHRGRGVDFNLQEAARWYLRAAEGGY 232
AQY L G GV + ++A WY +AAE G
Sbjct: 1 AEAQYNLGLYYMYLNGLGVPKDYEKALEWYRKAAEQGN 38
|
This short repeat is found in the Sel1 protein. It is related to TPR repeats. Length = 38 |
| >gnl|CDD|214772 smart00671, SEL1, Sel1-like repeats | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 7e-05
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 233 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 268
A YN Y +G G+P +A ++ K+AA+ G+
Sbjct: 1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
|
These represent a subfamily of TPR (tetratricopeptide repeat) sequences. Length = 36 |
| >gnl|CDD|201368 pfam00646, F-box, F-box domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 61 FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALR 96
LP D+L +I + L SLV K W +
Sbjct: 3 LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVD 38
|
This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48 |
| >gnl|CDD|219757 pfam08238, Sel1, Sel1 repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (81), Expect = 0.002
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 233 VRAMYN--TSLCYSFGEGLPLSHRQARKWMKRAADCGH 268
A YN Y G G+P + +A +W ++AA+ G+
Sbjct: 1 AEAQYNLGLYYMYLNGLGVPKDYEKALEWYRKAAEQGN 38
|
This short repeat is found in the Sel1 protein. It is related to TPR repeats. Length = 38 |
| >gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.002
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALR 96
LP ++L +I + L V + W +
Sbjct: 1 LPDEILEEILSKLDPKDLLRLRKVSRKWRSLID 33
|
Length = 41 |
| >gnl|CDD|221867 pfam12937, F-box-like, F-box-like | Back alignment and domain information |
|---|
Score = 34.4 bits (80), Expect = 0.004
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 61 FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDA 94
+ LP ++L +I + L +LVC+ W +
Sbjct: 1 LSDLPDEILLQIFSYLDPRDLLRLALVCRRWREL 34
|
This is an F-box-like family. Length = 47 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 336 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 99.88 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 99.88 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 99.87 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.79 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.78 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.75 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.75 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.75 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.75 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.72 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.71 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.7 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.7 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.69 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.69 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.69 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.67 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.67 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.66 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.65 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.64 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 99.63 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.63 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.63 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.62 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.6 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 99.59 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.59 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.56 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.55 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.55 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.54 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.52 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.51 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.51 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.48 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.46 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.45 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.41 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.38 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.35 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.35 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.35 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.35 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.27 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.27 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.26 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.26 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.25 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.25 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.25 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.23 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.21 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.2 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.2 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.17 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.15 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.14 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.14 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.13 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.12 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.1 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.1 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.09 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.08 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.07 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.03 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.02 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.01 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.99 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.96 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.96 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.93 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.93 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.89 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.88 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.86 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.86 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.85 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.85 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.81 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.8 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.79 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.78 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.77 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.77 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.75 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.75 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.74 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.74 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.71 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.71 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.71 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.68 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.68 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.68 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.67 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.67 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.65 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.64 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.64 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.6 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.57 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.57 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.55 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.55 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.48 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.45 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.45 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.44 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.42 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.41 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.4 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.39 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.38 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.37 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.37 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.36 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.34 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.34 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.33 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.32 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.31 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.3 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.3 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.29 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.29 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.28 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.27 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.26 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.26 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.25 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.25 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.22 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.21 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.2 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.2 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.19 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.19 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.18 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.18 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.17 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.15 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.14 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.11 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.11 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.11 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.09 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.06 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.03 | |
| smart00671 | 36 | SEL1 Sel1-like repeats. These represent a subfamil | 98.02 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.02 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.97 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.97 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.92 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.91 | |
| PF08238 | 39 | Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r | 97.9 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.88 | |
| smart00671 | 36 | SEL1 Sel1-like repeats. These represent a subfamil | 97.85 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.83 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.83 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.83 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.81 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.81 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.81 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 97.8 | |
| PF08238 | 39 | Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r | 97.79 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.78 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.75 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.74 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.7 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.7 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.66 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.65 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.65 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.64 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.63 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.63 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.63 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.61 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.61 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.55 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.52 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.5 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.5 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 97.49 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.48 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.43 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.4 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.38 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.27 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.23 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 97.23 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.19 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.19 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.16 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.15 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.09 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.09 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.07 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.07 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.06 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.04 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.04 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.02 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.97 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 96.88 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.79 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.79 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.69 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.63 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.57 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.57 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.5 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.24 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.11 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.07 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.0 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 95.91 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.9 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.79 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.61 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 95.38 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.27 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.23 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.02 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.86 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 94.8 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.69 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 94.49 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 94.43 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.4 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.34 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.27 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.23 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 94.18 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 94.01 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.66 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 93.65 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.65 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 93.51 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 93.3 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 93.29 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.27 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 93.2 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.11 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.65 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.54 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 92.49 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.29 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 92.13 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.95 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 91.87 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 91.84 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.81 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.7 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.59 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 90.95 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 90.9 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 90.57 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.55 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 90.53 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.1 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.77 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 89.75 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 89.68 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 89.27 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.2 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 89.16 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 88.79 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 88.12 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 87.95 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.91 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 87.66 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 87.41 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 86.75 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 86.63 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 86.45 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 86.38 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 86.32 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 86.2 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 85.69 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 84.99 | |
| cd02680 | 75 | MIT_calpain7_2 MIT: domain contained within Microt | 84.98 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 84.74 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.62 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 84.39 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 84.19 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 83.77 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 83.68 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 83.5 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 83.49 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 83.28 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 83.22 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 83.07 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 82.9 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 82.58 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 82.51 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 81.08 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 81.04 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=197.81 Aligned_cols=244 Identities=19% Similarity=0.167 Sum_probs=170.5
Q ss_pred CChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHH
Q 019734 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKE 154 (336)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~ 154 (336)
..|+...|+..|.+..+..|. ..+|+++||.+|.. .+.+++|+.+|.+|+.+ +++.++.+||-+|++.|+.+
T Consensus 230 ~~Gei~~aiq~y~eAvkldP~--f~dAYiNLGnV~ke----~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ld 303 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLDPN--FLDAYINLGNVYKE----ARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLD 303 (966)
T ss_pred hcchHHHHHHHHHHhhcCCCc--chHHHhhHHHHHHH----HhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHH
Confidence 345555555444444444444 56677777777766 46677777777777665 46666777777777777777
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 019734 155 AAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 226 (336)
Q Consensus 155 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~ 226 (336)
-||..|+++++. +.++|+.+||.++.+ .+|+.+|.+++.. .++++++|||.+|.+ .+.+++|..+|++
T Consensus 304 lAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E----~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 304 LAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE----QGKIEEATRLYLK 379 (966)
T ss_pred HHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hccchHHHHHHHH
Confidence 777777777654 677888888888777 7888888888765 577888888888877 6778888888888
Q ss_pred HHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHH
Q 019734 227 AAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 302 (336)
Q Consensus 227 a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 302 (336)
+++ ++...++.+||.+|.. .| ++++|+.+|+.++.. ..++++.|+|..|.+.|+...|+.+|.+|+...+.-
T Consensus 380 al~v~p~~aaa~nNLa~i~kq-qg---nl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~ 455 (966)
T KOG4626|consen 380 ALEVFPEFAAAHNNLASIYKQ-QG---NLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF 455 (966)
T ss_pred HHhhChhhhhhhhhHHHHHHh-cc---cHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH
Confidence 765 4677778888888854 33 788888888888765 346677888888888888888888888888776654
Q ss_pred HHHHHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 303 ADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 303 a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
|+...+....+-..+.+..|+.-.++.+++-|
T Consensus 456 AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 456 AEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 44433334444556677777777777666655
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=198.23 Aligned_cols=244 Identities=18% Similarity=0.096 Sum_probs=168.2
Q ss_pred ChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHH
Q 019734 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEA 155 (336)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~ 155 (336)
.|++.+|...|.+.++..|. .+-+|-+||-++.. .|+.-.|+.+|++|+.+ ..++|+++||.+|.+.+.+++
T Consensus 197 ~Grl~ea~~cYlkAi~~qp~--fAiawsnLg~~f~~----~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQPC--FAIAWSNLGCVFNA----QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred hcccchhHHHHHHHHhhCCc--eeeeehhcchHHhh----cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 45566666666666666553 56666666666655 46777777777777766 356777777777777777777
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 019734 156 AISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 227 (336)
Q Consensus 156 A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a 227 (336)
|+..|.+|+.. +++.++-+||-+|.+ +.||..|+++++. ..++|+.|||..+.. .|+.++|+.+|++|
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd----~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD----KGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh----ccchHHHHHHHHHH
Confidence 77777777654 566777777777766 7777777777664 577778888877776 67777888888777
Q ss_pred HH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHH
Q 019734 228 AE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 303 (336)
Q Consensus 228 ~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a 303 (336)
+. ..+++++++||.+|.. ...+++|..+|+++++- +...++.|||.+|..+|++++|+.+|++|++..+.-|
T Consensus 347 L~l~p~hadam~NLgni~~E----~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA 422 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYRE----QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA 422 (966)
T ss_pred HHhCCccHHHHHHHHHHHHH----hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH
Confidence 54 3677778888877754 22777788888877764 5567777888878778888888888888877766544
Q ss_pred HHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 304 DHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
..+.+.....-..++.+.|.......+..+|+
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt 454 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPT 454 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence 44444433444455666677777777666664
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-21 Score=182.49 Aligned_cols=242 Identities=28% Similarity=0.336 Sum_probs=209.3
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhcC-CCCcCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHhcCC-----CH
Q 019734 87 VCKSWNDALRPLREAMVLLRWGKRFKHG-RGVRKNLDKALDSFLKGAA-------RGSTLAMVDAGLMYWEMD-----KK 153 (336)
Q Consensus 87 ~~~~~~~~~~~~~~~~a~~~lg~~~~~g-~g~~~~~~~A~~~~~~A~~-------~~~~~a~~~lg~~~~~~~-----~~ 153 (336)
.+..|++..++.++..+++.+|.+|..| .|+.+|+++|+.||+.++. .+++.+.+.+|.+|..+. |.
T Consensus 230 ~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~ 309 (552)
T KOG1550|consen 230 EAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDY 309 (552)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccH
Confidence 3468888888899999999999999999 8999999999999999998 789999999999999873 78
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 019734 154 EAAISLYRQAAVLGDPAGQFNLGISYLQ-------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 226 (336)
Q Consensus 154 ~~A~~~~~~a~~~~~~~a~~~Lg~~~~~-------~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~ 226 (336)
+.|+.+|.++++.|++.+++.||.+|.. .+|.+||..|+..|+..|++.++.||..|.|+..+..+|+.||++
T Consensus 310 ~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~ 389 (552)
T KOG1550|consen 310 EKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKK 389 (552)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHH
Confidence 8999999999999999999999999988 599999999999999999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHcCCC---------------------------------------CcccHHHHHHHHHHHHHcC
Q 019734 227 AAEGGYVRAMYNTSLCYSFGEG---------------------------------------LPLSHRQARKWMKRAADCG 267 (336)
Q Consensus 227 a~~~~~~~a~~~lg~~~~~~~g---------------------------------------~~~~~~~A~~~~~~a~~~~ 267 (336)
+++.+.+.|++.++.++..+.+ +..+...+...+.++..+|
T Consensus 390 aA~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g 469 (552)
T KOG1550|consen 390 AAEKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG 469 (552)
T ss_pred HHHccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc
Confidence 9999999999999888876642 1225556666666666677
Q ss_pred CHHHHHHHHHHhhcc----CCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhc-HHHHHHHHHHh
Q 019734 268 HGKAQLEHGLGLFTE----GEMMKAVVYLELATRAGETAADHVKNVILQQLSATS-RDRAMLVVDSW 329 (336)
Q Consensus 268 ~~~a~~~lg~~~~~~----~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~~~~~ 329 (336)
++.+...||.+|+.- .+++.|..+|.+|...+ ..+..+++.+.++...-. ...|+...++.
T Consensus 470 ~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~ 535 (552)
T KOG1550|consen 470 NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEGIKVLHLAKRYYDQA 535 (552)
T ss_pred CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcCcchhHHHHHHHHHH
Confidence 778888999877663 48999999999999999 999999999988875543 34444444433
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=167.52 Aligned_cols=200 Identities=29% Similarity=0.391 Sum_probs=135.3
Q ss_pred CCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C
Q 019734 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEM----D 151 (336)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~----~ 151 (336)
+..+++..+ ..+++..+..+++.+++.+|.+|..|.|+.+|..+|+.||+.+++.+++.+++.||.+|..+ .
T Consensus 52 ~~~~~~~~a----~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKA----LKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHH----HHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCccc
Confidence 455666666 46666666667788999999999999999999999999999999999999999999999885 3
Q ss_pred CHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CCCccCHHHHHHHHH
Q 019734 152 KKEAAISLYRQAAVLGDPAG---QFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRG---RGVDFNLQEAARWYL 225 (336)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~a---~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g---~g~~~~~~~A~~~~~ 225 (336)
|..+|..||.+|++.|++.+ ++.||.+| ..| .++..+...|+.+|.
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~----------------------------~~g~~~~~~~~~~~~A~~~~~ 179 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAY----------------------------LSGLQALAVAYDDKKALYLYR 179 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHH----------------------------HcChhhhcccHHHHhHHHHHH
Confidence 77777777777777776666 55555544 444 344445555555555
Q ss_pred HHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhccC---------------CHHHHHH
Q 019734 226 RAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEG---------------EMMKAVV 290 (336)
Q Consensus 226 ~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~---------------~~~~A~~ 290 (336)
++++.+++.+++.||.+|..|.|+++|.++|..||++|++.|+..++++++ +++..| +...|..
T Consensus 180 ~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~ 258 (292)
T COG0790 180 KAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALE 258 (292)
T ss_pred HHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHH
Confidence 555555555555555555555555555555555555555555555555555 333322 6666666
Q ss_pred HHHHHHHcCcHHHHHHHH
Q 019734 291 YLELATRAGETAADHVKN 308 (336)
Q Consensus 291 ~~~~A~~~~~~~a~~~~~ 308 (336)
|+.++...+...++..+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 259 WLQKACELGFDNACEALR 276 (292)
T ss_pred HHHHHHHcCChhHHHHHH
Confidence 666666666666655554
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7e-20 Score=163.72 Aligned_cols=172 Identities=28% Similarity=0.346 Sum_probs=144.7
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q 019734 115 RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEM----DKKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLLYQ 190 (336)
Q Consensus 115 ~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~----~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~A~~~~~k 190 (336)
....+++..|+.+++++...+++.+++.++.+|..+ .+. .+|+.||++
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~----------------------------~~A~~~~~~ 102 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDK----------------------------TKAADWYRC 102 (292)
T ss_pred ccccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccH----------------------------HHHHHHHHH
Confidence 345678888888888888777777777777777665 233 445566666
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHcC---CCCcccHHHHHHHHHHHH
Q 019734 191 ASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRA---MYNTSLCYSFG---EGLPLSHRQARKWMKRAA 264 (336)
Q Consensus 191 a~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a---~~~lg~~~~~~---~g~~~~~~~A~~~~~~a~ 264 (336)
+++.+++.++++||.+|..|.||.+|..+|..||++|++.|+..+ ++.+|.+|..| .++..+..+|..+|+++.
T Consensus 103 ~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa 182 (292)
T COG0790 103 AAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAA 182 (292)
T ss_pred HhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHH
Confidence 667777777778888888999999999999999999999999999 99999999999 788888899999999999
Q ss_pred HcCCHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhc
Q 019734 265 DCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVKNVILQQL 314 (336)
Q Consensus 265 ~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~ 314 (336)
..+++.++++||.+|.. ..|+.+|+.||++|.+.|+..++..++.+....
T Consensus 183 ~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~~~~~~g 236 (292)
T COG0790 183 ELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNG 236 (292)
T ss_pred HhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 99999999999998866 349999999999999999988898888555444
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-19 Score=169.50 Aligned_cols=235 Identities=26% Similarity=0.330 Sum_probs=203.4
Q ss_pred hhHHhhhHHHHH-HHHHhCCCCCHHHHHHHH------HHHhcCCCCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 019734 79 PQLRAASLVCKS-WNDALRPLREAMVLLRWG------KRFKHGRGVRKN----LDKALDSFLKGAARGSTLAMVDAGLMY 147 (336)
Q Consensus 79 ~~~~~a~~~~~~-~~~~~~~~~~~~a~~~lg------~~~~~g~g~~~~----~~~A~~~~~~A~~~~~~~a~~~lg~~~ 147 (336)
+.++.....+.. .++..+......+.+.+| .++..|.+...+ ...|+.||+.+++.++..+.+.+|.+|
T Consensus 175 ~~v~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y 254 (552)
T KOG1550|consen 175 GGVRRSEEKALSKHYNKAASSTSSDATFSLGPNAQRLQLSLEGEGNERNESGELSEAFKYYREAAKLGHSEAQYALGICY 254 (552)
T ss_pred CCccchhhHhhhhhhhhccCccccccccCCCcchhhhhccccccCcccccchhhhHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 334444444445 666666656666666667 777777776666 789999999999999999999999999
Q ss_pred hcC-----CCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 019734 148 WEM-----DKKEAAISLYRQAAV-------LGDPAGQFNLGISYLQ---------EEAVKLLYQASIAGHVRAQYQLALC 206 (336)
Q Consensus 148 ~~~-----~~~~~A~~~~~~a~~-------~~~~~a~~~Lg~~~~~---------~~A~~~~~ka~~~~~~~a~~~lg~~ 206 (336)
..+ +|++.|+.+|+.++. .+++.+.+.||.+|.. ++|+.+|.++++.+++++++.||.+
T Consensus 255 ~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~ 334 (552)
T KOG1550|consen 255 LAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVL 334 (552)
T ss_pred hhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 987 599999999999988 7899999999999998 6799999999999999999999999
Q ss_pred HhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cCCH
Q 019734 207 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT-EGEM 285 (336)
Q Consensus 207 ~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~-~~~~ 285 (336)
|..|. ..+|+.+|.+||..|+..|+..|+++++.||..|.|++++..+|..||+++++.+++.+.+.++.++.- .+.+
T Consensus 335 ~~~g~-~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~~~~ 413 (552)
T KOG1550|consen 335 YETGT-KERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGVGRY 413 (552)
T ss_pred HHcCC-ccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHccccc
Confidence 99986 458999999999999999999999999999999999999999999999999999999999999886654 3899
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHhhc
Q 019734 286 MKAVVYLELATRAGETAADHVKNVILQQL 314 (336)
Q Consensus 286 ~~A~~~~~~A~~~~~~~a~~~~~~~~~~~ 314 (336)
+.+..++......+.+.+..+...+....
T Consensus 414 ~~~~~~~~~~a~~g~~~~q~~a~~l~~~~ 442 (552)
T KOG1550|consen 414 DTALALYLYLAELGYEVAQSNAAYLLDQS 442 (552)
T ss_pred cHHHHHHHHHHHhhhhHHhhHHHHHHHhc
Confidence 99999999998888888877776666554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-17 Score=163.11 Aligned_cols=251 Identities=12% Similarity=-0.004 Sum_probs=152.0
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM 146 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~ 146 (336)
...+...+..|++++|+..|.+.++..| ++..+.++|.+|.. .+++++|+..++++++. .+..+++.+|.+
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p---~~~~~~n~a~~~~~----l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a 203 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKP---DPVYYSNRAACHNA----LGDWEKVVEDTTAALELDPDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4566778899999999999999888755 46789999999998 68999999999999987 478999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCC----------------------------------------------------------
Q 019734 147 YWEMDKKEAAISLYRQAAVLGD---------------------------------------------------------- 168 (336)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~---------------------------------------------------------- 168 (336)
|...|++++|+..|.++...+.
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 9999999999876654431100
Q ss_pred -------HHHHHHHHHHHHH-------HHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 019734 169 -------PAGQFNLGISYLQ-------EEAVKLLYQASIAG-----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 229 (336)
Q Consensus 169 -------~~a~~~Lg~~~~~-------~~A~~~~~ka~~~~-----~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~ 229 (336)
..++..+|..+.. ++|+.+|+++++.+ ...+++.+|.++.. .+++++|+.+|+++++
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~----~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL----KGKHLEALADLSKSIE 359 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 0011112211110 45555555555432 33455556666555 5556666666666543
Q ss_pred C--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHH
Q 019734 230 G--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH 305 (336)
Q Consensus 230 ~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~ 305 (336)
. .+..+++.+|.++... +++++|+..|+++++. .++.+++++|.++...|++++|+.+|++++...+.....
T Consensus 360 l~P~~~~~~~~la~~~~~~----g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~ 435 (615)
T TIGR00990 360 LDPRVTQSYIKRASMNLEL----GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435 (615)
T ss_pred cCCCcHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH
Confidence 2 3455555555555432 1555555555555543 345555555555555555555555555555544332222
Q ss_pred HHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 306 VKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 306 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
...........++.++|+..+++.++..|
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 22222222333444555555555544444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-17 Score=159.32 Aligned_cols=248 Identities=15% Similarity=-0.010 Sum_probs=128.0
Q ss_pred hcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC
Q 019734 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD 151 (336)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~ 151 (336)
..+..|++++|+..+.++++..|+ ++.++..+|.++.. .+++++|+..|++++.. +++.++..+|.++...|
T Consensus 85 ~~l~~g~~~~A~~~l~~~l~~~P~--~~~a~~~la~~l~~----~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g 158 (656)
T PRK15174 85 SPLASSQPDAVLQVVNKLLAVNVC--QPEDVLLVASVLLK----SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMD 158 (656)
T ss_pred hHhhcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 334456666666666666665555 55556666666555 35666666666666554 35556666666666666
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHH----------------------------------HHHHH----HHHHHHHHHH
Q 019734 152 KKEAAISLYRQAAVL--GDPAGQFNLG----------------------------------ISYLQ----EEAVKLLYQA 191 (336)
Q Consensus 152 ~~~~A~~~~~~a~~~--~~~~a~~~Lg----------------------------------~~~~~----~~A~~~~~ka 191 (336)
++++|+..+++++.. +++.++..++ .++.. ++|+..|+++
T Consensus 159 ~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 159 KELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666655554322 3333332221 11111 3444444444
Q ss_pred HHc--CCHHHHHHHHHHHhcCCCCccCHHH----HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 019734 192 SIA--GHVRAQYQLALCLHRGRGVDFNLQE----AARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRA 263 (336)
Q Consensus 192 ~~~--~~~~a~~~lg~~~~~g~g~~~~~~~----A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a 263 (336)
++. +++.+++++|.+|.. .+++++ |+.+|++++. +++..++..+|.++... +++++|+.+++++
T Consensus 239 l~~~p~~~~~~~~Lg~~l~~----~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~----g~~~eA~~~l~~a 310 (656)
T PRK15174 239 LARGLDGAALRRSLGLAYYQ----SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRT----GQNEKAIPLLQQS 310 (656)
T ss_pred HhcCCCCHHHHHHHHHHHHH----cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHH
Confidence 332 344455555555554 344442 5555555543 34555556666665432 2566666666666
Q ss_pred HHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 264 ADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 264 ~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
+.. .++.+..++|.++...|++++|+..|+++++..+..+.............++.++|...+++..+..|.
T Consensus 311 l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 311 LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 553 345555666666666666666666666666544333222221122223345566666666666555543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.9e-17 Score=158.26 Aligned_cols=256 Identities=12% Similarity=-0.056 Sum_probs=201.4
Q ss_pred ChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHH
Q 019734 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMV 141 (336)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~ 141 (336)
....++.-+..++..|++.+|..++...+...|+ ++++++.||.+... .+++++|+..|++++.. +++.++.
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~----~g~~~~A~~~l~~~l~~~P~~~~a~~ 114 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLA----SSQPDAVLQVVNKLLAVNVCQPEDVL 114 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhh----cCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 3345566677788999999999999999999888 89999999999887 69999999999999987 6899999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHH---------
Q 019734 142 DAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLA--------- 204 (336)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg--------- 204 (336)
.+|.++...|++++|+..|+++++ ++++.++..+|.++.. ++|+..|++++.. +++.++..++
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~ 194 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLP 194 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999986 4789999999999988 7888888776543 3444444432
Q ss_pred -------------------------HHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHH---
Q 019734 205 -------------------------LCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHR--- 254 (336)
Q Consensus 205 -------------------------~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~--- 254 (336)
.++.. .+++++|+..|++++. ++++.+++++|.+|.... +++
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~----~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G----~~~eA~ 266 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCA----VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSG----RSREAK 266 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CchhhH
Confidence 23322 4677777777777754 357788888888886533 444
Q ss_pred -HHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCc--HHHHHHHHHHHhhcChhcHHHHHHHHHHh
Q 019734 255 -QARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSW 329 (336)
Q Consensus 255 -~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 329 (336)
+|+.+|++++.. +++.++.++|.++...|++++|+.++++++...+ +.+...++.+ ....++.++|...+++.
T Consensus 267 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~--l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 267 LQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA--LRQVGQYTAASDEFVQL 344 (656)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHCCCHHHHHHHHHHH
Confidence 488999998874 5677888999999999999999999999988654 4444444444 34456788888888888
Q ss_pred hcCCCC
Q 019734 330 RAMPSL 335 (336)
Q Consensus 330 ~~~~~~ 335 (336)
....|.
T Consensus 345 l~~~P~ 350 (656)
T PRK15174 345 AREKGV 350 (656)
T ss_pred HHhCcc
Confidence 877765
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.5e-17 Score=157.79 Aligned_cols=244 Identities=13% Similarity=0.024 Sum_probs=159.5
Q ss_pred ChhHHhhhHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHH
Q 019734 78 LPQLRAASLVCKSWNDALR-PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKE 154 (336)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~-~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~ 154 (336)
.+++.+|...+...++... ....+.+++.+|.++.. .+++++|+.+|++++.. ++..+++.+|.++...|+++
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~----~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~ 382 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL----KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPD 382 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHH
Confidence 3567777766666665432 12356677777777776 47788888888877765 35677777788777778888
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 019734 155 AAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 226 (336)
Q Consensus 155 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~ 226 (336)
+|+..|+++++. +++.+++.+|.++.. ++|+.+|+++++. ++..+++++|.++.. .+++++|+..|++
T Consensus 383 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~~~~~~ 458 (615)
T TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK----EGSIASSMATFRR 458 (615)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence 888888777654 567777778877776 7788888877765 466777777777776 6777788887777
Q ss_pred HHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH--H------HHHHHHH-HhhccCCHHHHHHHHHHH
Q 019734 227 AAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG--K------AQLEHGL-GLFTEGEMMKAVVYLELA 295 (336)
Q Consensus 227 a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~--~------a~~~lg~-~~~~~~~~~~A~~~~~~A 295 (336)
++. +.++.+++.+|.++... +++++|+..|++++...+. . ...+.+. ++...|++++|..+|+++
T Consensus 459 al~~~P~~~~~~~~lg~~~~~~----g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 459 CKKNFPEAPDVYNYYGELLLDQ----NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred HHHhCCCChHHHHHHHHHHHHc----cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 754 35677777777777542 2777777777777764321 1 1122222 233357777777777777
Q ss_pred HHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCC
Q 019734 296 TRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMP 333 (336)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 333 (336)
+..++................++.++|...+++..+..
T Consensus 535 l~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 535 LIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 76654433333333333444555666666665554443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-17 Score=145.04 Aligned_cols=227 Identities=22% Similarity=0.181 Sum_probs=184.6
Q ss_pred CCCCChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCC-CCCHH----HHHH---------------------------H
Q 019734 60 DFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRP-LREAM----VLLR---------------------------W 107 (336)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~----a~~~---------------------------l 107 (336)
.|+..+.-..+.+...+...++++|+..+....+..|. .++-+ ++|. +
T Consensus 257 gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiI 336 (559)
T KOG1155|consen 257 GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCII 336 (559)
T ss_pred cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeee
Confidence 35555544455666678899999999999888887663 22221 2221 2
Q ss_pred HHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH--
Q 019734 108 GKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ-- 181 (336)
Q Consensus 108 g~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~-- 181 (336)
|..|.- .++.++|+.||++|++++ ...+|..+|.-|.+.++...|+..|++|++- .|-.|||.||.+|.-
T Consensus 337 aNYYSl----r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 337 ANYYSL----RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred hhHHHH----HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc
Confidence 222222 578999999999999984 6889999999999999999999999999876 688999999999988
Q ss_pred --HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHcCCCCcccHHH
Q 019734 182 --EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV--RAMYNTSLCYSFGEGLPLSHRQ 255 (336)
Q Consensus 182 --~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~~g~~~~~~~ 255 (336)
.-|+-+|++|.+. .++..+..||.||.. ..+.++|+.+|++|+..+++ .+++.||.+|.+.. +..+
T Consensus 413 Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k----l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~----d~~e 484 (559)
T KOG1155|consen 413 MHFYALYYFQKALELKPNDSRLWVALGECYEK----LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK----DLNE 484 (559)
T ss_pred chHHHHHHHHHHHhcCCCchHHHHHHHHHHHH----hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH----hHHH
Confidence 9999999999764 799999999999998 89999999999999988876 89999999997644 9999
Q ss_pred HHHHHHHHHHc-------CC--HHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 256 ARKWMKRAADC-------GH--GKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 256 A~~~~~~a~~~-------~~--~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
|.++|++.++. ++ ..+...|+..+.+.+++++|-.+..+....
T Consensus 485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 99999999872 22 456788999889999999999887777665
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-16 Score=143.80 Aligned_cols=251 Identities=15% Similarity=-0.005 Sum_probs=177.5
Q ss_pred HHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC------HHHHHHH
Q 019734 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS------TLAMVDA 143 (336)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~------~~a~~~l 143 (336)
..+......|++++|+..+.+.++..|+ ++.+++.+|.++.. .+++++|+..+++++.... ..++..+
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDPE--TVELHLALGNLFRR----RGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHH----cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3345556778888888888888877655 67788888888877 5788888888888776531 2467788
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHcCC-------HHHHHHHHHHHhcC
Q 019734 144 GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIAGH-------VRAQYQLALCLHRG 210 (336)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~-------~~a~~~lg~~~~~g 210 (336)
|.+|...|++++|+.+|.++++. .+..++..++.++.. ++|+..|+++++.+. ...+..+|.++..
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~- 192 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA- 192 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh-
Confidence 88888888888888888888764 456777788888776 788888888776431 1234567777766
Q ss_pred CCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHhhccCCH
Q 019734 211 RGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFTEGEM 285 (336)
Q Consensus 211 ~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~~~~~ 285 (336)
.+++++|+.+|+++++ +.+..+++.+|.+|... +++++|+.+|+++...+. ...+..++.+|...|++
T Consensus 193 ---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 193 ---RGDLDAARALLKKALAADPQCVRASILLGDLALAQ----GDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred ---CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence 6788888888888764 34677778888887652 278888888888876532 24456777888888888
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 286 MKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 286 ~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
++|...+++++...+..... ...+......++.++|...+.+..+..|.
T Consensus 266 ~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~ 314 (389)
T PRK11788 266 AEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPS 314 (389)
T ss_pred HHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcC
Confidence 88888888887754322111 23333344456677777777777666654
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-15 Score=153.25 Aligned_cols=249 Identities=17% Similarity=0.079 Sum_probs=183.2
Q ss_pred HHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019734 72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWE 149 (336)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~ 149 (336)
+......|++++|...+..+.+..++ ++..++.+|.+|.. .+++++|+.+|++++.. ++..+++.+|.++..
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQPD--NASLHNLLGAIYLG----KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ 511 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 33445667777777777777766554 67788888888887 58888999999988875 577888888888888
Q ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHH
Q 019734 150 MDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAA 221 (336)
Q Consensus 150 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~ 221 (336)
.|++++|+..|+++++. ++..++..++.++.. ++|+.+|+++++. ++...++.++.+|.. .+++++|+
T Consensus 512 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~ 587 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLG----KGQLKKAL 587 (899)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHH----CCCHHHHH
Confidence 88999999998888754 677888888888877 8888888888654 456777788888876 67888888
Q ss_pred HHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 222 RWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 222 ~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
.+++++++ +.+...+..+|.+|... +++++|+.+|+++++. .++.++..+|.++...|++++|..+|++++.
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 588 AILNEAADAAPDSPEAWLMLGRAQLAA----GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888765 35677888888888653 2888888888888764 4567778888888888888888888888887
Q ss_pred cCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 298 AGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 298 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
..+................++.++|..+++.+....|
T Consensus 664 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 700 (899)
T TIGR02917 664 LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP 700 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 6544333333333333444556666666666655444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.8e-16 Score=160.22 Aligned_cols=247 Identities=15% Similarity=0.058 Sum_probs=182.9
Q ss_pred HHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH--
Q 019734 71 KIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM-- 146 (336)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~-- 146 (336)
.+...+..|++++|+..+.+.++..|+ ++.+++.||.+|.. .+++++|+.+|+++++. ++..++..++.+
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~--~~~a~~~Lg~~~~~----~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNT--DSYAVLGLGDVAMA----RKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344556788999999999999988776 78899999999998 68999999999999876 455555555444
Q ss_pred ----------------------------------------HhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH---
Q 019734 147 ----------------------------------------YWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ--- 181 (336)
Q Consensus 147 ----------------------------------------~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~--- 181 (336)
+...|++++|+.+|+++++. +++.+++.||.+|..
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 44568888888888888754 678888999998888
Q ss_pred -HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH-------------------------------
Q 019734 182 -EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA------------------------------- 227 (336)
Q Consensus 182 -~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a------------------------------- 227 (336)
++|+..|+++++. +++.+.+.+|.++.. .++.++|+.+++++
T Consensus 511 ~~~A~~~l~~al~~~P~~~~~~~a~al~l~~----~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 511 RSQADALMRRLAQQKPNDPEQVYAYGLYLSG----SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 8899999888764 577777777766554 45555555555432
Q ss_pred -----------HHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 019734 228 -----------AEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLEL 294 (336)
Q Consensus 228 -----------~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 294 (336)
..+.++..++.+|.+|... +++++|+..|++++.. +++.++++++.+|...|++++|...|++
T Consensus 587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~~----g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 587 GKEAEAEALLRQQPPSTRIDLTLADWAQQR----GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1234566777788888653 3888888888888864 6678888888888888888888888888
Q ss_pred HHHcC--cHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCC
Q 019734 295 ATRAG--ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMP 333 (336)
Q Consensus 295 A~~~~--~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 333 (336)
++... +......++.++. ..++.++|.+.+++++...
T Consensus 663 ll~~~p~~~~~~~~la~~~~--~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWA--ALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HhccCCCChHHHHHHHHHHH--hCCCHHHHHHHHHHHhhhC
Confidence 87663 3444444444443 4566777888877777654
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-15 Score=155.78 Aligned_cols=221 Identities=16% Similarity=0.047 Sum_probs=147.7
Q ss_pred ChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHH
Q 019734 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMV 141 (336)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~ 141 (336)
.+...+..+...+..|++++|+..+.+.++..|+ ++.+++.+|.+|.. .+++++|+.+|++++..+ +.....
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 94 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN--DAEARFLLGKIYLA----LGDYAAAEKELRKALSLGYPKNQVLP 94 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCChhhhHH
Confidence 3456788888999999999999999999998877 88999999999999 589999999999998763 455566
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC
Q 019734 142 DAGLMYWEMDKKEAAISLYRQAAV---LGDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRG 212 (336)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g 212 (336)
.+|.++...|++++|+..+.++.. ...+.+++.+|.++.. ++|+.+|+++++. +++.+++.+|.++..
T Consensus 95 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~--- 171 (899)
T TIGR02917 95 LLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALA--- 171 (899)
T ss_pred HHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH---
Confidence 666666666666666666655431 1344555666666655 6666666666543 355566666666655
Q ss_pred CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHH
Q 019734 213 VDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKA 288 (336)
Q Consensus 213 ~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A 288 (336)
.+++++|+.++++++. +.+..+++.+|.++... +++++|..+|++++.. +++..++.++.++...|++++|
T Consensus 172 -~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A 246 (899)
T TIGR02917 172 -ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSL----GNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEA 246 (899)
T ss_pred -CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5566666666666543 24555566666665432 2666666666666553 3345555555555555666666
Q ss_pred HHHHHHHHHc
Q 019734 289 VVYLELATRA 298 (336)
Q Consensus 289 ~~~~~~A~~~ 298 (336)
...++++++.
T Consensus 247 ~~~~~~~~~~ 256 (899)
T TIGR02917 247 EKHADALLKK 256 (899)
T ss_pred HHHHHHHHHh
Confidence 6555555544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-15 Score=157.30 Aligned_cols=254 Identities=18% Similarity=0.075 Sum_probs=151.3
Q ss_pred HHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHH-----------
Q 019734 72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STL----------- 138 (336)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~----------- 138 (336)
+..++..|++++|+..+.+.++..|+ ++.+++.||.+|.. .+++++|+.+|+++++.. +..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~--~~~a~~~Lg~~~~~----~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK--DSEALGALGQAYSQ----QGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 44556677777777777777777665 67777777777777 477777777777777642 111
Q ss_pred ---HHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 139 ---AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCL 207 (336)
Q Consensus 139 ---a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~ 207 (336)
....+|.++...|++++|+..|+++++. +++.+++.||.++.. ++|+.+|+++++. ++..++..++.+|
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1123455555556666666666665543 455555556666555 5555666555543 3444444444433
Q ss_pred hcCC--------------------------------------CCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCC
Q 019734 208 HRGR--------------------------------------GVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGE 247 (336)
Q Consensus 208 ~~g~--------------------------------------g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~ 247 (336)
..+. -..+++++|+.+|++++. ++++.+++.+|.+|...
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~- 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA- 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-
Confidence 2100 013555566666665543 34555555555555432
Q ss_pred CCcccHHHHHHHHHHHHHc-------------------------------------------------------------
Q 019734 248 GLPLSHRQARKWMKRAADC------------------------------------------------------------- 266 (336)
Q Consensus 248 g~~~~~~~A~~~~~~a~~~------------------------------------------------------------- 266 (336)
+++++|+..|++++..
T Consensus 509 ---G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 509 ---GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred ---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 1555555555555432
Q ss_pred ---------------CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhc
Q 019734 267 ---------------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRA 331 (336)
Q Consensus 267 ---------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 331 (336)
.++...+.||.++.+.|++++|+..|+++++..+.+....+.........++.++|++.++++.+
T Consensus 586 ~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 586 SGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred CCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 22334567788888888999999999998887544444444444445556778888888888877
Q ss_pred CCCC
Q 019734 332 MPSL 335 (336)
Q Consensus 332 ~~~~ 335 (336)
..|.
T Consensus 666 ~~p~ 669 (1157)
T PRK11447 666 TAND 669 (1157)
T ss_pred cCCC
Confidence 6653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-14 Score=147.72 Aligned_cols=237 Identities=14% Similarity=-0.056 Sum_probs=183.7
Q ss_pred hhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCHHHHH
Q 019734 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAI 157 (336)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~ 157 (336)
++..+|+..+.......|+ ......+|.++.. .+++++|+.+|++++.. ....+++.+|.++...|++++|+
T Consensus 490 ~~~~eAi~a~~~Al~~~Pd---~~~~L~lA~al~~----~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~ 562 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQPD---AWQHRAVAYQAYQ----VEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARD 562 (987)
T ss_pred CCcHHHHHHHHHHHHhCCc---hHHHHHHHHHHHH----CCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHH
Confidence 6777888878888777654 2345556666555 47999999999998765 34566788899999999999999
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH-
Q 019734 158 SLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE- 229 (336)
Q Consensus 158 ~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~- 229 (336)
.+|+++++. .+......++..... ++|+.+|+++++.. ++.+++++|.++.. .+++++|+.+|++++.
T Consensus 563 ~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~----lG~~deA~~~l~~AL~l 638 (987)
T PRK09782 563 RWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQ----RHNVPAAVSDLRAALEL 638 (987)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence 999999876 345555555555533 99999999998753 48889999999988 8999999999999865
Q ss_pred -CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHH
Q 019734 230 -GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHV 306 (336)
Q Consensus 230 -~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~ 306 (336)
++++.++.++|.++... +++++|+..|+++++. +++.+++++|.++...|++++|..+|+++++..+..+...
T Consensus 639 ~Pd~~~a~~nLG~aL~~~----G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 639 EPNNSNYQAALGYALWDS----GDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred CCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 57899999999988653 3899999999999874 6788899999999999999999999999998877666655
Q ss_pred HHHHHhhcChhcHHHHHHHHHHhh
Q 019734 307 KNVILQQLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 307 ~~~~~~~~~~~~~~~a~~~~~~~~ 330 (336)
...........+...+.+.+....
T Consensus 715 ~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 715 PLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHh
Confidence 555544445555666666444433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-14 Score=145.67 Aligned_cols=244 Identities=12% Similarity=0.052 Sum_probs=192.4
Q ss_pred hhHHhhhHHHHHHHHHhCC-CC--CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCHH
Q 019734 79 PQLRAASLVCKSWNDALRP-LR--EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKKE 154 (336)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~-~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~~ 154 (336)
|++.++...|..+....+. .+ ++.+++.||.++.. +++.+|+..|.+++... +......+|.++...|+++
T Consensus 452 ~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-----~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 452 SQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-----TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYA 526 (987)
T ss_pred hhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-----CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHH
Confidence 4455555555666666554 23 89999999999987 48888999898888763 3334556677778899999
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHH----HHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 019734 155 AAISLYRQAAVL-GDPAGQFNLGISYLQ----EEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 227 (336)
Q Consensus 155 ~A~~~~~~a~~~-~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a 227 (336)
+|+..|++++.. ....+++.+|.++.. ++|+.+|+++++.+ +......++..... .+++++|+.+|+++
T Consensus 527 eAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~----~Gr~~eAl~~~~~A 602 (987)
T PRK09782 527 TALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYI----PGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh----CCCHHHHHHHHHHH
Confidence 999999998765 445668889998888 99999999998864 45555556655544 58999999999999
Q ss_pred HHC-CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHH
Q 019734 228 AEG-GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD 304 (336)
Q Consensus 228 ~~~-~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~ 304 (336)
++. .++.++.++|.++.... ++++|+.+|++++.. +++.++.++|.++...|++++|+..|++|++..+.++.
T Consensus 603 L~l~P~~~a~~~LA~~l~~lG----~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~ 678 (987)
T PRK09782 603 LNIAPSANAYVARATIYRQRH----NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA 678 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 764 24889999999997633 999999999999985 67889999999999999999999999999997655444
Q ss_pred HHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 305 HVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 305 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
............++.+.|+..+++.+...|.
T Consensus 679 a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 4444444556677788999999999887774
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-14 Score=128.20 Aligned_cols=218 Identities=15% Similarity=0.016 Sum_probs=158.7
Q ss_pred hhHHhhhHHHHHHHHHhC--CCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHH
Q 019734 79 PQLRAASLVCKSWNDALR--PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKE 154 (336)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~--~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~ 154 (336)
+..+.++..+.+.+...+ +...+..++.+|.+|.. .++.++|+..|+++++. +++.+++.+|.++...|+++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDS----LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH
Confidence 445555555555665333 22457889999999988 58999999999999987 58999999999999999999
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCccCHHHHHHHHHHH
Q 019734 155 AAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIAGHVRAQYQLAL-CLHRGRGVDFNLQEAARWYLRA 227 (336)
Q Consensus 155 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~~~a~~~lg~-~~~~g~g~~~~~~~A~~~~~~a 227 (336)
+|+..|+++++. ++..+++++|.++.. ++|+..|+++++.+....+..+.. ++.. .+++++|+..|.++
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~----~~~~~~A~~~l~~~ 191 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAES----KLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc----cCCHHHHHHHHHHH
Confidence 999999999865 789999999999987 999999999988753222222222 2223 57899999999887
Q ss_pred HHCCCHHHHH-HHHHHHHcCCCCcccHHHHHHHHHHHH----H--cCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCc
Q 019734 228 AEGGYVRAMY-NTSLCYSFGEGLPLSHRQARKWMKRAA----D--CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 228 ~~~~~~~a~~-~lg~~~~~~~g~~~~~~~A~~~~~~a~----~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~ 300 (336)
+...++..+. .+..++ .|.. +..+++..+..+. + ....+++++||.++...|++++|+.+|++|++.++
T Consensus 192 ~~~~~~~~~~~~~~~~~-lg~~---~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 192 YEKLDKEQWGWNIVEFY-LGKI---SEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HhhCCccccHHHHHHHH-ccCC---CHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 7654444332 233333 2221 3334444444322 2 23467899999999999999999999999999875
Q ss_pred H-HHHHHHH
Q 019734 301 T-AADHVKN 308 (336)
Q Consensus 301 ~-~a~~~~~ 308 (336)
+ ..++...
T Consensus 268 ~~~~e~~~~ 276 (296)
T PRK11189 268 YNFVEHRYA 276 (296)
T ss_pred chHHHHHHH
Confidence 4 3333333
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.5e-16 Score=143.62 Aligned_cols=224 Identities=15% Similarity=0.043 Sum_probs=165.5
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCC--------------------------------CCCHHHHHHHHHHHhcCCC
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRP--------------------------------LREAMVLLRWGKRFKHGRG 116 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------------------------------~~~~~a~~~lg~~~~~g~g 116 (336)
.+.+..+|+.++|+++..++..+-+..|- ...|+.|-.+|.||-.
T Consensus 357 ~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL--- 433 (638)
T KOG1126|consen 357 SQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL--- 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh---
Confidence 44556678889999888777655443221 1266777778888777
Q ss_pred CcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHH
Q 019734 117 VRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLL 188 (336)
Q Consensus 117 ~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~ 188 (336)
++|++.|+++|++|+++ +.+.|+..+|.-+....++|+|..+|++|+.. .+..|||.||.+|+. +.|.-+|
T Consensus 434 -Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~f 512 (638)
T KOG1126|consen 434 -QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHF 512 (638)
T ss_pred -hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHH
Confidence 57888888888888877 36777778888777778888888888888744 677888888888877 7888888
Q ss_pred HHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019734 189 YQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 264 (336)
Q Consensus 189 ~ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~ 264 (336)
+||++.+ +......+|.++.. .++.++|+.+|++|+. ..++...+..|.++.... ++++|+.-+++..
T Consensus 513 qkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~----~~~eal~~LEeLk 584 (638)
T KOG1126|consen 513 QKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLG----RYVEALQELEELK 584 (638)
T ss_pred HhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhc----chHHHHHHHHHHH
Confidence 8887654 56667778888877 7788888888888854 467777888888775322 7888888887775
Q ss_pred H--cCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHH
Q 019734 265 D--CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD 304 (336)
Q Consensus 265 ~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~ 304 (336)
+ ..+...++-||.+|...|+.+.|+..|.-|.+.++..+.
T Consensus 585 ~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 585 ELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 5 356667788888888888888888888888877665444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-15 Score=139.60 Aligned_cols=233 Identities=17% Similarity=0.093 Sum_probs=187.7
Q ss_pred HHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH-----------------
Q 019734 71 KIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----------------- 133 (336)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~----------------- 133 (336)
.+......-+..+|+.++.+.-+...+ ....+..+|..|+. ..++++|..+|+.+-+
T Consensus 325 ~~~~~~s~y~~~~A~~~~~klp~h~~n--t~wvl~q~GrayFE----l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 325 EGYRSLSQYNCREALNLFEKLPSHHYN--TGWVLSQLGRAYFE----LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCC--chHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 333444556677888777775555444 45888889999999 6899999999976621
Q ss_pred -------------------cCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHH
Q 019734 134 -------------------RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLL 188 (336)
Q Consensus 134 -------------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~ 188 (336)
...|++|..+|.+|--++|.+.|+++|++|++. +++-|+..+|.=+.. ++|..+|
T Consensus 399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f 478 (638)
T KOG1126|consen 399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF 478 (638)
T ss_pred HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH
Confidence 135789999999999999999999999999866 678888888887766 9999999
Q ss_pred HHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019734 189 YQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 264 (336)
Q Consensus 189 ~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~ 264 (336)
++|+.. .+..|||-||.+|.. .+.++.|..+|++|++. .+...+..+|.++.+ .++.++|+..|++|+
T Consensus 479 r~Al~~~~rhYnAwYGlG~vy~K----qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 479 RKALGVDPRHYNAWYGLGTVYLK----QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAI 550 (638)
T ss_pred HhhhcCCchhhHHHHhhhhheec----cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHH
Confidence 999876 488999999999998 89999999999999765 566778889999876 338999999999998
Q ss_pred Hc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH--HHHHHHHHHHhhcChh
Q 019734 265 DC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET--AADHVKNVILQQLSAT 317 (336)
Q Consensus 265 ~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~--~a~~~~~~~~~~~~~~ 317 (336)
.. .++-..|.-|.+++..+++++|...+++..+.-+. ...+.++.++..+...
T Consensus 551 ~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 551 HLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred hcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence 76 45677799999999999999999999998876544 4555666666665443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-14 Score=131.38 Aligned_cols=252 Identities=16% Similarity=0.055 Sum_probs=191.7
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPL--REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVD 142 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~ 142 (336)
.....+..++..|++++|...+....+..... ....++..||.+|.. .+++++|+.+|+++.+. .+..++..
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~ 146 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK----AGLLDRAEELFLQLVDEGDFAEGALQQ 146 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCcchHHHHHH
Confidence 44555666678999999998888777643211 123678899999988 58999999999999975 46788999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcC--C-----HHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019734 143 AGLMYWEMDKKEAAISLYRQAAVLG--D-----PAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHR 209 (336)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~~--~-----~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~ 209 (336)
++.++...|++++|+..|+++++.+ + ...+..+|.++.. ++|+.+|+++++. +...+++.+|.+|..
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 226 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALA 226 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999998753 1 2245678888876 9999999999875 478899999999998
Q ss_pred CCCCccCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHhhccCCH
Q 019734 210 GRGVDFNLQEAARWYLRAAEGGY---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-HGKAQLEHGLGLFTEGEM 285 (336)
Q Consensus 210 g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~ 285 (336)
.+++++|+.+|+++.+.+. ..++..++.+|... +++++|+.+++++.... +......++.++...|++
T Consensus 227 ----~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~----g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~ 298 (389)
T PRK11788 227 ----QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL----GDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGP 298 (389)
T ss_pred ----CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCH
Confidence 8999999999999986532 35677888888653 39999999999998752 234458899999999999
Q ss_pred HHHHHHHHHHHHcCcHHHHHH--HHHHHhhcChhcHHHHHHHHHHhh
Q 019734 286 MKAVVYLELATRAGETAADHV--KNVILQQLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 286 ~~A~~~~~~A~~~~~~~a~~~--~~~~~~~~~~~~~~~a~~~~~~~~ 330 (336)
++|..+|+++++..+...... +......-..++.+++...++++.
T Consensus 299 ~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 299 EAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 999999999998865443322 333222111334555555444443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.8e-15 Score=131.33 Aligned_cols=224 Identities=16% Similarity=0.101 Sum_probs=154.6
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM 146 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (336)
+.++-.++.+|+++.|+++.+-+-++......+.+-..-++.|.+| -+++..|..|-..|+..+ ++.++.+-|.+
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqg---gk~~~~aqqyad~aln~dryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQG---GKDFADAQQYADIALNIDRYNAAALTNKGNI 499 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhc---ccchhHHHHHHHHHhcccccCHHHhhcCCce
Confidence 6677788999999999999888877655433444444344445544 368888888888887763 77788888888
Q ss_pred HhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHH--HcCCHHHHHHHHHHHhcCCCCccCHH
Q 019734 147 YWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQAS--IAGHVRAQYQLALCLHRGRGVDFNLQ 218 (336)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~--~~~~~~a~~~lg~~~~~g~g~~~~~~ 218 (336)
-+..||+++|.++|+.|+.. ...+|+|++|..+.. ++|+.+|.|.- =.++.+.++.++.+|+. ..|..
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~----led~a 575 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL----LEDPA 575 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----hhCHH
Confidence 88888888888888888866 356788888888776 88888888763 35778888888888877 77888
Q ss_pred HHHHHHHHHHH--CCCHHHHHHHHHHHHcCCC------------------------------CcccHHHHHHHHHHHHHc
Q 019734 219 EAARWYLRAAE--GGYVRAMYNTSLCYSFGEG------------------------------LPLSHRQARKWMKRAADC 266 (336)
Q Consensus 219 ~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g------------------------------~~~~~~~A~~~~~~a~~~ 266 (336)
+|++||..+.. +.++.....||.+|-+... ..+=.++|+.+|++|.-.
T Consensus 576 qaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali 655 (840)
T KOG2003|consen 576 QAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI 655 (840)
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 88888877743 3566666666666633110 011345666666666543
Q ss_pred CC--HHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 267 GH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 267 ~~--~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
.+ ..-+..++.|+.+.|+|++|+..|+..-+.-
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 22 3334566667777777777777777766643
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-14 Score=121.75 Aligned_cols=219 Identities=16% Similarity=0.104 Sum_probs=190.1
Q ss_pred HHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 019734 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ 181 (336)
Q Consensus 105 ~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 181 (336)
..+|.||.. .+-+.+|.+.|..++.. .+++.+..|+.+|.+..+++.|+..|.+.++. ++..-....+.++..
T Consensus 227 ~Q~gkCylr----Lgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLR----LGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHH----hcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 359999999 57899999999999987 68999999999999999999999999999987 677777778888877
Q ss_pred ----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccH
Q 019734 182 ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSH 253 (336)
Q Consensus 182 ----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~g~~~~~ 253 (336)
+.|+++|+.+++. .+.++..-+|.-|.. .++++.|..+|++.++.| +++-+.|+|.|.+.+. .+
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY----~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq----Q~ 374 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY----DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ----QI 374 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeecccc----CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc----ch
Confidence 9999999999887 467777667766666 589999999999999886 7999999999998755 89
Q ss_pred HHHHHHHHHHHHc-----CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHH
Q 019734 254 RQARKWMKRAADC-----GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDS 328 (336)
Q Consensus 254 ~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 328 (336)
+-++..|++|+.. .-.+.+||||.+....||+..|..+|+.++..++..++.+.+...-....++++.|+.+.+.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 9999999999873 22678899999999999999999999999998877777666666666778889999999999
Q ss_pred hhcCCCC
Q 019734 329 WRAMPSL 335 (336)
Q Consensus 329 ~~~~~~~ 335 (336)
..+..|-
T Consensus 455 A~s~~P~ 461 (478)
T KOG1129|consen 455 AKSVMPD 461 (478)
T ss_pred hhhhCcc
Confidence 8888774
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-13 Score=123.51 Aligned_cols=186 Identities=17% Similarity=0.103 Sum_probs=157.5
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-----CH-------------------------------HHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----ST-------------------------------LAMVDA 143 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~-----~~-------------------------------~a~~~l 143 (336)
........|.++.. ..|+++|+..|+...+.+ +- +.+..+
T Consensus 261 ~~~i~~~~A~~~y~----~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiI 336 (559)
T KOG1155|consen 261 SMYIKTQIAAASYN----QRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCII 336 (559)
T ss_pred cHHHHHHHHHHHhh----hhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeee
Confidence 44455556777776 589999999999887642 11 122334
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCcc
Q 019734 144 GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDF 215 (336)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~--~~~a~~~lg~~~~~g~g~~~ 215 (336)
|..|...++.++|+.+|++|+.. +...+|..+|.=|.+ ..|++.|++|++.+ +-+|||-||.+|.. .+
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei----m~ 412 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI----MK 412 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH----hc
Confidence 55555568999999999999976 678999999999999 99999999999875 78999999999997 78
Q ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH--HHHHHHHHHhhccCCHHHHHHH
Q 019734 216 NLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG--KAQLEHGLGLFTEGEMMKAVVY 291 (336)
Q Consensus 216 ~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~~~~~~A~~~ 291 (336)
-..=|.-+|++|.. +.|...+..||.||.+.. +.++|+.+|++|+..++. .++..||.+|.+.++.++|..+
T Consensus 413 Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~----~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 413 MHFYALYYFQKALELKPNDSRLWVALGECYEKLN----RLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhc----cHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 88999999999954 689999999999997755 999999999999998776 8899999999999999999999
Q ss_pred HHHHHH
Q 019734 292 LELATR 297 (336)
Q Consensus 292 ~~~A~~ 297 (336)
|++-++
T Consensus 489 yek~v~ 494 (559)
T KOG1155|consen 489 YEKYVE 494 (559)
T ss_pred HHHHHH
Confidence 999887
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-13 Score=134.44 Aligned_cols=209 Identities=15% Similarity=0.046 Sum_probs=128.1
Q ss_pred CChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhc----CC-CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019734 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKH----GR-GVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWE 149 (336)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~----g~-g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~ 149 (336)
..+++.+|..++.+.++..|+ ++.++..||.+|.. |. ...+++++|+.++++|++. +++.++..+|.++..
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~--~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPN--SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI 350 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 345566676666666666555 56666667766542 11 1234567777777777766 466777777777777
Q ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHH
Q 019734 150 MDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAA 221 (336)
Q Consensus 150 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~ 221 (336)
.|++++|+..|+++++. +++.+++.+|.++.. ++|+.+|+++++. .++.+.+.++.++.. .+++++|+
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~----~g~~eeA~ 426 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY----HTGIDDAI 426 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh----ccCHHHHH
Confidence 77777777777776644 566777777777766 6777777777665 344444444444443 45677777
Q ss_pred HHHHHHHH---CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 019734 222 RWYLRAAE---GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELAT 296 (336)
Q Consensus 222 ~~~~~a~~---~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~ 296 (336)
.++++++. ++++.++.++|.+|.. .| ++++|..++++.... ....+...|+..|...|+ +|...+++..
T Consensus 427 ~~~~~~l~~~~p~~~~~~~~la~~l~~-~G---~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll 500 (553)
T PRK12370 427 RLGDELRSQHLQDNPILLSMQVMFLSL-KG---KHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFL 500 (553)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHh-CC---CHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHH
Confidence 77777653 3456666777777643 22 777777777665443 233445566666666553 5555555543
Q ss_pred H
Q 019734 297 R 297 (336)
Q Consensus 297 ~ 297 (336)
+
T Consensus 501 ~ 501 (553)
T PRK12370 501 E 501 (553)
T ss_pred H
Confidence 3
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-13 Score=133.62 Aligned_cols=188 Identities=14% Similarity=-0.010 Sum_probs=153.8
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHc--CCH
Q 019734 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWE---------MDKKEAAISLYRQAAVL--GDP 169 (336)
Q Consensus 103 a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~---------~~~~~~A~~~~~~a~~~--~~~ 169 (336)
.+|..|..... .....++++|+.+|++|++. +++.++..+|.+|.. .+++++|+..+++|++. +++
T Consensus 260 ~~~lrg~~~~~-~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~ 338 (553)
T PRK12370 260 MVYLRGKHELN-QYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP 338 (553)
T ss_pred HHHHHhHHHHH-ccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH
Confidence 45556654443 23456789999999999998 478899999987753 24589999999999865 789
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHH
Q 019734 170 AGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSL 241 (336)
Q Consensus 170 ~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 241 (336)
.++..+|.++.. ++|+.+|++|++. +++.+++.+|.++.. .+++++|+.+|+++++. .++.+.+.++.
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~ 414 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM----AGQLEEALQTINECLKLDPTRAAAGITKLW 414 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 999999999887 9999999999876 588999999999998 89999999999999765 55556555555
Q ss_pred HHHcCCCCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 242 CYSFGEGLPLSHRQARKWMKRAADC---GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 242 ~~~~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
++.. .| ++++|+.++++++.. +++.++.++|.+|...|++++|..++++.....
T Consensus 415 ~~~~-~g---~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 415 ITYY-HT---GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHh-cc---CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 4433 23 799999999999864 467788999999999999999999999876553
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-13 Score=115.95 Aligned_cols=186 Identities=18% Similarity=0.176 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
.+.+++.+|.++.. .+++++|+.+|++++.. .+..++..+|.++...|++++|+.+|+++++. .++.+++++
T Consensus 30 ~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 105 (234)
T TIGR02521 30 AAKIRVQLALGYLE----QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 45667777888777 57888888888887765 46777788888888888888888888887754 456666667
Q ss_pred HHHHHH----HHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Q 019734 176 GISYLQ----EEAVKLLYQASIA----GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 245 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~----~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 245 (336)
|.++.. ++|+.+|+++++. .....++.+|.++.. .+++++|..+|++++.. ++..++..+|.++..
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 766665 6666666666543 234556666666665 56677777777776543 345666666666654
Q ss_pred CCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 246 GEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 246 ~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
. +++++|..++++++.. .++..+..++.++...|+.++|..+.+.+..
T Consensus 182 ~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 182 R----GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred c----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 2 2677777777766653 3345555566666666777777666655543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=114.01 Aligned_cols=157 Identities=23% Similarity=0.314 Sum_probs=96.1
Q ss_pred CCHHHHHHHHHHHhcCC-CCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHcCCHH
Q 019734 99 REAMVLLRWGKRFKHGR-GVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD-------KKEAAISLYRQAAVLGDPA 170 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~-g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~-------~~~~A~~~~~~a~~~~~~~ 170 (336)
+.+..+|.+|..++.|. |..+++..|+++|+.+++.+++.++.++|.+++.+. |.++|+.++.++.+.++.+
T Consensus 66 ~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~ 145 (248)
T KOG4014|consen 66 SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGE 145 (248)
T ss_pred CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCch
Confidence 44555555555555554 344555555555555555555555555555554431 3455555555555555555
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHH-cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Q 019734 171 GQFNLGISYLQ--EEAVKLLYQASI-AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGE 247 (336)
Q Consensus 171 a~~~Lg~~~~~--~~A~~~~~ka~~-~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~ 247 (336)
++++|...|.. +++. .++- .+.+.---.+|. +.+|.++|.++--+|.+.+++.++.|+..+|..|.
T Consensus 146 aCf~LS~m~~~g~~k~~----t~ap~~g~p~~~~~~~~-------~~kDMdka~qfa~kACel~~~~aCAN~SrMyklGD 214 (248)
T KOG4014|consen 146 ACFLLSTMYMGGKEKFK----TNAPGEGKPLDRAELGS-------LSKDMDKALQFAIKACELDIPQACANVSRMYKLGD 214 (248)
T ss_pred HHHHHHHHHhccchhhc----ccCCCCCCCcchhhhhh-------hhHhHHHHHHHHHHHHhcCChHHHhhHHHHHHccC
Confidence 55555555543 2211 1100 011111111111 13889999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHc
Q 019734 248 GLPLSHRQARKWMKRAADC 266 (336)
Q Consensus 248 g~~~~~~~A~~~~~~a~~~ 266 (336)
|+++|.++|..+-.+|.+.
T Consensus 215 Gv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 215 GVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred CCCccHHHHHHHHHHHHHH
Confidence 9999999999999999764
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-13 Score=116.60 Aligned_cols=191 Identities=19% Similarity=0.129 Sum_probs=157.8
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCL 207 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~ 207 (336)
.+.+++.+|.++...|++++|+.+++++++. +++.++..+|.++.. ++|+.+|+++++. .+..+++++|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4678899999999999999999999999865 678999999999988 9999999999875 5788999999999
Q ss_pred hcCCCCccCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhc
Q 019734 208 HRGRGVDFNLQEAARWYLRAAEG----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT 281 (336)
Q Consensus 208 ~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 281 (336)
.. .+++++|+.+|++++.. .....+..+|.++... +++++|..++.+++.. +++.++..+|.++..
T Consensus 110 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 110 CQ----QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA----GDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HH----cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 88 89999999999999864 3567888999999653 3999999999999885 457788999999999
Q ss_pred cCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 282 EGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 282 ~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
.|++++|..++++++...+................++.+++......+...+|
T Consensus 182 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999999999986433333333333333445677788888777766554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.3e-13 Score=133.56 Aligned_cols=107 Identities=8% Similarity=-0.090 Sum_probs=78.3
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (336)
....+......|++.+|..++.++++..|. ++.++..+|.++.. .+++++|+.++++++.. +++. ++.+|.
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~l~~----~g~~~eA~~~l~~~l~~~P~~~~-~~~la~ 124 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQ--NDDYQRGLILTLAD----AGQYDEALVKAKQLVSGAPDKAN-LLALAY 124 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence 344455556778888888788877777666 67777788887777 47888888888887775 4666 778888
Q ss_pred HHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 019734 146 MYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ 181 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 181 (336)
++...|++++|+..|+++++. +++.+++.+|.++..
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 888888888888888887654 667777777766643
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-14 Score=130.58 Aligned_cols=235 Identities=13% Similarity=0.049 Sum_probs=179.8
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (336)
-++.+..++..|++.+|+-.+....+..|. +++||..||++... ..+-..|+..+++|+++ ++.+++..||.
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~~qaE----NE~E~~ai~AL~rcl~LdP~NleaLmaLAV 361 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGITQAE----NENEQNAISALRRCLELDPTNLEALMALAV 361 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChH--HHHHHHHhhhHhhh----ccchHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 367777778888888888777777777766 88888888888877 46778888888888887 57888888888
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCHHHHHHH--------------HHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHH
Q 019734 146 MYWEMDKKEAAISLYRQAAVLGDPAGQFNL--------------GISYLQEEAVKLLYQASIA----GHVRAQYQLALCL 207 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~L--------------g~~~~~~~A~~~~~ka~~~----~~~~a~~~lg~~~ 207 (336)
.|.+.|.-.+|++++.+=+....+..+... ...++ ..-.++|..|+.. .+++.+.-||.+|
T Consensus 362 SytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l-~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 362 SYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHL-AHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHH-HHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 888888888888888776543222211110 00011 2333445555442 4899999999999
Q ss_pred hcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccC
Q 019734 208 HRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEG 283 (336)
Q Consensus 208 ~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~ 283 (336)
.. .+++++|+.+|+.|+. +.+...|..||..+..|. +.++|+..|++|+++ +...+.||||..+...|
T Consensus 441 ~l----s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~----~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 441 NL----SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGN----RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred hc----chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc----ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh
Confidence 98 8999999999999975 578899999999999877 899999999999985 77889999999999999
Q ss_pred CHHHHHHHHHHHHHcC------------cHHHHHHHHHHHhhcChh
Q 019734 284 EMMKAVVYLELATRAG------------ETAADHVKNVILQQLSAT 317 (336)
Q Consensus 284 ~~~~A~~~~~~A~~~~------------~~~a~~~~~~~~~~~~~~ 317 (336)
.|++|..+|-.|+..- +......+..++..+...
T Consensus 513 ~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 513 AYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred hHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 9999999999998631 124555565555555443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=7e-15 Score=130.62 Aligned_cols=251 Identities=18% Similarity=0.071 Sum_probs=99.4
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg 144 (336)
..+..+..++..|++++|..+..+.....++..++..+..+|.+... .++++.|+..|++.+..+ ++..+..++
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~----~~~~~~A~~ay~~l~~~~~~~~~~~~~l~ 85 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS----LGDYDEAIEAYEKLLASDKANPQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccc
Confidence 34556777889999999987776655554333477888889988887 589999999999998764 567777888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH----HHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCcc
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQ----EEAVKLLYQASIA----GHVRAQYQLALCLHRGRGVDF 215 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~----~~~~a~~~lg~~~~~g~g~~~ 215 (336)
.+ ...+++++|+..+.++.+. +++..+..+..++.. +++...++++... .++..+..+|.++.. .|
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~----~G 160 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ----LG 160 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH----CC
T ss_pred cc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----cC
Confidence 88 6889999999999988765 566666666666665 8888888886543 467889999999998 89
Q ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHH
Q 019734 216 NLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVY 291 (336)
Q Consensus 216 ~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~ 291 (336)
+.++|+..|+++++ ++++.+...++.++.. .| +.+++...++..... .++..+..+|.+|...|++++|..+
T Consensus 161 ~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~---~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~ 236 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPDDPDARNALAWLLID-MG---DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEY 236 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TC---HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CC---ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccc
Confidence 99999999999965 5788999999998854 33 777766666666543 5667788999999999999999999
Q ss_pred HHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhh
Q 019734 292 LELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 292 ~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 330 (336)
|++++...+.+..............++.++|..+..+..
T Consensus 237 ~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 237 LEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccccccccccc
Confidence 999999776666666666666667777888887766554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-12 Score=131.80 Aligned_cols=253 Identities=13% Similarity=0.017 Sum_probs=138.0
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (336)
.+..+..+...|++.+|...+.++++..|+ ++. ++.+|.++.. .+++++|+..|+++++. +++.++..++.
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~P~--~~~-~~~la~~l~~----~g~~~~Al~~l~~al~~~P~~~~~~~~la~ 158 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGAPD--KAN-LLALAYVYKR----AGRHWDELRAMTQALPRAPQTQQYPTEYVQ 158 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHH-HHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 344444555677777777777777777665 555 7777777776 46777777777777765 46666666666
Q ss_pred HHhcCCCHHHHHHHHH----------------------------------------------HHHHc--CCHHH------
Q 019734 146 MYWEMDKKEAAISLYR----------------------------------------------QAAVL--GDPAG------ 171 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~----------------------------------------------~a~~~--~~~~a------ 171 (336)
++...+..++|+..++ ++++. .+|..
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 6665555554443333 11110 11111
Q ss_pred -HHH-HHHHHHH---HHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC--C---------
Q 019734 172 -QFN-LGISYLQ---EEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--Y--------- 232 (336)
Q Consensus 172 -~~~-Lg~~~~~---~~A~~~~~ka~~~~---~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~--~--------- 232 (336)
... +|.++.. ++|+..|+++++.+ ...+...+|.+|.. .+++++|+.+|++++... +
T Consensus 239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~----~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~ 314 (765)
T PRK10049 239 ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLK----LHQPEKAQSILTELFYHPETIADLSDEELA 314 (765)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh----cCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence 010 2222222 55555555555443 12233334554444 445555555555443321 0
Q ss_pred --------------------------------------------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--
Q 019734 233 --------------------------------------------VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-- 266 (336)
Q Consensus 233 --------------------------------------------~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-- 266 (336)
..++..++.++.. .++.++|+..+++++..
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~----~g~~~eA~~~l~~al~~~P 390 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY----SNDLPQAEMRARELAYNAP 390 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Confidence 1233444444432 12566666666665542
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 267 GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 267 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
+++..++.+|.++...|++++|...+++++...+.+....+......+..++.++|+..++++++..|.
T Consensus 391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 391 GNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 455566666666666666666666666666665544444455555555556666666666666666554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-13 Score=124.30 Aligned_cols=226 Identities=16% Similarity=0.144 Sum_probs=180.5
Q ss_pred hcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCC
Q 019734 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD 151 (336)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~ 151 (336)
.++..|+..+-..+.-++.+.-|. .+..|+.+|..|.- .+...+|.+||.||...+ ...+|..+|..+...+
T Consensus 287 ~l~el~~~n~Lf~lsh~LV~~yP~--~a~sW~aVg~YYl~----i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~ 360 (611)
T KOG1173|consen 287 CLYELGKSNKLFLLSHKLVDLYPS--KALSWFAVGCYYLM----IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEG 360 (611)
T ss_pred HHHHhcccchHHHHHHHHHHhCCC--CCcchhhHHHHHHH----hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcc
Confidence 334444444444444455555454 56678888888777 588999999999998874 6789999999999999
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 019734 152 KKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARW 223 (336)
Q Consensus 152 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~--~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~ 223 (336)
+.++|+..|..|... |.-.-.+.||.-|.. +.|..+|.+|.. +.+|-....+|.+... .+.+.+|..|
T Consensus 361 EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~ 436 (611)
T KOG1173|consen 361 EHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKY 436 (611)
T ss_pred hHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHH
Confidence 999999999999887 777888889999986 999999999866 4789999999999887 6889999999
Q ss_pred HHHHHHC----C-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHH
Q 019734 224 YLRAAEG----G-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYL 292 (336)
Q Consensus 224 ~~~a~~~----~-----~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~ 292 (336)
|++++.. . -...+.+||.+|.+.. .+.+|+.+|++++.. .++..+..+|.+|..+|+++.|+.+|
T Consensus 437 f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~----~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 437 FQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN----KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHHHHhhhccccccchhHHHHhHHHHHHHHh----hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 9998732 1 2344789999997643 899999999999875 67888899999999999999999999
Q ss_pred HHHHHcC--cHHHHHHHHHHHhh
Q 019734 293 ELATRAG--ETAADHVKNVILQQ 313 (336)
Q Consensus 293 ~~A~~~~--~~~a~~~~~~~~~~ 313 (336)
.+|+-.. +.-+...++.....
T Consensus 513 hKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 513 HKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHhcCCccHHHHHHHHHHHHh
Confidence 9998764 44566666655544
|
|
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.1e-14 Score=111.03 Aligned_cols=147 Identities=16% Similarity=0.042 Sum_probs=116.4
Q ss_pred ChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC---CCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHH
Q 019734 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR---GVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKE 154 (336)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~---g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~ 154 (336)
.|..........+.++.+.+.+.+.++..+|++...|. ....|.++|.+|+.+|+.+++..+++.|..+|..+.+.
T Consensus 82 KgG~~~~l~~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~k- 160 (248)
T KOG4014|consen 82 KGGDDASLSKAIRPMKIACDANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGKEK- 160 (248)
T ss_pred cCCCccCHHHHHHHHHHHhccCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccchh-
Confidence 33334444444678888888889999999999999986 23456899999999999999999999999999765322
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 019734 155 AAISLYRQAAVLGDPAGQFNLGISYLQ-EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 229 (336)
Q Consensus 155 ~A~~~~~~a~~~~~~~a~~~Lg~~~~~-~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~ 229 (336)
+.+. +.-.+.|----.+|.+... ++|+++--+|.+++++.|..|+..+|..|.||++|.++|..+-.+|.+
T Consensus 161 -~~t~---ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e 232 (248)
T KOG4014|consen 161 -FKTN---APGEGKPLDRAELGSLSKDMDKALQFAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKE 232 (248)
T ss_pred -hccc---CCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence 1111 1111444444556777766 999999999999999999999999999999999999999999998865
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-12 Score=126.48 Aligned_cols=246 Identities=11% Similarity=0.015 Sum_probs=201.9
Q ss_pred CChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCC
Q 019734 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMD 151 (336)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~ 151 (336)
....+..+..+....+...+. +|+++..|+..|+. ++|+..+....+-++... -++++|++|+.|...|
T Consensus 248 d~~s~~~~~~ll~~ay~~n~~--nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G 321 (1018)
T KOG2002|consen 248 DSDSYKKGVQLLQRAYKENNE--NPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG 321 (1018)
T ss_pred chHHHHHHHHHHHHHHhhcCC--CcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence 445666777777777777655 89999999999998 799999999999998763 3578999999999999
Q ss_pred CHHHHHHHHHHHHHc--CC-HHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHH
Q 019734 152 KKEAAISLYRQAAVL--GD-PAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAAR 222 (336)
Q Consensus 152 ~~~~A~~~~~~a~~~--~~-~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~ 222 (336)
|+++|..+|.+++.. ++ .-+++.||.+|.. +.++.+|++..+. ++.+.+..||.+|..-.-.....++|..
T Consensus 322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~ 401 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASN 401 (1018)
T ss_pred cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHH
Confidence 999999999999866 33 6788999999988 9999999999875 7899999999999862122335689999
Q ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-------cCCHHHHHHHHHHhhccCCHHHHHHHHH
Q 019734 223 WYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD-------CGHGKAQLEHGLGLFTEGEMMKAVVYLE 293 (336)
Q Consensus 223 ~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~-------~~~~~a~~~lg~~~~~~~~~~~A~~~~~ 293 (336)
+..++... .+.+++..++.+|.. +|...++.+|.+|+. .-+++..+|+|..++..|++.+|...|+
T Consensus 402 ~l~K~~~~~~~d~~a~l~laql~e~-----~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~ 476 (1018)
T KOG2002|consen 402 VLGKVLEQTPVDSEAWLELAQLLEQ-----TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFK 476 (1018)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHh-----cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHH
Confidence 99999765 689999999999974 377778999999985 2357888999999999999999999999
Q ss_pred HHHHc----CcH-H-------HHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 294 LATRA----GET-A-------ADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 294 ~A~~~----~~~-~-------a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
.|... .+. + -.++++.+...+. +...|.+..+.+++.||+
T Consensus 477 ~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~--~~~~A~e~Yk~Ilkehp~ 528 (1018)
T KOG2002|consen 477 SALGKLLEVANKDEGKSTNLTLKYNLARLLEELH--DTEVAEEMYKSILKEHPG 528 (1018)
T ss_pred HHhhhhhhhcCccccccchhHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHCch
Confidence 99764 222 2 2777888777754 456688899999988885
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-12 Score=107.69 Aligned_cols=166 Identities=19% Similarity=0.184 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
-+.+...||+-|+. .+|+..|..-+++|++. .+..++..++.+|...|+.+.|.+.|++|+.. ++.+.++|.
T Consensus 34 aa~arlqLal~YL~----~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 34 AAKARLQLALGYLQ----QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence 36777888888888 48888888888888887 46788888888888888888888888888754 667777777
Q ss_pred HHHHHH----HHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Q 019734 176 GISYLQ----EEAVKLLYQASIA----GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 245 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~----~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 245 (336)
|..+.. ++|..+|++|++. ..++++-|+|.|-.. .++++.|..+|+++++. ..+.+...++..+..
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAEEYLKRALELDPQFPPALLELARLHYK 185 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence 776665 6666666666553 234556666666555 55666666666666433 445555555555533
Q ss_pred CCCCcccHHHHHHHHHHHHHcCCHH-HHHHHHH
Q 019734 246 GEGLPLSHRQARKWMKRAADCGHGK-AQLEHGL 277 (336)
Q Consensus 246 ~~g~~~~~~~A~~~~~~a~~~~~~~-a~~~lg~ 277 (336)
.+++-.|..++++-...+... ...+||+
T Consensus 186 ----~~~y~~Ar~~~~~~~~~~~~~A~sL~L~i 214 (250)
T COG3063 186 ----AGDYAPARLYLERYQQRGGAQAESLLLGI 214 (250)
T ss_pred ----cccchHHHHHHHHHHhcccccHHHHHHHH
Confidence 225666666666555443222 2245554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-13 Score=117.25 Aligned_cols=210 Identities=17% Similarity=0.164 Sum_probs=177.0
Q ss_pred CCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCH
Q 019734 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKK 153 (336)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~ 153 (336)
+..|-+++|...++..++. .++++.+..|..+|.. ..++..|+..|...++. ++..-....++++...++.
T Consensus 234 lrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~r----idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 234 LRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQR----IDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHH----hccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 3445566776555544444 6789999999999998 68999999999999887 5667777889999999999
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 019734 154 EAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYL 225 (336)
Q Consensus 154 ~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~ 225 (336)
++|+++|+.+++. .+.++.--+|.-|+. +-|+.+|++.+.+| .++-+.|+|.|+.. .++++.+...|+
T Consensus 307 ~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y----aqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 307 EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY----AQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh----hcchhhhHHHHH
Confidence 9999999999977 567777666666655 99999999999987 88999999999998 689999999999
Q ss_pred HHHHC-----CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 226 RAAEG-----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 226 ~a~~~-----~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
+|+.. .-.+.|||||.+. .+.| |+..|..+|+.++.. ++.+++.|||.+-...|++++|..++..|...
T Consensus 383 RAlstat~~~~aaDvWYNlg~va-V~iG---D~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVA-VTIG---DFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHhhccCcchhhhhhhccceeE-Eecc---chHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99653 2378899999988 5555 999999999999874 67899999999999999999999999998775
Q ss_pred Cc
Q 019734 299 GE 300 (336)
Q Consensus 299 ~~ 300 (336)
.+
T Consensus 459 ~P 460 (478)
T KOG1129|consen 459 MP 460 (478)
T ss_pred Cc
Confidence 44
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.4e-12 Score=121.12 Aligned_cols=232 Identities=13% Similarity=0.036 Sum_probs=183.4
Q ss_pred ChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCC-CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC---CHHH
Q 019734 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALRP-LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLA 139 (336)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~---~~~a 139 (336)
.|......+...|-.|+|..+..++...+..... .-.++.+|.+|.+|.. .||+++|..||-++...+ +.-+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha----~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA----QGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHccCCCCcccc
Confidence 3433444455557899999999888887776532 2357789999999999 699999999999998763 3678
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH--------HHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 140 MVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ--------EEAVKLLYQASIA--GHVRAQYQLALCL 207 (336)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~--------~~A~~~~~ka~~~--~~~~a~~~lg~~~ 207 (336)
++.||.+|...|+++.|+.+|.+.+.. ++.+.+..||.+|.. ++|..+..++++. .+.+++..++.+|
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 899999999999999999999999865 889999999999987 8899999999876 5889999999999
Q ss_pred hcCCCCccCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CCH-------
Q 019734 208 HRGRGVDFNLQEAARWYLRAAE-------GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GHG------- 269 (336)
Q Consensus 208 ~~g~g~~~~~~~A~~~~~~a~~-------~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~~~------- 269 (336)
+. +|...++.+|.+|.+ .-.++..+++|..++.. +++.+|...|..|... .+.
T Consensus 425 e~-----~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~----g~~~~A~~~f~~A~~~~~~~~n~de~~~~~ 495 (1018)
T KOG2002|consen 425 EQ-----TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRL----GNIEKALEHFKSALGKLLEVANKDEGKSTN 495 (1018)
T ss_pred Hh-----cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh----cChHHHHHHHHHHhhhhhhhcCccccccch
Confidence 86 678888888888863 23577788888888653 3888888888888754 121
Q ss_pred -HHHHHHHHHhhccCCHHHHHHHHHHHHHc--CcHHHHHHHH
Q 019734 270 -KAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKN 308 (336)
Q Consensus 270 -~a~~~lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~~~ 308 (336)
...|||+.++...++++.|-..|+..+.. |..++...++
T Consensus 496 lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 496 LTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG 537 (1018)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh
Confidence 23688888888888888888888888875 3445544444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-12 Score=106.93 Aligned_cols=192 Identities=14% Similarity=0.055 Sum_probs=158.9
Q ss_pred CCCCCChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC
Q 019734 59 HDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GS 136 (336)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~ 136 (336)
.+-.......++.+...+..|++..|..-..+.++..|. ...+|..++.+|.. .++.+.|.+.|++|+.+ ++
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~----~Ge~~~A~e~YrkAlsl~p~~ 102 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQK----LGENDLADESYRKALSLAPNN 102 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHH----cCChhhHHHHHHHHHhcCCCc
Confidence 343344455688899999999999999999999999887 89999999999999 68999999999999998 68
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019734 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALC 206 (336)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~ 206 (336)
.+.+++.|..+...|++++|..+|.+|++. ..+..+.|+|.|.+. +.|..+|+++++. +.+.+...++..
T Consensus 103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~ 182 (250)
T COG3063 103 GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARL 182 (250)
T ss_pred cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence 999999999999999999999999999976 457899999999997 9999999999876 588899999999
Q ss_pred HhcCCCCccCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 019734 207 LHRGRGVDFNLQEAARWYLRAAEGGYV-RAMYNTSLCYSFGEGLPLSHRQARKWMKRA 263 (336)
Q Consensus 207 ~~~g~g~~~~~~~A~~~~~~a~~~~~~-~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a 263 (336)
... .+|+..|..++++-...+.. ..-..||.-..+..| |-..+..|=.+.
T Consensus 183 ~~~----~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~g---d~~~a~~Y~~qL 233 (250)
T COG3063 183 HYK----AGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLG---DRAAAQRYQAQL 233 (250)
T ss_pred HHh----cccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhc---cHHHHHHHHHHH
Confidence 888 89999999999998665433 334455555555444 555555544333
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-12 Score=117.33 Aligned_cols=258 Identities=13% Similarity=0.051 Sum_probs=206.5
Q ss_pred CChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHH
Q 019734 63 SLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAM 140 (336)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~ 140 (336)
..+.-+..++..++...++.+-..+....++..|-... -.-..+|-++..| +..+=+..=.+.++. ..+..|
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~-~~~~~ia~l~el~-----~~n~Lf~lsh~LV~~yP~~a~sW 315 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLP-CLPLHIACLYELG-----KSNKLFLLSHKLVDLYPSKALSW 315 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcc-hHHHHHHHHHHhc-----ccchHHHHHHHHHHhCCCCCcch
Confidence 44556678888999999999999999999999886433 3334577666664 333323233333443 468899
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC
Q 019734 141 VDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRG 212 (336)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g 212 (336)
+.+|..|...+...+|+.+|-|+... ....||..+|..|.. ++|+.+|.+|.+. |-..-.+.+|.-|..
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~--- 392 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR--- 392 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH---
Confidence 99999999999999999999998654 678999999999987 9999999999885 777788889988877
Q ss_pred CccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC-----HHHHHHHHHHhhc
Q 019734 213 VDFNLQEAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH-----GKAQLEHGLGLFT 281 (336)
Q Consensus 213 ~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~~-----~~a~~~lg~~~~~ 281 (336)
.++.+.|..+|..|. .+.|+-....+|.+... .+.+.+|..||+.++.. ++ .....|||.+|.+
T Consensus 393 -t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 393 -TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred -hccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 799999999999985 46899999999999865 33899999999999842 22 1236899999999
Q ss_pred cCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 282 EGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 282 ~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
.+.+++|+.+|++|+...+.++...-+..+.+.-.+..+.|.+...+-+-+.|
T Consensus 468 l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 99999999999999998877777666666667777888999988777665555
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.7e-12 Score=111.72 Aligned_cols=199 Identities=21% Similarity=0.116 Sum_probs=115.5
Q ss_pred HHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHH--HHcCCHHHHHHHHHHH
Q 019734 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKG--AARGSTLAMVDAGLMY 147 (336)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A--~~~~~~~a~~~lg~~~ 147 (336)
.+....|.+|++++|...|+..++..+. ...++|++|+.+.. .+++++|+.+|-+. +-+++.+.+++++.+|
T Consensus 495 nkgn~~f~ngd~dka~~~ykeal~ndas--c~ealfniglt~e~----~~~ldeald~f~klh~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 495 NKGNIAFANGDLDKAAEFYKEALNNDAS--CTEALFNIGLTAEA----LGNLDEALDCFLKLHAILLNNAEVLVQIANIY 568 (840)
T ss_pred cCCceeeecCcHHHHHHHHHHHHcCchH--HHHHHHHhcccHHH----hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333445555566555555555444322 45555666655555 35566666655542 3335555666666666
Q ss_pred hcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHH
Q 019734 148 WEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQE 219 (336)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~ 219 (336)
....++.+|++||.++... ++|..+..||.+|-+ .+|++|+-..-.- -+.+..-.||..|.. ..=.++
T Consensus 569 e~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid----tqf~ek 644 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID----TQFSEK 644 (840)
T ss_pred HHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh----hHHHHH
Confidence 5555666666666555433 555555666666555 4555555444332 234445555555554 455678
Q ss_pred HHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhcc
Q 019734 220 AARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTE 282 (336)
Q Consensus 220 A~~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~ 282 (336)
|+.||++|+ ++....-+..++.|+.+ .| ++.+|+..|+..-.. .+.+..-.|-.+.-..
T Consensus 645 ai~y~ekaaliqp~~~kwqlmiasc~rr-sg---nyqka~d~yk~~hrkfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 645 AINYFEKAALIQPNQSKWQLMIASCFRR-SG---NYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHh-cc---cHHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence 999999984 44566677788888865 33 999999999987664 4445444444433333
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.6e-12 Score=111.88 Aligned_cols=206 Identities=14% Similarity=-0.002 Sum_probs=150.6
Q ss_pred CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHH
Q 019734 119 KNLDKALDSFLKGAAR------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVK 186 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~ 186 (336)
...+.++..+.+++.. +.+..++.+|.+|...|+.++|+..|+++++. +++.+++++|.++.. ++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3567788888888853 24678999999999999999999999999865 789999999999998 99999
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019734 187 LLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 264 (336)
Q Consensus 187 ~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~ 264 (336)
.|+++++. ++..+++++|.++.. .+++++|+..|++++.......+..+...+... ..+.++|+..+.+++
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~---~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYY----GGRYELAQDDLLAFYQDDPNDPYRALWLYLAES---KLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc---cCCHHHHHHHHHHHH
Confidence 99999875 688999999999988 799999999999998764333222222222122 238999999998887
Q ss_pred HcCCHHHHHHHHHHhhccCCHHH--HHHHHHHHH----HcC--cHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 265 DCGHGKAQLEHGLGLFTEGEMMK--AVVYLELAT----RAG--ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 265 ~~~~~~a~~~lg~~~~~~~~~~~--A~~~~~~A~----~~~--~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
...++..+. .+.++...|+..+ ++..+.+++ +.+ ..++..+++.++. ..++.++|+..+++....+|
T Consensus 193 ~~~~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~--~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 EKLDKEQWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYL--SLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hhCCccccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhCC
Confidence 654443332 3454555565533 333333332 222 2345566666555 56678999999999888776
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-11 Score=110.50 Aligned_cols=226 Identities=15% Similarity=0.106 Sum_probs=182.8
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM 146 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~ 146 (336)
+..+.-+|-.|+.-.|...+....+-.+. +..-+..+|.+|.+ ..+.++-...|.+|..+ .+++.+++.|.+
T Consensus 330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~~~--~~~lyI~~a~~y~d----~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm 403 (606)
T KOG0547|consen 330 LLRGTFHFLKGDSLGAQEDFDAAIKLDPA--FNSLYIKRAAAYAD----ENQSEKMWKDFNKAEDLDPENPDVYYHRGQM 403 (606)
T ss_pred HHhhhhhhhcCCchhhhhhHHHHHhcCcc--cchHHHHHHHHHhh----hhccHHHHHHHHHHHhcCCCCCchhHhHHHH
Confidence 33444457778888888777777777655 33338889999999 68999999999999998 489999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHH
Q 019734 147 YWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQ 218 (336)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~ 218 (336)
++-.+++++|+.-|++++.. .++-++..++.+.+. +++...|+.+... .-++.+...|.++.. .++++
T Consensus 404 ~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD----qqqFd 479 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD----QQQFD 479 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh----HHhHH
Confidence 99999999999999999877 556666777766666 8899999999885 688999999999998 89999
Q ss_pred HHHHHHHHHHHCCC--------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhccCCHHHH
Q 019734 219 EAARWYLRAAEGGY--------VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKA 288 (336)
Q Consensus 219 ~A~~~~~~a~~~~~--------~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~~~~~A 288 (336)
+|++.|.+|++... +..+.+-|.+..+ -.+|+.+|...+++|++.++ ..++..||.+...+|+.++|
T Consensus 480 ~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q---wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 480 KAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ---WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEA 556 (606)
T ss_pred HHHHHHHHHHhhccccccccccchhhhhhhHhhhc---hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999987643 3334444444444 24599999999999999755 56778999999999999999
Q ss_pred HHHHHHHHHcCcHHHHHHH
Q 019734 289 VVYLELATRAGETAADHVK 307 (336)
Q Consensus 289 ~~~~~~A~~~~~~~a~~~~ 307 (336)
+.+|++++..-....+..-
T Consensus 557 ielFEksa~lArt~~E~~~ 575 (606)
T KOG0547|consen 557 IELFEKSAQLARTESEMVH 575 (606)
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 9999999987555444433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-11 Score=113.87 Aligned_cols=216 Identities=18% Similarity=0.134 Sum_probs=166.0
Q ss_pred HHHHhcCCChhHHhhhHHHHHHHHHhCC-----CC-CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-----C--C
Q 019734 70 NKIAASFTLPQLRAASLVCKSWNDALRP-----LR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----G--S 136 (336)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-----~--~ 136 (336)
..+......|+++.|+.+++..++...+ .. -+..+..+|.+|.. .+.+.+|+..|++|+.. | |
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~----~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS----LGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444556889999999999999988432 11 23344458999988 68999999999999863 2 3
Q ss_pred ---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHH----HHHHHHHHHHHHc-----
Q 019734 137 ---TLAMVDAGLMYWEMDKKEAAISLYRQAAVL-------GD---PAGQFNLGISYLQ----EEAVKLLYQASIA----- 194 (336)
Q Consensus 137 ---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~~~~----~~A~~~~~ka~~~----- 194 (336)
+..+.+|+.+|...|++++|..++.+|++. .+ +..+.+++.++.. ++|+.+|+++++.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 357889999999999999999999999743 22 3455667777666 9999999988652
Q ss_pred --CC---HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCcccHHHHHHH
Q 019734 195 --GH---VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----------GYVRAMYNTSLCYSFGEGLPLSHRQARKW 259 (336)
Q Consensus 195 --~~---~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~~~g~~~~~~~A~~~ 259 (336)
.+ +....+||.+|.. .+++++|.++|++|+.. +......+||..|.... ++.+|.+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~----~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k----~~~~a~~l 431 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLK----MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK----KYEEAEQL 431 (508)
T ss_pred cccchHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc----ccchHHHH
Confidence 22 4567899999998 89999999999999753 24677889999997654 45545555
Q ss_pred HHHH------HHcCC---HHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 260 MKRA------ADCGH---GKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 260 ~~~a------~~~~~---~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
|.++ +..++ ...+.||+.+|..+|++++|.++.+++++
T Consensus 432 ~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 432 FEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5544 44444 45678999999999999999999999885
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=116.05 Aligned_cols=209 Identities=16% Similarity=0.064 Sum_probs=103.8
Q ss_pred hcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCC
Q 019734 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDK 152 (336)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~ 152 (336)
-....++++.|...|.+.+...+. ++..+..++.++. .+++++|+..++++.+. +++..+..+..++...++
T Consensus 53 La~~~~~~~~A~~ay~~l~~~~~~--~~~~~~~l~~l~~-----~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 125 (280)
T PF13429_consen 53 LAWSLGDYDEAIEAYEKLLASDKA--NPQDYERLIQLLQ-----DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGD 125 (280)
T ss_dssp ------------------------------------------------------------------------H-HHHTT-
T ss_pred cccccccccccccccccccccccc--ccccccccccccc-----cccccccccccccccccccccchhhHHHHHHHHHhH
Confidence 345678999999889988877555 5666666777643 47999999999988775 567777788888999999
Q ss_pred HHHHHHHHHHHHHc----CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHH
Q 019734 153 KEAAISLYRQAAVL----GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAAR 222 (336)
Q Consensus 153 ~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~ 222 (336)
++++...+.++... .++..++.+|.++.. ++|+.+|+++++. +++.+...++.++.. .++.+++..
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~----~~~~~~~~~ 201 (280)
T PF13429_consen 126 YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLID----MGDYDEARE 201 (280)
T ss_dssp HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT----TCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----CCChHHHHH
Confidence 99999999997643 577889999999998 9999999999875 688999999999987 788888777
Q ss_pred HHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 223 WYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD--CGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 223 ~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
.++.... +.++..+..+|.+|... +++++|+.+|+++.. .+++.....+|.++...|+.++|..+++++.+
T Consensus 202 ~l~~~~~~~~~~~~~~~~la~~~~~l----g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 202 ALKRLLKAAPDDPDLWDALAAAYLQL----GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHH-HTSCCHCHHHHHHHHHH----T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHCcCHHHHHHHHHHHhccc----ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7766533 46777788899999753 399999999999988 47788999999999999999999999999875
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4e-10 Score=108.67 Aligned_cols=247 Identities=14% Similarity=0.086 Sum_probs=176.7
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
.++-.|...|..|++++|..++....+..|. ++.+++.||.+|.+ .||.+++..++-.|+-+ ++.+-|..++
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEq----rGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQ----RGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHH----cccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 4578888899999999999999999999988 89999999999999 58999999999998877 5789999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH-----------------------------------------
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----------------------------------------- 181 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----------------------------------------- 181 (336)
......|..++|+-+|.+|++. .+.+-.+....+|..
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999976 344555555555553
Q ss_pred --HHHHHHHHHHHHcC----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHH-----------------------------
Q 019734 182 --EEAVKLLYQASIAG----HVRAQYQLALCLHRGRGVDFNLQEAARWYLR----------------------------- 226 (336)
Q Consensus 182 --~~A~~~~~ka~~~~----~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~----------------------------- 226 (336)
+.|++.++.++... ..+-...++.+|.. .+.+++|......
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~----~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLK----NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHH----hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence 44444444443311 00111112222211 1111111111100
Q ss_pred --------------------------------HHH-----CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc---
Q 019734 227 --------------------------------AAE-----GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--- 266 (336)
Q Consensus 227 --------------------------------a~~-----~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--- 266 (336)
..+ ..+++-++.++.+|..-. .+++|+.+|......
T Consensus 371 ~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~----~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 371 GKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIG----KYKEALRLLSPITNREGY 446 (895)
T ss_pred CCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcc----cHHHHHHHHHHHhcCccc
Confidence 000 124566778888886533 899999999999874
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc--CcHHHHHHHHHHHhhcChhcHHHHHHHHHHh
Q 019734 267 GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQLSATSRDRAMLVVDSW 329 (336)
Q Consensus 267 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 329 (336)
++...++.+|.||...|.+++|+.+|++++.. ++.++...+..++..+ +++++|.+.+..+
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~--g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQL--GNHEKALETLEQI 509 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhc--CCHHHHHHHHhcc
Confidence 45678899999999999999999999999976 5667777777776654 4556776665553
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.9e-10 Score=94.88 Aligned_cols=255 Identities=15% Similarity=0.063 Sum_probs=194.4
Q ss_pred ChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC------CH
Q 019734 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG------ST 137 (336)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~------~~ 137 (336)
+|...++... .+-+.+-++|++++...++..+. ..+++..||.+|.. .|..++|+..-...++.. -.
T Consensus 35 lsr~Yv~GlN-fLLs~Q~dKAvdlF~e~l~~d~~--t~e~~ltLGnLfRs----RGEvDRAIRiHQ~L~~spdlT~~qr~ 107 (389)
T COG2956 35 LSRDYVKGLN-FLLSNQPDKAVDLFLEMLQEDPE--TFEAHLTLGNLFRS----RGEVDRAIRIHQTLLESPDLTFEQRL 107 (389)
T ss_pred ccHHHHhHHH-HHhhcCcchHHHHHHHHHhcCch--hhHHHHHHHHHHHh----cchHHHHHHHHHHHhcCCCCchHHHH
Confidence 4444444433 34556667888888888886655 78999999999999 589999999877766652 24
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHH----HHHHHHHHHHHHcCCHH-------HHHHHH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGD--PAGQFNLGISYLQ----EEAVKLLYQASIAGHVR-------AQYQLA 204 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~~~-------a~~~lg 204 (336)
.|.+.||.-|...|-++.|...|...++.+. ..|.-.|-.+|.. ++|+..=++.+..+.-. -+..|+
T Consensus 108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 108 LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 6889999999999999999999999998643 5788889999987 89999888887764322 245566
Q ss_pred HHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHh
Q 019734 205 LCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGL 279 (336)
Q Consensus 205 ~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~ 279 (336)
..+.. ..|.++|+.++.||++ +..+.+-..+|.++.. .| ++.+|++.+++.+++++ +.....|-.+|
T Consensus 188 q~~~~----~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-~g---~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 188 QQALA----SSDVDRARELLKKALQADKKCVRASIILGRVELA-KG---DYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred HHHhh----hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-cc---chHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 65555 6899999999999965 4678888999999964 33 99999999999998866 45567888999
Q ss_pred hccCCHHHHHHHHHHHHHcC-cHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 280 FTEGEMMKAVVYLELATRAG-ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 280 ~~~~~~~~A~~~~~~A~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
...|+.++...|+.++.+.. ..++...+..+.... .-.+.|.....+-+..+|+
T Consensus 260 ~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~--~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 260 AQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQ--EGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHh--hChHHHHHHHHHHHhhCCc
Confidence 99999999999999999864 334444444433332 3456666666666666664
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-09 Score=100.55 Aligned_cols=124 Identities=12% Similarity=0.048 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHH--HHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCH
Q 019734 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAM--YNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHG 269 (336)
Q Consensus 196 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~--~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~ 269 (336)
++.....++..+.. .+++++|...++++++. ++.... ......... +.+.+++...++++.+. +++
T Consensus 262 ~~~l~~~~a~~l~~----~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~----~~~~~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 262 NIALKIALAEHLID----CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK----PEDNEKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred CHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC----CCChHHHHHHHHHHHHhCCCCh
Confidence 66778888888877 79999999999999874 333211 111111212 34788999999999875 667
Q ss_pred --HHHHHHHHHhhccCCHHHHHHHHHH--HHHcC-cHHHHHHHHHHHhhcChhcHHHHHHHHHHh
Q 019734 270 --KAQLEHGLGLFTEGEMMKAVVYLEL--ATRAG-ETAADHVKNVILQQLSATSRDRAMLVVDSW 329 (336)
Q Consensus 270 --~a~~~lg~~~~~~~~~~~A~~~~~~--A~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 329 (336)
.....+|++++..|++++|..+|++ +++.. ++.....++.++..+ ++.++|.++.++-
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~--g~~~~A~~~~~~~ 396 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA--GDKAEAAAMRQDS 396 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Confidence 6677999999999999999999995 65543 333344556555554 4566676666654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-09 Score=98.98 Aligned_cols=218 Identities=15% Similarity=0.097 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG 176 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 176 (336)
+.++...|.-++. .+|.-.|..-|.+++.+. +..-+..+|.+|....+.++....|.+|.+. .++..++..|
T Consensus 326 A~al~~~gtF~fL----~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRg 401 (606)
T KOG0547|consen 326 AEALLLRGTFHFL----KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRG 401 (606)
T ss_pred HHHHHHhhhhhhh----cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHH
Confidence 5556556665554 789999999999999984 4444888999999999999999999999765 7899999999
Q ss_pred HHHHH----HHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC
Q 019734 177 ISYLQ----EEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEG 248 (336)
Q Consensus 177 ~~~~~----~~A~~~~~ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g 248 (336)
.++.- ++|+.-|++++.++ +.-++..++.+.+. ...++++...|+.+... .-++.+...|.++..
T Consensus 402 Qm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr----~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD--- 474 (606)
T KOG0547|consen 402 QMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR----QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD--- 474 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh---
Confidence 99877 99999999998875 56677777777666 67899999999999764 678888899999965
Q ss_pred CcccHHHHHHHHHHHHHcCCH--------HHHHHHHHHhh-ccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcH
Q 019734 249 LPLSHRQARKWMKRAADCGHG--------KAQLEHGLGLF-TEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSR 319 (336)
Q Consensus 249 ~~~~~~~A~~~~~~a~~~~~~--------~a~~~lg~~~~-~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~ 319 (336)
.+++++|++.|.+|+++.+. ..+.+-|.+.. -.+|+.+|...+++|++.++.--...-+.....+..++.
T Consensus 475 -qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i 553 (606)
T KOG0547|consen 475 -QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKI 553 (606)
T ss_pred -HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhH
Confidence 45999999999999986432 22333333222 258999999999999999876555555666667778888
Q ss_pred HHHHHHHHHhh
Q 019734 320 DRAMLVVDSWR 330 (336)
Q Consensus 320 ~~a~~~~~~~~ 330 (336)
++|++++.+-.
T Consensus 554 ~eAielFEksa 564 (606)
T KOG0547|consen 554 DEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHH
Confidence 99988876543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-11 Score=108.55 Aligned_cols=245 Identities=19% Similarity=0.113 Sum_probs=152.0
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHH--------HcCCH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPL--REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA--------ARGST 137 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~--------~~~~~ 137 (336)
+......++..|+.+..+..++..++...+. --...+-.||.+|+. .+|+++|++|-.--+ ++|.+
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfy----L~DY~kAl~yH~hDltlar~lgdklGEA 95 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFY----LKDYEKALKYHTHDLTLARLLGDKLGEA 95 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhh----HhhHHHHHhhhhhhHHHHHHhcchhccc
Confidence 3445556788899999988888888776542 123456678888877 689999998865322 12567
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHH----HcC----CHHHHHHHHHHHHH------------------------HHHH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAA----VLG----DPAGQFNLGISYLQ------------------------EEAV 185 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~----~~~----~~~a~~~Lg~~~~~------------------------~~A~ 185 (336)
.+.-+||..+...|.+++|+.+..+-+ +.| ...|+|+||.+|.. +.|+
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av 175 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV 175 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence 788899999999999999999977754 334 46799999999987 4455
Q ss_pred HHHHHHHH----cCC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH----HCCC----HHHHHHHHHHHHcCCCC
Q 019734 186 KLLYQASI----AGH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAA----EGGY----VRAMYNTSLCYSFGEGL 249 (336)
Q Consensus 186 ~~~~ka~~----~~~----~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~----~~~~----~~a~~~lg~~~~~~~g~ 249 (336)
++|+.-++ .++ ..++-+||..|+- .+|++.|+.+-+.-+ +-|+ -.|+.+||.||..
T Consensus 176 ~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYl----LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif---- 247 (639)
T KOG1130|consen 176 KFYMENLELSEKLGDRLAQGRAYGNLGNTYYL----LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF---- 247 (639)
T ss_pred HHHHHHHHHHHHhhhHHhhcchhcccCceeee----eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh----
Confidence 55543332 122 2344555555554 667777766554322 2233 3455666666643
Q ss_pred cccHHHHHHHHHHHHH----cCC----HHHHHHHHHHhhccCCHHHHHHHHHHHHH--------cCcHHHHHHHHHHHhh
Q 019734 250 PLSHRQARKWMKRAAD----CGH----GKAQLEHGLGLFTEGEMMKAVVYLELATR--------AGETAADHVKNVILQQ 313 (336)
Q Consensus 250 ~~~~~~A~~~~~~a~~----~~~----~~a~~~lg~~~~~~~~~~~A~~~~~~A~~--------~~~~~a~~~~~~~~~~ 313 (336)
..+++.|+++|++.+. .|+ +..+|.||..|+-..++++|+.|+.+=+. .|...++..++..+..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 2266677777666543 233 33456677766666677777766665321 2344455555544444
Q ss_pred cChhcHHHHHHHH
Q 019734 314 LSATSRDRAMLVV 326 (336)
Q Consensus 314 ~~~~~~~~a~~~~ 326 (336)
+ ++.++|+..+
T Consensus 328 l--g~h~kAl~fa 338 (639)
T KOG1130|consen 328 L--GEHRKALYFA 338 (639)
T ss_pred h--hhHHHHHHHH
Confidence 3 2334444433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-09 Score=108.49 Aligned_cols=262 Identities=9% Similarity=-0.030 Sum_probs=181.1
Q ss_pred ChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHH
Q 019734 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMV 141 (336)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~ 141 (336)
.+.....++...+..|++..|...+.+.++..|. ++.+.+.+..++.. .++.++|+.++++++... +..+..
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~--~~~av~dll~l~~~----~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPL--QSGQVDDWLQIAGW----AGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCcc--chhhHHHHHHHHHH----cCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 3446677888889999999999999999999877 43333366666655 489999999999999654 445555
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCcc
Q 019734 142 DAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDF 215 (336)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~ 215 (336)
.+|.++...|++++|+..|+++++. +++.++..|+.+|.. ++|+..++++....-....+ ++..|.... .+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~--~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA--TD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh--cc
Confidence 6688999999999999999999865 788999888888877 88888888887654222222 444443211 45
Q ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC---------------------------------------------
Q 019734 216 NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEG--------------------------------------------- 248 (336)
Q Consensus 216 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g--------------------------------------------- 248 (336)
+..+|+..|+++++. ++.+....+...+.....
T Consensus 184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 555588888876542 222222222222110000
Q ss_pred ----------------------------------------CcccHHHHHHHHHHHHHcC---CHHHHHHHHHHhhccCCH
Q 019734 249 ----------------------------------------LPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGEM 285 (336)
Q Consensus 249 ----------------------------------------~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~ 285 (336)
..+++.+++..|+..-..+ +..+...+|..|...+++
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 0113444444444443322 344567889999999999
Q ss_pred HHHHHHHHHHHHcC------cHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 286 MKAVVYLELATRAG------ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 286 ~~A~~~~~~A~~~~------~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
++|...|+.++... +.+.....+.++.++..++.++|..+++.+.+..|
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 99999999998753 22333346788999999999999999999998666
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.7e-09 Score=93.27 Aligned_cols=199 Identities=10% Similarity=-0.082 Sum_probs=110.0
Q ss_pred CChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCH-
Q 019734 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKK- 153 (336)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~- 153 (336)
..+..++|..++.+.++..|+ +..+++..|.++..- ..++++++.++++++.. .+..+++..+.++...++.
T Consensus 49 ~~e~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L---~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG--NYTVWHFRRLCLEAL---DADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHc---chhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence 456666666666666666655 666666666666551 12466667776666655 3556666666666555542
Q ss_pred -HHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcC---CCCccCHHHHH
Q 019734 154 -EAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRG---RGVDFNLQEAA 221 (336)
Q Consensus 154 -~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g---~g~~~~~~~A~ 221 (336)
++++.++.++++. .+..++.+.|.++.. +++++++.++++. .+..|+++.|.++... .+.....+.++
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 5566666666543 556666666666655 5666666666553 3556666666655431 01112234455
Q ss_pred HHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhh
Q 019734 222 RWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLF 280 (336)
Q Consensus 222 ~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~ 280 (336)
.+..+++ .+.+..++++++.++...........+|...+.+++.. ....+.-.|+.+|.
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 5555554 33566666666666644110012334455555555442 23444455555554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-09 Score=92.16 Aligned_cols=206 Identities=18% Similarity=0.100 Sum_probs=160.0
Q ss_pred cCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHH----HHHH
Q 019734 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD------PAGQFNLGISYLQ----EEAV 185 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~~~~----~~A~ 185 (336)
..+.++|+..|-..++.+ ..++.+.||.++...|+.++||..-+-.++.-+ .-|.+.||.=|+. +.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 578999999999998874 578999999999999999999999887776532 3577889999988 9999
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHH-------HHHHHHHHHcCCCCcccHHHH
Q 019734 186 KLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRA-------MYNTSLCYSFGEGLPLSHRQA 256 (336)
Q Consensus 186 ~~~~ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a-------~~~lg~~~~~~~g~~~~~~~A 256 (336)
..|...++.+ -..|.-.|-.+|.. .+++.+|++.-++.+..+.-.- +..|+..+.. ..+.++|
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~----treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~----~~~~d~A 199 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQA----TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA----SSDVDRA 199 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh----hhhHHHH
Confidence 9999999864 45789999999998 8999999999998877654333 3344444432 4599999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHH---HHHHHHHHHhhcChhcHHHHHHHHHHhhc
Q 019734 257 RKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA---ADHVKNVILQQLSATSRDRAMLVVDSWRA 331 (336)
Q Consensus 257 ~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~---a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 331 (336)
+.++.+|+.. ....+-..+|.++...|++++|++.|+...+.++.- ....+...+.++ ++.+..........+
T Consensus 200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l--g~~~~~~~fL~~~~~ 277 (389)
T COG2956 200 RELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL--GKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHH
Confidence 9999999875 456777999999999999999999999999987643 333333333333 344445555555544
Q ss_pred CC
Q 019734 332 MP 333 (336)
Q Consensus 332 ~~ 333 (336)
.+
T Consensus 278 ~~ 279 (389)
T COG2956 278 TN 279 (389)
T ss_pred cc
Confidence 43
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-09 Score=101.11 Aligned_cols=218 Identities=17% Similarity=0.097 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-------CCH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHc----
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------GST---LAMVDAGLMYWEMDKKEAAISLYRQAAVL---- 166 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-------~~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---- 166 (336)
...+..||.+|.. .+++++|+.+++.|++. .++ ..+..+|.+|...+++.+|+..|++|+..
T Consensus 199 ~~~~~~La~~y~~----~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 199 LRTLRNLAEMYAV----QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred HHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4466679999998 69999999999999976 343 23445999999999999999999999842
Q ss_pred ---CC---HHHHHHHHHHHHH----HHHHHHHHHHHHc-------C---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 019734 167 ---GD---PAGQFNLGISYLQ----EEAVKLLYQASIA-------G---HVRAQYQLALCLHRGRGVDFNLQEAARWYLR 226 (336)
Q Consensus 167 ---~~---~~a~~~Lg~~~~~----~~A~~~~~ka~~~-------~---~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~ 226 (336)
.+ +..+.+||.+|.. ++|..++++|++. . ....+.+++.++.. .+++++|+.+|++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~----~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS----MNEYEEAKKLLQK 350 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH----hcchhHHHHHHHH
Confidence 22 4678999999988 8888888887652 1 23456788888887 8899999999999
Q ss_pred HHHC-------CC---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----C-----CHHHHHHHHHHhhccCCHH
Q 019734 227 AAEG-------GY---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----G-----HGKAQLEHGLGLFTEGEMM 286 (336)
Q Consensus 227 a~~~-------~~---~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-----~-----~~~a~~~lg~~~~~~~~~~ 286 (336)
++.. .+ +....+||.+|.. .+++++|..+|++|+.. + ...+..+||..|.+.+++.
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~----~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~ 426 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLK----MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE 426 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc
Confidence 8642 22 4557799999975 33999999999999873 1 2456689999999999999
Q ss_pred HHHHHHHHHHHc------CcHHHH-HHHHHHHhhcChhcHHHHHHHHHHhh
Q 019734 287 KAVVYLELATRA------GETAAD-HVKNVILQQLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 287 ~A~~~~~~A~~~------~~~~a~-~~~~~~~~~~~~~~~~~a~~~~~~~~ 330 (336)
+|...|.++... ++++.. .+.+....+...++.++|.++...+.
T Consensus 427 ~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 427 EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 998888888653 232222 22333444445566777777665543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.6e-10 Score=103.07 Aligned_cols=208 Identities=15% Similarity=0.096 Sum_probs=155.4
Q ss_pred HHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 019734 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYL 180 (336)
Q Consensus 105 ~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~ 180 (336)
|.-|..+.. .|++.+|+-.|+.|+.. .|.+||..||.++.+..+-..||..++++++. ++.+++..||..|.
T Consensus 289 f~eG~~lm~----nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 289 FKEGCNLMK----NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYT 364 (579)
T ss_pred HHHHHHHHh----cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence 346666666 58899999999999988 58999999999999999999999999999866 79999999999998
Q ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCC-----C-C-ccCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHc
Q 019734 181 Q----EEAVKLLYQASIAGHVRAQYQLALCLHRGR-----G-V-DFNLQEAARWYLRAAE-G---GYVRAMYNTSLCYSF 245 (336)
Q Consensus 181 ~----~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~-----g-~-~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~ 245 (336)
. .+|+.++.+=+....+..+.-.+. ..+. + + ......-.+.|..++. . .+++.+..||.+|..
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~--~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKPKYVHLVSAG--ENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCccchhccccC--ccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 8 889999988776544433222211 1111 0 0 1112223344555543 2 489999999999964
Q ss_pred CCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc--CcHHHHHHHHHHHhhcChhcHHH
Q 019734 246 GEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQLSATSRDR 321 (336)
Q Consensus 246 ~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~~~~~~~~~~~~~~~~ 321 (336)
.+++++|+.+|+.|+.. .+...+..||-++-...+.++|+..|.+|+.+ +...+.+++++.. +.-+...+
T Consensus 443 ----s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~--mNlG~ykE 516 (579)
T KOG1125|consen 443 ----SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC--MNLGAYKE 516 (579)
T ss_pred ----chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh--hhhhhHHH
Confidence 44999999999999975 55667899999999999999999999999987 4556666666553 44444444
Q ss_pred HHH
Q 019734 322 AML 324 (336)
Q Consensus 322 a~~ 324 (336)
|..
T Consensus 517 A~~ 519 (579)
T KOG1125|consen 517 AVK 519 (579)
T ss_pred HHH
Confidence 444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-08 Score=94.01 Aligned_cols=243 Identities=12% Similarity=0.027 Sum_probs=155.9
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCC-CCHHHHHHHHHHH-hcCCCCcCCHHHHHHHHHHHHHcC--CHHHH-HHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPL-REAMVLLRWGKRF-KHGRGVRKNLDKALDSFLKGAARG--STLAM-VDA 143 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~a~~~lg~~~-~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~-~~l 143 (336)
+..+...+..|++.+|. +.+...++. +++...+.++-.. .. .++++.|..+|+++.+.. +..+. ...
T Consensus 88 ~~~gl~a~~eGd~~~A~----k~l~~~~~~~~~p~l~~llaA~aA~~----~g~~~~A~~~l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 88 TEQALLKLAEGDYQQVE----KLMTRNADHAEQPVVNYLLAAEAAQQ----RGDEARANQHLERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHhCCCHHHHH----HHHHHHHhcccchHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 44555555667777664 333333332 2344444443333 33 357777777777776642 21122 233
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHH------------------------
Q 019734 144 GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASI------------------------ 193 (336)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~------------------------ 193 (336)
+.++...|++++|+..+++..+. +++.+...++.+|.. ++|+..+.+..+
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777776543 566777666666665 333322222211
Q ss_pred --------------------cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCccc
Q 019734 194 --------------------AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSFGEGLPLS 252 (336)
Q Consensus 194 --------------------~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~g~~~~ 252 (336)
.+++.+...++..+.. .++.++|...++++.+.. ++......+.+. .++
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~------~~~ 309 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE----CDDHDTAQQIILDGLKRQYDERLVLLIPRLK------TNN 309 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCHHHHHHHhhcc------CCC
Confidence 2356677777888777 799999999999998753 443333333332 238
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHH-HHHHHHHhhcChhcHHHHHHHHHHh
Q 019734 253 HRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD-HVKNVILQQLSATSRDRAMLVVDSW 329 (336)
Q Consensus 253 ~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~-~~~~~~~~~~~~~~~~~a~~~~~~~ 329 (336)
.++++..+++..+. +++...+.+|.++...+++++|..+|+++++..+.... ..+..++... ++.++|.++.++-
T Consensus 310 ~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~--g~~~~A~~~~~~~ 387 (398)
T PRK10747 310 PEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRL--HKPEEAAAMRRDG 387 (398)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Confidence 89999999988875 67888899999999999999999999999998655443 5666666654 4567777777665
Q ss_pred hc
Q 019734 330 RA 331 (336)
Q Consensus 330 ~~ 331 (336)
..
T Consensus 388 l~ 389 (398)
T PRK10747 388 LM 389 (398)
T ss_pred Hh
Confidence 43
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-08 Score=100.65 Aligned_cols=254 Identities=9% Similarity=-0.080 Sum_probs=164.6
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMY 147 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~ 147 (336)
+..+......|++.+|+.+++++++..|+ ++.+++.|+.+|.. .++.++|+..++++.... .......++.++
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~dP~--n~~~l~gLa~~y~~----~~q~~eAl~~l~~l~~~dp~~~~~l~layL~ 179 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKDPT--NPDLISGMIMTQAD----AGRGGVVLKQATELAERDPTVQNYMTLSYLN 179 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhh----cCCHHHHHHHHHHhcccCcchHHHHHHHHHH
Confidence 33444556779999999999999999888 68888888888877 588999999999988763 222223444455
Q ss_pred hcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH--------------------------------------------
Q 019734 148 WEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ-------------------------------------------- 181 (336)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~-------------------------------------------- 181 (336)
...++..+|+..|+++++. ++.+.+..+..++..
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccccc
Confidence 4456666699999988754 455555444443333
Q ss_pred -------------------------------------------------HHHHHHHHHHHHcC---CHHHHHHHHHHHhc
Q 019734 182 -------------------------------------------------EEAVKLLYQASIAG---HVRAQYQLALCLHR 209 (336)
Q Consensus 182 -------------------------------------------------~~A~~~~~ka~~~~---~~~a~~~lg~~~~~ 209 (336)
.+++..|+..-..+ .+-+...+|..|..
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 22222222221111 11223334444443
Q ss_pred CCCCccCHHHHHHHHHHHHHCC---------------------------------------------------------C
Q 019734 210 GRGVDFNLQEAARWYLRAAEGG---------------------------------------------------------Y 232 (336)
Q Consensus 210 g~g~~~~~~~A~~~~~~a~~~~---------------------------------------------------------~ 232 (336)
.+.+.+|+..|+.++... .
T Consensus 340 ----~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 340 ----RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred ----cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 344455555554432210 1
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHH
Q 019734 233 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVI 310 (336)
Q Consensus 233 ~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~ 310 (336)
..+...++.++... ++..+|.+.+++.+.. +++.....++.++...|.+.+|..+++.+....+.+.....+..
T Consensus 416 ~~~~~l~a~~~~~~----gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 416 IEGQTLLVQSLVAL----NDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred HHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 23344445544432 2788888888888764 67777888888899999999999999887777666666666777
Q ss_pred HhhcChhcHHHHHHHHHHhhcCCCCC
Q 019734 311 LQQLSATSRDRAMLVVDSWRAMPSLH 336 (336)
Q Consensus 311 ~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (336)
...+...+.++|+.+.+.+....|.+
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 77777788888888888888888864
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-09 Score=92.95 Aligned_cols=169 Identities=15% Similarity=0.033 Sum_probs=104.4
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCH--
Q 019734 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GST---LAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDP-- 169 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~-- 169 (336)
..+..++.+|..+.. .+++++|+..|++++.. +++ .+++.+|.++...|++++|+..|+++++. +++
T Consensus 31 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 31 WPAEELYEEAKEALD----SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 356777777777776 57788888888877765 222 56777888888888888888888887754 333
Q ss_pred -HHHHHHHHHHHH------------HHHHHHHHHHHHc--CCHHH---HHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC
Q 019734 170 -AGQFNLGISYLQ------------EEAVKLLYQASIA--GHVRA---QYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 231 (336)
Q Consensus 170 -~a~~~Lg~~~~~------------~~A~~~~~ka~~~--~~~~a---~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~ 231 (336)
.+++.+|.++.. ++|+..|+++++. ++..+ ...++.++..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~---------------------- 164 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR---------------------- 164 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH----------------------
Confidence 367777777752 4455555555443 12111 1111111100
Q ss_pred CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 232 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----HGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 232 ~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
.......+|.+|... +++.+|+.+|++++... .+.+++.+|.++...|++++|..+++....
T Consensus 165 ~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 165 LAGKELYVARFYLKR----GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 011234566666542 27778888888877641 246777888888888888888877766544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.1e-08 Score=100.23 Aligned_cols=241 Identities=9% Similarity=-0.071 Sum_probs=124.9
Q ss_pred CChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCH
Q 019734 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKK 153 (336)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~ 153 (336)
..|++++|..++....+.... ++...+..|-..|.. .+++++|+..|+.....+ +...+..|-..|...|+.
T Consensus 484 k~G~vd~A~~vf~eM~~~Gv~-PdvvTynaLI~gy~k----~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 484 KSGKVDAMFEVFHEMVNAGVE-ANVHTFGALIDGCAR----AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 445555555444444433221 345555555555555 356666666666655443 445555666666666666
Q ss_pred HHHHHHHHHHHHc-----CCHHHHHHHHHHHHH----HHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHH
Q 019734 154 EAAISLYRQAAVL-----GDPAGQFNLGISYLQ----EEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQEAA 221 (336)
Q Consensus 154 ~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~---~~~a~~~lg~~~~~g~g~~~~~~~A~ 221 (336)
++|...|.+.... .+...+..|-..|.. ++|.+.|++..+.+ +...+..+...|.. .+++++|.
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k----~G~~deAl 634 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ----KGDWDFAL 634 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHH
Confidence 6666666655431 233444444444444 66666666665543 34455555555554 45666666
Q ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 019734 222 RWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGEMMKAVVYLELA 295 (336)
Q Consensus 222 ~~~~~a~~~~---~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~A 295 (336)
..|+.....| +...+..|...|.+ .++.++|.+.++...+.| +...+..|...|.+.|++++|...|++.
T Consensus 635 ~lf~eM~~~Gv~PD~~TynsLI~a~~k----~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 635 SIYDDMKKKGVKPDEVFFSALVDVAGH----AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6666554432 33444444444433 225666666666655543 2344555555566666666666666655
Q ss_pred HHcC-cHHHHHHHHHHHhhcChhcHHHHHHHHHHhh
Q 019734 296 TRAG-ETAADHVKNVILQQLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 296 ~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 330 (336)
...| .++...+...+......++.++|.++++++.
T Consensus 711 ~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4432 2233333333333444455555555555544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.1e-08 Score=98.41 Aligned_cols=246 Identities=11% Similarity=-0.024 Sum_probs=192.2
Q ss_pred hcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHh
Q 019734 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GSTLAMVDAGLMYW 148 (336)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-----~~~~a~~~lg~~~~ 148 (336)
.+...|++++|..++....+..-. ++...+..|-..|.. .+++++|...|+..... .+...+..|-..|.
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~-PD~vTYnsLI~a~~k----~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~ 590 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVK-PDRVVFNALISACGQ----SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 344778999998877776654332 467777777777777 58999999999988652 35677888888999
Q ss_pred cCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----HHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHH
Q 019734 149 EMDKKEAAISLYRQAAVLG---DPAGQFNLGISYLQ----EEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQ 218 (336)
Q Consensus 149 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~---~~~a~~~lg~~~~~g~g~~~~~~ 218 (336)
+.|++++|...|++..+.+ ++..+..+...|.. ++|+..|.+..+.| +...+..|...|.. .++++
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k----~G~~e 666 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH----AGDLD 666 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHH
Confidence 9999999999999998875 56777778878877 99999999988765 55677777777776 78999
Q ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHhhccCCHHHHHHHH
Q 019734 219 EAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---GHGKAQLEHGLGLFTEGEMMKAVVYL 292 (336)
Q Consensus 219 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~ 292 (336)
+|...++...+.+ +...+..|...|.+. ++.++|...|++.... -+...+..|...|.+.|++++|...|
T Consensus 667 eA~~l~~eM~k~G~~pd~~tynsLI~ay~k~----G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNA----KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999988765 677888888888653 3899999999988664 34667788888899999999999999
Q ss_pred HHHHHcC-cHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcC
Q 019734 293 ELATRAG-ETAADHVKNVILQQLSATSRDRAMLVVDSWRAM 332 (336)
Q Consensus 293 ~~A~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 332 (336)
++..+.| .++...+...+......++.+.|+.+..++++.
T Consensus 743 ~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 743 SEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 9988765 455555555555666677788888888887653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-08 Score=94.74 Aligned_cols=257 Identities=18% Similarity=0.058 Sum_probs=173.3
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGL 145 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~ 145 (336)
-.+..+......|+...|..+....++..++ +-+.++.--.+-.. ...++.|..+|.+|-.. +....++.-+.
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~pn--seeiwlaavKle~e----n~e~eraR~llakar~~sgTeRv~mKs~~ 659 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEANPN--SEEIWLAAVKLEFE----NDELERARDLLAKARSISGTERVWMKSAN 659 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC--cHHHHHHHHHHhhc----cccHHHHHHHHHHHhccCCcchhhHHHhH
Confidence 3466666667778888888888888888666 55555433333222 46788888888888665 67778888888
Q ss_pred HHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCH
Q 019734 146 MYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNL 217 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~ 217 (336)
+....++.++|+.+++.+++. .....+..+|.++.+ +.|...|..-+.. +...-+..|+.+-+. .++.
T Consensus 660 ~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk----~~~~ 735 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK----DGQL 735 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH----hcch
Confidence 888888999999999888876 667888888998887 7777777666553 455666666666655 4566
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHH-------------------------------
Q 019734 218 QEAARWYLRAAEGGYVRAMYNTSLCYSFG-EGLPLSHRQARKWMKRAAD------------------------------- 265 (336)
Q Consensus 218 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~~-~g~~~~~~~A~~~~~~a~~------------------------------- 265 (336)
.+|...+.++.-.+...+.+.|..+-... .| +.++|.....+|++
T Consensus 736 ~rAR~ildrarlkNPk~~~lwle~Ir~ElR~g---n~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkk 812 (913)
T KOG0495|consen 736 VRARSILDRARLKNPKNALLWLESIRMELRAG---NKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKK 812 (913)
T ss_pred hhHHHHHHHHHhcCCCcchhHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHh
Confidence 77777777664333333333333332221 22 55555555555554
Q ss_pred -cCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCCC
Q 019734 266 -CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 336 (336)
Q Consensus 266 -~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (336)
.+++.....+|.+++...++++|..||++|+..++.....+.-+....+..+..++-+++++...+-.|.|
T Consensus 813 ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 813 CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 23444568889999999999999999999998765444433333334444455555667888888888876
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-09 Score=91.50 Aligned_cols=193 Identities=8% Similarity=-0.037 Sum_probs=144.0
Q ss_pred ccccccCCCCCCCCCCCChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCcCCHHHHH
Q 019734 47 FSCSRSIKSTEGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKAL 125 (336)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~lg~~~~~g~g~~~~~~~A~ 125 (336)
..|+........+.....+...+..+...+..|++.+|...+...++..|+.. ...+++.+|.+|.. .+++++|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~----~~~~~~A~ 90 (235)
T TIGR03302 15 AGCSSKKKKEADPVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK----SGDYAEAI 90 (235)
T ss_pred hhccCCcccccCCcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh----cCCHHHHH
Confidence 45666522211223344556678888889999999999999999988877632 24688999999999 68999999
Q ss_pred HHHHHHHHc--CCH---HHHHHHHHHHhcC--------CCHHHHHHHHHHHHHc--CCHHHH---HHHHHHHHHHHHHHH
Q 019734 126 DSFLKGAAR--GST---LAMVDAGLMYWEM--------DKKEAAISLYRQAAVL--GDPAGQ---FNLGISYLQEEAVKL 187 (336)
Q Consensus 126 ~~~~~A~~~--~~~---~a~~~lg~~~~~~--------~~~~~A~~~~~~a~~~--~~~~a~---~~Lg~~~~~~~A~~~ 187 (336)
..|+++++. +++ .+++.+|.++... |++++|+..|+++++. ++..+. ..++.+..
T Consensus 91 ~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~------- 163 (235)
T TIGR03302 91 AAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN------- 163 (235)
T ss_pred HHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-------
Confidence 999999986 233 4799999999876 7899999999999865 444443 22222211
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHH
Q 019734 188 LYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKR 262 (336)
Q Consensus 188 ~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~ 262 (336)
......+.+|.+|.. .+++.+|+..|+++++. ..+.+++.+|.+|.... ++++|..+++.
T Consensus 164 -------~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg----~~~~A~~~~~~ 228 (235)
T TIGR03302 164 -------RLAGKELYVARFYLK----RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLG----LKDLAQDAAAV 228 (235)
T ss_pred -------HHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcC----CHHHHHHHHHH
Confidence 112334678888887 79999999999999764 24689999999997633 99999998887
Q ss_pred HHH
Q 019734 263 AAD 265 (336)
Q Consensus 263 a~~ 265 (336)
...
T Consensus 229 l~~ 231 (235)
T TIGR03302 229 LGA 231 (235)
T ss_pred HHh
Confidence 654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.7e-08 Score=88.51 Aligned_cols=212 Identities=10% Similarity=-0.109 Sum_probs=168.1
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH------HHHHHH
Q 019734 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD-KKEAAISLYRQAAVL--GDPAGQFNLGISYLQ------EEAVKL 187 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~------~~A~~~ 187 (336)
+..++|+..+.+++.. .+..++...|.++...+ ++++++.++.++++. ++..++++.+.++.. ++++.+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 5788999999999987 57889999999999988 689999999999865 788999999988875 567899
Q ss_pred HHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcC---CCCcccHHHHHHHH
Q 019734 188 LYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFG---EGLPLSHRQARKWM 260 (336)
Q Consensus 188 ~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~---~g~~~~~~~A~~~~ 260 (336)
+.++++. .+..|+.+.|.++.. .+++++++.++.++++ ..+..++++.+.++... .+.....++++.+.
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~l~~----l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWVLRT----LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 9999876 588999999999998 7889999999999976 57899999999988654 23334467899999
Q ss_pred HHHHHc--CCHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHcC--cHHHHHHHHHHHhhcC-hh--------------
Q 019734 261 KRAADC--GHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAG--ETAADHVKNVILQQLS-AT-------------- 317 (336)
Q Consensus 261 ~~a~~~--~~~~a~~~lg~~~~~----~~~~~~A~~~~~~A~~~~--~~~a~~~~~~~~~~~~-~~-------------- 317 (336)
.+++.. .+..+++.++.++.. .++..+|...+..++..+ ...|...+..++.... +.
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEEL 286 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccc
Confidence 999874 678889999998887 345677999999987754 4566666665554421 11
Q ss_pred -cHHHHHHHHHHhhcCCC
Q 019734 318 -SRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 318 -~~~~a~~~~~~~~~~~~ 334 (336)
..++|..+++.+.+--|
T Consensus 287 ~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 287 SDSTLAQAVCSELEVADP 304 (320)
T ss_pred ccHHHHHHHHHHHHhhCc
Confidence 34678777777744333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-09 Score=90.21 Aligned_cols=117 Identities=13% Similarity=0.076 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHH
Q 019734 182 EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQAR 257 (336)
Q Consensus 182 ~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~ 257 (336)
++++..+++++.. +++++++.||.+|.. .+++++|+..|++++. ++++..+..+|.++....| ....++|.
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~----~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g-~~~~~~A~ 130 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLW----RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAG-QHMTPQTR 130 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CCCcHHHH
Confidence 5566666666654 578888888888877 7999999999999965 5789999999997532222 11469999
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHH
Q 019734 258 KWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 303 (336)
Q Consensus 258 ~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a 303 (336)
..+++++.. +++.++++||..+++.|++++|+.+|+++++..+++.
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 999999985 6789999999999999999999999999999876643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-08 Score=93.33 Aligned_cols=218 Identities=9% Similarity=-0.048 Sum_probs=145.4
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (336)
.+..+......|+++.|...+....+..++.+ ..+...++.++.. .+++++|...+++..+. +++.++..++.
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~-l~~~~~~a~l~l~----~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~ 195 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDN-ILVEIARTRILLA----QNELHAARHGVDKLLEMAPRHKEVLKLAEE 195 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc-hHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34445555666777777666666655544421 1233334666666 46777777777777665 46777777777
Q ss_pred HHhcCCCHHHHHHHHHHHHHc--------------------------------------------CCHHHHHHHHHHHHH
Q 019734 146 MYWEMDKKEAAISLYRQAAVL--------------------------------------------GDPAGQFNLGISYLQ 181 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~--------------------------------------------~~~~a~~~Lg~~~~~ 181 (336)
++...||+++|++.+.+..+. +++...+.++..+..
T Consensus 196 ~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~ 275 (409)
T TIGR00540 196 AYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID 275 (409)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH
Confidence 777777777777766655533 133344444444444
Q ss_pred ----HHHHHHHHHHHHc--CCHHHH--HHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCH--HHHHHHHHHHHcCCCC
Q 019734 182 ----EEAVKLLYQASIA--GHVRAQ--YQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYV--RAMYNTSLCYSFGEGL 249 (336)
Q Consensus 182 ----~~A~~~~~ka~~~--~~~~a~--~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~--~a~~~lg~~~~~~~g~ 249 (336)
++|+..++++++. ++.... ......... .+|...+...++++.. ++++ .....+|.++..
T Consensus 276 ~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~----~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~---- 347 (409)
T TIGR00540 276 CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK----PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK---- 347 (409)
T ss_pred CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC----CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH----
Confidence 9999999999875 233211 111111122 4778899999998865 4778 777899999976
Q ss_pred cccHHHHHHHHHH--HHHc-CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 250 PLSHRQARKWMKR--AADC-GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 250 ~~~~~~A~~~~~~--a~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
.+++++|.++|++ +.+. .++..+..||.++...|+.++|.++|++++..
T Consensus 348 ~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 348 HGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred cccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3399999999995 5553 34555779999999999999999999998753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.7e-09 Score=84.07 Aligned_cols=114 Identities=12% Similarity=0.058 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CC
Q 019734 125 LDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GH 196 (336)
Q Consensus 125 ~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~ 196 (336)
..+|+++++.+ |..++.+|.++...|++++|+.+|++++.. .++.+++++|.++.. ++|+.+|+++++. ++
T Consensus 13 ~~~~~~al~~~-p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 13 EDILKQLLSVD-PETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHHHcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 45577777654 334667778887788888888888877654 567777777777665 6666666666553 46
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHH
Q 019734 197 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCY 243 (336)
Q Consensus 197 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~ 243 (336)
+.+++++|.++.. .+++++|+..|++++. ++++..+.+.|.+.
T Consensus 92 ~~a~~~lg~~l~~----~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 92 PEPVYQTGVCLKM----MGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 6666667766666 5677777777777654 35555555555544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.8e-09 Score=84.02 Aligned_cols=105 Identities=13% Similarity=0.045 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
++..++.+|.++.. .+++++|+.+|++++.. .+..+++.+|.++...|++++|+.+|.+++.. +++.+++++
T Consensus 23 ~p~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~l 98 (144)
T PRK15359 23 DPETVYASGYASWQ----EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQT 98 (144)
T ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 34446667888877 68999999999999887 57889999999999999999999999998865 789999999
Q ss_pred HHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019734 176 GISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLH 208 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~ 208 (336)
|.++.. ++|+..|+++++. +++..+.+.|.+..
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 999988 9999999999775 67888888877654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-07 Score=86.83 Aligned_cols=220 Identities=9% Similarity=-0.080 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHc--CCHHHH-HHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDA-GLMYWEMDKKEAAISLYRQAAVL--GDPAGQ-FNL 175 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~l-g~~~~~~~~~~~A~~~~~~a~~~--~~~~a~-~~L 175 (336)
+...+.-|.+... +||+++|.+...++.+. +++...+.+ +......|+++.|..+|.++.+. ++..+. ...
T Consensus 84 ~~~~~~~gl~a~~----eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 84 ARKQTEQALLKLA----EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 3445566777666 58999999999998876 356655655 45548899999999999999875 232233 334
Q ss_pred HHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCC--H--------HHHHHH
Q 019734 176 GISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY--V--------RAMYNT 239 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~--~--------~a~~~l 239 (336)
+.++.. ++|+..+++..+. +++.+...++.+|.. .+|+++|+..+.+...... + .++..+
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~----~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR----TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 777776 9999999999775 689999999999998 7999999988887754321 1 122222
Q ss_pred HHHHHcCCCCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChh
Q 019734 240 SLCYSFGEGLPLSHRQARKWMKRAAD--CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSAT 317 (336)
Q Consensus 240 g~~~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~ 317 (336)
...... ..+.+....+++.... .+++.....++..+...|+.++|...++++++... +. .+..++..+..+
T Consensus 236 ~~~~~~----~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~--~l~~l~~~l~~~ 308 (398)
T PRK10747 236 MDQAMA----DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DE--RLVLLIPRLKTN 308 (398)
T ss_pred HHHHHH----hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CH--HHHHHHhhccCC
Confidence 111111 1234444444444322 35677778888888888888888888888877432 11 222233334446
Q ss_pred cHHHHHHHHHHhhcCCCC
Q 019734 318 SRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~ 335 (336)
+.+++...+++|.+.+|.
T Consensus 309 ~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 309 NPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred ChHHHHHHHHHHHhhCCC
Confidence 677777888888877775
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-07 Score=86.97 Aligned_cols=259 Identities=14% Similarity=0.061 Sum_probs=168.1
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
+...+....|..|+++.|+..+-..+...|. +..-+-+-.-+|.. .+++++|+.--.+.+++ .++.++..+|
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~--nhvlySnrsaa~a~----~~~~~~al~da~k~~~l~p~w~kgy~r~G 77 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPT--NHVLYSNRSAAYAS----LGSYEKALKDATKTRRLNPDWAKGYSRKG 77 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCC--ccchhcchHHHHHH----HhhHHHHHHHHHHHHhcCCchhhHHHHhH
Confidence 3456777788888888888777777776665 33333334444444 46788888888887776 4788888888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH-----------------------------------------
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----------------------------------------- 181 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----------------------------------------- 181 (336)
..+.-.|++++|+..|.+.++. .+...+..|..++..
T Consensus 78 aa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 78 AALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 8888888888888888887754 333333333333211
Q ss_pred --------------------------------------------------------------------------------
Q 019734 182 -------------------------------------------------------------------------------- 181 (336)
Q Consensus 182 -------------------------------------------------------------------------------- 181 (336)
T Consensus 158 ~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk 237 (539)
T KOG0548|consen 158 NPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK 237 (539)
T ss_pred CcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh
Confidence
Q ss_pred ---HHHHHHHHHHHHcC-CH---------------------------------HHH-HHHHHHHhc-C--CCCccCHHHH
Q 019734 182 ---EEAVKLLYQASIAG-HV---------------------------------RAQ-YQLALCLHR-G--RGVDFNLQEA 220 (336)
Q Consensus 182 ---~~A~~~~~ka~~~~-~~---------------------------------~a~-~~lg~~~~~-g--~g~~~~~~~A 220 (336)
..|++.|.++++.. +. .+. ..|+.++.. | .+..++++.+
T Consensus 238 k~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred hhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 66777777765432 10 111 112222221 0 1125788888
Q ss_pred HHHHHHHHHCC-C---------------------------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHH
Q 019734 221 ARWYLRAAEGG-Y---------------------------VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGK 270 (336)
Q Consensus 221 ~~~~~~a~~~~-~---------------------------~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~ 270 (336)
+.+|++++... . ......-|..++. .+|+.+|+.+|.+|+.. .++.
T Consensus 318 i~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk----~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 318 IKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK----KGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCchhH
Confidence 88888876421 0 1112233555543 44899999999999886 4566
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 271 AQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 271 a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
.+-|.+.+|...+++..|+...+++++..++....++..........+.++|++.+.+-++..|+
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 67888999999999999999989988887766655555555555566677788887777766653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.3e-08 Score=90.70 Aligned_cols=187 Identities=13% Similarity=0.003 Sum_probs=138.5
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHH
Q 019734 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAG 171 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-----~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a 171 (336)
..+.+++.+|.++... ++.+.|...+.++... +..+..+..+.++...|++++|+..++++++. ++..+
T Consensus 4 ~~~~a~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a 79 (355)
T cd05804 4 DFALGHAAAALLLLLG----GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLA 79 (355)
T ss_pred ccHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Confidence 4789999999888773 6777777777777654 24566777888999999999999999998865 56666
Q ss_pred HHHHHHHHHH--------HHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHH
Q 019734 172 QFNLGISYLQ--------EEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNT 239 (336)
Q Consensus 172 ~~~Lg~~~~~--------~~A~~~~~ka~~--~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l 239 (336)
+.. +..+.. ..+...+..... .+...+...+|.++.. .+++++|+..++++++. .+..++..+
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A~~~~~~al~~~p~~~~~~~~l 154 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE----AGQYDRAEEAARRALELNPDDAWAVHAV 154 (355)
T ss_pred HHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 553 333332 333333333211 1345566788888887 78999999999999764 677888999
Q ss_pred HHHHHcCCCCcccHHHHHHHHHHHHHcCC--H----HHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 240 SLCYSFGEGLPLSHRQARKWMKRAADCGH--G----KAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 240 g~~~~~~~g~~~~~~~A~~~~~~a~~~~~--~----~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
|.+|.. .| ++++|+.++++++.... + ..+..++.++...|++++|..+|++++..
T Consensus 155 a~i~~~-~g---~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 155 AHVLEM-QG---RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHH-cC---CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 999865 33 99999999999987532 2 23457899999999999999999998754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.8e-09 Score=87.99 Aligned_cols=109 Identities=16% Similarity=0.116 Sum_probs=78.7
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH-H------HHHHH
Q 019734 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYL-Q------EEAVK 186 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~-~------~~A~~ 186 (336)
.++.++++..+++++.. +++++|+.||.+|...|++++|+..|++++.. +++..+..+|.++. . ++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 46778888888888876 58889999999998899999999998888754 67777777777642 2 56666
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC
Q 019734 187 LLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 230 (336)
Q Consensus 187 ~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~ 230 (336)
.|+++++. +++.+++++|.++.. .+++++|+.+|+++++.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~----~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFM----QADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence 66666554 356666666666665 56666666666666543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-07 Score=94.60 Aligned_cols=244 Identities=12% Similarity=-0.069 Sum_probs=167.0
Q ss_pred hcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcC
Q 019734 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEM 150 (336)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~ 150 (336)
.+...|++.+|..++.......+...+...+..+-..+.. .++++.|...+......| +...+..|..+|...
T Consensus 96 ~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~----~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~ 171 (697)
T PLN03081 96 KLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIA----LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC 171 (697)
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC
Confidence 3446788999988877665443333456666666666655 478888888888887764 567788888899999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHcCC---HH-------------------------
Q 019734 151 DKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQASIAGH---VR------------------------- 198 (336)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~---~~------------------------- 198 (336)
|++++|...|.+..+. +...+..+-..|.. ++|+..|++..+.+. ..
T Consensus 172 g~~~~A~~lf~~m~~~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~ 250 (697)
T PLN03081 172 GMLIDARRLFDEMPER-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250 (697)
T ss_pred CCHHHHHHHHhcCCCC-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 9999999999887553 55667777777766 888888888765431 11
Q ss_pred ----------HHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-
Q 019734 199 ----------AQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG- 267 (336)
Q Consensus 199 ----------a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~- 267 (336)
++..|-.+|.. .++.++|...|+... ..+..++..+...|.+. ++.++|+..|++....|
T Consensus 251 ~~~g~~~d~~~~n~Li~~y~k----~g~~~~A~~vf~~m~-~~~~vt~n~li~~y~~~----g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 251 LKTGVVGDTFVSCALIDMYSK----CGDIEDARCVFDGMP-EKTTVAWNSMLAGYALH----GYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHhCCCccceeHHHHHHHHHH----CCCHHHHHHHHHhCC-CCChhHHHHHHHHHHhC----CCHHHHHHHHHHHHHcCC
Confidence 22333444444 577777877777653 34667777777777543 27888888887776543
Q ss_pred --CHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC-cHHHHHHHHHHHhhcChhcHHHHHHHHHHhhc
Q 019734 268 --HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG-ETAADHVKNVILQQLSATSRDRAMLVVDSWRA 331 (336)
Q Consensus 268 --~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 331 (336)
+...+..+...+.+.|++++|...+...++.| .++.......+..+...++.++|..+++++.+
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 45566677777777888888888888887776 33444444445555556777888888877654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-08 Score=99.25 Aligned_cols=201 Identities=11% Similarity=-0.003 Sum_probs=119.0
Q ss_pred CCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCC
Q 019734 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDK 152 (336)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~ 152 (336)
...|++++|..++... +. .+...+..|...|.. .++.++|+..|++....| +...+..+...+...|+
T Consensus 270 ~k~g~~~~A~~vf~~m----~~-~~~vt~n~li~~y~~----~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 270 SKCGDIEDARCVFDGM----PE-KTTVAWNSMLAGYAL----HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred HHCCCHHHHHHHHHhC----CC-CChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 3567788775444332 22 366677777777777 478888888887776553 55666777777777777
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 019734 153 KEAAISLYRQAAVLG---DPAGQFNLGISYLQ----EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 225 (336)
Q Consensus 153 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~ 225 (336)
+++|...+...++.| +...+..|...|.. ++|...|++..+ .+..+|..|...|.. .++.++|+..|+
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-~d~~t~n~lI~~y~~----~G~~~~A~~lf~ 415 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-KNLISWNALIAGYGN----HGRGTKAVEMFE 415 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-CCeeeHHHHHHHHHH----cCCHHHHHHHHH
Confidence 777777777776654 34455566666655 666666665543 244456666666655 566666666666
Q ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-C---CHHHHHHHHHHhhccCCHHHHHHHHHH
Q 019734 226 RAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-G---HGKAQLEHGLGLFTEGEMMKAVVYLEL 294 (336)
Q Consensus 226 ~a~~~~---~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~A~~~~~~ 294 (336)
+..+.| +...+..+-..+.+ .++.++|..+|+...+. + +...+..+..+|.+.|++++|...+++
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~----~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRY----SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 665443 33444444444432 22566666666665542 1 123344555555556666666555554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-07 Score=80.50 Aligned_cols=256 Identities=11% Similarity=0.003 Sum_probs=183.1
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
.-+......+..|++..|...|-...+-.|+ +-.+.|..|..|.. .|.-.-|+.-+.+.+++ +...|..+.|
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~--~Y~aifrRaT~yLA----mGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPN--NYQAIFRRATVYLA----MGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCch--hHHHHHHHHHHHhh----hcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 3477777888999999999999888888777 88899999999988 46777788888988887 5678889999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH----------------HHHHHHHHHHHHcC--CHHHHH
Q 019734 145 LMYWEMDKKEAAISLYRQAAVLG-----DPAGQFNLGISYLQ----------------EEAVKLLYQASIAG--HVRAQY 201 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~~~~----------------~~A~~~~~ka~~~~--~~~a~~ 201 (336)
.++...|.+++|+.-|++.++.+ .-+++-.|+.+-.. ..++++..+.++.. ++.-+-
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 99999999999999999998653 24555555544433 45555555555542 444455
Q ss_pred HHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-------------
Q 019734 202 QLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC------------- 266 (336)
Q Consensus 202 ~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~------------- 266 (336)
.-+.||.. .++..+|+.-++.+.. .++++++|.++.++..- | +.+.++.-.+..++.
T Consensus 194 ~Rakc~i~----~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v-g---d~~~sL~~iRECLKldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 194 ARAKCYIA----EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV-G---DAENSLKEIRECLKLDPDHKLCFPFYKK 265 (504)
T ss_pred HHHHHHHh----cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh-h---hHHHHHHHHHHHHccCcchhhHHHHHHH
Confidence 56677776 6777777777777643 46677777666665421 1 333333333322221
Q ss_pred -----------------CCHHH----------------------HHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHH
Q 019734 267 -----------------GHGKA----------------------QLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVK 307 (336)
Q Consensus 267 -----------------~~~~a----------------------~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~ 307 (336)
++... ..-+..|+.+.+++.+|+....++++..+.++..+-
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHH
Confidence 11111 123455677788999999999999999999998888
Q ss_pred HHHHhhcChhcHHHHHHHHHHhhcCCCCC
Q 019734 308 NVILQQLSATSRDRAMLVVDSWRAMPSLH 336 (336)
Q Consensus 308 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (336)
.....++..+..|.|++-.......+++|
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 88888898888999998888777777654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.2e-09 Score=95.50 Aligned_cols=177 Identities=21% Similarity=0.260 Sum_probs=86.5
Q ss_pred hhHHhhhHHHHHHHHHhCCCC----CHHHHHHHHHHHhc-CC--CC-------------cCCHHHHHHHHHHHHHc----
Q 019734 79 PQLRAASLVCKSWNDALRPLR----EAMVLLRWGKRFKH-GR--GV-------------RKNLDKALDSFLKGAAR---- 134 (336)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~----~~~a~~~lg~~~~~-g~--g~-------------~~~~~~A~~~~~~A~~~---- 134 (336)
|.+++|+..+.+.+..+.+.| .+.|+|+||.+|.. |. |+ ..+++.|+++|..-+++
T Consensus 109 G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l 188 (639)
T KOG1130|consen 109 GAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL 188 (639)
T ss_pred cccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666655544332 45567777777655 11 11 11244555555544332
Q ss_pred CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHH----HcCC----HHHHHHHHHHHHH----HHHHHHHHHHH----Hc
Q 019734 135 GS----TLAMVDAGLMYWEMDKKEAAISLYRQAA----VLGD----PAGQFNLGISYLQ----EEAVKLLYQAS----IA 194 (336)
Q Consensus 135 ~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~----~~~~----~~a~~~Lg~~~~~----~~A~~~~~ka~----~~ 194 (336)
++ ..++-+||..|+-.||++.||.+-+.=+ +-|+ -.|+.+||+++.- +.|+++|++++ +.
T Consensus 189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel 268 (639)
T KOG1130|consen 189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL 268 (639)
T ss_pred hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh
Confidence 22 2344566666666677777766644322 2233 2344555555544 55555555442 22
Q ss_pred CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHH
Q 019734 195 GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--------GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKR 262 (336)
Q Consensus 195 ~~----~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--------~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~ 262 (336)
++ +...|-||..|.- .+++.+||.|+++-+. .|...+++.||..|.... ..++|+.+.++
T Consensus 269 g~r~vEAQscYSLgNtytl----l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg----~h~kAl~fae~ 340 (639)
T KOG1130|consen 269 GNRTVEAQSCYSLGNTYTL----LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG----EHRKALYFAEL 340 (639)
T ss_pred cchhHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh----hHHHHHHHHHH
Confidence 21 2334555555544 3455555555554211 134455555555553322 44444444444
Q ss_pred H
Q 019734 263 A 263 (336)
Q Consensus 263 a 263 (336)
.
T Consensus 341 h 341 (639)
T KOG1130|consen 341 H 341 (639)
T ss_pred H
Confidence 3
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-07 Score=89.89 Aligned_cols=205 Identities=18% Similarity=0.090 Sum_probs=137.5
Q ss_pred hhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHhcCCCHHHHHHH
Q 019734 83 AASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GSTLAMVDAGLMYWEMDKKEAAISL 159 (336)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~---~~~~a~~~lg~~~~~~~~~~~A~~~ 159 (336)
+++..+.+..+..+. |+.+.|.|+.-|.. .++++.|..+.+++++. .++.+|..|+.++...+++.+|+..
T Consensus 462 kslqale~av~~d~~--dp~~if~lalq~A~----~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPT--DPLVIFYLALQYAE----QRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHhcCCC--CchHHHHHHHHHHH----HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 455445555555555 78999999999988 68999999999999987 3789999999999999999999998
Q ss_pred HHHHHHc-CC-----------------HHHHHH-----HHHHH-------------------------------------
Q 019734 160 YRQAAVL-GD-----------------PAGQFN-----LGISY------------------------------------- 179 (336)
Q Consensus 160 ~~~a~~~-~~-----------------~~a~~~-----Lg~~~------------------------------------- 179 (336)
..-+++. ++ ++.... |+..-
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ 615 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRY 615 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHH
Confidence 8887643 22 111100 00000
Q ss_pred ---------------------------------------------HH----HHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019734 180 ---------------------------------------------LQ----EEAVKLLYQASIA--GHVRAQYQLALCLH 208 (336)
Q Consensus 180 ---------------------------------------------~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~ 208 (336)
.. ++|..|+..|... -.+..++..|.++.
T Consensus 616 ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 616 LSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLE 695 (799)
T ss_pred HHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHH
Confidence 00 3333344433322 23344566666666
Q ss_pred cCCCCccCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCC
Q 019734 209 RGRGVDFNLQEAARWYLRA--AEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGE 284 (336)
Q Consensus 209 ~g~g~~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~ 284 (336)
. .+...+|.+.|..| ++++++.++..+|.++..+. .+...+...++..++.. .++++++.||.++...|+
T Consensus 696 ~----~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G--~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 696 V----KGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG--SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred H----HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 5 67777777777776 45677777777777776543 34455555577777764 457777777777777777
Q ss_pred HHHHHHHHHHHHHcC
Q 019734 285 MMKAVVYLELATRAG 299 (336)
Q Consensus 285 ~~~A~~~~~~A~~~~ 299 (336)
.++|..+|.-|+...
T Consensus 770 ~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 770 SKQAAECFQAALQLE 784 (799)
T ss_pred hHHHHHHHHHHHhhc
Confidence 777777777777653
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.9e-08 Score=95.03 Aligned_cols=123 Identities=13% Similarity=-0.044 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
++++++.||.+... .+.+++|..+++.+++. ++..+..+++.++.+.+.+++|+.++++++.. +++.+++.+
T Consensus 85 ~~~~~~~La~i~~~----~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEA----AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 69999999999998 68999999999999987 68999999999999999999999999999855 899999999
Q ss_pred HHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC
Q 019734 176 GISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 230 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~ 230 (336)
|.++.. ++|+.+|++++.. +++.++..+|.++.. .|+.++|...|++|++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~----~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR----RGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 999998 9999999999975 468999999999998 89999999999999765
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-08 Score=95.01 Aligned_cols=212 Identities=17% Similarity=0.022 Sum_probs=165.5
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV-LGDPAGQFNLGIS 178 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~ 178 (336)
.+.....|+.++.. -|-...|+..|++ .+.+-....+|...|+..+|.....+-++ ..++..+..||++
T Consensus 397 ~Wq~q~~laell~s----lGitksAl~I~Er------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 397 IWQLQRLLAELLLS----LGITKSALVIFER------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDV 466 (777)
T ss_pred cchHHHHHHHHHHH----cchHHHHHHHHHh------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence 44455556666655 3456677777766 56777888899999999999999999998 4789999999999
Q ss_pred HHHHHHHHHHHHHHHc---CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccH
Q 019734 179 YLQEEAVKLLYQASIA---GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSH 253 (336)
Q Consensus 179 ~~~~~A~~~~~ka~~~---~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~ 253 (336)
..+ -.+|+||.+. ....|++.+|..... .+|+.++...++.+.+. .....++.+|.+..+.. ++
T Consensus 467 ~~d---~s~yEkawElsn~~sarA~r~~~~~~~~----~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle----k~ 535 (777)
T KOG1128|consen 467 LHD---PSLYEKAWELSNYISARAQRSLALLILS----NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLE----KE 535 (777)
T ss_pred ccC---hHHHHHHHHHhhhhhHHHHHhhcccccc----chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHh----hh
Confidence 976 3344444443 245688888888777 79999999999999654 67899999999998755 99
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhc
Q 019734 254 RQARKWMKRAAD--CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRA 331 (336)
Q Consensus 254 ~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 331 (336)
..|...|.+++. .++..++.||...|...++..+|...+++|+..+...-....+.+.....-+..++|+..+.++.+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999999986 488999999999999999999999999999986543333333445555566778888888877765
Q ss_pred C
Q 019734 332 M 332 (336)
Q Consensus 332 ~ 332 (336)
+
T Consensus 616 ~ 616 (777)
T KOG1128|consen 616 L 616 (777)
T ss_pred h
Confidence 4
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.1e-07 Score=82.12 Aligned_cols=191 Identities=16% Similarity=0.091 Sum_probs=145.7
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH----HHHHHHHH
Q 019734 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYLQ----EEAVKLLY 189 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~----~~A~~~~~ 189 (336)
.+++..|+.+-+|+++. .+.+++..-|.++...+++++|+-.|+.|.... +.+.+-.|-.+|+. .+|...-.
T Consensus 313 ~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 313 EKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred hhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 47888888888888887 477888888999988899999999998887664 45566666666665 45544444
Q ss_pred HHHHc--CCHHHHHHHH-HHHhcCCCCccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019734 190 QASIA--GHVRAQYQLA-LCLHRGRGVDFNLQEAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 264 (336)
Q Consensus 190 ka~~~--~~~~a~~~lg-~~~~~g~g~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~ 264 (336)
-+... .++.+...+| .++... +.-.++|..+|++++ ++++..|...++.++.. ++.++.++..+++.+
T Consensus 393 ~~~~~~~~sA~~LtL~g~~V~~~d---p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~----Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 393 WTIRLFQNSARSLTLFGTLVLFPD---PRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV----EGPTKDIIKLLEKHL 465 (564)
T ss_pred HHHHHhhcchhhhhhhcceeeccC---chhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh----hCccchHHHHHHHHH
Confidence 44432 4667777776 333321 456789999999996 46899999999999964 458999999999998
Q ss_pred Hc-CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH--HHHHHHHHHHhhcC
Q 019734 265 DC-GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET--AADHVKNVILQQLS 315 (336)
Q Consensus 265 ~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~--~a~~~~~~~~~~~~ 315 (336)
.. .+..-+..||.++...+.+++|+.+|.+|++.++. .+..-+..+.+...
T Consensus 466 ~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 466 IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 74 56677899999999999999999999999998754 45555556665554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3e-07 Score=90.65 Aligned_cols=122 Identities=11% Similarity=0.034 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHH
Q 019734 169 PAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTS 240 (336)
Q Consensus 169 ~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg 240 (336)
++++++||.+... ++|..+++.+++. ++..|..+++.++.. .+.+++|..++++++. +.+..+++.+|
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~----~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR----QQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 4444444444444 4444444444332 344555555555554 4555555555555543 34555555555
Q ss_pred HHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 241 LCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 241 ~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
.++.. .| .+++|...|++++.. +++.++.++|.++...|+.++|...|++|++.
T Consensus 162 ~~l~~-~g---~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDE-IG---QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHH-hc---chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55533 22 555555555555543 33455555555555555555555555555553
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-06 Score=79.27 Aligned_cols=222 Identities=13% Similarity=-0.024 Sum_probs=144.2
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (336)
....+...+..|++++|...+.++++..|. +..++.. +..+..-....+....+...+...... +...+...+|.
T Consensus 46 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 122 (355)
T cd05804 46 AHVEALSAWIAGDLPKALALLEQLLDDYPR--DLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF 122 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence 455666778899999999999999998776 5555543 333322001123444455444442222 34567778899
Q ss_pred HHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHcC--C----HHHHHHHHHHHhcCCCC
Q 019734 146 MYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIAG--H----VRAQYQLALCLHRGRGV 213 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~--~----~~a~~~lg~~~~~g~g~ 213 (336)
++...|++++|+..++++++. +++.++..+|.++.. ++|+.+++++++.. . ...+..+|.++..
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~---- 198 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE---- 198 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH----
Confidence 999999999999999999865 678899999999988 99999999998753 1 2346689999988
Q ss_pred ccCHHHHHHHHHHHHHCCC---HHH-HHHHHHHHHcCCCCcccHHHHHHH--H-HHHHH--cC--CHHHHHHHHHHhhcc
Q 019734 214 DFNLQEAARWYLRAAEGGY---VRA-MYNTSLCYSFGEGLPLSHRQARKW--M-KRAAD--CG--HGKAQLEHGLGLFTE 282 (336)
Q Consensus 214 ~~~~~~A~~~~~~a~~~~~---~~a-~~~lg~~~~~~~g~~~~~~~A~~~--~-~~a~~--~~--~~~a~~~lg~~~~~~ 282 (336)
.+++++|+.+|+++..... ... .+..+..+..+. .......+..| + ..... .+ ........+.++...
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLE-LAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHH-hcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 8999999999999864422 111 112211111110 01123333333 1 11111 11 112224566777788
Q ss_pred CCHHHHHHHHHHHHH
Q 019734 283 GEMMKAVVYLELATR 297 (336)
Q Consensus 283 ~~~~~A~~~~~~A~~ 297 (336)
|+.++|...++....
T Consensus 278 ~~~~~a~~~L~~l~~ 292 (355)
T cd05804 278 GDKDALDKLLAALKG 292 (355)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988755
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-08 Score=79.31 Aligned_cols=90 Identities=13% Similarity=0.046 Sum_probs=50.1
Q ss_pred HHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMY 147 (336)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~ 147 (336)
.-+...+..|++++|..+++-.....+. +++.+++||.++.. .+++++|+..|.+|+.+ +++.+.+++|.++
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~--~~~y~~gLG~~~Q~----~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW--SFDYWFRLGECCQA----QKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3344445555555555555555555444 55555555555555 45555555555555554 4555555555555
Q ss_pred hcCCCHHHHHHHHHHHHH
Q 019734 148 WEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~ 165 (336)
+..|+.+.|+..|+.++.
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.4e-06 Score=83.20 Aligned_cols=109 Identities=18% Similarity=0.126 Sum_probs=94.2
Q ss_pred cCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH----HHHHHHHH
Q 019734 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGISYLQ----EEAVKLLY 189 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~~----~~A~~~~~ 189 (336)
.||+++|.+.+...+++. ++.+++.||.+|...||.+++......|+- +++.+-|..++....+ ++|+-||.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 479999999999999984 899999999999999999999999999874 4889999999999988 99999999
Q ss_pred HHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC
Q 019734 190 QASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 230 (336)
Q Consensus 190 ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~ 230 (336)
+|+... +-.-.++-..+|.+ .|+..+|...|.+.++.
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~----~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQK----TGDLKRAMETFLQLLQL 270 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHH----hChHHHHHHHHHHHHhh
Confidence 999864 55677778888877 67788888777766543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3e-06 Score=79.98 Aligned_cols=248 Identities=15% Similarity=0.014 Sum_probs=182.8
Q ss_pred hcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC
Q 019734 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD 151 (336)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~ 151 (336)
.....+-++-+..+|...++-.+ .....+.-+..+..- .+..+.-..+|++|+.. ....-+...+..++..|
T Consensus 525 ~~~k~~~~~carAVya~alqvfp---~k~slWlra~~~ek~---hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 525 SCEKRPAIECARAVYAHALQVFP---CKKSLWLRAAMFEKS---HGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAG 598 (913)
T ss_pred HHHhcchHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHh---cCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcC
Confidence 33445555556666666666533 334444444444443 34566777788888876 35566777788888889
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 019734 152 KKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA-GHVRAQYQLALCLHRGRGVDFNLQEAARWY 224 (336)
Q Consensus 152 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~-~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~ 224 (336)
|...|+..+.+|.+. ++.+.++.--.+... +.|..+|.+|-.. +....++.-+.+... .++.++|+.++
T Consensus 599 dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~----ld~~eeA~rll 674 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERY----LDNVEEALRLL 674 (913)
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHH----hhhHHHHHHHH
Confidence 999999999999876 344444433333333 8899999988554 677788777777665 67889999999
Q ss_pred HHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCc
Q 019734 225 LRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 225 ~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~ 300 (336)
+.++.. ....-+..+|.++... ++.+.|...|...... +.+.-+..|+.+-...|+..+|...++++.-.++
T Consensus 675 Ee~lk~fp~f~Kl~lmlGQi~e~~----~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 675 EEALKSFPDFHKLWLMLGQIEEQM----ENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHhCCchHHHHHHHhHHHHHH----HHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 998875 5678888899998763 3888999888888764 5567778888877778899999999999988888
Q ss_pred HHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 301 TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
.++..++..+...+..+..++|..+..+.++.+|+
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 88888888888888888899999888888887775
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-07 Score=84.29 Aligned_cols=161 Identities=21% Similarity=0.178 Sum_probs=107.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHH---HHHHHH
Q 019734 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQ---EEAVKL 187 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~---~~A~~~ 187 (336)
.|+++|...|++|+ ..|...+++++|...|.++++. ++ ..++...+.+|.. ++|+.+
T Consensus 29 ~~~e~Aa~~y~~Aa------------~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~ 96 (282)
T PF14938_consen 29 PDYEEAADLYEKAA------------NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIEC 96 (282)
T ss_dssp HHHHHHHHHHHHHH------------HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHH------------HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 36777777777764 3444556666666666665432 22 2334445555554 677777
Q ss_pred HHHHHH----cCC----HHHHHHHHHHHhcCCCCc-cCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCc
Q 019734 188 LYQASI----AGH----VRAQYQLALCLHRGRGVD-FNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLP 250 (336)
Q Consensus 188 ~~ka~~----~~~----~~a~~~lg~~~~~g~g~~-~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~g~~ 250 (336)
|++|++ .|. ...+.++|.+|+. . +|+++|+++|++|++. +. ......+|.++....
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~----~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~--- 169 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKELAEIYEE----QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG--- 169 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHCC----TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC---
Confidence 777765 343 4567899999988 5 8999999999999763 32 445678888886633
Q ss_pred ccHHHHHHHHHHHHHc--C----CH---HHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 251 LSHRQARKWMKRAADC--G----HG---KAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 251 ~~~~~A~~~~~~a~~~--~----~~---~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
++++|+..|++.+.. . .. ..++..+.++...||+..|...+++.....
T Consensus 170 -~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 170 -RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp --HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred -CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999863 1 11 234677889999999999999999988653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.8e-08 Score=76.14 Aligned_cols=109 Identities=18% Similarity=0.084 Sum_probs=92.7
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHH
Q 019734 186 KLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMK 261 (336)
Q Consensus 186 ~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~ 261 (336)
+.|++++.. ++..+.+.+|.++.. .+++++|..+|++++. +.++.+++.+|.++... +++++|..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQ----QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML----KEYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 356677665 467888999999988 7999999999999865 46889999999999753 38999999999
Q ss_pred HHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHH
Q 019734 262 RAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 302 (336)
Q Consensus 262 ~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 302 (336)
+++.. .++..++++|.+|...|++++|+.+|+++++..+.+
T Consensus 76 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 76 LAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 99875 557888999999999999999999999999976544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=6e-07 Score=82.74 Aligned_cols=96 Identities=22% Similarity=0.128 Sum_probs=82.0
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHH
Q 019734 200 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEH 275 (336)
Q Consensus 200 ~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l 275 (336)
...-|..+.. .+||..|+..|.+|+.. .++..+.|.+.||.+.. ++..|+.-.+.+++.++ ..+++.=
T Consensus 361 ~r~kGne~Fk----~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~----~~~~aL~Da~~~ieL~p~~~kgy~RK 432 (539)
T KOG0548|consen 361 EREKGNEAFK----KGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLG----EYPEALKDAKKCIELDPNFIKAYLRK 432 (539)
T ss_pred HHHHHHHHHh----ccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh----hHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 4455777777 79999999999999864 78899999999998754 89999999999998744 6678888
Q ss_pred HHHhhccCCHHHHHHHHHHHHHcCcHHH
Q 019734 276 GLGLFTEGEMMKAVVYLELATRAGETAA 303 (336)
Q Consensus 276 g~~~~~~~~~~~A~~~~~~A~~~~~~~a 303 (336)
|.++....+|++|...|++|++.++...
T Consensus 433 g~al~~mk~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 433 GAALRAMKEYDKALEAYQEALELDPSNA 460 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 9999999999999999999999875544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-07 Score=87.19 Aligned_cols=110 Identities=15% Similarity=0.044 Sum_probs=99.2
Q ss_pred HHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDA 143 (336)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~l 143 (336)
..+..++..++..+++.+|+.++.+.++..+. ++.+++.+|.+|.. .+++++|+..+++|+.+ .++.+++.+
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~--~~~a~~~~a~~~~~----~g~~~eAl~~~~~Al~l~P~~~~a~~~l 76 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPN--NAELYADRAQANIK----LGNFTEAVADANKAIELDPSLAKAYLRK 76 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 35678888999999999999999999999887 89999999999998 68999999999999987 589999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 019734 144 GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ 181 (336)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 181 (336)
|.+|...|++++|+.+|+++++. +++.+...++.+...
T Consensus 77 g~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 77 GTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999866 788988888888654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-06 Score=89.02 Aligned_cols=200 Identities=12% Similarity=0.005 Sum_probs=109.6
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHH
Q 019734 119 KNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQA 191 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka 191 (336)
+++++|.+.++.+.+.| +...+..|-..|.+.|+.++|...|.+..+ .+...|..+...|.. ++|+..|++.
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-KDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-CCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444444444432 334445555566666666666666665433 233445555555544 6666666665
Q ss_pred HHcCC--HHHHH-----------------------------------HHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHH
Q 019734 192 SIAGH--VRAQY-----------------------------------QLALCLHRGRGVDFNLQEAARWYLRAAEGGYVR 234 (336)
Q Consensus 192 ~~~~~--~~a~~-----------------------------------~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~ 234 (336)
...-. ...+. .|-.+|.. .++.++|...|+.. ..+..
T Consensus 482 ~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k----~G~~~~A~~~f~~~--~~d~~ 555 (857)
T PLN03077 482 LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR----CGRMNYAWNQFNSH--EKDVV 555 (857)
T ss_pred HhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH----cCCHHHHHHHHHhc--CCChh
Confidence 43211 11111 11122332 46666776666665 55666
Q ss_pred HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHhhccCCHHHHHHHHHHHH-HcC-cHHHHHHHHH
Q 019734 235 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGEMMKAVVYLELAT-RAG-ETAADHVKNV 309 (336)
Q Consensus 235 a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~A~-~~~-~~~a~~~~~~ 309 (336)
+|..+...|... ++.++|+..|++..+.| +...+..+-..+...|+.++|..+|+... ..| .++...+...
T Consensus 556 s~n~lI~~~~~~----G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 556 SWNILLTGYVAH----GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred hHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 666666666442 27777777777776643 23334444455667777788888777777 333 3444444444
Q ss_pred HHhhcChhcHHHHHHHHHHh
Q 019734 310 ILQQLSATSRDRAMLVVDSW 329 (336)
Q Consensus 310 ~~~~~~~~~~~~a~~~~~~~ 329 (336)
+......++.++|.++.++.
T Consensus 632 v~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHC
Confidence 44444566677777777765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.8e-07 Score=73.89 Aligned_cols=96 Identities=16% Similarity=0.096 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHH
Q 019734 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKA 271 (336)
Q Consensus 196 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a 271 (336)
.-+..|.+|..+.. .+++++|...|+-.+ ++.+...+++||.++.. .+++.+|+..|.+|+.. +++.+
T Consensus 34 ~l~~lY~~A~~ly~----~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~----~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 34 PLNTLYRYAMQLME----VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA----QKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCchH
Confidence 34567888887777 799999999999885 56789999999999965 44999999999999874 78999
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 272 QLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 272 ~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
.+++|.++...|+.+.|...|+.|++..
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999864
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-05 Score=76.81 Aligned_cols=144 Identities=10% Similarity=-0.009 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC---------------CC----HHHHHHHHHH
Q 019734 182 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG---------------GY----VRAMYNTSLC 242 (336)
Q Consensus 182 ~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~---------------~~----~~a~~~lg~~ 242 (336)
..+..|+...+..|.|....+|-.+|.. .....--......-... .. ..+++.|+..
T Consensus 128 ~~~~~yl~~~l~KgvPslF~~lk~Ly~d----~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqh 203 (517)
T PF12569_consen 128 ERLDEYLRPQLRKGVPSLFSNLKPLYKD----PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQH 203 (517)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHcC----hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHH
Confidence 6677777777888888888888888764 22222222222221110 01 2456788888
Q ss_pred HHcCCCCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHH
Q 019734 243 YSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRD 320 (336)
Q Consensus 243 ~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~ 320 (336)
|.. .+++++|+.+..+|++.. .++.++.-|.++...|++.+|..+++.|...+..+--.+-..+.-.+..++.+
T Consensus 204 yd~----~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e 279 (517)
T PF12569_consen 204 YDY----LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIE 279 (517)
T ss_pred HHH----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHH
Confidence 855 339999999999999964 47788899999999999999999999999998877777777777777888999
Q ss_pred HHHHHHHHhhcCC
Q 019734 321 RAMLVVDSWRAMP 333 (336)
Q Consensus 321 ~a~~~~~~~~~~~ 333 (336)
+|..++....+..
T Consensus 280 ~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 280 EAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHhhcCCC
Confidence 9999888776543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.9e-07 Score=72.10 Aligned_cols=100 Identities=15% Similarity=0.074 Sum_probs=52.7
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CC
Q 019734 127 SFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GH 196 (336)
Q Consensus 127 ~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~ 196 (336)
.|++++.. .+..+.+.+|..+...|++++|+.+|++++.. .++.+++.+|.++.. ++|+.+|+++++. .+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444444 24455555666666666666666666555432 344555555555543 4444444444433 24
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC
Q 019734 197 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 230 (336)
Q Consensus 197 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~ 230 (336)
+..++++|.+|.. .+++++|+.+|+++++.
T Consensus 85 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 85 PRPYFHAAECLLA----LGEPESALKALDLAIEI 114 (135)
T ss_pred hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 4555555555555 55666666666665543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.3e-06 Score=76.60 Aligned_cols=256 Identities=11% Similarity=-0.015 Sum_probs=172.8
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
.++..+...|..++|......++..+++.|+.| +.+-..|+.+.. .++-++|..+-+.++.. .+...|.-+|
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHg--eslAmkGL~L~~----lg~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHG--ESLAMKGLTLNC----LGKKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccc--hhHHhccchhhc----ccchHHHHHHHHHHhccCcccchhHHHHH
Confidence 457888888999999999999999999988844 555556766544 68999999999999876 4678889999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH-----HHHHHHHHHH-HHcCCHHHHHHHHHHHhcCCCCccC
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ-----EEAVKLLYQA-SIAGHVRAQYQLALCLHRGRGVDFN 216 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~-----~~A~~~~~ka-~~~~~~~a~~~lg~~~~~g~g~~~~ 216 (336)
.++...+++++|+.+|+.|+.. +|.+.+..|+.+-.+ ..+...++.. +.++....|.-++..+.. .++
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L----~g~ 158 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL----LGE 158 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH----HHH
Confidence 9999999999999999999855 788888888877766 2222222222 223555666666666665 678
Q ss_pred HHHHHHHHHHHHHCC----------CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCC
Q 019734 217 LQEAARWYLRAAEGG----------YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGE 284 (336)
Q Consensus 217 ~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~ 284 (336)
+..|....+.-.... ...+...-...... .| ..++|.+.+.+--.. +.......-+.++...++
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E-~g---~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~ 234 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE-AG---SLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQ 234 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH-cc---cHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhh
Confidence 888887665543221 12222222222222 12 466777666554321 222233455778888999
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHhhc-ChhcHHHHHHHHHHhhcCCCCC
Q 019734 285 MMKAVVYLELATRAGETAADHVKNVILQQL-SATSRDRAMLVVDSWRAMPSLH 336 (336)
Q Consensus 285 ~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~ 336 (336)
+++|...|...+...+.+-.++........ ..+.......+....-..+|.|
T Consensus 235 lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 235 LEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred HHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 999999999999887776666554433332 2333344445666666666654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.5e-07 Score=81.09 Aligned_cols=219 Identities=14% Similarity=0.015 Sum_probs=149.4
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
+........+...+|..|...+-...+..|+ ++..+.+.+..+.. .+++++|.-..++.++. +.+.++...+
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd--~a~yy~nRAa~~m~----~~~~~~a~~dar~~~r~kd~~~k~~~r~~ 124 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPD--NASYYSNRAATLMM----LGRFEEALGDARQSVRLKDGFSKGQLREG 124 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCcc--chhhhchhHHHHHH----HHhHhhcccchhhheecCCCccccccchh
Confidence 3444555567778888898888888888877 56666666666665 35666666666666554 3444555555
Q ss_pred HHHhcCCCHHHHHHHHH----------------------------------------------------HHHH--cCCHH
Q 019734 145 LMYWEMDKKEAAISLYR----------------------------------------------------QAAV--LGDPA 170 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~----------------------------------------------------~a~~--~~~~~ 170 (336)
.++...++..+|.+.|+ ..+. ..+.+
T Consensus 125 ~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~ 204 (486)
T KOG0550|consen 125 QCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAE 204 (486)
T ss_pred hhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhH
Confidence 55555555555544333 2222 23555
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHcCC--H------------HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC-
Q 019734 171 GQFNLGISYLQ----EEAVKLLYQASIAGH--V------------RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG- 231 (336)
Q Consensus 171 a~~~Lg~~~~~----~~A~~~~~ka~~~~~--~------------~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~- 231 (336)
+.+--|.++.. ++|+..|++++..+. . ..+-+-|.-... .|++.+|.+.|..|+..+
T Consensus 205 al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk----~G~y~~A~E~Yteal~idP 280 (486)
T KOG0550|consen 205 ALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK----NGNYRKAYECYTEALNIDP 280 (486)
T ss_pred HHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh----ccchhHHHHHHHHhhcCCc
Confidence 66666666655 999999999987642 1 123333433333 689999999999997653
Q ss_pred -----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 232 -----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 232 -----~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
++..+.+.+.+... .| +.++|+.--..++..+. ..++..-|.++...+++++|++.|++++...
T Consensus 281 ~n~~~naklY~nra~v~~r-Lg---rl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 281 SNKKTNAKLYGNRALVNIR-LG---RLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred cccchhHHHHHHhHhhhcc-cC---CchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34456666666644 22 89999999999988754 6777888999999999999999999999764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.8e-06 Score=86.20 Aligned_cols=196 Identities=9% Similarity=-0.031 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHH
Q 019734 120 NLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQAS 192 (336)
Q Consensus 120 ~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~ 192 (336)
+.+.|.+.+....+.| +...+..|...|...|++++|...|.+... .+...|..+...|.. ++|+..|++..
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3444444444443332 344455555555556666666666655432 334455555555555 66666666554
Q ss_pred HcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019734 193 IAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 266 (336)
Q Consensus 193 ~~~---~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~ 266 (336)
+.+ +...+..+=..+.. .++.++|.+.+..+.+.| +...+..|-.+|.+. ++.++|.+.|++..+
T Consensus 382 ~~g~~Pd~~t~~~ll~a~~~----~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~----g~~~~A~~vf~~m~~- 452 (857)
T PLN03077 382 QDNVSPDEITIASVLSACAC----LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC----KCIDKALEVFHNIPE- 452 (857)
T ss_pred HhCCCCCceeHHHHHHHHhc----cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc----CCHHHHHHHHHhCCC-
Confidence 433 12222222222323 456666666666665543 344555566666542 277777777776543
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHH
Q 019734 267 GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLV 325 (336)
Q Consensus 267 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 325 (336)
.+...+..+...|...|+.++|+..|++....-.++...+...+......+..+.++++
T Consensus 453 ~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 453 KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 34455666666677777777777777777654344443333333333333333333333
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-06 Score=78.21 Aligned_cols=188 Identities=10% Similarity=-0.042 Sum_probs=158.7
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (336)
++..+...+...++..|.....+..+..+. +..++..-|.++.. .+++++|+-.|+.|..+. .-+.+..|-.
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r--~~~alilKG~lL~~----~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~h 376 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEPR--NHEALILKGRLLIA----LERHTQAVIAFRTAQMLAPYRLEIYRGLFH 376 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCcc--cchHHHhccHHHHh----ccchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 344455567888999998888888777655 88899999999988 589999999999999885 5677888888
Q ss_pred HHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHH-HHHHH-----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCcc
Q 019734 146 MYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG-ISYLQ-----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDF 215 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg-~~~~~-----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~ 215 (336)
.|...|.+.+|...-+.++.. .++.++..+| .++.. ++|...+++++.. ++..|-..++.++.. .+
T Consensus 377 sYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~----Eg 452 (564)
T KOG1174|consen 377 SYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV----EG 452 (564)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh----hC
Confidence 999999999999999988876 7888888887 66655 9999999999765 789999999999987 78
Q ss_pred CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH
Q 019734 216 NLQEAARWYLRAA-EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG 269 (336)
Q Consensus 216 ~~~~A~~~~~~a~-~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~ 269 (336)
.+..++..+++++ ...|..-+..||.++.. ...+.+|+.+|.+|+.+++.
T Consensus 453 ~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A----~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 453 PTKDIIKLLEKHLIIFPDVNLHNHLGDIMRA----QNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred ccchHHHHHHHHHhhccccHHHHHHHHHHHH----hhhHHHHHHHHHHHHhcCcc
Confidence 8999999999995 45788889999999965 33899999999999987553
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=8e-07 Score=87.15 Aligned_cols=257 Identities=14% Similarity=0.036 Sum_probs=150.9
Q ss_pred HHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 019734 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMY 147 (336)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~ 147 (336)
.....+++.+++..++..++..++..|. +..+|..||.+|.. .|.+..|++-|.+|..++ +..+.|..+.+.
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~dPk--D~n~W~gLGeAY~~----sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~e 640 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTDPK--DYNLWLGLGEAYPE----SGRYSHALKVFTKASLLRPLSKYGRFKEAVME 640 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCCch--hHHHHHHHHHHHHh----cCceehHHHhhhhhHhcCcHhHHHHHHHHHHH
Confidence 3444566788888998888888888877 78889999999988 478889999999888774 556677778888
Q ss_pred hcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH-----------HHHHHHHHHHHH-------c---CCHH------
Q 019734 148 WEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ-----------EEAVKLLYQASI-------A---GHVR------ 198 (336)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~-----------~~A~~~~~ka~~-------~---~~~~------ 198 (336)
...|.+.+|+..+...+.. ....++..||.++.. .+|..+++++++ . .+.-
T Consensus 641 cd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as 720 (1238)
T KOG1127|consen 641 CDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS 720 (1238)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Confidence 8888888888888876643 222333344444443 444444444432 0 1111
Q ss_pred --------------HHHHHHHHHh--cCCCCccCHH---HHHHHHHHHHHC-CCHHHHHHHHHHHHc-----CCCCcccH
Q 019734 199 --------------AQYQLALCLH--RGRGVDFNLQ---EAARWYLRAAEG-GYVRAMYNTSLCYSF-----GEGLPLSH 253 (336)
Q Consensus 199 --------------a~~~lg~~~~--~g~g~~~~~~---~A~~~~~~a~~~-~~~~a~~~lg~~~~~-----~~g~~~~~ 253 (336)
....++.+.. .+.++.++.+ .+.+++-..+.. .++..|++||..|.. +. ...+.
T Consensus 721 dac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~e-t~~~~ 799 (1238)
T KOG1127|consen 721 DACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGE-TMKDA 799 (1238)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCC-cchhH
Confidence 1111222211 1222222223 344444444332 346666677666644 22 23344
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhc
Q 019734 254 RQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRA 331 (336)
Q Consensus 254 ~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 331 (336)
..|+.++++++.. ++...+..||.+ ...|++.-|.++|-++.-..+.....+.+...-.+...+.+.|....+..+.
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 5777777777664 444455566664 4446666666666666665555555555544445555555566666555555
Q ss_pred CCC
Q 019734 332 MPS 334 (336)
Q Consensus 332 ~~~ 334 (336)
+.|
T Consensus 879 LdP 881 (1238)
T KOG1127|consen 879 LDP 881 (1238)
T ss_pred cCc
Confidence 544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-06 Score=86.88 Aligned_cols=121 Identities=13% Similarity=0.058 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHH-----------------H
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISL-----------------Y 160 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~-----------------~ 160 (336)
+..++..|..+|.. .+++++|+...+.++.. +....++.+|.++...+++.++... |
T Consensus 30 n~~a~~~Li~~~~~----~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKS----ENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHH
Confidence 44455555555533 24555555555544443 2344455555555444433333322 1
Q ss_pred HHHH-Hc-CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 019734 161 RQAA-VL-GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 229 (336)
Q Consensus 161 ~~a~-~~-~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~ 229 (336)
-+.+ +. ++..|++.||.||.. ++|+..|+++++. .++.++.++|..|.. . |.++|+.++.+|+.
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae----~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE----E-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----h-hHHHHHHHHHHHHH
Confidence 1111 11 223466666666654 6666666666554 355666666666655 3 66666666666643
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-06 Score=72.63 Aligned_cols=148 Identities=16% Similarity=0.095 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019734 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALC 206 (336)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~ 206 (336)
++..+ ..+...+...|+-+.+..+..+++.. .+.+.+..+|..... ..|+..+.+++.. .+.+++..+|.+
T Consensus 65 ~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 65 EDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred chHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 34555 66666666667666666666664432 344444445555544 6666666666543 455666666666
Q ss_pred HhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhcc
Q 019734 207 LHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTE 282 (336)
Q Consensus 207 ~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~ 282 (336)
|.+ .++.+.|..-|.++++ ++++....|||..|.- .+|++.|..++..+... .+.....||+.+....
T Consensus 144 ldq----~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L----~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~ 215 (257)
T COG5010 144 LDQ----LGRFDEARRAYRQALELAPNEPSIANNLGMSLLL----RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQ 215 (257)
T ss_pred HHH----ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH----cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc
Confidence 665 5666666666666643 3556666666666642 22666666666666543 2344455666666666
Q ss_pred CCHHHHHHH
Q 019734 283 GEMMKAVVY 291 (336)
Q Consensus 283 ~~~~~A~~~ 291 (336)
|++.+|...
T Consensus 216 g~~~~A~~i 224 (257)
T COG5010 216 GDFREAEDI 224 (257)
T ss_pred CChHHHHhh
Confidence 666665544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-06 Score=87.56 Aligned_cols=203 Identities=13% Similarity=0.029 Sum_probs=139.8
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC--------------CCcCCHHHHHHHHHHHHHc
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR--------------GVRKNLDKALDSFLKGAAR 134 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~--------------g~~~~~~~A~~~~~~A~~~ 134 (336)
...+......++++++..++...++..|+ ...+++.+|.++..-. ....++ .++.+|...+..
T Consensus 35 ~~Li~~~~~~~~~deai~i~~~~l~~~P~--~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i~~ 111 (906)
T PRK14720 35 DDLIDAYKSENLTDEAKDICEEHLKEHKK--SISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKILL 111 (906)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCc--ceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHHHh
Confidence 33333334889999999999988888777 8889999999887711 011123 556666665543
Q ss_pred --CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH---HHHHHHHHHHHHc-----CCHHHHHH
Q 019734 135 --GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ---EEAVKLLYQASIA-----GHVRAQYQ 202 (336)
Q Consensus 135 --~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~---~~A~~~~~ka~~~-----~~~~a~~~ 202 (336)
.+..|++.||.+|...|+.++|...|+++++. +++.+++++|..|.. ++|++++.+|+.. .+....-.
T Consensus 112 ~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~~~~e~ 191 (906)
T PRK14720 112 YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYVGIEEI 191 (906)
T ss_pred hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 45679999999999999999999999999865 789999999999988 9999999999764 12222222
Q ss_pred HHHHHhcCCCCccCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 203 LALCLHRGRGVDFNLQEAARWYLRAAEG-G---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHG 276 (336)
Q Consensus 203 lg~~~~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 276 (336)
+-.++... +.|.+.=....++.... + -...+.-|=.+|..+ +++++++..++++++. .+..+.+.|.
T Consensus 192 W~k~~~~~---~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~----~~~~~~i~iLK~iL~~~~~n~~a~~~l~ 264 (906)
T PRK14720 192 WSKLVHYN---SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL----EDWDEVIYILKKILEHDNKNNKAREELI 264 (906)
T ss_pred HHHHHhcC---cccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh----hhhhHHHHHHHHHHhcCCcchhhHHHHH
Confidence 22222220 23333333333333322 2 233444455666543 3899999999999885 5567778888
Q ss_pred HHhhc
Q 019734 277 LGLFT 281 (336)
Q Consensus 277 ~~~~~ 281 (336)
.+|..
T Consensus 265 ~~y~~ 269 (906)
T PRK14720 265 RFYKE 269 (906)
T ss_pred HHHHH
Confidence 87763
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.2e-05 Score=68.00 Aligned_cols=194 Identities=19% Similarity=0.157 Sum_probs=158.1
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
++.-++.||.-++. .+++..|+..|..|++.+ +-.+.|..|.+|...|+..-|+.-+.+.++. +...|-...
T Consensus 37 dvekhlElGk~lla----~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLA----RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHH----hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 56678889998887 589999999999999874 6789999999999999999999999999876 677888899
Q ss_pred HHHHHH----HHHHHHHHHHHHcC-----CHHHHHHHHHHHhc--------CCCCccCHHHHHHHHHHHHHCC--CHHHH
Q 019734 176 GISYLQ----EEAVKLLYQASIAG-----HVRAQYQLALCLHR--------GRGVDFNLQEAARWYLRAAEGG--YVRAM 236 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~~-----~~~a~~~lg~~~~~--------g~g~~~~~~~A~~~~~~a~~~~--~~~a~ 236 (336)
|.+++. ++|..-|.+.++.+ .-+++-.|+.+-+. .+-..+|+..++.+....++.. ++.-.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 999988 99999999998753 23455444443211 0112589999999999998765 55556
Q ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH
Q 019734 237 YNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 301 (336)
Q Consensus 237 ~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~ 301 (336)
...+.||.. ..+..+|+.-++.+... ++.+..|.+..+++..|+.+.+..-.+..+..++.
T Consensus 193 ~~Rakc~i~----~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 193 QARAKCYIA----EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD 255 (504)
T ss_pred HHHHHHHHh----cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence 677888865 33899999999999774 78999999999999999999999999999887654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.4e-06 Score=75.93 Aligned_cols=146 Identities=20% Similarity=0.116 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGI 177 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~ 177 (336)
...++|..+..+.. .+++++|...+...+.. +|+..+-..+.++...++..+|.+.+++++..
T Consensus 305 ~~aa~YG~A~~~~~----~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----------- 369 (484)
T COG4783 305 GLAAQYGRALQTYL----AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL----------- 369 (484)
T ss_pred chHHHHHHHHHHHH----hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------
Confidence 55666666666666 46666666666665543 56666666666666666666666666666533
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHH
Q 019734 178 SYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQ 255 (336)
Q Consensus 178 ~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~ 255 (336)
..+.+-...++|..|.. .+++.+|+..+++.. ++.++..|..|+..|...
T Consensus 370 ---------------~P~~~~l~~~~a~all~----~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~--------- 421 (484)
T COG4783 370 ---------------DPNSPLLQLNLAQALLK----GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAEL--------- 421 (484)
T ss_pred ---------------CCCccHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHh---------
Confidence 11234445556666666 566777777777764 346777788888777531
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 256 ARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 256 A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
.+...+....+..|.-.|++++|+..+..|...
T Consensus 422 ----------g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 422 ----------GNRAEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ----------CchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 123444555566666677888888888877654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00017 Score=64.60 Aligned_cols=232 Identities=16% Similarity=-0.007 Sum_probs=156.0
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CC--HHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GS--TLAMVDAG 144 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~--~~a~~~lg 144 (336)
.+..+...+..|+|.+|..+..++.+.. ..+...+.+|---.++ .+|.+.|=.|+.++++. ++ .......+
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~---e~p~l~~l~aA~AA~q---rgd~~~an~yL~eaae~~~~~~l~v~ltra 160 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHG---EQPVLAYLLAAEAAQQ---RGDEDRANRYLAEAAELAGDDTLAVELTRA 160 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcC---cchHHHHHHHHHHHHh---cccHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 3556666688899999986666655443 3466666666655554 58999999999999998 33 44566778
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----------------------HHHHHHHHHHH--------
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----------------------EEAVKLLYQAS-------- 192 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----------------------~~A~~~~~ka~-------- 192 (336)
.+....||++.|..-..++.+. .+++++...-.+|.. +++..+=+++.
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999998865 577777666666665 22222222221
Q ss_pred Hc------------------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCcccH
Q 019734 193 IA------------------GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSFGEGLPLSH 253 (336)
Q Consensus 193 ~~------------------~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~g~~~~~ 253 (336)
+. .++.....++.-+.. .++.++|.++.+.++... |+. ...+..+. ..++.
T Consensus 241 ~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~----l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l-----~~~d~ 310 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR----LGDHDEAQEIIEDALKRQWDPR-LCRLIPRL-----RPGDP 310 (400)
T ss_pred ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhccChh-HHHHHhhc-----CCCCc
Confidence 11 123333333434444 688999999999988764 444 33333333 13355
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH-HHHHHHHHHHhhcC
Q 019734 254 RQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET-AADHVKNVILQQLS 315 (336)
Q Consensus 254 ~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~-~a~~~~~~~~~~~~ 315 (336)
..=++..++.+.. +++.....||.+++..+.+.+|..+|+.|+...+. .....++..+..+.
T Consensus 311 ~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g 375 (400)
T COG3071 311 EPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLG 375 (400)
T ss_pred hHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcC
Confidence 5555555555553 56788899999999999999999999999987644 44445566655553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.1e-05 Score=73.67 Aligned_cols=248 Identities=16% Similarity=0.047 Sum_probs=169.7
Q ss_pred CChhHHhhhHHHHHHHHHh---CCCCCHHHHHHHHHHHhcCCCC-------cCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 77 TLPQLRAASLVCKSWNDAL---RPLREAMVLLRWGKRFKHGRGV-------RKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~---~~~~~~~a~~~lg~~~~~g~g~-------~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
..+.++++.+.+.+..... ...-.+.++..+|++|-..-.. ..-..+++..+++|++. .|+.+.+.++
T Consensus 406 ~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~la 485 (799)
T KOG4162|consen 406 RLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLA 485 (799)
T ss_pred chhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 4577888887777777632 1223678899999998763221 12267889999999987 5899999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH----HHHHHHHHHHHHc-CC-----------------HHH
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL---GDPAGQFNLGISYLQ----EEAVKLLYQASIA-GH-----------------VRA 199 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~-~~-----------------~~a 199 (336)
.-|...++.+.|..+.+++++. .++.+|..|+.++.. ..|+....-+++. ++ ++.
T Consensus 486 lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~ 565 (799)
T KOG4162|consen 486 LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREE 565 (799)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHH
Confidence 9999999999999999999877 478999999999876 3444443333321 11 000
Q ss_pred --------------------------------------------------------------------------------
Q 019734 200 -------------------------------------------------------------------------------- 199 (336)
Q Consensus 200 -------------------------------------------------------------------------------- 199 (336)
T Consensus 566 ~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~ 645 (799)
T KOG4162|consen 566 ALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSL 645 (799)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCch
Confidence
Q ss_pred -------HHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH--cCC
Q 019734 200 -------QYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD--CGH 268 (336)
Q Consensus 200 -------~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~--~~~ 268 (336)
+...+..+.. .++.++|..++.++.. .-.+..++..|.++.. .+...+|.+.|..|+. .++
T Consensus 646 ~~~~~~lwllaa~~~~~----~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~----~~~~~EA~~af~~Al~ldP~h 717 (799)
T KOG4162|consen 646 WYLLQKLWLLAADLFLL----SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEV----KGQLEEAKEAFLVALALDPDH 717 (799)
T ss_pred HHHHHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHH----HHhhHHHHHHHHHHHhcCCCC
Confidence 0001111111 1222333333333321 1234456777777753 4489999999999976 477
Q ss_pred HHHHHHHHHHhhccCCHHHHHH--HHHHHHHcC--cHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 269 GKAQLEHGLGLFTEGEMMKAVV--YLELATRAG--ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 269 ~~a~~~lg~~~~~~~~~~~A~~--~~~~A~~~~--~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
+.+...||.++.+.|+..-|.+ .+..|++.+ +.++++.++.++..+ ++.++|-++++...++.+
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~--Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL--GDSKQAAECFQAALQLEE 785 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--cchHHHHHHHHHHHhhcc
Confidence 8899999999999998888877 999999986 678888888877664 556677777766654433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-06 Score=84.84 Aligned_cols=213 Identities=18% Similarity=0.120 Sum_probs=161.0
Q ss_pred cCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC-CCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCC
Q 019734 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR-GVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD 151 (336)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~-g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~ 151 (336)
++++..+.++.-.+.+...+.-+ -+..++..+..+..-. ...++.+.|+..|-++++.+ -+.++..||.+|..--
T Consensus 429 s~nd~slselswc~~~~~ek~md--va~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~ 506 (1238)
T KOG1127|consen 429 SFNDDSLSELSWCLPRALEKMMD--VALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSD 506 (1238)
T ss_pred hcCchhhhHhhHHHHHhHHhhhh--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 35666776765555443333222 2333333333332211 22578999999999999985 5788999999999888
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHcC----CHHHHHHHHHHHhcCCCCccCHHHHH
Q 019734 152 KKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIAG----HVRAQYQLALCLHRGRGVDFNLQEAA 221 (336)
Q Consensus 152 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~----~~~a~~~lg~~~~~g~g~~~~~~~A~ 221 (336)
|...|..+|++|.+. +++++.-.++..|.. +.|......+.+.. -...+..+|..|.+ .++...|+
T Consensus 507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe----a~n~h~aV 582 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLE----AHNLHGAV 582 (1238)
T ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccC----ccchhhHH
Confidence 999999999999866 678888889999988 77776655555443 23456668888888 89999999
Q ss_pred HHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 222 RWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 222 ~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
.+|+.|+ ++.|..++..||.+|.. .| ++.-|++.|.+|.... +..+.|..+.+....|++.+|+..+.+.+.
T Consensus 583 ~~fQsALR~dPkD~n~W~gLGeAY~~-sG---ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 583 CEFQSALRTDPKDYNLWLGLGEAYPE-SG---RYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHh-cC---ceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999996 46789999999999965 33 8999999999998764 456678899999999999999999988764
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.4e-06 Score=75.93 Aligned_cols=165 Identities=21% Similarity=0.225 Sum_probs=122.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCccCHH
Q 019734 151 DKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFNLQ 218 (336)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~----~~----~~a~~~lg~~~~~g~g~~~~~~ 218 (336)
.++++|...|.+|.. +|.. ++|..+|.++++. ++ ..++.+.+.+|.. .+++
T Consensus 29 ~~~e~Aa~~y~~Aa~------------~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-----~~~~ 91 (282)
T PF14938_consen 29 PDYEEAADLYEKAAN------------CFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-----GDPD 91 (282)
T ss_dssp HHHHHHHHHHHHHHH------------HHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-----TTHH
T ss_pred CCHHHHHHHHHHHHH------------HHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----hCHH
Confidence 489999999998863 2333 6777777777542 32 3567778888876 3999
Q ss_pred HHHHHHHHHHH----CCC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC----HHHHHHHHHHhhcc
Q 019734 219 EAARWYLRAAE----GGY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGLGLFTE 282 (336)
Q Consensus 219 ~A~~~~~~a~~----~~~----~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~ 282 (336)
+|+.+|++|++ .|. ...+..+|.+|....| ++++|+.+|++|++. +. .....+++.++...
T Consensus 92 ~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~---d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 92 EAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG---DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT-----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 99999999975 354 5678899999965423 999999999999983 32 23447899999999
Q ss_pred CCHHHHHHHHHHHHHcC------cHHH-HHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 283 GEMMKAVVYLELATRAG------ETAA-DHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 283 ~~~~~A~~~~~~A~~~~------~~~a-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
|++++|+..|++.+... ...+ ...+..++-+|..++...|...++.+....|+
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999998631 2233 34567788888888899999999999877663
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.64 E-value=8e-07 Score=72.60 Aligned_cols=102 Identities=15% Similarity=0.112 Sum_probs=77.9
Q ss_pred CCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHhcC
Q 019734 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--G---STLAMVDAGLMYWEM 150 (336)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~---~~~a~~~lg~~~~~~ 150 (336)
|-.+++..+.......++.......+.+++.+|.++.. .+++++|+.+|++++.. + .+.+++++|.++...
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~ 85 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQS----EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN 85 (168)
T ss_pred ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc
Confidence 34444555544444444433333457888999999987 58999999999999876 2 245899999999999
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 019734 151 DKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ 181 (336)
Q Consensus 151 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 181 (336)
|++++|+.+|++++.. ....++.++|.++..
T Consensus 86 g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~ 118 (168)
T CHL00033 86 GEHTKALEYYFQALERNPFLPQALNNMAVICHY 118 (168)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 9999999999999865 667888888888874
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.1e-06 Score=72.72 Aligned_cols=152 Identities=20% Similarity=0.124 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
+..+ +++...+.. .++-+.+..+..+++.. .+.+....+|......|++.+|+..+++++.. .|.+++..+
T Consensus 66 d~~i-~~~a~a~~~----~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 66 DLSI-AKLATALYL----RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred hHHH-HHHHHHHHh----cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 5555 666666555 35666666666665543 34556666888888888888888888888755 788888888
Q ss_pred HHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCC
Q 019734 176 GISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGE 247 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~ 247 (336)
|.+|.+ +.|..-|.++++. +.+....|||..|.- .+|+..|..++..+... .+...-.+|+.+.- ..
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L----~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~-~~ 215 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL----RGDLEDAETLLLPAYLSPAADSRVRQNLALVVG-LQ 215 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH----cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHh-hc
Confidence 888888 8888888888775 688888889888876 78899999999888544 46777788887773 23
Q ss_pred CCcccHHHHHHHHHHHH
Q 019734 248 GLPLSHRQARKWMKRAA 264 (336)
Q Consensus 248 g~~~~~~~A~~~~~~a~ 264 (336)
+++++|.....+-+
T Consensus 216 ---g~~~~A~~i~~~e~ 229 (257)
T COG5010 216 ---GDFREAEDIAVQEL 229 (257)
T ss_pred ---CChHHHHhhccccc
Confidence 38888877765543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.7e-06 Score=69.75 Aligned_cols=80 Identities=21% Similarity=0.364 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHH
Q 019734 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPA 170 (336)
Q Consensus 98 ~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~ 170 (336)
...+.+++.+|..+.. .+++++|+.+|++++... ...+++.+|.++...|++++|+.+|.+++.. .++.
T Consensus 32 ~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 32 AKEAFVYYRDGMSAQA----DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred hhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 4577889999999988 589999999999998752 2468999999999999999999999999865 5677
Q ss_pred HHHHHHHHHHH
Q 019734 171 GQFNLGISYLQ 181 (336)
Q Consensus 171 a~~~Lg~~~~~ 181 (336)
++..+|.++..
T Consensus 108 ~~~~lg~~~~~ 118 (172)
T PRK02603 108 ALNNIAVIYHK 118 (172)
T ss_pred HHHHHHHHHHH
Confidence 77777777764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.57 E-value=6e-05 Score=71.30 Aligned_cols=88 Identities=14% Similarity=0.049 Sum_probs=68.4
Q ss_pred CCCCChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCH
Q 019734 60 DFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GST 137 (336)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~ 137 (336)
.++..++.+..++..+...|+.++|....+.-++.. ......|+.+|+++.. .+++++|+++|+.|+.. +|.
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~----dK~Y~eaiKcy~nAl~~~~dN~ 109 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRS----DKKYDEAIKCYRNALKIEKDNL 109 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhh----hhhHHHHHHHHHHHHhcCCCcH
Confidence 345556677778888888999999988888777754 3478899999999998 69999999999999986 467
Q ss_pred HHHHHHHHHHhcCCCH
Q 019734 138 LAMVDAGLMYWEMDKK 153 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~ 153 (336)
..+..|+.+..+.+++
T Consensus 110 qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 110 QILRDLSLLQIQMRDY 125 (700)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7766666655554433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.4e-07 Score=63.58 Aligned_cols=63 Identities=22% Similarity=0.337 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD-KKEAAISLYRQAAVL 166 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~ 166 (336)
++..++.+|.++.. .+++++|+.+|+++++. .++.+++++|.+|...| ++++|+..|+++++.
T Consensus 2 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ----QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 67889999999999 69999999999999987 57899999999999999 799999999999865
|
... |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.4e-05 Score=79.74 Aligned_cols=248 Identities=13% Similarity=0.021 Sum_probs=153.2
Q ss_pred HHhcCCChhHHhhhHHHHHHHHHhCCCC---CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC----HHHH
Q 019734 72 IAASFTLPQLRAASLVCKSWNDALRPLR---EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAM 140 (336)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~ 140 (336)
+..++..|++.+|...+...++..+... ...+...+|.++.. .+++++|..+++++... ++ ..+.
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~----~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~ 534 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC----KGELARALAMMQQTEQMARQHDVYHYALWSL 534 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 3445678899999888888776543321 13456678888766 58999999999998854 22 2456
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc----CC------HHHHHHHHHHHHH----HHHHHHHHHHHHc----C---CHHH
Q 019734 141 VDAGLMYWEMDKKEAAISLYRQAAVL----GD------PAGQFNLGISYLQ----EEAVKLLYQASIA----G---HVRA 199 (336)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~----~~------~~a~~~Lg~~~~~----~~A~~~~~ka~~~----~---~~~a 199 (336)
..+|.++...|++++|..++.++++. +. ......+|.++.. ++|..+++++++. + ...+
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 78899999999999999999998753 11 1234456777766 8999999988653 1 2445
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHC----CC-HHHHH---HHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CH
Q 019734 200 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY-VRAMY---NTSLCYSFGEGLPLSHRQARKWMKRAADCG--HG 269 (336)
Q Consensus 200 ~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~----~~-~~a~~---~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~--~~ 269 (336)
+..+|.++.. .++++.|...+.++... +. ..... .+...+....| +.++|..|+....... ..
T Consensus 615 ~~~la~~~~~----~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~A~~~l~~~~~~~~~~~ 687 (903)
T PRK04841 615 LAMLAKISLA----RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG---DKEAAANWLRQAPKPEFANN 687 (903)
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC---CHHHHHHHHHhcCCCCCccc
Confidence 6667888776 78999999999888432 11 11111 11111111122 6667777765544321 11
Q ss_pred ----HHHHHHHHHhhccCCHHHHHHHHHHHHHc----Cc--HHHHHHHHHHHhhcChhcHHHHHHHHHHhh
Q 019734 270 ----KAQLEHGLGLFTEGEMMKAVVYLELATRA----GE--TAADHVKNVILQQLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 270 ----~a~~~lg~~~~~~~~~~~A~~~~~~A~~~----~~--~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 330 (336)
.....++.++...|++++|...+++++.. +. ..+...+.........++.++|.....+..
T Consensus 688 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 688 HFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11345666777777777777777777653 21 122222223333334455555655555544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.2e-06 Score=78.67 Aligned_cols=100 Identities=13% Similarity=0.089 Sum_probs=87.0
Q ss_pred HHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 019734 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYL 180 (336)
Q Consensus 105 ~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~ 180 (336)
...|..++. .+++++|+.+|++|+.. +++.+++++|.+|...|++++|+..++++++. +++.+++.+|.++.
T Consensus 6 ~~~a~~a~~----~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 6 EDKAKEAFV----DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 344555555 58999999999999987 58999999999999999999999999999865 78999999999998
Q ss_pred H----HHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019734 181 Q----EEAVKLLYQASIA--GHVRAQYQLALCLH 208 (336)
Q Consensus 181 ~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~ 208 (336)
. ++|+.+|+++++. +++.+...++.|..
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8 9999999999876 58888888888844
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.9e-06 Score=66.16 Aligned_cols=124 Identities=15% Similarity=0.086 Sum_probs=73.9
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-C----HHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-S----TLAMVD 142 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~-~----~~a~~~ 142 (336)
...+...+..++...+...+..+.+..+..+ -..+.+.+|.++.. .+++++|+..|++++... + +.+.+.
T Consensus 15 y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~----~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE----QGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 3444444556666666666666666655531 24566667777766 467777777777777653 2 346666
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHH
Q 019734 143 AGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAAR 222 (336)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~ 222 (336)
|+.++...|++++|+..+....... -.+.+...+|.+|.. .+++++|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~---------------------------~~~~~~~~~Gdi~~~----~g~~~~A~~ 139 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA---------------------------FKALAAELLGDIYLA----QGDYDEARA 139 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc---------------------------hHHHHHHHHHHHHHH----CCCHHHHHH
Confidence 7777777777777777765532211 122334445566555 667777777
Q ss_pred HHHHH
Q 019734 223 WYLRA 227 (336)
Q Consensus 223 ~~~~a 227 (336)
.|++|
T Consensus 140 ~y~~A 144 (145)
T PF09976_consen 140 AYQKA 144 (145)
T ss_pred HHHHh
Confidence 77665
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.9e-07 Score=63.63 Aligned_cols=81 Identities=11% Similarity=0.028 Sum_probs=60.7
Q ss_pred ChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHH
Q 019734 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEA 155 (336)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~ 155 (336)
.++++.|+..+.++++..+...+...++.||.+|.. .+++++|+.++++ ... .+....+.+|.++...|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 467888888888888887742256677778888888 5888888888887 332 456777888888888888888
Q ss_pred HHHHHHHH
Q 019734 156 AISLYRQA 163 (336)
Q Consensus 156 A~~~~~~a 163 (336)
|+..|.++
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 88888765
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.1e-06 Score=78.35 Aligned_cols=204 Identities=16% Similarity=0.023 Sum_probs=155.3
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMY 147 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~ 147 (336)
...+-..+..|=..+|..++.+.. .+-..-.||.. .|+..+|.....+-++. .++..+..||.+.
T Consensus 402 ~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~----lg~~~kaeei~~q~lek~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLL----LGQHGKAEEINRQELEKDPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHH----hcccchHHHHHHHHhcCCCcchhHHHhhhhc
Confidence 333444456666677765555433 33444566666 46888898888888874 5777778888887
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHH
Q 019734 148 WEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAA 221 (336)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~ 221 (336)
...-=+++|.++.+.- +..|...+|..... .++..+|+.+++. .....||.+|.+..+ ..++..|.
T Consensus 468 ~d~s~yEkawElsn~~----sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq----lek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYI----SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ----LEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhh----hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH----HhhhHHHH
Confidence 6665556665555443 23466777766655 8999999999776 578999999999998 89999999
Q ss_pred HHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 222 RWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 222 ~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
..|.+++ ++++..++.|++..|... +...+|...+++|++- +++..+.|.-.+-.+.|++++|+..|++-+.
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~----~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRL----KKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHH----hhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999985 568999999999999863 4889999999999874 6677778888888899999999999999876
Q ss_pred c
Q 019734 298 A 298 (336)
Q Consensus 298 ~ 298 (336)
.
T Consensus 616 ~ 616 (777)
T KOG1128|consen 616 L 616 (777)
T ss_pred h
Confidence 4
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.7e-06 Score=66.75 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CC
Q 019734 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GH 268 (336)
Q Consensus 196 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~ 268 (336)
...+++++|..+.. .+++++|+.+|++++... ...+++++|.++.... ++++|+.+|++++.. .+
T Consensus 34 ~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 34 EAFVYYRDGMSAQA----DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG----EHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCccc
Confidence 45567777777776 677888888888776432 2457778888876532 788888888888764 45
Q ss_pred HHHHHHHHHHhhccCC
Q 019734 269 GKAQLEHGLGLFTEGE 284 (336)
Q Consensus 269 ~~a~~~lg~~~~~~~~ 284 (336)
..++..+|.++...|+
T Consensus 106 ~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 106 PSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 6667777777777665
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.2e-05 Score=64.13 Aligned_cols=53 Identities=6% Similarity=-0.155 Sum_probs=29.4
Q ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHc-----CCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 019734 238 NTSLCYSFGEGLPLSHRQARKWMKRAADC-----GHGKAQLEHGLGLFTEGEMMKAVVYLEL 294 (336)
Q Consensus 238 ~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 294 (336)
.+|..|.+.. .+.-|+.-++..++. ...++.+.++..|...|..++|..+...
T Consensus 180 ~ia~~Y~~~~----~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 SVAEYYTKRG----AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHcC----chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4455554422 566666666666652 2245556666666666666666665443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-06 Score=77.60 Aligned_cols=135 Identities=10% Similarity=-0.091 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHHc--CCHHHH
Q 019734 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFG-EGLPLSHRQARKWMKRAADC--GHGKAQ 272 (336)
Q Consensus 196 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~-~g~~~~~~~A~~~~~~a~~~--~~~~a~ 272 (336)
..+.....-.+|.. .++++.|.+.++..-+.++-.....|+..|..- .| ...+.+|...|+...+. ..+...
T Consensus 130 ~lE~~al~Vqi~L~----~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g-~e~~~~A~y~f~El~~~~~~t~~~l 204 (290)
T PF04733_consen 130 SLELLALAVQILLK----MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG-GEKYQDAFYIFEELSDKFGSTPKLL 204 (290)
T ss_dssp CHHHHHHHHHHHHH----TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT-TTCCCHHHHHHHHHHCCS--SHHHH
T ss_pred cccHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhccCCCHHHH
Confidence 34444444444444 566666776666665544444444444433221 11 13566777777776554 234445
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHcCc--HHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCCC
Q 019734 273 LEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 336 (336)
Q Consensus 273 ~~lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (336)
+.++.++..+|++++|...++.|++.++ ++...++..+.. ..+...+.+.+...++++.+|.|
T Consensus 205 ng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~-~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 205 NGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL-HLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH-HTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHhCCCC
Confidence 5666777777777777777777765543 333333322222 23333345556666677667666
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.6e-06 Score=59.43 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccC-CHHHHHHHHHHHHHcC
Q 019734 232 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEG-EMMKAVVYLELATRAG 299 (336)
Q Consensus 232 ~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~-~~~~A~~~~~~A~~~~ 299 (336)
++..+..+|.++.... ++++|+.+|+++++. .++.+++++|.+|...| ++++|+..|++++...
T Consensus 2 ~a~~~~~~g~~~~~~~----~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQG----DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 4566777777776533 788888888888774 45667788888888887 6888888888877654
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.9e-06 Score=62.07 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=63.4
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCC-CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C---CHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPL-REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--G---STLAM 140 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~---~~~a~ 140 (336)
..+..+...+..|++.+|...+..+.+..++. ..+.+++.+|.++.. .+++++|+.+|++++.. + .+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA----QGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 34555556666777777777777777665542 225567777777777 46777777777777654 2 24567
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 141 VDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
+.+|.++...+++++|+.+|.++++.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 77777777777777777777777654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-05 Score=61.41 Aligned_cols=88 Identities=16% Similarity=0.196 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--C---CHHH
Q 019734 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS-----TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--G---DPAG 171 (336)
Q Consensus 102 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~-----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~---~~~a 171 (336)
.++|.+|.++.. .|+.++|+.+|++|+..|- ..++..+|..+...|++++|+..+++++.. + +...
T Consensus 2 ~~~~~~A~a~d~----~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l 77 (120)
T PF12688_consen 2 RALYELAWAHDS----LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAAL 77 (120)
T ss_pred chHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHH
Confidence 467888888877 6889999999999988642 457788999999999999999999988754 3 4455
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHH
Q 019734 172 QFNLGISYLQ----EEAVKLLYQASI 193 (336)
Q Consensus 172 ~~~Lg~~~~~----~~A~~~~~ka~~ 193 (336)
...++.++.. ++|+.++..++.
T Consensus 78 ~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 78 RVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5556666655 666666666543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.7e-06 Score=61.83 Aligned_cols=97 Identities=19% Similarity=0.081 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC--C---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--C--
Q 019734 197 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--Y---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--G-- 267 (336)
Q Consensus 197 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~--~---~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~-- 267 (336)
++.++.+|..+.. .+++++|+..|++++... + ..+++.+|.++.... ++++|+.+|++++.. +
T Consensus 2 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVLK----AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG----KYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHCCCCC
Confidence 4678889999888 899999999999997642 2 578999999997633 999999999999874 2
Q ss_pred -CHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH
Q 019734 268 -HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 301 (336)
Q Consensus 268 -~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~ 301 (336)
.+.+.+.+|.++...|++++|..+|+++++..+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 2567899999999999999999999999987544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.8e-05 Score=64.55 Aligned_cols=92 Identities=16% Similarity=0.113 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCH
Q 019734 197 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--G---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHG 269 (336)
Q Consensus 197 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~---~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~ 269 (336)
...++++|.++.. .+++++|+.+|++++.. + .+.+++++|.+|... +++++|+..|++++.. ...
T Consensus 35 a~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~----g~~~eA~~~~~~Al~~~~~~~ 106 (168)
T CHL00033 35 AFTYYRDGMSAQS----EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN----GEHTKALEYYFQALERNPFLP 106 (168)
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcCcH
Confidence 4556777777776 67788888888888644 2 234778888888653 3788888888888764 445
Q ss_pred HHHHHHHHHhh-------ccCCHHHHHHHHHHHH
Q 019734 270 KAQLEHGLGLF-------TEGEMMKAVVYLELAT 296 (336)
Q Consensus 270 ~a~~~lg~~~~-------~~~~~~~A~~~~~~A~ 296 (336)
..+.++|.++. ..|+++.|..++++|+
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 66677777777 6777775555555443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.7e-05 Score=71.49 Aligned_cols=142 Identities=17% Similarity=0.139 Sum_probs=113.8
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (336)
..-.+...+..+++++|......+++..|+ ++-.+-..|.++.. .++.++|.+.+++++.+ +.+....++|.
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~--N~~~~~~~~~i~~~----~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQPD--NPYYLELAGDILLE----ANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 344556667888889999888888888886 88888889999998 68999999999999988 45778899999
Q ss_pred HHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 019734 146 MYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARW 223 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~ 223 (336)
.|..+|++.+|+..++.... ++++..|..|+..|.. ..+..++....+..|.. .+++++|+..
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~-----------~g~~~~a~~A~AE~~~~----~G~~~~A~~~ 447 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE-----------LGNRAEALLARAEGYAL----AGRLEQAIIF 447 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH-----------hCchHHHHHHHHHHHHh----CCCHHHHHHH
Confidence 99999999999999999874 4789999998888853 12234555556666665 6778888888
Q ss_pred HHHHHHC
Q 019734 224 YLRAAEG 230 (336)
Q Consensus 224 ~~~a~~~ 230 (336)
+.++-+.
T Consensus 448 l~~A~~~ 454 (484)
T COG4783 448 LMRASQQ 454 (484)
T ss_pred HHHHHHh
Confidence 8777543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.3e-05 Score=76.56 Aligned_cols=216 Identities=13% Similarity=0.034 Sum_probs=150.5
Q ss_pred HHhcCCChhHHhhhHHHHHHHHHhCCCCC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC------H
Q 019734 72 IAASFTLPQLRAASLVCKSWNDALRPLRE----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS------T 137 (336)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~~------~ 137 (336)
+..+...|++++|...+..........+. ..++..+|.++.. .+++++|..+++++... +. .
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA----QGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 33446789999998888877766554333 3456778888877 58999999999998764 11 2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHH----HHHHHHHHHHHHc----CC-HHHHH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL----G---DPAGQFNLGISYLQ----EEAVKLLYQASIA----GH-VRAQY 201 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~---~~~a~~~Lg~~~~~----~~A~~~~~ka~~~----~~-~~a~~ 201 (336)
.....+|.+++..|++++|...+.+++.. + ...++..+|.++.. +.|...+.++... +. .....
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 23557888999999999999999998753 1 23455567777766 8898988888543 11 11111
Q ss_pred H---HH-HHHhcCCCCccCHHHHHHHHHHHHHCC--CH----HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----C
Q 019734 202 Q---LA-LCLHRGRGVDFNLQEAARWYLRAAEGG--YV----RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----G 267 (336)
Q Consensus 202 ~---lg-~~~~~g~g~~~~~~~A~~~~~~a~~~~--~~----~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~ 267 (336)
. +. ..+.. .++.+.|..++....... .. .....++.++.. .| ++++|...+++++.. +
T Consensus 654 ~~~~~~~~~~~~----~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~-~g---~~~~A~~~l~~al~~~~~~g 725 (903)
T PRK04841 654 NADKVRLIYWQM----TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL-LG---QFDEAEIILEELNENARSLR 725 (903)
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHHHHHhC
Confidence 1 11 22222 578889999987754322 11 113467777754 23 899999999999873 2
Q ss_pred C----HHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 268 H----GKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 268 ~----~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
. ..++..+|.++...|+.++|..++.+|++..
T Consensus 726 ~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 726 LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 2 3466889999999999999999999999854
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.9e-06 Score=58.58 Aligned_cols=93 Identities=23% Similarity=0.173 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHH
Q 019734 199 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLE 274 (336)
Q Consensus 199 a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~ 274 (336)
+++++|.++.. .+++.+|+.+++++++. .+..+++.+|.++... +++++|+.++++++.. .+...++.
T Consensus 2 ~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 73 (100)
T cd00189 2 ALLNLGNLYYK----LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL----GKYEEALEDYEKALELDPDNAKAYYN 73 (100)
T ss_pred HHHHHHHHHHH----HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCcchhHHHH
Confidence 46778888877 78899999999988764 4567888899988653 3889999999998875 44567789
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 275 HGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 275 lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
+|.++...|++++|..++.++++..
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHccC
Confidence 9999999999999999998887654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.7e-06 Score=65.04 Aligned_cols=92 Identities=11% Similarity=-0.030 Sum_probs=64.4
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM 146 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~ 146 (336)
...+...+..|++.+|..+++-+.--.+. +++.++.||.++.. .+++++|+..|..|... +++...+..|.+
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~----~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQL----KKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 34445567777777776666655554433 67777777777777 57777777777777655 577777777777
Q ss_pred HhcCCCHHHHHHHHHHHHHc
Q 019734 147 YWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~ 166 (336)
|...|+.+.|+..|..+++.
T Consensus 115 ~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHhCCHHHHHHHHHHHHhC
Confidence 77777777777777777764
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.1e-05 Score=68.31 Aligned_cols=129 Identities=11% Similarity=-0.042 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHH---Hc--CCHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHc--
Q 019734 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGA---AR--GSTLAMVDAGLMYWEM---------DKKEAAISLYRQAAVL-- 166 (336)
Q Consensus 103 a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~---~~--~~~~a~~~lg~~~~~~---------~~~~~A~~~~~~a~~~-- 166 (336)
..|..|..... .+.+.+.+.|..+|++|+ .. +.+.++..++.+++.. .+..+|+...++|++.
T Consensus 257 d~ylrg~~~~~-~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~ 335 (458)
T PRK11906 257 DEMLAGKKELY-DFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT 335 (458)
T ss_pred HHHHHHHHHhh-ccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC
Confidence 34666766655 456778889999999998 44 3577777777777643 2344555555555544
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
Q 019734 167 GDPAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA--EGGYVRAMYNTSLCYS 244 (336)
Q Consensus 167 ~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~ 244 (336)
+|+.+++.+|.++.. .++++.|..+|++|. .++.+.+++..|.+..
T Consensus 336 ~Da~a~~~~g~~~~~--------------------------------~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~ 383 (458)
T PRK11906 336 VDGKILAIMGLITGL--------------------------------SGQAKVSHILFEQAKIHSTDIASLYYYRALVHF 383 (458)
T ss_pred CCHHHHHHHHHHHHh--------------------------------hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 455555555554433 344555555555553 2344555555555443
Q ss_pred cCCCCcccHHHHHHHHHHHHHcCC
Q 019734 245 FGEGLPLSHRQARKWMKRAADCGH 268 (336)
Q Consensus 245 ~~~g~~~~~~~A~~~~~~a~~~~~ 268 (336)
. .++.++|..++++++...+
T Consensus 384 ~----~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 384 H----NEKIEEARICIDKSLQLEP 403 (458)
T ss_pred H----cCCHHHHHHHHHHHhccCc
Confidence 2 1155555555555555433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00027 Score=59.81 Aligned_cols=154 Identities=18% Similarity=0.025 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH--HH-HHHHHHHHH---HHHHHHHHH
Q 019734 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPA--GQ-FNLGISYLQ---EEAVKLLYQ 190 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~--a~-~~Lg~~~~~---~~A~~~~~k 190 (336)
+..+-|..++.+.-.. ++....-.-|..+...|.+++|+++|...++.+... .+ -.++.+-.. -+|++.+..
T Consensus 66 ~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~ 145 (289)
T KOG3060|consen 66 GRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNE 145 (289)
T ss_pred cchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4556666666654433 455555555666666677777777777766543221 11 223333333 555555555
Q ss_pred HHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019734 191 ASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 266 (336)
Q Consensus 191 a~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~ 266 (336)
-++. ++.+||..|+.+|.. .+++.+|.-+|+..+ ++-++..+..+|.++....| ..+..-|..+|.++++.
T Consensus 146 YL~~F~~D~EAW~eLaeiY~~----~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg-~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 146 YLDKFMNDQEAWHELAEIYLS----EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG-AENLELARKYYERALKL 220 (289)
T ss_pred HHHHhcCcHHHHHHHHHHHHh----HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHh
Confidence 5553 678888888888887 788888888888763 45566667777777654433 66788888888888876
Q ss_pred CCHHHHHHHHH
Q 019734 267 GHGKAQLEHGL 277 (336)
Q Consensus 267 ~~~~a~~~lg~ 277 (336)
......-.+|.
T Consensus 221 ~~~~~ral~GI 231 (289)
T KOG3060|consen 221 NPKNLRALFGI 231 (289)
T ss_pred ChHhHHHHHHH
Confidence 55433333443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0014 Score=59.02 Aligned_cols=211 Identities=11% Similarity=-0.047 Sum_probs=144.0
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCC-CCH--HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPL-REA--MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDA 143 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~--~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~l 143 (336)
+..+....+.|+...+ ..++..+++. ++. ......+.+... .+|++.|..-..++.+. .++......
T Consensus 122 l~aA~AA~qrgd~~~a----n~yL~eaae~~~~~~l~v~ltrarlll~----~~d~~aA~~~v~~ll~~~pr~~~vlrLa 193 (400)
T COG3071 122 LLAAEAAQQRGDEDRA----NRYLAEAAELAGDDTLAVELTRARLLLN----RRDYPAARENVDQLLEMTPRHPEVLRLA 193 (400)
T ss_pred HHHHHHHHhcccHHHH----HHHHHHHhccCCCchHHHHHHHHHHHHh----CCCchhHHHHHHHHHHhCcCChHHHHHH
Confidence 4455555677888888 4555555443 333 334445555555 57899999999988887 488888888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc---CCHHH-----------------------------------------HHHHHHHH
Q 019734 144 GLMYWEMDKKEAAISLYRQAAVL---GDPAG-----------------------------------------QFNLGISY 179 (336)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~---~~~~a-----------------------------------------~~~Lg~~~ 179 (336)
-.+|...|++.....++.+..+. ++.++ ...++.-+
T Consensus 194 ~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~l 273 (400)
T COG3071 194 LRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERL 273 (400)
T ss_pred HHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHH
Confidence 88998888888777776555432 11111 11111111
Q ss_pred HH----HHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccc
Q 019734 180 LQ----EEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLS 252 (336)
Q Consensus 180 ~~----~~A~~~~~ka~~~~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~ 252 (336)
.. ++|.++.+.+++.. ++.-...++.+ ..+|+..=++..++.+. +.++..+..||.+|.+ .+.
T Consensus 274 i~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l------~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k----~~~ 343 (400)
T COG3071 274 IRLGDHDEAQEIIEDALKRQWDPRLCRLIPRL------RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK----NKL 343 (400)
T ss_pred HHcCChHHHHHHHHHHHHhccChhHHHHHhhc------CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH----hhH
Confidence 11 77777777777653 55522222222 24566666666666544 4678999999999986 449
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 253 HRQARKWMKRAADCG-HGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 253 ~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
+.+|..+++.|+... ....+..+|.++...|+..+|-..+++++.
T Consensus 344 w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 344 WGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999874 466778999999999999999999999974
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-05 Score=56.82 Aligned_cols=57 Identities=25% Similarity=0.366 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 104 ~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
++.+|.++.. .+++++|+.+|+++++. .+..+++.+|.++...+++++|+.+|.+++
T Consensus 3 ~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYK----LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHH----HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 34444455444444443 123344444444444444444444444444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00046 Score=58.49 Aligned_cols=161 Identities=12% Similarity=-0.008 Sum_probs=122.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHcCCHH---HHHHHHHHHhcCC
Q 019734 141 VDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIAGHVR---AQYQLALCLHRGR 211 (336)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~~~---a~~~lg~~~~~g~ 211 (336)
-++.......++.+-|..++++.-+. ++....-.-|+.+.. ++|+++|+..++.+..+ --..++.+-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~G- 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQG- 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcC-
Confidence 34555666678999999999886544 777777777777766 99999999998875322 224566666654
Q ss_pred CCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHhhccC---C
Q 019734 212 GVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEG---E 284 (336)
Q Consensus 212 g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~---~ 284 (336)
...+|++-+..-++. +|.++|..|+.+|.. .+++++|..+|+..+-.. ++.-+..||.+++-.| +
T Consensus 135 ----K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~----~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 135 ----KNLEAIKELNEYLDKFMNDQEAWHELAEIYLS----EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred ----CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 445888888888775 899999999999976 349999999999998653 4555578888888766 8
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHH
Q 019734 285 MMKAVVYLELATRAGETAADHVKNVI 310 (336)
Q Consensus 285 ~~~A~~~~~~A~~~~~~~a~~~~~~~ 310 (336)
++-|.++|.+|+...+......+++.
T Consensus 207 ~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 207 LELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 99999999999998765555444443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.1e-05 Score=66.68 Aligned_cols=155 Identities=17% Similarity=0.057 Sum_probs=124.5
Q ss_pred HHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CH------
Q 019734 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST------ 137 (336)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~------ 137 (336)
...+-++--..-.+++.+|+......++..+. +.++++.-|.++.. ..+.++|+.+|.+++.++ +.
T Consensus 170 ~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~--n~~al~vrg~~~yy----~~~~~ka~~hf~qal~ldpdh~~sk~~~ 243 (486)
T KOG0550|consen 170 KAKLLKAECLAFLGDYDEAQSEAIDILKLDAT--NAEALYVRGLCLYY----NDNADKAINHFQQALRLDPDHQKSKSAS 243 (486)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHhcccc--hhHHHHhccccccc----ccchHHHHHHHhhhhccChhhhhHHhHh
Confidence 33444555556778999999999999998777 89999999999888 689999999999999875 22
Q ss_pred ------HHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHH----HHHHHHHHHHHHcC--CHHH
Q 019734 138 ------LAMVDAGLMYWEMDKKEAAISLYRQAAVLG------DPAGQFNLGISYLQ----EEAVKLLYQASIAG--HVRA 199 (336)
Q Consensus 138 ------~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~--~~~a 199 (336)
+.+-.-|.-.++.|++.+|-+.|..|+..+ ++..+.+.+.+... .+|+.-...|++.+ +..+
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 334556777778899999999999998652 23344555555555 99999999998875 6789
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHC
Q 019734 200 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG 230 (336)
Q Consensus 200 ~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~ 230 (336)
+..-|.|+.. .+++.+|++.|+++.+.
T Consensus 324 ll~ra~c~l~----le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 324 LLRRANCHLA----LEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHhh
Confidence 9999999987 88999999999999765
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2e-05 Score=68.84 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=80.6
Q ss_pred HHHHHHHHhc-CCChhHHhhhHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C---CHH
Q 019734 66 FDVLNKIAAS-FTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--G---STL 138 (336)
Q Consensus 66 ~~~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~---~~~ 138 (336)
......+..+ +..+++.+|+..+..+++.-|+.. .+.++|.||.+|.. .+++++|+.+|++.+.. + .++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~----~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN----KGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 3446666665 567899999999999999988743 26899999999988 68999999999999875 2 578
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 139 AMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
+++.+|.++...|+.++|+..|++.++.
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998865
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.4e-06 Score=57.05 Aligned_cols=58 Identities=16% Similarity=0.293 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 105 ~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
+.+|..+.. .+++++|+..|+++++. +++.+++.+|.++...|++++|+.+|+++++.
T Consensus 1 ~~~a~~~~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQ----QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHH----CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356777777 58899999999998887 47888899999999999999999999888754
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0006 Score=65.26 Aligned_cols=221 Identities=16% Similarity=0.068 Sum_probs=149.1
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCC-CcCCHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG-VRKNLDKALDSFLKGAARG-STLAMVDAGLM 146 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g-~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~ 146 (336)
-.++.-++..|++++|...|+.+++..|+ +...+..|..+.-.-.+ ...+.+.-...|+.....- ...+...+...
T Consensus 42 E~rA~ll~kLg~~~eA~~~y~~Li~rNPd--n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~ 119 (517)
T PF12569_consen 42 EKRAELLLKLGRKEEAEKIYRELIDRNPD--NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLD 119 (517)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcc
Confidence 44555667889999999999999999888 77777766666522111 1235677777787665442 22333344444
Q ss_pred HhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHc------------CCH----HHHHH
Q 019734 147 YWEMDKKEA-AISLYRQAAVLGDPAGQFNLGISYLQ-------EEAVKLLYQASIA------------GHV----RAQYQ 202 (336)
Q Consensus 147 ~~~~~~~~~-A~~~~~~a~~~~~~~a~~~Lg~~~~~-------~~A~~~~~ka~~~------------~~~----~a~~~ 202 (336)
+..+.++.. +..++...+..|.|..+.+|-.+|.. ..-+.-|...++. ..+ .+++.
T Consensus 120 ~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~ 199 (517)
T PF12569_consen 120 FLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYF 199 (517)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHH
Confidence 444445554 44455667788999998888888875 2222222222110 111 35688
Q ss_pred HHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHH--HHHHH
Q 019734 203 LALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL--EHGLG 278 (336)
Q Consensus 203 lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~--~lg~~ 278 (336)
|+..|.. .+++++|+.+.++|++. ..++.++.-|.+|.+ .| ++.+|..+++.|-..+..+-+. ..+..
T Consensus 200 lAqhyd~----~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G---~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy 271 (517)
T PF12569_consen 200 LAQHYDY----LGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AG---DLKEAAEAMDEARELDLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHH----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 8888887 78999999999999876 457888888999965 33 9999999999998877766653 44566
Q ss_pred hhccCCHHHHHHHHHHHHHcC
Q 019734 279 LFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 279 ~~~~~~~~~A~~~~~~A~~~~ 299 (336)
+.+.|++++|......=.+.+
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCC
Confidence 677888888888777765544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.4e-05 Score=69.11 Aligned_cols=88 Identities=18% Similarity=0.246 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHH
Q 019734 119 KNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQ 190 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~k 190 (336)
+++.+|+..|.+|+++. ++.-+.+.+-+|.+.|.++.|++-.+.|+.. ....+|..||.+|+. ++|++.|+|
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence 56666666666666652 4555555666666666666666666665544 345566666666655 566666666
Q ss_pred HHHc--CCHHHHHHHHHH
Q 019734 191 ASIA--GHVRAQYQLALC 206 (336)
Q Consensus 191 a~~~--~~~~a~~~lg~~ 206 (336)
|++. .+....-+|..+
T Consensus 175 aLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 175 ALELDPDNESYKSNLKIA 192 (304)
T ss_pred hhccCCCcHHHHHHHHHH
Confidence 6554 244444444443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00017 Score=63.97 Aligned_cols=222 Identities=14% Similarity=0.049 Sum_probs=145.5
Q ss_pred ChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHH-HHHHHHhcCCCCcCCHHHHHHH----HHHHHHcCC--
Q 019734 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLL-RWGKRFKHGRGVRKNLDKALDS----FLKGAARGS-- 136 (336)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~-~lg~~~~~g~g~~~~~~~A~~~----~~~A~~~~~-- 136 (336)
.++..+..+..++...++.+++....+-+....+ .+.-+ .||-.-..+ -..+.+++++.+ ..-+.+..+
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~---~~~Rf~~lG~l~~a~-s~~g~y~~mL~~a~sqi~~a~~~~ds~ 80 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSD---LMGRFRVLGCLVTAH-SEMGRYKEMLKFAVSQIDTARELEDSD 80 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHH---HHHHHHHhccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678888899999999998555554544332 22221 122211111 001233333322 222222222
Q ss_pred --HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C------CHHHHHHHHHHHHH----HHHHHHHHHHHHc----CCH--
Q 019734 137 --TLAMVDAGLMYWEMDKKEAAISLYRQAAVL-G------DPAGQFNLGISYLQ----EEAVKLLYQASIA----GHV-- 197 (336)
Q Consensus 137 --~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~------~~~a~~~Lg~~~~~----~~A~~~~~ka~~~----~~~-- 197 (336)
-+++.+|++-+...-++.+++.+-+-.+.. | --.+..-+|+++.. ++++++|++|... +++
T Consensus 81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L 160 (518)
T KOG1941|consen 81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAML 160 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee
Confidence 367888888888888888888887766643 1 12455667777776 9999999999763 332
Q ss_pred --HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC------CCH------HHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 019734 198 --RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG------GYV------RAMYNTSLCYSFGEGLPLSHRQARKWMKRA 263 (336)
Q Consensus 198 --~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~------~~~------~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a 263 (336)
..+.-||.+|.. .+|+++|..+..+|++. ++. .+.+.++..+.. .| ..-.|.++-+.|
T Consensus 161 Elqvcv~Lgslf~~----l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~-~G---~LgdA~e~C~Ea 232 (518)
T KOG1941|consen 161 ELQVCVSLGSLFAQ----LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRL-LG---RLGDAMECCEEA 232 (518)
T ss_pred eeehhhhHHHHHHH----HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHH-hc---ccccHHHHHHHH
Confidence 467788888887 89999999999999653 343 456677777743 33 566666666666
Q ss_pred HH----cCCHH----HHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 264 AD----CGHGK----AQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 264 ~~----~~~~~----a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
.+ .|+-. ...-+|.+|.+.||.+.|+.-|+.|..
T Consensus 233 ~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 233 MKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 44 46643 347899999999999999999999975
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.25 E-value=6e-05 Score=59.90 Aligned_cols=116 Identities=17% Similarity=-0.006 Sum_probs=86.1
Q ss_pred cCCHHHHHHHHHHHHHc--CC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 019734 118 RKNLDKALDSFLKGAAR--GS---TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLLYQAS 192 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~A~~~~~ka~ 192 (336)
.++...+...+++.+.. +. ..+.+.+|.+++..|++++|+..|+++++......+.
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~------------------- 84 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK------------------- 84 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH-------------------
Confidence 36777887778877765 23 4677889999999999999999999988764111111
Q ss_pred HcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019734 193 IAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 264 (336)
Q Consensus 193 ~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~ 264 (336)
+.+.+.|+.++.. .+++++|+..++..... -.+.+...+|.+|... ++.++|+..|++|+
T Consensus 85 ----~~a~l~LA~~~~~----~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~----g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 85 ----PLARLRLARILLQ----QGQYDEALATLQQIPDEAFKALAAELLGDIYLAQ----GDYDEARAAYQKAL 145 (145)
T ss_pred ----HHHHHHHHHHHHH----cCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHC----CCHHHHHHHHHHhC
Confidence 2345567777777 78999999999775332 3567788999999763 39999999999874
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=7e-06 Score=58.66 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=61.1
Q ss_pred ccCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHhhccCCHHH
Q 019734 214 DFNLQEAARWYLRAAEGG----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD--CGHGKAQLEHGLGLFTEGEMMK 287 (336)
Q Consensus 214 ~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~~~~~ 287 (336)
.++++.|+.+|+++++.. +...++.+|.||.... ++++|+.++++ .. ..+....+.+|.++...|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~----~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG----KYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT----HHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC----CHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 478999999999997543 3456777899998744 99999999988 33 3556778888999999999999
Q ss_pred HHHHHHHH
Q 019734 288 AVVYLELA 295 (336)
Q Consensus 288 A~~~~~~A 295 (336)
|+..|++|
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999875
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.2e-05 Score=72.21 Aligned_cols=143 Identities=16% Similarity=-0.002 Sum_probs=80.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 019734 96 RPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQF 173 (336)
Q Consensus 96 ~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~ 173 (336)
+....+-.+|..|.-|.. .+..+++.+|+.+|++|++. +++.++-.++.+|.....+.. ..+.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~-~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~------------~~~~-- 398 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLN-SGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQP------------LDEK-- 398 (517)
T ss_pred CCCHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCC------------ccHH--
Confidence 333455566666766655 23355677888888888876 466666666665533211000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCC
Q 019734 174 NLGISYLQEEAVKLLYQASI----AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSFGEG 248 (336)
Q Consensus 174 ~Lg~~~~~~~A~~~~~ka~~----~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~g 248 (336)
.+ ..+....+++.. ..++.++..+|..... .+++++|...|++|++.. +..++..+|.++..
T Consensus 399 ~l------~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~----~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~--- 465 (517)
T PRK10153 399 QL------AALSTELDNIVALPELNVLPRIYEILAVQALV----KGKTDEAYQAINKAIDLEMSWLNYVLLGKVYEL--- 465 (517)
T ss_pred HH------HHHHHHHHHhhhcccCcCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---
Confidence 00 122222333322 1345556666666554 567777777777776542 46667777777754
Q ss_pred CcccHHHHHHHHHHHHHcC
Q 019734 249 LPLSHRQARKWMKRAADCG 267 (336)
Q Consensus 249 ~~~~~~~A~~~~~~a~~~~ 267 (336)
.++.++|+.+|++|+..+
T Consensus 466 -~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 466 -KGDNRLAADAYSTAFNLR 483 (517)
T ss_pred -cCCHHHHHHHHHHHHhcC
Confidence 227777777777777653
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.2e-05 Score=65.89 Aligned_cols=106 Identities=21% Similarity=0.202 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH-------HHHHHHHH
Q 019734 121 LDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ-------EEAVKLLY 189 (336)
Q Consensus 121 ~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~-------~~A~~~~~ 189 (336)
++.-+.-++.-+.. +|.+.|..||.+|...|++..|...|.+|+.. ++++.+..+|.++.. .++...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 45555555555544 67888888888888888888888888888765 678888888887776 77777777
Q ss_pred HHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC
Q 019734 190 QASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 230 (336)
Q Consensus 190 ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~ 230 (336)
+++.. .+..+.+.||..+.+ .+|+.+|+..++..++.
T Consensus 218 ~al~~D~~~iral~lLA~~afe----~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFE----QGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhc
Confidence 77665 466777777777776 67777777777776554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0005 Score=59.56 Aligned_cols=174 Identities=11% Similarity=-0.033 Sum_probs=121.7
Q ss_pred ChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-----CCH
Q 019734 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLRE-AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GST 137 (336)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-----~~~ 137 (336)
.+......+...+..|++.+|+..+..+....|..+. ..+.+.||.+|.. .+++++|+.+|++.++. ..+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~----~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCcCCCchH
Confidence 3455678888889999999999999999998876432 3456889999998 68999999999999986 246
Q ss_pred HHHHHHHHHHhcCC---------------C---HHHHHHHHHHHHHc--CC---HHHHHHHHHHHHHHHHHHHHHHHHHc
Q 019734 138 LAMVDAGLMYWEMD---------------K---KEAAISLYRQAAVL--GD---PAGQFNLGISYLQEEAVKLLYQASIA 194 (336)
Q Consensus 138 ~a~~~lg~~~~~~~---------------~---~~~A~~~~~~a~~~--~~---~~a~~~Lg~~~~~~~A~~~~~ka~~~ 194 (336)
.+++.+|.++...+ | ..+|+..|++.++. +. ++|...|..+..
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~-------------- 172 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKD-------------- 172 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH--------------
Confidence 78899998753332 2 24566777777765 22 233332222211
Q ss_pred CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 019734 195 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRA 263 (336)
Q Consensus 195 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a 263 (336)
....-.+.+|..|.. .+++.-|+.-++..++. ...++++.+...|... | ..++|..+....
T Consensus 173 ~la~~e~~ia~~Y~~----~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~l-g---~~~~a~~~~~~l 238 (243)
T PRK10866 173 RLAKYELSVAEYYTK----RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQL-Q---LNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHH----cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc-C---ChHHHHHHHHHH
Confidence 123334567888887 78888999988888764 3578888888888542 2 666776665443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.6e-05 Score=58.71 Aligned_cols=94 Identities=23% Similarity=0.208 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--C--
Q 019734 197 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY-----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--G-- 267 (336)
Q Consensus 197 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~-- 267 (336)
+.+.|++|.++.. .|+.++|+.+|++++..|- ..++..+|..|.. .| ++++|+.+++.++.. +
T Consensus 1 ~~~~~~~A~a~d~----~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG---~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 1 PRALYELAWAHDS----LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LG---RYDEALALLEEALEEFPDDE 72 (120)
T ss_pred CchHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHHCCCcc
Confidence 3578889999888 8999999999999988652 4578889999864 33 999999999999875 3
Q ss_pred -CHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 268 -HGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 268 -~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
+......++.++...|+.++|+.++-.++..
T Consensus 73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 73 LNAALRVFLALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3455677888899999999999999888763
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00019 Score=60.00 Aligned_cols=194 Identities=16% Similarity=0.154 Sum_probs=123.5
Q ss_pred cCCHHHHHHHHHHHHHc-----C---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHHH
Q 019734 118 RKNLDKALDSFLKGAAR-----G---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ---EEAVK 186 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~-----~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~---~~A~~ 186 (336)
...+++|.++|.+|+.. + -..++...+.++...|+..+| ...+..-+.+|.. ++|+.
T Consensus 27 ~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDa------------at~YveA~~cykk~~~~eAv~ 94 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDA------------ATTYVEAANCYKKVDPEEAVN 94 (288)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhH------------HHHHHHHHHHhhccChHHHHH
Confidence 35899999999998753 0 112333333333333333333 3344455667766 99999
Q ss_pred HHHHHHHc----C-CH---HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--C-C-----HHHHHHHHHHHHcCCCCc
Q 019734 187 LLYQASIA----G-HV---RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--G-Y-----VRAMYNTSLCYSFGEGLP 250 (336)
Q Consensus 187 ~~~ka~~~----~-~~---~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~-~-----~~a~~~lg~~~~~~~g~~ 250 (336)
+++++++. | .. .-...+|.+|+.. ..|+++|+.+|+.|++- + . ...+...+..-.. -
T Consensus 95 cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd---l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~----l 167 (288)
T KOG1586|consen 95 CLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD---LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ----L 167 (288)
T ss_pred HHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh---HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH----H
Confidence 99999874 3 22 2345788999873 58999999999999762 1 1 1223333332221 2
Q ss_pred ccHHHHHHHHHHHHHc--CCH-------HHHHHHHHHhhccCCHHHHHHHHHHHHHcCc----HHHHHHHHHHHhhcChh
Q 019734 251 LSHRQARKWMKRAADC--GHG-------KAQLEHGLGLFTEGEMMKAVVYLELATRAGE----TAADHVKNVILQQLSAT 317 (336)
Q Consensus 251 ~~~~~A~~~~~~a~~~--~~~-------~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~----~~a~~~~~~~~~~~~~~ 317 (336)
..+.+|+..|++.+.. +++ +-.+.-|.|+....|.-.+...+++-.+..+ ..-+..+..+...+...
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~ 247 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQ 247 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhh
Confidence 2899999999988752 332 2236778888888999888888888888754 34455666666666666
Q ss_pred cHHHHHHHHHHhh
Q 019734 318 SRDRAMLVVDSWR 330 (336)
Q Consensus 318 ~~~~a~~~~~~~~ 330 (336)
+.+.--+.++++-
T Consensus 248 d~e~fte~vkefD 260 (288)
T KOG1586|consen 248 DIEKFTEVVKEFD 260 (288)
T ss_pred hHHHHHHHHHhhh
Confidence 6665555555543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00022 Score=65.82 Aligned_cols=150 Identities=10% Similarity=0.031 Sum_probs=114.0
Q ss_pred HHHHHHHHH-------HHHHHHHHHHH---Hc--CCHHHHHHHHHHHhc----CC-CCccCHHHHHHHHHHHHHC--CCH
Q 019734 173 FNLGISYLQ-------EEAVKLLYQAS---IA--GHVRAQYQLALCLHR----GR-GVDFNLQEAARWYLRAAEG--GYV 233 (336)
Q Consensus 173 ~~Lg~~~~~-------~~A~~~~~ka~---~~--~~~~a~~~lg~~~~~----g~-g~~~~~~~A~~~~~~a~~~--~~~ 233 (336)
+..|..... +.|+.+|.+|+ +. +++.++..++.|+.. |+ ....+..+|...-++|++. .|+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 556666544 88899999998 43 578888888888764 44 2467888999999999765 689
Q ss_pred HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHH-HHHHHHHH
Q 019734 234 RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA-ADHVKNVI 310 (336)
Q Consensus 234 ~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~-a~~~~~~~ 310 (336)
.++..+|.++.. ..+++.|..+|++|... +.+.+++..|++..-.|+.++|..+.++|++..+-. +...+...
T Consensus 339 ~a~~~~g~~~~~----~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~ 414 (458)
T PRK11906 339 KILAIMGLITGL----SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKEC 414 (458)
T ss_pred HHHHHHHHHHHh----hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence 999999997754 23799999999999886 568888999999999999999999999999987654 44444444
Q ss_pred HhhcChhcHHHHHHHH
Q 019734 311 LQQLSATSRDRAMLVV 326 (336)
Q Consensus 311 ~~~~~~~~~~~a~~~~ 326 (336)
....-+...+.+..+.
T Consensus 415 ~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 415 VDMYVPNPLKNNIKLY 430 (458)
T ss_pred HHHHcCCchhhhHHHH
Confidence 4333344455555443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=5e-05 Score=65.75 Aligned_cols=97 Identities=22% Similarity=0.107 Sum_probs=59.0
Q ss_pred ccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhccCCHHHHH
Q 019734 214 DFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAV 289 (336)
Q Consensus 214 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~~~~~A~ 289 (336)
.++|.+|+..|.+|++. .++.-+.+-+.+|.+.. .++.|++-.+.|+..++ ..++..||.+|+.+|++++|+
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg----~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG----EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc----chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 46677777777776554 34555556666665432 66677777777766533 556667777777777777777
Q ss_pred HHHHHHHHcC--cHHHHHHHHHHHhhc
Q 019734 290 VYLELATRAG--ETAADHVKNVILQQL 314 (336)
Q Consensus 290 ~~~~~A~~~~--~~~a~~~~~~~~~~~ 314 (336)
..|++|++.+ ++.....+......+
T Consensus 170 ~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 7777776654 334444444444444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00043 Score=58.32 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--C---CH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--G---STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--G---DP 169 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~---~~ 169 (336)
.+..+|..|..+.. .+++.+|+..|++.... + -+.+.+.+|..++..|++++|+..|++.+.. + .+
T Consensus 4 ~~~~lY~~a~~~~~----~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 4 TAEALYQKALEALQ----QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp -HHHHHHHHHHHHH----CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 57788889998888 58999999999998875 2 3688999999999999999999999998865 2 35
Q ss_pred HHHHHHHHHHHH
Q 019734 170 AGQFNLGISYLQ 181 (336)
Q Consensus 170 ~a~~~Lg~~~~~ 181 (336)
.+++.+|.++..
T Consensus 80 ~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 80 YALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 688888887764
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00011 Score=70.42 Aligned_cols=132 Identities=15% Similarity=-0.029 Sum_probs=95.1
Q ss_pred CCHHHH--HHHHHHHHH-------HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCc----cCHHHHHHHHHHHHH--
Q 019734 167 GDPAGQ--FNLGISYLQ-------EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVD----FNLQEAARWYLRAAE-- 229 (336)
Q Consensus 167 ~~~~a~--~~Lg~~~~~-------~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~----~~~~~A~~~~~~a~~-- 229 (336)
.+++|+ +..|.-|.. .+|+.+|++|++. +++.++-.++.+|....+.. .+...+....+++..
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~ 414 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP 414 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence 344443 555555544 7889999999765 67788887777765322211 234556666666543
Q ss_pred --CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHH
Q 019734 230 --GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 302 (336)
Q Consensus 230 --~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 302 (336)
..++.++..+|..+.. .+++++|...+++|+..+ +..++..+|.++...|++++|..+|++|++.++..
T Consensus 415 ~~~~~~~~~~ala~~~~~----~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 415 ELNVLPRIYEILAVQALV----KGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred cCcCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 2456778888888754 339999999999999864 46778999999999999999999999999986543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.6e-06 Score=57.24 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS-----TLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~~-----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (336)
+.++..+|.+|.. .+++++|+.+|++|++. ++ ..++.++|.++...|++++|+.+|+++++
T Consensus 5 a~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRE----LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5678899999998 68999999999999864 31 45778999999999999999999999875
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.9e-05 Score=65.12 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=91.7
Q ss_pred HcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CC
Q 019734 193 IAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GH 268 (336)
Q Consensus 193 ~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~ 268 (336)
+.++.+.|..||.+|.. .+++..|...|.+|.. +++++.+..+|.++....| .++..++...+++++.. .+
T Consensus 152 nP~d~egW~~Lg~~ym~----~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~-~~~ta~a~~ll~~al~~D~~~ 226 (287)
T COG4235 152 NPGDAEGWDLLGRAYMA----LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG-QQMTAKARALLRQALALDPAN 226 (287)
T ss_pred CCCCchhHHHHHHHHHH----hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CcccHHHHHHHHHHHhcCCcc
Confidence 35788899999999988 8999999999999965 5789999999998876654 67899999999999986 56
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHH
Q 019734 269 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 303 (336)
Q Consensus 269 ~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a 303 (336)
..+.+.||..+++.|++.+|...|+.-++..+++.
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 88889999999999999999999999998765543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=54.34 Aligned_cols=60 Identities=17% Similarity=0.070 Sum_probs=44.7
Q ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH
Q 019734 238 NTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 301 (336)
Q Consensus 238 ~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~ 301 (336)
.+|..+... +++++|+..|++++.. +++.+++.+|.++...|++++|..+|++++...+.
T Consensus 2 ~~a~~~~~~----g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQ----GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHC----THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHc----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 456666542 3888888888888875 45777888888888888888888888888876543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.4e-05 Score=64.62 Aligned_cols=178 Identities=12% Similarity=-0.008 Sum_probs=128.0
Q ss_pred cCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHH--HHHHhcCCC
Q 019734 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDA--GLMYWEMDK 152 (336)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~l--g~~~~~~~~ 152 (336)
.+.+.++..++.+.....++.+. +-.++-.||.||.+ .+++..|..+|++...+....+.+.+ +.-+++.+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~--~rAgLSlLgyCYY~----~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPR--SRAGLSLLGYCYYR----LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 35667899999888888888776 66788889999999 68999999999999887665565544 556667788
Q ss_pred HHHHHHHHHHHHHcCC-HHHHH--HHHHHHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 019734 153 KEAAISLYRQAAVLGD-PAGQF--NLGISYLQ---EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 226 (336)
Q Consensus 153 ~~~A~~~~~~a~~~~~-~~a~~--~Lg~~~~~---~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~ 226 (336)
+..|+.......+... -+-.. .-+..|.. .-+....++....++++...+.|-+... .++++.|++-|+.
T Consensus 94 ~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyk----egqyEaAvqkFqa 169 (459)
T KOG4340|consen 94 YADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYK----EGQYEAAVQKFQA 169 (459)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeec----cccHHHHHHHHHH
Confidence 8888877666554311 11111 11122221 3344444444445778888999988877 7899999999999
Q ss_pred HHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019734 227 AAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 266 (336)
Q Consensus 227 a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~ 266 (336)
|.+- -.+-..++++.++... +++..|+++....++.
T Consensus 170 AlqvsGyqpllAYniALaHy~~----~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALAHYSS----RQYASALKHISEIIER 207 (459)
T ss_pred HHhhcCCCchhHHHHHHHHHhh----hhHHHHHHHHHHHHHh
Confidence 9765 3567778899998763 3899999998888774
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.5e-05 Score=59.83 Aligned_cols=90 Identities=17% Similarity=0.002 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFNLG 176 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg 176 (336)
-+..|..|.-+.+ .|++++|...|+-.+.. .+++-++.||.++...+++++|+..|..|.. .+||...|..|
T Consensus 37 le~iY~~Ay~~y~----~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 37 MDGLYAHAYEFYN----QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 3456666666666 57899999999887765 4778888888899888999999999888764 47788888888
Q ss_pred HHHHH----HHHHHHHHHHHHc
Q 019734 177 ISYLQ----EEAVKLLYQASIA 194 (336)
Q Consensus 177 ~~~~~----~~A~~~~~ka~~~ 194 (336)
.||+. +.|+.+|+.+++.
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHhC
Confidence 88877 7777777777764
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0016 Score=61.34 Aligned_cols=216 Identities=10% Similarity=0.020 Sum_probs=134.0
Q ss_pred HHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHH
Q 019734 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAG 144 (336)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg 144 (336)
++.+.....+..++++++|...+.+.+...|+ +.++.+.-=.+..+ ...+++|+...++--.. -+..-.+.-+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq----~~ky~~ALk~ikk~~~~~~~~~~~fEKA 86 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQ----LDKYEDALKLIKKNGALLVINSFFFEKA 86 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhh----hhHHHHHHHHHHhcchhhhcchhhHHHH
Confidence 57788888889999999999999999999887 55555543344433 35788888655543221 1111226888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHH
Q 019734 145 LMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQ 218 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~ 218 (336)
+|.++.+..++|+..++ .++..+......-|.+++. ++|+..|+..++.+ +.+........ ..+ ..
T Consensus 87 Yc~Yrlnk~Dealk~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~-a~~------a~ 158 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL-AVA------AA 158 (652)
T ss_pred HHHHHcccHHHHHHHHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHH------Hh
Confidence 89999999999999988 5666665555555666555 88888888887653 22222221111 110 00
Q ss_pred HHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-------CC----------HHHHHHHHHHh
Q 019734 219 EAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-------GH----------GKAQLEHGLGL 279 (336)
Q Consensus 219 ~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-------~~----------~~a~~~lg~~~ 279 (336)
....+.+... ..++-+.+||.+-++.. .| ++.+|++.+++|... ++ ......|+.++
T Consensus 159 l~~~~~q~v~~v~e~syel~yN~Ac~~i~-~g---ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 159 LQVQLLQSVPEVPEDSYELLYNTACILIE-NG---KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred hhHHHHHhccCCCcchHHHHHHHHHHHHh-cc---cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 0111222221 12355666777766643 23 788888888887321 11 12236777777
Q ss_pred hccCCHHHHHHHHHHHHHcC
Q 019734 280 FTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 280 ~~~~~~~~A~~~~~~A~~~~ 299 (336)
...|+.++|...|..-+...
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHhcchHHHHHHHHHHHHhc
Confidence 77888888888887777654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00015 Score=63.42 Aligned_cols=96 Identities=13% Similarity=0.087 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHH-hcCCCCccCHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc---
Q 019734 196 HVRAQYQLALCL-HRGRGVDFNLQEAARWYLRAAEG--GY---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--- 266 (336)
Q Consensus 196 ~~~a~~~lg~~~-~~g~g~~~~~~~A~~~~~~a~~~--~~---~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--- 266 (336)
.....|..+..+ .. .+++++|+..|++.+.. ++ +.+++.+|.+|.. .+++++|+..|++.+..
T Consensus 141 ~e~~~Y~~A~~l~~~----~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~----~g~~~~A~~~f~~vv~~yP~ 212 (263)
T PRK10803 141 DANTDYNAAIALVQD----KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN----KGKKDDAAYYFASVVKNYPK 212 (263)
T ss_pred CHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCC
Confidence 446667776654 33 47899999999999764 33 6899999999976 34999999999999963
Q ss_pred --CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 267 --GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 267 --~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
..+++++.+|.++...|++++|...|++.++..
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 247888999999999999999999999999864
|
|
| >smart00671 SEL1 Sel1-like repeats | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.3e-05 Score=47.11 Aligned_cols=36 Identities=36% Similarity=0.584 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS 136 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~ 136 (336)
+.+++.||.+|..|.|+++|..+|+.||++|++.++
T Consensus 1 ~~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g~ 36 (36)
T smart00671 1 AEAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELGN 36 (36)
T ss_pred CHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHccC
Confidence 368899999999999999999999999999998764
|
These represent a subfamily of TPR (tetratricopeptide repeat) sequences. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.001 Score=65.00 Aligned_cols=153 Identities=20% Similarity=0.126 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH----------------------cCCHHHHHHHHHHHHH----HHHHHHHHHH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAV----------------------LGDPAGQFNLGISYLQ----EEAVKLLYQA 191 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~----------------------~~~~~a~~~Lg~~~~~----~~A~~~~~ka 191 (336)
..+++.+.-+...+|.+.|+++|+++-. ..++..+.+-|..+.. +-|+.+|.+|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 3456666666667778888888877521 0223333333333332 5555555554
Q ss_pred H-----------------------HcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH----------CCCHH----
Q 019734 192 S-----------------------IAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE----------GGYVR---- 234 (336)
Q Consensus 192 ~-----------------------~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~----------~~~~~---- 234 (336)
- +.|+..|.|.||..|+. .++..+|+.+|.+|-. .+.-+
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn----~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN----DGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 2 24677788889998888 7888889888887621 11111
Q ss_pred --------HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--------------------------CCHHHHHHHHHHhh
Q 019734 235 --------AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--------------------------GHGKAQLEHGLGLF 280 (336)
Q Consensus 235 --------a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--------------------------~~~~a~~~lg~~~~ 280 (336)
-+...+..|....| +.++|...|.+|--. .++......+..+.
T Consensus 1015 lal~s~~~d~v~aArYyEe~g~---~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~ 1091 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEELGG---YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFE 1091 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHcch---hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 22333444443333 666777766665211 12444456666667
Q ss_pred ccCCHHHHHHHHHHHHH
Q 019734 281 TEGEMMKAVVYLELATR 297 (336)
Q Consensus 281 ~~~~~~~A~~~~~~A~~ 297 (336)
+..+|++|++++-++-+
T Consensus 1092 ~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1092 NNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 77788888887766543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0017 Score=54.74 Aligned_cols=167 Identities=16% Similarity=0.124 Sum_probs=98.5
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHH----HHHHHHHHHHHHc-----CCHHHH
Q 019734 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--G---DPAGQFNLGISYLQ----EEAVKLLYQASIA-----GHVRAQ 200 (336)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~Lg~~~~~----~~A~~~~~ka~~~-----~~~~a~ 200 (336)
..+..++..|..++..|++.+|+..|++.+.. + -+.+.+.+|.++.. ..|+..|++.++. ..+.++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 35778899999999999999999999999864 2 35777888888877 7777777777653 234577
Q ss_pred HHHHHHHhcCC-CC------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 019734 201 YQLALCLHRGR-GV------DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL 273 (336)
Q Consensus 201 ~~lg~~~~~g~-g~------~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~ 273 (336)
+.+|.++.... +. .....+|+..|+..++.-.. ..-..+|...+... ...-..-.+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~----------------S~y~~~A~~~l~~l-~~~la~~e~ 145 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN----------------SEYAEEAKKRLAEL-RNRLAEHEL 145 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT----------------STTHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC----------------chHHHHHHHHHHHH-HHHHHHHHH
Confidence 77777754311 11 12223334444433321000 00112222222211 111123347
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHc--Cc---HHHHHHHHHHHhhcChhc
Q 019734 274 EHGLGLFTEGEMMKAVVYLELATRA--GE---TAADHVKNVILQQLSATS 318 (336)
Q Consensus 274 ~lg~~~~~~~~~~~A~~~~~~A~~~--~~---~~a~~~~~~~~~~~~~~~ 318 (336)
.+|..|++.|.+..|+..++..++. +. +++...+......+...+
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 8899999999999999999999985 22 345556666666665544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.97 E-value=3e-05 Score=54.45 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC-----HHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 233 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH-----GKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 233 ~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~~-----~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
..++.++|.+|.. . +++++|+.+|+++++. ++ ..++.++|.+|...|++++|..+|+++++
T Consensus 5 a~~~~~la~~~~~-~---~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRE-L---GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-c---CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3456677777754 2 2777777777777652 22 34567888888888888888888888876
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.2e-05 Score=69.30 Aligned_cols=65 Identities=14% Similarity=0.025 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 019734 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTL---AMVDAGLMYWEMDKKEAAISLYRQAAVLG 167 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~---a~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 167 (336)
.++.+++++|.+|.. .+++++|+.+|++|++. ++++ +++++|.+|...|++++|+.+|++|++..
T Consensus 73 ~~a~a~~NLG~AL~~----lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 73 KTAEDAVNLGLSLFS----KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 477888888888877 57888888888888876 3443 48888888888888888888888888764
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00028 Score=60.66 Aligned_cols=100 Identities=11% Similarity=0.109 Sum_probs=86.8
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCC-CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-----CCHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPL-REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GSTLAMV 141 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-----~~~~a~~ 141 (336)
....+..++..|+|..|...++.+++.-|+. --++|+|-||.+++. .+|++.|...|..+++. --|++++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 6788889999999999999999999998763 357888889999998 68999999999999975 2579999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc--CCHHH
Q 019734 142 DAGLMYWEMDKKEAAISLYRQAAVL--GDPAG 171 (336)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a 171 (336)
.||.+....|+.++|...|++.++. +.+.+
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 9999999999999999999999876 54444
|
|
| >PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway [] | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.8e-05 Score=47.37 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=32.4
Q ss_pred HHHHHHHH--HHHhcCC-CCcCCHHHHHHHHHHHHHcCC
Q 019734 101 AMVLLRWG--KRFKHGR-GVRKNLDKALDSFLKGAARGS 136 (336)
Q Consensus 101 ~~a~~~lg--~~~~~g~-g~~~~~~~A~~~~~~A~~~~~ 136 (336)
+++++.|| .+|..|. |+++|.++|+.||++|++.||
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~ 39 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH 39 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence 57899999 8889999 899999999999999999875
|
Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00051 Score=59.56 Aligned_cols=172 Identities=14% Similarity=0.088 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH--HHHHH----HHHHHHHHH
Q 019734 119 KNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLG--ISYLQ----EEAVKLLYQ 190 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg--~~~~~----~~A~~~~~k 190 (336)
..+..|++++..-.+.. +-.++..||.+|+...++..|..+|.+....-...+.|.+- ..+.. ..|+.....
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 57888888887666553 45678899999999999999999999998776555555442 22222 555555444
Q ss_pred HHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-
Q 019734 191 ASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC- 266 (336)
Q Consensus 191 a~~~~---~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~- 266 (336)
..+.. ..-.+..-+..|. .+|+.-+....+.-...++++...+.|-+..+ +.+++.|++-|+.|.+-
T Consensus 104 ~~D~~~L~~~~lqLqaAIkYs-----e~Dl~g~rsLveQlp~en~Ad~~in~gCllyk----egqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 104 LLDNPALHSRVLQLQAAIKYS-----EGDLPGSRSLVEQLPSENEADGQINLGCLLYK----EGQYEAAVQKFQAALQVS 174 (459)
T ss_pred hcCCHHHHHHHHHHHHHHhcc-----cccCcchHHHHHhccCCCccchhccchheeec----cccHHHHHHHHHHHHhhc
Confidence 43321 1112233344444 46777777777776666888889999877654 33999999999999985
Q ss_pred CC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 267 GH-GKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 267 ~~-~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
|. +-..++++.+++..++++.|.++..+.++.|
T Consensus 175 GyqpllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 43 5566999999999999999999998887643
|
|
| >smart00671 SEL1 Sel1-like repeats | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.4e-05 Score=45.20 Aligned_cols=34 Identities=41% Similarity=0.589 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC
Q 019734 198 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 231 (336)
Q Consensus 198 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~ 231 (336)
.+++.||.+|..|.|+..|..+|+.||++|++.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 3455555555555555555555555555555443
|
These represent a subfamily of TPR (tetratricopeptide repeat) sequences. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.002 Score=57.25 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=59.8
Q ss_pred CCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCH
Q 019734 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKK 153 (336)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~ 153 (336)
+...++..|+.+..--.....+ .......-+|.|+++ .+|+++|..-|+.+.+.. +.+...+|+-+++..|.+
T Consensus 33 ls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fh----LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFH----LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHh----hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 4667788886444333222111 122344447999999 689999999999888764 567788999999999999
Q ss_pred HHHHHHHHHHH
Q 019734 154 EAAISLYRQAA 164 (336)
Q Consensus 154 ~~A~~~~~~a~ 164 (336)
.+|...-.++.
T Consensus 108 ~eA~~~~~ka~ 118 (557)
T KOG3785|consen 108 IEAKSIAEKAP 118 (557)
T ss_pred HHHHHHHhhCC
Confidence 99988776664
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0052 Score=51.12 Aligned_cols=186 Identities=15% Similarity=0.076 Sum_probs=117.0
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
.+..++..|..|.. .|-..-|.--|.+++.. .-+++.+.||..+...|+++.|.+.|....+. +.--+..|.
T Consensus 64 RA~l~fERGvlYDS----lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 64 RAQLLFERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred HHHHHHHhcchhhh----hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 55667777777766 35566667777777766 57889999999999999999999999998876 455667776
Q ss_pred HHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCC
Q 019734 176 GISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY--VRAMYNTSLCYSFGE 247 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~ 247 (336)
|..+.. ..|..-|.+--.. .+|- ..| .+|.... .-|+.+|...+..-.+..+ -..++-++..+ |.
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPf--R~L-WLYl~E~--k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL--gk 212 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPNDPF--RSL-WLYLNEQ--KLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL--GK 212 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCCChH--HHH-HHHHHHh--hCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH--hh
Confidence 666554 5555555554333 3331 111 1222111 5678888876654444433 23333333322 21
Q ss_pred CCcccHHHHHHHHHHHHHc------CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 248 GLPLSHRQARKWMKRAADC------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 248 g~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
- ..+...+-...-... --.+.++.||..|...|+.++|...|+.|+...
T Consensus 213 i---S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 213 I---SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred c---cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1 233333322222221 125678999999999999999999999999865
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0014 Score=58.30 Aligned_cols=188 Identities=20% Similarity=0.160 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CCH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHc------C
Q 019734 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GST----LAMVDAGLMYWEMDKKEAAISLYRQAAVL------G 167 (336)
Q Consensus 102 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~~~----~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------~ 167 (336)
.++..+|.++.- ..-+++++++|++|.+. +++ ..+..||.++...+|+++|..+..+|++. +
T Consensus 123 q~~l~~~~Ahlg----ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~ 198 (518)
T KOG1941|consen 123 QVSLSMGNAHLG----LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK 198 (518)
T ss_pred hhhhhHHHHhhh----HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC
Confidence 334445554443 34566777777777654 222 35666777777777777777777776543 3
Q ss_pred CHHHH------HHHHHHHHH----HHHHHHHHHH----HHcCC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH-
Q 019734 168 DPAGQ------FNLGISYLQ----EEAVKLLYQA----SIAGH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAA- 228 (336)
Q Consensus 168 ~~~a~------~~Lg~~~~~----~~A~~~~~ka----~~~~~----~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~- 228 (336)
+..+. +.++..+.. ..|.++.+.| +..|+ +..+.-+|++|.. .+|.+.|..-|+.|-
T Consensus 199 d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~----~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 199 DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS----RGDLERAFRRYEQAMG 274 (518)
T ss_pred chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh----cccHhHHHHHHHHHHH
Confidence 43333 233333322 4455555544 33443 4556778888887 788888888888773
Q ss_pred ---HC----CCHHHHHHHHHHHHcCCCC-cccHHHHHHHHHHHHHc----CCH----HHHHHHHHHhhccCCHHHHHHHH
Q 019734 229 ---EG----GYVRAMYNTSLCYSFGEGL-PLSHRQARKWMKRAADC----GHG----KAQLEHGLGLFTEGEMMKAVVYL 292 (336)
Q Consensus 229 ---~~----~~~~a~~~lg~~~~~~~g~-~~~~~~A~~~~~~a~~~----~~~----~a~~~lg~~~~~~~~~~~A~~~~ 292 (336)
.. +...++-..+.++...+-. ..--=.|+++-++.++. |.. ..+..|+.+|..+|.-++=...+
T Consensus 275 ~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~ 354 (518)
T KOG1941|consen 275 TMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHV 354 (518)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 22 3456666777776543210 00113477777777663 332 23467788888888766666666
Q ss_pred HHHHH
Q 019734 293 ELATR 297 (336)
Q Consensus 293 ~~A~~ 297 (336)
.+|-+
T Consensus 355 ~ra~~ 359 (518)
T KOG1941|consen 355 VRAHE 359 (518)
T ss_pred HHHHH
Confidence 66543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00058 Score=60.72 Aligned_cols=153 Identities=14% Similarity=0.048 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCC-C
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQASIAGHVRAQYQLALCLHRGR-G 212 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~-g 212 (336)
......|.++...|++++|+..+.+. ++.++....-.+|+. +.|.+.++...+.++-....+|+..+..-. |
T Consensus 103 ~~~~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 103 IVQLLAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG 179 (290)
T ss_dssp HHHHHHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC
Confidence 33444455555556666666655543 445555444444444 555555555544443333444444332100 1
Q ss_pred CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCH-HH
Q 019734 213 VDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEM-MK 287 (336)
Q Consensus 213 ~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~-~~ 287 (336)
...+.+|...|+...+. ..+...+.++.++... +++++|...++.++.. ++++...|+..+....|+. +.
T Consensus 180 -~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~----~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 180 -GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL----GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp -TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC----T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHH
T ss_pred -chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhH
Confidence 24677788888776654 3456667777777653 3888888888888764 5577778888877777777 44
Q ss_pred HHHHHHHHHHc
Q 019734 288 AVVYLELATRA 298 (336)
Q Consensus 288 A~~~~~~A~~~ 298 (336)
+.+++.+....
T Consensus 255 ~~~~l~qL~~~ 265 (290)
T PF04733_consen 255 AERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHCHHH
T ss_pred HHHHHHHHHHh
Confidence 55555554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=6.4e-05 Score=51.09 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=44.8
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGI 177 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~ 177 (336)
.+++++|+.+|++++.. ++.++++.+|.+|...|++++|...+.+++.. +++..+..++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 36888888888888876 57888888888888888888888888888755 33555555443
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00026 Score=65.23 Aligned_cols=66 Identities=17% Similarity=-0.028 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHH---HHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 230 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGK---AQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 230 ~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~---a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
++++.+++++|..|.... ++++|+.+|+++++. ++.. +++|+|.+|..+|++++|+.+|++|++.+
T Consensus 72 P~~a~a~~NLG~AL~~lG----ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKG----RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 445566666666654322 566666666666554 2222 25666666666666666666666666543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0045 Score=58.48 Aligned_cols=204 Identities=15% Similarity=0.039 Sum_probs=135.1
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH----HHHHHHHH
Q 019734 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAA--VLGDPAGQFNLGISYLQ----EEAVKLLY 189 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~~~~----~~A~~~~~ 189 (336)
.+++++|+.--.+.+.. +++.+...--.++...+.|++|+...++-- ..++. -.|.-+.|.+. ++|+..++
T Consensus 25 ~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred chHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHcccHHHHHHHHh
Confidence 67899999998888877 577888877777888899999997666532 22222 22667777777 99999998
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH--
Q 019734 190 QASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV--RAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD-- 265 (336)
Q Consensus 190 ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~-- 265 (336)
.++..+......-|.+++. .++|++|...|+..+..+.. +........- .+ -....++.+....
T Consensus 104 -~~~~~~~~ll~L~AQvlYr----l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a-~~------a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 104 -GLDRLDDKLLELRAQVLYR----LERYDEALDIYQHLAKNNSDDQDEERRANLLA-VA------AALQVQLLQSVPEVP 171 (652)
T ss_pred -cccccchHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH-HH------HhhhHHHHHhccCCC
Confidence 5555666677777777777 78999999999999766433 2222222111 10 0111123333322
Q ss_pred cCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc-------C---cHHHHH-----HHHHHHhhcChhcHHHHHHHHHHhh
Q 019734 266 CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA-------G---ETAADH-----VKNVILQQLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 266 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~-------~---~~~a~~-----~~~~~~~~~~~~~~~~a~~~~~~~~ 330 (336)
.+.-+-+||.+.++...|++.+|++.+++|.+. + .++-.. .+...+...-.++.++|..+...++
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 245567799999999999999999999999432 1 122222 2233344445677888888776666
Q ss_pred cCCC
Q 019734 331 AMPS 334 (336)
Q Consensus 331 ~~~~ 334 (336)
+.+|
T Consensus 252 ~~~~ 255 (652)
T KOG2376|consen 252 KRNP 255 (652)
T ss_pred HhcC
Confidence 5544
|
|
| >PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway [] | Back alignment and domain information |
|---|
Probab=97.79 E-value=4e-05 Score=45.84 Aligned_cols=34 Identities=41% Similarity=0.733 Sum_probs=19.2
Q ss_pred HHHHHHH--HHHhcCC-CCccCHHHHHHHHHHHHHCC
Q 019734 198 RAQYQLA--LCLHRGR-GVDFNLQEAARWYLRAAEGG 231 (336)
Q Consensus 198 ~a~~~lg--~~~~~g~-g~~~~~~~A~~~~~~a~~~~ 231 (336)
+|++.|| .+|..|. |+.+|.++|+.||++|++.|
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 4555555 5555555 45555566666665555544
|
Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.004 Score=60.99 Aligned_cols=144 Identities=17% Similarity=0.074 Sum_probs=89.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHH----------------------cCCHH
Q 019734 145 LMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQASI----------------------AGHVR 198 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~----------------------~~~~~ 198 (336)
.+|...|..++|++.-+.--...--..+++.+.-+.. +.|++||+|+-. ..++.
T Consensus 834 KlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~ 913 (1416)
T KOG3617|consen 834 KLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDES 913 (1416)
T ss_pred HHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchH
Confidence 3444445555554432211111123345555555544 889999998621 13455
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHHHH-----------------------HCCCHHHHHHHHHHHHcCCCCcccHHH
Q 019734 199 AQYQLALCLHRGRGVDFNLQEAARWYLRAA-----------------------EGGYVRAMYNTSLCYSFGEGLPLSHRQ 255 (336)
Q Consensus 199 a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~-----------------------~~~~~~a~~~lg~~~~~~~g~~~~~~~ 255 (336)
-+..+|..++. .|+.+.|+.+|.+|- +.|+-.|+|.||..|... +++.+
T Consensus 914 L~~WWgqYlES----~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~----g~v~~ 985 (1416)
T KOG3617|consen 914 LYSWWGQYLES----VGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEND----GDVVK 985 (1416)
T ss_pred HHHHHHHHHhc----ccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhh----HHHHH
Confidence 56778888877 789999998888542 347889999999999653 38999
Q ss_pred HHHHHHHHHHc----------CCHHHHHHH------------HHHhhccC-CHHHHHHHHHHHH
Q 019734 256 ARKWMKRAADC----------GHGKAQLEH------------GLGLFTEG-EMMKAVVYLELAT 296 (336)
Q Consensus 256 A~~~~~~a~~~----------~~~~a~~~l------------g~~~~~~~-~~~~A~~~~~~A~ 296 (336)
|+.+|.+|-.- +..+-..|| +..|.+.| +.++|+..|.+|-
T Consensus 986 Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAG 1049 (1416)
T KOG3617|consen 986 AVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAG 1049 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhc
Confidence 99999998541 212222222 33344555 8888888888763
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0048 Score=63.57 Aligned_cols=171 Identities=13% Similarity=0.002 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH----HHHHHHHHHHHHc-C-CHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 019734 152 KKEAAISLYRQAAVLGD-PAGQFNLGISYLQ----EEAVKLLYQASIA-G-HVRAQYQLALCLHRGRGVDFNLQEAARWY 224 (336)
Q Consensus 152 ~~~~A~~~~~~a~~~~~-~~a~~~Lg~~~~~----~~A~~~~~ka~~~-~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~ 224 (336)
.-+.-.+.|.+|.+--+ ...+..|..+|.. ++|.++|+.-++. + ....|..+|..+.. ..+-+.|...+
T Consensus 1512 ~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~----~ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1512 TEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR----QNEAEAARELL 1587 (1710)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc----ccHHHHHHHHH
Confidence 33344444444444422 2333444444443 4444444444433 1 33444444444443 23334444444
Q ss_pred HHHHHC----CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 225 LRAAEG----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 225 ~~a~~~----~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
++|+.- .+.+-.-..+.+-++ .| |.+.+...|+-.+... ..+.|.-+...-...|+.+.....|+++++.
T Consensus 1588 ~rAL~~lPk~eHv~~IskfAqLEFk-~G---DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1588 KRALKSLPKQEHVEFISKFAQLEFK-YG---DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHhhcchhhhHHHHHHHHHHHhh-cC---CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 444321 123333333333221 11 4444444444433321 2233333333333455666666666666654
Q ss_pred C--cHHHHHHHHHHHh----hcChhcHHHHHHHHHHhh
Q 019734 299 G--ETAADHVKNVILQ----QLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 299 ~--~~~a~~~~~~~~~----~~~~~~~~~a~~~~~~~~ 330 (336)
+ ...+.......+. +......+..+..+.++.
T Consensus 1664 ~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv 1701 (1710)
T KOG1070|consen 1664 KLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYV 1701 (1710)
T ss_pred CCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH
Confidence 3 2233333332222 223344455555555544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00056 Score=52.07 Aligned_cols=92 Identities=20% Similarity=0.165 Sum_probs=55.2
Q ss_pred cCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHh
Q 019734 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS------TLAMVDAGLMYW 148 (336)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~------~~a~~~lg~~~~ 148 (336)
.-..|++..|++.+.+.+.-.|. ++.++.+.+..+.. .++.++|+.-+.+|+++.. -.++.+.|.+|.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~--raSayNNRAQa~RL----q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE--RASAYNNRAQALRL----QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc--chHhhccHHHHHHH----cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 34556666666666666666655 56666666666555 4566666666666666521 135556666666
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHH
Q 019734 149 EMDKKEAAISLYRQAAVLGDPAGQ 172 (336)
Q Consensus 149 ~~~~~~~A~~~~~~a~~~~~~~a~ 172 (336)
..|+-+.|+.-|..|++.|.+-+-
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCHHHH
Confidence 666666666666666666555443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0013 Score=60.75 Aligned_cols=112 Identities=15% Similarity=0.124 Sum_probs=81.3
Q ss_pred hHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCC--------CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--
Q 019734 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLR--------EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-- 134 (336)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-- 134 (336)
+...+-+....|..|+++.|..+...--- ....| .-.++.+||-|+++ .+.+.-+..+|.+|++.
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni-~~~~g~~~T~q~~~cif~NNlGcIh~~----~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNI-HKEAGGTITPQLSSCIFNNNLGCIHYQ----LGCYQASSVLFLKALRNSC 314 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhccc-ccccCccccchhhhheeecCcceEeee----hhhHHHHHHHHHHHHHHHH
Confidence 34555666667888999999643322110 11111 33355678888777 57888999999999851
Q ss_pred -----C-------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 019734 135 -----G-------------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ 181 (336)
Q Consensus 135 -----~-------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 181 (336)
| .-+..|++|..|...|++-.|.++|.+++.. .+|..|..|+.+..-
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 2 2367899999999999999999999999876 789999999888765
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.017 Score=48.93 Aligned_cols=18 Identities=6% Similarity=0.021 Sum_probs=9.2
Q ss_pred hhccCCHHHHHHHHHHHH
Q 019734 279 LFTEGEMMKAVVYLELAT 296 (336)
Q Consensus 279 ~~~~~~~~~A~~~~~~A~ 296 (336)
|.-..|+..|..+|+.-.
T Consensus 200 ~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 200 YLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred HhhHHHHHHHHHHhcchh
Confidence 333445555555555543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0012 Score=59.65 Aligned_cols=89 Identities=12% Similarity=0.095 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHR 209 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~ 209 (336)
.++.+|+.+|...+++.+|+.+..+++.. +|+.|+|.-|.++.. +.|+..|+++++. ++..+...|..|-..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34567777777777777777777777644 677777777777776 7777777777654 566666666666554
Q ss_pred CCCCccCHHHHHHHHHHHHH
Q 019734 210 GRGVDFNLQEAARWYLRAAE 229 (336)
Q Consensus 210 g~g~~~~~~~A~~~~~~a~~ 229 (336)
- .....+..+.|.+...
T Consensus 338 ~---~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 I---REYEEKEKKMYANMFA 354 (397)
T ss_pred H---HHHHHHHHHHHHHHhh
Confidence 1 1223344566666543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.022 Score=47.97 Aligned_cols=139 Identities=20% Similarity=0.214 Sum_probs=89.9
Q ss_pred CCHHHHHHHHHHHHHc----C---C-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHH-
Q 019734 119 KNLDKALDSFLKGAAR----G---S-TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQ- 181 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~----~---~-~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~- 181 (336)
+++..|-..|.+|+.. + + ...+...+.+| +..++++|+.++.++++. |. +.-+..||.+|..
T Consensus 48 K~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd 126 (288)
T KOG1586|consen 48 KNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD 126 (288)
T ss_pred HhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh
Confidence 5777777777777753 2 2 33445566666 456999999999999975 32 2334678888877
Q ss_pred ----HHHHHHHHHHHHc---CCH-----HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCH-------HHHHHHH
Q 019734 182 ----EEAVKLLYQASIA---GHV-----RAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYV-------RAMYNTS 240 (336)
Q Consensus 182 ----~~A~~~~~ka~~~---~~~-----~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~-------~a~~~lg 240 (336)
++|+.+|++|.+- ... ..+...+..-.. .++|.+|+..|++.+. .++. .-.+.-|
T Consensus 127 l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~----leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAg 202 (288)
T KOG1586|consen 127 LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ----LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAG 202 (288)
T ss_pred HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHH
Confidence 9999999999873 222 223444444334 7899999999998754 2433 2345667
Q ss_pred HHHHcCCCCcccHHHHHHHHHHHHHc
Q 019734 241 LCYSFGEGLPLSHRQARKWMKRAADC 266 (336)
Q Consensus 241 ~~~~~~~g~~~~~~~A~~~~~~a~~~ 266 (336)
.|++.. .|.--+...+++-.+.
T Consensus 203 LChl~~----~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 203 LCHLCK----ADEVNAQRALEKYQEL 224 (288)
T ss_pred HHhHhc----ccHHHHHHHHHHHHhc
Confidence 777542 2454555555554444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00032 Score=48.32 Aligned_cols=63 Identities=13% Similarity=0.219 Sum_probs=50.4
Q ss_pred HHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHH
Q 019734 108 GKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFN 174 (336)
Q Consensus 108 g~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 174 (336)
..+|.. .+++++|+.++++++.. .++..++.+|.++...|++++|+..|.++++. +++.+...
T Consensus 2 ~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQ----QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHh----CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 345555 58999999999999887 47888899999999999999999999998865 45554443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.001 Score=60.08 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 233 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 233 ~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
..++.||+.||.+.. ++.+|+.+-.+++.. ++..+.|.-|.++...|+++.|+..|++++...
T Consensus 257 ~~~~lNlA~c~lKl~----~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLK----EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHhhHHHHHHHhhh----hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 345678888887644 777888888888764 667788888888888888888888888887754
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.029 Score=48.21 Aligned_cols=118 Identities=8% Similarity=-0.065 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhccCCHHHHHHHHH
Q 019734 217 LQEAARWYLRAAEGGYVRAMYNTSLCYSFG-EGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLE 293 (336)
Q Consensus 217 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~-~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~~~~~A~~~~~ 293 (336)
.+-|..-.++..+.++-.....|+..|..- .|.. ....|...|+.-.++-. +....-.+.++..++++++|...++
T Consensus 153 ~d~A~~~lk~mq~ided~tLtQLA~awv~la~gge-k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 153 FDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGE-KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHhccch-hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 344444444444444433344444444332 1111 25555555555555322 2223334445555566666666666
Q ss_pred HHHHcCcHH--HHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCCC
Q 019734 294 LATRAGETA--ADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 336 (336)
Q Consensus 294 ~A~~~~~~~--a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (336)
.|+...+.+ ...++-....+ .+.+.+-......+++..+|+|
T Consensus 232 eaL~kd~~dpetL~Nliv~a~~-~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 232 EALDKDAKDPETLANLIVLALH-LGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHhccCCCHHHHHHHHHHHHH-hCCChHHHHHHHHHHHhcCCcc
Confidence 665543322 22222222221 2222223333555555555555
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.055 Score=50.21 Aligned_cols=245 Identities=14% Similarity=0.049 Sum_probs=161.5
Q ss_pred CChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHH-----HHHHHHcC--CHHHHHHHHHHHhc
Q 019734 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDS-----FLKGAARG--STLAMVDAGLMYWE 149 (336)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~-----~~~A~~~~--~~~a~~~lg~~~~~ 149 (336)
....++.|..+|+-.++..|. +.+.-+|.-=..+....|...-.+.++-. |++-+..+ |-++|+.+-.+-..
T Consensus 256 ~qkE~ERar~iykyAld~~pk-~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~ 334 (677)
T KOG1915|consen 256 RQKEYERARFIYKYALDHIPK-GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEES 334 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHh
Confidence 335566666667766666655 34555554444444433444445555433 44444443 67899999999988
Q ss_pred CCCHHHHHHHHHHHHHcCCHH---------HHHHHHHHHHH-------HHHHHHHHHHHHcC------CHHHHHHHHHHH
Q 019734 150 MDKKEAAISLYRQAAVLGDPA---------GQFNLGISYLQ-------EEAVKLLYQASIAG------HVRAQYQLALCL 207 (336)
Q Consensus 150 ~~~~~~A~~~~~~a~~~~~~~---------a~~~Lg~~~~~-------~~A~~~~~ka~~~~------~~~a~~~lg~~~ 207 (336)
.|+.+.-.+.|.+|+..-.|. .+..+-.+++. +.+.+.|+..++.- .+..+...+...
T Consensus 335 ~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 335 VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 999999999999999663221 11222222222 78888898888852 455666677766
Q ss_pred hcCCCCccCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHH--HHHHHHHHhhc
Q 019734 208 HRGRGVDFNLQEAARWYLRAAEGGY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGK--AQLEHGLGLFT 281 (336)
Q Consensus 208 ~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~--a~~~lg~~~~~ 281 (336)
.. ..|...|...+-.|+-.-. ...+..|-.-+ ++++.....|++-++-++.. ++...|.+-..
T Consensus 415 IR----q~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL-------~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~ 483 (677)
T KOG1915|consen 415 IR----QLNLTGARKILGNAIGKCPKDKLFKGYIELELQL-------REFDRCRKLYEKFLEFSPENCYAWSKYAELETS 483 (677)
T ss_pred HH----HcccHHHHHHHHHHhccCCchhHHHHHHHHHHHH-------hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHH
Confidence 66 6788899998888865422 22333332222 28899999999999865544 44556666667
Q ss_pred cCCHHHHHHHHHHHHHcCcHHH--HHHHHHHHhhcChhcHHHHHHHHHHhhcCC
Q 019734 282 EGEMMKAVVYLELATRAGETAA--DHVKNVILQQLSATSRDRAMLVVDSWRAMP 333 (336)
Q Consensus 282 ~~~~~~A~~~~~~A~~~~~~~a--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 333 (336)
+||.+.|...|+.|+....-+. ......+-...+.++..++..+...+++..
T Consensus 484 LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 484 LGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 9999999999999998754332 223355556667888899999988887654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0019 Score=49.23 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=62.4
Q ss_pred HHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHH
Q 019734 108 GKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP------AGQFNLGISY 179 (336)
Q Consensus 108 g~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~------~a~~~Lg~~~ 179 (336)
|.+...+ ++++.|++.|.+++.+ ..+.++++.+..+.-.|+.++|+.-+.+|++...+ .++...|.+|
T Consensus 50 ~valaE~----g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 50 AIALAEA----GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHhc----cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 5666664 8999999999999887 57899999999999999999999999999887222 3444455555
Q ss_pred HH----HHHHHHHHHHHHcCCHH
Q 019734 180 LQ----EEAVKLLYQASIAGHVR 198 (336)
Q Consensus 180 ~~----~~A~~~~~ka~~~~~~~ 198 (336)
.. +.|..-|+.|+++|.+-
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCHH
Confidence 43 44555555555444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0013 Score=56.59 Aligned_cols=93 Identities=18% Similarity=0.055 Sum_probs=77.1
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----CCH
Q 019734 200 QYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----GHG 269 (336)
Q Consensus 200 ~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-----~~~ 269 (336)
.|+.+.-+.. .+||..|..-|..-++.. -++|+|+||.++.. .++++.|...|..++.. .-+
T Consensus 144 ~Y~~A~~~~k----sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa~~f~~~~k~~P~s~KAp 215 (262)
T COG1729 144 LYNAALDLYK----SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAAYIFARVVKDYPKSPKAP 215 (262)
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHHHHHHHHHHhCCCCCCCh
Confidence 5666655555 688999999999988753 48999999999965 33999999999999873 347
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHcCc
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~ 300 (336)
++++.||.+..+.|+.++|+..|++.+..-+
T Consensus 216 dallKlg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 216 DALLKLGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 8999999999999999999999999988643
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.014 Score=52.02 Aligned_cols=168 Identities=13% Similarity=0.042 Sum_probs=111.3
Q ss_pred cCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHH----HHHHHHH
Q 019734 118 RKNLDKALDSFLKGAARGS---TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD--PAGQFNLGISYLQ----EEAVKLL 188 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~----~~A~~~~ 188 (336)
.+|++.|+.+++-....+. .....-+|.+++..||+++|...|.-+.+.++ .+...+|+-++.. .+|...-
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 3799999999998876643 34566789999999999999999999887754 4566777777765 5555555
Q ss_pred HHHHHcC-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC
Q 019734 189 YQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG 267 (336)
Q Consensus 189 ~ka~~~~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~ 267 (336)
.++.+.- -.+-+++|+.-+. |.+ -+.-|...+ ++..+-+..|+.++.-.. .+.+|+..|++.+.-+
T Consensus 115 ~ka~k~pL~~RLlfhlahkln-------dEk-~~~~fh~~L-qD~~EdqLSLAsvhYmR~----HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 115 EKAPKTPLCIRLLFHLAHKLN-------DEK-RILTFHSSL-QDTLEDQLSLASVHYMRM----HYQEAIDVYKRVLQDN 181 (557)
T ss_pred hhCCCChHHHHHHHHHHHHhC-------cHH-HHHHHHHHH-hhhHHHHHhHHHHHHHHH----HHHHHHHHHHHHHhcC
Confidence 5543321 1234555555432 222 222333322 223344555665553322 6889999999987643
Q ss_pred C--HHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 268 H--GKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 268 ~--~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
. ...-.+++.||++..-++-+.+.++--+++
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 2 222367889999999999999998888875
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00019 Score=44.27 Aligned_cols=41 Identities=24% Similarity=0.291 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGI 177 (336)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~ 177 (336)
|.+++.+|..|...|++++|+.+|+++++. ++++++..||.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356777888888888888888888887754 67777777764
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.027 Score=45.87 Aligned_cols=123 Identities=14% Similarity=-0.014 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH----HHHHHHHHH
Q 019734 119 KNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL---GDPAGQFNLGISYLQ----EEAVKLLYQ 190 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~----~~A~~~~~k 190 (336)
-|++..+.-..+.... ....-.+.||..+.+.|++.+|+..|++++.- +++..+..+++.... ..|...+++
T Consensus 70 ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 70 LDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred cChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3555554444444443 24456788999999999999999999999864 778777777777766 666666777
Q ss_pred HHHc----CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHc
Q 019734 191 ASIA----GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVRAMYNTSLCYSF 245 (336)
Q Consensus 191 a~~~----~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~ 245 (336)
..+- ..++....+|..|.- .+.+..|...|+.+++- ..+.+....+.++..
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa----~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~ 205 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAA----QGKYADAESAFEVAISYYPGPQARIYYAEMLAK 205 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHh----cCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 6653 256677778888776 57777788888887765 455666666666643
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00027 Score=47.95 Aligned_cols=64 Identities=6% Similarity=-0.093 Sum_probs=53.3
Q ss_pred CCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 019734 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (336)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (336)
+..|++.+|+..+.++++..|+ +..+.+.||.+|.. .+++++|...++++.... ++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLK----QGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHH----TT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4579999999999999999888 99999999999999 699999999999998763 3555555443
|
... |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0028 Score=58.52 Aligned_cols=105 Identities=21% Similarity=0.127 Sum_probs=68.9
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHH
Q 019734 118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQA 191 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka 191 (336)
.++++.|+..|++..+.. +++...++.++...++..+|+..+.+++.. .+.+.+...+..+.. +.|+...+++
T Consensus 182 t~~~~~ai~lle~L~~~~-pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~a 260 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERD-PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKA 260 (395)
T ss_pred cccHHHHHHHHHHHHhcC-CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 356777777777755443 556666777777777777777777777753 355555556666655 6777777777
Q ss_pred HHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 019734 192 SIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 227 (336)
Q Consensus 192 ~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a 227 (336)
++. .+.+.|+.|+.+|.. .+|++.|+..++.+
T Consensus 261 v~lsP~~f~~W~~La~~Yi~----~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 261 VELSPSEFETWYQLAECYIQ----LGDFENALLALNSC 294 (395)
T ss_pred HHhCchhHHHHHHHHHHHHh----cCCHHHHHHHHhcC
Confidence 654 456677777777776 67777777666543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.078 Score=51.00 Aligned_cols=180 Identities=12% Similarity=0.042 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHHHc-------CC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHH---
Q 019734 119 KNLDKALDSFLKGAAR-------GS-TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD------PAGQFNLGISYLQ--- 181 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~-------~~-~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~~~~--- 181 (336)
++..+-+.-|..|+.. |. ..-+..+|.+|...|+.+.|+..|.+|..-.. ++.|.+-|..-+.
T Consensus 361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN 440 (835)
T ss_pred CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh
Confidence 4566666666666653 21 23455666666666666666666666664421 2233333322222
Q ss_pred -HHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHH
Q 019734 182 -EEAVKLLYQASIA-G-------------------HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYN 238 (336)
Q Consensus 182 -~~A~~~~~ka~~~-~-------------------~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~ 238 (336)
+.|+.+.+.|... . ....|..+++..+. .+-++.-...|.+.++. -.+....|
T Consensus 441 ~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs----~gtfestk~vYdriidLriaTPqii~N 516 (835)
T KOG2047|consen 441 FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES----LGTFESTKAVYDRIIDLRIATPQIIIN 516 (835)
T ss_pred HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5555555555321 0 01122233333222 23344445555555443 34555555
Q ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-------hhccCCHHHHHHHHHHHHHcCcHHHHHH
Q 019734 239 TSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLG-------LFTEGEMMKAVVYLELATRAGETAADHV 306 (336)
Q Consensus 239 lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~-------~~~~~~~~~A~~~~~~A~~~~~~~a~~~ 306 (336)
.|..+.... -++++.+.|++.+..-.....+.+=.. -+.....+.|...|++|++.-++..+..
T Consensus 517 yAmfLEeh~----yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKt 587 (835)
T KOG2047|consen 517 YAMFLEEHK----YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKT 587 (835)
T ss_pred HHHHHHhhH----HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 555554322 456666666666554222111111111 1123356666666666666555544433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.042 Score=45.27 Aligned_cols=211 Identities=21% Similarity=0.156 Sum_probs=134.1
Q ss_pred hhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCHH
Q 019734 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----RGSTLAMVDAGLMYWEMDKKE 154 (336)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~----~~~~~a~~~lg~~~~~~~~~~ 154 (336)
+.+..+...+..................++..+.. .+++..++..+..+.. ......+..+|..+...+++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLK----LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYE 112 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH----cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHH
Confidence 44445544444444443332235666667777666 4778888888887764 245667777888888888888
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHH-HHHH----HHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCCccCHHHHHH
Q 019734 155 AAISLYRQAAVL--GDPAGQFNLGI-SYLQ----EEAVKLLYQASIAG-----HVRAQYQLALCLHRGRGVDFNLQEAAR 222 (336)
Q Consensus 155 ~A~~~~~~a~~~--~~~~a~~~Lg~-~~~~----~~A~~~~~ka~~~~-----~~~a~~~lg~~~~~g~g~~~~~~~A~~ 222 (336)
+++..+.+++.. .+.......+. ++.. ++|+.+|++++... .......++..+.. .+++..++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~ 188 (291)
T COG0457 113 EALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEA----LGRYEEALE 188 (291)
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----hcCHHHHHH
Confidence 888888888764 33233333333 4444 78888888876632 23344444444444 567888888
Q ss_pred HHHHHHHC--C-CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 223 WYLRAAEG--G-YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 223 ~~~~a~~~--~-~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
.+.++... . .......++..+.... ++.+|...+.+++.... ......++..+...++.+++...+.+++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 189 LLEKALKLNPDDDAEALLNLGLLYLKLG----KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHhhCcccchHHHHHhhHHHHHcc----cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88877654 3 3566777777775422 67788888888777543 35566666666666668888888888777
Q ss_pred cCcH
Q 019734 298 AGET 301 (336)
Q Consensus 298 ~~~~ 301 (336)
....
T Consensus 265 ~~~~ 268 (291)
T COG0457 265 LDPD 268 (291)
T ss_pred hCcc
Confidence 6554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.05 Score=44.84 Aligned_cols=206 Identities=20% Similarity=0.152 Sum_probs=138.0
Q ss_pred CCHHHHHHHHHHHHHcCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH----HHHHH
Q 019734 119 KNLDKALDSFLKGAARGS----TLAMVDAGLMYWEMDKKEAAISLYRQAAV----LGDPAGQFNLGISYLQ----EEAVK 186 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~Lg~~~~~----~~A~~ 186 (336)
.....+...+..+..... .......+..+...+++..++..+..... ......++.+|..+.. ..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 456677777777776632 57778888888888888888888888764 3556677777777776 67888
Q ss_pred HHHHHHHc--CCHHHHHHHHH-HHhcCCCCccCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCcccHHHHHH
Q 019734 187 LLYQASIA--GHVRAQYQLAL-CLHRGRGVDFNLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQARK 258 (336)
Q Consensus 187 ~~~ka~~~--~~~~a~~~lg~-~~~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~g~~~~~~~A~~ 258 (336)
.+.++... .........+. ++.. .++++.|...|.+++... .......++..+.. ..+.++++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~ 188 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYE----LGDYEEALELYEKALELDPELNELAEALLALGALLEA----LGRYEEALE 188 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----hcCHHHHHH
Confidence 88888764 23233444444 5555 688888888888886632 33444555554432 238888888
Q ss_pred HHHHHHHc--C-CHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH--HHHHHHHHHHhhcChhcHHHHHHHHHHhhcCC
Q 019734 259 WMKRAADC--G-HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET--AADHVKNVILQQLSATSRDRAMLVVDSWRAMP 333 (336)
Q Consensus 259 ~~~~a~~~--~-~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~--~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 333 (336)
.+.+++.. . .......++..+...+++++|...+..++...+. ........... .....+.+.....+.....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL--ELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH--HcCCHHHHHHHHHHHHHhC
Confidence 88888875 3 3466788888888888888888888888887654 33333333333 2335666666666655544
Q ss_pred C
Q 019734 334 S 334 (336)
Q Consensus 334 ~ 334 (336)
|
T Consensus 267 ~ 267 (291)
T COG0457 267 P 267 (291)
T ss_pred c
Confidence 4
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0053 Score=56.74 Aligned_cols=113 Identities=19% Similarity=0.091 Sum_probs=88.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccC
Q 019734 143 AGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFN 216 (336)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~ 216 (336)
|-.++...++++.|+..|++..+.+ |++...|+.++.. .+|+..+.+++.. .+...+...+.++.. .++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~-pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~----k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD-PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS----KKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC-CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCC
Confidence 3344455688999999999977654 6777788888877 8889999998875 367777788888887 788
Q ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019734 217 LQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 264 (336)
Q Consensus 217 ~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~ 264 (336)
++.|+...+++.+ +.+..+|+.|+.+|.... +++.|+..+.-..
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~----d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLG----DFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcC----CHHHHHHHHhcCc
Confidence 8999999999865 467888999999997533 8998887776543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.12 Score=48.09 Aligned_cols=244 Identities=12% Similarity=0.022 Sum_probs=144.9
Q ss_pred ChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCHHHH
Q 019734 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAA 156 (336)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A 156 (336)
.|+...|..++.+|.+-.|+..-...+...-+- -+..+.|...|++-+-. -...++...+..-...|+..-|
T Consensus 154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElR-------ykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELR-------YKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-------hhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHH
Confidence 366777777777887776553222222222222 25677788888876654 3556677777777778888888
Q ss_pred HHHHHHHHHc-CCH--HHHHHHHHHHHH------HHHHHHHHHHHH----------------------------------
Q 019734 157 ISLYRQAAVL-GDP--AGQFNLGISYLQ------EEAVKLLYQASI---------------------------------- 193 (336)
Q Consensus 157 ~~~~~~a~~~-~~~--~a~~~Lg~~~~~------~~A~~~~~ka~~---------------------------------- 193 (336)
...|.+|++. ++- ...+..+.+... +.|.-.|+-|++
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 8888888865 332 222222322222 222222332222
Q ss_pred ----------c--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHH---------HHHHHHHHHHcCCCCccc
Q 019734 194 ----------A--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVR---------AMYNTSLCYSFGEGLPLS 252 (336)
Q Consensus 194 ----------~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~---------a~~~lg~~~~~~~g~~~~ 252 (336)
. -+-++++.+-.+-.. .+|.+.-.+.|++|+..-.+. .+..+-.++.... ..+|
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~----~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEl-e~ed 381 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEES----VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEEL-EAED 381 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH-Hhhh
Confidence 1 134556665555555 578888889999986542211 1222222222211 2558
Q ss_pred HHHHHHHHHHHHHcC-----------------------CHHHHHHHHHHh----------------hccCCHHHHHHHHH
Q 019734 253 HRQARKWMKRAADCG-----------------------HGKAQLEHGLGL----------------FTEGEMMKAVVYLE 293 (336)
Q Consensus 253 ~~~A~~~~~~a~~~~-----------------------~~~a~~~lg~~~----------------~~~~~~~~A~~~~~ 293 (336)
.+.+.+.|+.+++.= -..+.-.||.+. ...++++.....|+
T Consensus 382 ~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 382 VERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888888888887631 112222233211 12568999999999
Q ss_pred HHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCC
Q 019734 294 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMP 333 (336)
Q Consensus 294 ~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 333 (336)
+-++-++.++............-++.|.+..+....++.|
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 9999998888777776666666677777777777666544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.059 Score=49.29 Aligned_cols=78 Identities=12% Similarity=0.068 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHc---C
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------GSTLAMVDAGLMYWE---MDKKEAAISLYRQAAVL---G 167 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~------~~~~a~~~lg~~~~~---~~~~~~A~~~~~~a~~~---~ 167 (336)
.++..+.|=..|.. .+|++.-+.+.+..-.. ..+...+.+|..+-+ .||.++|+..+..++.. .
T Consensus 140 s~div~~lllSyRd----iqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~ 215 (374)
T PF13281_consen 140 SPDIVINLLLSYRD----IQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP 215 (374)
T ss_pred ChhHHHHHHHHhhh----hhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC
Confidence 56666777777777 68888888888866544 256677788888877 68999999999886644 5
Q ss_pred CHHHHHHHHHHHHH
Q 019734 168 DPAGQFNLGISYLQ 181 (336)
Q Consensus 168 ~~~a~~~Lg~~~~~ 181 (336)
+++.+..+|.+|..
T Consensus 216 ~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 216 DPDTLGLLGRIYKD 229 (374)
T ss_pred ChHHHHHHHHHHHH
Confidence 68888888888875
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.043 Score=46.60 Aligned_cols=183 Identities=20% Similarity=0.217 Sum_probs=118.5
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CC-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cC
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GS-------TLAMVDAGLMYWEMDKKEAAISLYRQAAV----LG 167 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~ 167 (336)
-+..+..-+.+|.. .+++++|...+++|++- .+ +.++-..+.+......+.+++.+|++|.. .|
T Consensus 30 aas~yekAAvafRn----Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 30 AASLYEKAAVAFRN----AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred hHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 34445555666666 58999999999999853 22 34556667777777899999999999974 46
Q ss_pred CHH----HHHHHHHHHHH---HHHHHHHHHHHHc---CC--HHH---HHHHHHHHhcCCCCccCHHHHHHHHHHHHH---
Q 019734 168 DPA----GQFNLGISYLQ---EEAVKLLYQASIA---GH--VRA---QYQLALCLHRGRGVDFNLQEAARWYLRAAE--- 229 (336)
Q Consensus 168 ~~~----a~~~Lg~~~~~---~~A~~~~~ka~~~---~~--~~a---~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--- 229 (336)
.++ ++-.-|.+... ++|++.|++++.. ++ ..+ +-.+++++.. .+.+++|...+.|-..
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr----l~kf~Eaa~a~lKe~~~~~ 181 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR----LEKFTEAATAFLKEGVAAD 181 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh----hHHhhHHHHHHHHhhhHHH
Confidence 654 33444555555 9999999999753 22 223 3445556665 5678888877766421
Q ss_pred ---CCCH--HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc------CCHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 019734 230 ---GGYV--RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC------GHGKAQLEHGLGLFTEGEMMKAVVYLELA 295 (336)
Q Consensus 230 ---~~~~--~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~A 295 (336)
.-.. .+....-.+|+. ..|+..|...|+..... .+..++-+|-. .++.||.++......-.
T Consensus 182 ~~~~y~~~~k~~va~ilv~L~----~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~-ayd~gD~E~~~kvl~sp 253 (308)
T KOG1585|consen 182 KCDAYNSQCKAYVAAILVYLY----AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT-AYDEGDIEEIKKVLSSP 253 (308)
T ss_pred HHhhcccHHHHHHHHHHHHhh----HHHHHHHHHHhcchhcCccccChHHHHHHHHHHH-HhccCCHHHHHHHHcCh
Confidence 1112 223333333433 23999999999998764 23445566655 56789998887776554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.12 Score=49.76 Aligned_cols=214 Identities=15% Similarity=0.029 Sum_probs=122.7
Q ss_pred CCChhHHhhhHHHHHHHHHhCC---CCC-HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC------CHHHHHHHHH
Q 019734 76 FTLPQLRAASLVCKSWNDALRP---LRE-AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG------STLAMVDAGL 145 (336)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~---~~~-~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~lg~ 145 (336)
+..|+..+-+..|..+.+.-.. .|. ...+..+|..|.. .++++.|...|++|.... -...|.+.|.
T Consensus 358 l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~----~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN----NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAE 433 (835)
T ss_pred hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh----cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHH
Confidence 4455555555555555554221 122 3466778888888 588999999999988763 2566778888
Q ss_pred HHhcCCCHHHHHHHHHHHHHc-CC-----------H--------HHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHH
Q 019734 146 MYWEMDKKEAAISLYRQAAVL-GD-----------P--------AGQFNLGISYLQ----EEAVKLLYQASIA--GHVRA 199 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~-~~-----------~--------~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a 199 (336)
+-....+++.|+.+.++|... .. + ..|..++..... +.-...|.+.+++ -.|..
T Consensus 434 mElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi 513 (835)
T KOG2047|consen 434 MELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI 513 (835)
T ss_pred HHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH
Confidence 877888899999988888632 11 1 112222222221 5555666666665 36677
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----cCCCCcccHHHHHHHHHHHHHcCCHHHHH--
Q 019734 200 QYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYS----FGEGLPLSHRQARKWMKRAADCGHGKAQL-- 273 (336)
Q Consensus 200 ~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~----~~~g~~~~~~~A~~~~~~a~~~~~~~a~~-- 273 (336)
..|.|.+++. .+-++++.+.|++.+..=..+..+.+=..|+ ...| ....+.|...|++|++.-++...-
T Consensus 514 i~NyAmfLEe----h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg-g~klEraRdLFEqaL~~Cpp~~aKti 588 (835)
T KOG2047|consen 514 IINYAMFLEE----HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG-GTKLERARDLFEQALDGCPPEHAKTI 588 (835)
T ss_pred HHHHHHHHHh----hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 7777777776 6667777777777665422111111111111 1111 236777777777777743333322
Q ss_pred --HHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 274 --EHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 274 --~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
..+.+-.+.|--..|+..|++|...
T Consensus 589 yLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 589 YLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 2222223355556666666665543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.12 Score=44.32 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CC---H
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD---P 169 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~---~ 169 (336)
.+.-+|.-|..-.+ .||+++|+.+|++..... ...++..++..++..+++++|+..+.+-+.. ++ .
T Consensus 33 p~~~LY~~g~~~L~----~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 33 PASELYNEGLTELQ----KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 34445555555555 366666666666655441 2456666666776667777776666666543 22 3
Q ss_pred HHHHHHHHHHH
Q 019734 170 AGQFNLGISYL 180 (336)
Q Consensus 170 ~a~~~Lg~~~~ 180 (336)
-+++..|.++.
T Consensus 109 Y~~YlkgLs~~ 119 (254)
T COG4105 109 YAYYLKGLSYF 119 (254)
T ss_pred HHHHHHHHHHh
Confidence 34444555444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0017 Score=44.65 Aligned_cols=52 Identities=21% Similarity=0.165 Sum_probs=42.9
Q ss_pred cccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH
Q 019734 250 PLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 301 (336)
Q Consensus 250 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~ 301 (336)
.+++++|+.++++++.. +++..++..|.++...|++++|...|+++++.++.
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 34899999999999875 55777788999999999999999999999887653
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.011 Score=46.22 Aligned_cols=84 Identities=12% Similarity=0.141 Sum_probs=61.4
Q ss_pred hHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-----CHH
Q 019734 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STL 138 (336)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~-----~~~ 138 (336)
+.++...+...+..|+|.+|+..+..+...-|-.+ -..+...||.+|.. .+++++|+..+++-+++. -+.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~----~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK----QGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 45667777788888888888877777777766432 35678888888887 578888888888888762 246
Q ss_pred HHHHHHHHHhcCCC
Q 019734 139 AMVDAGLMYWEMDK 152 (336)
Q Consensus 139 a~~~lg~~~~~~~~ 152 (336)
+++..|..++...+
T Consensus 86 a~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 86 AYYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777777766543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.008 Score=48.63 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=14.2
Q ss_pred HHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Q 019734 81 LRAASLVCKSWNDALRPLREAMVLLRWGKRFKH 113 (336)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~ 113 (336)
++.|...+...+...|. +++++++.|.++.+
T Consensus 7 FE~ark~aea~y~~nP~--DadnL~~WG~ALLE 37 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL--DADNLTNWGGALLE 37 (186)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH--hHHHHHHHHHHHHH
Confidence 33444444444444444 55555555555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0013 Score=40.42 Aligned_cols=41 Identities=12% Similarity=0.064 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (336)
+.+++.||..|.. .|++++|+++|+++++. +++.++..||.
T Consensus 1 p~~~~~la~~~~~----~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRR----LGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578889999999 68999999999999987 68999988875
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.061 Score=43.87 Aligned_cols=117 Identities=12% Similarity=0.075 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHH
Q 019734 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPAG 171 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a 171 (336)
+...-.+.||..... .|+..+|..+|++++.- +++..+..++...+..+++..|...+++.-+- ..|..
T Consensus 87 pTvqnr~rLa~al~e----lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 87 PTVQNRYRLANALAE----LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hhHHHHHHHHHHHHH----hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 345667888888888 58999999999999875 68888899999999999999999999998765 46778
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 019734 172 QFNLGISYLQ----EEAVKLLYQASIA-GHVRAQYQLALCLHRGRGVDFNLQEAARW 223 (336)
Q Consensus 172 ~~~Lg~~~~~----~~A~~~~~ka~~~-~~~~a~~~lg~~~~~g~g~~~~~~~A~~~ 223 (336)
+..+|..|.. ..|...|+.+++- ..+.+-...+.++.. .++..+|..-
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~----qgr~~ea~aq 215 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAK----QGRLREANAQ 215 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHH----hcchhHHHHH
Confidence 8889999887 7788889888875 566777777777765 4444444433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.39 Score=48.02 Aligned_cols=227 Identities=15% Similarity=0.017 Sum_probs=142.4
Q ss_pred CChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHH
Q 019734 63 SLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAM 140 (336)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~ 140 (336)
.+++..+.-+...+..+++..|...+.+.+++.|+...+.++ -|....+ .+..++|..+++.-... .+...+
T Consensus 7 a~~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vL--kaLsl~r----~gk~~ea~~~Le~~~~~~~~D~~tL 80 (932)
T KOG2053|consen 7 AMSERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVL--KALSLFR----LGKGDEALKLLEALYGLKGTDDLTL 80 (932)
T ss_pred ccHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHH--HHHHHHH----hcCchhHHHHHhhhccCCCCchHHH
Confidence 456677888888899999999999999999998874444444 4555555 46788888888754443 466777
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--------HHHHHHHHHHHHcCCHHHHHHHHHH--Hhc
Q 019734 141 VDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQ--------EEAVKLLYQASIAGHVRAQYQLALC--LHR 209 (336)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~--------~~A~~~~~ka~~~~~~~a~~~lg~~--~~~ 209 (336)
--+-.+|...+..++|+.+|++++.. ...+-++.+-++|.+ .-|++.|+- --.+++|-+..| +.+
T Consensus 81 q~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~----~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 81 QFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN----FPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCcccchHHHHHHHHHH
Confidence 88999999999999999999999976 447777888888887 344444441 112334433332 223
Q ss_pred CC-CCcc-----CHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-c---CCHHHHHHHH
Q 019734 210 GR-GVDF-----NLQEAARWYLRAAEGG-Y--VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD-C---GHGKAQLEHG 276 (336)
Q Consensus 210 g~-g~~~-----~~~~A~~~~~~a~~~~-~--~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg 276 (336)
+. +... -..-|....++.++.+ . ..+-..|-..-..+.| .+++|..++..-.. . .+......-+
T Consensus 157 s~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~---k~~eal~~l~~~la~~l~~~~~~l~~~~~ 233 (932)
T KOG2053|consen 157 SIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQG---KYQEALEFLAITLAEKLTSANLYLENKKL 233 (932)
T ss_pred hccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 22 1111 1123444444444443 2 2222222222233333 79999999955433 2 2222223334
Q ss_pred HHhhccCCHHHHHHHHHHHHHcCcHH
Q 019734 277 LGLFTEGEMMKAVVYLELATRAGETA 302 (336)
Q Consensus 277 ~~~~~~~~~~~A~~~~~~A~~~~~~~ 302 (336)
..+...+++.+-.+.-.+.+..++.+
T Consensus 234 dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 234 DLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 55666777877777777777766554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00056 Score=39.54 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=25.2
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHH
Q 019734 127 SFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAI 157 (336)
Q Consensus 127 ~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~ 157 (336)
+|++|++. +++.++++||.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 36788876 58888888888888888888886
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.17 Score=43.64 Aligned_cols=153 Identities=12% Similarity=-0.020 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQASIAGHVRAQYQLALCLHRGRGV 213 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~ 213 (336)
.....-+.+|...+++++|.....+ .++.++...=-.++.. +.|...+++..+.++-.....|+..+..--+-
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~---~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHL---GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhcc
Confidence 4444455666666666666666555 1222222111112222 55555555555555544555566555421111
Q ss_pred ccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHH
Q 019734 214 DFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAV 289 (336)
Q Consensus 214 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~ 289 (336)
......|.-+|+.-.+.- .+......+.|+.. .+++++|...++.++.. ++++...|+-.+-...|...++.
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~----~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ----LGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHH----hcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence 233777777777776642 34445555555543 23778888888777764 56777777777666667655555
Q ss_pred HHHHHHHH
Q 019734 290 VYLELATR 297 (336)
Q Consensus 290 ~~~~~A~~ 297 (336)
.-+-.-+.
T Consensus 262 ~r~l~QLk 269 (299)
T KOG3081|consen 262 ERNLSQLK 269 (299)
T ss_pred HHHHHHHH
Confidence 44444433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.033 Score=43.50 Aligned_cols=79 Identities=20% Similarity=0.303 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---C--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CC
Q 019734 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---G--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL-----GD 168 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~---~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~ 168 (336)
..+..+|.-|.-.+. .+++.+|++.|+..-.. | ...+.+.|+..|+..+++++|+..+.+-+.+ ..
T Consensus 8 ~~~~~ly~~a~~~l~----~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 8 KSPQELYQEAQEALQ----KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 357778888888877 68999999999987765 2 4689999999999999999999999999876 34
Q ss_pred HHHHHHHHHHHHH
Q 019734 169 PAGQFNLGISYLQ 181 (336)
Q Consensus 169 ~~a~~~Lg~~~~~ 181 (336)
+-+++..|.++..
T Consensus 84 dYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 84 DYAYYMRGLSYYE 96 (142)
T ss_pred cHHHHHHHHHHHH
Confidence 5688888888875
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0013 Score=37.82 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHcCc
Q 019734 269 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 269 ~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~ 300 (336)
+.+++++|.+|...|++++|+..|++|++..+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 35788999999999999999999999988654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0015 Score=37.38 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHcCc
Q 019734 269 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 269 ~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~ 300 (336)
+.+++.+|.+|+..|++++|+.+|+++++..+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 35678999999999999999999999988654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.65 Score=48.80 Aligned_cols=198 Identities=14% Similarity=0.017 Sum_probs=147.0
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHH-HHHHHHHHHH
Q 019734 125 LDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL----------GDPAGQFNLGISYLQ-EEAVKLLYQA 191 (336)
Q Consensus 125 ~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~~~~-~~A~~~~~ka 191 (336)
.+-|++-+.. +....|.+.-..+.+.++.++|++.+++|+.. +...|++||=+.|-. +.-.+.|++|
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 4445555544 45666666666667889999999999999843 334566777666663 8888899999
Q ss_pred HHcCC-HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH---
Q 019734 192 SIAGH-VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-G-YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD--- 265 (336)
Q Consensus 192 ~~~~~-~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~-~-~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~--- 265 (336)
.+.-+ ...+..|..+|.. ...+++|.++|+..+.. + ....|..++..+++.. +-++|...+.+|+.
T Consensus 1524 cqycd~~~V~~~L~~iy~k----~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n----e~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1524 CQYCDAYTVHLKLLGIYEK----SEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQN----EAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHhcchHHHHHHHHHHHHH----hhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhccc----HHHHHHHHHHHHHhhcc
Confidence 88755 4788899999998 67899999999998765 3 6778888888887533 55888889999987
Q ss_pred -cCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhh
Q 019734 266 -CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 266 -~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 330 (336)
+.+....-..+.+-+..||.+.+...|+--+...+..-..+.-.+-..+..++.+.++.++.+..
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 35677777888889999999999999999888776555555555555555555555555555444
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.011 Score=47.88 Aligned_cols=29 Identities=14% Similarity=0.037 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhcC
Q 019734 122 DKALDSFLKGAAR--GSTLAMVDAGLMYWEM 150 (336)
Q Consensus 122 ~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~ 150 (336)
+.|.+.++..... .+++++++-|..+.+.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLEL 38 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLEL 38 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHH
Confidence 4445555544333 3455555555555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0032 Score=35.99 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
+++++.+|.+++..|++++|+.+|+++++.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 467888999999999999999999998764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0013 Score=37.99 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=24.4
Q ss_pred HHHHHHc--CCHHHHHHHHHHhhccCCHHHHH
Q 019734 260 MKRAADC--GHGKAQLEHGLGLFTEGEMMKAV 289 (336)
Q Consensus 260 ~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~ 289 (336)
|++|++. +++.++++||.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6777764 67888888998888888888875
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0038 Score=35.76 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
+.+++++|.+|...|++++|+..|+++++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 356777888888888888888888877754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.28 Score=46.90 Aligned_cols=106 Identities=20% Similarity=0.153 Sum_probs=64.1
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHH----HHHH
Q 019734 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG------DPAGQFNLGISYLQ----EEAV 185 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~~~~----~~A~ 185 (336)
..+.+.|.+.+...... +..--.+.-|+++...|+.++|+.+|++++... ..-.++.+|.++.- ++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 56677777777777664 455566677778877788888888888776431 12234556666655 6666
Q ss_pred HHHHHHHHcC-CHH--HHHHHHHHHhcCCCCccCH-------HHHHHHHHHH
Q 019734 186 KLLYQASIAG-HVR--AQYQLALCLHRGRGVDFNL-------QEAARWYLRA 227 (336)
Q Consensus 186 ~~~~ka~~~~-~~~--a~~~lg~~~~~g~g~~~~~-------~~A~~~~~~a 227 (336)
.+|.+..+.. -.. -.|..|.|+.. .++. ++|..+|.++
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~----l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLM----LGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHh----hccchhhhhhHHHHHHHHHHH
Confidence 7776666553 222 23445555554 3333 5555555554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0047 Score=36.10 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019734 139 AMVDAGLMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (336)
++.+||.+|...|++++|+.+|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567899999999999999999999653
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0041 Score=36.33 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=23.0
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 271 AQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 271 a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
++.+||.+|...|++++|+.+|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999664
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.24 Score=47.32 Aligned_cols=140 Identities=16% Similarity=0.118 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH----------------HHHHHHHHHHHH--cCCHHHHHHHHHHHhcC
Q 019734 150 MDKKEAAISLYRQAAVLGDPAGQF-NLGISYLQ----------------EEAVKLLYQASI--AGHVRAQYQLALCLHRG 210 (336)
Q Consensus 150 ~~~~~~A~~~~~~a~~~~~~~a~~-~Lg~~~~~----------------~~A~~~~~ka~~--~~~~~a~~~lg~~~~~g 210 (336)
.||-+.++..+.++.+.++..+.+ .|..+.+. +.|...++.... ++.+--.+.-|.++..
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~- 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL- 279 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Confidence 478888888888888765433221 11111111 456666666655 3555566777888877
Q ss_pred CCCccCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH---HHHHHHHHHhhc
Q 019734 211 RGVDFNLQEAARWYLRAAEGG------YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG---KAQLEHGLGLFT 281 (336)
Q Consensus 211 ~g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~---~a~~~lg~~~~~ 281 (336)
.+|.++|+.+|+++.... .....+.++.++.. ..++++|..++.+..+.... .-.|..|.++..
T Consensus 280 ---~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~----~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 280 ---KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF----QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM 352 (468)
T ss_pred ---hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH----HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 789999999999886422 34567888888875 33999999999999886442 223677888888
Q ss_pred cCCH-------HHHHHHHHHHHH
Q 019734 282 EGEM-------MKAVVYLELATR 297 (336)
Q Consensus 282 ~~~~-------~~A~~~~~~A~~ 297 (336)
.++. ++|..+|+++-.
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHH
Confidence 8888 888888887754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.1 Score=42.27 Aligned_cols=104 Identities=13% Similarity=0.036 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC---------
Q 019734 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS--------- 136 (336)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~--------- 136 (336)
++++.+|. ...+.+.-+..+++.++..++ .++|+..|+.=. .....+|..+|++|++.+.
T Consensus 172 q~IMq~AW---RERnp~aRIkaA~eALei~pd--CAdAYILLAEEe------A~Ti~Eae~l~rqAvkAgE~~lg~s~~~ 240 (539)
T PF04184_consen 172 QEIMQKAW---RERNPQARIKAAKEALEINPD--CADAYILLAEEE------ASTIVEAEELLRQAVKAGEASLGKSQFL 240 (539)
T ss_pred HHHHHHHH---hcCCHHHHHHHHHHHHHhhhh--hhHHHhhccccc------ccCHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 33455443 566777777788899999877 888888777532 2357899999999875310
Q ss_pred ------------------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 019734 137 ------------------TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPAGQFNLGISYL 180 (336)
Q Consensus 137 ------------------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~ 180 (336)
..+...|+.+..+.|+.++|++.++..++. ++....++|-.+++
T Consensus 241 ~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL 306 (539)
T PF04184_consen 241 QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL 306 (539)
T ss_pred hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH
Confidence 123445666666677777777777766643 22334455544444
|
The molecular function of this protein is uncertain. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.11 E-value=1.1 Score=41.15 Aligned_cols=163 Identities=17% Similarity=0.087 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHH-------HHHHHHHHHHHHc---CCHHH
Q 019734 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL------GDPAGQFNLGISYLQ-------EEAVKLLYQASIA---GHVRA 199 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~~~~-------~~A~~~~~ka~~~---~~~~a 199 (336)
+++...++=..|...+|++..+.+....-.. ..+...+.+|.++.. ++|+..+..++.. .+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3455667777788889999999998876443 356667778888877 9999999997654 47899
Q ss_pred HHHHHHHHhcCC-----CCccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-cCCCCcccHHHHHHHH----HHHHHcCC
Q 019734 200 QYQLALCLHRGR-----GVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYS-FGEGLPLSHRQARKWM----KRAADCGH 268 (336)
Q Consensus 200 ~~~lg~~~~~g~-----g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~-~~~g~~~~~~~A~~~~----~~a~~~~~ 268 (336)
+..+|.+|..-+ ......++|+.||.++.+.. +.-.=.|++.++. .|.. ..+..+..+.- ....+.|.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~-~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHD-FETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCc-ccchHHHHHHHHHHHHHHHhhcc
Confidence 999999986422 22456899999999997653 2233334554443 3321 11222222222 11112221
Q ss_pred ---HHHH---HHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 269 ---GKAQ---LEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 269 ---~~a~---~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
..-+ -.+..+..-.||+++|.+++++++...
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 1112 233333444899999999999999875
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.01 Score=33.86 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
.+++.+|.+|...|++++|..+|+++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467889999999999999999999988754
|
... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.79 Score=38.53 Aligned_cols=168 Identities=17% Similarity=0.091 Sum_probs=110.2
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
.+++..-||..+.. .+|++.|.+.|....++ +..-+..+.|..++.+|+++-|..-+.+--+. .||---..|
T Consensus 98 m~~vfNyLG~Yl~~----a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL 173 (297)
T COG4785 98 MPEVFNYLGIYLTQ----AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL 173 (297)
T ss_pred cHHHHHHHHHHHHh----cccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence 68888889998888 69999999999999988 46788899999999999999999988887644 555333333
Q ss_pred HHHHHH---HHHHHHHHHHHHc------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH---------HCCCHHHHH
Q 019734 176 GISYLQ---EEAVKLLYQASIA------GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA---------EGGYVRAMY 237 (336)
Q Consensus 176 g~~~~~---~~A~~~~~ka~~~------~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~---------~~~~~~a~~ 237 (336)
-..-.. .+|..-+.+-.+. |-....+.||.+-.. ..++++. ...-+++++
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e------------~l~~~~~a~a~~n~~~Ae~LTEtyF 241 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE------------TLMERLKADATDNTSLAEHLTETYF 241 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH------------HHHHHHHhhccchHHHHHHHHHHHH
Confidence 222222 5555555433332 223344555554322 1122221 112467899
Q ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHcC------CHHHHHHHHHHhhccCCHHH
Q 019734 238 NTSLCYSFGEGLPLSHRQARKWMKRAADCG------HGKAQLEHGLGLFTEGEMMK 287 (336)
Q Consensus 238 ~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~~~~~~ 287 (336)
.||..|.. .| +..+|...|+.++..+ +-.+.+.|+.++-...+..+
T Consensus 242 YL~K~~l~-~G---~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~l~~ 293 (297)
T COG4785 242 YLGKYYLS-LG---DLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDDLAE 293 (297)
T ss_pred HHHHHHhc-cc---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccchhhh
Confidence 99999864 33 9999999999998742 23445666665555444443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.032 Score=51.84 Aligned_cols=126 Identities=21% Similarity=0.170 Sum_probs=91.3
Q ss_pred CChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH---cC--------CHHHHHHHHH
Q 019734 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA---RG--------STLAMVDAGL 145 (336)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~---~~--------~~~a~~~lg~ 145 (336)
+..++..+..--+.....+. +.+++++.-...+.- .||+.+|.+.+-..-- .| .-..+++||-
T Consensus 218 q~~~Lk~~krevK~vmn~a~--~s~~~l~LKsq~eY~----~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 218 QTRNLKLAKREVKHVMNIAQ--DSSMALLLKSQLEYA----HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred HHHHHHHHHHhhhhhhhhcC--CCcHHHHHHHHHHHH----hcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence 33444444333333333332 467777766666555 4799999998875421 12 1235689999
Q ss_pred HHhcCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHH
Q 019734 146 MYWEMDKKEAAISLYRQAAV--------------------LGDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRA 199 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~--------------------~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a 199 (336)
+++..+.+.-+..+|.+|+. ....+..|+.|..|+. ..|.+||.+++.. .+|..
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrl 371 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRL 371 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHH
Confidence 99999999999999999984 1245678999999998 9999999999886 68999
Q ss_pred HHHHHHHHh
Q 019734 200 QYQLALCLH 208 (336)
Q Consensus 200 ~~~lg~~~~ 208 (336)
|..|+.|+.
T Consensus 372 WLRlAEcCi 380 (696)
T KOG2471|consen 372 WLRLAECCI 380 (696)
T ss_pred HHHHHHHHH
Confidence 999999874
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.02 Score=32.61 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
.+++.+|.+|...|++++|+.+|+++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46777888888888888888888887753
|
... |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.088 Score=44.61 Aligned_cols=84 Identities=15% Similarity=0.030 Sum_probs=58.7
Q ss_pred CccCHHHHHHHHHHHHH-----C-C---CHHHHHHHHHHHHcCCCCccc-------HHHHHHHHHHHHHcCC--------
Q 019734 213 VDFNLQEAARWYLRAAE-----G-G---YVRAMYNTSLCYSFGEGLPLS-------HRQARKWMKRAADCGH-------- 268 (336)
Q Consensus 213 ~~~~~~~A~~~~~~a~~-----~-~---~~~a~~~lg~~~~~~~g~~~~-------~~~A~~~~~~a~~~~~-------- 268 (336)
...++++|+..|..|+- . . -+..+..++++|.. .| + ..+|+.+|+++.+..+
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~-~~---~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~ 164 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRD-LG---DEENEKRFLRKALEFYEEAYENEDFPIEGMDE 164 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-cC---CHHHHHHHHHHHHHHHHHHHHhCcCCCCCchH
Confidence 36778888888887742 1 1 14456778888843 32 4 3456666666655321
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHcCc
Q 019734 269 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 269 ~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~ 300 (336)
....+-+|.+..+.|++++|..||.+.+..+.
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 35568999999999999999999999998653
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.2 Score=42.49 Aligned_cols=89 Identities=18% Similarity=0.255 Sum_probs=63.3
Q ss_pred cCCHHHHHHHHHHHHHc----C-C----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Q 019734 118 RKNLDKALDSFLKGAAR----G-S----TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLL 188 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~----~-~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~A~~~~ 188 (336)
..++++|++-|..|+-. + . +..+..++.+|...++.+....++++|+ ..|
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al---------------------~~y 148 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKAL---------------------EFY 148 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH---------------------HHH
Confidence 67899999999888643 1 1 3456778888888888666666665554 556
Q ss_pred HHHHHcC--------CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC
Q 019734 189 YQASIAG--------HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 231 (336)
Q Consensus 189 ~ka~~~~--------~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~ 231 (336)
++|.+.. ....+|.+|.++.. .|++++|..||.+.+..+
T Consensus 149 ~~a~~~e~~~~~~~~~~~l~YLigeL~rr----lg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 149 EEAYENEDFPIEGMDEATLLYLIGELNRR----LGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHhCcCCCCCchHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHcCC
Confidence 6666432 24567888888887 788888888888887553
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.31 Score=43.17 Aligned_cols=110 Identities=14% Similarity=-0.053 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHH
Q 019734 182 EEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQAR 257 (336)
Q Consensus 182 ~~A~~~~~ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~ 257 (336)
+.|...|++|.+.+ ....+...|.+-.. +.+|.+.|...|++++.. .+...+......+.. . .+.+.|.
T Consensus 18 ~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~---~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~---~d~~~aR 90 (280)
T PF05843_consen 18 EAARKVFKRARKDKRCTYHVYVAYALMEYY---CNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-L---NDINNAR 90 (280)
T ss_dssp HHHHHHHHHHHCCCCS-THHHHHHHHHHHH---TCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-T---T-HHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-h---CcHHHHH
Confidence 55555566555432 23444445544221 024455566666655443 333333333333322 1 1555556
Q ss_pred HHHHHHHHc-CCH----HHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 258 KWMKRAADC-GHG----KAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 258 ~~~~~a~~~-~~~----~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
..|++++.. ... ..+...-..-...|+.+.....++++.+.
T Consensus 91 ~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 91 ALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666655543 111 11222222223345555555555555443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.27 E-value=1.7 Score=37.41 Aligned_cols=85 Identities=12% Similarity=0.002 Sum_probs=69.4
Q ss_pred CCChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C---
Q 019734 62 ASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--G--- 135 (336)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~--- 135 (336)
...+..+-.++...++.|++.+|+..+.......|-.+ ...++..++.++.. .+++++|+...++-+.+ +
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk----~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK----NGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCCC
Confidence 44556778999999999999999999988888776432 36789999999988 58999999999999987 2
Q ss_pred CHHHHHHHHHHHhcC
Q 019734 136 STLAMVDAGLMYWEM 150 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~ 150 (336)
-..+++..|..++..
T Consensus 107 ~dY~~YlkgLs~~~~ 121 (254)
T COG4105 107 ADYAYYLKGLSYFFQ 121 (254)
T ss_pred hhHHHHHHHHHHhcc
Confidence 346778888887765
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.028 Score=31.62 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
++++++|.++...|++++|+..|++.++.-
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 467888888888888888888888877643
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.03 Score=31.48 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (336)
++++.+|.++...|++++|+..|++.++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4677888888888888888888887765
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.88 Score=39.39 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=82.5
Q ss_pred cCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----c----CCHHHHHHHHHHHHH----H
Q 019734 118 RKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAV----L----GDPAGQFNLGISYLQ----E 182 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~----~~~~a~~~Lg~~~~~----~ 182 (336)
.+.+.-++..+.+.++.. .+.-...||.+-.+-||.+.|..+|++.-+ . +......+.+.+|.. .
T Consensus 190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 367777788888887764 566667788888888888888888874421 1 233445555666655 6
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHc
Q 019734 183 EAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY-----VRAMYNTSLCYSF 245 (336)
Q Consensus 183 ~A~~~~~ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~ 245 (336)
.|...|.+.+..+ ++.+..+-+.|... .++...|++..+.+.+... ....++|-.+|..
T Consensus 270 ~a~r~~~~i~~~D~~~~~a~NnKALcllY----lg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL 335 (366)
T KOG2796|consen 270 EAHRFFTEILRMDPRNAVANNNKALCLLY----LGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYEL 335 (366)
T ss_pred HHHHHHhhccccCCCchhhhchHHHHHHH----HHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHH
Confidence 6666776676554 56677777777776 7788888888888876532 2234446665543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.067 Score=31.81 Aligned_cols=29 Identities=21% Similarity=0.092 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
.++.+||.+|...|++++|..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46789999999999999999999999863
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.69 E-value=2.9 Score=36.98 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.4
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 273 LEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 273 ~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
.+-|...++.++|++|..||+.++.
T Consensus 250 W~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 250 WNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 5667788889999999999998874
|
It is also involved in sporulation []. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.095 Score=44.40 Aligned_cols=81 Identities=20% Similarity=0.051 Sum_probs=63.1
Q ss_pred ccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHH
Q 019734 214 DFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAV 289 (336)
Q Consensus 214 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~ 289 (336)
.+.+..|+..|.+|+-. ..+.-+.+-+.||++. ++++....--++|++. +...+.+.||.+......+++|+
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~----~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKL----KHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHh----hhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 67888899999888654 3445566888888763 3788888888888875 44677889999888889999999
Q ss_pred HHHHHHHHc
Q 019734 290 VYLELATRA 298 (336)
Q Consensus 290 ~~~~~A~~~ 298 (336)
..+.+|..+
T Consensus 99 ~~Lqra~sl 107 (284)
T KOG4642|consen 99 KVLQRAYSL 107 (284)
T ss_pred HHHHHHHHH
Confidence 999998553
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.099 Score=31.04 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019734 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (336)
..++.+||.+|...|++++|+.+++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678899999999999999999998874
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.59 Score=38.74 Aligned_cols=79 Identities=14% Similarity=0.087 Sum_probs=56.6
Q ss_pred cCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH----HHH
Q 019734 118 RKNLDKALDSFLKGAARG-------STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYLQ----EEA 184 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~----~~A 184 (336)
.+++++|..-|..|+..- -...+.+.|.+....+..+.||.-..+|++.+ +..|+...+.+|.. +.|
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eea 187 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEA 187 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHH
Confidence 468888888888887752 12344567777777888888888888888774 35666667777766 888
Q ss_pred HHHHHHHHHcCC
Q 019734 185 VKLLYQASIAGH 196 (336)
Q Consensus 185 ~~~~~ka~~~~~ 196 (336)
++-|++.++.+.
T Consensus 188 leDyKki~E~dP 199 (271)
T KOG4234|consen 188 LEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHhCc
Confidence 888888877653
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.34 E-value=1.2 Score=38.65 Aligned_cols=140 Identities=11% Similarity=0.050 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH------HC--CCHHHHHHHHHHHHcCCCCc
Q 019734 182 EEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA------EG--GYVRAMYNTSLCYSFGEGLP 250 (336)
Q Consensus 182 ~~A~~~~~ka~~~~---~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~------~~--~~~~a~~~lg~~~~~~~g~~ 250 (336)
.-.+..+.+.++.+ ++.-...||.+-.+ .||.+.|..+|++.- +. +.....-+.+.+|. +.
T Consensus 194 ~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ----~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l----g~ 265 (366)
T KOG2796|consen 194 VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ----IGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL----GQ 265 (366)
T ss_pred hhhHHHHHHHHHhCCcccHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee----cc
Confidence 55566666666643 45566677777666 678888888887431 11 22333344444553 24
Q ss_pred ccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHH-----HHHHHHHHHhhcChhcHHHHH
Q 019734 251 LSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA-----ADHVKNVILQQLSATSRDRAM 323 (336)
Q Consensus 251 ~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~-----a~~~~~~~~~~~~~~~~~~a~ 323 (336)
+|+..|...|.+.+..++ +.+-++-+.|..-.|+..+|++..+.++...+.. ...++-.+++ +.-....+.+
T Consensus 266 nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyE-L~Ys~~~~~k 344 (366)
T KOG2796|consen 266 NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYE-LEYSRSMQKK 344 (366)
T ss_pred cchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHH-HHhhhhhhHH
Confidence 578888888877776544 3444566666666788888888888887764322 2233444433 2333344444
Q ss_pred HHHHHhh
Q 019734 324 LVVDSWR 330 (336)
Q Consensus 324 ~~~~~~~ 330 (336)
....+|+
T Consensus 345 ~~l~~~i 351 (366)
T KOG2796|consen 345 QALLEAV 351 (366)
T ss_pred HHHHHHH
Confidence 5555554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.3 Score=43.68 Aligned_cols=93 Identities=18% Similarity=-0.017 Sum_probs=73.3
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CHHHHHHHH
Q 019734 201 YQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHG 276 (336)
Q Consensus 201 ~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 276 (336)
-.-|+-|.. .+.|++|+.+|.+++. +.++..+.+.+..|++ .+.+..|..--..|+.++ +..++..-|
T Consensus 101 KE~GN~yFK----QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 101 KERGNTYFK----QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAEEDCEAAIALDKLYVKAYSRRM 172 (536)
T ss_pred HHhhhhhhh----ccchhHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 445666666 7899999999999865 4577788888888986 347888888878777764 466777778
Q ss_pred HHhhccCCHHHHHHHHHHHHHcCcH
Q 019734 277 LGLFTEGEMMKAVVYLELATRAGET 301 (336)
Q Consensus 277 ~~~~~~~~~~~A~~~~~~A~~~~~~ 301 (336)
..-...|+..+|.+-++.++++.+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 8888899999999999999987644
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.23 E-value=1.1 Score=36.88 Aligned_cols=94 Identities=22% Similarity=0.102 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CC----HHHHHHHHHHHHH----HHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL-GD----PAGQFNLGISYLQ----EEAVKLLYQASIAG-HVRAQYQLALCL 207 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~----~~a~~~Lg~~~~~----~~A~~~~~ka~~~~-~~~a~~~lg~~~ 207 (336)
.+...++..+...+++++|+..++.++.. .| +-+-..|+.+... ++|+..+....+.+ .+.....-|+++
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDil 169 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHH
Confidence 44567778888888888888888887744 22 2344667777766 66666666555444 344566678888
Q ss_pred hcCCCCccCHHHHHHHHHHHHHCCCHHH
Q 019734 208 HRGRGVDFNLQEAARWYLRAAEGGYVRA 235 (336)
Q Consensus 208 ~~g~g~~~~~~~A~~~~~~a~~~~~~~a 235 (336)
.. .+|-++|+..|+++++.+...+
T Consensus 170 l~----kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 170 LA----KGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HH----cCchHHHHHHHHHHHHccCChH
Confidence 87 7889999999999987754333
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.6 Score=41.36 Aligned_cols=75 Identities=16% Similarity=0.128 Sum_probs=32.6
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC-CCHH---HHHHHHHHHHcCCCCcccHHHHH
Q 019734 184 AVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVR---AMYNTSLCYSFGEGLPLSHRQAR 257 (336)
Q Consensus 184 A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~-~~~~---a~~~lg~~~~~~~g~~~~~~~A~ 257 (336)
|...|+.+++. .+...+......+.. .+|.+.|...|++++.. .... ..+..=.-|....| +.+...
T Consensus 55 A~~Ife~glk~f~~~~~~~~~Y~~~l~~----~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G---dl~~v~ 127 (280)
T PF05843_consen 55 ARKIFERGLKKFPSDPDFWLEYLDFLIK----LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG---DLESVR 127 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH----TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC---CHHHHH
Confidence 44444444432 334444444444444 45666677777766543 1111 11111111222233 666666
Q ss_pred HHHHHHHH
Q 019734 258 KWMKRAAD 265 (336)
Q Consensus 258 ~~~~~a~~ 265 (336)
..++++.+
T Consensus 128 ~v~~R~~~ 135 (280)
T PF05843_consen 128 KVEKRAEE 135 (280)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666655
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.078 Score=28.65 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
.+++++|.++...+++++|..+|++++...
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 456788888888889999998888887653
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.66 E-value=2.1 Score=35.39 Aligned_cols=87 Identities=15% Similarity=0.039 Sum_probs=61.5
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCC-HHHHHHHHHH
Q 019734 173 FNLGISYLQ----EEAVKLLYQASIAG-----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY-VRAMYNTSLC 242 (336)
Q Consensus 173 ~~Lg~~~~~----~~A~~~~~ka~~~~-----~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~ 242 (336)
..++..+.+ ++|+..++.++... .+.+-..|+.+... .+.+++|...+....+.+. +...-..|.+
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q----~~k~D~AL~~L~t~~~~~w~~~~~elrGDi 168 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ----QKKADAALKTLDTIKEESWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH----hhhHHHHHHHHhccccccHHHHHHHHhhhH
Confidence 445555555 88888888887542 23456788888887 7889999888877654443 3345567888
Q ss_pred HHcCCCCcccHHHHHHHHHHHHHcC
Q 019734 243 YSFGEGLPLSHRQARKWMKRAADCG 267 (336)
Q Consensus 243 ~~~~~g~~~~~~~A~~~~~~a~~~~ 267 (336)
+.. .++.++|+..|++++..+
T Consensus 169 ll~----kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLA----KGDKQEARAAYEKALESD 189 (207)
T ss_pred HHH----cCchHHHHHHHHHHHHcc
Confidence 865 338999999999998874
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.35 Score=41.14 Aligned_cols=74 Identities=24% Similarity=0.270 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHH
Q 019734 119 KNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQ 190 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~k 190 (336)
+.+..|+.+|.+|+..+ .+.-+.+-+.+|+...+++....-.++|++. +.+.++|.||.+.+. .+|+..+++
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 45555555555555543 2233345555555555555555555555544 345555555555555 555555555
Q ss_pred HH
Q 019734 191 AS 192 (336)
Q Consensus 191 a~ 192 (336)
|.
T Consensus 104 a~ 105 (284)
T KOG4642|consen 104 AY 105 (284)
T ss_pred HH
Confidence 53
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.37 Score=43.13 Aligned_cols=93 Identities=9% Similarity=-0.033 Sum_probs=65.5
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (336)
+-.++...|.+|.|++|+++|-......|. ++..+.+.+.+|+. .+.+..|..-...|+.++ ...|+...|.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~--NpV~~~NRA~AYlk----~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPH--NPVYHINRALAYLK----QKSFAQAEEDCEAAIALDKLYVKAYSRRMQ 173 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCC--CccchhhHHHHHHH----HHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 345666677888888888777777666554 66677777777777 467777777777777664 3556666676
Q ss_pred HHhcCCCHHHHHHHHHHHHHc
Q 019734 146 MYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~ 166 (336)
.-...|...+|.+-++.++.+
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHhh
Confidence 666777777777777777654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=93.51 E-value=7.7 Score=38.63 Aligned_cols=48 Identities=21% Similarity=0.106 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 252 SHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 252 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
.++-|...-+.+++...+..+..++..+.+.|++++|-+.|-.|+..+
T Consensus 978 afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 978 AFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred chhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 455555555666555556677888888888999999999999988754
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.30 E-value=2.2 Score=36.57 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAV----------LGDPAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCL 207 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~----------~~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~ 207 (336)
.++.+-|.-++..|++.+|...|+.|+- +++++ |..| +.-...-+.|+..|+
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~e-W~eL-----------------dk~~tpLllNy~QC~ 240 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPE-WLEL-----------------DKMITPLLLNYCQCL 240 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChH-HHHH-----------------HHhhhHHHHhHHHHH
Confidence 4667778888888999999999988862 12221 1111 111233455566666
Q ss_pred hcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC
Q 019734 208 HRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 268 (336)
Q Consensus 208 ~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~ 268 (336)
.. .+++-++++.....+. .++..|++.-|.++..-. +..+|..-|.++++.+.
T Consensus 241 L~----~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~W----n~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 241 LK----KEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVW----NEAEAKADLQKVLELDP 295 (329)
T ss_pred hh----HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhc----CHHHHHHHHHHHHhcCh
Confidence 55 5566666665555543 355666666666554334 55666666666655443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.29 E-value=7.6 Score=38.41 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=55.0
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----------CCCHHHHHHH
Q 019734 90 SWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----------MDKKEAAISL 159 (336)
Q Consensus 90 ~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~----------~~~~~~A~~~ 159 (336)
++.+. .+++..|..|+..-.. +-+++-|...|-++..-.-..-.-.|+.++.+ -|++++|.+.
T Consensus 684 qfiEd---nPHprLWrllAe~Al~----Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 684 QFIED---NPHPRLWRLLAEYALF----KLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred HHHhc---CCchHHHHHHHHHHHH----HHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 44444 6788888888887766 45677777777665432111112223333322 2566666666
Q ss_pred HHHH------H----------------Hc--------CCHHHHHHHHHHHHH----HHHHHHHHHH
Q 019734 160 YRQA------A----------------VL--------GDPAGQFNLGISYLQ----EEAVKLLYQA 191 (336)
Q Consensus 160 ~~~a------~----------------~~--------~~~~a~~~Lg~~~~~----~~A~~~~~ka 191 (336)
|..+ + .. +-..|+.++|..+.. ++|.++|.+.
T Consensus 757 yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 757 YLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5432 1 11 224577788887776 8888888765
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.27 E-value=7.7 Score=36.84 Aligned_cols=133 Identities=18% Similarity=0.112 Sum_probs=79.8
Q ss_pred HhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH--HHHHHHHHHHHHcCCH-----HHHHHHHHHHhcCCCCccCH
Q 019734 147 YWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ--EEAVKLLYQASIAGHV-----RAQYQLALCLHRGRGVDFNL 217 (336)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~--~~A~~~~~ka~~~~~~-----~a~~~lg~~~~~g~g~~~~~ 217 (336)
-++..+++.-++.-++|++. +.+.|+..|+.-... .+|..+|+|+++.+.. .....-|..+..
T Consensus 178 AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~-------- 249 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA-------- 249 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh--------
Confidence 34566777777777777655 456777666654333 7888888887764311 111111111110
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CCHHHHHHHHHHhhccCCHHHHHHHHH
Q 019734 218 QEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GHGKAQLEHGLGLFTEGEMMKAVVYLE 293 (336)
Q Consensus 218 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~ 293 (336)
+..+- ..-..-+...|+.|..+ .| ..++|++.++..++. ++...+++|-.++.+.+.+.++...+.
T Consensus 250 -----~~~Rd-t~~~~y~KrRLAmCark-lG---r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 250 -----WHRRD-TNVLVYAKRRLAMCARK-LG---RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred -----hhccc-cchhhhhHHHHHHHHHH-hC---ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00000 01124455678888754 33 888898888888763 234567888888888888888888888
Q ss_pred HHHH
Q 019734 294 LATR 297 (336)
Q Consensus 294 ~A~~ 297 (336)
+--+
T Consensus 320 kYdD 323 (539)
T PF04184_consen 320 KYDD 323 (539)
T ss_pred Hhcc
Confidence 7543
|
The molecular function of this protein is uncertain. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.20 E-value=8.2 Score=36.99 Aligned_cols=182 Identities=12% Similarity=-0.010 Sum_probs=101.5
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhcCCC--------------HHHHHHHHHHHHHcCC---HHHHHHHHHHHHH------
Q 019734 127 SFLKGAAR--GSTLAMVDAGLMYWEMDK--------------KEAAISLYRQAAVLGD---PAGQFNLGISYLQ------ 181 (336)
Q Consensus 127 ~~~~A~~~--~~~~a~~~lg~~~~~~~~--------------~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~------ 181 (336)
.|++++.. -+++.|+..+..+...++ .+++...|+++++.-. ...++.+++.-..
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~ 346 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNK 346 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccch
Confidence 35555543 367777665555544444 7788888888876522 2222222222211
Q ss_pred -HHHHHHHHHHHHc---CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHH
Q 019734 182 -EEAVKLLYQASIA---GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQAR 257 (336)
Q Consensus 182 -~~A~~~~~ka~~~---~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~ 257 (336)
++-...++++... +.+-++..+=..-.. ..=...|+..|.+|-+.+...-+..++.++..-. ..+|..-|.
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR----~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~Af 421 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRR----AEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAF 421 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHH----hhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHH
Confidence 4455556665443 233344444333333 2235778888888866543332222222222211 245899999
Q ss_pred HHHHHHHHc-CC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHc--CcHHHHHHHHHHHhh
Q 019734 258 KWMKRAADC-GH-GKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQ 313 (336)
Q Consensus 258 ~~~~~a~~~-~~-~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~~~~~~~~ 313 (336)
..|+..+.. ++ +.--+..-..+...++-..+...|++++.. ....+......++..
T Consensus 422 rIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 422 RIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 999998875 33 333344444566688888999999999876 444555555444443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.11 E-value=5.6 Score=35.10 Aligned_cols=109 Identities=17% Similarity=0.029 Sum_probs=70.3
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHH--H----HHHHHHH
Q 019734 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAV-LGDPAGQFNLGISYL--Q----EEAVKLL 188 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~~~--~----~~A~~~~ 188 (336)
.+++.+|...|..+... .+.++...|+.+|...|+.+.|...+...-. ..+..++-..+.+-. + .+....-
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 46788888888887765 4677888888888888888888887776432 222222221121111 1 2222222
Q ss_pred HHH-HHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC
Q 019734 189 YQA-SIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 230 (336)
Q Consensus 189 ~ka-~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~ 230 (336)
++. .+.++.++-+.|+..+.. .++.+.|.+.+-..+..
T Consensus 227 ~~~aadPdd~~aa~~lA~~~~~----~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 227 RRLAADPDDVEAALALADQLHL----VGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 333 345789999999999887 78999999887666543
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.14 Score=27.52 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
.+++.+|.++...+++++|+.+|+++++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45677888888888888888888887753
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.54 E-value=4.2 Score=33.91 Aligned_cols=86 Identities=19% Similarity=0.066 Sum_probs=54.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHH----HHHHHHHHHHHHcC--CHHHHHHHHHHHh
Q 019734 142 DAGLMYWEMDKKEAAISLYRQAAVLGD-------PAGQFNLGISYLQ----EEAVKLLYQASIAG--HVRAQYQLALCLH 208 (336)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~Lg~~~~~----~~A~~~~~ka~~~~--~~~a~~~lg~~~~ 208 (336)
.=|.-++..|++++|..-|..|++.=. ...+.+-|.++.. +.|+.-..||++++ +-.|...-+.+|.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 346677889999999999999987521 1223333444433 66666666776664 4456666666666
Q ss_pred cCCCCccCHHHHHHHHHHHHHCC
Q 019734 209 RGRGVDFNLQEAARWYLRAAEGG 231 (336)
Q Consensus 209 ~g~g~~~~~~~A~~~~~~a~~~~ 231 (336)
. ...++.|+.-|++..+.+
T Consensus 180 k----~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 180 K----MEKYEEALEDYKKILESD 198 (271)
T ss_pred h----hhhHHHHHHHHHHHHHhC
Confidence 5 556666666666665443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.7 Score=28.24 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=26.3
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHcCcHH
Q 019734 272 QLEHGLGLFTEGEMMKAVVYLELATRAGETA 302 (336)
Q Consensus 272 ~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 302 (336)
.++|+..|.+.||.+.|...++..+..++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~~~ 32 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEGDEA 32 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcCCHH
Confidence 3688999999999999999999988766543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.29 E-value=4.6 Score=36.59 Aligned_cols=168 Identities=15% Similarity=0.068 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CC--H
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL---GD--P 169 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~--~ 169 (336)
...+..++.+... .|.++.|...+.++...+ .+...+.-+.+++..|+..+|+..++..++. +. .
T Consensus 146 ~~~~l~~a~~aRk----~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 146 AETWLKFAKLARK----AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred HHHHHHHHHHHHH----CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 3455555665555 578888888888887755 6788888889999999999999988887762 11 1
Q ss_pred HHHHHHHHHH--HH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CCCccCHHHHHHHHHHHHHC--CCHHHHHHH
Q 019734 170 AGQFNLGISY--LQ----EEAVKLLYQASIAGHVRAQYQLALCLHRG--RGVDFNLQEAARWYLRAAEG--GYVRAMYNT 239 (336)
Q Consensus 170 ~a~~~Lg~~~--~~----~~A~~~~~ka~~~~~~~a~~~lg~~~~~g--~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l 239 (336)
.....+...+ .. ........ ......+++.+|.....- .-...+.+.+...|+.+++. ....+++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKES---KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred ccHHHHhhccccccccccccchhhhh---HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 1111111100 00 00000000 001235566666665541 01147889999999999765 456788888
Q ss_pred HHHHHcCCCC-------------cccHHHHHHHHHHHHHcCCHHHHHHH
Q 019734 240 SLCYSFGEGL-------------PLSHRQARKWMKRAADCGHGKAQLEH 275 (336)
Q Consensus 240 g~~~~~~~g~-------------~~~~~~A~~~~~~a~~~~~~~a~~~l 275 (336)
|..+..-... ..-...|+..|-+++..|+....-.+
T Consensus 299 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~~~~~ 347 (352)
T PF02259_consen 299 ALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYVRQDL 347 (352)
T ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCchHHHh
Confidence 8877543110 11235699999999998776544433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.64 Score=29.71 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHc--CcHHHHHHHHHHHhhc
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQL 314 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~~~~~~~~~ 314 (336)
+..|.|+..+++.|++++|..+.+.+++. ++..+......+...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 34688999999999999999999999876 4667777766665544
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.2 Score=26.65 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYR 161 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~ 161 (336)
.+.+.||.++...||+++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355667777777777777776654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=91.87 E-value=1.4 Score=34.06 Aligned_cols=85 Identities=11% Similarity=0.116 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC----HHHHHHHHHHhhccCCHHHHHHHHHHHHHc--CcHHHH
Q 019734 231 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH----GKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAAD 304 (336)
Q Consensus 231 ~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~ 304 (336)
-.....+++++++-... -..|.++.+..++..+...+ -+..|.|+..+++.++|+++..+....++. ++..+.
T Consensus 30 ~s~~s~f~lAwaLV~S~-~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSR-DTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred chHHHHHHHHHHHHccc-chHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 34677889998885543 35688899999999886333 344588999999999999999999999875 567777
Q ss_pred HHHHHHHhhcCh
Q 019734 305 HVKNVILQQLSA 316 (336)
Q Consensus 305 ~~~~~~~~~~~~ 316 (336)
.....+...++.
T Consensus 109 ~Lk~~ied~itk 120 (149)
T KOG3364|consen 109 ELKETIEDKITK 120 (149)
T ss_pred HHHHHHHHHHhh
Confidence 777777666544
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.48 Score=41.79 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HcCCHHHHHH
Q 019734 120 NLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAA--VLGDPAGQFN 174 (336)
Q Consensus 120 ~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~ 174 (336)
+.++|...|+-|+.+ .+++++..+|.+....++.-+|-.+|-+|+ .+++.+|+.+
T Consensus 131 k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 131 KLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 555555555555544 355555555555555555555555555543 3345554444
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.22 Score=26.50 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHH
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVYLE 293 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~~~ 293 (336)
.+.++||.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467888999999999999988875
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.70 E-value=9 Score=33.88 Aligned_cols=68 Identities=16% Similarity=0.074 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHH
Q 019734 122 DKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQ 190 (336)
Q Consensus 122 ~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~k 190 (336)
+.-.+|+.+.+.. ..+..+.-+.-....+++.+|...|..+.+. ++.++...|+.+|.. +.|...+..
T Consensus 120 sqlr~~ld~~~~~-~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 120 SQLRQFLDKVLPA-EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHHHHHHhcCh-HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 3445555555443 2333444555666789999999999999865 678899999999987 556666654
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.89 Score=37.77 Aligned_cols=60 Identities=22% Similarity=0.181 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---C---CHHHHHHHHHHHHH
Q 019734 121 LDKALDSFLKGAAR---GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL---G---DPAGQFNLGISYLQ 181 (336)
Q Consensus 121 ~~~A~~~~~~A~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~---~~~a~~~Lg~~~~~ 181 (336)
.+.|..-|.++-.. .+++.++.||..|. ..|.++++.+|.++++. + +++.+..|+.+|..
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 34555555544332 35666666666553 55666666666666543 1 45556666666654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=90.95 E-value=1.8 Score=33.95 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 102 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
.+...++..+.. .+++++|+.++++++... +..++..+-.+|...|+..+|+..|++..
T Consensus 63 ~~~~~l~~~~~~----~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLE----AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHH----TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344555555555 467777777777777663 56677777777777777777777777654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.84 Score=40.35 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=61.3
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (336)
+..+.....+|+.++|..++...+..+|. +++++..+|..... .+++-+|-.+|-+|+.. ++.+|+.+..+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~--~p~~L~e~G~f~E~----~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPT--NPQILIEMGQFREM----HNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCC--CHHHHHHHhHHHHh----hhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 56666778999999999999999999988 89999999999888 58999999999999865 78888877553
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=90.57 E-value=6.9 Score=30.51 Aligned_cols=62 Identities=18% Similarity=0.059 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 232 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 232 ~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
...+...++..+.. .+++++|+.++++++.. -+..++..|-.+|...|+..+|...|++..+
T Consensus 61 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 61 YLDALERLAEALLE----AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34566677776654 33999999999999986 4567888999999999999999999999865
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.55 E-value=12 Score=33.12 Aligned_cols=63 Identities=11% Similarity=-0.006 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019734 200 QYQLALCLHRGRGVDFNLQEAARWYLRAA-EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 266 (336)
Q Consensus 200 ~~~lg~~~~~g~g~~~~~~~A~~~~~~a~-~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~ 266 (336)
...|+.+|.. .+.....++|....+.+- +-++....+.|..-...+ ..+.+.+.+.+.+.+..
T Consensus 87 L~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~---~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 87 LRLLANAYLE-WDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK---SFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc---cCChhHHHHHHHHHHHh
Confidence 4455555543 222334444555444442 223433333333333332 22566666666665553
|
It is also involved in sporulation []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.53 E-value=16 Score=35.10 Aligned_cols=145 Identities=12% Similarity=0.012 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCcccHHH
Q 019734 182 EEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG---GYVRAMYNTSLCYSFGEGLPLSHRQ 255 (336)
Q Consensus 182 ~~A~~~~~ka~~~~---~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~~~g~~~~~~~ 255 (336)
+++..+|+++++.- +.-.++.++..-+.-.++. .+++--..|++.... ...-++..+=....+.. -.+.
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n-~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~e----Glka 384 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDN-KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAE----GLKA 384 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccc-hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhh----hHHH
Confidence 78889999887752 2233334443333211212 466777778777543 23333333333333334 4778
Q ss_pred HHHHHHHHHHcCCHH--HH--HHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhc
Q 019734 256 ARKWMKRAADCGHGK--AQ--LEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRA 331 (336)
Q Consensus 256 A~~~~~~a~~~~~~~--a~--~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 331 (336)
|...|.+|-+.+... .+ ..+- -|+..+|.+-|...|+.++..-.....+.+..+.....-++...++.++....+
T Consensus 385 aR~iF~kaR~~~r~~hhVfVa~A~m-Ey~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 385 ARKIFKKAREDKRTRHHVFVAAALM-EYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHHHHhhccCCcchhhHHHHHH-HHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 899999987753322 22 2222 366799999999999999986333333333322222222333445555555554
Q ss_pred C
Q 019734 332 M 332 (336)
Q Consensus 332 ~ 332 (336)
.
T Consensus 464 s 464 (656)
T KOG1914|consen 464 S 464 (656)
T ss_pred c
Confidence 3
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.10 E-value=3.1 Score=34.66 Aligned_cols=85 Identities=20% Similarity=0.146 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC------CCHHHHH
Q 019734 167 GDPAGQFNLGISYLQEEAVKLLYQASI---AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG------GYVRAMY 237 (336)
Q Consensus 167 ~~~~a~~~Lg~~~~~~~A~~~~~ka~~---~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~ 237 (336)
.+|...|.+=.-+-.+.|..-|.++-. .++++.++.||..|.. .|..+++..|.++++. -+++...
T Consensus 108 ~dP~llYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k-----rD~~Kt~~ll~~~L~l~~~~~~~n~eil~ 182 (203)
T PF11207_consen 108 QDPYLLYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYTK-----RDPEKTIQLLLRALELSNPDDNFNPEILK 182 (203)
T ss_pred CCccHHHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhcCCCCCCCHHHHH
Confidence 567665543222222788888877754 3578889999999874 7899999999998764 2578888
Q ss_pred HHHHHHHcCCCCcccHHHHHHHH
Q 019734 238 NTSLCYSFGEGLPLSHRQARKWM 260 (336)
Q Consensus 238 ~lg~~~~~~~g~~~~~~~A~~~~ 260 (336)
.|+.+|.. .+++++|--|.
T Consensus 183 sLas~~~~----~~~~e~AYiwa 201 (203)
T PF11207_consen 183 SLASIYQK----LKNYEQAYIWA 201 (203)
T ss_pred HHHHHHHH----hcchhhhhhhe
Confidence 89988865 33888887663
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.77 E-value=8.6 Score=34.79 Aligned_cols=163 Identities=13% Similarity=-0.070 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHH----HHHHHHHHHHHHc---CC--HHHH
Q 019734 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG------DPAGQFNLGISYLQ----EEAVKLLYQASIA---GH--VRAQ 200 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~~~~----~~A~~~~~ka~~~---~~--~~a~ 200 (336)
....+..++.+....|.++.|...+.++...+ .+...+.-+.++.. .+|+..++..++. .. ....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34567788888888999999999999988755 66777766776666 7888887777652 11 1111
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--CCCcccHHHHHHHHHHHHHcC--CHHHHHHHH
Q 019734 201 YQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFG--EGLPLSHRQARKWMKRAADCG--HGKAQLEHG 276 (336)
Q Consensus 201 ~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~--~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 276 (336)
..+...+.....+... ....... ......++..+|.+.... .-...+.+++...|+.++... ...+++.+|
T Consensus 225 ~~~~~~~~~~~~~~~~--~~~~~~~---~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 225 AELKSGLLESLEVISS--TNLDKES---KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred HHHhhccccccccccc--cchhhhh---HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 1111110000000000 0000000 011235555566655442 001348999999999999863 456777777
Q ss_pred HHhhccC-----------------CHHHHHHHHHHHHHcCcHHH
Q 019734 277 LGLFTEG-----------------EMMKAVVYLELATRAGETAA 303 (336)
Q Consensus 277 ~~~~~~~-----------------~~~~A~~~~~~A~~~~~~~a 303 (336)
..+...= -...|+..|-+++..|+...
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~ 343 (352)
T PF02259_consen 300 LFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYV 343 (352)
T ss_pred HHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCch
Confidence 7665421 12458889999999887743
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.75 E-value=12 Score=32.21 Aligned_cols=99 Identities=15% Similarity=0.002 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHHHHH----------CC----------CHHHHHHHHHHHHcCCCCcccHHHHHH
Q 019734 199 AQYQLALCLHRGRGVDFNLQEAARWYLRAAE----------GG----------YVRAMYNTSLCYSFGEGLPLSHRQARK 258 (336)
Q Consensus 199 a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~----------~~----------~~~a~~~lg~~~~~~~g~~~~~~~A~~ 258 (336)
+...-|+-+.. .+++++|...|+.|+- ++ ...-+.|...|++. ..++-++++
T Consensus 180 ~l~q~GN~lfk----~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~----~~e~yevle 251 (329)
T KOG0545|consen 180 VLHQEGNRLFK----LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK----KEEYYEVLE 251 (329)
T ss_pred HHHHhhhhhhh----hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh----HHHHHHHHH
Confidence 34444444444 6788888888877742 22 34557788888875 348888888
Q ss_pred HHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHH
Q 019734 259 WMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH 305 (336)
Q Consensus 259 ~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~ 305 (336)
.-...+.. ++..++|.-|.++...=+.++|..-|.+++++.+.-+..
T Consensus 252 h~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 252 HCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 88888764 788999999999988889999999999999998765443
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=89.68 E-value=18 Score=34.01 Aligned_cols=143 Identities=18% Similarity=0.067 Sum_probs=82.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH-------------------------HHHHHHHHHHHH
Q 019734 140 MVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQ-------------------------EEAVKLLYQASI 193 (336)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~-------------------------~~A~~~~~ka~~ 193 (336)
...||.+++..+|++.|...|+.+..- .+-.++..+|-++.- +.|...|.++..
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~ 290 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL 290 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence 456899999999999999999987643 444555555544433 445555555311
Q ss_pred ----c--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH------CC---CHHHHHHHHHHH--HcCCCC---cccH
Q 019734 194 ----A--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE------GG---YVRAMYNTSLCY--SFGEGL---PLSH 253 (336)
Q Consensus 194 ----~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~------~~---~~~a~~~lg~~~--~~~~g~---~~~~ 253 (336)
. .-.++....+.++.. .+.+.+|..++-+... .+ .+..+-.++.|| ...... ..+.
T Consensus 291 ~~~~~~~~a~R~~ll~~ell~~----~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~ 366 (414)
T PF12739_consen 291 PRCSLPYYALRCALLLAELLKS----RGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRF 366 (414)
T ss_pred cccccccchHHHHHHHHHHHHh----cCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhh
Confidence 1 123445555555554 4555555555544422 22 344455666666 433111 1123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 254 RQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 254 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
.++..|+-.| |.-|...|....|..+|..|...
T Consensus 367 RK~af~~vLA------------g~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 367 RKYAFHMVLA------------GHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred HHHHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHH
Confidence 4444444333 35577889999999999998764
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=89.27 E-value=0.98 Score=27.59 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 019734 140 MVDAGLMYWEMDKKEAAISLYRQAAVLGDPAG 171 (336)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a 171 (336)
.++|+..|...||.+.|+..++..+..++...
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~~~q 33 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEGDEAQ 33 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcCCHHH
Confidence 46899999999999999999999997777543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.20 E-value=13 Score=33.56 Aligned_cols=147 Identities=11% Similarity=-0.019 Sum_probs=91.5
Q ss_pred HHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---CC---HHHHHHHH
Q 019734 71 KIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GS---TLAMVDAG 144 (336)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~---~~---~~a~~~lg 144 (336)
.+...+.+|++.+|.....++++.-|. +--++-.--.+++. .|+...-...+++.+.. +. ....-.++
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~Pt--Dlla~kfsh~a~fy----~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmya 182 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPT--DLLAVKFSHDAHFY----NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYA 182 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCch--hhhhhhhhhhHHHh----ccchhhhhhHHHHhccccCCCCcHHHHHHHHHH
Confidence 444557788888887666666666554 22333223333333 35666667777777765 22 22233566
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHH----HHHHHHHHHHHHc---CC---HHHHHHHHHHHhcCCC
Q 019734 145 LMYWEMDKKEAAISLYRQAAVLGD--PAGQFNLGISYLQ----EEAVKLLYQASIA---GH---VRAQYQLALCLHRGRG 212 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~----~~A~~~~~ka~~~---~~---~~a~~~lg~~~~~g~g 212 (336)
..+.+.|-+++|.+.-+++++.+. ..+.-.++.++.- .++.+..++.-+. +. ..-+...+.++.+
T Consensus 183 FgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE--- 259 (491)
T KOG2610|consen 183 FGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE--- 259 (491)
T ss_pred hhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc---
Confidence 667778899999999999987754 4444555555544 7777777766443 22 2234567777777
Q ss_pred CccCHHHHHHHHHHH
Q 019734 213 VDFNLQEAARWYLRA 227 (336)
Q Consensus 213 ~~~~~~~A~~~~~~a 227 (336)
...++.|.+.|.+-
T Consensus 260 -~aeye~aleIyD~e 273 (491)
T KOG2610|consen 260 -GAEYEKALEIYDRE 273 (491)
T ss_pred -ccchhHHHHHHHHH
Confidence 46788888888764
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.16 E-value=2 Score=31.96 Aligned_cols=94 Identities=10% Similarity=-0.007 Sum_probs=49.2
Q ss_pred HHHhcCCChhHHhhhHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCCCcCCH-------HHHHHHHHHHHHcC--CHHHH
Q 019734 71 KIAASFTLPQLRAASLVCKSWNDALRPLRE-AMVLLRWGKRFKHGRGVRKNL-------DKALDSFLKGAARG--STLAM 140 (336)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~a~~~lg~~~~~g~g~~~~~-------~~A~~~~~~A~~~~--~~~a~ 140 (336)
.+...+.+|++.+|..+-........+..+ +..+..-|.++..--....|+ -.|++.|.++..+. .+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 355667889999998877777777665433 255555666664411222232 23344444444442 34444
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 141 VDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
+.||.-+-....+++++.-.++++
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHh
Confidence 555554433334444444444443
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=88.79 E-value=1.6 Score=38.29 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=44.5
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 019734 124 ALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ 181 (336)
Q Consensus 124 A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 181 (336)
|..||.+|+.. ++...+++||.++...++.=.|+.+|-+++-. ..+.|..+|..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67889999886 67788899999998889999999999998744 456777777777653
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.12 E-value=7.7 Score=28.94 Aligned_cols=41 Identities=17% Similarity=0.095 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 019734 183 EAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 227 (336)
Q Consensus 183 ~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a 227 (336)
-++++|.++... ..+..+++||.-+.. ...|++++.--+++
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s----~~~Ykk~v~kak~~ 104 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGS----VKYYKKAVKKAKRG 104 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhh----HHHHHHHHHHHHHH
Confidence 345555555443 234445555555433 33344444444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.95 E-value=22 Score=32.85 Aligned_cols=242 Identities=16% Similarity=0.049 Sum_probs=133.2
Q ss_pred HHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 019734 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMY 147 (336)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~ 147 (336)
-.+...+..|+++.|. +-++.-.+.+.-.-+-.-|++... .-.|+.+-|..|-+.|..+. -+-+...+=.-.
T Consensus 125 LeAQaal~eG~~~~Ar----~kfeAMl~dPEtRllGLRgLyleA--qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r 198 (531)
T COG3898 125 LEAQAALLEGDYEDAR----KKFEAMLDDPETRLLGLRGLYLEA--QRLGAREAARHYAERAAEKAPQLPWAARATLEAR 198 (531)
T ss_pred HHHHHHHhcCchHHHH----HHHHHHhcChHHHHHhHHHHHHHH--HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 3444456778888884 444433232222222222322221 11578999999999998874 233333333333
Q ss_pred hcCCCHHHHHHHHHHHHHc-----CCH---HHHHHH--HHHHHH---HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC
Q 019734 148 WEMDKKEAAISLYRQAAVL-----GDP---AGQFNL--GISYLQ---EEAVKLLYQASIA--GHVRAQYQLALCLHRGRG 212 (336)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~-----~~~---~a~~~L--g~~~~~---~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g 212 (336)
...||.+.|+++.....+. +.. .+-..- +..... ..|...-..+.++ +...+-..-+..+..
T Consensus 199 ~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~--- 275 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFR--- 275 (531)
T ss_pred HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh---
Confidence 4679999999998765432 211 111111 111111 4455555555544 455666666667766
Q ss_pred CccCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-----cCCHHHHHHHHHHhhccCCHH
Q 019734 213 VDFNLQEAARWYLRAAEG-GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD-----CGHGKAQLEHGLGLFTEGEMM 286 (336)
Q Consensus 213 ~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~~~~~~~~~ 286 (336)
.++..++-..++.+=.. .+++ ++.+|.... .-+.++.-++++.. .++.++.+.+...-+.-|++.
T Consensus 276 -d~~~rKg~~ilE~aWK~ePHP~----ia~lY~~ar----~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 276 -DGNLRKGSKILETAWKAEPHPD----IALLYVRAR----SGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred -ccchhhhhhHHHHHHhcCCChH----HHHHHHHhc----CCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 67788888888777432 2232 333343322 22334444444432 467777788888888888888
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHh
Q 019734 287 KAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSW 329 (336)
Q Consensus 287 ~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 329 (336)
.|..--+.+.+..+-+..+.+-.-...-+-++..++..-..+-
T Consensus 347 ~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 347 AARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 8888888888877666665554333333444555555544433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.91 E-value=8.2 Score=31.58 Aligned_cols=94 Identities=18% Similarity=0.118 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----
Q 019734 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---- 266 (336)
Q Consensus 196 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~---- 266 (336)
...++..+|..|.. .||.+.|++.|.++.+.. -.+.++++-.+... .+|+.....+..++-..
T Consensus 35 ir~~~~~l~~~~~~----~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~----~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 35 IRMALEDLADHYCK----IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF----FGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred HHHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhcc
Confidence 35688899999998 899999999999986542 12333333333322 23888888888888542
Q ss_pred CCHHHH----HHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 267 GHGKAQ----LEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 267 ~~~~a~----~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
++++.. ..-|..+...++|.+|...|-.+..
T Consensus 107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 444433 2346666778999999999988764
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=87.66 E-value=5.2 Score=28.82 Aligned_cols=47 Identities=23% Similarity=0.046 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHHHHc----C-------CHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 252 SHRQARKWMKRAADC----G-------HGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 252 ~~~~A~~~~~~a~~~----~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
|+..|++.+.+..+. + ...+..+++.++...|++++|+..+++|++.
T Consensus 13 dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 13 DYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred CHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 667776666665541 1 1345678888888899999999999998864
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.41 E-value=13 Score=35.21 Aligned_cols=100 Identities=15% Similarity=0.045 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC----C-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--
Q 019734 198 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-- 266 (336)
Q Consensus 198 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~----~-----~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-- 266 (336)
.....||.++..- .+|.+.|...+++|-.. + -.++...|+.+|... .+.+..+...++++++.
T Consensus 47 rt~LqLg~lL~~y---T~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~---~~s~~~~KalLrkaielsq 120 (629)
T KOG2300|consen 47 RTHLQLGALLLRY---TKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQL---AQSFPPAKALLRKAIELSQ 120 (629)
T ss_pred HHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhc
Confidence 3445566554421 67888888888887432 1 235666778888653 33788888999999884
Q ss_pred CCH----HHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHH
Q 019734 267 GHG----KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 303 (336)
Q Consensus 267 ~~~----~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a 303 (336)
+.+ .-.+.|+.++.-..|+..|.+.+.-+.+.-++..
T Consensus 121 ~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~ 161 (629)
T KOG2300|consen 121 SVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHIC 161 (629)
T ss_pred CCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhh
Confidence 332 2237888888888999999998666665544433
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.75 E-value=2.6 Score=37.75 Aligned_cols=82 Identities=16% Similarity=0.051 Sum_probs=48.6
Q ss_pred ccCHHHHHHHHHHHHHCC--C----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCH
Q 019734 214 DFNLQEAARWYLRAAEGG--Y----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEM 285 (336)
Q Consensus 214 ~~~~~~A~~~~~~a~~~~--~----~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~ 285 (336)
.++|..|+..|.+++... + ...+.|.+.+... -+|+..|+.--.+++.. .+..+++.-+.++++...+
T Consensus 94 ~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~----l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~ 169 (390)
T KOG0551|consen 94 EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY----LGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERF 169 (390)
T ss_pred hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHH
Confidence 566666666666665431 1 2234444444432 22666666666666653 4566666777777777777
Q ss_pred HHHHHHHHHHHHcC
Q 019734 286 MKAVVYLELATRAG 299 (336)
Q Consensus 286 ~~A~~~~~~A~~~~ 299 (336)
++|..|.+..+...
T Consensus 170 ~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 170 AEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHhhhhhhh
Confidence 77777777665543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=86.63 E-value=6 Score=30.68 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 019734 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNL 175 (336)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~L 175 (336)
.+|+.+..+|..|...|+..++-+++++|.+.|-.+|+.++
T Consensus 118 ~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~kEAC~nI 158 (161)
T PF09205_consen 118 INPEFLVKIANAYKKLGNTREANELLKEACEKGLKEACRNI 158 (161)
T ss_dssp S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchHHHHHHh
Confidence 46777788888888888888888888888888888877654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.45 E-value=0.42 Score=42.76 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 120 NLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 120 ~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
++++|+..|..|+.++ ....+...+.++...+....|++-+..|++.
T Consensus 129 ~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei 177 (377)
T KOG1308|consen 129 EFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI 177 (377)
T ss_pred chhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc
Confidence 4555555555555442 2233334445555555555555555555443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=86.38 E-value=29 Score=34.89 Aligned_cols=37 Identities=14% Similarity=-0.099 Sum_probs=17.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 019734 252 SHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLEL 294 (336)
Q Consensus 252 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 294 (336)
+++.|.+.|.++-.-.+ .-..|-+.|++++|.+.-++
T Consensus 780 dfe~ae~lf~e~~~~~d------ai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 780 DFEIAEELFTEADLFKD------AIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hHHHHHHHHHhcchhHH------HHHHHhccccHHHHHHHHHH
Confidence 66666666655422111 11234456666666555443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=86.32 E-value=4 Score=26.02 Aligned_cols=37 Identities=8% Similarity=-0.059 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFN 174 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~ 174 (336)
+.+|.++..++..|++++|..+...+++ +++..+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3467788888888888888888888764 466666543
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=86.20 E-value=2.8 Score=36.68 Aligned_cols=58 Identities=14% Similarity=0.023 Sum_probs=34.4
Q ss_pred HHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhc
Q 019734 220 AARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT 281 (336)
Q Consensus 220 A~~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 281 (336)
|+.||.+|. .++.+..++.||.++... ++.-.|+-||-|++-- ..+.+..||..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~----~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQ----GDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHT----T-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccc----cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 566777774 346677777777777542 2667777777777642 345566666665544
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=85.69 E-value=9.4 Score=29.64 Aligned_cols=89 Identities=16% Similarity=0.054 Sum_probs=51.1
Q ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH--HcCCHHHHHHHHHHhhccCCHHHHHHH
Q 019734 214 DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA--DCGHGKAQLEHGLGLFTEGEMMKAVVY 291 (336)
Q Consensus 214 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~~~~~A~~~ 291 (336)
-++...-+.+|-+ .+-..-++.++.-+....| ..++=...++... +.-+|.....+|.+|.+.|+..++-..
T Consensus 69 C~NlKrVi~C~~~---~n~~se~vD~ALd~lv~~~---kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~el 142 (161)
T PF09205_consen 69 CGNLKRVIECYAK---RNKLSEYVDLALDILVKQG---KKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANEL 142 (161)
T ss_dssp -S-THHHHHHHHH---TT---HHHHHHHHHHHHTT----HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hcchHHHHHHHHH---hcchHHHHHHHHHHHHHhc---cHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHH
Confidence 3455555555543 2323334444444443222 3333333444333 235678889999999999999999999
Q ss_pred HHHHHHcCcHHHHHHHH
Q 019734 292 LELATRAGETAADHVKN 308 (336)
Q Consensus 292 ~~~A~~~~~~~a~~~~~ 308 (336)
+.+|++.|-.+|+.+..
T Consensus 143 l~~ACekG~kEAC~nIn 159 (161)
T PF09205_consen 143 LKEACEKGLKEACRNIN 159 (161)
T ss_dssp HHHHHHTT-HHHHHHHH
T ss_pred HHHHHHhchHHHHHHhc
Confidence 99999999999987653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=84.99 E-value=8 Score=27.81 Aligned_cols=48 Identities=17% Similarity=0.190 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHc----C-------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 119 KNLDKALDSFLKGAAR----G-------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~----~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
+|+..|++.+.+.... + ...+..+++.++...|++++|+..++.|+..
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4666665555544331 1 1356777888888888888888888888743
|
|
| >cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=84.98 E-value=1.8 Score=29.86 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 120 NLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 120 ~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
|+++|+.+..+|+..+ ..|++++|+.+|.+|++.
T Consensus 2 ~l~kai~Lv~~A~~eD-------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDED-------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhh-------------HhhhHHHHHHHHHHHHHH
Confidence 4567777777776554 457788888888887753
|
This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=84.74 E-value=15 Score=27.88 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=46.0
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCC----------CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHH------
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLR----------EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA------ 132 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~------ 132 (336)
+-.+-..+..|-+.+|...|++..+.....+ ++..+-.|...+.. .+++++++.--++|+
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~----Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG----LGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHhhc
Confidence 4445555677778888888887777654322 12223333333333 345544443333333
Q ss_pred -HcC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 133 -ARG------STLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 133 -~~~------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
++. ...+.++.+..+...|+.++|+..|+.+.
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 221 22345555666666666666666666664
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.62 E-value=17 Score=29.77 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
.+++..+|..|.. .||.+.|++.|.++-... -.+.++.+-.+....+|+.....++.++-
T Consensus 36 r~~~~~l~~~~~~----~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 36 RMALEDLADHYCK----IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4677788888888 578889999888876542 23556666777777788888888877764
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=84.39 E-value=16 Score=27.79 Aligned_cols=79 Identities=19% Similarity=0.077 Sum_probs=46.6
Q ss_pred cCHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-------cCCHH---
Q 019734 215 FNLQEAARWYLRAAEGG--------------YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD-------CGHGK--- 270 (336)
Q Consensus 215 ~~~~~A~~~~~~a~~~~--------------~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~-------~~~~~--- 270 (336)
+-+.+|..-+++|.+.. |.-++-.|+..+. +.| ++++++.-..+++. +..-+
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~-~Lg---ry~e~L~sA~~aL~YFNRRGEL~qdeGkl 98 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALA-GLG---RYDECLQSADRALRYFNRRGELHQDEGKL 98 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHH-HTT----HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHH-hhc---cHHHHHHHHHHHHHHHhhccccccccchh
Confidence 45677777777764420 2344555555553 333 66666655555553 32222
Q ss_pred ---HHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 271 ---AQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 271 ---a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
+-++-+..+...|..++|+..|+++.+
T Consensus 99 WIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 99 WIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 335666667779999999999999976
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.19 E-value=21 Score=29.13 Aligned_cols=107 Identities=19% Similarity=0.230 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHcC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH---------HHH
Q 019734 119 KNLDKALDSFLKGAARG----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQ---------EEA 184 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~---------~~A 184 (336)
+..++|+.-|....+-| ...+.+..+.+....|+...|+..|..+..- ..|.....++++-.. +.-
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV 151 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDV 151 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHH
Confidence 34445555554444332 2344555555555555555555555554322 233333233222211 222
Q ss_pred HHHHHHHHHcCCH---HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 019734 185 VKLLYQASIAGHV---RAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 229 (336)
Q Consensus 185 ~~~~~ka~~~~~~---~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~ 229 (336)
..-.+.....+++ .+--.||..-.. .+|+.+|..||...++
T Consensus 152 ~srvepLa~d~n~mR~sArEALglAa~k----agd~a~A~~~F~qia~ 195 (221)
T COG4649 152 SSRVEPLAGDGNPMRHSAREALGLAAYK----AGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhhhccCCCChhHHHHHHHHhHHHHh----ccchHHHHHHHHHHHc
Confidence 2222222222222 233345554444 5777777777776654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.77 E-value=41 Score=32.01 Aligned_cols=161 Identities=18% Similarity=0.129 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-G-STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGIS 178 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~ 178 (336)
....|.++.+ .+|++++.++.+..--. . ...-...+...+...|-++.|+.+- .|++.-|.|+.-
T Consensus 264 ~~~~fk~av~-------~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~------~D~~~rFeLAl~ 330 (443)
T PF04053_consen 264 SELEFKTAVL-------RGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFV------TDPDHRFELALQ 330 (443)
T ss_dssp HHHHHHHHHH-------TT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS------S-HHHHHHHHHH
T ss_pred HHHHHHHHHH-------cCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhc------CChHHHhHHHHh
Confidence 4455555555 46777766665422111 1 2233445566666667666665542 233333333322
Q ss_pred HHH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHH
Q 019734 179 YLQ-EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQAR 257 (336)
Q Consensus 179 ~~~-~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~ 257 (336)
+-. +.|. +-|-+.+++.-|..||..... .+|.+.|..+|+++ ++.. .|..+|.. .| +.++=.
T Consensus 331 lg~L~~A~---~~a~~~~~~~~W~~Lg~~AL~----~g~~~lAe~c~~k~---~d~~---~L~lLy~~-~g---~~~~L~ 393 (443)
T PF04053_consen 331 LGNLDIAL---EIAKELDDPEKWKQLGDEALR----QGNIELAEECYQKA---KDFS---GLLLLYSS-TG---DREKLS 393 (443)
T ss_dssp CT-HHHHH---HHCCCCSTHHHHHHHHHHHHH----TTBHHHHHHHHHHC---T-HH---HHHHHHHH-CT----HHHHH
T ss_pred cCCHHHHH---HHHHhcCcHHHHHHHHHHHHH----cCCHHHHHHHHHhh---cCcc---ccHHHHHH-hC---CHHHHH
Confidence 221 1111 112233567778888887777 78888888888874 2333 23333432 12 555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 019734 258 KWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLEL 294 (336)
Q Consensus 258 ~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 294 (336)
+....|...|+....+.-.. -.||.++.+..+.+
T Consensus 394 kl~~~a~~~~~~n~af~~~~---~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 394 KLAKIAEERGDINIAFQAAL---LLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHTT-HHHHHHHHH---HHT-HHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHH---HcCCHHHHHHHHHH
Confidence 55566655666444433322 24666666655544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=83.68 E-value=2.9 Score=24.25 Aligned_cols=30 Identities=7% Similarity=0.190 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhccCCHHHHHHH--HHHHHHcC
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVY--LELATRAG 299 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~--~~~A~~~~ 299 (336)
+..+.+|..+...|++++|++. |+-+...+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld 33 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALD 33 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 4567788888888999999998 44665543
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.50 E-value=1.7 Score=40.78 Aligned_cols=105 Identities=21% Similarity=0.113 Sum_probs=75.2
Q ss_pred ccCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhccCCHHHHH
Q 019734 214 DFNLQEAARWYLRAAEGGYVR--AMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAV 289 (336)
Q Consensus 214 ~~~~~~A~~~~~~a~~~~~~~--a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~~~~~A~ 289 (336)
.++++.|+..|.+|++..... -+-+-+..+.+ ..++..|+.-+.+|++... ..+++.-|..+...+.+.+|.
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK----~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK----VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhhee----echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 689999999999999886533 34455566654 3399999999999998753 455667777778888888888
Q ss_pred HHHHHHHHcC--cHHHHHHHHHHHhhcChhcHHHH
Q 019734 290 VYLELATRAG--ETAADHVKNVILQQLSATSRDRA 322 (336)
Q Consensus 290 ~~~~~A~~~~--~~~a~~~~~~~~~~~~~~~~~~a 322 (336)
..|+...... .+.+......+....++...+.+
T Consensus 93 ~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~a 127 (476)
T KOG0376|consen 93 LDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKA 127 (476)
T ss_pred HHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhc
Confidence 8888887754 45555555555555555444444
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.49 E-value=49 Score=32.71 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=57.3
Q ss_pred cCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH----HH
Q 019734 118 RKNLDKALDSFLKGAAR--------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYLQ----EE 183 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~----~~ 183 (336)
.+|+..+++||+..+.- ..+..+..|..+|....+.++|++++..|-+.+ ++-..+..-.+... ++
T Consensus 367 ~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~ 446 (872)
T KOG4814|consen 367 MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEE 446 (872)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHH
Confidence 47999999999998863 235667889999999999999999999997664 66555554444443 88
Q ss_pred HHHHHHHHH
Q 019734 184 AVKLLYQAS 192 (336)
Q Consensus 184 A~~~~~ka~ 192 (336)
|+.+..+..
T Consensus 447 AL~~~~~~~ 455 (872)
T KOG4814|consen 447 ALTCLQKIK 455 (872)
T ss_pred HHHHHHHHH
Confidence 888877664
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.28 E-value=24 Score=28.90 Aligned_cols=109 Identities=15% Similarity=0.116 Sum_probs=49.9
Q ss_pred cCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHH----HHHHHHHHHHHHcC-CHHHHHHHH-----HHHhcCCCCc
Q 019734 149 EMDKKEAAISLYRQAAVLGD----PAGQFNLGISYLQ----EEAVKLLYQASIAG-HVRAQYQLA-----LCLHRGRGVD 214 (336)
Q Consensus 149 ~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~~~~----~~A~~~~~ka~~~~-~~~a~~~lg-----~~~~~g~g~~ 214 (336)
..+..++|+.-|....+.|. .-+.+..|.+..+ ..|+.+|..+.... .|.....++ .++.. .
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD----~ 145 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD----N 145 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc----c
Confidence 44556666666655554421 2344555555555 66666666554432 222222222 22222 3
Q ss_pred cCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 019734 215 FNLQEAARWYLRAAEGGYV---RAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 265 (336)
Q Consensus 215 ~~~~~A~~~~~~a~~~~~~---~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~ 265 (336)
+-|+.-..-.+-....+++ .+.-.||..-.+ .+++.+|..||...+.
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~k----agd~a~A~~~F~qia~ 195 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYK----AGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHh----ccchHHHHHHHHHHHc
Confidence 4444444433333322322 233344544433 2266666666666654
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.22 E-value=45 Score=32.11 Aligned_cols=184 Identities=16% Similarity=0.078 Sum_probs=107.7
Q ss_pred cCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHH--HHHHHHHHH---------
Q 019734 118 RKNLDKALDSFLKGAAR----GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD-PAGQ--FNLGISYLQ--------- 181 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~a~--~~Lg~~~~~--------- 181 (336)
.++.+.|+..++.++.. -+.--.+.+|.++....++..|...+....+..+ ..+. |..|-|++.
T Consensus 280 ~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~ 359 (546)
T KOG3783|consen 280 KGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAG 359 (546)
T ss_pred cccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcc
Confidence 35689999999988872 1344566778888777888888888888776643 3333 445556654
Q ss_pred ---HHHHHHHHHHHH------------------------cC-----CHHH--HHHHHHHHhcCC-CCccC-HHHHHHHHH
Q 019734 182 ---EEAVKLLYQASI------------------------AG-----HVRA--QYQLALCLHRGR-GVDFN-LQEAARWYL 225 (336)
Q Consensus 182 ---~~A~~~~~ka~~------------------------~~-----~~~a--~~~lg~~~~~g~-g~~~~-~~~A~~~~~ 225 (336)
++|-.+++...+ .+ .+.+ ++.+..++. |. +..++ ..+...-++
T Consensus 360 ~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wn-gf~~~s~~~l~k~~~~~~ 438 (546)
T KOG3783|consen 360 GNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWN-GFSRMSKNELEKMRAELE 438 (546)
T ss_pred cchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHh-hcccCChhhHHHHHHHHh
Confidence 222222222211 01 1111 244444432 22 11222 221222121
Q ss_pred -HHHH-CCC-HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc---------CCHHHHHHHHHHhhccCC-HHHHHHHH
Q 019734 226 -RAAE-GGY-VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---------GHGKAQLEHGLGLFTEGE-MMKAVVYL 292 (336)
Q Consensus 226 -~a~~-~~~-~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~---------~~~~a~~~lg~~~~~~~~-~~~A~~~~ 292 (336)
...+ .++ .--.+-+|.++.+ .| +...|..+|...++. -.|.++|-||.+|++.+. ..++..|+
T Consensus 439 ~~~~~d~Dd~~lk~lL~g~~lR~-Lg---~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L 514 (546)
T KOG3783|consen 439 NPKIDDSDDEGLKYLLKGVILRN-LG---DSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALL 514 (546)
T ss_pred ccCCCCchHHHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHH
Confidence 1121 111 2224566777744 33 999999999999852 237889999999999888 99999999
Q ss_pred HHHHHcC-cHHHHHH
Q 019734 293 ELATRAG-ETAADHV 306 (336)
Q Consensus 293 ~~A~~~~-~~~a~~~ 306 (336)
.+|-+.. +-+-+..
T Consensus 515 ~kAr~~~~dY~lenR 529 (546)
T KOG3783|consen 515 LKAREYASDYELENR 529 (546)
T ss_pred HHHHhhccccchhhH
Confidence 9999865 3343333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.07 E-value=39 Score=33.74 Aligned_cols=41 Identities=7% Similarity=-0.109 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 121 LDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 121 ~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
+++|+.+.+. .-|+.-|..|+..-...-+++.|.+.|-+..
T Consensus 679 ledA~qfiEd---nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 679 LEDAIQFIED---NPHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred hHHHHHHHhc---CCchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 3444444432 2588889889888887778888888877654
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=82.90 E-value=39 Score=31.15 Aligned_cols=155 Identities=10% Similarity=-0.017 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH---H-----HHcC--------CHHH
Q 019734 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLLYQ---A-----SIAG--------HVRA 199 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~A~~~~~k---a-----~~~~--------~~~a 199 (336)
|.+++.+++.++...||.+.|.+++++|+-. ++.++.. .|.. . .... .-.+
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~--------~e~~~~~-----~F~~~~~~~~~g~~rL~~~~~eNR~ffla 105 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFA--------FERAFHP-----SFSPFRSNLTSGNCRLDYRRPENRQFFLA 105 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHHHH-----HhhhhhcccccCccccCCccccchHHHHH
Confidence 7788999999999999999999999998732 1111111 1100 0 0000 0112
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CC-CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH--c-----CCH
Q 019734 200 QYQLALCLHRGRGVDFNLQEAARWYLRAAE--GG-YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD--C-----GHG 269 (336)
Q Consensus 200 ~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~-~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~--~-----~~~ 269 (336)
.+.....+.+ .|-+..|.+|.+-... +. |+-+....-..|.-.. +.++--+.+++.... . ..|
T Consensus 106 l~r~i~~L~~----RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs---~~y~~Li~~~~~~~~~~~~~~~~~lP 178 (360)
T PF04910_consen 106 LFRYIQSLGR----RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRS---RQYQWLIDFSESPLAKCYRNWLSLLP 178 (360)
T ss_pred HHHHHHHHHh----cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhc---CCHHHHHHHHHhHhhhhhhhhhhhCc
Confidence 2222233333 5667777777777644 33 6666655555554322 245444444444333 1 123
Q ss_pred HHHHHHHHHhhccCCH---------------HHHHHHHHHHHHcCcHHHHHHHHHH
Q 019734 270 KAQLEHGLGLFTEGEM---------------MKAVVYLELATRAGETAADHVKNVI 310 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~---------------~~A~~~~~~A~~~~~~~a~~~~~~~ 310 (336)
...+.++.+++..++. ++|...+++|+..-+.-....+..+
T Consensus 179 n~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~~l 234 (360)
T PF04910_consen 179 NFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLDKL 234 (360)
T ss_pred cHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 4556777777777766 8999999999887766666665555
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.58 E-value=7.2 Score=37.78 Aligned_cols=77 Identities=19% Similarity=0.208 Sum_probs=47.7
Q ss_pred cCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH----HHHHHHH
Q 019734 118 RKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYLQ----EEAVKLL 188 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~----~~A~~~~ 188 (336)
.|+...|+.++..|.... ......+|+.++...+-.-.|-.++.+++... .|-.++-+|++|+. +.|++.|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 567777777777766542 22345566666666666666666766666553 34455666666665 6677777
Q ss_pred HHHHHc
Q 019734 189 YQASIA 194 (336)
Q Consensus 189 ~ka~~~ 194 (336)
++|++.
T Consensus 700 ~~a~~~ 705 (886)
T KOG4507|consen 700 RQALKL 705 (886)
T ss_pred HHHHhc
Confidence 776654
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.51 E-value=46 Score=31.74 Aligned_cols=109 Identities=17% Similarity=0.058 Sum_probs=73.8
Q ss_pred cCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHc----CC-----HHHHHHHHHHHHH-
Q 019734 118 RKNLDKALDSFLKGAARG-----STLAMVDAGLMYWE-MDKKEAAISLYRQAAVL----GD-----PAGQFNLGISYLQ- 181 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~-~~~~~~A~~~~~~a~~~----~~-----~~a~~~Lg~~~~~- 181 (336)
+.++.+++++++...... .+....+||.+++. ..+++.|...+++|... +. .++...|+.+|..
T Consensus 22 PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~ 101 (629)
T KOG2300|consen 22 PPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQL 101 (629)
T ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHh
Confidence 557888888888666542 23455677776644 58888899888888633 11 2455567777766
Q ss_pred ----HHHHHHHHHHHHc--CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC
Q 019734 182 ----EEAVKLLYQASIA--GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 230 (336)
Q Consensus 182 ----~~A~~~~~ka~~~--~~----~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~ 230 (336)
..+...+.+|++. +. ..-.+.|+.++.. .+|+.-|.+.+...++.
T Consensus 102 ~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~i----dkD~~sA~elLavga~s 156 (629)
T KOG2300|consen 102 AQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHII----DKDFPSALELLAVGAES 156 (629)
T ss_pred cCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhh----hccchhHHHHHhccccc
Confidence 6777888888775 33 3456778888776 78888888886654433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=81.08 E-value=70 Score=32.84 Aligned_cols=173 Identities=18% Similarity=0.112 Sum_probs=106.5
Q ss_pred CCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHH
Q 019734 119 KNLDKALDSFLKGAAR-G-STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQ 190 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~-~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~k 190 (336)
+++.+|..-..+..+. . ...+...-|..+.+.|+.++|..+++-.... .|...+-.|-.+|.+ ++|+.+|++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 6888999888888776 3 4555666688899999999999666654333 567777888888887 999999999
Q ss_pred HHHcC-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CCCc-----ccHHHHHHHHHHH
Q 019734 191 ASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFG-EGLP-----LSHRQARKWMKRA 263 (336)
Q Consensus 191 a~~~~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~-~g~~-----~~~~~A~~~~~~a 263 (336)
++... .-+-.+.+=.+|.+-....+.-..|++.|+- -+..+-..+..-.++... .+.+ .-..-|....++-
T Consensus 103 ~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~ 180 (932)
T KOG2053|consen 103 ANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKL 180 (932)
T ss_pred HHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHH
Confidence 98763 3455555666666521112334456666663 233333333333444333 1111 1233455555555
Q ss_pred HHcC-CH----HHHHHHHHHhhccCCHHHHHHHHHH
Q 019734 264 ADCG-HG----KAQLEHGLGLFTEGEMMKAVVYLEL 294 (336)
Q Consensus 264 ~~~~-~~----~a~~~lg~~~~~~~~~~~A~~~~~~ 294 (336)
++.+ .. +....+ .+...+|++++|..++..
T Consensus 181 l~~~gk~~s~aE~~Lyl-~iL~~~~k~~eal~~l~~ 215 (932)
T KOG2053|consen 181 LEKKGKIESEAEIILYL-LILELQGKYQEALEFLAI 215 (932)
T ss_pred hccCCccchHHHHHHHH-HHHHhcccHHHHHHHHHH
Confidence 5543 32 222222 335568899999999844
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.04 E-value=4.2 Score=38.21 Aligned_cols=105 Identities=12% Similarity=0.034 Sum_probs=74.5
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (336)
.-.++...+....+..|+.+|-+.++..++ .+...-+.+..+.. ..++..|+.-+.+|++.. ...+++.-|.
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpn--ca~~~anRa~a~lK----~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~ 80 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPN--CAIYFANRALAHLK----VESFGGALHDALKAIELDPTYIKAYVRRGT 80 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCc--ceeeechhhhhhee----echhhhHHHHHHhhhhcCchhhheeeeccH
Confidence 345667778889999999999999988775 33333334444444 568888998899998875 4566677777
Q ss_pred HHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHHHH
Q 019734 146 MYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGIS 178 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~ 178 (336)
.+..++.+.+|+.-|++... ++++.+...+-.|
T Consensus 81 a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 81 AVMALGEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 77778888888888887654 4666665544433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 336 | ||||
| 2xm6_A | 490 | Crystal Structure Of The Protein Corresponding To L | 1e-10 | ||
| 2xm6_A | 490 | Crystal Structure Of The Protein Corresponding To L | 1e-08 |
| >pdb|2XM6|A Chain A, Crystal Structure Of The Protein Corresponding To Locus C5321 From Cft073 E.Coli Strain Length = 490 | Back alignment and structure |
|
| >pdb|2XM6|A Chain A, Crystal Structure Of The Protein Corresponding To Locus C5321 From Cft073 E.Coli Strain Length = 490 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 9e-48
Identities = 45/223 (20%), Positives = 77/223 (34%), Gaps = 24/223 (10%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
L G + G+GV KNL KA + K + G +Y+ + +
Sbjct: 39 SGCFNL--GVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNK 96
Query: 155 AAISLYRQAAVLGDPAGQFNLGISYLQ--------EEAVKLLYQASIAGHVRAQYQLALC 206
A+ Y +A L G +LG Y ++AV+ +A L
Sbjct: 97 -ALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSL 155
Query: 207 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 266
GRG +L++A Y +A + +N Y GEG + ++A +A +
Sbjct: 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215
Query: 267 GHGKAQL------EHGLGLFTEGEMMKAVVYLELATRAGETAA 303
+G +G G +A+ + + G A
Sbjct: 216 ENGGGCFNLGAMQYNGEG--VTRNEKQAIENFKKGCKLGAKGA 256
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 4e-45
Identities = 43/186 (23%), Positives = 66/186 (35%), Gaps = 16/186 (8%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
LL G + G+GV +N +KAL + K G +Y D K+
Sbjct: 75 NGCHLL--GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKK 132
Query: 155 AAISLYRQAAVLGDPAGQFNLGISYLQ--------EEAVKLLYQASIAGHVRAQYQLALC 206
A + + +A L D G LG Y ++A+ +A +
Sbjct: 133 A-VEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNM 191
Query: 207 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 266
H G G N +EA Y +A E +N GEG+ + +QA + K+
Sbjct: 192 YHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251
Query: 267 GHGKAQ 272
G A
Sbjct: 252 GAKGAC 257
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 1e-42
Identities = 38/206 (18%), Positives = 65/206 (31%), Gaps = 22/206 (10%)
Query: 117 VRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKEAAISLYRQAAVLGDPAG 171
K+ +A F K + G++Y+ E + K+AA S Y +A L G
Sbjct: 18 KEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAA-SFYAKACDLNYSNG 76
Query: 172 QFNLGISYLQ--------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARW 223
LG Y +A++ +A + L H G+ V + ++A +
Sbjct: 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEY 136
Query: 224 YLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQ------LEHGL 277
+ +A + Y G G P ++A +A D HG
Sbjct: 137 FTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGE 196
Query: 278 GLFTEGEMMKAVVYLELATRAGETAA 303
G +A+ A
Sbjct: 197 G--ATKNFKEALARYSKACELENGGG 220
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 5e-39
Identities = 37/185 (20%), Positives = 71/185 (38%), Gaps = 16/185 (8%)
Query: 133 ARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ--------EEA 184
A +V G ++ A + +A L + +G FNLG+ Y Q ++A
Sbjct: 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKA 61
Query: 185 VKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYS 244
+A + + L + G+GV N +A ++Y +A + Y + Y
Sbjct: 62 ASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYH 121
Query: 245 FGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLG-LFTEGE-----MMKAVVYLELATRA 298
G+ + ++A ++ +A D G LG L+ G + KA+ + A
Sbjct: 122 DGKVVTRDFKKAVEYFTKACDLNDGDGC--TILGSLYDAGRGTPKDLKKALASYDKACDL 179
Query: 299 GETAA 303
++
Sbjct: 180 KDSPG 184
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 6e-32
Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 16/157 (10%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
E L G + G+ V ++ KA++ F K G +Y D K+
Sbjct: 111 EGCASL--GGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKK 168
Query: 155 AAISLYRQAAVLGDPAGQFNLGISYLQ--------EEAVKLLYQASIAGHVRAQYQLALC 206
A + Y +A L D G FN G Y +EA+ +A + + L
Sbjct: 169 AL-ASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAM 227
Query: 207 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCY 243
+ G GV N ++A + + + G A
Sbjct: 228 QYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQLK 264
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 1e-18
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 16/124 (12%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
+ +L G + GRG K+L KAL S+ K + +AG MY + KE
Sbjct: 147 DGCTIL--GSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKE 204
Query: 155 AAISLYRQAAVLGDPAGQFNLGISYLQ--------EEAVKLLYQASIAGHVRAQYQLALC 206
A + Y +A L + G FNLG ++A++ + G A L
Sbjct: 205 AL-ARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQL 263
Query: 207 LHRG 210
+
Sbjct: 264 KIKV 267
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 163 bits (416), Expect = 1e-46
Identities = 59/223 (26%), Positives = 93/223 (41%), Gaps = 24/223 (10%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
+A + L G R+ G K+L +A+D F + A +G T A GL Y D +
Sbjct: 40 KAQLEL--GYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQ 97
Query: 155 AAISLYRQAAVLGDPAGQFNLGISYLQ--------EEAVKLLYQASIAGHVRAQYQLALC 206
A+ Y++AA+ G P Q NLG+ Y + E+VK A+ G Q +
Sbjct: 98 -AVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDA 156
Query: 207 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 266
G GV + A WY +AAE G V + YS G G+ + + +W +++A
Sbjct: 157 YFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS 216
Query: 267 GHGKAQ------LEHGLGLFTEGEMMKAVVYLELATRAGETAA 303
G Q G+G + ++ V + G + A
Sbjct: 217 GDELGQLHLADMYYFGIG--VTQDYTQSRVLFSQSAEQGNSIA 257
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 6e-44
Identities = 42/223 (18%), Positives = 82/223 (36%), Gaps = 23/223 (10%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
+A L G + G GV+ + +++ F A +G G Y+ D
Sbjct: 112 QAQQNL--GVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVM 169
Query: 155 AAISLYRQAAVLGDPAGQFNLGISYLQ--------EEAVKLLYQASIAGHVRAQYQLALC 206
A Y +AA G+ LG Y + + + +++ +G Q LA
Sbjct: 170 AR-EWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADM 228
Query: 207 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 266
+ G GV + ++ + ++AE G A + G +A +W +++A+
Sbjct: 229 YYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288
Query: 267 GHGKAQLEHGLGLFTEGE------MMKAVVYLELATRAGETAA 303
G+ Q L+ +G +A+ + + G+ A
Sbjct: 289 GNSDGQYYLAH-LYDKGAEGVAKNREQAISWYTKSAEQGDATA 330
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 5e-43
Identities = 57/221 (25%), Positives = 91/221 (41%), Gaps = 22/221 (9%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW------EMDKK 153
A L G + G K KAL+ + K A +G++ +Y +++
Sbjct: 256 IAQFRL--GYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNRE 313
Query: 154 EAAISLYRQAAVLGDPAGQFNLGISYLQ-------EEAVKLLYQASIAGHVRAQYQLALC 206
+A IS Y ++A GD Q NLG Y + ++AV+ +A+ G AQ+ L
Sbjct: 314 QA-ISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNA 372
Query: 207 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 266
L +G+GV + Q+AA W +AAE G A Y +G G+ + QA W A+
Sbjct: 373 LLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432
Query: 267 GHGKAQLE---HGLGLFTEGEMMKAVVYLELATRAGETAAD 304
E T ++ +A L+ + E A
Sbjct: 433 DMNLFGTENRNITEKKLTAKQLQQA---ELLSQQYIEKYAP 470
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 8e-42
Identities = 46/210 (21%), Positives = 84/210 (40%), Gaps = 22/210 (10%)
Query: 113 HGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKEAAISLYRQAAVLG 167
+ + L+ + A G A ++ G Y+ D +A +R+AA G
Sbjct: 15 ALVSLPALGNVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAM-DWFRRAAEQG 73
Query: 168 DPAGQFNLGISYLQ--------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQE 219
++ LG+ Y+ +AV +A++ G +AQ L + H G GV + E
Sbjct: 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAE 133
Query: 220 AARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQ------L 273
+ +W+ AAE G + Y G+G+ + AR+W +AA+ G+ +
Sbjct: 134 SVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMY 193
Query: 274 EHGLGLFTEGEMMKAVVYLELATRAGETAA 303
GLG E + + + +G+
Sbjct: 194 SRGLG--VERNDAISAQWYRKSATSGDELG 221
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 4e-35
Identities = 43/199 (21%), Positives = 82/199 (41%), Gaps = 17/199 (8%)
Query: 100 EAMVLLRWGKRFKHG-RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKK---EA 155
+ L + G GV KN ++A+ + K A +G A + G +Y+ + + +
Sbjct: 292 DGQYYL--AHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKK 349
Query: 156 AISLYRQAAVLGDPAGQFNLGISYLQ--------EEAVKLLYQASIAGHVRAQYQLALCL 207
A+ +R+AA G+ A QFNLG + LQ ++A + +A+ G AQ QL
Sbjct: 350 AVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIY 409
Query: 208 HRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYS---FGEGLPLSHRQARKWMKRAA 264
+ G GV+ + +A W+ A+ + L + +++++++ A
Sbjct: 410 YYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKYA 469
Query: 265 DCGHGKAQLEHGLGLFTEG 283
+ Q G
Sbjct: 470 PEAWARMQKLKAQSAVKTG 488
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 4e-40
Identities = 47/251 (18%), Positives = 83/251 (33%), Gaps = 26/251 (10%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDK------K 153
V L ++ + + + L G +RG+ A + D +
Sbjct: 177 ICYVEL--ATVYQKKQQP-EQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDE 233
Query: 154 EAAISLYRQAAVLGDPAGQFNLGISYLQ-------EEAVKLLYQASIAGHVRAQYQLALC 206
+ A +L + A G PA +L E+ +K L A RA+ L
Sbjct: 234 KTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKL 292
Query: 207 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 266
+ G+ V + + A + +A A Y Y G + ++A + AA
Sbjct: 293 YYEGKWVPADAKAAEAHFEKAVGREV-AADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351
Query: 267 GHGKAQL------EHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRD 320
G A G G T+ + + A V+ +LA A+ + + L+ R
Sbjct: 352 GQNSADFAIAQLFSQGKG--TKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRA 409
Query: 321 RAMLVVDSWRA 331
+V A
Sbjct: 410 EGQRLVQQELA 420
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 3e-36
Identities = 35/218 (16%), Positives = 64/218 (29%), Gaps = 15/218 (6%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKK---EAA 156
A + + + A L+ A G + V + ++ + E
Sbjct: 212 TAQRVDSVARVLGDATLGTPDEKTAQA-LLEKIAPGYPASWVSLAQLLYDFPELGDVEQM 270
Query: 157 ISLYRQAAVLGDPAGQFNLGISYLQ--------EEAVKLLYQASIAGHVRAQYQLALCLH 208
+ P + LG Y + + A ++ ++ V A Y L
Sbjct: 271 MKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAH-FEKAVGREVAADYYLGQIYR 329
Query: 209 RGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 268
RG Q+A L AA G A + + +S G+G A + + A
Sbjct: 330 RGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389
Query: 269 GKAQ--LEHGLGLFTEGEMMKAVVYLELATRAGETAAD 304
+A T + + ++ A T A
Sbjct: 390 PEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTLAQ 427
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 4e-32
Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 15/174 (8%)
Query: 113 HGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLG 167
+ ++++ + G A A + G +Y+E D K A + + +A
Sbjct: 259 YDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAE-AHFEKAV-GR 316
Query: 168 DPAGQFNLGISYLQ--------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQE 219
+ A + LG Y + ++A+ L A+ G A + +A +G+G +
Sbjct: 317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLN 376
Query: 220 AARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL 273
A + A A + + + Q + AA ++ L
Sbjct: 377 AYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTLAQSTL 430
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 7e-28
Identities = 39/210 (18%), Positives = 62/210 (29%), Gaps = 23/210 (10%)
Query: 113 HGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMY------WEMDKKEAAISLYRQAAVL 166
G + +A + + AA S A G + E + EA SL ++A
Sbjct: 46 VGTRDPAQIKQAE-ATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAE-SLLKKAFAN 103
Query: 167 GDPAGQFNLGISYLQEEAV-------KLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQE 219
G+ L + YLQ + + Q AG+ A L L+R +G +
Sbjct: 104 GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVL-LYRTQGTYDQHLD 162
Query: 220 AARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL------ 273
+AA + Y + P + K M+ G AQ
Sbjct: 163 DVERICKAALNTTDICYVELATVYQKKQQ-PEQQAELLKQMEAGVSRGTVTAQRVDSVAR 221
Query: 274 EHGLGLFTEGEMMKAVVYLELATRAGETAA 303
G + A LE +
Sbjct: 222 VLGDATLGTPDEKTAQALLEKIAPGYPASW 251
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-27
Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 12/171 (7%)
Query: 143 AGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYL------QEEAVKLLYQASIAGH 196
A D A Y+Q A LG Q L + Q + + Y+A+
Sbjct: 10 ANEALKRGDTVTAQ-QNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTS 68
Query: 197 VRAQYQLALCLHRGRG-VDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQ 255
RAQ +L L G + EA +A G + ++ Y +
Sbjct: 69 PRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNA 128
Query: 256 ARKWMKRAADCGHGKAQLEHGLGLFTEG---EMMKAVVYLELATRAGETAA 303
++ + A G+ +A L L T+G + + V + A
Sbjct: 129 QQQISQWQAA-GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDIC 178
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 9e-13
Identities = 26/136 (19%), Positives = 40/136 (29%), Gaps = 14/136 (10%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
A L G+ ++ G + KALD L A G A ++ + D
Sbjct: 319 AADYYL--GQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLN 376
Query: 155 AAISLYRQAAVLGDPAGQFNLGISYLQ------EEAVKLLYQASIAGHVRAQYQLALCLH 208
A + A P E +L+ Q A AQ L L
Sbjct: 377 A-YVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTLAQSTLQLHAL 435
Query: 209 RGRGVDFNLQEAARWY 224
+ + +L E +
Sbjct: 436 QEEDGEESLLEHHHHH 451
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 1e-39
Identities = 37/200 (18%), Positives = 65/200 (32%), Gaps = 18/200 (9%)
Query: 122 DKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ 181
+ + + A G A + + A ++AA GD L ++
Sbjct: 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR 62
Query: 182 -------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY-- 232
+A +L +A AG + LA L + ++ A AA
Sbjct: 63 NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD 122
Query: 233 --VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH-GKAQL------EHGLGLFTEG 283
V A L Y+ G P +A ++ K ++ G A+ + G F E
Sbjct: 123 AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEP 182
Query: 284 EMMKAVVYLELATRAGETAA 303
KA+ +L ++ G
Sbjct: 183 NKQKALHWLNVSCLEGFDTG 202
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 4e-35
Identities = 34/192 (17%), Positives = 61/192 (31%), Gaps = 26/192 (13%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW----EMDKKEA 155
A L + + KA K AA+G A+ + + D +A
Sbjct: 19 RAQYYL--ADTWVSS----GDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQA 72
Query: 156 AISLYRQAAVLGDPAGQFNLGISYLQ--------EEAVKLLYQASIAGH----VRAQYQL 203
L +A G +G+ L + A+ LL A+ V AQ L
Sbjct: 73 -RQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLL 131
Query: 204 ALCLHRGRGVDFNLQEAARWYLRAAE-GGYVRAMYNTSLCYSFGEGL--PLSHRQARKWM 260
L G + +A+ ++ ++ A Y + + GE + ++A W+
Sbjct: 132 GLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWL 191
Query: 261 KRAADCGHGKAQ 272
+ G
Sbjct: 192 NVSCLEGFDTGC 203
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 8e-24
Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 24/159 (15%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
+A+ LL + + + +A K GS + + D
Sbjct: 51 DALALL--AQLKIRN-PQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAH 107
Query: 155 AAISLYRQAAVLGDPAG----QFNLGISYLQ--------EEAVKLLYQASIAGHV-RAQY 201
A I+L + AA + Q LG+ Y +A + +S A+Y
Sbjct: 108 A-ITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEY 166
Query: 202 QLALCLHRGRG--VDFNLQEAARWYLRAAEGGYVRAMYN 238
+ +G ++ N Q+A W + G+
Sbjct: 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEE 205
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-14
Identities = 19/131 (14%), Positives = 47/131 (35%), Gaps = 24/131 (18%)
Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDA----GLMYW-----EM 150
++L + + + ++ A+ A + A VDA GL+Y
Sbjct: 86 SGEIVL--ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE 143
Query: 151 DKKEAAISLYRQAAVLGDPA-GQFNLGISYLQ----------EEAVKLLYQASIAGHVRA 199
D +A+ ++ ++ L ++ G+ + Q ++A+ L + + G
Sbjct: 144 DDVKAS-EYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTG 202
Query: 200 QYQLALCLHRG 210
+ + +G
Sbjct: 203 CEEFDR-ISKG 212
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 2e-35
Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 4/127 (3%)
Query: 156 AISLYRQAAVLGDPAGQFNLGISYLQ--EEAVKLLYQASIAGHVRAQYQLALCLHRGRGV 213
AI Y +A L + G +L + ++ + L +A L G+ V
Sbjct: 14 AIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYV 73
Query: 214 DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL 273
+L++AA++Y +A G+G+ + +QA K ++A G A
Sbjct: 74 KKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDAC- 132
Query: 274 EHGLGLF 280
L +
Sbjct: 133 -GILNNY 138
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 4e-14
Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 14/103 (13%)
Query: 207 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 266
+ G V +L++A ++Y++A E + + ++ ++ +++ +A +
Sbjct: 1 MVGGGTVKKDLKKAIQYYVKACELNEMFGCLS------LVSNSQINKQKLFQYLSKACEL 54
Query: 267 GHGKAQLEHGLGLF-TEGE-----MMKAVVYLELATRAGETAA 303
G LG F G+ + KA Y A +
Sbjct: 55 NSGNGC--RFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDG 95
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 1e-11
Identities = 21/126 (16%), Positives = 33/126 (26%), Gaps = 60/126 (47%)
Query: 113 HGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQ 172
+G+ V+K+L KA + Y +A L D G
Sbjct: 69 NGKYVKKDLRKA---------------------AQY-----------YSKACGLNDQDGC 96
Query: 173 FNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY 232
LG G+GV N ++A + + +A G
Sbjct: 97 LILGYKQYA----------------------------GKGVVKNEKQAVKTFEKACRLGS 128
Query: 233 VRAMYN 238
A
Sbjct: 129 EDACGI 134
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 29/136 (21%), Positives = 46/136 (33%), Gaps = 23/136 (16%)
Query: 115 RGV----RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP- 169
GV +K+ ALD+F + + G MY + A + ++ D
Sbjct: 12 EGVLAADKKDWKGALDAFSA-VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR-DKH 69
Query: 170 --AGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 227
F G+ Y Q E Y +I + AL RG + ++ L A
Sbjct: 70 LAVAYFQRGMLYYQTE----KYDLAI-----KDLKEALIQLRGNQLIDYKILGLQFKLFA 120
Query: 228 AEGGYVRAMYNTSLCY 243
E +YN + Y
Sbjct: 121 CE-----VLYNIAFMY 131
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 3e-04
Identities = 34/146 (23%), Positives = 50/146 (34%), Gaps = 28/146 (19%)
Query: 113 HGRGV----RKNLDKALDSFLKGAARGSTLAMVDA----GLMYWEMDKKEAAISLYRQAA 164
+ LD++ + LA +A G +Y E + + AI YR A
Sbjct: 37 LLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA--EAYSNLGNVYKERGQLQEAIEHYRHAL 94
Query: 165 VL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA---GHVRAQYQLALCLHR-GRGVD 214
L G NL + + E AV+ A + + L L GR
Sbjct: 95 RLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA-LQYNPDLYCVRSDLGNLLKALGR--- 150
Query: 215 FNLQEAARWYLRAAE--GGYVRAMYN 238
L+EA YL+A E + A N
Sbjct: 151 --LEEAKACYLKAIETQPNFAVAWSN 174
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 6e-04
Identities = 20/136 (14%), Positives = 40/136 (29%), Gaps = 24/136 (17%)
Query: 119 KNLDKALDSFLKGAARGSTLAMVDA----GLMYWEMDKKEAAISLYRQAAVL--GDPAGQ 172
+++ A+ +++ L G + + + E A + Y +A
Sbjct: 115 GDMEGAVQAYVSALQYNPDLY--CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172
Query: 173 FNLGISYLQ----EEAVKLLYQASIA---GHVRAQYQLALCLHR-GRGVDFNLQEAARWY 224
NLG + A+ ++ ++ + A L L A Y
Sbjct: 173 SNLGCVFNAQGEIWLAIH-HFEKAVTLDPNFLDAYINLGNVLKEARI-----FDRAVAAY 226
Query: 225 LRAAE--GGYVRAMYN 238
LRA + N
Sbjct: 227 LRALSLSPNHAVVHGN 242
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 19/120 (15%), Positives = 30/120 (25%), Gaps = 14/120 (11%)
Query: 120 NLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175
+ + L +A + M A ++ L G P L
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 176 GISYLQE---EAVKLLYQASIA---GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 229
G + +L Q + H L L + AA Y RA +
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG----QAEAAAAAYTRAHQ 119
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 4e-04
Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 13/119 (10%)
Query: 119 KNLDKALDSFLK--------GAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPA 170
K L++A D++L+ + + A AG+M ++ + A+ +A+V+
Sbjct: 50 KQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN 109
Query: 171 GQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 229
G + L L + YQ A + L++AA +A+
Sbjct: 110 GTPDTAAMALDRAGK--LMEPLDLSKAVHLYQQAAAVFENEE---RLRQAAELIGKASR 163
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 4e-04
Identities = 20/146 (13%), Positives = 39/146 (26%), Gaps = 27/146 (18%)
Query: 119 KNLDKALDSFLKGAAR---GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQF 173
D+A+ ++ AAR G+ L + G+ + ++ A + + L DP
Sbjct: 421 GEHDQAISAYTT-AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLN 479
Query: 174 NLGISYLQ----EEAVKLLYQA---------SIAGHVRAQYQLALCLHR-GRGVDFNLQE 219
LG+ + A+ A + L +
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM-----YDA 534
Query: 220 AARWYLRAAE--GGYVRAMYNTSLCY 243
A + +L Y
Sbjct: 535 AIDALNQGLLLSTNDANVHTAIALVY 560
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 4e-04
Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 26/139 (18%)
Query: 118 RKNLDKALDSFLKGAARGSTLAMVDA----GLMYWEMDKKEAAISLYRQAAVL--GDPAG 171
R N ++A K + A DA +++ + + A YR+A +
Sbjct: 50 RGNTEQAKVPLRKALEIDPSSA--DAHAALAVVFQTEMEPKLADEEYRKALASDSRNARV 107
Query: 172 QFNLGISYLQ----EEAVKLLYQASIA-----GHVRAQYQLALCLHR-GRGVDFNLQEAA 221
N G + EEA + L +A R L L + + +A
Sbjct: 108 LNNYGGFLYEQKRYEEAYQRLLEA-SQDTLYPERSRVFENLGLVSLQMKK-----PAQAK 161
Query: 222 RWYLRAAE--GGYVRAMYN 238
++ ++
Sbjct: 162 EYFEKSLRLNRNQPSVALE 180
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 6e-04
Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 28/169 (16%)
Query: 144 GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--- 194
GL Y + E A R+A + L + + + A + Y+ ++A
Sbjct: 44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADE-EYRKALASDS 102
Query: 195 GHVRAQYQLALCLH-RGRGVDFNLQEAARWYLRAAEG----GYVRAMYNTSLCYS-FGEG 248
+ R L+ + R +EA + L A++ R N L +
Sbjct: 103 RNARVLNNYGGFLYEQKR-----YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK- 156
Query: 249 LPLSHRQARKWMKRA--ADCGHGKAQLEHGLGLFTEGEMMKAVVYLELA 295
QA+++ +++ + LE L+ E E + A Y +L
Sbjct: 157 ----PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLF 201
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 6e-04
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 16/96 (16%)
Query: 144 GLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYLQ----EEAVKLLYQASIA--- 194
L + + + +++A L P ++ G Y + A + +Q + +
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE-DFQKAQSLNP 341
Query: 195 GHVRAQYQLALCLHR-GRGVDFNLQEAARWYLRAAE 229
+V QLA L++ G+ E+ ++
Sbjct: 342 ENVYPYIQLACLLYKQGK-----FTESEAFFNETKL 372
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 8e-04
Identities = 24/187 (12%), Positives = 49/187 (26%), Gaps = 29/187 (15%)
Query: 144 GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--- 194
+ Y A + A + Y ++A + ++ +++
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQE-SFRQALSIKP 73
Query: 195 GHVRAQYQL--ALCLHRGRGVDFNLQEAARWYLRAAEG----GYVRAMYNTSLCY-SFGE 247
LC R E+ ++ +A A N +C G+
Sbjct: 74 DSAEINNNYGWFLCGRLNR-----PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ 128
Query: 248 GLPLSHRQARKWMKRA--ADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH 305
A ++KR+ A A E G++ A Y + E
Sbjct: 129 -----FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD 183
Query: 306 VKNVILQ 312
+ +
Sbjct: 184 DLLLGWK 190
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 144 GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQA-SIA-G 195
G + + + A++ Y AA L G +G+ Y + A + QA SIA
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE 191
Query: 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 229
+++ + + + A +W+L A E
Sbjct: 192 DPFVMHEVGVVAFQNG----EWKTAEKWFLDALE 221
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 9e-04
Identities = 26/187 (13%), Positives = 50/187 (26%), Gaps = 39/187 (20%)
Query: 139 AMVDAGLMYWEMDKKEAAISLYRQA------------------AVLGDPAGQFNLGISYL 180
M+ E + A+S +RQ L ++Y
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65
Query: 181 Q----EEAVKLLYQASIA---GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GG 231
+ ++A Y+ + +V A RG ++A R Y + +
Sbjct: 66 KNRNYDKAYL-FYKELLQKAPNNVDCLEACAEMQVC-RG---QEKDALRMYEKILQLEAD 120
Query: 232 YVRAMYNT-SLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKA 288
+ A + Y E ++ + + A+ GL KA
Sbjct: 121 NLAANIFLGNYYYLTAE----QEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKA 176
Query: 289 VVYLELA 295
L+
Sbjct: 177 RNSLQKV 183
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 336 | |||
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 100.0 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 100.0 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 100.0 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 100.0 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.97 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.97 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.97 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.96 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.91 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.9 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.87 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.85 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.85 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.85 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.84 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.84 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.84 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.83 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.83 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.82 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.82 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.81 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.81 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.81 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.8 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.8 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.79 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.79 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.79 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.77 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.77 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.76 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.76 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.76 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.75 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.75 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.75 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.75 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.74 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.74 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.73 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.73 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.71 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.7 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.7 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.68 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.68 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.67 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.66 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.65 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.65 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.64 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.64 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.64 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.64 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.63 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.63 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.63 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.6 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.6 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.57 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.56 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.55 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.55 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.55 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.54 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.54 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.53 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.52 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.52 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.49 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.46 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.46 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.45 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.44 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.43 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.43 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.43 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.42 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.42 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.42 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.41 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.38 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.38 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.38 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.38 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.37 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.32 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.32 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.31 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.3 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.3 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.3 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.29 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.28 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.27 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.27 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.26 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.26 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.26 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.25 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.24 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.22 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.21 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.21 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.2 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.2 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.2 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.19 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.19 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.16 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.16 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.16 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.15 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.14 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.13 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.13 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.13 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.13 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.12 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.12 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.11 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.09 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.09 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.08 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.07 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.05 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.05 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.04 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.02 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.02 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.02 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.02 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.01 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.01 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.0 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.99 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.99 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.98 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.98 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.97 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.96 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.96 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.96 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.96 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.96 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.94 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.93 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.93 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.9 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.9 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.9 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.89 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.89 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.89 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.89 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.88 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.86 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.85 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.83 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.81 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.77 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.75 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.74 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.72 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.72 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.71 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.71 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.7 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.7 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.69 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.69 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.68 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.66 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.66 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.65 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.59 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.51 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.46 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.42 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.4 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.39 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.37 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.24 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.2 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.08 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.07 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.03 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.03 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.01 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.0 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.91 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.81 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.77 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.77 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.76 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.74 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.72 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.63 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.46 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.45 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.39 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.29 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.14 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 96.88 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 96.88 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.45 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.16 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.7 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.68 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.62 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.68 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.57 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.45 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.97 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 93.32 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 91.83 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 91.63 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 89.88 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.09 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 88.25 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 86.21 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 85.07 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.02 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 84.76 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 82.4 |
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-34 Score=267.14 Aligned_cols=253 Identities=18% Similarity=0.163 Sum_probs=231.2
Q ss_pred CChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHH--HHHHHHHhcC----
Q 019734 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAM--VDAGLMYWEM---- 150 (336)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~--~~lg~~~~~~---- 150 (336)
..+.++++......+.+.+.. +++.+++.||.+|.. .|+.+++++|+.||+++++.+++.+. ++||.+|..+
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~-~~~~a~~~Lg~~~~~-~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALN-TTDICYVELATVYQK-KQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTT-TCTTHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSS
T ss_pred cCCCcccCHHHHHHHHHHHHc-CCHHHHHHHHHHHHH-cCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 334455555555556555443 577799999999999 77777999999999999999877776 9999999887
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 019734 151 DKKEAAISLYRQAAVLGDPAGQFNLGISYLQ-------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARW 223 (336)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~-------~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~ 223 (336)
+|+++|+.+|++++ .+++.++++||.+|.. ++|+.+|+++++.+++.++++||.+|..|.|+.+|+++|+.|
T Consensus 231 ~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAH 309 (452)
T ss_dssp CCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 89999999999999 9999999999999663 999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHcC
Q 019734 224 YLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAG 299 (336)
Q Consensus 224 ~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~A~~~~ 299 (336)
|++|+ .+++.++++||.+|..|.|+++|+++|+.||+++++.|++.++++||.+|.. ..|+++|..||++|++.|
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 99999 9999999999999999999999999999999999999999999999999885 459999999999999999
Q ss_pred cHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCC
Q 019734 300 ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMP 333 (336)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 333 (336)
++.+...+..+...+++.++++++.++++|++.+
T Consensus 389 ~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 389 TPEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-31 Score=251.55 Aligned_cols=248 Identities=25% Similarity=0.316 Sum_probs=170.8
Q ss_pred ChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----CCCH
Q 019734 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----MDKK 153 (336)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~----~~~~ 153 (336)
.+++.+|.. |++.+.+.+++.+++.||.+|..|.|+.+|+++|+.||++|++.+++.+++.||.+|.. .+++
T Consensus 56 ~~~~~~A~~----~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMD----WFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHH----HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHH----HHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 566777753 33333334677777777777777777777777777777777777777777777777776 5677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 019734 154 EAAISLYRQAAVLGDPAGQFNLGISYLQ--------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 225 (336)
Q Consensus 154 ~~A~~~~~~a~~~~~~~a~~~Lg~~~~~--------~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~ 225 (336)
++|+.+|+++++.+++.++++||.+|.. ++|+.+|+++++.+++.++++||.+|..|.|+.+|+++|+.||+
T Consensus 132 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 132 AESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 7777777777777777777777777764 67777777777777777777777777777777777777777777
Q ss_pred HHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHcCcH
Q 019734 226 RAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGET 301 (336)
Q Consensus 226 ~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~A~~~~~~ 301 (336)
++++.+++.+++.||.+|..|.|+.+++++|+.||+++++.+++.++++||.+|.. .+++++|+.||+++++.+++
T Consensus 212 ~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~ 291 (490)
T 2xm6_A 212 KSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNS 291 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 77777777777777777766666666777777777777666666666666666666 66666666666666666666
Q ss_pred HHHHHHHHHHhhc---ChhcHHHHHHHHHHh
Q 019734 302 AADHVKNVILQQL---SATSRDRAMLVVDSW 329 (336)
Q Consensus 302 ~a~~~~~~~~~~~---~~~~~~~a~~~~~~~ 329 (336)
.+...++.++... .+.+.++|....++.
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 6666666665543 124455555544443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-31 Score=232.57 Aligned_cols=246 Identities=20% Similarity=0.248 Sum_probs=229.6
Q ss_pred hHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 019734 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAG 144 (336)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg 144 (336)
+......+..++..+++++|...+.+..+ .+++.+++.||.+|..|.|+.+++++|+.+|+++++.+++.+++.+|
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44556677777888999999877777666 45899999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 019734 145 LMYWE----MDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ--------EEAVKLLYQASIAGHVRAQYQLALCLHRGRG 212 (336)
Q Consensus 145 ~~~~~----~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~--------~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g 212 (336)
.+|.. .+++++|+.+|+++++.+++.++++||.+|.. ++|+.+|+++++.+++.+++++|.+|..|.+
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~ 161 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRG 161 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCC
Confidence 99999 99999999999999999999999999999986 9999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCHHHH
Q 019734 213 VDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKA 288 (336)
Q Consensus 213 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~----~~~~~~A 288 (336)
+.+++++|+.+|+++++.+++.+++++|.+|..|.++.+++++|+.+|+++++.+++.++++||.+|.. .+++++|
T Consensus 162 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A 241 (273)
T 1ouv_A 162 TPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQA 241 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHH
Confidence 999999999999999999999999999999999888889999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHhhc
Q 019734 289 VVYLELATRAGETAADHVKNVILQQL 314 (336)
Q Consensus 289 ~~~~~~A~~~~~~~a~~~~~~~~~~~ 314 (336)
+.+|++|++.+++.+...+..+....
T Consensus 242 ~~~~~~a~~~~~~~a~~~l~~~~~~~ 267 (273)
T 1ouv_A 242 IENFKKGCKLGAKGACDILKQLKIKV 267 (273)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999887664443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-31 Score=249.47 Aligned_cols=250 Identities=18% Similarity=0.196 Sum_probs=225.8
Q ss_pred ChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----CCCH
Q 019734 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----MDKK 153 (336)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~----~~~~ 153 (336)
.+++.+|. .|++++.+.+++.+++.||.+|..|.|+.+|+++|+.+|+++++.+++.+++.||.+|.. .+++
T Consensus 92 ~~~~~~A~----~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 92 PQDYAQAV----IWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp CCCHHHHH----HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHHH----HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 67888885 555555556799999999999999999999999999999999999999999999999988 6899
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 019734 154 EAAISLYRQAAVLGDPAGQFNLGISYLQ--------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 225 (336)
Q Consensus 154 ~~A~~~~~~a~~~~~~~a~~~Lg~~~~~--------~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~ 225 (336)
++|+.+|+++++.+++.+++.||.+|.. ++|+.+|+++++.+++.+++.||.+|..|.|+.+|+++|+.+|+
T Consensus 168 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 168 VMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999986 99999999999999999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-----CCHHHHHHHHHHHHHcCc
Q 019734 226 RAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTE-----GEMMKAVVYLELATRAGE 300 (336)
Q Consensus 226 ~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~-----~~~~~A~~~~~~A~~~~~ 300 (336)
++++.+++.++++||.+|..|.|+.+++++|+.||+++++.+++.++++||.+|... +++++|+.||+++++.++
T Consensus 248 ~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~ 327 (490)
T 2xm6_A 248 QSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD 327 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999998888999999999999999999999999999999887 899999999999999999
Q ss_pred HHHHHHHHHHHhhc-ChhcHHHHHHHHHHhhc
Q 019734 301 TAADHVKNVILQQL-SATSRDRAMLVVDSWRA 331 (336)
Q Consensus 301 ~~a~~~~~~~~~~~-~~~~~~~a~~~~~~~~~ 331 (336)
+.+...++.++... ...+.++|....++..+
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 99999999888765 24467778777766554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=219.93 Aligned_cols=190 Identities=19% Similarity=0.122 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHc
Q 019734 122 DKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ-------EEAVKLLYQASIA 194 (336)
Q Consensus 122 ~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~-------~~A~~~~~ka~~~ 194 (336)
++|+.+|+++++.+++.+++.||.+|...+++++|+.+|+++++.+++.++++||.+|.. ++|+.+|+++++.
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~ 82 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEA 82 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHC
Confidence 467888888888888888888888888888888888888888888888888888888875 8888889999888
Q ss_pred CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-CCH
Q 019734 195 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GHG 269 (336)
Q Consensus 195 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-~~~ 269 (336)
+++.++++||.+|..|.|+.+|+++|+.||+++++.++ +.++++||.+|..|.|+++|+++|+.||+++++. +++
T Consensus 83 g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 162 (212)
T 3rjv_A 83 GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTG 162 (212)
T ss_dssp TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTT
T ss_pred CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999988 8999999999999988999999999999999997 889
Q ss_pred HHHHHHHHHhhcc-C-----CHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 019734 270 KAQLEHGLGLFTE-G-----EMMKAVVYLELATRAGETAADHVKNVIL 311 (336)
Q Consensus 270 ~a~~~lg~~~~~~-~-----~~~~A~~~~~~A~~~~~~~a~~~~~~~~ 311 (336)
.++++||.+|... | |+++|+.||++|++.|++.++..+..+.
T Consensus 163 ~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~l~ 210 (212)
T 3rjv_A 163 YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRIS 210 (212)
T ss_dssp HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 9999999988753 3 8999999999999999999998887654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-29 Score=217.34 Aligned_cols=233 Identities=15% Similarity=0.159 Sum_probs=216.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCHHHHH
Q 019734 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----MDKKEAAISLYRQAAVLGDPAGQF 173 (336)
Q Consensus 98 ~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a~~ 173 (336)
.+++.+++.+|.+|.. .+++++|+.+|+++++.+++.+++.+|.+|.. .+++++|+.+|+++++.+++.+++
T Consensus 3 ~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 78 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYK----EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCH 78 (273)
T ss_dssp --CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCChHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4689999999999999 48999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHH--------HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019734 174 NLGISYLQ--------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSF 245 (336)
Q Consensus 174 ~Lg~~~~~--------~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 245 (336)
+||.+|.. ++|+.+|+++++.+++.++++||.+|..|.++.+++++|+.+|+++++.+++.+++++|.+|..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 99999986 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhc--ChhcH
Q 019734 246 GEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVKNVILQQL--SATSR 319 (336)
Q Consensus 246 ~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~--~~~~~ 319 (336)
+.++.+++++|+.+|+++++.+++.++++||.+|.. .+++++|+.+|+++++.+++.+...++.++... ...+.
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~ 238 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNE 238 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCH
Confidence 888888999999999999999999999999999999 999999999999999999999999999888762 24567
Q ss_pred HHHHHHHHHhhcCCC
Q 019734 320 DRAMLVVDSWRAMPS 334 (336)
Q Consensus 320 ~~a~~~~~~~~~~~~ 334 (336)
++|....++..+..|
T Consensus 239 ~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 239 KQAIENFKKGCKLGA 253 (273)
T ss_dssp TTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCC
Confidence 778777777665444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-29 Score=209.59 Aligned_cols=185 Identities=18% Similarity=0.133 Sum_probs=175.1
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC----CHHHHHHHHHHHH
Q 019734 89 KSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD----KKEAAISLYRQAA 164 (336)
Q Consensus 89 ~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~----~~~~A~~~~~~a~ 164 (336)
..|++.+.+.+++.+++.||.+|.. .+|+++|+.||++|++.+++.++++||.+|.. + |+++|+.+|++++
T Consensus 6 ~~~~~~aa~~g~~~a~~~lg~~~~~----~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 6 GSQYQQQAEAGDRRAQYYLADTWVS----SGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp THHHHHHHHTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3667777777899999999999999 58999999999999999999999999999998 6 9999999999999
Q ss_pred HcCCHHHHHHHHHHHHH--------HHHHHHHHHHHHcCC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC-C
Q 019734 165 VLGDPAGQFNLGISYLQ--------EEAVKLLYQASIAGH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-G 231 (336)
Q Consensus 165 ~~~~~~a~~~Lg~~~~~--------~~A~~~~~ka~~~~~----~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~-~ 231 (336)
+.+++.++++||.+|.. ++|+.+|+++++.++ +.++++||.+|..|.|+.+|+++|+.||+++++. +
T Consensus 81 ~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 160 (212)
T 3rjv_A 81 EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSR 160 (212)
T ss_dssp HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSC
T ss_pred HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999975 999999999999998 9999999999999999999999999999999998 8
Q ss_pred CHHHHHHHHHHHHcCCC--CcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 019734 232 YVRAMYNTSLCYSFGEG--LPLSHRQARKWMKRAADCGHGKAQLEHGLG 278 (336)
Q Consensus 232 ~~~a~~~lg~~~~~~~g--~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 278 (336)
++.++++||.+|..|.| +++|+++|+.||++|++.|+..++..|+.+
T Consensus 161 ~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~l 209 (212)
T 3rjv_A 161 TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRI 209 (212)
T ss_dssp TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999977 899999999999999999999999998864
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=224.25 Aligned_cols=223 Identities=15% Similarity=0.050 Sum_probs=196.4
Q ss_pred HHHhcCCCh---hHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 019734 71 KIAASFTLP---QLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMY 147 (336)
Q Consensus 71 ~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~ 147 (336)
.+..+...| ++.+|+..+++..+..+. .+..++.||.+|..|.|+.+|+++|+.||++++ .+++.++++||.+|
T Consensus 182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~--~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~ 258 (452)
T 3e4b_A 182 LATVYQKKQQPEQQAELLKQMEAGVSRGTV--TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLL 258 (452)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHH
T ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 333333466 888997555555544333 455559999999999999999999999999999 99999999999994
Q ss_pred h---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccC
Q 019734 148 W---EMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ--------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFN 216 (336)
Q Consensus 148 ~---~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~--------~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~ 216 (336)
+ ..+|+++|+.+|+++++.+++.++++||.+|.. ++|+.||++|+ .+++.++++||.+|..|.|+.+|
T Consensus 259 ~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 259 YDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp HHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCC
T ss_pred HhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcC
Confidence 4 568999999999999999999999999999986 99999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--cCCHHHHHHHHHH
Q 019734 217 LQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT--EGEMMKAVVYLEL 294 (336)
Q Consensus 217 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~--~~~~~~A~~~~~~ 294 (336)
+++|+.||+++++.+++.++++||.+|..|.|+++|..+|..||++|++.|++.+...++.+... ..+..+|....++
T Consensus 338 ~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 338 PQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987654 3477777777776
Q ss_pred HHH
Q 019734 295 ATR 297 (336)
Q Consensus 295 A~~ 297 (336)
...
T Consensus 418 ~~~ 420 (452)
T 3e4b_A 418 ELA 420 (452)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=164.37 Aligned_cols=136 Identities=20% Similarity=0.167 Sum_probs=117.4
Q ss_pred hcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 019734 112 KHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLLYQA 191 (336)
Q Consensus 112 ~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~A~~~~~ka 191 (336)
..|.|+++|+++|+.||+++++.+++.++ ||.+|..++..++|+.||++|++.
T Consensus 2 ~~G~g~~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~------------------------- 54 (138)
T 1klx_A 2 VGGGTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACEL------------------------- 54 (138)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHT-------------------------
T ss_pred CCCcCCccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcC-------------------------
Confidence 46889999999999999999999999998 999999888888777666666555
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHH
Q 019734 192 SIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKA 271 (336)
Q Consensus 192 ~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a 271 (336)
+++.++++||.+|..|.|+.+|+++|+.||++|++.+++.++++||.+|..|.|+++|+++|+.||++|++.|++.+
T Consensus 55 ---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A 131 (138)
T 1klx_A 55 ---NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDA 131 (138)
T ss_dssp ---TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred ---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHH
Confidence 55555566666677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 019734 272 QLEHGL 277 (336)
Q Consensus 272 ~~~lg~ 277 (336)
+++|+.
T Consensus 132 ~~~l~~ 137 (138)
T 1klx_A 132 CGILNN 137 (138)
T ss_dssp HHHC--
T ss_pred HHHHhh
Confidence 988875
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-21 Score=179.58 Aligned_cols=255 Identities=15% Similarity=0.019 Sum_probs=124.4
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc------------
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------------ 134 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~------------ 134 (336)
.....+......|++++|...+.+.++..|+ ++.+++.+|.++.. .+++++|+..|++++..
T Consensus 69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 142 (388)
T 1w3b_A 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPD--FIDGYINLAAALVA----AGDMEGAVQAYVSALQYNPDLYCVRSDLG 142 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HSCSSHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc--hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3344444445556666666666666555444 45555555555554 34444444444444433
Q ss_pred ------------------------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHH
Q 019734 135 ------------------------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEA 184 (336)
Q Consensus 135 ------------------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A 184 (336)
+++.+++.+|.++...|++++|+.+|+++++. +++.+++.+|.++.. ++|
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 23444444444444444444444444444322 344444444444444 445
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHH
Q 019734 185 VKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWM 260 (336)
Q Consensus 185 ~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~ 260 (336)
+..|+++++. +++.+++++|.+|.. .+++++|+.+|+++++. .++.++.++|.+|.. .+++++|+.+|
T Consensus 223 ~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~ 294 (388)
T 1w3b_A 223 VAAYLRALSLSPNHAVVHGNLACVYYE----QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE----KGSVAEAEDCY 294 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH----HSCHHHHHHHH
T ss_pred HHHHHHHHhhCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Confidence 5555554432 344555555555554 45555555555555432 345555555555543 22555555555
Q ss_pred HHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 261 KRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 261 ~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
++++.. .++.++.++|.++...|++++|+.+|+++++..+................++.++|....++..+..|.
T Consensus 295 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 555543 334455555555555555555555555555543322222222222223344555555555555555553
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-21 Score=178.92 Aligned_cols=230 Identities=17% Similarity=0.086 Sum_probs=202.7
Q ss_pred HHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMY 147 (336)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~ 147 (336)
..+......|++++|...+.+.++..|+ ++.+++.+|.+|.. .+++++|+.+|++++.. .+..+++.+|.++
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 213 (388)
T 1w3b_A 140 DLGNLLKALGRLEEAKACYLKAIETQPN--FAVAWSNLGCVFNA----QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL 213 (388)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3444455779999999999998888766 88999999999998 68999999999999987 5789999999999
Q ss_pred hcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHH
Q 019734 148 WEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQE 219 (336)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~ 219 (336)
...|++++|+..|++++.. +++.+++++|.++.. ++|+.+|+++++. .++.+++++|.+|.. .+++++
T Consensus 214 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~ 289 (388)
T 1w3b_A 214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE----KGSVAE 289 (388)
T ss_dssp HTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH----HSCHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHH
Confidence 9999999999999999865 789999999999998 9999999999886 578999999999998 899999
Q ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 019734 220 AARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELA 295 (336)
Q Consensus 220 A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A 295 (336)
|+.+|+++++ +.++.++..+|.++... +++++|+.+|+++++. ++..+++++|.+|...|++++|+.+|+++
T Consensus 290 A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 290 AEDCYNTALRLCPTHADSLNNLANIKREQ----GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTT----TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999976 46899999999999753 3999999999999885 56889999999999999999999999999
Q ss_pred HHcC--cHHHHHHHHHHHhh
Q 019734 296 TRAG--ETAADHVKNVILQQ 313 (336)
Q Consensus 296 ~~~~--~~~a~~~~~~~~~~ 313 (336)
++.. +..+...++.++..
T Consensus 366 ~~~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 366 IRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HTTCTTCHHHHHHHHHHHHH
T ss_pred HhhCCCCHHHHHhHHHHHHH
Confidence 9865 56667677666544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-21 Score=173.81 Aligned_cols=257 Identities=12% Similarity=0.001 Sum_probs=219.1
Q ss_pred HHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDA 143 (336)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~l 143 (336)
...+..+..++..|++++|...+.+.++..|. +..+++.++.++.. .+++++|+.+|++++.. .++.+++.+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF--HASCLPVHIGTLVE----LNKANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHH----hhhHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 35577777788889999999999999998777 66777778888877 58999999999999986 478999999
Q ss_pred HHHHhcCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCc
Q 019734 144 GLMYWEMD-KKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVD 214 (336)
Q Consensus 144 g~~~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~ 214 (336)
|.++...| ++++|+.+|+++++. .++.+++.+|.++.. ++|+.+|+++++. +...+++.+|.+|.. .
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~ 172 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL----T 172 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH----T
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH----H
Confidence 99999999 999999999999865 678999999999988 9999999999875 567899999999998 8
Q ss_pred cCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----------CCHHHHHHHHHHhhc
Q 019734 215 FNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----------GHGKAQLEHGLGLFT 281 (336)
Q Consensus 215 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-----------~~~~a~~~lg~~~~~ 281 (336)
+++++|+.+|+++++. .++.+++.+|.+|... +++++|+.+|++++.. ..+.+++++|.++..
T Consensus 173 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN----GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 9999999999999764 6789999999999763 3999999999999873 336788999999999
Q ss_pred cCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCCC
Q 019734 282 EGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 336 (336)
Q Consensus 282 ~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (336)
.|++++|+.+|++++...+................++.++|....++..+..|.+
T Consensus 249 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence 9999999999999998765443333333444445678899999999999888753
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-19 Score=162.78 Aligned_cols=254 Identities=12% Similarity=-0.014 Sum_probs=138.7
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM 146 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~ 146 (336)
+..+..++..|++++|...+.+.++..|. ++.+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.+
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLA----MGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 44444444555555555555555554443 45555555555555 34555555555555543 244555555555
Q ss_pred HhcCCCHHHHHHHHHHHHHc---------------------------------------------------CCHHHHHHH
Q 019734 147 YWEMDKKEAAISLYRQAAVL---------------------------------------------------GDPAGQFNL 175 (336)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~---------------------------------------------------~~~~a~~~L 175 (336)
+...|++++|+.+|+++++. +++.++..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 55555555555555555433 344444445
Q ss_pred HHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHH----------
Q 019734 176 GISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMY---------- 237 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~---------- 237 (336)
|.++.. ++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .+..++.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHH
Confidence 555444 5555555555443 345555555555555 45555666665555432 3333322
Q ss_pred --HHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CH----HHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHH
Q 019734 238 --NTSLCYSFGEGLPLSHRQARKWMKRAADCG--HG----KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNV 309 (336)
Q Consensus 238 --~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~--~~----~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~ 309 (336)
.+|.++... +++++|+.+|++++... ++ .++..+|.++...|++++|+.+|+++++..+.........
T Consensus 237 ~~~~a~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 312 (359)
T 3ieg_A 237 LIESAEELIRD----GRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHT----TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 224444432 26666666666666542 22 2345677788888888888888888877644333333333
Q ss_pred HHhhcChhcHHHHHHHHHHhhcCCCCC
Q 019734 310 ILQQLSATSRDRAMLVVDSWRAMPSLH 336 (336)
Q Consensus 310 ~~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (336)
.......++.++|....++..+..|.+
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 333344567777888888887777753
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-20 Score=156.52 Aligned_cols=186 Identities=15% Similarity=0.018 Sum_probs=149.3
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
++.+++.+|.++.. .+++++|+..|++++.. +++.+++.+|.++...|++++|+..|+++++. +++.+++++
T Consensus 4 ~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 4 AEQNPLRLGVQLYA----LGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp CCHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 67899999999998 68999999999999987 58999999999999999999999999999854 789999999
Q ss_pred HHHHH-------------H--HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC-CCHHHHH
Q 019734 176 GISYL-------------Q--EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVRAMY 237 (336)
Q Consensus 176 g~~~~-------------~--~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~ 237 (336)
|.++. . ++|+..|+++++. +++.+++++|.+|.. .+++++|+.+|+++++. +++.+++
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL----LGERDKAEASLKQALALEDTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchHHHH
Confidence 99985 3 7899999999774 688999999999988 78999999999998544 6788899
Q ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 238 NTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 238 ~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
++|.+|... +++++|+.+|+++++. +++.+++++|.++...|++++|+.+|+++-.
T Consensus 156 ~la~~~~~~----g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 156 ALAELYLSM----GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHH----TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHc----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 999998653 3899999999999874 6788889999999999999999999887643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-20 Score=171.18 Aligned_cols=219 Identities=13% Similarity=0.030 Sum_probs=188.4
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
..+..+..++..|++++|+..+.+.++..|+ ++.+++.+|.+|.. .+++++|+.+|++++.. .++.+++.+|
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPG--DAEAWQFLGITQAE----NENEQAAIVALQRCLELQPNNLKALMALA 140 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4677788888999999999999999998877 89999999999999 68999999999999987 5799999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcC--CHHHH----------HHHHHHHHH----HHHHHHHHHHHHc--C--CHHHHHHHH
Q 019734 145 LMYWEMDKKEAAISLYRQAAVLG--DPAGQ----------FNLGISYLQ----EEAVKLLYQASIA--G--HVRAQYQLA 204 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~--~~~a~----------~~Lg~~~~~----~~A~~~~~ka~~~--~--~~~a~~~lg 204 (336)
.+|...|++++|+.+|+++++.. ++.++ ..+|.++.. ++|+.+|+++++. . ++.+++++|
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999998652 22233 345777776 9999999999875 3 789999999
Q ss_pred HHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhh
Q 019734 205 LCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLF 280 (336)
Q Consensus 205 ~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~ 280 (336)
.+|.. .+++++|+.+|+++++ +.++.+++++|.+|... +++++|+.+|++++.. +++.+++++|.+|.
T Consensus 221 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 221 VLFHL----SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANG----DRSEEAVEAYTRALEIQPGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 99998 8999999999999976 46899999999999763 3999999999999985 56889999999999
Q ss_pred ccCCHHHHHHHHHHHHHcC
Q 019734 281 TEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 281 ~~~~~~~A~~~~~~A~~~~ 299 (336)
..|++++|+.+|+++++..
T Consensus 293 ~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHTCCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999753
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.4e-20 Score=162.32 Aligned_cols=229 Identities=15% Similarity=0.110 Sum_probs=202.1
Q ss_pred HHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcC-CHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019734 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRK-NLDKALDSFLKGAAR--GSTLAMVDAGLM 146 (336)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~-~~~~A~~~~~~A~~~--~~~~a~~~lg~~ 146 (336)
..+..++..|++++|...+.+.++..+. ++.+++.+|.++.. .+ ++++|+.+|++++.. .++.+++.+|.+
T Consensus 61 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 134 (330)
T 3hym_B 61 VHIGTLVELNKANELFYLSHKLVDLYPS--NPVSWFAVGCYYLM----VGHKNEHARRYLSKATTLEKTYGPAWIAYGHS 134 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTT--STHHHHHHHHHHHH----SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 3444556779999999999999998776 78999999999998 57 999999999999987 478999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHH
Q 019734 147 YWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQ 218 (336)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~ 218 (336)
+...|++++|+..|+++++. ++..+++.+|.++.. ++|+.+|+++++. .++.+++.+|.+|.. .++++
T Consensus 135 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~ 210 (330)
T 3hym_B 135 FAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ----NGEWK 210 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHH
T ss_pred HHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cccHH
Confidence 99999999999999999875 678899999999998 9999999999875 588999999999998 89999
Q ss_pred HHHHHHHHHHH-----------CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCH
Q 019734 219 EAARWYLRAAE-----------GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEM 285 (336)
Q Consensus 219 ~A~~~~~~a~~-----------~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~ 285 (336)
+|+.+|+++++ .....+++.+|.+|... +++++|+.+|++++.. .++.+++++|.++...|++
T Consensus 211 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 286 (330)
T 3hym_B 211 TAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL----KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNF 286 (330)
T ss_dssp HHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccH
Confidence 99999999976 45578999999999763 3999999999999985 5688999999999999999
Q ss_pred HHHHHHHHHHHHcC--cHHHHHHHHHHHh
Q 019734 286 MKAVVYLELATRAG--ETAADHVKNVILQ 312 (336)
Q Consensus 286 ~~A~~~~~~A~~~~--~~~a~~~~~~~~~ 312 (336)
++|..+|+++++.. ++.+...++.++.
T Consensus 287 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 287 ENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp HHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 99999999999864 5677777776654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-19 Score=165.50 Aligned_cols=185 Identities=15% Similarity=0.068 Sum_probs=116.9
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
..+..+..++..|++.+|+..+.+.++..|. ++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLA----MGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3456666667778888888777777776555 67788888888877 47888888888887775 4677778888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc--CCH---HHHHHH------------HHHHHH----HHHHHHHHHHHHc--CCHHHHH
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL--GDP---AGQFNL------------GISYLQ----EEAVKLLYQASIA--GHVRAQY 201 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~---~a~~~L------------g~~~~~----~~A~~~~~ka~~~--~~~~a~~ 201 (336)
.+|...|++++|+.+|+++++. .++ .++..+ |.++.. ++|+.+|+++++. .++.+++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 8888888888888888877754 333 444444 333433 6666666666543 3555555
Q ss_pred HHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 019734 202 QLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 265 (336)
Q Consensus 202 ~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~ 265 (336)
.+|.+|.. .+++++|+.+|++++. +.++.+++.+|.+|... +++++|+.+|++++.
T Consensus 182 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 182 LRAECFIK----EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL----GDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHH----TTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHH
Confidence 56655555 4555555555555532 34555555555555432 155555555555544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-19 Score=164.61 Aligned_cols=236 Identities=12% Similarity=0.024 Sum_probs=201.2
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
..+..+..++..|++.+|...+.+.++..|. ++.+++.+|.+|.. .+++++|+.+|++++.. .++.+++.+|
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 139 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK--HMEAWQYLGTTQAE----NEQELLAISALRRCLELKPDNQTALMALA 139 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----CcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3567777788999999999999999988766 89999999999999 68999999999999987 5899999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc--CCHHHHH----------------HHHHHHHH---HHHHHHHHHHHHc--C--CHHH
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQF----------------NLGISYLQ---EEAVKLLYQASIA--G--HVRA 199 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~----------------~Lg~~~~~---~~A~~~~~ka~~~--~--~~~a 199 (336)
.+|...|++++|+.+|+++++. .+...+. .+|.++.. ++|+.+|+++++. . ++.+
T Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 140 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 9999999999999999999875 3333332 46666633 9999999999875 3 6889
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 200 QYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEH 275 (336)
Q Consensus 200 ~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l 275 (336)
++.+|.+|.. .+++++|+.+|++++. +.++.+++.+|.+|... +++++|+.+|++++.. +++.+++++
T Consensus 220 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~l 291 (368)
T 1fch_A 220 QCGLGVLFNL----SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG----NQSEEAVAAYRRALELQPGYIRSRYNL 291 (368)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999998 8999999999999975 46789999999999763 3999999999999885 568899999
Q ss_pred HHHhhccCCHHHHHHHHHHHHHcC--c-----------HHHHHHHHHHHhhcCh
Q 019734 276 GLGLFTEGEMMKAVVYLELATRAG--E-----------TAADHVKNVILQQLSA 316 (336)
Q Consensus 276 g~~~~~~~~~~~A~~~~~~A~~~~--~-----------~~a~~~~~~~~~~~~~ 316 (336)
|.+|...|++++|..+|++++... + ..+...++.++..+..
T Consensus 292 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 999999999999999999998753 3 5566666666665533
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-19 Score=165.24 Aligned_cols=256 Identities=11% Similarity=-0.025 Sum_probs=214.2
Q ss_pred hHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CH---HH
Q 019734 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST---LA 139 (336)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~---~a 139 (336)
+......+..++..|++++|...+.+.++..++ ++.+++.+|.+|.. .+++++|+.+|++++... +. .+
T Consensus 60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 133 (450)
T 2y4t_A 60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD--FTAARLQRGHLLLK----QGKLDEAEDDFKKVLKSNPSENEEKEA 133 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 445566777778899999999999999998777 79999999999999 689999999999999874 34 55
Q ss_pred HHHH------------HHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHH
Q 019734 140 MVDA------------GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRA 199 (336)
Q Consensus 140 ~~~l------------g~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a 199 (336)
+..+ |.++...|++++|+.+|+++++. .++.+++.+|.+|.. ++|+.+|+++++. .++.+
T Consensus 134 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 213 (450)
T 2y4t_A 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 5444 77799999999999999999865 689999999999998 9999999999764 78999
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHH------------HHHHHcCCCCcccHHHHHHHHHHHHH
Q 019734 200 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNT------------SLCYSFGEGLPLSHRQARKWMKRAAD 265 (336)
Q Consensus 200 ~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l------------g~~~~~~~g~~~~~~~A~~~~~~a~~ 265 (336)
++.+|.+|.. .+++++|+.+|++++.. .+...+..+ |.++.. .+++++|+.+|++++.
T Consensus 214 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~ 285 (450)
T 2y4t_A 214 FYKISTLYYQ----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR----DGRYTDATSKYESVMK 285 (450)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 9999999998 89999999999999654 566666555 788865 3399999999999988
Q ss_pred cC--C----HHHHHHHHHHhhccCCHHHHHHHHHHHHHcCc--HHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCCC
Q 019734 266 CG--H----GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 336 (336)
Q Consensus 266 ~~--~----~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (336)
.. + ...+..+|.++...|++++|+.+|++++...+ ..+...++.++ ...++.++|...+++..+..|.+
T Consensus 286 ~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~--~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 286 TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY--LIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHTTSSSC
T ss_pred cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHhCcch
Confidence 53 3 23678999999999999999999999998754 45555555444 45678899999999999888864
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=161.23 Aligned_cols=248 Identities=13% Similarity=-0.003 Sum_probs=203.5
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
..+..+...+..|++++|...+.+.++..+. ++.+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la 96 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPE--REEAWRSLGLTQAE----NEKDGLAIIALNHARMLDPKDIAVHAALA 96 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence 3567777788999999999999999998776 89999999999998 58999999999999987 4789999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH--------------HH-HHHH----HHHHHHHHHHHHc--CCHHHHH
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL--------------GI-SYLQ----EEAVKLLYQASIA--GHVRAQY 201 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L--------------g~-~~~~----~~A~~~~~ka~~~--~~~~a~~ 201 (336)
.++...|++++|+.+|+++++. .+...+..+ |. ++.. ++|+.+|+++++. .++.+++
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 176 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHA 176 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Confidence 9999999999999999999865 344444444 44 3333 9999999999875 5789999
Q ss_pred HHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 202 QLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGL 277 (336)
Q Consensus 202 ~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 277 (336)
.+|.+|.. .+++++|+.+|+++++ +.+..++..+|.+|... +++++|+.+|++++.. .+..+++.+|.
T Consensus 177 ~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 248 (327)
T 3cv0_A 177 SLGVLYNL----SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANG----NRPQEALDAYNRALDINPGYVRVMYNMAV 248 (327)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHH----hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999998 8999999999999975 46789999999999763 3999999999999885 56888999999
Q ss_pred HhhccCCHHHHHHHHHHHHHcCc--------------HHHHHHHHHHHhhcChhcHHHHHHHHHHhh
Q 019734 278 GLFTEGEMMKAVVYLELATRAGE--------------TAADHVKNVILQQLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 278 ~~~~~~~~~~A~~~~~~A~~~~~--------------~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 330 (336)
+|...|++++|..+|++++...+ ..+...++.++. ..++.++|....++.+
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN--VMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH--HTTCHHHHHHHTTCCS
T ss_pred HHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Confidence 99999999999999999998643 344444555444 4456677766655443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-20 Score=159.51 Aligned_cols=234 Identities=10% Similarity=0.002 Sum_probs=197.0
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMV 141 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~ 141 (336)
..+..+...+..|++++|+..+.+.++..|. ++.+++.+|.+|.. .+++++|+.+|++++... ...+++
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 78 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN--SPYIYNRRAVCYYE----LAKYDLAQKDIETYFSKVNATKAKSADFE 78 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC--CSTTHHHHHHHHHH----TTCHHHHHHHHHHHHTTSCTTTCCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhccCchhHHHHHHH
Confidence 4567788888999999999999999998776 67789999999998 689999999999999852 256689
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHH-HHHhcCCC
Q 019734 142 DAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLA-LCLHRGRG 212 (336)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg-~~~~~g~g 212 (336)
.+|.++...|++++|+.+|+++++. .++.++..+|.+|.. ++|+.+|+++++. .++.+++++| .+|..
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--- 155 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN--- 155 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH---
Confidence 9999999999999999999999865 788999999999999 9999999999864 6899999999 88876
Q ss_pred CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC------HHHHHHHHHHhh
Q 019734 213 VDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH------GKAQLEHGLGLF 280 (336)
Q Consensus 213 ~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~~------~~a~~~lg~~~~ 280 (336)
+++++|+.+|+++++ +.+..+++.+|.++... |...++++|+.+|+++++. .+ ..++..+|.+|.
T Consensus 156 --~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 156 --KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQ-DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp --TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-STTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc-CcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 499999999999976 46789999999999653 2123388899999999874 22 257889999999
Q ss_pred ccCCHHHHHHHHHHHHHcC--cHHHHHHHHHHHh
Q 019734 281 TEGEMMKAVVYLELATRAG--ETAADHVKNVILQ 312 (336)
Q Consensus 281 ~~~~~~~A~~~~~~A~~~~--~~~a~~~~~~~~~ 312 (336)
..|++++|+.+|+++++.. ++.+...+..+..
T Consensus 233 ~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 9999999999999999864 5566655554433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-19 Score=165.46 Aligned_cols=224 Identities=6% Similarity=-0.078 Sum_probs=151.1
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHc--CCHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDK-KEAAISLYRQAAVL--GDPAGQFN 174 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~-~~~A~~~~~~a~~~--~~~~a~~~ 174 (336)
++.+++.+|.++.. .+++++|+..|++++.. ++..+++.+|.++...|+ +++|+.+|++++.. +++.++++
T Consensus 96 ~~~a~~~lg~~~~~----~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~ 171 (382)
T 2h6f_A 96 FRDVYDYFRAVLQR----DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHH----TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 45667777777766 46777777777777766 467777777777777775 77777777777654 57777777
Q ss_pred HHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcC
Q 019734 175 LGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFG 246 (336)
Q Consensus 175 Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~ 246 (336)
+|.++.. ++|+.+|+++++. ++..+++++|.++.. .+++++|+.+|+++++ +.+..+++++|.+|...
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~----~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 7777776 7777777777664 467777777777776 6677777777777754 45677777777777653
Q ss_pred CCCcccHHHH-----HHHHHHHHHc--CCHHHHHHHHHHhhccC--CHHHHHHHHHHHHHc--CcHHHHHHHHHHHhhcC
Q 019734 247 EGLPLSHRQA-----RKWMKRAADC--GHGKAQLEHGLGLFTEG--EMMKAVVYLELATRA--GETAADHVKNVILQQLS 315 (336)
Q Consensus 247 ~g~~~~~~~A-----~~~~~~a~~~--~~~~a~~~lg~~~~~~~--~~~~A~~~~~~A~~~--~~~~a~~~~~~~~~~~~ 315 (336)
.| ..++| +.+|++++.. ++..+++++|.++...| ++++|+..++++ +. +++.+...++.++..+.
T Consensus 248 ~~---~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 248 TG---YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TC---SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHH
T ss_pred cC---cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHh
Confidence 32 22344 5777777664 55677777777777766 577777777766 33 34455555655555442
Q ss_pred -------hhcHHHHHHHHHHh-hcCCCC
Q 019734 316 -------ATSRDRAMLVVDSW-RAMPSL 335 (336)
Q Consensus 316 -------~~~~~~a~~~~~~~-~~~~~~ 335 (336)
....++|+.+++++ .+..|.
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEKDTI 351 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTTCGG
T ss_pred cccccchHHHHHHHHHHHHHHHHHhCch
Confidence 11246777777777 565553
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.2e-19 Score=169.56 Aligned_cols=258 Identities=10% Similarity=-0.022 Sum_probs=217.4
Q ss_pred hHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHH
Q 019734 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVD 142 (336)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~ 142 (336)
+......+..++..|++++|..++.+..+..++ +..++..++.++.. .+++++|+..|++++.. .++.+++.
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 378 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDPY--NLDVYPLHLASLHE----SGEKNKLYLISNDLVDRHPEKAVTWLA 378 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CCTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc--cHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCcccHHHHHH
Confidence 344566666777889999999999998888766 67778888988887 68999999999998875 57899999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCc
Q 019734 143 AGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVD 214 (336)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~ 214 (336)
+|.+|...|++++|+.+|+++++. .++.+++.+|.+|.. ++|+.+|+++++. ++..++..+|.+|.. .
T Consensus 379 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 454 (597)
T 2xpi_A 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ----L 454 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH----H
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----c
Confidence 999999999999999999999764 689999999999988 9999999999876 478899999999998 8
Q ss_pred cCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc------CC---HHHHHHHHHHhhccC
Q 019734 215 FNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC------GH---GKAQLEHGLGLFTEG 283 (336)
Q Consensus 215 ~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~------~~---~~a~~~lg~~~~~~~ 283 (336)
+++++|+.+|+++++ +.++.++..+|.+|... +++++|+.+|+++++. .+ ..++..+|.+|...|
T Consensus 455 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNK----SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh----CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 999999999999965 46899999999999763 3999999999999875 22 567899999999999
Q ss_pred CHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCCC
Q 019734 284 EMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 336 (336)
Q Consensus 284 ~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (336)
++++|..+|+++++.++.+...+..........++.++|...+++..+..|.+
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 99999999999998765444443444444445678899999999998888763
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=8.5e-20 Score=143.57 Aligned_cols=122 Identities=19% Similarity=0.140 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHH
Q 019734 182 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMK 261 (336)
Q Consensus 182 ~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~ 261 (336)
++|+.+|+++++.+++.++ ||.+|..|. ..++|+.||+++++.+++.++++||.+|..|.|+++|+++|+.||+
T Consensus 12 ~~A~~~~~~aa~~g~~~a~--lg~~y~~g~----~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 85 (138)
T 1klx_A 12 KKAIQYYVKACELNEMFGC--LSLVSNSQI----NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYS 85 (138)
T ss_dssp HHHHHHHHHHHHTTCTTHH--HHHHTCTTS----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHhhh--HHHHHHcCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 6889999999999999888 999999864 4566999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHcCcHHHHHHHHH
Q 019734 262 RAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVKNV 309 (336)
Q Consensus 262 ~a~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~A~~~~~~~a~~~~~~ 309 (336)
+|++.+++.++++||.+|.. .+|+++|+.||++|++.|++.++..++.
T Consensus 86 ~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~~ 137 (138)
T 1klx_A 86 KACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN 137 (138)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC--
T ss_pred HHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHhh
Confidence 99999999999999999999 8999999999999999999999987754
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-19 Score=163.61 Aligned_cols=228 Identities=6% Similarity=-0.149 Sum_probs=192.9
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCC-HHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKN-LDKALDSFLKGAAR--GSTLAMVDAGL 145 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~-~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (336)
...+..+...|++++|+..+.+.++..|+ ++.+++.+|.++.. .++ +++|+.+|++++.. .+..+++++|.
T Consensus 101 ~~lg~~~~~~g~~~~Al~~~~~al~l~P~--~~~a~~~~g~~l~~----~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 101 DYFRAVLQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKS----LQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCcc--CHHHHHHHHHHHHH----cccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 44455556789999999999999999887 89999999999998 465 99999999999987 58999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCH
Q 019734 146 MYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNL 217 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~ 217 (336)
++...|++++|+..|+++++. +++.+++++|.++.. ++|+.+|+++++. ++..+++++|.+|..-. +..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~---~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT---GYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CSC
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---Ccc
Confidence 999999999999999999865 799999999999998 9999999999876 68999999999998711 222
Q ss_pred HHH-----HHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccC-----
Q 019734 218 QEA-----ARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEG----- 283 (336)
Q Consensus 218 ~~A-----~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~----- 283 (336)
++| +.+|++++. +++..+++++|.++.. .| ..++++|+..++++ +. +++.++..||.+|...|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~-~g-~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RG-LSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TC-GGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHc-cC-ccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 555 699999965 5789999999999965 33 23689999999887 43 56788999999998874
Q ss_pred ---C-HHHHHHHHHHH-HHcCcHHHHHHHH
Q 019734 284 ---E-MMKAVVYLELA-TRAGETAADHVKN 308 (336)
Q Consensus 284 ---~-~~~A~~~~~~A-~~~~~~~a~~~~~ 308 (336)
+ +++|+.+|+++ ++.++....++..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~ 358 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRY 358 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHH
Confidence 3 59999999999 8887665555443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-19 Score=163.42 Aligned_cols=221 Identities=13% Similarity=0.021 Sum_probs=180.5
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
++..++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.+|...|++++|+.+|+++++. +++.+++.+
T Consensus 64 ~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLK----EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chhHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 45669999999999 68999999999999986 58999999999999999999999999999865 789999999
Q ss_pred HHHHHH----HHHHHHHHHHHHcC--CH----------HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--C--CHHH
Q 019734 176 GISYLQ----EEAVKLLYQASIAG--HV----------RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--G--YVRA 235 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~~--~~----------~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~--~~~a 235 (336)
|.+|.. ++|+.+|+++++.. +. ..+..+|.++.. .+++++|+.+|++++.. . ++.+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 215 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD----SSVLEGVKELYLEAAHQNGDMIDPDL 215 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------C----CHHHHHHHHHHHHHHHHSCSSCCHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh----hhhHHHHHHHHHHHHHhCcCccCHHH
Confidence 999998 99999999998753 22 233455888887 89999999999999764 4 7899
Q ss_pred HHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCc--HHHHHHHHHHH
Q 019734 236 MYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVIL 311 (336)
Q Consensus 236 ~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~~~~~~ 311 (336)
++++|.+|.. .+++++|+.+|++++.. .++.+++++|.+|...|++++|+.+|+++++..+ ..+...++.+
T Consensus 216 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~- 290 (365)
T 4eqf_A 216 QTGLGVLFHL----SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGIS- 290 (365)
T ss_dssp HHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH-
Confidence 9999999976 34999999999999985 6688999999999999999999999999998754 4455555544
Q ss_pred hhcChhcHHHHHHHHHHhhcCCC
Q 019734 312 QQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
....++.++|....++.++..|
T Consensus 291 -~~~~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 291 -CINLGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp -HHHHTCCHHHHHHHHHHHHHHH
T ss_pred -HHHCCCHHHHHHHHHHHHHhCc
Confidence 4445677888888887776554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-18 Score=164.89 Aligned_cols=252 Identities=10% Similarity=-0.012 Sum_probs=175.7
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
..+..+..++..|++.+|+..+.+.++..| ++.+++.+|.+|.. .+++++|+.+|++++.. +++.+++.+|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 80 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVS----VGDLKKVVEMSTKALELKPDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCc---cHHHHHhHHHHHHH----HhhHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 456677777788888888888888887753 57888888888887 57888888888888876 4778888888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCC--------------------------------------------------------
Q 019734 145 LMYWEMDKKEAAISLYRQAAVLGD-------------------------------------------------------- 168 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~-------------------------------------------------------- 168 (336)
.+|...|++++|+..|++++..+.
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 888888888888888888765432
Q ss_pred -------------------------HHHHHHHHHHHHH-------HHHHHHHHHHHH----------------cCCHHHH
Q 019734 169 -------------------------PAGQFNLGISYLQ-------EEAVKLLYQASI----------------AGHVRAQ 200 (336)
Q Consensus 169 -------------------------~~a~~~Lg~~~~~-------~~A~~~~~ka~~----------------~~~~~a~ 200 (336)
+.+++.+|.++.. ++|+.+|+++++ ..++.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 5566666666542 777888877776 2345677
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 201 YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHG 276 (336)
Q Consensus 201 ~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 276 (336)
+.+|.++.. .+++++|+.+|+++++. . ..+++.+|.+|.... ++++|+.+|++++.. .++.+++.+|
T Consensus 241 ~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~ 311 (514)
T 2gw1_A 241 EHTGIFKFL----KNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRN----DSTEYYNYFDKALKLDSNNSSVYYHRG 311 (514)
T ss_dssp HHHHHHHHH----SSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSS----CCTTGGGHHHHHHTTCTTCTHHHHHHH
T ss_pred HHHHHHHHH----CCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCC----CHHHHHHHHHHHhhcCcCCHHHHHHHH
Confidence 778877777 67788888888777543 3 667777777775422 667777777777654 3456666777
Q ss_pred HHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 277 LGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 277 ~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
.++...|++++|+.+|++++...+................++.++|....++..+..|
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 369 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 7777777777777777777665543333333344444555666666666666655444
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.2e-19 Score=148.24 Aligned_cols=187 Identities=14% Similarity=0.071 Sum_probs=152.4
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019734 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALC 206 (336)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~ 206 (336)
.++.+++.+|.++...|++++|+..|+++++. +++.+++++|.++.. ++|+.+|+++++. +++.+++++|.+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 46788999999999999999999999999865 799999999999998 9999999999875 689999999999
Q ss_pred HhcCCCCc-----------cCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-CCHHHH
Q 019734 207 LHRGRGVD-----------FNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GHGKAQ 272 (336)
Q Consensus 207 ~~~g~g~~-----------~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-~~~~a~ 272 (336)
+.. . +++++|+..|+++++ ++++.+++++|.+|... +++++|+.+|+++++. +++.++
T Consensus 83 ~~~----~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~~~ 154 (217)
T 2pl2_A 83 YVA----LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL----GERDKAEASLKQALALEDTPEIR 154 (217)
T ss_dssp HHH----HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHH----hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc----CChHHHHHHHHHHHhcccchHHH
Confidence 998 7 899999999999965 57899999999999763 3999999999999876 678889
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHh
Q 019734 273 LEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSW 329 (336)
Q Consensus 273 ~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 329 (336)
+++|.+|...|++++|+.+|+++++..+................++.++|...+++.
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999976554444444455556667777777766543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-19 Score=162.87 Aligned_cols=245 Identities=14% Similarity=0.012 Sum_probs=192.3
Q ss_pred CChhHHhhhH-HHHHHHHHhCCCC--CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC
Q 019734 77 TLPQLRAASL-VCKSWNDALRPLR--EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD 151 (336)
Q Consensus 77 ~~~~~~~a~~-~~~~~~~~~~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~ 151 (336)
-.+++.+|+. .+.+.++..+..+ ++.+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++...|
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ----EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 4577888865 5555554444432 35778999999999 68999999999999987 58999999999999999
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHcC--CHHHHH----------------HHHHHH
Q 019734 152 KKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIAG--HVRAQY----------------QLALCL 207 (336)
Q Consensus 152 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~--~~~a~~----------------~lg~~~ 207 (336)
++++|+.+|+++++. +++.+++.+|.+|.. ++|+.+|+++++.. +..++. .+|.++
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999999865 689999999999998 99999999998863 333332 577777
Q ss_pred hcCCCCccCHHHHHHHHHHHHHC--C--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhc
Q 019734 208 HRGRGVDFNLQEAARWYLRAAEG--G--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT 281 (336)
Q Consensus 208 ~~g~g~~~~~~~A~~~~~~a~~~--~--~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 281 (336)
. .+++++|+.+|++++.. . ++.+++.+|.+|... +++++|+.+|++++.. .++.+++++|.++..
T Consensus 193 -~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 193 -S----DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS----GEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN 263 (368)
T ss_dssp -H----HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred -h----cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 4 68999999999999754 4 688999999999763 3999999999999985 568899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 282 EGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 282 ~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
.|++++|+.+|++++...+................++.++|....++..+..|
T Consensus 264 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 264 GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999987654443334444444456778888888887776554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-17 Score=142.48 Aligned_cols=215 Identities=11% Similarity=0.048 Sum_probs=187.9
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--C-------H
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S-------T 137 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~-------~ 137 (336)
.....+...+..|++++|+..+.+.++.. .++.+++.+|.+|.. .+++++|+.+|++++... + +
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYE----KGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 45667777889999999999999999887 478999999999999 689999999999999862 2 6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCc
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVD 214 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~--~~~a~~~lg~~~~~g~g~~ 214 (336)
.+++.+|.++...|++++|+.+|+++++. .....+..+|.. ++|+.+|++++... ++.+++.+|.++.. .
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 152 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNA---EKELKKAEAEAYVNPEKAEEARLEGKEYFT----K 152 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH---HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHH---HHHHHHHHHHHHcCcchHHHHHHHHHHHHH----h
Confidence 89999999999999999999999999976 445555554442 68999999998864 67899999999998 8
Q ss_pred cCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHH
Q 019734 215 FNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVV 290 (336)
Q Consensus 215 ~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~ 290 (336)
+++++|+.+|++++. +.++.+++.+|.+|.... ++++|+.+|++++.. .++.+++.+|.++...|++++|..
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM----SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999975 467999999999997633 999999999999985 568899999999999999999999
Q ss_pred HHHHHHHcC
Q 019734 291 YLELATRAG 299 (336)
Q Consensus 291 ~~~~A~~~~ 299 (336)
+|+++++..
T Consensus 229 ~~~~a~~~~ 237 (258)
T 3uq3_A 229 TLDAARTKD 237 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999999865
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-18 Score=163.99 Aligned_cols=250 Identities=14% Similarity=0.083 Sum_probs=191.0
Q ss_pred HHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDA 143 (336)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~l 143 (336)
......+..++..|++++|+..+.+.++..|+ ++.+++.+|.+|.. .+++++|+.+|++++.. +++.+++.+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 99 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN--EPVFYSNISACYIS----TGDLEKVIEFTTKALEIKPDHSKALLRR 99 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC--CcHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 34577888889999999999999999999877 89999999999998 68999999999999986 589999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH----------------------------------------------------------
Q 019734 144 GLMYWEMDKKEAAISLYRQAAV---------------------------------------------------------- 165 (336)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~---------------------------------------------------------- 165 (336)
|.++...|++++|+..|+ ++.
T Consensus 100 a~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 100 ASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 999999999999988763 221
Q ss_pred ------------------------------------------------------cCCH-------HHHHHHHHHHHH---
Q 019734 166 ------------------------------------------------------LGDP-------AGQFNLGISYLQ--- 181 (336)
Q Consensus 166 ------------------------------------------------------~~~~-------~a~~~Lg~~~~~--- 181 (336)
++++ .+++.+|.++..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 1222 234555555555
Q ss_pred -HHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHH
Q 019734 182 -EEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQAR 257 (336)
Q Consensus 182 -~~A~~~~~ka~~~~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~ 257 (336)
++|+.+|+++++.. .+.+++.+|.+|.. .+++++|+.+|+++++ +.++.++..+|.+|... +++++|+
T Consensus 259 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~ 330 (537)
T 3fp2_A 259 LLDAQVLLQESINLHPTPNSYIFLALTLAD----KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL----QDYKNAK 330 (537)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHTCC----SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHH----hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc----CCHHHHH
Confidence 78888888887652 36788888888877 7888888888888865 46788888888888653 3888888
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCc--HHHHHHHHHHHhhcChhcHHHHHHHHHHhhcC
Q 019734 258 KWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAM 332 (336)
Q Consensus 258 ~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 332 (336)
.+|++++.. .++.+++.+|.++...|++++|..+|+++++..+ +.+...++.++ ...++.++|....++..+.
T Consensus 331 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEIL--TDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH--HHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH--HHhCCHHHHHHHHHHHHHc
Confidence 888888774 4567788888888888888888888888887654 34444444443 3446677777777766543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=151.73 Aligned_cols=222 Identities=13% Similarity=0.035 Sum_probs=188.5
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-----DPAGQ 172 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~ 172 (336)
+++.++.+|.++.. .+++++|+.+|+++++. .++.+++.+|.+|...|++++|+.+|+++++.. .+.++
T Consensus 2 n~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 77 (272)
T 3u4t_A 2 NDDVEFRYADFLFK----NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADF 77 (272)
T ss_dssp ---CHHHHHHHHHT----TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHH
T ss_pred cHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHH
Confidence 45678889999998 68999999999999987 477899999999999999999999999999742 25668
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHH-HHH
Q 019734 173 FNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTS-LCY 243 (336)
Q Consensus 173 ~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg-~~~ 243 (336)
+.+|.++.. ++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++ +.++.+++++| .+|
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN----KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 999999998 9999999999875 588999999999998 8999999999999965 57899999999 888
Q ss_pred HcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCC---HHHHHHHHHHHHHcC---cH-------HHHHHHH
Q 019734 244 SFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGE---MMKAVVYLELATRAG---ET-------AADHVKN 308 (336)
Q Consensus 244 ~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~---~~~A~~~~~~A~~~~---~~-------~a~~~~~ 308 (336)
..+ ++++|+..|+++++. .+..+++.+|.++...++ +++|...|+++++.. +. .+...++
T Consensus 154 ~~~-----~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 228 (272)
T 3u4t_A 154 YNK-----EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA 228 (272)
T ss_dssp HTT-----CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 643 999999999999985 567889999999999998 999999999999753 11 3334444
Q ss_pred HHHhhcChhcHHHHHHHHHHhhcCCCCC
Q 019734 309 VILQQLSATSRDRAMLVVDSWRAMPSLH 336 (336)
Q Consensus 309 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (336)
.++ ...++.++|....++..+..|.+
T Consensus 229 ~~~--~~~~~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 229 YYY--TINRDKVKADAAWKNILALDPTN 254 (272)
T ss_dssp HHH--HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHH--HHcCCHHHHHHHHHHHHhcCccH
Confidence 444 34578999999999999888864
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-18 Score=163.28 Aligned_cols=257 Identities=12% Similarity=0.003 Sum_probs=212.4
Q ss_pred hHHHHHHHHhcCC---ChhHHhhhHHHHHHHH-----H--hCC-----CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHH
Q 019734 65 PFDVLNKIAASFT---LPQLRAASLVCKSWND-----A--LRP-----LREAMVLLRWGKRFKHGRGVRKNLDKALDSFL 129 (336)
Q Consensus 65 ~~~~l~~~~~~~~---~~~~~~a~~~~~~~~~-----~--~~~-----~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~ 129 (336)
+...+..+...+. .|++++|...+.+.++ . .++ ..++.+++.+|.++.. .+++++|+.+|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~ 261 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL----KNDPLGAHEDIK 261 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH----SSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH----CCCHHHHHHHHH
Confidence 3344555555444 8999999999999888 3 111 1257899999999998 689999999999
Q ss_pred HHHHcC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHH
Q 019734 130 KGAARG-STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQ 200 (336)
Q Consensus 130 ~A~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~ 200 (336)
+++... .+.+++.+|.++...|++++|+.+|+++++. .++.+++.+|.++.. ++|+.+|+++++. .++.++
T Consensus 262 ~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 341 (514)
T 2gw1_A 262 KAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPY 341 (514)
T ss_dssp HHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHH
T ss_pred HHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHH
Confidence 999863 2889999999999999999999999999876 678999999999998 9999999999876 478899
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CC------HH
Q 019734 201 YQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GH------GK 270 (336)
Q Consensus 201 ~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~------~~ 270 (336)
..+|.+|.. .+++++|+.+|+++++ +.++.+++.+|.+|.... ++++|+.+|++++.. .+ ..
T Consensus 342 ~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~a~~~~~~~~~~~~~~~ 413 (514)
T 2gw1_A 342 IQLACLAYR----ENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKN----DFDKALKQYDLAIELENKLDGIYVGIA 413 (514)
T ss_dssp HHHHHHTTT----TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHTSSSCSSCSH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHhhhccchHHHHHH
Confidence 999999988 8999999999999975 467899999999997633 999999999999874 33 33
Q ss_pred HHHHHHHHhhc---cCCHHHHHHHHHHHHHcCc--HHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 271 AQLEHGLGLFT---EGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 271 a~~~lg~~~~~---~~~~~~A~~~~~~A~~~~~--~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
+++.+|.++.. .|++++|..+|++++...+ ..+...++.+ ....++.++|....++..+..|.
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQM--KLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHhccc
Confidence 89999999999 9999999999999998754 4444444444 44567788899998888877775
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-18 Score=140.81 Aligned_cols=170 Identities=21% Similarity=0.200 Sum_probs=112.3
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGI 177 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~ 177 (336)
++..++.||.+|.. .|++++|+.+|+++++. .++.+++.+|.+|...|++++|+..+.+++..
T Consensus 4 ~~~iy~~lG~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~----------- 68 (184)
T 3vtx_A 4 TTTIYMDIGDKKRT----KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL----------- 68 (184)
T ss_dssp CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----------
Confidence 45566666666666 46666666666666655 35666666666666666666666666655432
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHH
Q 019734 178 SYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQ 255 (336)
Q Consensus 178 ~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~ 255 (336)
...++.++..+|.++.. .++++.|+..++++.. +.+..++..+|.+|... +++++
T Consensus 69 ---------------~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~----g~~~~ 125 (184)
T 3vtx_A 69 ---------------DTTSAEAYYILGSANFM----IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSM----GEHDK 125 (184)
T ss_dssp ---------------CCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHH
T ss_pred ---------------CchhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHh----CCchh
Confidence 12344555555555555 5677777777777744 45677777777777652 27778
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHH
Q 019734 256 ARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVK 307 (336)
Q Consensus 256 A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~ 307 (336)
|+.+|+++++. .++.+++++|.+|...|++++|+.+|++|++..+.++.+.+
T Consensus 126 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~~l 179 (184)
T 3vtx_A 126 AIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYEL 179 (184)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHHHCS
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHHHHH
Confidence 88888877764 55777788888888888888888888888877766665443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-18 Score=140.60 Aligned_cols=164 Identities=21% Similarity=0.194 Sum_probs=123.3
Q ss_pred hHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHH
Q 019734 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVD 142 (336)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~ 142 (336)
+...+..+..++..|++++|+..+.+.++..|+ ++.+++.+|.+|.. .+++++|+.+++++... .++.++..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 78 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN--NVETLLKLGKTYMD----IGLPNDAIESLKKFVVLDTTSAEAYYI 78 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCchhHHHHHH
Confidence 444567777888999999999999999999887 89999999999999 68999999999999886 58999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCc
Q 019734 143 AGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVD 214 (336)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~ 214 (336)
+|.++...++++.|+..+.+++.. .++.+++.+|.+|.. ++|+.+|+++++. .++.+++++|.+|.. .
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~ 154 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG----K 154 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----T
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH----C
Confidence 999999999999999999998754 566777777766665 5555555555443 345555555555554 4
Q ss_pred cCHHHHHHHHHHHHHCCCHHHHHH
Q 019734 215 FNLQEAARWYLRAAEGGYVRAMYN 238 (336)
Q Consensus 215 ~~~~~A~~~~~~a~~~~~~~a~~~ 238 (336)
+++++|+.+|++|++.....+.++
T Consensus 155 g~~~~A~~~~~~al~~~p~~a~~~ 178 (184)
T 3vtx_A 155 GLRDEAVKYFKKALEKEEKKAKYE 178 (184)
T ss_dssp TCHHHHHHHHHHHHHTTHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCCccCHHHH
Confidence 555555555555554444444333
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=154.35 Aligned_cols=248 Identities=10% Similarity=0.007 Sum_probs=151.0
Q ss_pred HHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 019734 72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD 151 (336)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~ 151 (336)
+...|..|++.+++..+.+|....|+. ...+.+.++.+|.. .++++.|+..++.. ......++..++..+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~-~~e~~~~l~r~yi~----~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPER-DVERDVFLYRAYLA----QRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHH-HHHHHHHHHHHHHH----TTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchh-hHHHHHHHHHHHHH----CCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCC
Confidence 334566677777765554443332220 13455666777766 46777777666542 1123455666777777777
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 019734 152 KKEAAISLYRQAAV----LGDPAGQFNLGISYLQ----EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARW 223 (336)
Q Consensus 152 ~~~~A~~~~~~a~~----~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~ 223 (336)
+.++|+..+++.+. ++++.+++.+|.++.. ++|+.+|++ .+++.++..+|.+|.. .+++++|+..
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~----~g~~~~A~~~ 152 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLK----LDRLDLARKE 152 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHH----CCCHHHHHHH
Confidence 77777777777653 3567777777777776 777777777 5677777777777776 6777777777
Q ss_pred HHHHHHCCCHHHHHHHHHHHH---cCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 224 YLRAAEGGYVRAMYNTSLCYS---FGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 224 ~~~a~~~~~~~a~~~lg~~~~---~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
|+++++.........++..+. .+. +++++|+..|+++++. .++.+++++|.++...|++++|...|++++..
T Consensus 153 l~~~~~~~p~~~~~~l~~a~~~l~~~~---~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQDEDATLTQLATAWVSLAAGG---EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCT---THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCcCcHHHHHHHHHHHHHhCc---hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777765432222223322111 122 2777777777777764 45666777777777777777777777777765
Q ss_pred C--cHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCCC
Q 019734 299 G--ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 336 (336)
Q Consensus 299 ~--~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (336)
. ++++..+++.+...+. ...+.+....+++++.+|.|
T Consensus 230 ~p~~~~~l~~l~~~~~~~g-~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLG-KPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHCTTC
T ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCCC
Confidence 3 4455555554444432 12233556667777666665
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-17 Score=146.36 Aligned_cols=234 Identities=14% Similarity=0.015 Sum_probs=187.9
Q ss_pred HHHHHHHHhcCCChhHHhhhHHHHHHHHHhC---CCCCHHHHHHH------------HHHHhcCCCCcCCHHHHHHHHHH
Q 019734 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALR---PLREAMVLLRW------------GKRFKHGRGVRKNLDKALDSFLK 130 (336)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~a~~~l------------g~~~~~g~g~~~~~~~A~~~~~~ 130 (336)
......+..++..|++++|...+.+.++..+ + +..++..+ |.++.. .+++++|+.+|++
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE--EKEAESQLVKADEMQRLRSQALDAFD----GADYTAAITFLDK 145 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccC--hHHHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHH
Confidence 3445555556677888888877777777655 4 56666666 566666 5788889999988
Q ss_pred HHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHH
Q 019734 131 GAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQ 200 (336)
Q Consensus 131 A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~ 200 (336)
++.. .++.++..+|.++...|++++|+..|+++++. .++.+++.+|.++.. ++|+.+|+++++. ++..++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 225 (359)
T 3ieg_A 146 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 225 (359)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHH
Confidence 8876 57899999999999999999999999999865 789999999999998 9999999999875 455544
Q ss_pred H------------HHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCH----HHHHHHHHHHHcCCCCcccHHHHHHHHHH
Q 019734 201 Y------------QLALCLHRGRGVDFNLQEAARWYLRAAEG--GYV----RAMYNTSLCYSFGEGLPLSHRQARKWMKR 262 (336)
Q Consensus 201 ~------------~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~----~a~~~lg~~~~~~~g~~~~~~~A~~~~~~ 262 (336)
. .+|.++.. .+++++|+.+|+++++. .++ .++..+|.+|... +++++|+.+|++
T Consensus 226 ~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~ 297 (359)
T 3ieg_A 226 AHYKQVKKLNKLIESAEELIR----DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD----EKPVEAIRICSE 297 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc----cCHHHHHHHHHH
Confidence 3 44888887 79999999999999764 344 4466789999763 399999999999
Q ss_pred HHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC--cHHHHHHHHHHHhh
Q 019734 263 AADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQ 313 (336)
Q Consensus 263 a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~~~~~~~~ 313 (336)
++.. +++.+++.+|.++...|++++|..+|+++++.. ++.+...+..+...
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 298 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9985 578899999999999999999999999999875 45555555555443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-17 Score=143.40 Aligned_cols=216 Identities=13% Similarity=0.033 Sum_probs=179.5
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CC-------H
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD-------P 169 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~-------~ 169 (336)
.+.+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++...|++++|+.+|.++++. .+ +
T Consensus 4 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 4 MADKEKAEGNKFYK----ARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 46789999999999 68999999999999876 57899999999999999999999999999865 23 7
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 019734 170 AGQFNLGISYLQ----EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 243 (336)
Q Consensus 170 ~a~~~Lg~~~~~----~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~ 243 (336)
.+++.+|.++.. ++|+.+|+++++.... +.++.. .+++++|+..+++++.. .++.++..+|.++
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT------ADILTK----LRNAEKELKKAEAEAYVNPEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------HHHHHH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCch------hHHHHH----HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 899999999998 9999999999986422 334444 56789999999999776 4678899999999
Q ss_pred HcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHH
Q 019734 244 SFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDR 321 (336)
Q Consensus 244 ~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~ 321 (336)
... +++++|+.+|++++.. .++.+++++|.++...|++++|+.+|+++++..+................++.++
T Consensus 150 ~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 150 FTK----SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp HHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHh----cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHH
Confidence 763 3999999999999985 5688899999999999999999999999998765444433333444444577888
Q ss_pred HHHHHHHhhcCC
Q 019734 322 AMLVVDSWRAMP 333 (336)
Q Consensus 322 a~~~~~~~~~~~ 333 (336)
|....++..+..
T Consensus 226 A~~~~~~a~~~~ 237 (258)
T 3uq3_A 226 ALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 888888877665
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-17 Score=152.78 Aligned_cols=255 Identities=16% Similarity=0.065 Sum_probs=200.6
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCC--CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--------CC
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLR--EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--------GS 136 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--------~~ 136 (336)
.++..+..++..|++.+|+..+.+.++..++.. .+.+++.+|.+|.. .+++++|+.+|++++.. ..
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFY----LGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 345677778899999999999999999866621 13689999999998 68999999999999875 24
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHHH---------------------HHHHHH
Q 019734 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----G----DPAGQFNLGISYLQ---------------------EEAVKL 187 (336)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~~~~---------------------~~A~~~ 187 (336)
..+++.+|.+|...|++++|+.+|+++++. + ...+++++|.+|.. ++|+.+
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 578899999999999999999999999854 2 35688889998875 468888
Q ss_pred HHHHHHc----C----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCcc
Q 019734 188 LYQASIA----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPL 251 (336)
Q Consensus 188 ~~ka~~~----~----~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~g~~~ 251 (336)
|+++++. + ...++.++|.+|.. .+++++|+.+|+++++. ++ ..++.++|.+|... +
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~----g 277 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYL----LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFL----G 277 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT----T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHC----c
Confidence 8888653 2 34588999999998 89999999999999753 23 34889999999753 3
Q ss_pred cHHHHHHHHHHHHHc----CC----HHHHHHHHHHhhccCCHHHHHHHHHHHHHcC----c--HHHHHHHHHHHhhcChh
Q 019734 252 SHRQARKWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRAG----E--TAADHVKNVILQQLSAT 317 (336)
Q Consensus 252 ~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~----~--~~a~~~~~~~~~~~~~~ 317 (336)
++++|+.+|++++.. ++ ..++..+|.+|...|++++|..+|++++... + ..+.............+
T Consensus 278 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 357 (411)
T 4a1s_A 278 QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG 357 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Confidence 999999999999874 22 5677999999999999999999999998752 2 12223333333344457
Q ss_pred cHHHHHHHHHHhhcCC
Q 019734 318 SRDRAMLVVDSWRAMP 333 (336)
Q Consensus 318 ~~~~a~~~~~~~~~~~ 333 (336)
+.++|...+++..+..
T Consensus 358 ~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 358 GHERALKYAEQHLQLA 373 (411)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHH
Confidence 7888888887766543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.4e-17 Score=156.74 Aligned_cols=224 Identities=15% Similarity=0.043 Sum_probs=195.3
Q ss_pred HhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC
Q 019734 73 AASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEM 150 (336)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~ 150 (336)
......|++++|..++....+..++ ++.+++.+|.+|.. .+++++|+.+|+++++. .+..+++.+|.+|...
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 420 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRHPE--KAVTWLAVGIYYLC----VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIE 420 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3345678899999999988877665 89999999999998 68999999999999876 5789999999999999
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHH
Q 019734 151 DKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAAR 222 (336)
Q Consensus 151 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~ 222 (336)
|++++|+.+|+++++. +++.+++.+|.+|.. ++|+.+|+++++. .++.++..+|.+|.. .+++++|+.
T Consensus 421 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 496 (597)
T 2xpi_A 421 GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN----KSDMQTAIN 496 (597)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHH
Confidence 9999999999999865 678999999999988 9999999999875 589999999999998 899999999
Q ss_pred HHHHHHHC-------CC--HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHH
Q 019734 223 WYLRAAEG-------GY--VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVY 291 (336)
Q Consensus 223 ~~~~a~~~-------~~--~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~ 291 (336)
+|+++++. .+ ..++..+|.+|... +++++|+.+|+++++. .++.++..||.+|...|++++|..+
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKL----KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITH 572 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999764 12 67899999999763 3999999999999875 5788999999999999999999999
Q ss_pred HHHHHHcCc--HHHHHHHHHH
Q 019734 292 LELATRAGE--TAADHVKNVI 310 (336)
Q Consensus 292 ~~~A~~~~~--~~a~~~~~~~ 310 (336)
|+++++..+ +.+...++.+
T Consensus 573 ~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 573 LHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHT
T ss_pred HHHHHhcCCCChHHHHHHHHH
Confidence 999998754 4555554443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-17 Score=158.13 Aligned_cols=242 Identities=14% Similarity=0.033 Sum_probs=149.2
Q ss_pred hhHHhhhHHHHHHHHHhCCCCC-----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCC
Q 019734 79 PQLRAASLVCKSWNDALRPLRE-----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDK 152 (336)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~-----~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~ 152 (336)
+++.+|+..+.+.++..|+... +.+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++...|+
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL----KNNLLDAQVLLQESINLHPTPNSYIFLALTLADKEN 291 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC
Confidence 3566676666666666554211 3356666666666 46777777777777765 236667777777777777
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 019734 153 KEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWY 224 (336)
Q Consensus 153 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~ 224 (336)
+++|+.+|+++++. +++.+++.+|.++.. ++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|
T Consensus 292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~ 367 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK----QGKFTESEAFF 367 (537)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Confidence 77777777777653 566777777777766 7777777777654 456677777777766 66777777777
Q ss_pred HHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--C------HHHHHHHHHHhhcc----------CC
Q 019734 225 LRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--H------GKAQLEHGLGLFTE----------GE 284 (336)
Q Consensus 225 ~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~--~------~~a~~~lg~~~~~~----------~~ 284 (336)
+++++ +.++.++..+|.++... +++++|+.+|++++... + ....+.+|.++... |+
T Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 443 (537)
T 3fp2_A 368 NETKLKFPTLPEVPTFFAEILTDR----GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443 (537)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHh----CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH
Confidence 77654 35566777777777542 26777777777766531 1 12245556666666 77
Q ss_pred HHHHHHHHHHHHHcCc--HHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 285 MMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 285 ~~~A~~~~~~A~~~~~--~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
+++|+.+|++++...+ ..+...++.++ ...++.++|...+++..+..|
T Consensus 444 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 444 FNAAIKLLTKACELDPRSEQAKIGLAQLK--LQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHhccHHHHHHHHHHHHHhCC
Confidence 7777777777766543 33333333333 334556666666666655544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-17 Score=156.69 Aligned_cols=181 Identities=18% Similarity=0.065 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHhcCCCCcCCH-HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNL-DKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~-~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~L 175 (336)
++.+++.+|.+|.. .+++ ++|+.+|+++++. .++.+++.+|.+|...|++++|+.+|+++++. .++.++++|
T Consensus 101 ~a~~~~~lg~~~~~----~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l 176 (474)
T 4abn_A 101 EAQALMLKGKALNV----TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNL 176 (474)
T ss_dssp CHHHHHHHHHHHTS----SSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHh----ccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 45555555555544 3455 5555555555544 24455555555555555555555555555443 124444555
Q ss_pred HHHHHH-------------HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCc--------cCHHHHHHHHHHHHH--C
Q 019734 176 GISYLQ-------------EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVD--------FNLQEAARWYLRAAE--G 230 (336)
Q Consensus 176 g~~~~~-------------~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~--------~~~~~A~~~~~~a~~--~ 230 (336)
|.++.. ++|+.+|+++++. +++.+++++|.+|.. . +++++|+.+|++++. +
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~~~g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS----LYFNTGQNPKISQQALSAYAQAEKVDR 252 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HHHhhccccchHHHHHHHHHHHHHhCC
Confidence 554422 4455555554432 344445555554443 2 445555555554432 2
Q ss_pred ---CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHH
Q 019734 231 ---GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYL 292 (336)
Q Consensus 231 ---~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~ 292 (336)
.++.+++++|.+|... +++++|+.+|++++.. +++.++.+++.++...|++++|+..+
T Consensus 253 ~~~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 253 KASSNPDLHLNRATLHKYE----ESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GGGGCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555554331 1455555555554442 33444445555444444444444433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-16 Score=137.46 Aligned_cols=189 Identities=16% Similarity=0.029 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG 176 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 176 (336)
+.+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++...|++++|+.+|+++++. .++.+++.+|
T Consensus 37 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQ----RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHH----TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHH
Confidence 5666777777776 46777888888877765 46777777888887778888888888777654 5677777777
Q ss_pred HHHHH----HHHHHHHHHHHH--c--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcC
Q 019734 177 ISYLQ----EEAVKLLYQASI--A--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFG 246 (336)
Q Consensus 177 ~~~~~----~~A~~~~~ka~~--~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~ 246 (336)
.++.. ++|+.+|+++++ . .+..+++.+|.+|.. .+++++|+.+|+++++ +.+..+++.+|.+|...
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ----MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Confidence 77776 778888887766 2 356788888888887 7899999999999865 45788999999999763
Q ss_pred CCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH
Q 019734 247 EGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 301 (336)
Q Consensus 247 ~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~ 301 (336)
+++++|+.++++++.. .+..++..++.++...|++++|..+++++++..+.
T Consensus 189 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 189 ----REYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp ----TCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ----CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 3899999999999875 56788899999999999999999999999887543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-17 Score=140.14 Aligned_cols=191 Identities=16% Similarity=0.132 Sum_probs=108.2
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM 146 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~ 146 (336)
+..+...+..|++++|...+.+.++..+. ++.+++.+|.+|.. .+++++|+.+|++++.. .+..+++.+|.+
T Consensus 27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 27 GQQMGRGSEFGDYEKAAEAFTKAIEENKE--DAIPYINFANLLSS----VNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------CCTTHHHHHTTCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34444444555555555555544444333 44555555555554 34555555555555443 244555555555
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 019734 147 YWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 226 (336)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~ 226 (336)
+...|++++|+.+|+++++. ...++.+++.+|.++.. .+++++|+.+|++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~ 150 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--------------------------GMENGDLFYMLGTVLVK----LEQPKLALPYLQR 150 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--------------------------TCCSHHHHHHHHHHHHH----TSCHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHH----hccHHHHHHHHHH
Confidence 55555555555555544432 12355566666666666 6777777777777
Q ss_pred HHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 227 AAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 227 a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
+++. .+..+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.+|...|++++|..+|+++++..
T Consensus 151 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 151 AVELNENDTEARFQFGMCLAN----EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH----HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHhCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 7543 567777777777764 23777888888887764 456777888888888888888888888887764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.4e-18 Score=157.56 Aligned_cols=216 Identities=13% Similarity=0.022 Sum_probs=110.7
Q ss_pred cCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC--
Q 019734 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEM-- 150 (336)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~-- 150 (336)
.+..+++++|+..+.+.++..|+ ++.++..+|.++.. .+..++.++|+..|++|++. .++.++..+|..+...
T Consensus 148 ~~~~~~y~~A~~~~~kal~~~p~--~~~~~~~~~~~~~~-l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 224 (472)
T 4g1t_A 148 KCGGNQNERAKVCFEKALEKKPK--NPEFTSGLAIASYR-LDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE 224 (472)
T ss_dssp HHCTTHHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHH-HHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-
T ss_pred HHccccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH-hcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHh
Confidence 34667888888888888888766 77777777776543 11123445555666655554 3455555555443322
Q ss_pred --CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC---------
Q 019734 151 --DKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGR--------- 211 (336)
Q Consensus 151 --~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~--------- 211 (336)
+++++|+.+|++++.. .++.++.++|.+|.. ++|+.+|+++++. +++.+++++|.+|..-.
T Consensus 225 ~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~ 304 (472)
T 4g1t_A 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLREN 304 (472)
T ss_dssp -----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4455555555555433 455555555555555 5555555555443 34555555555543100
Q ss_pred ------CCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH-----HHHHHHHHH
Q 019734 212 ------GVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG-----KAQLEHGLG 278 (336)
Q Consensus 212 ------g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~-----~a~~~lg~~ 278 (336)
.....+++|+.+|+++.+ +.+..+++.+|.+|.... ++++|+.+|++++..... ..++++|.+
T Consensus 305 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~----~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~ 380 (472)
T 4g1t_A 305 GMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD----QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNF 380 (472)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT----CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc----cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 001234455555555533 234445555555554322 555555555555543211 112344432
Q ss_pred -hhccCCHHHHHHHHHHHHH
Q 019734 279 -LFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 279 -~~~~~~~~~A~~~~~~A~~ 297 (336)
+...|++++|+.+|++|+.
T Consensus 381 ~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 381 QLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHh
Confidence 2345555555555555544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=7.2e-17 Score=143.36 Aligned_cols=222 Identities=16% Similarity=-0.004 Sum_probs=181.8
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
+...++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++...|++++|+.+|+++++. .++.+++.+
T Consensus 20 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLK----LANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHH
Confidence 34567888999988 58999999999999986 58899999999999999999999999999865 689999999
Q ss_pred HHHHHH----HHHHHHHHHHHHcC--CHHHHHHH--------------HH-HHhcCCCCccCHHHHHHHHHHHHHC--CC
Q 019734 176 GISYLQ----EEAVKLLYQASIAG--HVRAQYQL--------------AL-CLHRGRGVDFNLQEAARWYLRAAEG--GY 232 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~~--~~~a~~~l--------------g~-~~~~g~g~~~~~~~A~~~~~~a~~~--~~ 232 (336)
|.++.. ++|+.+|+++++.. +...+..+ |. ++.. .+++++|+.+|+++++. .+
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~ 171 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA----PNEYRECRTLLHAALEMNPND 171 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTS----HHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHH----cccHHHHHHHHHHHHhhCCCC
Confidence 999988 99999999998763 44444444 44 4554 78999999999999754 67
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCc--HHHHHHHH
Q 019734 233 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKN 308 (336)
Q Consensus 233 ~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~~~ 308 (336)
..++..+|.+|... +++++|+.++++++.. +++.++..+|.++...|++++|..+|+++++..+ ..+...++
T Consensus 172 ~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 247 (327)
T 3cv0_A 172 AQLHASLGVLYNLS----NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247 (327)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999763 3999999999999875 5688899999999999999999999999998754 45555554
Q ss_pred HHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 309 VILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 309 ~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
.+ ....++.++|....++..+..|.
T Consensus 248 ~~--~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 248 VS--YSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HH--HHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HH--HHHhccHHHHHHHHHHHHHhCCc
Confidence 44 44557788888888887766554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-16 Score=139.90 Aligned_cols=257 Identities=16% Similarity=0.056 Sum_probs=201.0
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCC--HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----C----C
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLRE--AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----S 136 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~----~ 136 (336)
.++..+...+..|++++|+..+.+.++..+.... +.+++.+|.+|.. .+++++|+.+|++++.. + .
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY----LHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 4566677788999999999999999998665211 5788999999998 58999999999998865 2 3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHH------------------------HHH
Q 019734 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQ------------------------EEA 184 (336)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~------------------------~~A 184 (336)
..++..+|.++...|++++|+.+|.++++. ++ ..++..+|.++.. ++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 568899999999999999999999999854 33 4578889988865 468
Q ss_pred HHHHHHHHHc----C----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCC
Q 019734 185 VKLLYQASIA----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEG 248 (336)
Q Consensus 185 ~~~~~ka~~~----~----~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~g 248 (336)
+.+|+++++. + ...++.++|.+|.. .+++++|+.+|+++++. ++ ..++..+|.+|..
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~--- 235 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF--- 235 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---
Confidence 8888887653 2 34588999999998 89999999999999653 22 3488999999975
Q ss_pred CcccHHHHHHHHHHHHHc----CC----HHHHHHHHHHhhccCCHHHHHHHHHHHHHcC----cH--HHHHHHHHHHhhc
Q 019734 249 LPLSHRQARKWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRAG----ET--AADHVKNVILQQL 314 (336)
Q Consensus 249 ~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~----~~--~a~~~~~~~~~~~ 314 (336)
.+++++|..++++++.. ++ ..++..+|.++...|++++|..+|++++... +. .+...........
T Consensus 236 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 314 (338)
T 3ro2_A 236 -LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 314 (338)
T ss_dssp -HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 33999999999999863 22 5677899999999999999999999998752 21 1223333334444
Q ss_pred ChhcHHHHHHHHHHhhcCCCC
Q 019734 315 SATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~ 335 (336)
..++.++|....++..+..+.
T Consensus 315 ~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 315 ALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHTCHHHHHHHHHHHHHC---
T ss_pred HcCChHHHHHHHHHHHHHHHh
Confidence 567888999998888776553
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-16 Score=144.60 Aligned_cols=254 Identities=15% Similarity=0.053 Sum_probs=198.9
Q ss_pred HHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCC--HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----C----
Q 019734 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLRE--AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G---- 135 (336)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~---- 135 (336)
..++..+..++..|++.+|+..+.+.++..+.... +.+++.+|.+|.. .+++++|+.+|++++.. +
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY----LHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34567777888999999999999999998665221 5789999999998 68999999999999765 2
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHH------------------------HH
Q 019734 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQ------------------------EE 183 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~------------------------~~ 183 (336)
...++..+|.+|...|++++|+.+|.++++. ++ +.++..+|.+|.. ++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 3568899999999999999999999999854 33 5588899998875 46
Q ss_pred HHHHHHHHHHc----C----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCC
Q 019734 184 AVKLLYQASIA----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGE 247 (336)
Q Consensus 184 A~~~~~ka~~~----~----~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~ 247 (336)
|+.+|+++++. + ...++.++|.+|.. .+++++|+.+|+++++. ++ ..++.++|.+|...
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~- 240 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL- 240 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-
Confidence 88888888653 2 34678999999998 89999999999999753 22 34889999999763
Q ss_pred CCcccHHHHHHHHHHHHHc----CC----HHHHHHHHHHhhccCCHHHHHHHHHHHHHc----CcH--HHHHHHHHHHhh
Q 019734 248 GLPLSHRQARKWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRA----GET--AADHVKNVILQQ 313 (336)
Q Consensus 248 g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~----~~~--~a~~~~~~~~~~ 313 (336)
+++++|+.+|++++.. ++ ..++.++|.+|...|++++|..+|++++.. ++. .+..........
T Consensus 241 ---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 317 (406)
T 3sf4_A 241 ---GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAY 317 (406)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---CChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 3999999999999863 22 557789999999999999999999999875 221 122333333333
Q ss_pred cChhcHHHHHHHHHHhhc
Q 019734 314 LSATSRDRAMLVVDSWRA 331 (336)
Q Consensus 314 ~~~~~~~~a~~~~~~~~~ 331 (336)
...++.++|...+++..+
T Consensus 318 ~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 318 TALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 445677778777666543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-16 Score=138.99 Aligned_cols=212 Identities=14% Similarity=0.042 Sum_probs=175.4
Q ss_pred CCChhHHhhhHHHHHHHHHhCC--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC
Q 019734 76 FTLPQLRAASLVCKSWNDALRP--LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD 151 (336)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~ 151 (336)
...+++++|+..+.+.++..+. ..++.+++.+|.+|.. .+++++|+.+|++++.. .++.+++.+|.+|...|
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH----cccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence 4568999999988888876331 1368899999999999 68999999999999987 47999999999999999
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 019734 152 KKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARW 223 (336)
Q Consensus 152 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~ 223 (336)
++++|+.+|+++++. +++.+++.+|.+|.. ++|+.+|+++++. +++.....++.++. .+++++|+.+
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~ 166 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ-----KLDEKQAKEV 166 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HHCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-----hcCHHHHHHH
Confidence 999999999999875 689999999999998 9999999999875 46666666665544 4789999999
Q ss_pred HHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC------HHHHHHHHHHhhccCCHHHHHHHHHHH
Q 019734 224 YLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH------GKAQLEHGLGLFTEGEMMKAVVYLELA 295 (336)
Q Consensus 224 ~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~------~~a~~~lg~~~~~~~~~~~A~~~~~~A 295 (336)
|++++.. .+... +.++.++.. . .+.++|+..+++++.... +.+++.+|.+|...|++++|..+|+++
T Consensus 167 ~~~~~~~~~~~~~~-~~~~~~~~~-~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 167 LKQHFEKSDKEQWG-WNIVEFYLG-N---ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHSCCCSTH-HHHHHHHTT-S---SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcchHH-HHHHHHHHH-h---cCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9988754 33333 345555543 2 267899999999976533 577899999999999999999999999
Q ss_pred HHcCcH
Q 019734 296 TRAGET 301 (336)
Q Consensus 296 ~~~~~~ 301 (336)
+...+.
T Consensus 242 l~~~p~ 247 (275)
T 1xnf_A 242 VANNVH 247 (275)
T ss_dssp HTTCCT
T ss_pred HhCCch
Confidence 987653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=9e-17 Score=136.81 Aligned_cols=169 Identities=16% Similarity=0.158 Sum_probs=132.4
Q ss_pred hHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHH
Q 019734 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVD 142 (336)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~ 142 (336)
+......+...+..|++++|...+.+.++..+. ++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 130 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSS--AATAYYGAGNVYVV----KEMYKEAKDMFEKALRAGMENGDLFYM 130 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--chHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 444566666777899999999999999988766 88999999999998 68999999999999987 47899999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCc
Q 019734 143 AGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVD 214 (336)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~ 214 (336)
+|.++...|++++|+.+|+++++. +++.+++.+|.++.. ++|+.+|+++++. .++.+++.+|.+|.. .
T Consensus 131 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~ 206 (243)
T 2q7f_A 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY----K 206 (243)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----T
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----c
Confidence 999999999999999999999865 567888888888776 7777777777654 456666777777666 5
Q ss_pred cCHHHHHHHHHHHHH--CCCHHHHHHHHHHH
Q 019734 215 FNLQEAARWYLRAAE--GGYVRAMYNTSLCY 243 (336)
Q Consensus 215 ~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~ 243 (336)
+++++|+.+|+++++ +.+..++..++.+.
T Consensus 207 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 207 ENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp TCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred cCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 667777777776644 34555555555443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-17 Score=161.49 Aligned_cols=159 Identities=14% Similarity=0.050 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
+++++++||.+|.. .+++++|+.+|++|++. +++.++++||.+|...|++++|+.+|++|++. ++++++++|
T Consensus 8 ~a~al~nLG~~~~~----~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKRE----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 67778888888777 57888888888887776 47777888888888888888777777777643 445555555
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccH
Q 019734 176 GISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSH 253 (336)
Q Consensus 176 g~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~ 253 (336)
|.+| .. .+++++|+.+|+++++ +++..++++||.+|... +++
T Consensus 84 g~~l----------------------------~~----~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~----g~~ 127 (723)
T 4gyw_A 84 GNTL----------------------------KE----MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS----GNI 127 (723)
T ss_dssp HHHH----------------------------HH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCH
T ss_pred HHHH----------------------------HH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCH
Confidence 5554 44 5566666666666643 35566666666666442 266
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 254 RQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 254 ~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
++|+.+|+++++. +++.++.+||.++...|++++|...|+++++.
T Consensus 128 ~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 128 PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 6666666666653 45666666666666666666666666666654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-17 Score=161.42 Aligned_cols=156 Identities=15% Similarity=0.063 Sum_probs=137.5
Q ss_pred hHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHH
Q 019734 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVD 142 (336)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~ 142 (336)
+......+..+...|++++|+..+++.++..|+ ++.++++||.+|.. .+++++|+.+|++|++. ++++++++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~--~~~a~~nLg~~l~~----~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE--FAAAHSNLASVLQQ----QGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 445566777788999999999999999999887 89999999999999 69999999999999987 58999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCc
Q 019734 143 AGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVD 214 (336)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~ 214 (336)
||.+|...|++++|+..|++|++. ++++++++||.+|.. ++|+.+|++|++. +++.++++||.+|.. .
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~----~ 158 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI----V 158 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----T
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh----c
Confidence 999999999999999999999865 788999999999888 8888888888765 578888888888887 7
Q ss_pred cCHHHHHHHHHHHHHC
Q 019734 215 FNLQEAARWYLRAAEG 230 (336)
Q Consensus 215 ~~~~~A~~~~~~a~~~ 230 (336)
+++++|++.|+++++.
T Consensus 159 g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 159 CDWTDYDERMKKLVSI 174 (723)
T ss_dssp TCCTTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh
Confidence 8888888888887653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-16 Score=149.59 Aligned_cols=256 Identities=14% Similarity=0.010 Sum_probs=171.3
Q ss_pred HHHhcCCChhHHhhhHHHHHHHHHhC-------CCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---------
Q 019734 71 KIAASFTLPQLRAASLVCKSWNDALR-------PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--------- 134 (336)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--------- 134 (336)
.+...+..|++++|+..+++.++..+ +...+.++.++|.+|.. .+++++|+.+|+++...
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~----~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH----MGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhHhcccccc
Confidence 34455678999999998888876521 23457788899999998 68999999999998763
Q ss_pred -CCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH-------HHHHHHHHHHHH---------
Q 019734 135 -GSTLAMVDAGLMYWE--MDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ-------EEAVKLLYQASI--------- 193 (336)
Q Consensus 135 -~~~~a~~~lg~~~~~--~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~-------~~A~~~~~ka~~--------- 193 (336)
..+.++.++|..+.. .+++++|+.+|+++++. ++++++..+|.++.. ++|+..|+++++
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~ 212 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK 212 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHH
Confidence 256788888866544 46799999999998754 788888888877654 344444444443
Q ss_pred -----------------------------c--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHH
Q 019734 194 -----------------------------A--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTS 240 (336)
Q Consensus 194 -----------------------------~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg 240 (336)
. ..+.++.++|.+|.. .+++++|+..|+++++ +.++.+++++|
T Consensus 213 ~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 213 VLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR----KDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH----cCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 2 344555555555555 5566666666666643 34566666666
Q ss_pred HHHHcCC-----------C----CcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHH-
Q 019734 241 LCYSFGE-----------G----LPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA- 302 (336)
Q Consensus 241 ~~~~~~~-----------g----~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~- 302 (336)
.+|.... + ....+++|+.+|++++.. ....+++++|.+|...|++++|..+|++++......
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~ 368 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence 6654210 0 011245566666666553 334556788888889999999999999999865322
Q ss_pred -H---HHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 303 -A---DHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 303 -a---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
. ...++.+. ....++.++|+...++.++..|.
T Consensus 369 ~~~~~~~~~~~~~-~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 369 AKQLLHLRYGNFQ-LYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp HHHHHHHHHHHHH-HHTSSCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCcc
Confidence 2 22333332 23456788999999988888775
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.8e-17 Score=152.43 Aligned_cols=195 Identities=15% Similarity=0.042 Sum_probs=163.7
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHH
Q 019734 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKK-EAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLY 189 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~-~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ 189 (336)
+.+++++..++.+... .++.+++.+|.++...|++ ++|+.+|+++++. +++.+++.||.+|.. ++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3477788888876655 4799999999999999999 9999999999865 789999999999998 99999999
Q ss_pred HHHHcC-CHHHHHHHHHHHhc-CCCCc----cCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcC-----CCCcccHHHH
Q 019734 190 QASIAG-HVRAQYQLALCLHR-GRGVD----FNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFG-----EGLPLSHRQA 256 (336)
Q Consensus 190 ka~~~~-~~~a~~~lg~~~~~-g~g~~----~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~-----~g~~~~~~~A 256 (336)
++++.. +..+++++|.+|.. +.+.. +++++|+.+|+++++ +.++.+++++|.+|... . ..+++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~-~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ-NPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC-CHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc-ccchHHHH
Confidence 999863 47999999999998 11111 899999999999965 57899999999999652 1 11489999
Q ss_pred HHHHHHHHHc-----CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC--cHHHHHHHHHHHhhc
Q 019734 257 RKWMKRAADC-----GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQL 314 (336)
Q Consensus 257 ~~~~~~a~~~-----~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~~~~~~~~~ 314 (336)
+.+|++++.. +++.+++++|.+|...|++++|..+|+++++.. +..+...++.++..+
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL 305 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999984 578899999999999999999999999999864 556666666655544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-15 Score=129.77 Aligned_cols=196 Identities=14% Similarity=0.137 Sum_probs=155.0
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHH
Q 019734 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQF 173 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~ 173 (336)
.++.+++.+|.++.. .+++++|+.+|++++.. .+..+++.+|.++...|++++|+.+|+++++. +++.+++
T Consensus 5 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 80 (228)
T 4i17_A 5 TDPNQLKNEGNDALN----AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYI 80 (228)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHH
T ss_pred cCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHH
Confidence 367889999999988 68999999999999875 46788888999999999999999999999865 5788899
Q ss_pred HHHHHHHH----HHHHHHHHHHHHc--CCH-------HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--C--CHHHH
Q 019734 174 NLGISYLQ----EEAVKLLYQASIA--GHV-------RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--G--YVRAM 236 (336)
Q Consensus 174 ~Lg~~~~~----~~A~~~~~ka~~~--~~~-------~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~--~~~a~ 236 (336)
.+|.+|.. ++|+.+|+++++. +++ .+++++|.++.. .+++++|+.+|+++++. . ++.++
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~ 156 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ----AGNIEKAEENYKHATDVTSKKWKTDAL 156 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH----hccHHHHHHHHHHHHhcCCCcccHHHH
Confidence 99999988 8999999999875 455 668999999988 89999999999999765 4 45889
Q ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC--cHHHHHHHHHHH
Q 019734 237 YNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVIL 311 (336)
Q Consensus 237 ~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~~~~~~ 311 (336)
+++|.+|.. .+...+.++...+........+......+++++|+.+|+++++.. ++++...+..+.
T Consensus 157 ~~l~~~~~~---------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 157 YSLGVLFYN---------NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH---------HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH---------HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 999999853 344556666665433333344455556778999999999999875 455555555543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.1e-16 Score=133.19 Aligned_cols=187 Identities=14% Similarity=0.043 Sum_probs=166.8
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
..+..+..++..|++++|...+.+.++..+. ++.+++.+|.+|.. .+++++|+.+|++++.. .++.+++.+|
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la 112 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPS--SADAHAALAVVFQT----EMEPKLADEEYRKALASDSRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCcHHHHHHHH
Confidence 3466677778899999999999999988766 78999999999998 68999999999999987 5789999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHH--c--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCc
Q 019734 145 LMYWEMDKKEAAISLYRQAAV--L--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVD 214 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~--~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~ 214 (336)
.++...|++++|+.+|+++++ . .++.+++.+|.++.. ++|+.+|+++++. .++.+++.+|.+|.. .
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~ 188 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK----E 188 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----T
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----c
Confidence 999999999999999999987 3 568899999999988 9999999999875 578999999999998 8
Q ss_pred cCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC
Q 019734 215 FNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG 267 (336)
Q Consensus 215 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~ 267 (336)
+++++|+.+|+++++. .+..++..++.++... +++++|..+++++++..
T Consensus 189 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGGGQNARSLLLGIRLAKVF----EDRDTAASYGLQLKRLY 239 (252)
T ss_dssp TCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHHC
Confidence 9999999999999764 6788999999999753 39999999999998864
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-16 Score=144.05 Aligned_cols=219 Identities=11% Similarity=0.055 Sum_probs=169.4
Q ss_pred HHHhcCCChhHHhhhHHHHHHHHHhCCCC----CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----C-----CH
Q 019734 71 KIAASFTLPQLRAASLVCKSWNDALRPLR----EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G-----ST 137 (336)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~-----~~ 137 (336)
.+...+..|++++|...+.+.++.....+ .+.+++.+|.+|.. .+++++|+.+|++|+.. + ..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY----MKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 66667788999999988888887644332 46789999999998 58999999999999874 2 24
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHH----HHHHHHHHHHHH--------cCCH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQ----EEAVKLLYQASI--------AGHV 197 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~----~~A~~~~~ka~~--------~~~~ 197 (336)
.++..+|.+|...|++++|+.+|+++++. ++ ..++++||.+|.. ++|+.+|+++++ ...+
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 57889999999999999999999999854 33 3578899999988 999999999987 2356
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC----CCHH---HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-CCH
Q 019734 198 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GYVR---AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GHG 269 (336)
Q Consensus 198 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~----~~~~---a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-~~~ 269 (336)
.+++++|.+|.. .+++++|+.+|+++++. +++. .+..+|.+|.... -...+++|+.++++.-.. ...
T Consensus 265 ~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~al~~~~~~~~~~~~~ 339 (383)
T 3ulq_A 265 QAYFLITQIHYK----LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP-DEEAIQGFFDFLESKMLYADLE 339 (383)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCcCHHHHH
Confidence 788999999988 78999999999998653 3332 2466888885432 112377888888776221 224
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
.++..||.+|...|++++|..+|++++..
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56788999999999999999999999863
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.1e-16 Score=129.00 Aligned_cols=189 Identities=13% Similarity=0.053 Sum_probs=153.5
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHH
Q 019734 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFN 174 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 174 (336)
.++.+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++...|++++|+.+|.++++. .++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMR----GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence 368889999999988 58999999999999886 57889999999999999999999999999865 57888888
Q ss_pred HHHHHHH-----HHHHHHHHHHHH--c--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHH
Q 019734 175 LGISYLQ-----EEAVKLLYQASI--A--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCY 243 (336)
Q Consensus 175 Lg~~~~~-----~~A~~~~~ka~~--~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~ 243 (336)
+|.++.. ++|+.+|+++++ . ....+++.+|.++.. .+++++|+.+|+++++ +.+..+++.+|.++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK----QGQFGLAEAYLKRSLAAQPQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 8888865 788888888877 2 236788888888887 7888888888888865 35688888888888
Q ss_pred HcCCCCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 244 SFGEGLPLSHRQARKWMKRAADC---GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 244 ~~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
.. .+++++|+.++++++.. .++..+..++.++...|+.++|..+++.+....
T Consensus 158 ~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 158 ML----AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HH----HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HH----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 65 33888888888888763 556777777777788888888888888877543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-15 Score=125.51 Aligned_cols=182 Identities=13% Similarity=0.029 Sum_probs=93.5
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM 146 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~ 146 (336)
...+...+..|++++|...+.+.++..+. ++.+++.+|.+|.. .+++++|+.+|++++.. .++.+++.+|.+
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALKSDPK--NELAWLVRAEIYQY----LKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 33444444555555555555555555443 45555555555555 35555555555555543 245555555555
Q ss_pred HhcC-CCHHHHHHHHHHHHH--c--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCcc
Q 019734 147 YWEM-DKKEAAISLYRQAAV--L--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDF 215 (336)
Q Consensus 147 ~~~~-~~~~~A~~~~~~a~~--~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~ 215 (336)
+... |++++|+.+|+++++ . .++.+++.+|.++.. ++|+.+|+++++. .++.+++.+|.++.. .+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~ 161 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML----AG 161 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HT
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH----cC
Confidence 5555 555555555555554 1 224555555555554 5555555555443 345555555555554 45
Q ss_pred CHHHHHHHHHHHHH--C-CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019734 216 NLQEAARWYLRAAE--G-GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 264 (336)
Q Consensus 216 ~~~~A~~~~~~a~~--~-~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~ 264 (336)
++++|+.+|++++. + .+..++..++.++.... +.++|..+++.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALG----NAQAAYEYEAQLQ 209 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC----cHHHHHHHHHHHH
Confidence 55555555555532 3 44444444444443321 5555555555544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-15 Score=134.93 Aligned_cols=215 Identities=15% Similarity=0.054 Sum_probs=175.0
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CCHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GSTLAMVDAG 144 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~~~~a~~~lg 144 (336)
+..+...+..|++++|+..++. . +.+...++..++..+.. .++.++|+..|++.+.. +++.+++.+|
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~----~-~~~~~~a~~~la~~~~~----~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la 108 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKP----S-SAPELQAVRMFAEYLAS----HSRRDAIVAELDREMSRSVDVTNTTFLLMAA 108 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCT----T-SCHHHHHHHHHHHHHHC----STTHHHHHHHHHHHHHSCCCCSCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHhcc----c-CChhHHHHHHHHHHHcC----CCcHHHHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 3345566788899988654432 2 33467788888888887 58999999999998864 4789999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHcCCHHHHHHHHH----HHhcCCCCccC
Q 019734 145 LMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQASIAGHVRAQYQLAL----CLHRGRGVDFN 216 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~~~a~~~lg~----~~~~g~g~~~~ 216 (336)
.++...|++++|+.+|++ .++++++..+|.+|.. ++|+..|+++++........+++. ++.. .++
T Consensus 109 ~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~----~~~ 181 (291)
T 3mkr_A 109 SIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG----GEK 181 (291)
T ss_dssp HHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC----TTH
T ss_pred HHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhC----chH
Confidence 999999999999999999 7899999999999998 999999999987653333334432 2322 478
Q ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHH-HHHH
Q 019734 217 LQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMK-AVVY 291 (336)
Q Consensus 217 ~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~-A~~~ 291 (336)
+++|+..|+++++ +.++.+++++|.++.... ++++|...|++++.. +++.+++++|.++...|+..+ +..+
T Consensus 182 ~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~ 257 (291)
T 3mkr_A 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG----RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY 257 (291)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999976 578999999999997633 999999999999985 779999999999999999876 5689
Q ss_pred HHHHHHcCcHHH
Q 019734 292 LELATRAGETAA 303 (336)
Q Consensus 292 ~~~A~~~~~~~a 303 (336)
++++++..+.++
T Consensus 258 ~~~~~~~~P~~~ 269 (291)
T 3mkr_A 258 LSQLKDAHRSHP 269 (291)
T ss_dssp HHHHHHHCTTCH
T ss_pred HHHHHHhCCCCh
Confidence 999998765443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-16 Score=143.03 Aligned_cols=223 Identities=20% Similarity=0.160 Sum_probs=184.1
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCC----CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----C----
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPL----REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G---- 135 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~---- 135 (336)
....+..++..|++++|...+.+.++..... ..+.+++.+|.+|.. .+++++|+.+|++++.. +
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~ 164 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKV----MGRFDEAAICCERHLTLARQLGDRLS 164 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhhchHH
Confidence 3455556667899999999998888764221 256789999999998 68999999999999875 2
Q ss_pred CHHHHHHHHHHHhcCCC-----------------HHHHHHHHHHHHHc----C----CHHHHHHHHHHHHH----HHHHH
Q 019734 136 STLAMVDAGLMYWEMDK-----------------KEAAISLYRQAAVL----G----DPAGQFNLGISYLQ----EEAVK 186 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~~~-----------------~~~A~~~~~~a~~~----~----~~~a~~~Lg~~~~~----~~A~~ 186 (336)
...++..+|.+|...|+ +++|+.+|.++++. + ...++.++|.+|.. ++|+.
T Consensus 165 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 244 (411)
T 4a1s_A 165 EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIE 244 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 35688999999999999 99999999998753 2 34688999999998 99999
Q ss_pred HHHHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCc
Q 019734 187 LLYQASIA----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLP 250 (336)
Q Consensus 187 ~~~ka~~~----~~----~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~g~~ 250 (336)
+|+++++. ++ ..+++++|.+|.. .+++++|+.+|+++++. ++ ..++..+|.+|...
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---- 316 (411)
T 4a1s_A 245 HHQERLRIAREFGDRAAERRANSNLGNSHIF----LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL---- 316 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc----
Confidence 99999764 23 3488999999998 89999999999999754 22 67889999999753
Q ss_pred ccHHHHHHHHHHHHHc----CC----HHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHH
Q 019734 251 LSHRQARKWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 302 (336)
Q Consensus 251 ~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 302 (336)
+++++|+.+|++++.. ++ ..++..+|.+|...|++++|..+|+++++.....
T Consensus 317 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 317 HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 3999999999999874 22 4578999999999999999999999999876543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-15 Score=137.81 Aligned_cols=221 Identities=11% Similarity=0.058 Sum_probs=173.5
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCC----CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----C-----
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLR----EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----- 135 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~----- 135 (336)
+..+...+..|++.+|+..+.+.++.....+ .+.+++.+|.+|.. .+++++|+.+|++|+.. +
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYH----MKQTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence 3455556788999999988888887655433 46789999999998 68999999999999864 2
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHH----HHHHHHHHHHHH-----c--CC
Q 019734 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQ----EEAVKLLYQASI-----A--GH 196 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~----~~A~~~~~ka~~-----~--~~ 196 (336)
...+++.+|.+|...|++++|+.+|.++++. ++ ..++++||.+|.. ++|+.+|+++++ . ..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 2457889999999999999999999999864 33 4678999999988 999999999987 3 24
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC----C---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-CC
Q 019734 197 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GH 268 (336)
Q Consensus 197 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~----~---~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-~~ 268 (336)
+.+++++|.+|.. .+++++|+.+|+++++. + .......++.+|.. .+....+.+|+.++++.-.. ..
T Consensus 261 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~-~~~~~~~~~al~~~~~~~~~~~~ 335 (378)
T 3q15_A 261 PKVLFGLSWTLCK----AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE-TVDERKIHDLLSYFEKKNLHAYI 335 (378)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhCCChhHH
Confidence 7889999999998 89999999999999763 1 23445667777743 32123388888888873211 22
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 269 GKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 269 ~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
......||.+|...|++++|..+|+++++.
T Consensus 336 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 336 EACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 456689999999999999999999999874
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-15 Score=137.77 Aligned_cols=216 Identities=13% Similarity=0.073 Sum_probs=169.8
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----C---
Q 019734 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----G--- 167 (336)
Q Consensus 103 a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~--- 167 (336)
.++.+|.++.. .+++++|+.+|++|+.. + .+.+++.+|.+|...|++++|+.+|.+|++. +
T Consensus 105 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 105 FNFFRGMYELD----QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHH----hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 34558999888 68999999999999875 3 3578999999999999999999999999854 2
Q ss_pred --CHHHHHHHHHHHHH----HHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH----
Q 019734 168 --DPAGQFNLGISYLQ----EEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE---- 229 (336)
Q Consensus 168 --~~~a~~~Lg~~~~~----~~A~~~~~ka~~~----~~----~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~---- 229 (336)
.+.+++++|.+|.. ++|+.+|+++++. ++ ..+++++|.+|.. .+++++|+.+|+++++
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHh
Confidence 24688999999998 9999999999864 32 3589999999998 8999999999999987
Q ss_pred ----CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CCHH---HHHHHHHHhhccCC---HHHHHHHHHHH
Q 019734 230 ----GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GHGK---AQLEHGLGLFTEGE---MMKAVVYLELA 295 (336)
Q Consensus 230 ----~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~~~~---a~~~lg~~~~~~~~---~~~A~~~~~~A 295 (336)
.....+++++|.+|... +++++|..++++++.. +++. ....||.+|...|+ +++|+.++++.
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYKL----GKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred hccchhHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 34578899999999763 3999999999999874 3432 24679999999999 88888888877
Q ss_pred HHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhc
Q 019734 296 TRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRA 331 (336)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 331 (336)
- ..+..+.............++.++|....++...
T Consensus 333 ~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 333 M-LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 1122222333333334455677888877776553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-15 Score=133.30 Aligned_cols=227 Identities=15% Similarity=0.081 Sum_probs=167.5
Q ss_pred hHHHHHHHHhcCCChhHHhhhHHHHHHHHHhC------CCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----
Q 019734 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALR------PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---- 134 (336)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~---- 134 (336)
.......+..++..|++++|...+.+.++... ....+.+++.+|.+|.. .+++++|+.+|++++..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD----QNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHH
Confidence 34456677777899999999999999998632 22367889999999998 58999999999999875
Q ss_pred --C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHH----HHHHHHHHHHHHc
Q 019734 135 --G----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----------GDPAGQFNLGISYLQ----EEAVKLLYQASIA 194 (336)
Q Consensus 135 --~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~ 194 (336)
+ ...+++.+|.+|...|++++|+.+|+++++. ....+++.+|.++.. ++|+.+|+++++.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 3567889999999999999999999999864 235678889999987 9999999999775
Q ss_pred --------C--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHcC--CCCcc
Q 019734 195 --------G--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-----------YVRAMYNTSLCYSFG--EGLPL 251 (336)
Q Consensus 195 --------~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~-----------~~~a~~~lg~~~~~~--~g~~~ 251 (336)
. ...+++.+|.+|.. .+++++|+.+|+++++.. ....+..++.++..+ .....
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLK----QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence 2 34678999999988 899999999999987531 122233333333322 11233
Q ss_pred cHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 252 SHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 252 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
.+.++..+++++... ....++.++|.+|...|++++|..+|+++++..
T Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 259 SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 666777788887764 346678999999999999999999999998753
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=6.4e-15 Score=127.65 Aligned_cols=209 Identities=13% Similarity=-0.023 Sum_probs=171.0
Q ss_pred cCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHH
Q 019734 118 RKNLDKALDSFLKGAAR------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAV 185 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~ 185 (336)
.+++++|+.+|+++++. .++.+++.+|.++...|++++|+.+|+++++. .++.+++.+|.+|.. ++|+
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 57999999999999986 25788999999999999999999999999865 689999999999998 9999
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHH
Q 019734 186 KLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMK 261 (336)
Q Consensus 186 ~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~ 261 (336)
.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++. .+......++.++. .+++++|+.+++
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~ 168 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYY----GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ-----KLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HHCHHHHHHHHH
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-----hcCHHHHHHHHH
Confidence 999999885 578999999999998 89999999999999764 56666666665543 248999999999
Q ss_pred HHHHcCC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH----HHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 262 RAADCGH-GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET----AADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 262 ~a~~~~~-~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~----~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
+++...+ ....+.++.++...++.++|+..+++++...+. .+.............++.++|....++.....|.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 169 QHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred HHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 9987522 222356777788899999999999999876542 1333333444444567899999999999988874
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-15 Score=136.64 Aligned_cols=220 Identities=18% Similarity=0.126 Sum_probs=175.7
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--C----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----C--
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S----TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----G-- 167 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~-- 167 (336)
...+++.+|.++.. .+++++|+.+|++++... + ..+++.+|.++...|++++|+.+|+++++. +
T Consensus 8 ~~~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 8 SCLELALEGERLCK----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 57788999999999 689999999999999873 4 467899999999999999999999998754 2
Q ss_pred --CHHHHHHHHHHHHH----HHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCccC-----------------
Q 019734 168 --DPAGQFNLGISYLQ----EEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFN----------------- 216 (336)
Q Consensus 168 --~~~a~~~Lg~~~~~----~~A~~~~~ka~~~----~~----~~a~~~lg~~~~~g~g~~~~----------------- 216 (336)
.+.+++.+|.+|.. ++|+.+|+++++. ++ ..++.++|.+|.. .++
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHTCC-------CCCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH----cCCcccccccchhhhhhhhH
Confidence 35688999999988 9999999999764 33 5589999999988 788
Q ss_pred ---HHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC----HHHHHHHHH
Q 019734 217 ---LQEAARWYLRAAEG----G----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGL 277 (336)
Q Consensus 217 ---~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~ 277 (336)
+++|+.+|++++.. + ...++.++|.+|.. .+++++|+.+|++++.. ++ ..++.++|.
T Consensus 160 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 235 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 235 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999998643 2 35678999999975 34999999999999873 22 237799999
Q ss_pred HhhccCCHHHHHHHHHHHHHcC----cH--HHHHHHHHHHhhcChhcHHHHHHHHHHhhc
Q 019734 278 GLFTEGEMMKAVVYLELATRAG----ET--AADHVKNVILQQLSATSRDRAMLVVDSWRA 331 (336)
Q Consensus 278 ~~~~~~~~~~A~~~~~~A~~~~----~~--~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 331 (336)
+|...|++++|..+|++++... +. .+.............++.++|...+++...
T Consensus 236 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 236 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 9999999999999999998642 21 133333333344455677778777766543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=9.9e-14 Score=123.41 Aligned_cols=211 Identities=10% Similarity=-0.016 Sum_probs=173.5
Q ss_pred HhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC---CCcCC-------HHHHHHHHHHHHH-c--CCHHHHHHHHHHHh
Q 019734 82 RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR---GVRKN-------LDKALDSFLKGAA-R--GSTLAMVDAGLMYW 148 (336)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~---g~~~~-------~~~A~~~~~~A~~-~--~~~~a~~~lg~~~~ 148 (336)
.+|...+.+.++..|. ++.+|+.+|.++.... ...++ .++|+..|++|+. . ++..++..+|.++.
T Consensus 33 ~~a~~~~~~al~~~p~--~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5788888899998877 8999999999886300 00145 4999999999998 4 57889999999999
Q ss_pred cCCCHHHHHHHHHHHHHc--CCHH-HHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHH
Q 019734 149 EMDKKEAAISLYRQAAVL--GDPA-GQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQE 219 (336)
Q Consensus 149 ~~~~~~~A~~~~~~a~~~--~~~~-a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~ 219 (336)
..|++++|+..|+++++. +++. ++..+|.++.. ++|+..|++|++. ....++...+.+... ..+++++
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~---~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY---CSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH---TSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HcCCHHH
Confidence 999999999999999976 4566 89999999877 9999999999975 355666666655332 1489999
Q ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc------CCHHHHHHHHHHhhccCCHHHHHHH
Q 019734 220 AARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC------GHGKAQLEHGLGLFTEGEMMKAVVY 291 (336)
Q Consensus 220 A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~~~~~~~A~~~ 291 (336)
|+..|+++++ +.++..+..++.++.. .| ++++|+..|++++.. .....+..++..+...|++++|...
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~-~g---~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSH-LN---EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT-TC---CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999965 6889999999999865 33 999999999999984 2455778888888899999999999
Q ss_pred HHHHHHcCcH
Q 019734 292 LELATRAGET 301 (336)
Q Consensus 292 ~~~A~~~~~~ 301 (336)
+++++...+.
T Consensus 264 ~~~a~~~~p~ 273 (308)
T 2ond_A 264 EKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHccc
Confidence 9999987654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-15 Score=125.17 Aligned_cols=153 Identities=15% Similarity=0.092 Sum_probs=80.8
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHH----------------HHHHHhcCCCCcCCHHHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLR----------------WGKRFKHGRGVRKNLDKALDSFLK 130 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~----------------lg~~~~~g~g~~~~~~~A~~~~~~ 130 (336)
..+.++..++..|++++|+..+.+.++..|+ ++.+++. +|.+|.. .+++++|+.+|++
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~ 79 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNID--RTEMYYWTNVDKNSEISSKLATELALAYKK----NRNYDKAYLFYKE 79 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH--HHHHHHHHHSCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHhhhcchhhhhHHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence 4455555666666666666666666665554 5555555 5555555 3556666666666
Q ss_pred HHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH------HHHHHHHHHHHHcCC-HHH
Q 019734 131 GAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ------EEAVKLLYQASIAGH-VRA 199 (336)
Q Consensus 131 A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~------~~A~~~~~ka~~~~~-~~a 199 (336)
+++. +++.+++.+|.+|...|++++|+.+|+++++. +++.++++||.+|.. ..+...|+++..... ..+
T Consensus 80 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 159 (208)
T 3urz_A 80 LLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159 (208)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHH
Confidence 5554 35555566666665556666666666655432 455555555555533 333444444433221 123
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 019734 200 QYQLALCLHRGRGVDFNLQEAARWYLRAAE 229 (336)
Q Consensus 200 ~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~ 229 (336)
++++|.++.. .+++++|+.+|+++++
T Consensus 160 ~~~~g~~~~~----~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 160 RYRDGLSKLF----TTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHH----HHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH----ccCHHHHHHHHHHHHH
Confidence 4445554444 4455555555555543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.9e-14 Score=125.41 Aligned_cols=207 Identities=10% Similarity=-0.035 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhc-------CCCH-------HHHHHHHHHHHH-c--CCHHHHHHHHHHHHH-
Q 019734 122 DKALDSFLKGAAR--GSTLAMVDAGLMYWE-------MDKK-------EAAISLYRQAAV-L--GDPAGQFNLGISYLQ- 181 (336)
Q Consensus 122 ~~A~~~~~~A~~~--~~~~a~~~lg~~~~~-------~~~~-------~~A~~~~~~a~~-~--~~~~a~~~Lg~~~~~- 181 (336)
++|+..|++|+.. .++++|+.+|.++.. .|++ ++|+..|++|++ . +++.+++.+|.++..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 7899999999986 799999999999863 5775 999999999997 3 688999999999987
Q ss_pred ---HHHHHHHHHHHHc--CCHH-HHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccH
Q 019734 182 ---EEAVKLLYQASIA--GHVR-AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSH 253 (336)
Q Consensus 182 ---~~A~~~~~ka~~~--~~~~-a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~ 253 (336)
++|+..|+++++. .++. ++.++|.++.. .+++++|+..|+++++. .....+...+.+.....| ++
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~---~~ 185 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK---DK 185 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH----HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC---CH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC---CH
Confidence 9999999999986 3565 99999999987 78999999999999875 455566555555332223 99
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC--cH--HHHHHHHHHHhhcChhcHHHHHHHHH
Q 019734 254 RQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ET--AADHVKNVILQQLSATSRDRAMLVVD 327 (336)
Q Consensus 254 ~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~--~~--~a~~~~~~~~~~~~~~~~~~a~~~~~ 327 (336)
++|+..|+++++. +++..+.++|.++...|++++|..+|++++... ++ ........+......++.+.+..+.+
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999874 778999999999999999999999999999952 22 22222333333334567888889988
Q ss_pred HhhcCCCC
Q 019734 328 SWRAMPSL 335 (336)
Q Consensus 328 ~~~~~~~~ 335 (336)
+..+.+|.
T Consensus 266 ~a~~~~p~ 273 (308)
T 2ond_A 266 RRFTAFRE 273 (308)
T ss_dssp HHHHHTTT
T ss_pred HHHHHccc
Confidence 88887774
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=129.14 Aligned_cols=219 Identities=18% Similarity=0.108 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----C---
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GS----TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----G--- 167 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~--- 167 (336)
...++..|..+.. .+++++|+.+|++++.. ++ ..++..+|.++...|++++|+.+|+++++. +
T Consensus 5 ~~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 80 (338)
T 3ro2_A 5 CLELALEGERLCK----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 80 (338)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHH----hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccH
Confidence 4567778999888 68999999999999987 34 467889999999999999999999998754 2
Q ss_pred -CHHHHHHHHHHHHH----HHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCccC------------------
Q 019734 168 -DPAGQFNLGISYLQ----EEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFN------------------ 216 (336)
Q Consensus 168 -~~~a~~~Lg~~~~~----~~A~~~~~ka~~~----~~----~~a~~~lg~~~~~g~g~~~~------------------ 216 (336)
.+.++..+|.++.. ++|+.+|+++++. ++ ..++..+|.+|.. .++
T Consensus 81 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~a~ 156 (338)
T 3ro2_A 81 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDTGEFPEDVR 156 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHTSSSSSCC----CCHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH----cCcccccchhhhhhhhhhhHH
Confidence 35688999999988 9999999999764 33 4588999999987 778
Q ss_pred --HHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC----HHHHHHHHHH
Q 019734 217 --LQEAARWYLRAAEG----G----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGLG 278 (336)
Q Consensus 217 --~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~ 278 (336)
+++|+.+|++++.. + ...++..+|.+|.. .+++++|+.++++++.. ++ ..++.++|.+
T Consensus 157 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 232 (338)
T 3ro2_A 157 NALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 232 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 99999999998643 2 35678899999975 33999999999999863 33 2377999999
Q ss_pred hhccCCHHHHHHHHHHHHHcC----cH--HHHHHHHHHHhhcChhcHHHHHHHHHHhhc
Q 019734 279 LFTEGEMMKAVVYLELATRAG----ET--AADHVKNVILQQLSATSRDRAMLVVDSWRA 331 (336)
Q Consensus 279 ~~~~~~~~~A~~~~~~A~~~~----~~--~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 331 (336)
+...|++++|..+|++++... +. .+.............++.++|....++...
T Consensus 233 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 233 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999998642 21 123333333334455677777777666543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=6.6e-15 Score=130.12 Aligned_cols=145 Identities=16% Similarity=0.117 Sum_probs=76.5
Q ss_pred HHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHH----HHHHHHHHHHHHc----CC----HHHHHHHHH
Q 019734 146 MYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQ----EEAVKLLYQASIA----GH----VRAQYQLAL 205 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~----~~A~~~~~ka~~~----~~----~~a~~~lg~ 205 (336)
+|...|++++|+.+|.++++. ++ +.++.++|.+|.. ++|+.+|++|++. ++ ..++.++|.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444455555555555555432 22 2344555555544 5555555555432 22 235556666
Q ss_pred HHhcCCCCc-cCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CH-----
Q 019734 206 CLHRGRGVD-FNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HG----- 269 (336)
Q Consensus 206 ~~~~g~g~~-~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~--~~----- 269 (336)
+|.. . +++++|+.+|++|++. ++ ..++.++|.+|... +++++|+.+|++++... +.
T Consensus 126 ~~~~----~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 126 ILEN----DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD----GQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHH----TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHH----hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 6655 4 5666666666666542 11 34455666666442 26666666666666531 11
Q ss_pred --HHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 270 --KAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 270 --~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
..++++|.++...|++++|+.+|++++..
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 13456666666666666666666666654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-14 Score=121.02 Aligned_cols=198 Identities=13% Similarity=0.085 Sum_probs=158.0
Q ss_pred hHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHH
Q 019734 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVD 142 (336)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~ 142 (336)
|...+..+..++..|++.+|+..+.+.++..+. .+..+++.+|.++.. .+++++|+.+|++++.. .++.+++.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~ 81 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-QDSVTAYNCGVCADN----IKKYKEAADYFDIAIKKNYNLANAYIG 81 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhCcchHHHHHH
Confidence 456788888899999999999999999998762 277899999999999 69999999999999987 47889999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHc--CCH-------HHHHHHHHHHHH----HHHHHHHHHHHHcC----CHHHHHHHHH
Q 019734 143 AGLMYWEMDKKEAAISLYRQAAVL--GDP-------AGQFNLGISYLQ----EEAVKLLYQASIAG----HVRAQYQLAL 205 (336)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~--~~~-------~a~~~Lg~~~~~----~~A~~~~~ka~~~~----~~~a~~~lg~ 205 (336)
+|.+|...|++++|+.+|+++++. +++ .+++.+|.++.. ++|+.+|+++++.+ ++.+++++|.
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999999875 667 668999999988 99999999998864 4589999999
Q ss_pred HHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhh
Q 019734 206 CLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLF 280 (336)
Q Consensus 206 ~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~ 280 (336)
+|.. .+...++++............+..... .+.+++|+.+|+++++. +++.+...|+.+..
T Consensus 162 ~~~~---------~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 162 LFYN---------NGADVLRKATPLASSNKEKYASEKAKA----DAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHH---------HHHHHHHHHGGGTTTCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHH---------HHHHHHHHHHhcccCCHHHHHHHHHHH----HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 9864 344555666544322222222222221 33799999999999885 66777777777643
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.2e-15 Score=129.51 Aligned_cols=191 Identities=14% Similarity=0.083 Sum_probs=145.4
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc------C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------G----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--- 166 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~------~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--- 166 (336)
.+.+++.+|.+|.. .+++++|+.+|++++.. . ...++..+|.+|...|++++|+.+|.++++.
T Consensus 42 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 42 VATMLNILALVYRD----QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117 (283)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 57899999999999 68999999999999865 1 3568899999999999999999999999854
Q ss_pred -------CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--------C--CHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 019734 167 -------GDPAGQFNLGISYLQ----EEAVKLLYQASIA--------G--HVRAQYQLALCLHRGRGVDFNLQEAARWYL 225 (336)
Q Consensus 167 -------~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--------~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~ 225 (336)
....+++++|.+|.. ++|+.+|+++++. . ...++.++|.+|.. .+++++|+.+|+
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~ 193 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK----QGKYQDAETLYK 193 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHH
Confidence 235788999999988 9999999999875 2 35688999999998 899999999999
Q ss_pred HHHHC-----------CCHHHHHHHHHHHHcCC--CCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHH
Q 019734 226 RAAEG-----------GYVRAMYNTSLCYSFGE--GLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVV 290 (336)
Q Consensus 226 ~a~~~-----------~~~~a~~~lg~~~~~~~--g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~ 290 (336)
++++. .....+..++.++.... .....+.++..+++..... ....++..||.+|...|++++|..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 273 (283)
T 3edt_B 194 EILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHT 273 (283)
T ss_dssp HHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99753 23445666666665432 1233455555555444322 235677999999999999999999
Q ss_pred HHHHHHHc
Q 019734 291 YLELATRA 298 (336)
Q Consensus 291 ~~~~A~~~ 298 (336)
+|+++++.
T Consensus 274 ~~~~al~~ 281 (283)
T 3edt_B 274 LEDCASRN 281 (283)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99999874
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=4e-14 Score=125.11 Aligned_cols=185 Identities=16% Similarity=0.088 Sum_probs=146.2
Q ss_pred HHHHhcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHH
Q 019734 108 GKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAG 171 (336)
Q Consensus 108 g~~~~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a 171 (336)
|.+|.. .+++++|+.+|++|+.. ++ +.++.++|.+|...|++++|+.+|++|++. ++ +.+
T Consensus 44 ~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 44 ATIYRL----RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHH----TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHH----cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 556665 57999999999999875 33 468899999999999999999999999854 44 457
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC--CH---
Q 019734 172 QFNLGISYLQ-----EEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YV--- 233 (336)
Q Consensus 172 ~~~Lg~~~~~-----~~A~~~~~ka~~~----~~----~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~--~~--- 233 (336)
+.++|.+|.. ++|+.+|++|++. ++ ..++.++|.+|.. .+++++|+.+|+++++.. +.
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 195 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEASDIYSKLIKSSMGNRLSQ 195 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhcCCccc
Confidence 8999999975 8999999999874 22 4678999999998 899999999999998742 22
Q ss_pred ----HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HH-----HHHHHHHHhh--ccCCHHHHHHHHHHHHHcCc
Q 019734 234 ----RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GK-----AQLEHGLGLF--TEGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 234 ----~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~--~~-----a~~~lg~~~~--~~~~~~~A~~~~~~A~~~~~ 300 (336)
.+++++|.+|... +++++|+.+|++++...+ .. ....|+..+. ..+++++|+..|++++..++
T Consensus 196 ~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 196 WSLKDYFLKKGLCQLAA----TDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp GGHHHHHHHHHHHHHHT----TCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 2678999999753 399999999999987532 22 2345666564 46789999999999988776
Q ss_pred HHHH
Q 019734 301 TAAD 304 (336)
Q Consensus 301 ~~a~ 304 (336)
....
T Consensus 272 ~~~~ 275 (292)
T 1qqe_A 272 WKIT 275 (292)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-14 Score=128.93 Aligned_cols=214 Identities=14% Similarity=0.062 Sum_probs=166.9
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----C---
Q 019734 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----G--- 167 (336)
Q Consensus 103 a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~--- 167 (336)
.++.+|..+.. .+++++|+.+|++|... + .+.+++.+|.+|...|++++|+.++.+|++. +
T Consensus 103 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 103 SLFFRGMYEFD----QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHH----HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 57778998888 68999999999999875 2 3578899999999999999999999999853 2
Q ss_pred --CHHHHHHHHHHHHH----HHHHHHHHHHHHc----C----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH----
Q 019734 168 --DPAGQFNLGISYLQ----EEAVKLLYQASIA----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE---- 229 (336)
Q Consensus 168 --~~~a~~~Lg~~~~~----~~A~~~~~ka~~~----~----~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~---- 229 (336)
.+.+++++|.+|.. ++|+.+|+++++. + ...++++||.+|.. .+++++|+.+|+++++
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR----SGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHh
Confidence 25678899999998 9999999999863 3 24688999999998 8999999999999986
Q ss_pred -C--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC---HHHHHHHHHHhhccCC---HHHHHHHHHHHH
Q 019734 230 -G--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH---GKAQLEHGLGLFTEGE---MMKAVVYLELAT 296 (336)
Q Consensus 230 -~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~~---~~a~~~lg~~~~~~~~---~~~A~~~~~~A~ 296 (336)
. ....+++++|.+|... +++++|..++++++.. ++ ......|+.+|...++ +.+|+.++++.-
T Consensus 255 ~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~ 330 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCKA----GQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN 330 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT
T ss_pred hCChhHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC
Confidence 3 3478899999999763 3999999999999984 22 3345788888999998 888888888732
Q ss_pred Hc-CcHHHHHHHHHHHhhcChhcHHHHHHHHHHhh
Q 019734 297 RA-GETAADHVKNVILQQLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 297 ~~-~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 330 (336)
.. ........++.+ ....++.++|....++..
T Consensus 331 ~~~~~~~~~~~la~~--y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 331 LHAYIEACARSAAAV--FESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp CHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHH--HHHCCCHHHHHHHHHHHH
Confidence 11 112233333333 334566777777666544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.5e-15 Score=122.55 Aligned_cols=165 Identities=14% Similarity=0.013 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHH----------------HHHHHhcCCCHHHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVD----------------AGLMYWEMDKKEAAISLYR 161 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~----------------lg~~~~~~~~~~~A~~~~~ 161 (336)
.++.++..|..+.. .+++++|+.+|++++... ++.+++. +|.+|...|++++|+.+|+
T Consensus 3 ~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 3 SVDEMLQKVSAAIE----AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45666667777666 467777777777777653 4556666 6666666666666655555
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHH
Q 019734 162 QAAVLGDPAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNT 239 (336)
Q Consensus 162 ~a~~~~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~l 239 (336)
++++. +++++.+++++|.+|.. .+++++|+.+|+++++ ++++.+++++
T Consensus 79 ~al~~--------------------------~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~l 128 (208)
T 3urz_A 79 ELLQK--------------------------APNNVDCLEACAEMQVC----RGQEKDALRMYEKILQLEADNLAANIFL 128 (208)
T ss_dssp HHHHH--------------------------CTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHH--------------------------CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 55532 12455566666666666 6788888888888754 5678888888
Q ss_pred HHHHHcCCCCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHcCc
Q 019734 240 SLCYSFGEGLPLSHRQARKWMKRAADCGH-GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 240 g~~~~~~~g~~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~ 300 (336)
|.+|.... ......+...|++++...+ ..+++++|.++...|++++|+.+|++|++..+
T Consensus 129 g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 129 GNYYYLTA--EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHH--HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHh--HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 88874311 2255667777777765432 23568889888889999999999999998754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-14 Score=123.00 Aligned_cols=78 Identities=14% Similarity=0.180 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CC
Q 019734 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GS---TLAMVDAGLMYWEMDKKEAAISLYRQAAVL-----GD 168 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~ 168 (336)
.++.+++.+|..+.. .+++++|+.+|++++.. ++ +.+++.+|.+|+..|++++|+..|+++++. ..
T Consensus 13 ~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 13 SSPQEAFERAMEFYN----QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp SSHHHHHHHHHHHHH----TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 356666666666666 46677777777766664 24 566666777776667777777776666653 22
Q ss_pred HHHHHHHHHHHH
Q 019734 169 PAGQFNLGISYL 180 (336)
Q Consensus 169 ~~a~~~Lg~~~~ 180 (336)
+.+++.+|.++.
T Consensus 89 ~~a~~~lg~~~~ 100 (261)
T 3qky_A 89 PQAEYERAMCYY 100 (261)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456666666663
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.1e-15 Score=144.26 Aligned_cols=173 Identities=13% Similarity=0.041 Sum_probs=144.5
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHH--------Hc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--c
Q 019734 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA--------AR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAV--L 166 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~--------~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~ 166 (336)
.++.+.+..| +. .+++++|+..|++++ .. ++..+++.+|.++...|++++|+..|+++++ .
T Consensus 392 ~~~~a~~~~a--~~-----~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 392 TDVAASVLQA--TV-----LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp TSTTHHHHHH--TT-----TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CCcchHHhhc--cc-----ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 4666777666 22 479999999999998 54 5789999999999999999999999999985 4
Q ss_pred CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHH
Q 019734 167 GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYN 238 (336)
Q Consensus 167 ~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~ 238 (336)
+++.+++++|.+|.. ++|+..|+++++. +++.+++++|.+|.. .+++++ +.+|+++++ +++..++++
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~----~g~~~~-~~~~~~al~~~P~~~~a~~~ 539 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL----AGNTDE-HKFYQTVWSTNDGVISAAFG 539 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----HTCCCT-TCHHHHHHHHCTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCChHH-HHHHHHHHHhCCchHHHHHH
Confidence 899999999999998 9999999999875 689999999999998 789999 999999965 578999999
Q ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHH
Q 019734 239 TSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMK 287 (336)
Q Consensus 239 lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~ 287 (336)
+|.+|.... ++++|+.+|+++++. ++..+++++|.++...++.++
T Consensus 540 lg~~~~~~g----~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~ 586 (681)
T 2pzi_A 540 LARARSAEG----DRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSE 586 (681)
T ss_dssp HHHHHHHTT----CHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------
T ss_pred HHHHHHHcC----CHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCC
Confidence 999997633 999999999999875 457889999999987666333
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-13 Score=120.69 Aligned_cols=223 Identities=16% Similarity=0.091 Sum_probs=163.8
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-------C---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------G---STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--- 166 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-------~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--- 166 (336)
.+.+++.+|.+|.. .+++++|+.+|++++.. . ...++..+|.+|...|++++|+.+|+++++.
T Consensus 26 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 26 RLRTLHNLVIQYAS----QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 68899999999998 68999999999999983 2 4578899999999999999999999999854
Q ss_pred -------CCHHHHHHHHHHHHH----HHHHHHHHHHHHc----------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 019734 167 -------GDPAGQFNLGISYLQ----EEAVKLLYQASIA----------GHVRAQYQLALCLHRGRGVDFNLQEAARWYL 225 (336)
Q Consensus 167 -------~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~----------~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~ 225 (336)
....+++.+|.+|.. ++|+.+|+++++. ....++.++|.+|.. .+++++|+.+|+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~ 177 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN----QGKYEEVEYYYQ 177 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHH
Confidence 235678889999887 9999999999764 235678899999988 789999999999
Q ss_pred HHHHC----------CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-----------------CHHHHHHHHHH
Q 019734 226 RAAEG----------GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----------------HGKAQLEHGLG 278 (336)
Q Consensus 226 ~a~~~----------~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~-----------------~~~a~~~lg~~ 278 (336)
++++. ....++..+|.+|.. .+++++|+.+|++++... .......++..
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLK----QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK 253 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc
Confidence 98764 135578889999875 338999999999998631 11223344444
Q ss_pred hhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 279 LFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 279 ~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
+...+.+.++..+++++....+..+.............++.++|....++.++..|
T Consensus 254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 254 QKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ----CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 55567788888888888887766666666666666667888999998888776554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.6e-14 Score=138.08 Aligned_cols=165 Identities=14% Similarity=0.051 Sum_probs=141.9
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH--------H--cCCHHHHHHHHHHHHH----HHHHHHHHHHHH--cCCHH
Q 019734 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAA--------V--LGDPAGQFNLGISYLQ----EEAVKLLYQASI--AGHVR 198 (336)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~--------~--~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~--~~~~~ 198 (336)
+++.+.+..| ...+++++|+..|++++ + .+++++++.+|.++.. ++|+..|+++++ .++..
T Consensus 392 ~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 468 (681)
T 2pzi_A 392 TDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR 468 (681)
T ss_dssp TSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred CCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH
Confidence 4566666666 67899999999999998 4 3688999999999998 999999999976 47999
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHH
Q 019734 199 AQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLE 274 (336)
Q Consensus 199 a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~ 274 (336)
+++++|.+|.. .+++++|+..|+++++ +++..+++++|.+|... +++++ +.+|+++++. +++.++++
T Consensus 469 a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~----g~~~~-~~~~~~al~~~P~~~~a~~~ 539 (681)
T 2pzi_A 469 LVWYRAVAELL----TGDYDSATKHFTEVLDTFPGELAPKLALAATAELA----GNTDE-HKFYQTVWSTNDGVISAAFG 539 (681)
T ss_dssp HHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH----TCCCT-TCHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc----CChHH-HHHHHHHHHhCCchHHHHHH
Confidence 99999999998 8999999999999965 57899999999999763 38888 9999999885 67899999
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHcCcHH--HHHHHHHHH
Q 019734 275 HGLGLFTEGEMMKAVVYLELATRAGETA--ADHVKNVIL 311 (336)
Q Consensus 275 lg~~~~~~~~~~~A~~~~~~A~~~~~~~--a~~~~~~~~ 311 (336)
+|.++...|++++|+.+|+++++.++.. +..+++.++
T Consensus 540 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 540 LARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence 9999999999999999999999886554 444444443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.8e-13 Score=108.76 Aligned_cols=161 Identities=12% Similarity=0.043 Sum_probs=113.9
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGI 177 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~ 177 (336)
.+..++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++...|++++|+.+|+++++..
T Consensus 7 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------- 72 (186)
T 3as5_A 7 RQVYYRDKGISHAK----AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA---------- 72 (186)
T ss_dssp HHHHHHHHHHHHHH----HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred hhHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------
Confidence 35667777777776 57778888888777665 467777777777777777777777777776431
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHH
Q 019734 178 SYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQ 255 (336)
Q Consensus 178 ~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~ 255 (336)
..++.+++.+|.++.. .+++++|+.+|++++. +.+..++..+|.++... +++++
T Consensus 73 ----------------~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~ 128 (186)
T 3as5_A 73 ----------------PDNVKVATVLGLTYVQ----VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL----GRFDE 128 (186)
T ss_dssp ----------------TTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHH
T ss_pred ----------------CCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc----CcHHH
Confidence 1234444555555555 5677777777777754 35677777777777642 27888
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 256 ARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 256 A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
|+.++++++.. .++.+++.+|.++...|++++|..+|++++..
T Consensus 129 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 129 AIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 88888888764 45677788888888888888888888888764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-13 Score=114.23 Aligned_cols=178 Identities=8% Similarity=-0.024 Sum_probs=122.1
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCH---
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S---TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDP--- 169 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~--- 169 (336)
.+.+++.+|..+.. .+++++|+..|++++... + +.+++.+|.+|+..|++++|+..|+++++. +++
T Consensus 3 ~~~~~~~~a~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~ 78 (225)
T 2yhc_A 3 PPNEIYATAQQKLQ----DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 78 (225)
T ss_dssp CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHH
Confidence 56789999999988 689999999999999752 2 479999999999999999999999999865 443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHH------------
Q 019734 170 AGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRA------------ 235 (336)
Q Consensus 170 ~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a------------ 235 (336)
.+++.+|.++.. ........+..++..+.. .+++++|+..|+++++. ++..+
T Consensus 79 ~a~~~~g~~~~~----------~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 79 YVMYMRGLTNMA----------LDDSALQGFFGVDRSDRD----PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHHHH----------HHC--------------C----CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----------hhhhhhhhhhccchhhcC----cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH
Confidence 588999999874 011122233445555554 56778888888877653 22222
Q ss_pred -----HHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCH---HHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 236 -----MYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHG---KAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 236 -----~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~---~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
.+.+|.+|.. .+++++|+..|+++++. +++ .+++.+|.+|...|++++|+..++++...+
T Consensus 145 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTE----RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHH----cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 2456666654 33777777777777764 232 567777777777788888777777776654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-13 Score=116.26 Aligned_cols=162 Identities=14% Similarity=0.082 Sum_probs=136.8
Q ss_pred cCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CC---HHHHHHHHHHHHH----HHHHHHHHHHHHc-----CCHHH
Q 019734 134 RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD---PAGQFNLGISYLQ----EEAVKLLYQASIA-----GHVRA 199 (336)
Q Consensus 134 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~---~~a~~~Lg~~~~~----~~A~~~~~ka~~~-----~~~~a 199 (336)
..++.+++.+|..++..|++++|+..|+++++. ++ +.+++.+|.+|.. ++|+.+|+++++. ..+.+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 367899999999999999999999999999976 56 8999999999998 9999999999985 23689
Q ss_pred HHHHHHHHhcCC----CCccCHHHHHHHHHHHHHC--CCHHHH-----------------HHHHHHHHcCCCCcccHHHH
Q 019734 200 QYQLALCLHRGR----GVDFNLQEAARWYLRAAEG--GYVRAM-----------------YNTSLCYSFGEGLPLSHRQA 256 (336)
Q Consensus 200 ~~~lg~~~~~g~----g~~~~~~~A~~~~~~a~~~--~~~~a~-----------------~~lg~~~~~~~g~~~~~~~A 256 (336)
++.+|.++.... ...+++++|+.+|+++++. ++..+. +.+|.+|... +++++|
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A 167 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERR----ELYEAA 167 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cCHHHH
Confidence 999999987410 0158999999999999764 443333 8899999763 399999
Q ss_pred HHHHHHHHHc--C---CHHHHHHHHHHhhcc----------CCHHHHHHHHHHHHHcC
Q 019734 257 RKWMKRAADC--G---HGKAQLEHGLGLFTE----------GEMMKAVVYLELATRAG 299 (336)
Q Consensus 257 ~~~~~~a~~~--~---~~~a~~~lg~~~~~~----------~~~~~A~~~~~~A~~~~ 299 (336)
+.+|++++.. + .+.+++.+|.+|... |++++|+..|+++++..
T Consensus 168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 9999999985 2 356889999999876 89999999999999864
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=113.95 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=74.9
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH-
Q 019734 107 WGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ- 181 (336)
Q Consensus 107 lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~- 181 (336)
||.++.. .+++++|+..|++++.. .++.+++.+|.+|+..|++++|+.+|+++++. +++.++++||.+|..
T Consensus 3 LG~~~~~----~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRS----KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCC----HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHH----cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 5666665 57778888888877765 35566777888888888888888887777643 566666666666655
Q ss_pred ---HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHH-HHHHHHH--CCCHHHHHHHHHHH
Q 019734 182 ---EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAAR-WYLRAAE--GGYVRAMYNTSLCY 243 (336)
Q Consensus 182 ---~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~-~~~~a~~--~~~~~a~~~lg~~~ 243 (336)
++|+.+|+++++. +++.+++++|.+|.. .+++++|+. +++++++ ++++.++...+.++
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCK----NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 5555555555443 345555555555544 344444333 2344432 34455544444444
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.54 E-value=8.3e-13 Score=106.76 Aligned_cols=152 Identities=17% Similarity=0.146 Sum_probs=113.9
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
.....+...+..|++++|...+.+.++..+. ++.+++.+|.++.. .+++++|+.+|++++.. .++.++..+|
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 83 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAF--DVDVALHLGIAYVK----TGAVDRGTELLERSLADAPDNVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc--ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3456677778999999998777777666554 78999999999998 58999999999999987 5789999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccC
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFN 216 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~ 216 (336)
.++...|++++|+.+|+++++. +++.+++.+|.++.. ++|+.+|+++++. .++.+++.+|.++.. .++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~ 159 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ----MGR 159 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTC
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH----cCC
Confidence 9999999999999999998864 566666776666665 5555555555443 344555555555554 455
Q ss_pred HHHHHHHHHHHH
Q 019734 217 LQEAARWYLRAA 228 (336)
Q Consensus 217 ~~~A~~~~~~a~ 228 (336)
+++|+.+|++++
T Consensus 160 ~~~A~~~~~~~~ 171 (186)
T 3as5_A 160 HEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555553
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-12 Score=114.73 Aligned_cols=248 Identities=13% Similarity=0.033 Sum_probs=173.9
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCC---CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CCH----
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLR---EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GST---- 137 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~~~---- 137 (336)
+..+...+..|++++|...+.+.++..+... ...++..+|.++.. .+++++|..+|++++.. +++
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC----KGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3444455678899999888888887765421 12367888888887 58999999999998864 333
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc----C------CHHHHHHHHHHHHH----HHHHHHHHHHHHcC-------C
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL----G------DPAGQFNLGISYLQ----EEAVKLLYQASIAG-------H 196 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~------~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~-------~ 196 (336)
.++..+|.++...|++++|+.+|+++++. + ...++.++|.++.. ++|..+++++++.. .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 44678999999999999999999998753 1 23566788988887 99999999998642 2
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC----CCHHHHH-----HHHHHHHcCCCCcccHHHHHHHHHHHHHcC
Q 019734 197 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GYVRAMY-----NTSLCYSFGEGLPLSHRQARKWMKRAADCG 267 (336)
Q Consensus 197 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~-----~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~ 267 (336)
..++..+|.++.. .+++++|..+++++... ++...+. .++.++.. .| ++++|..++++++...
T Consensus 174 ~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g---~~~~A~~~~~~a~~~~ 245 (373)
T 1hz4_A 174 LQCLAMLIQCSLA----RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM-TG---DKAAAANWLRHTAKPE 245 (373)
T ss_dssp HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TT---CHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH-CC---CHHHHHHHHHhCCCCC
Confidence 4678889999887 78999999999988643 2211111 23333433 23 8999999999987643
Q ss_pred C------HHHHHHHHHHhhccCCHHHHHHHHHHHHHc----CcH----HHHHHHHHHHhhcChhcHHHHHHHHHHhh
Q 019734 268 H------GKAQLEHGLGLFTEGEMMKAVVYLELATRA----GET----AADHVKNVILQQLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 268 ~------~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~----~~~----~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 330 (336)
. ......+|.++...|++++|...+++++.. +.. .+...++.++ ...++.++|....++..
T Consensus 246 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 246 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY--WQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH--HHhCCHHHHHHHHHHHH
Confidence 2 224578889999999999999999998764 211 1233333333 33455666666555543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-12 Score=114.79 Aligned_cols=186 Identities=16% Similarity=0.126 Sum_probs=145.7
Q ss_pred CChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHH
Q 019734 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAA 156 (336)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A 156 (336)
..|++.+|..+.++..+..+. . + . +..+++++|+.+|.++ |.+|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~--~----------~-~--~~~~~~~~A~~~~~~a------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT--S----------F-M--KWKPDYDSAASEYAKA------------AVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC--C----------S-S--SCSCCHHHHHHHHHHH------------HHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc--c----------c-c--CCCCCHHHHHHHHHHH------------HHHHHHcCCHHHH
Confidence 467888898888877776553 1 1 1 1137899999999886 5678888999999
Q ss_pred HHHHHHHHHc----CC----HHHHHHHHHHHHH----HHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCccC
Q 019734 157 ISLYRQAAVL----GD----PAGQFNLGISYLQ----EEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFN 216 (336)
Q Consensus 157 ~~~~~~a~~~----~~----~~a~~~Lg~~~~~----~~A~~~~~ka~~~----~~----~~a~~~lg~~~~~g~g~~~~ 216 (336)
+.+|.++++. ++ ..++.++|.+|.. ++|+.+|++|++. ++ ..++.++|.+|.. ++
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-----g~ 130 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-----LD 130 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-----TC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-----CC
Confidence 9999998754 33 4577889999987 8999999998764 33 4578899999964 78
Q ss_pred HHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC----HHHHHHHHHHhh
Q 019734 217 LQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGLGLF 280 (336)
Q Consensus 217 ~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~ 280 (336)
+++|+.+|++|++. ++ ..++.++|.+|... +++++|+.+|++++.. +. ...++++|.++.
T Consensus 131 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~ 206 (307)
T 2ifu_A 131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQ----QKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL 206 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence 99999999999753 22 56788999999753 3999999999999873 22 346788999999
Q ss_pred ccCCHHHHHHHHHHHHHcC
Q 019734 281 TEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 281 ~~~~~~~A~~~~~~A~~~~ 299 (336)
..|++++|..+|++++ ..
T Consensus 207 ~~g~~~~A~~~~~~al-~~ 224 (307)
T 2ifu_A 207 HRADYVAAQKCVRESY-SI 224 (307)
T ss_dssp HTTCHHHHHHHHHHHT-TS
T ss_pred HcCCHHHHHHHHHHHh-CC
Confidence 9999999999999998 54
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-12 Score=129.69 Aligned_cols=214 Identities=11% Similarity=0.002 Sum_probs=153.7
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHH
Q 019734 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-DPAGQFNLG 176 (336)
Q Consensus 98 ~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg 176 (336)
...+.+|+.+|.++.. .+++++|+..|.+| +++.++.++|.++...|++++|+++|..|.+.. ++..-..+|
T Consensus 1102 vn~p~vWsqLAKAql~----~G~~kEAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~La 1174 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQ----KGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELI 1174 (1630)
T ss_pred cCCHHHHHHHHHHHHh----CCCHHHHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHH
Confidence 3467788888888888 47888888888876 788888888888888888888888888877653 333444577
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHH
Q 019734 177 ISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQA 256 (336)
Q Consensus 177 ~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A 256 (336)
.+|....-+..++..++..+...+..+|..+.. .+++++|+.+|.++ ..+..++.+|.+.. ++++|
T Consensus 1175 faYAKl~rleele~fI~~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA------~ny~rLA~tLvkLg----e~q~A 1240 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFINGPNNAHIQQVGDRCYD----EKMYDAAKLLYNNV------SNFGRLASTLVHLG----EYQAA 1240 (1630)
T ss_pred HHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhh------hHHHHHHHHHHHhC----CHHHH
Confidence 777661111122233444566677889999888 88999999999986 47778888886642 78888
Q ss_pred HHHHHHHHHcC---------------------------CHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHH--HHH
Q 019734 257 RKWMKRAADCG---------------------------HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD--HVK 307 (336)
Q Consensus 257 ~~~~~~a~~~~---------------------------~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~--~~~ 307 (336)
++.+++|.... +++-...++..|...|.+++|+.+++.|+........ ..+
T Consensus 1241 IEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftEL 1320 (1630)
T 1xi4_A 1241 VDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL 1320 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHH
Confidence 88888874321 3334556777788899999999999999887655443 347
Q ss_pred HHHHhhcChhcHHHHHHHHHHhhcC
Q 019734 308 NVILQQLSATSRDRAMLVVDSWRAM 332 (336)
Q Consensus 308 ~~~~~~~~~~~~~~a~~~~~~~~~~ 332 (336)
+.++....++...++....-+-...
T Consensus 1321 aiLyaKy~peklmEhlk~f~~rini 1345 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRVNI 1345 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccc
Confidence 7887777777776666655544433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-13 Score=106.66 Aligned_cols=128 Identities=13% Similarity=0.066 Sum_probs=111.1
Q ss_pred CCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCH
Q 019734 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKK 153 (336)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~ 153 (336)
...|++++|+..++......++ ++.+++.||.+|.. .+++++|+.+|+++++. +++.+++.+|.+|...|++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p~--~~~~~~~la~~y~~----~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPRQ--KSIKGFYFAKLYYE----AKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHHH--HHTTHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHcChHHHHHHHHHHhcccCcc--cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 4668999998777777766655 77889999999999 69999999999999987 5899999999999999999
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHH-HHHHHHHc--CCHHHHHHHHHHHhc
Q 019734 154 EAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVK-LLYQASIA--GHVRAQYQLALCLHR 209 (336)
Q Consensus 154 ~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~-~~~ka~~~--~~~~a~~~lg~~~~~ 209 (336)
++|+.+|+++++. +++.++++||.+|.. ++|.. ++++|++. +++.++...+.++..
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 9999999999865 789999999999988 55555 56899764 789999999988875
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.46 E-value=7.8e-13 Score=114.34 Aligned_cols=208 Identities=15% Similarity=0.057 Sum_probs=141.4
Q ss_pred CcCCHHHHHHHHHHHHHc-------C---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHH
Q 019734 117 VRKNLDKALDSFLKGAAR-------G---STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----------GDPAGQFNLG 176 (336)
Q Consensus 117 ~~~~~~~A~~~~~~A~~~-------~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg 176 (336)
..+++++|+.+|++|+.. + .+.+++.+|.+|...|++++|+.+|+++++. ..+.++.++|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 367888889988888863 2 3578899999999999999999999999854 2356778888
Q ss_pred HHHHH----HHHHHHHHHHHHc----------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--------C--C
Q 019734 177 ISYLQ----EEAVKLLYQASIA----------GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--------G--Y 232 (336)
Q Consensus 177 ~~~~~----~~A~~~~~ka~~~----------~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--------~--~ 232 (336)
.+|.. ++|+.+|+++++. ....+++++|.+|.. .+++++|+.+|+++++. . .
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN----QGKAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 88887 8888888888764 235678888888887 78888888888888654 1 3
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-----------CHHHHHHHHHHhhccC------CHHHHHHHHHHH
Q 019734 233 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----------HGKAQLEHGLGLFTEG------EMMKAVVYLELA 295 (336)
Q Consensus 233 ~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~-----------~~~a~~~lg~~~~~~~------~~~~A~~~~~~A 295 (336)
..++.++|.+|.. .+++++|+.+|++++... ....+..++..+...+ .+.++..+++..
T Consensus 169 ~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 169 AKTKNNLASCYLK----QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 5677888888865 338888888888887631 1233455555444433 344444444443
Q ss_pred HHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcC
Q 019734 296 TRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAM 332 (336)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 332 (336)
....+..+.............++.++|....++.++.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333334444444444445567788898888877654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.46 E-value=9.6e-12 Score=113.01 Aligned_cols=217 Identities=11% Similarity=-0.033 Sum_probs=169.4
Q ss_pred HHHHhcCCChhHHhhhHHHHHHHHHhCCCCCH----HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----C------
Q 019734 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREA----MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G------ 135 (336)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~------ 135 (336)
..+..++..|++++|...+.+.++..+..++. .++..+|.++.. .+++++|+.+|++++.. +
T Consensus 58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~ 133 (373)
T 1hz4_A 58 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA----QGFLQTAWETQEKAFQLINEQHLEQLPM 133 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence 34445567899999999999988877765554 447889999988 68999999999999874 1
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHH----HHHHHHHHHHHHc----CCH-HH
Q 019734 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-------DPAGQFNLGISYLQ----EEAVKLLYQASIA----GHV-RA 199 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~~~~----~~A~~~~~ka~~~----~~~-~a 199 (336)
...++..+|.++...|++++|+.+++++++.. ...++..+|.++.. ++|+.+++++... +.+ ..
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 213 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 213 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhH
Confidence 23567789999999999999999999998642 24678899999988 9999999999764 222 11
Q ss_pred H--H--HHHHHHhcCCCCccCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc---
Q 019734 200 Q--Y--QLALCLHRGRGVDFNLQEAARWYLRAAEGGY------VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--- 266 (336)
Q Consensus 200 ~--~--~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--- 266 (336)
. . .++.++.. .+++++|..+++++..... ...+..+|.++... +++++|..++++++..
T Consensus 214 ~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~l~~a~~~~~~ 285 (373)
T 1hz4_A 214 ISNANKVRVIYWQM----TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL----GEFEPAEIVLEELNENARS 285 (373)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHh
Confidence 1 1 23344555 7899999999999875432 33567888888653 3999999999999763
Q ss_pred -CC----HHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 267 -GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 267 -~~----~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
+. ..++..+|.++...|++++|..+|++++..
T Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 286 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 22 246788999999999999999999999874
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=106.79 Aligned_cols=157 Identities=10% Similarity=-0.053 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 019734 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-DPAGQFNLGIS 178 (336)
Q Consensus 102 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~ 178 (336)
+.++.+|..+.. .+++++|+.+|++++.. +++.+++.+|.++...|++++|+..|++++... ++.....++.+
T Consensus 7 ~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 7 EQLLKQVSELLQ----QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKL 82 (176)
T ss_dssp TTHHHHHHHHHH----TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHH
Confidence 456777888877 58899999999988765 688899999999999999999999998887543 45444333333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHH
Q 019734 179 YLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQA 256 (336)
Q Consensus 179 ~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A 256 (336)
... . ..+..+|+..|+++++ ++++.+++++|.++... +++++|
T Consensus 83 ~~~---------------------------~----~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~----g~~~~A 127 (176)
T 2r5s_A 83 ELH---------------------------Q----QAAESPELKRLEQELAANPDNFELACELAVQYNQV----GRDEEA 127 (176)
T ss_dssp HHH---------------------------H----HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT----TCHHHH
T ss_pred HHH---------------------------h----hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----ccHHHH
Confidence 221 0 0011234555555543 35566666666666442 266666
Q ss_pred HHHHHHHHHcC--C--HHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 257 RKWMKRAADCG--H--GKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 257 ~~~~~~a~~~~--~--~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
+.+|++++... + +.++.+||.++...|+.++|..+|++++.
T Consensus 128 ~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 128 LELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 66666666543 1 34666667666667777777777766653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-12 Score=115.26 Aligned_cols=189 Identities=16% Similarity=0.072 Sum_probs=147.4
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 019734 118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQASI 193 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~ 193 (336)
.+++++|..++++|.+.... . ++...+++++|+.+|.++ |.+|.. ++|+.+|+++++
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~------~~~~~~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~al~ 64 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S------FMKWKPDYDSAASEYAKA------------AVAFKNAKQLEQAKDAYLQEAE 64 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C------SSSCSCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c------ccCCCCCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHH
Confidence 36889999999998764211 0 111268999999999987 345554 889999999976
Q ss_pred c----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCcccHHHHH
Q 019734 194 A----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQAR 257 (336)
Q Consensus 194 ~----~~----~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~g~~~~~~~A~ 257 (336)
. ++ ..++.++|.+|.. .+++++|+.+|+++++. ++ ..++.++|.+|.. | ++++|+
T Consensus 65 ~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~--g---~~~~A~ 135 (307)
T 2ifu_A 65 AHANNRSLFHAAKAFEQAGMMLKD----LQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP--L---DLSKAV 135 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH----TTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT--T---CHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc--C---CHHHHH
Confidence 4 33 4588999999998 78999999999999754 33 4678899999965 4 999999
Q ss_pred HHHHHHHHc----CC----HHHHHHHHHHhhccCCHHHHHHHHHHHHHc----Cc--HHHHHHHHHHHhhcChhcHHHHH
Q 019734 258 KWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRA----GE--TAADHVKNVILQQLSATSRDRAM 323 (336)
Q Consensus 258 ~~~~~a~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~----~~--~~a~~~~~~~~~~~~~~~~~~a~ 323 (336)
.+|+++++. ++ ..++.++|.+|...|++++|+.+|++++.. +. ..+...+..+..++..++.++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999874 22 466789999999999999999999999974 22 12345566666666678899999
Q ss_pred HHHHHhhcCCCC
Q 019734 324 LVVDSWRAMPSL 335 (336)
Q Consensus 324 ~~~~~~~~~~~~ 335 (336)
..+++.+ ..|.
T Consensus 216 ~~~~~al-~~p~ 226 (307)
T 2ifu_A 216 KCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHT-TSTT
T ss_pred HHHHHHh-CCCC
Confidence 9999988 7764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.9e-12 Score=97.81 Aligned_cols=103 Identities=11% Similarity=0.075 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
.+.++..+|..|+. .+++++|+.+|++|++. .++.+++++|.+|...|++++|+..|+++++. +++.+++++
T Consensus 12 ~a~~~~~~G~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 12 LAQEEKNKGNEYFK----KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 45666777777777 57777777777777765 46777777777777777777777777777643 455555555
Q ss_pred HHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019734 176 GISYLQ----EEAVKLLYQASIA--GHVRAQYQLALC 206 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~ 206 (336)
|.+|.. ++|+.+|+++++. ++++++..|+.|
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 555554 4444444444432 344444444444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.5e-11 Score=104.13 Aligned_cols=229 Identities=8% Similarity=-0.112 Sum_probs=188.4
Q ss_pred HHHHHHhcCCChhH-HhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 68 VLNKIAASFTLPQL-RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 68 ~l~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
++.........+.+ ++|..++...+...|+ +..+++..|.++... +. .++++++.++++++.. .+..+++..+
T Consensus 35 ~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~--~~taWn~R~~~L~~l-~~-~~~~eeL~~~~~~L~~nPk~y~aW~~R~ 110 (306)
T 3dra_A 35 IMGLLLALMKAEEYSERALHITELGINELAS--HYTIWIYRFNILKNL-PN-RNLYDELDWCEEIALDNEKNYQIWNYRQ 110 (306)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTC-TT-SCHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCcH--HHHHHHHHHHHHHHc-cc-ccHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence 34444444444555 5899999999999888 899999999999883 10 4999999999999987 4889999999
Q ss_pred HHH----hcC---CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----H--HHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 145 LMY----WEM---DKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----E--EAVKLLYQASIA--GHVRAQYQLALCL 207 (336)
Q Consensus 145 ~~~----~~~---~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~--~A~~~~~ka~~~--~~~~a~~~lg~~~ 207 (336)
.++ ... +++++++.++.++++. .+..++++.+.++.. + +++.++.++++. .+..|+++.+.++
T Consensus 111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll 190 (306)
T 3dra_A 111 LIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLL 190 (306)
T ss_dssp HHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999 666 7999999999999865 799999999999987 5 999999999886 5889999999998
Q ss_pred hcCCCCccC------HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----CCHHHHHH
Q 019734 208 HRGRGVDFN------LQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----GHGKAQLE 274 (336)
Q Consensus 208 ~~g~g~~~~------~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~ 274 (336)
.. .+. ++++++++++++. +.+..++++++.++.... +..+....+..+.++. ..+.+...
T Consensus 191 ~~----l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~al~~ 263 (306)
T 3dra_A 191 FS----KKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFD---RSITQLEEFSLQFVDLEKDQVTSSFALET 263 (306)
T ss_dssp HS----SGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT---CCGGGGHHHHHTTEEGGGTEESCHHHHHH
T ss_pred Hh----ccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC---CChHHHHHHHHHHHhccCCCCCCHHHHHH
Confidence 76 343 8999999999964 589999999999997653 2456666777776654 37889999
Q ss_pred HHHHhhccCCHHHHHHHHHHHHH-cCcHHHHHHH
Q 019734 275 HGLGLFTEGEMMKAVVYLELATR-AGETAADHVK 307 (336)
Q Consensus 275 lg~~~~~~~~~~~A~~~~~~A~~-~~~~~a~~~~ 307 (336)
|+.+|.+.|+.++|+.+|+++++ .++....+..
T Consensus 264 la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 264 LAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHHHHhccChHHHHHHH
Confidence 99999999999999999999997 5766665554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5e-12 Score=121.93 Aligned_cols=153 Identities=17% Similarity=0.055 Sum_probs=116.3
Q ss_pred ChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHH
Q 019734 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEA 155 (336)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~ 155 (336)
.|++++|...+.+.++..++ ++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|...|++++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ--DFVAWLMLADAELG----MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp -------------------C--CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 36788888888888877666 78999999999988 68999999999999987 578999999999999999999
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCc---cCHHHHHHHH
Q 019734 156 AISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVD---FNLQEAARWY 224 (336)
Q Consensus 156 A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~---~~~~~A~~~~ 224 (336)
|+.+|+++++. +++.+++++|.+|.. ++|+.+|+++++. +++.+++++|.++.. . +++++|+..|
T Consensus 76 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 76 AAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR----LCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hhccccHHHHHHHH
Confidence 99999999865 788999999999988 9999999999875 578899999999987 6 8999999999
Q ss_pred HHHHHC--CCHHHHHHHH
Q 019734 225 LRAAEG--GYVRAMYNTS 240 (336)
Q Consensus 225 ~~a~~~--~~~~a~~~lg 240 (336)
+++++. .+..++..++
T Consensus 152 ~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 152 RAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHTCCCSCHHHHTT
T ss_pred HHHHhcCCcccChHHHhC
Confidence 998764 4555665555
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-11 Score=117.90 Aligned_cols=206 Identities=10% Similarity=-0.041 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhc-------CCCHH-------HHHHHHHHHHH---cCCHHHHHHHHHHHHH-
Q 019734 122 DKALDSFLKGAAR--GSTLAMVDAGLMYWE-------MDKKE-------AAISLYRQAAV---LGDPAGQFNLGISYLQ- 181 (336)
Q Consensus 122 ~~A~~~~~~A~~~--~~~~a~~~lg~~~~~-------~~~~~-------~A~~~~~~a~~---~~~~~a~~~Lg~~~~~- 181 (336)
.+++..|++|+.. .++..++.+|.++.. .|+++ +|+..|++|++ ++++..++.+|.++..
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4788899999886 689999999999985 68876 99999999986 3689999999999887
Q ss_pred ---HHHHHHHHHHHHcC--CH-HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccH
Q 019734 182 ---EEAVKLLYQASIAG--HV-RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSH 253 (336)
Q Consensus 182 ---~~A~~~~~ka~~~~--~~-~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~g~~~~~ 253 (336)
++|...|+++++.. ++ .++..+|.++.. .+++++|+..|++|++.. ....+...+.+..... ++.
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~---~~~ 407 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS---KDK 407 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHT---CCH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHc---CCh
Confidence 99999999999864 44 589999999877 688999999999998753 3444444444422222 389
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC--cHH--HHHHHHHHHhhcChhcHHHHHHHHH
Q 019734 254 RQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETA--ADHVKNVILQQLSATSRDRAMLVVD 327 (336)
Q Consensus 254 ~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~--~~~--a~~~~~~~~~~~~~~~~~~a~~~~~ 327 (336)
++|...|+++++. +++..+.+++.++...|++++|..+|++++... +++ ...+...+......++.+.+..+.+
T Consensus 408 ~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 408 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999874 678889999999999999999999999999864 222 1122222222233356677777777
Q ss_pred HhhcCCC
Q 019734 328 SWRAMPS 334 (336)
Q Consensus 328 ~~~~~~~ 334 (336)
+..+..|
T Consensus 488 r~~~~~p 494 (530)
T 2ooe_A 488 RRFTAFR 494 (530)
T ss_dssp HHHHHTH
T ss_pred HHHHHCc
Confidence 6665554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-12 Score=124.81 Aligned_cols=142 Identities=18% Similarity=0.009 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHH
Q 019734 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQ 190 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~k 190 (336)
+++++|+.+|+++++. +++.+++.+|.++...|++++|+.+|+++++. +++.+++++|.+|.. ++|+.+|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6788899999988876 57888889999998889999988888888765 556666666666655 555555555
Q ss_pred HHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 019734 191 ASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 265 (336)
Q Consensus 191 a~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~ 265 (336)
+++. +++.+++++|.+|.. .+++++|+.+|+++++ +++..++.++|.++.... ..+++++|...|+++++
T Consensus 83 al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALED----AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC-DWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CCTTHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-ccccHHHHHHHHHHHHh
Confidence 5443 344455555555544 4445555555555433 234444444444443320 00244444444444444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=6.3e-12 Score=110.68 Aligned_cols=158 Identities=8% Similarity=-0.062 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
+.++++.+|..+.. .+++++|+..|++++.. +++.+++.||.++...|++++|+..|++++.. +.......+
T Consensus 116 ~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQ----ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred chhhHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 55666666666665 46666666666666654 45666666666666666666666666665533 222222222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccH
Q 019734 176 GISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSH 253 (336)
Q Consensus 176 g~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~ 253 (336)
+..+.. .++...|+..|++++ .++++.+++++|.+|.... ++
T Consensus 192 ----------------------------~~~l~~----~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g----~~ 235 (287)
T 3qou_A 192 ----------------------------QIELLX----QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVG----RN 235 (287)
T ss_dssp ----------------------------HHHHHH----HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----CH
T ss_pred ----------------------------HHHHHh----hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcc----cH
Confidence 222222 233444555555553 2355666666666664422 66
Q ss_pred HHHHHHHHHHHHc--CC--HHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 254 RQARKWMKRAADC--GH--GKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 254 ~~A~~~~~~a~~~--~~--~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
++|+..|++++.. ++ ..++.+||.++...|+.++|..+|++++.
T Consensus 236 ~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 236 EEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 6666666666653 22 45666666666666666666666666653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.7e-12 Score=96.85 Aligned_cols=104 Identities=15% Similarity=0.098 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCL 207 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~ 207 (336)
.++++.++|..|+..|++++|+.+|+++++. .++.+++++|.+|.. ++|+.+|+++++. .++.+++++|.+|
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3567788999999999999999999999854 678888888888877 7777777777664 4677777777777
Q ss_pred hcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHH
Q 019734 208 HRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCY 243 (336)
Q Consensus 208 ~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~ 243 (336)
.. .+++++|+.+|+++++ +++..++..|+.|+
T Consensus 92 ~~----~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 92 VA----MREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HH----CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 76 6777777777777743 46677777776654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=8.8e-12 Score=109.77 Aligned_cols=162 Identities=10% Similarity=-0.050 Sum_probs=118.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 019734 120 NLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLLYQASIAGHVRA 199 (336)
Q Consensus 120 ~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a 199 (336)
+.+.-..++.... .++.++++.+|..+...|++++|+..|+++++. +.+++.+
T Consensus 101 ~~~~l~~~l~~~l-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------------------------~P~~~~a 153 (287)
T 3qou_A 101 PEEAIRALLDXVL-PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--------------------------SNQNGEI 153 (287)
T ss_dssp CHHHHHHHHHHHS-CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------TTSCHHH
T ss_pred CHHHHHHHHHHHc-CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------------------------CCcchhH
Confidence 3444444444443 467788999999999999999999998888732 3344455
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 200 QYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEH 275 (336)
Q Consensus 200 ~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l 275 (336)
++.||.++.. .+++++|+.+|++++. +.........+..+.. ..+.++|+..|++++.. +++.++++|
T Consensus 154 ~~~la~~~~~----~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~----~~~~~~a~~~l~~al~~~P~~~~~~~~l 225 (287)
T 3qou_A 154 GLLLAETLIA----LNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLX----QAADTPEIQQLQQQVAENPEDAALATQL 225 (287)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHH----HHTSCHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHh----hcccCccHHHHHHHHhcCCccHHHHHHH
Confidence 5555555555 7889999999988854 3334444555554543 22677899999999875 778999999
Q ss_pred HHHhhccCCHHHHHHHHHHHHHcC--c--HHHHHHHHHHHhhcCh
Q 019734 276 GLGLFTEGEMMKAVVYLELATRAG--E--TAADHVKNVILQQLSA 316 (336)
Q Consensus 276 g~~~~~~~~~~~A~~~~~~A~~~~--~--~~a~~~~~~~~~~~~~ 316 (336)
|.++...|++++|+..|+++++.. + ..+...+..++..+..
T Consensus 226 a~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 226 ALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 999999999999999999999864 3 5677777777776644
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.4e-10 Score=108.11 Aligned_cols=212 Identities=9% Similarity=-0.017 Sum_probs=168.3
Q ss_pred HhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCC---CcCCHH-------HHHHHHHHHHH-c--CCHHHHHHHHHHHh
Q 019734 82 RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG---VRKNLD-------KALDSFLKGAA-R--GSTLAMVDAGLMYW 148 (336)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g---~~~~~~-------~A~~~~~~A~~-~--~~~~a~~~lg~~~~ 148 (336)
..+..++.+.+...|. ++.+++.+|.++..-.. ..++++ +|+..|++|+. . .+...++.+|.++.
T Consensus 255 ~~a~~~y~~al~~~p~--~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3667788888888877 89999999999874000 024665 99999999996 3 57999999999999
Q ss_pred cCCCHHHHHHHHHHHHHc--CCH-HHHHHHHHHHHH----HHHHHHHHHHHHcC--CHHHHHHHHHH-HhcCCCCccCHH
Q 019734 149 EMDKKEAAISLYRQAAVL--GDP-AGQFNLGISYLQ----EEAVKLLYQASIAG--HVRAQYQLALC-LHRGRGVDFNLQ 218 (336)
Q Consensus 149 ~~~~~~~A~~~~~~a~~~--~~~-~a~~~Lg~~~~~----~~A~~~~~ka~~~~--~~~a~~~lg~~-~~~g~g~~~~~~ 218 (336)
..|++++|+..|+++++. .++ .++..+|.++.. ++|+..|++|++.. ....+...+.+ +.. .++++
T Consensus 333 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~----~~~~~ 408 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC----SKDKS 408 (530)
T ss_dssp HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH----TCCHH
T ss_pred hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH----cCChh
Confidence 999999999999999986 344 588999988866 99999999999763 34555555544 333 58899
Q ss_pred HHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CHH----HHHHHHHHhhccCCHHHHHH
Q 019734 219 EAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGK----AQLEHGLGLFTEGEMMKAVV 290 (336)
Q Consensus 219 ~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~--~~~----a~~~lg~~~~~~~~~~~A~~ 290 (336)
+|+.+|+++++ ++++..+..++.++.. .| +.++|..+|++++... ++. .+..........|+.+.+..
T Consensus 409 ~A~~~~e~al~~~p~~~~~~~~~~~~~~~-~g---~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~ 484 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPEYVLAYIDYLSH-LN---EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 484 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTT-TT---CHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHh-CC---CHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999965 5789999999998854 33 9999999999999863 332 55555666677899999999
Q ss_pred HHHHHHHcCcHHH
Q 019734 291 YLELATRAGETAA 303 (336)
Q Consensus 291 ~~~~A~~~~~~~a 303 (336)
+++++++.-+.++
T Consensus 485 ~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 485 VEKRRFTAFREEY 497 (530)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHCchhc
Confidence 9999998766444
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-12 Score=104.18 Aligned_cols=157 Identities=8% Similarity=-0.046 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNL 217 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~ 217 (336)
+..+.+|..+...|++++|+..|+++++ .+.+++.+++.+|.+|.. .+++
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--------------------------~~P~~~~a~~~la~~~~~----~g~~ 56 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSD--------------------------ELQSRGDVKLAKADCLLE----TKQF 56 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCH--------------------------HHHTSHHHHHHHHHHHHH----TTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------HCCCcHHHHHHHHHHHHH----CCCH
Confidence 3466778888888888888888777653 233455555555555555 6788
Q ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 019734 218 QEAARWYLRAAEGG-YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLEL 294 (336)
Q Consensus 218 ~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 294 (336)
++|+..|++++... ++.....++.+...+.+ +..+|+..|++++.. +++.+++++|.++...|++++|+.+|++
T Consensus 57 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~---~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 133 (176)
T 2r5s_A 57 ELAQELLATIPLEYQDNSYKSLIAKLELHQQA---AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWN 133 (176)
T ss_dssp HHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHH---TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCChHHHHHHHHHHHHhhc---ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 88888888875433 55555555544322111 233579999999885 6789999999999999999999999999
Q ss_pred HHHcCc----HHHHHHHHHHHhhcChhcHHHHHHHHHHh
Q 019734 295 ATRAGE----TAADHVKNVILQQLSATSRDRAMLVVDSW 329 (336)
Q Consensus 295 A~~~~~----~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 329 (336)
+++..+ ..+...++.++..+. +.++|....++.
T Consensus 134 ~l~~~p~~~~~~a~~~l~~~~~~~g--~~~~A~~~y~~a 170 (176)
T 2r5s_A 134 ILKVNLGAQDGEVKKTFMDILSALG--QGNAIASKYRRQ 170 (176)
T ss_dssp HHTTCTTTTTTHHHHHHHHHHHHHC--SSCHHHHHHHHH
T ss_pred HHHhCcccChHHHHHHHHHHHHHhC--CCCcHHHHHHHH
Confidence 998763 347777777666553 344455554443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-11 Score=103.22 Aligned_cols=176 Identities=13% Similarity=-0.025 Sum_probs=138.5
Q ss_pred hHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC---HH
Q 019734 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLRE-AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GS---TL 138 (336)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~---~~ 138 (336)
+......+...+..|++++|+..+.++++..|.... ..+++.+|.+|.. .+++++|+..|+++++. ++ +.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~~l~~~P~~~~~~~ 79 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQAAIDRFIRLNPTHPNIDY 79 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcCCCcHHH
Confidence 345677788888999999999999999998776433 5899999999999 68999999999999986 23 35
Q ss_pred HHHHHHHHHhc------------------CCCHHHHHHHHHHHHHc--CCHHHH---HHHHHHHHHHHHHHHHHHHHHcC
Q 019734 139 AMVDAGLMYWE------------------MDKKEAAISLYRQAAVL--GDPAGQ---FNLGISYLQEEAVKLLYQASIAG 195 (336)
Q Consensus 139 a~~~lg~~~~~------------------~~~~~~A~~~~~~a~~~--~~~~a~---~~Lg~~~~~~~A~~~~~ka~~~~ 195 (336)
+++.+|.++.. .|++++|+..|+++++. +++.+. ..++.+.. .
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~--------------~ 145 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD--------------R 145 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH--------------H
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH--------------H
Confidence 89999999875 57899999999999975 454433 22222221 1
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCH---HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019734 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYV---RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 266 (336)
Q Consensus 196 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~---~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~ 266 (336)
.....+.+|.+|.. .+++.+|+..|+++++. +++ .+++.+|.+|.... ++++|+..++++...
T Consensus 146 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g----~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 146 LAKYEYSVAEYYTE----RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQ----MNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH----cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcC----CcHHHHHHHHHHHhh
Confidence 12344678999988 89999999999999865 343 78999999997643 999999999988764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.37 E-value=6.3e-11 Score=121.01 Aligned_cols=228 Identities=15% Similarity=0.084 Sum_probs=166.1
Q ss_pred HHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 019734 72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD 151 (336)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~ 151 (336)
+..+...|.+++|..+|++.- . ...+. ..++.. .+++++|+++++++ ..+.+|+++|..+...|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~----~--~~~A~---~VLie~----i~nldrAiE~Aerv---n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD----V--NTSAV---QVLIEH----IGNLDRAYEFAERC---NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC----C--HHHHH---HHHHHH----HhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCC
Confidence 444567788888876666542 2 22222 333323 46889999888865 77999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 019734 152 KKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLR 226 (336)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~ 226 (336)
++++|+..|.+| +++.++..+|.++.. ++|+++|++|.+.. ++.....+|.+|.. .+++++ ++.|
T Consensus 1120 ~~kEAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAK----l~rlee-le~f-- 1189 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK----TNRLAE-LEEF-- 1189 (1630)
T ss_pred CHHHHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHh----hcCHHH-HHHH--
Confidence 999999999876 899999999999998 99999999997754 44455579999987 566664 4444
Q ss_pred HHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH-----
Q 019734 227 AAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET----- 301 (336)
Q Consensus 227 a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~----- 301 (336)
++..+...+..+|..+.. .+++++|..+|.++ ..+..++.+|...|++++|+..+++|......
T Consensus 1190 -I~~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1190 -INGPNNAHIQQVGDRCYD----EKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCF 1258 (1630)
T ss_pred -HhCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhh------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHH
Confidence 355566788899999975 33999999999997 36789999999999999999999998432210
Q ss_pred --------------------HHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCCC
Q 019734 302 --------------------AADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 336 (336)
Q Consensus 302 --------------------~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (336)
.+......+..+...+..++++.+...-+.+.+.|
T Consensus 1259 acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred HHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH
Confidence 01112222223335566777777777766666655
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-11 Score=96.30 Aligned_cols=100 Identities=15% Similarity=0.079 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHH
Q 019734 195 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGK 270 (336)
Q Consensus 195 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~ 270 (336)
+++.+++.+|.++.. .+++++|+.+|++++. +.++.+++++|.+|.... ++++|+.+|++++.. +++.
T Consensus 34 ~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g----~~~~Ai~~~~~al~l~P~~~~ 105 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYN----KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE----QFQQAADLYAVAFALGKNDYT 105 (151)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----cHHHHHHHHHHHHhhCCCCcH
Confidence 366788999999888 8999999999999965 578999999999997633 999999999999875 6789
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHcCcHH
Q 019734 271 AQLEHGLGLFTEGEMMKAVVYLELATRAGETA 302 (336)
Q Consensus 271 a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 302 (336)
+++++|.+|...|++++|+.+|+++++..+..
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999976443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-10 Score=101.55 Aligned_cols=161 Identities=9% Similarity=-0.036 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST------LAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD 168 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~------~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~ 168 (336)
...+...+..+.. .+++++|+.+|+++++.. .. ..++.+|.++...|++++|+.+|+++++. .+
T Consensus 75 ~~~l~~~~~~~~~----~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 75 KKQFKDQVIMLCK----QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 3444455555555 456777777776666542 11 23445666666666666666666666542 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH---C--CC----HHHHHHH
Q 019734 169 PAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE---G--GY----VRAMYNT 239 (336)
Q Consensus 169 ~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~---~--~~----~~a~~~l 239 (336)
.. ....+++++|.+|.. .+++++|+.+|+++++ . ++ ..+++++
T Consensus 151 ~~------------------------~~~~~~~~lg~~y~~----~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nl 202 (293)
T 2qfc_A 151 VY------------------------QNLYIENAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202 (293)
T ss_dssp TT------------------------HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred hH------------------------HHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhH
Confidence 00 013456667777776 6788888888888762 1 22 2578888
Q ss_pred HHHHHcCCCCcccHHHHHHHHHHHHHcC--------CHHHHHHHHHHhhccCCHHHH-HHHHHHHHH
Q 019734 240 SLCYSFGEGLPLSHRQARKWMKRAADCG--------HGKAQLEHGLGLFTEGEMMKA-VVYLELATR 297 (336)
Q Consensus 240 g~~~~~~~g~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~~~~~~~A-~~~~~~A~~ 297 (336)
|.+|... +++++|+.++++++... ...+++++|.+|...|++++| ..+|++|+.
T Consensus 203 g~~y~~~----~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 203 AKALYLD----SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHT----TCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHH----hhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 8888753 38899999998887631 156789999999999999999 888999876
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.31 E-value=5.5e-12 Score=100.20 Aligned_cols=91 Identities=15% Similarity=0.082 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
++.+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.+|...|++++|+..|++++.. +++.+++++
T Consensus 35 ~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 35 MMDDIYSYAYDFYN----KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 56677778877777 57788888888887776 46777888888888788888888877777643 566666666
Q ss_pred HHHHHH----HHHHHHHHHHHHc
Q 019734 176 GISYLQ----EEAVKLLYQASIA 194 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~ 194 (336)
|.+|.. ++|+.+|+++++.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 666665 5555555555554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.1e-12 Score=109.94 Aligned_cols=184 Identities=13% Similarity=0.053 Sum_probs=147.3
Q ss_pred HHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHH-------HHHHhcCCCHHHHHHHHHHHHHc--CC----
Q 019734 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDA-------GLMYWEMDKKEAAISLYRQAAVL--GD---- 168 (336)
Q Consensus 104 ~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~l-------g~~~~~~~~~~~A~~~~~~a~~~--~~---- 168 (336)
++..|.-+. .+|...|...|.+++.. +..++|..+ +.++....+..+++..+++++.. +.
T Consensus 10 ~~~~~~~~~-----~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~ 84 (282)
T 4f3v_A 10 LFESAVSML-----PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNAR 84 (282)
T ss_dssp HHHHHHHHT-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCE
T ss_pred HHHHHhccc-----CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Confidence 444555442 57999999999999887 578999988 88888888888999999988862 11
Q ss_pred -----------------HHHHHHHHHHHHH----HHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 019734 169 -----------------PAGQFNLGISYLQ----EEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYL 225 (336)
Q Consensus 169 -----------------~~a~~~Lg~~~~~----~~A~~~~~ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~ 225 (336)
.+....++.++.. ++|.+.|...+..+ +. +.|.+|.++.. .+++++|+.+|+
T Consensus 85 ~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~----~~r~~dA~~~l~ 159 (282)
T 4f3v_A 85 IAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGA----AERWTDVIDQVK 159 (282)
T ss_dssp EECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH----TTCHHHHHHHHT
T ss_pred hccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH----cCCHHHHHHHHH
Confidence 2344456666666 89999998876543 45 89999999998 899999999999
Q ss_pred HHHHCCC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 019734 226 RAAEGGY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----HGKAQLEHGLGLFTEGEMMKAVVYLELAT 296 (336)
Q Consensus 226 ~a~~~~~----~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~A~ 296 (336)
++....+ ..+++++|.++.... ++++|+.||++++... .+++.+++|.++.++|+.++|...|+++.
T Consensus 160 ~a~~~~d~~~~~~a~~~LG~al~~LG----~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 160 SAGKWPDKFLAGAAGVAHGVAAANLA----LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhhccCCcccHHHHHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8866543 358999999996533 9999999999998643 34688999999999999999999999999
Q ss_pred HcCcH
Q 019734 297 RAGET 301 (336)
Q Consensus 297 ~~~~~ 301 (336)
...+.
T Consensus 236 a~~P~ 240 (282)
T 4f3v_A 236 TTHPE 240 (282)
T ss_dssp HHSCC
T ss_pred hcCCc
Confidence 87654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.9e-11 Score=98.82 Aligned_cols=121 Identities=21% Similarity=0.202 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGIS 178 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 178 (336)
+..++.+|.++.. .+++++|+.+|++++. .++.+++.+|.+|...|++++|+.+|+++++. +++.+++++|.+
T Consensus 6 ~~~~~~~g~~~~~----~~~~~~A~~~~~~a~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAAD----KKDWKGALDAFSAVQD-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHTSSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHHHcC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 4456778888877 5788888888888863 36788888888888888888888888888754 566777777777
Q ss_pred HHH----HHHHHHHHHHHHcC--C----------------HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC
Q 019734 179 YLQ----EEAVKLLYQASIAG--H----------------VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 230 (336)
Q Consensus 179 ~~~----~~A~~~~~ka~~~~--~----------------~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~ 230 (336)
|.. ++|+.+|+++++.. + +.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK----KEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTT
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH----ccCHHHHHHHHHHHHHc
Confidence 766 66666666666531 1 2555556655555 55556666665555543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.4e-11 Score=103.90 Aligned_cols=120 Identities=8% Similarity=-0.060 Sum_probs=86.8
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCC----CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC----
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLR----EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS---- 136 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~~---- 136 (336)
+..+...+..|++++|...+.+.++..+... ....++.+|.++.. .+++++|+.+|++|+.. .+
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK----KVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHT----SSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 4566667789999999998888887755421 22456778888877 57999999999999964 11
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CCH----HHHHHHHHHHHH----HHHHHHHHHHH
Q 019734 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL-----GDP----AGQFNLGISYLQ----EEAVKLLYQAS 192 (336)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~----~a~~~Lg~~~~~----~~A~~~~~ka~ 192 (336)
..+++.+|.+|...|++++|+.+|+++++. ++. .+++++|.+|.. ++|+.+|++++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 568899999999999999999999999832 221 344555555544 44444444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-10 Score=102.93 Aligned_cols=159 Identities=13% Similarity=-0.005 Sum_probs=85.2
Q ss_pred HHhcCCChhHHhhhHHHHHHHHHhCCCCC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC----HHH
Q 019734 72 IAASFTLPQLRAASLVCKSWNDALRPLRE----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLA 139 (336)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a 139 (336)
+...+..+++++|...+.+..+..+..++ ...++.+|.++.. .+++++|+.+|++|+.. .+ ..+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK----KVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT----SSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc----ccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 34444555555555555555443322111 1122234554443 34555555555555542 11 224
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCc
Q 019734 140 MVDAGLMYWEMDKKEAAISLYRQAAVL-----GDPAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVD 214 (336)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~ 214 (336)
+.++|.+|...|++++|+.+|+++++. ++. .....+++++|.+|.. .
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------~~~~~~~~nlg~~y~~----~ 209 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE------------------------EFDVKVRYNHAKALYL----D 209 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH------------------------HHHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch------------------------hHHHHHHHHHHHHHHH----H
Confidence 555555555555555555555555421 010 0123466777777776 6
Q ss_pred cCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 019734 215 FNLQEAARWYLRAAEG----G----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 265 (336)
Q Consensus 215 ~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~ 265 (336)
+++++|+.+++++++. + .+.+++++|.+|.... +++++|+.+|++|+.
T Consensus 210 ~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE---YEEAEIEDAYKKASF 265 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhC---CcHHHHHHHHHHHHH
Confidence 7778888877777542 1 2677778888876522 146788888888775
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-10 Score=96.48 Aligned_cols=127 Identities=19% Similarity=0.143 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccC
Q 019734 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFN 216 (336)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~ 216 (336)
...++.+|.++...|++++|+..|+++++. ++.+++++|.+|.. .++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~--------------------------------~g~ 52 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTI--------------------------------LKN 52 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHH--------------------------------TTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHH--------------------------------cCC
Confidence 345678888888888888888888887633 55555555555544 455
Q ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC------------------CHHHHHHHH
Q 019734 217 LQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG------------------HGKAQLEHG 276 (336)
Q Consensus 217 ~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~------------------~~~a~~~lg 276 (336)
+++|+.+|++++. +.++.+++++|.+|.... ++++|+.+|++++... .+.+++++|
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (213)
T 1hh8_A 53 MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE----KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA 128 (213)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc----cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHH
Confidence 5555555555543 345555666666654422 5666666666665531 136778888
Q ss_pred HHhhccCCHHHHHHHHHHHHHcCc
Q 019734 277 LGLFTEGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 277 ~~~~~~~~~~~A~~~~~~A~~~~~ 300 (336)
.+|...|++++|..+|+++++..+
T Consensus 129 ~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 129 FMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHccCHHHHHHHHHHHHHcCc
Confidence 888888888888888888887654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-11 Score=112.98 Aligned_cols=226 Identities=10% Similarity=-0.025 Sum_probs=105.7
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGL 145 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~ 145 (336)
.....+......|++.+|+..|.+. +++.++..++..+.. .+++++|+.+++.+.+. .++.....|+.
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~----~g~~EeAi~yl~~ark~~~~~~i~~~Li~ 102 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANT----SGNWEELVKYLQMARKKARESYVETELIF 102 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCccchhHHHHHH
Confidence 3345555667778888887666542 255577777776665 57888888888877764 34566777888
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHH
Q 019734 146 MYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 221 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~ 221 (336)
+|.+.|+++++..+++. .+..++..+|..+.. ++|+.+|.++ ..+..||.|+.. .+++++|+
T Consensus 103 ~Y~Klg~l~e~e~f~~~----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------~n~~~LA~~L~~----Lg~yq~AV 168 (449)
T 1b89_A 103 ALAKTNRLAELEEFING----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVH----LGEYQAAV 168 (449)
T ss_dssp ------CHHHHTTTTTC----C----------------CTTTHHHHHHHT------TCHHHHHHHHHT----TTCHHHHH
T ss_pred HHHHhCCHHHHHHHHcC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh------hhHHHHHHHHHH----hccHHHHH
Confidence 88888888888777753 344588888888887 8899999877 467888999888 88899999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC--
Q 019734 222 RWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG-- 299 (336)
Q Consensus 222 ~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~-- 299 (336)
+.|+++ +++..|-.+..++.... +++.|..+... +. -+++-...+..+|.+.|.+++|+.+++.++...
T Consensus 169 ea~~KA---~~~~~Wk~v~~aCv~~~----ef~lA~~~~l~-L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~a 239 (449)
T 1b89_A 169 DGARKA---NSTRTWKEVCFACVDGK----EFRLAQMCGLH-IV-VHADELEELINYYQDRGYFEELITMLEAALGLERA 239 (449)
T ss_dssp HHHHHH---TCHHHHHHHHHHHHHTT----CHHHHHHTTTT-TT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHc---CCchhHHHHHHHHHHcC----cHHHHHHHHHH-HH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH
Confidence 999988 57888888777775533 88888666664 22 456666678888999999999999999998764
Q ss_pred cHHHHHHHHHHHhhcChhcHHHHHHHH
Q 019734 300 ETAADHVKNVILQQLSATSRDRAMLVV 326 (336)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~a~~~~ 326 (336)
+...-..++.++....++...++....
T Consensus 240 h~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 240 HMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 567777788888887777666665544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-10 Score=86.80 Aligned_cols=127 Identities=21% Similarity=0.282 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 019734 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISY 179 (336)
Q Consensus 102 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~ 179 (336)
.+++.+|.++.. .+++++|+.+|++++.. .+..+++.+|.++...|++++|+.+|++++...
T Consensus 2 ~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------ 65 (136)
T 2fo7_A 2 EAWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------------ 65 (136)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------
T ss_pred cHHHHHHHHHHH----cCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC------------
Confidence 345666666666 46667777777766654 356666666666666666666666666665431
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHH
Q 019734 180 LQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQAR 257 (336)
Q Consensus 180 ~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~ 257 (336)
..++.+++.+|.++.. .+++++|+.++++++.. .+..+++.+|.++... +++++|.
T Consensus 66 --------------~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~ 123 (136)
T 2fo7_A 66 --------------PRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ----GDYDEAI 123 (136)
T ss_dssp --------------TTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT----TCHHHHH
T ss_pred --------------CCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH----ccHHHHH
Confidence 1234445555555555 56666666666666443 4566666666666542 2666666
Q ss_pred HHHHHHHHc
Q 019734 258 KWMKRAADC 266 (336)
Q Consensus 258 ~~~~~a~~~ 266 (336)
.++++++..
T Consensus 124 ~~~~~~~~~ 132 (136)
T 2fo7_A 124 EYYQKALEL 132 (136)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcc
Confidence 666666553
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.5e-12 Score=117.21 Aligned_cols=221 Identities=10% Similarity=0.017 Sum_probs=86.7
Q ss_pred CChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHH
Q 019734 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAA 156 (336)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A 156 (336)
..|++++|. .+.+.. +++.+|..||.++.. .+++++|+..|.++ .++.++..++..+...|++++|
T Consensus 15 ~~~~ld~A~----~fae~~---~~~~vWs~La~A~l~----~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 15 HIGNLDRAY----EFAERC---NEPAVWSQLAKAQLQ----KGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHH----HHHHhC---CChHHHHHHHHHHHH----cCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHHHH
Confidence 446788885 444443 356799999999999 58999999999875 6788999999999999999999
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC
Q 019734 157 ISLYRQAAVL-GDPAGQFNLGISYLQ----EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 231 (336)
Q Consensus 157 ~~~~~~a~~~-~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~ 231 (336)
+.+++.+.+. .++.....|+.+|.. .++..+|+. .+..++..+|..|.. .+.+++|+.+|.++
T Consensus 81 i~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~----pn~~a~~~IGd~~~~----~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 81 VKYLQMARKKARESYVETELIFALAKTNRLAELEEFING----PNNAHIQQVGDRCYD----EKMYDAAKLLYNNV---- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTTC----C--------------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC----CcHHHHHHHHHHHHH----cCCHHHHHHHHHHh----
Confidence 9999998865 455666778888876 556666642 455699999999998 89999999999987
Q ss_pred CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 019734 232 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVIL 311 (336)
Q Consensus 232 ~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~ 311 (336)
..+..|+.++.+.. ++++|++.|+++ +++..+..++.++...|+++.|..+... +...+.+.. ..+.
T Consensus 149 --~n~~~LA~~L~~Lg----~yq~AVea~~KA---~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~---~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLG----EYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELE---ELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTT----CHHHHHHHHHHH---TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHH---HHHH
T ss_pred --hhHHHHHHHHHHhc----cHHHHHHHHHHc---CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHH---HHHH
Confidence 57889999997644 999999999999 5899999999999999999999777665 222222322 3333
Q ss_pred hhcChhcHHHHHHHHHHhhcCCCCC
Q 019734 312 QQLSATSRDRAMLVVDSWRAMPSLH 336 (336)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (336)
.+...+..+++..+.+.-..+.+.|
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le~ah 240 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLERAH 240 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred HHHHCCCHHHHHHHHHHHhCCcHHH
Confidence 3455678888988888888777766
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-11 Score=109.61 Aligned_cols=132 Identities=16% Similarity=0.102 Sum_probs=82.9
Q ss_pred hhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC---------------HHHHH
Q 019734 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GS---------------TLAMV 141 (336)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~---------------~~a~~ 141 (336)
.++.+|...+....+..+. .+.+++.+|.+|.. .+++++|+.+|++|+.. .+ ..+++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~--~a~~~~~~g~~~~~----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~ 200 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLE--QSTIVKERGTVYFK----EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 200 (336)
T ss_dssp EEEECCCCGGGCCHHHHHH--HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHH--HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHH
Confidence 3344454444444443333 56777778888777 57888888888888775 23 46777
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCC
Q 019734 142 DAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGV 213 (336)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~ 213 (336)
++|.+|...|++++|+.+|+++++. +++.+++++|.+|.. ++|+.+|+++++. ++..++.++|.++..
T Consensus 201 nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~---- 276 (336)
T 1p5q_A 201 NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR---- 276 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----
Confidence 7777777777777777777777654 456666666666665 5555555555543 355555555555554
Q ss_pred ccCHHHH
Q 019734 214 DFNLQEA 220 (336)
Q Consensus 214 ~~~~~~A 220 (336)
.+++++|
T Consensus 277 ~~~~~~a 283 (336)
T 1p5q_A 277 IRRQLAR 283 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4445444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4.9e-10 Score=98.58 Aligned_cols=93 Identities=12% Similarity=0.036 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH----C-C----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--
Q 019734 198 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAE----G-G----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-- 266 (336)
Q Consensus 198 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~----~-~----~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-- 266 (336)
.++.++|.+|.. .+++++|+.+|+++++ . + ...+++++|.+|.... ++++|+.+++++++.
T Consensus 156 ~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~----~y~~A~~~~~~al~~~~ 227 (293)
T 3u3w_A 156 YIENAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS----RYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHH
Confidence 357778888877 7889999999999874 1 2 3457899999997633 999999999999873
Q ss_pred --C----CHHHHHHHHHHhhccC-CHHHHHHHHHHHHHc
Q 019734 267 --G----HGKAQLEHGLGLFTEG-EMMKAVVYLELATRA 298 (336)
Q Consensus 267 --~----~~~a~~~lg~~~~~~~-~~~~A~~~~~~A~~~ 298 (336)
+ .+.+++++|.+|...| ++++|..+|++|+..
T Consensus 228 ~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 1 1678899999999999 579999999999863
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.25 E-value=4.8e-10 Score=85.09 Aligned_cols=129 Identities=22% Similarity=0.287 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNL 217 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~ 217 (336)
.+++.+|.++...|++++|+.+|+++++.. ..+..+++.+|.++.. .+++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~~a~~~~~----~~~~ 51 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--------------------------PRSAEAWYNLGNAYYK----QGDY 51 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHH----HTCH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC--------------------------CcchhHHHHHHHHHHH----hcCH
Confidence 456677777777777777777777665421 2344555666666666 6889
Q ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHH
Q 019734 218 QEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLE 293 (336)
Q Consensus 218 ~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~ 293 (336)
++|+.+|++++. +.+..+++.+|.++... +++++|+.++++++.. .+...++.+|.++...|++++|..+|+
T Consensus 52 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 52 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQ----GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHHh----cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 999999999865 46788899999999653 3999999999999875 457888999999999999999999999
Q ss_pred HHHHcCc
Q 019734 294 LATRAGE 300 (336)
Q Consensus 294 ~A~~~~~ 300 (336)
+++...+
T Consensus 128 ~~~~~~~ 134 (136)
T 2fo7_A 128 KALELDP 134 (136)
T ss_dssp HHHHHST
T ss_pred HHHccCC
Confidence 9987643
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-10 Score=88.67 Aligned_cols=109 Identities=15% Similarity=0.181 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
.+.++..||.++.. .+++++|+.+|++|++. .++.+++++|.+|...|++++|+..|+++++. .+...+..+
T Consensus 7 ~A~a~~~lG~~~~~----~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 82 (127)
T 4gcn_A 7 AAIAEKDLGNAAYK----QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence 45677788888888 58888888888888876 47888888888888888888888888888754 222222222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC-CCHHHHH
Q 019734 176 GISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVRAMY 237 (336)
Q Consensus 176 g~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~ 237 (336)
..+++++|.+|.. .+++++|+.+|++++.. .+++...
T Consensus 83 ---------------------a~~~~~lg~~~~~----~~~~~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 83 ---------------------AKAMSRAGNAFQK----QNDLSLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp ---------------------HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred ---------------------HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcCHHHHH
Confidence 2345567777776 67777787777777653 3444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-10 Score=94.45 Aligned_cols=85 Identities=16% Similarity=0.130 Sum_probs=62.4
Q ss_pred CCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHH
Q 019734 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----STLAMVDAGLMY 147 (336)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~----~~~a~~~lg~~~ 147 (336)
+..|++.+|...+..+. ..+ ...+.+++.+|.++.. .+++++|+.+|++++.. + ...+++.+|.++
T Consensus 3 ~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 76 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL-AHP-ATASGARFMLGYVYAF----MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVE 76 (203)
T ss_dssp ----CHHHHHHHHHHHH-TST-TTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhc-CCh-HHHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56788888876433332 222 2468889999999988 58999999999998873 2 356788999999
Q ss_pred hcCCCHHHHHHHHHHHHHc
Q 019734 148 WEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~ 166 (336)
...|++++|+.+|+++++.
T Consensus 77 ~~~g~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 77 RMAGNWDAARRCFLEEREL 95 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988754
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-11 Score=110.15 Aligned_cols=158 Identities=14% Similarity=0.120 Sum_probs=115.0
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 019734 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQEEAVKLLYQASIA 194 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~A~~~~~ka~~~ 194 (336)
.++++|+.+|++++.. .++.+++.+|.+++..|++++|+.+|+++++. .+...- .+.+. .+..
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~--------~~~~~-----~~~~ 193 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS--------NEEAQ-----KAQA 193 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC--------SHHHH-----HHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCC--------hHHHH-----HHHH
Confidence 5677888888887754 46889999999999999999999999999865 221000 00000 0111
Q ss_pred CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHH
Q 019734 195 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGK 270 (336)
Q Consensus 195 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~ 270 (336)
....+++++|.+|.. .+++++|+.+|+++++ +.++.+++++|.+|.... ++++|+.+|++++.. ++..
T Consensus 194 ~~~~~~~nla~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g----~~~~A~~~~~~al~l~P~~~~ 265 (336)
T 1p5q_A 194 LRLASHLNLAMCHLK----LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN----DFELARADFQKVLQLYPNNKA 265 (336)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHCCCCHH
Confidence 124667778888777 7888888888888865 467888888888886533 888888888888874 5677
Q ss_pred HHHHHHHHhhccCCHHHH-HHHHHHHHH
Q 019734 271 AQLEHGLGLFTEGEMMKA-VVYLELATR 297 (336)
Q Consensus 271 a~~~lg~~~~~~~~~~~A-~~~~~~A~~ 297 (336)
++.+||.++...|++++| ...|++.+.
T Consensus 266 a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 266 AKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888 456666654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.21 E-value=7.1e-10 Score=87.99 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
.+..++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++...|++++|+.+|.++++. .++.+++.+
T Consensus 12 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 87 (166)
T 1a17_A 12 RAEELKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 35667777877777 57888888888887775 46777888888888888888888888777654 455666666
Q ss_pred HHHHHH----HHHHHHHHHHHH
Q 019734 176 GISYLQ----EEAVKLLYQASI 193 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~ 193 (336)
|.++.. ++|+.+|+++++
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVK 109 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 666554 555555555544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-10 Score=87.46 Aligned_cols=96 Identities=16% Similarity=0.169 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC-----
Q 019734 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH----- 268 (336)
Q Consensus 196 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~----- 268 (336)
.+.++.+||..+.. .+++++|+.+|++|++ +.++.+++++|.+|... +++++|+.+|+++++..+
T Consensus 7 ~A~a~~~lG~~~~~----~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~----~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 7 AAIAEKDLGNAAYK----QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE----KKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh----hhHHHHHHHHHHHHHhCcccchh
Confidence 35678899999998 8999999999999965 57899999999999763 399999999999987421
Q ss_pred ----HHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 269 ----GKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 269 ----~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
..+++++|.++...|++++|+.+|++++...
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3578999999999999999999999999753
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-10 Score=89.87 Aligned_cols=105 Identities=14% Similarity=0.006 Sum_probs=91.2
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHH
Q 019734 187 LLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKR 262 (336)
Q Consensus 187 ~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~ 262 (336)
.|+++++. ++..+++++|.++.. .+++++|+..|++++. +.++.+++++|.+|... +++++|+.+|++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~ 80 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQ----SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAM----GQYDLAIHSYSY 80 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHH----hhHHHHHHHHHH
Confidence 46666655 367788999999988 8999999999999964 57899999999999753 399999999999
Q ss_pred HHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 263 AADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 263 a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
++.. +++.+++++|.+|...|++++|..+|+++++..
T Consensus 81 al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 81 GAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9875 678999999999999999999999999999863
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=102.19 Aligned_cols=181 Identities=15% Similarity=0.096 Sum_probs=113.5
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
++.+++.+|.++.. .+++++|+.+|++++.. .++.+++++|.+|...|++++|+..|+++++. +++.+++++
T Consensus 3 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 56778888888887 57888888888888876 47888888888888888888888888888764 677788888
Q ss_pred HHHHHH----HHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCC
Q 019734 176 GISYLQ----EEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA--EGGYVRAMYNTSLCYSFGE 247 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~ 247 (336)
|.+|.. ++|+.+|+++++.+ ++..+..+..... ...++..|..... ...+......++.++.
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~--- 148 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-------RIAKKKRWNSIEERRIHQESELHSYLTRLIA--- 148 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH-------HHHHHHHHHHHHHTCCCCCCHHHHHHHHHHH---
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---
Confidence 888777 77777777776532 1100000000000 1122223332222 2244555555666553
Q ss_pred CCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhcc-CCHHHHHHHHHHHHH
Q 019734 248 GLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTE-GEMMKAVVYLELATR 297 (336)
Q Consensus 248 g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~-~~~~~A~~~~~~A~~ 297 (336)
+++++|+..|+++++.++ ......++.++... +.+++|...|.++.+
T Consensus 149 ---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 149 ---AERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp ---HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred ---HHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 277777777777776543 23334444444443 566777777776654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.8e-11 Score=93.06 Aligned_cols=77 Identities=17% Similarity=0.113 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
++.+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++...|++++|+.+|++++.. +++.+++++
T Consensus 20 ~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQ----SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred hHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 44555556665555 35666666666665554 35556666666666666666666665555532 344444444
Q ss_pred HHHHH
Q 019734 176 GISYL 180 (336)
Q Consensus 176 g~~~~ 180 (336)
|.+|.
T Consensus 96 g~~~~ 100 (148)
T 2vgx_A 96 AECLL 100 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-10 Score=101.42 Aligned_cols=182 Identities=13% Similarity=0.021 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCL 207 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~ 207 (336)
++.+++.+|..+...|++++|+.+|.++++. .++.+++++|.+|.. ++|+.+|+++++. +++.+++++|.+|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5678999999999999999999999999865 789999999999998 9999999999875 6899999999999
Q ss_pred hcCCCCccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHhhccC
Q 019734 208 HRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD--CGHGKAQLEHGLGLFTEG 283 (336)
Q Consensus 208 ~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~ 283 (336)
.. .+++++|+.+|+++++.. +...+..+..... ...++..|...... ..++.....++.++ .|
T Consensus 83 ~~----~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~ 149 (281)
T 2c2l_A 83 LE----MESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-------RIAKKKRWNSIEERRIHQESELHSYLTRLI--AA 149 (281)
T ss_dssp HH----TTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH-------HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HH
T ss_pred HH----cCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HH
Confidence 98 899999999999997542 2111111111111 23344455554443 24566666777654 79
Q ss_pred CHHHHHHHHHHHHHcCcHHHHHHHH--HHHhhcChhcHHHHHHHHHHhhc
Q 019734 284 EMMKAVVYLELATRAGETAADHVKN--VILQQLSATSRDRAMLVVDSWRA 331 (336)
Q Consensus 284 ~~~~A~~~~~~A~~~~~~~a~~~~~--~~~~~~~~~~~~~a~~~~~~~~~ 331 (336)
++++|+..|++|++..+.+...... .+... .....+++.+++.+..+
T Consensus 150 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 150 ERERELEECQRNHEGHEDDGHIRAQQACIEAK-HDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHH-HHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhhhccccchhhhhhHHHHHHHH-HHHHHHHHHHHHHhhhc
Confidence 9999999999999886544332222 22111 22345567777766554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-09 Score=88.94 Aligned_cols=149 Identities=17% Similarity=0.036 Sum_probs=107.5
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHHHHHH
Q 019734 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPAGQFNLGISYLQEEAVKLLYQA 191 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~~~~A~~~~~ka 191 (336)
.+++++|...++..... ....++..+|.++...|++++|+.+|+++++. ++..
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------- 63 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT--------------------- 63 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHH---------------------
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcH---------------------
Confidence 46889999855544332 35678889999999999999999999888752 1211
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC----C-C----HHHHHHHHHHHHcCCCCcccHHHHHHHHHH
Q 019734 192 SIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G-Y----VRAMYNTSLCYSFGEGLPLSHRQARKWMKR 262 (336)
Q Consensus 192 ~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~----~-~----~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~ 262 (336)
....++.++|.+|.. .+++++|+.+|+++++. + + ..+++++|.++.. .+++++|..++++
T Consensus 64 ---~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 64 ---AEHRALHQVGMVERM----AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH----FGDLAGARQEYEK 132 (203)
T ss_dssp ---HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHH
Confidence 123456667777776 67888888888887653 2 2 4567788888865 2388889888888
Q ss_pred HHHc----CCH----HHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 263 AADC----GHG----KAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 263 a~~~----~~~----~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
++.. +++ .++.++|.++...|++++|..+++++++.
T Consensus 133 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8752 333 34589999999999999999999999863
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-08 Score=90.13 Aligned_cols=233 Identities=9% Similarity=-0.109 Sum_probs=180.6
Q ss_pred CChhHH-hhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC-CC-----cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 77 TLPQLR-AASLVCKSWNDALRPLREAMVLLRWGKRFKHGR-GV-----RKNLDKALDSFLKGAAR--GSTLAMVDAGLMY 147 (336)
Q Consensus 77 ~~~~~~-~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~-g~-----~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~ 147 (336)
..|.+. +|..++...+...|+ +..+|+..+.+..... .. ...+++++.++..++.. .+..+|+..+.++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~--~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 445554 788888888888777 8899999998887620 00 01168999999999986 4899999999999
Q ss_pred hcCC--CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH-----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC----
Q 019734 148 WEMD--KKEAAISLYRQAAVL--GDPAGQFNLGISYLQ-----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRG---- 212 (336)
Q Consensus 148 ~~~~--~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~-----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g---- 212 (336)
...+ ++++++.++.++++. .+..|+.+.+.++.. ++++.++.++++. .+..|+++.+.++..-..
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC--
T ss_pred hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccc
Confidence 9888 589999999999865 789999999999877 7999999999876 589999999988764210
Q ss_pred ------CccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCc-------ccHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 213 ------VDFNLQEAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLP-------LSHRQARKWMKRAADC--GHGKAQLEH 275 (336)
Q Consensus 213 ------~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~-------~~~~~A~~~~~~a~~~--~~~~a~~~l 275 (336)
..+.+++++.++.+++ ++++..+++.+..++....|.. .-++++++++++.++. ++...+..+
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~ 278 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 278 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHH
Confidence 1156889999999996 5689999998888887775532 3578999999999885 444444333
Q ss_pred HHHh---hccCCHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 019734 276 GLGL---FTEGEMMKAVVYLELATRAGETAADHVKNVIL 311 (336)
Q Consensus 276 g~~~---~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~ 311 (336)
..+. ...+..++...|+.+.++.++...-.+.....
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 279 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 3322 23678999999999999999887777665433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-09 Score=95.39 Aligned_cols=185 Identities=11% Similarity=0.091 Sum_probs=146.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH-------HHHHHH----HHHHHHHHHHHHc-----------
Q 019734 139 AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL-------GISYLQ----EEAVKLLYQASIA----------- 194 (336)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L-------g~~~~~----~~A~~~~~ka~~~----------- 194 (336)
.++..|.-+ ..+|++.|+..|.++++. +.+++|..+ +.++.. .+++..++++++.
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 345555555 589999999999999754 889999999 788877 8888889988772
Q ss_pred -C-C----------HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHH
Q 019734 195 -G-H----------VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWM 260 (336)
Q Consensus 195 -~-~----------~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~ 260 (336)
| + .+....++.++.. .+++++|.+.|...... ++. +.+.+|.++... +++++|+..|
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~----~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~----~r~~dA~~~l 158 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAA----QGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAA----ERWTDVIDQV 158 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHH----HTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHT----TCHHHHHHHH
T ss_pred CCcccccccccCCHhHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHc----CCHHHHHHHH
Confidence 2 1 3556678888887 78999999999988644 345 899999999764 4999999999
Q ss_pred HHHHHcCC----HHHHHHHHHHhhccCCHHHHHHHHHHHHHcC-----cHHHHHHHHHHHhhcChhcHHHHHHHHHHhhc
Q 019734 261 KRAADCGH----GKAQLEHGLGLFTEGEMMKAVVYLELATRAG-----ETAADHVKNVILQQLSATSRDRAMLVVDSWRA 331 (336)
Q Consensus 261 ~~a~~~~~----~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~-----~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 331 (336)
+++....+ ..++++||.++...|++++|+.+|++++... ..++..+++.++.. .++.++|...++++..
T Consensus 159 ~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~--lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 159 KSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS--QGNESAAVALLEWLQT 236 (282)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHH
T ss_pred HHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHh
Confidence 98876543 3478999999999999999999999999654 23566666666554 5677889999999887
Q ss_pred CCCC
Q 019734 332 MPSL 335 (336)
Q Consensus 332 ~~~~ 335 (336)
..|.
T Consensus 237 ~~P~ 240 (282)
T 4f3v_A 237 THPE 240 (282)
T ss_dssp HSCC
T ss_pred cCCc
Confidence 7763
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-09 Score=83.22 Aligned_cols=95 Identities=13% Similarity=0.014 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHH
Q 019734 197 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQ 272 (336)
Q Consensus 197 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~ 272 (336)
+.+++.+|..+.. .+++++|+.+|+++++ +.++.+++++|.+|.... ++++|+.+|++++.. .++.++
T Consensus 4 a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFT----KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM----SFPEAIADCNKAIEKDPNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc----CHHHHHHHHHHHHHhCCCcHHHH
Confidence 5678899999988 8999999999999975 478999999999997633 999999999999985 568899
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 273 LEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 273 ~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
+++|.++...|++++|+.+|+++++..
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999865
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-09 Score=82.39 Aligned_cols=87 Identities=13% Similarity=0.042 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG 176 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 176 (336)
+..++.+|..+.. .+++++|+.+|++++.. .++.+++++|.+|...|++++|+..|+++++. +++.+++.+|
T Consensus 4 a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFT----KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4566667777666 46777777777777665 35677777777777777777777777776643 4455555555
Q ss_pred HHHHH----HHHHHHHHHH
Q 019734 177 ISYLQ----EEAVKLLYQA 191 (336)
Q Consensus 177 ~~~~~----~~A~~~~~ka 191 (336)
.++.. ++|+.+|+++
T Consensus 80 ~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHH
Confidence 55544 4444444444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.13 E-value=8.3e-10 Score=88.26 Aligned_cols=89 Identities=18% Similarity=0.167 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
++.+++.+|.++.. .+++++|+.+|++++.. .++.+++++|.+|...|++++|+.+|+++++. +++.+++++
T Consensus 10 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMA----RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45666777777766 46777777777777765 46677777777777777777777777776643 445555555
Q ss_pred HHHHHH----HHHHHHHHHHH
Q 019734 176 GISYLQ----EEAVKLLYQAS 192 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~ 192 (336)
|.+|.. ++|+.+|++++
T Consensus 86 g~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHH
Confidence 555544 44444444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.2e-10 Score=87.88 Aligned_cols=105 Identities=11% Similarity=-0.043 Sum_probs=88.9
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHH
Q 019734 187 LLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKR 262 (336)
Q Consensus 187 ~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~ 262 (336)
.|+++++. ++..+++.+|.++.. .+++++|+.+|++++. +.++.+++.+|.+|... +++++|+.+|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~ 77 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQ----AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL----GLYEQALQSYSY 77 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH----hhHHHHHHHHHH
Confidence 45555544 356788999999988 8999999999999965 57899999999999763 399999999999
Q ss_pred HHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 263 AADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 263 a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
++.. +++.+++++|.+|...|++++|+.+|+++++..
T Consensus 78 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 78 GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9985 678899999999999999999999999999864
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=8.2e-10 Score=84.08 Aligned_cols=108 Identities=12% Similarity=-0.013 Sum_probs=61.2
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
.....+...+..|++++|...+.+.++..+. ++.+++.+|.+|.. .+++++|+.+|++++.. .++.+++.+|
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPK--DAKLYSNRAACYTK----LLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT--CHHHHHHHHHHHTT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3445555555566666666555555554443 45666666666655 35666666666666554 3455666666
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYL 180 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~ 180 (336)
.++...|++++|+.+|+++++. ++..++..++.++.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 6666666666666666665543 34455555555543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-09 Score=88.68 Aligned_cols=113 Identities=9% Similarity=0.066 Sum_probs=83.4
Q ss_pred cCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH-HhcCC
Q 019734 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM-YWEMD 151 (336)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~-~~~~~ 151 (336)
.+..|++++|+..+...++..+. ++.+++.+|.+|.. .+++++|+.+|++++.. .++.+++.+|.+ +...|
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQ--NSEQWALLGEYYLW----QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS 93 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCS--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred hhhccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 35678888998888888888766 78899999999988 58999999999998876 578889999998 77888
Q ss_pred CH--HHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 019734 152 KK--EAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASI 193 (336)
Q Consensus 152 ~~--~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~ 193 (336)
++ ++|+.+|+++++. +++.+++.+|.+|.. ++|+.+|+++++
T Consensus 94 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 88 9898888888754 456666666666654 445555554444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.8e-09 Score=90.86 Aligned_cols=210 Identities=6% Similarity=-0.158 Sum_probs=172.3
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc--CCHHHHHHHHHHH----HH-------H
Q 019734 120 NLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD--KKEAAISLYRQAAVL--GDPAGQFNLGISY----LQ-------E 182 (336)
Q Consensus 120 ~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~--~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~----~~-------~ 182 (336)
..++|+..+++++.. .+..+++..|.++...+ ++++++.++.+++.. .+..+++..+.++ .. +
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 446899999999987 58999999999999999 999999999999854 7899999999999 32 7
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHH--HHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC--CcccHH
Q 019734 183 EAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQ--EAARWYLRAAEG--GYVRAMYNTSLCYSFGEG--LPLSHR 254 (336)
Q Consensus 183 ~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~--~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g--~~~~~~ 254 (336)
+++.++.++++. .+..++++.+.++.. .+.++ +++.++.++++. .+..|+.+.+.++..... ....++
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~----l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDT----FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 999999999876 589999999999987 55666 999999999764 689999999999865321 011289
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHH-HHHHHHHHHHcC-----cHHHHHHHHHHHhhcChhcHHHHHHHH
Q 019734 255 QARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMK-AVVYLELATRAG-----ETAADHVKNVILQQLSATSRDRAMLVV 326 (336)
Q Consensus 255 ~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~-A~~~~~~A~~~~-----~~~a~~~~~~~~~~~~~~~~~~a~~~~ 326 (336)
++++++++++.. ++..+++.++.++...|+..+ ...+.++.+..+ ++.+...+..++.. .++.++|.+++
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~--~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ--QKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc--cCCHHHHHHHH
Confidence 999999999874 789999999999988887555 555777766543 77888888887764 46788999999
Q ss_pred HHhhc-CCCC
Q 019734 327 DSWRA-MPSL 335 (336)
Q Consensus 327 ~~~~~-~~~~ 335 (336)
+.+.+ ..|.
T Consensus 282 ~~l~~~~Dpi 291 (306)
T 3dra_A 282 DLLKSKYNPI 291 (306)
T ss_dssp HHHHHTTCGG
T ss_pred HHHHhccChH
Confidence 99885 4553
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.7e-10 Score=88.81 Aligned_cols=110 Identities=11% Similarity=0.062 Sum_probs=97.2
Q ss_pred hHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHH
Q 019734 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVD 142 (336)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~ 142 (336)
.......+..++..|++++|+..+.+.++..+. ++.+++.+|.+|.. .+++++|+.+|++++.. .++.+++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA--NPIYLSNRAAAYSA----SGQHEKAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 345677888888999999999999999999877 89999999999999 68999999999999987 58999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 019734 143 AGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYL 180 (336)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~ 180 (336)
+|.+|...|++++|+.+|+++++. +++.+++.++....
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 999999999999999999999854 67777777666554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-09 Score=82.97 Aligned_cols=106 Identities=11% Similarity=0.087 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHH
Q 019734 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFN 174 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 174 (336)
.++.+++.+|.++.. .+++++|+.+|++++.. .+..+++.+|.++...|++++|+.+|+++++. .++.+++.
T Consensus 14 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 14 DLALMVKNKGNECFQ----KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp CHHHHHHHHHHHHHH----TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 367888999999988 58999999999999887 47889999999999999999999999998864 56677777
Q ss_pred HHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019734 175 LGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLH 208 (336)
Q Consensus 175 Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~ 208 (336)
+|.++.. ++|+.+|+++++. .+..++..++.++.
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 7776665 5666666665543 24455555555554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=4.2e-10 Score=92.93 Aligned_cols=106 Identities=16% Similarity=0.282 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCH----------------HHHHHHHHHHhcCCCHHHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GST----------------LAMVDAGLMYWEMDKKEAAISLYR 161 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~----------------~a~~~lg~~~~~~~~~~~A~~~~~ 161 (336)
.+..+..+|.++.. .+++++|+.+|++++.. .++ .+++++|.+|...|++++|+.+|.
T Consensus 37 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 37 SAFDIKEEGNEFFK----KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 45667778888887 57888888888888875 233 788888888888888888888888
Q ss_pred HHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019734 162 QAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHR 209 (336)
Q Consensus 162 ~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~ 209 (336)
++++. .++.+++.+|.+|.. ++|+.+|+++++. ++..++..++.++..
T Consensus 113 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 88754 567777777777776 7777777777654 466777777777654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.2e-09 Score=97.24 Aligned_cols=197 Identities=12% Similarity=0.006 Sum_probs=117.7
Q ss_pred hHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCC---------------HHHHHHHHHHHhcCCCCcCCHHHHHHHHH
Q 019734 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLRE---------------AMVLLRWGKRFKHGRGVRKNLDKALDSFL 129 (336)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~a~~~lg~~~~~g~g~~~~~~~A~~~~~ 129 (336)
|...+.++...+..|++.+|...+...++..+..++ ..++..||.+|.. .+++++|+.+|.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~----~~~~~~a~~~~~ 79 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVT----MGAKDKLREFIP 79 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHH----CCCHHHHHHHHH
Confidence 446678888888889999999988888887665432 1356677777776 567777777777
Q ss_pred HHHHc----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 019734 130 KGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPAGQFNLGISYLQEEAVKLLYQASIAGHV 197 (336)
Q Consensus 130 ~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~ 197 (336)
++... +. ......+|.++...|++++|+.++++++.. ++. ....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------------~~~~ 135 (434)
T 4b4t_Q 80 HSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV------------------------FLKH 135 (434)
T ss_dssp HTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC------------------------SSHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc------------------------HHHH
Confidence 76653 11 123445666666667777777777666532 100 0113
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc---
Q 019734 198 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--------GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--- 266 (336)
Q Consensus 198 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--- 266 (336)
..+.+||.+|.. .+++.+|..+++.+... ....++..+|.+|.. .+++++|..+|+++...
T Consensus 136 ~~~~~la~~~~~----~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 136 SLSIKLATLHYQ----KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK----LRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHhhc
Confidence 445555555555 55666666666555321 124455666666654 22666666666666542
Q ss_pred -C-C----HHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 267 -G-H----GKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 267 -~-~----~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
. + ...+..+|.++...+++++|..+|..+++
T Consensus 208 ~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 208 IYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 1 12335566666666666666666666654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.4e-09 Score=83.94 Aligned_cols=118 Identities=16% Similarity=0.063 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHH
Q 019734 170 AGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSL 241 (336)
Q Consensus 170 ~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~ 241 (336)
..++.+|.++.. ++|+.+|+++++. .++.+++++|.++.. .+++++|+.+|++++. +.++.+++.+|.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR----TECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344444444444 4455555554432 244444555555444 4445555555554433 234444445554
Q ss_pred HHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHH--HHHhhccCCHHHHHHHHHHH
Q 019734 242 CYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEH--GLGLFTEGEMMKAVVYLELA 295 (336)
Q Consensus 242 ~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l--g~~~~~~~~~~~A~~~~~~A 295 (336)
++.... ++++|+.+|++++.. .+..++..+ +..+...|++++|+.+++++
T Consensus 90 ~~~~~~----~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 90 SNMALG----KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHTT----CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc----cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 443311 455555555554442 223333222 22244444444444444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-09 Score=87.53 Aligned_cols=108 Identities=17% Similarity=0.157 Sum_probs=71.4
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHH-HHH------HHHHH
Q 019734 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGIS-YLQ------EEAVK 186 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~-~~~------~~A~~ 186 (336)
.+++++|+.+|++++.. .++.+++.+|.+|...|++++|+.+|+++++. +++.+++.+|.+ +.. ++|+.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 57889999999999876 48899999999999999999999999998753 566677776666 433 44555
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 019734 187 LLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 229 (336)
Q Consensus 187 ~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~ 229 (336)
+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++
T Consensus 103 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 103 MIDKALALDSNEITALMLLASDAFM----QANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHH----cccHHHHHHHHHHHHh
Confidence 55555443 344555555555554 4455555555555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.7e-09 Score=82.22 Aligned_cols=130 Identities=18% Similarity=0.176 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----C
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----G 167 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~ 167 (336)
.+.+++.+|.+|.. .+++++|+.+|++++.. ++ ..++..+|.++...|++++|+.+|+++++. +
T Consensus 8 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 8 QGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 35678888998888 58999999999998875 22 247888999999999999999999888753 2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC----C----CHHHHHHH
Q 019734 168 DPAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G----YVRAMYNT 239 (336)
Q Consensus 168 ~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~l 239 (336)
++.. ...+++++|.++.. .+++++|+.+++++++. + ...++..+
T Consensus 84 ~~~~------------------------~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 135 (164)
T 3ro3_A 84 DRAV------------------------EAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL 135 (164)
T ss_dssp CHHH------------------------HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHH------------------------HHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHH
Confidence 2110 12334455555554 45566666666555432 1 13455666
Q ss_pred HHHHHcCCCCcccHHHHHHHHHHHHH
Q 019734 240 SLCYSFGEGLPLSHRQARKWMKRAAD 265 (336)
Q Consensus 240 g~~~~~~~g~~~~~~~A~~~~~~a~~ 265 (336)
|.+|.. .+++++|..+++++++
T Consensus 136 a~~~~~----~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 136 GNAYTA----LGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHH----HTCHHHHHHHHHHHHH
T ss_pred HHHHHH----ccCHHHHHHHHHHHHH
Confidence 666643 2266666666666654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=6e-09 Score=78.62 Aligned_cols=105 Identities=15% Similarity=0.124 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
++.+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++...|++++|+.+|.++++. .++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 11 EAERLKTEGNEQMK----VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 45667777777776 46777777777777765 46777777777777777777777777777643 445555555
Q ss_pred HHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019734 176 GISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLH 208 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~ 208 (336)
|.++.. ++|+.+|+++++. +++.++..+|.++.
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 555554 4444444444432 23444444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.04 E-value=5.4e-10 Score=104.94 Aligned_cols=106 Identities=16% Similarity=0.198 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC---------------HHHHHHHHHHHhcCCCHHHHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GS---------------TLAMVDAGLMYWEMDKKEAAISLYRQ 162 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~---------------~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (336)
.+.+++.+|.+|.. .+++++|+.+|++|+.. .+ ..+++++|.+|...+++++|+.+|.+
T Consensus 267 ~a~~~~~~G~~~~~----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 267 QAAIVKEKGTVYFK----GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 45666677777766 46777777777777664 23 46666666666666666666666666
Q ss_pred HHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019734 163 AAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHR 209 (336)
Q Consensus 163 a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~ 209 (336)
+++. +++.+++++|.+|.. ++|+.+|+++++. ++..++.+++.++..
T Consensus 343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK 397 (457)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 6543 455555555555554 4455555555443 234444444444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-08 Score=75.79 Aligned_cols=76 Identities=13% Similarity=0.031 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG 176 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 176 (336)
+.+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++...|++++|+.+++++++. .++.+++.+|
T Consensus 4 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALS----VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4555666666665 45666666666666654 35666666666666666666666666665543 3344444444
Q ss_pred HHHH
Q 019734 177 ISYL 180 (336)
Q Consensus 177 ~~~~ 180 (336)
.++.
T Consensus 80 ~~~~ 83 (118)
T 1elw_A 80 AALE 83 (118)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-08 Score=80.08 Aligned_cols=130 Identities=15% Similarity=0.106 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 019734 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRG 212 (336)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g 212 (336)
..++..+|.++...|++++|+.+|+++++. ++... ...++.++|.+|..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------------------~~~~~~~l~~~~~~--- 61 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA------------------------ERIAYSNLGNAYIF--- 61 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------------------------HHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH------------------------HHHHHHHHHHHHHH---
Confidence 456788999999999999999999988753 12110 13466778888877
Q ss_pred CccCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC----HHHHHHHH
Q 019734 213 VDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHG 276 (336)
Q Consensus 213 ~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg 276 (336)
.+++++|+.+|+++++. ++ ..++.++|.++... +++++|+.++++++.. ++ ..++.++|
T Consensus 62 -~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 136 (164)
T 3ro3_A 62 -LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL----QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLG 136 (164)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHH
Confidence 78899999999988653 22 56788999999763 3999999999999863 22 45678999
Q ss_pred HHhhccCCHHHHHHHHHHHHHc
Q 019734 277 LGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 277 ~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
.++...|++++|..+++++++.
T Consensus 137 ~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 137 NAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999864
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=4e-10 Score=93.08 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=89.8
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019734 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQEEAVKLLYQASI 193 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~A~~~~~ka~~ 193 (336)
.+++++|.+.++..... .....+..+|..++..|++++|+.+|.++++. .++.. ..+. ... ..+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~-~~~------~~~~~- 86 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW--DDQI-LLD------KKKNI- 86 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC--CCHH-HHH------HHHHH-
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc--chhh-HHH------HHHHH-
Confidence 57788887777755433 45678889999999999999999999999864 22200 0000 000 00000
Q ss_pred cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCH
Q 019734 194 AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHG 269 (336)
Q Consensus 194 ~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~ 269 (336)
...+++++|.+|.. .+++++|+.+|++++. +.+..+++.+|.+|.. .+++++|+.+|++++.. ++.
T Consensus 87 --~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~ 156 (198)
T 2fbn_A 87 --EISCNLNLATCYNK----NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASLNPNNL 156 (198)
T ss_dssp --HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCH
T ss_pred --HHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcH
Confidence 13455666666665 5677777777777654 3566677777777654 22677777777777654 456
Q ss_pred HHHHHHHHHhhccCCHHHHH
Q 019734 270 KAQLEHGLGLFTEGEMMKAV 289 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~ 289 (336)
.++..++.++...++..++.
T Consensus 157 ~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 157 DIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66667776666665555554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3.4e-09 Score=82.60 Aligned_cols=90 Identities=19% Similarity=0.139 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
+..+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.+|...|++++|+.+|++++.. +++.+++++
T Consensus 17 ~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 17 TLEQLYALGFNQYQ----AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHH----HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 34455555555555 35555555555555544 35555555555555555555555555555433 455555555
Q ss_pred HHHHHH----HHHHHHHHHHHH
Q 019734 176 GISYLQ----EEAVKLLYQASI 193 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~ 193 (336)
|.+|.. ++|+.+|+++++
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 555555 555555555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=9.7e-08 Score=85.59 Aligned_cols=222 Identities=10% Similarity=-0.104 Sum_probs=169.6
Q ss_pred hhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC-C-CHH
Q 019734 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEM-D-KKE 154 (336)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~-~-~~~ 154 (336)
...++|..++...+...|+ +..+++..+.++... ..++++++.++++++.. .+..+++..+.++... + +++
T Consensus 68 e~se~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~l---~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA--HYTVWQYRFSLLTSL---NKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred CCCHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence 4446899999999999888 899999999999873 23699999999999987 5899999999999887 7 899
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHH----H--------HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC---Ccc
Q 019734 155 AAISLYRQAAVL--GDPAGQFNLGISYLQ----E--------EAVKLLYQASIA--GHVRAQYQLALCLHRGRG---VDF 215 (336)
Q Consensus 155 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~--------~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g---~~~ 215 (336)
+++.++.++++. .+..++...+.++.. + ++++++.++++. .+..|+++.+.++..-.+ ...
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 999999999865 789999999999876 4 999999999886 588999999999876211 112
Q ss_pred CHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcc----------------cHHHHHHHHHHHHH--------cCCH
Q 019734 216 NLQEAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPL----------------SHRQARKWMKRAAD--------CGHG 269 (336)
Q Consensus 216 ~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~----------------~~~~A~~~~~~a~~--------~~~~ 269 (336)
.+++++.++++++ .+++..+++++..++........ ...+-..+....+. ...+
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 2789999999996 46899999998888865421000 11222222222211 1346
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHc-CcHHHHH
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVYLELATRA-GETAADH 305 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~~~~A~~~-~~~~a~~ 305 (336)
.+...|+.+|.+.|+.++|...|+...+. ++....+
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~y 339 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGY 339 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHH
Confidence 67789999999999999999999998754 4444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=4.2e-09 Score=79.95 Aligned_cols=73 Identities=25% Similarity=0.160 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 019734 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYL 180 (336)
Q Consensus 105 ~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~ 180 (336)
+.+|.++.. .+++++|+..|++++.. +++.+++.+|.++...|++++|+..|+++++. +++.+++.||.+|.
T Consensus 21 ~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 21 MEEGLSMLK----LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 444444444 34555555555555443 34555555555555555555555555554432 34444444444443
Q ss_pred H
Q 019734 181 Q 181 (336)
Q Consensus 181 ~ 181 (336)
.
T Consensus 97 ~ 97 (121)
T 1hxi_A 97 N 97 (121)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.8e-08 Score=75.27 Aligned_cols=103 Identities=21% Similarity=0.349 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG 176 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 176 (336)
+.+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++...|++++|+.+|+++++. .++.+++.+|
T Consensus 9 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 5677778887777 47888888888887765 46777788888888888888888887777653 4455555555
Q ss_pred HHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 177 ISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCL 207 (336)
Q Consensus 177 ~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~ 207 (336)
.++.. ++|+.+|+++++. .++.++..+|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 55544 4444444444332 2344444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.8e-09 Score=80.97 Aligned_cols=95 Identities=15% Similarity=-0.017 Sum_probs=80.2
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHH
Q 019734 199 AQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLE 274 (336)
Q Consensus 199 a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~ 274 (336)
.++.+|..+.. .+++++|+..|++++. +.++.+++.+|.++.... ++++|+..|++++.. +++.++++
T Consensus 19 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g----~~~~A~~~~~~al~l~P~~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLK----LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE----KDGLAIIALNHARMLDPKDIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 46788888887 7899999999999965 578999999999997633 999999999999885 56889999
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHcCcH
Q 019734 275 HGLGLFTEGEMMKAVVYLELATRAGET 301 (336)
Q Consensus 275 lg~~~~~~~~~~~A~~~~~~A~~~~~~ 301 (336)
||.+|...|++++|+.+|+++++..+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999986554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.99 E-value=5.3e-10 Score=104.95 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 019734 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQEEAVKLLYQASIA 194 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~A~~~~~ka~~~ 194 (336)
+++++|+.+|+++... ..+.+++.+|.+++..|++++|+.+|++|++. .+.... .+ .......
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~--------~~-----~~~~~~~ 314 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS--------EK-----ESKASES 314 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC--------HH-----HHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC--------hH-----HHHHHHH
Confidence 4566778778777654 46788999999999999999999999999864 221000 00 0001112
Q ss_pred CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHH
Q 019734 195 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGK 270 (336)
Q Consensus 195 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~ 270 (336)
....+++++|.||.. .+++++|+.+|+++++ +.+..+++++|.+|.... ++++|+.+|+++++. ++..
T Consensus 315 ~~~~~~~nla~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g----~~~~A~~~~~~al~l~P~~~~ 386 (457)
T 1kt0_A 315 FLLAAFLNLAMCYLK----LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMN----EFESAKGDFEKVLEVNPQNKA 386 (457)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTC----C
T ss_pred HHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhCCCCHH
Confidence 235677788888877 7888888888888865 467888888888886533 888888888888875 4567
Q ss_pred HHHHHHHHhhccCCHHHHHH
Q 019734 271 AQLEHGLGLFTEGEMMKAVV 290 (336)
Q Consensus 271 a~~~lg~~~~~~~~~~~A~~ 290 (336)
++.+++.++...++++++..
T Consensus 387 a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 387 ARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77888888888887777664
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-08 Score=76.48 Aligned_cols=109 Identities=16% Similarity=0.148 Sum_probs=96.9
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
.....+...+..+++++|+..+.+.++..+. ++.+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA--NAVYFCNRAAAYSK----LGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHH----hhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 4466677778899999999999999988766 78999999999998 58999999999999986 5789999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ 181 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 181 (336)
.++...|++++|+.+|+++++. +++.++..+|.++..
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 9999999999999999999865 688999999988863
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.5e-08 Score=76.37 Aligned_cols=103 Identities=13% Similarity=0.058 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S---TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQ 172 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~ 172 (336)
++..++.+|.++.. .+++++|+.+|++++... + ..+++.+|.+|...|++++|+.+|+++++. .++.++
T Consensus 27 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFK----CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHT----TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 45666666666666 466777777777766652 2 566666677776667777776666666543 345555
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019734 173 FNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALC 206 (336)
Q Consensus 173 ~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~ 206 (336)
+.+|.++.. ++|+.+|+++++. ++..++..++.+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 555555544 4444444444432 234444444444
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.97 E-value=9.5e-09 Score=78.89 Aligned_cols=100 Identities=21% Similarity=0.082 Sum_probs=88.0
Q ss_pred cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCH
Q 019734 194 AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHG 269 (336)
Q Consensus 194 ~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~ 269 (336)
...+.+++.+|.++.. .+++++|+.+|++++. +.++.+++++|.+|... +++++|+.+|++++.. +++
T Consensus 6 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~p~~~ 77 (137)
T 3q49_B 6 SPSAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM----QQPEQALADCRRALELDGQSV 77 (137)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCH
T ss_pred cccHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHhCchhH
Confidence 3578889999999998 8999999999999965 46899999999999763 3999999999999985 668
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVYLELATRAGET 301 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~ 301 (336)
.+++++|.++...|++++|+.+|+++++..+.
T Consensus 78 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 78 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 89999999999999999999999999986533
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.96 E-value=5.2e-09 Score=82.84 Aligned_cols=98 Identities=17% Similarity=-0.057 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--C-------CH-----HHHHHHHHHHHcCCCCcccHHHHHHHHHH
Q 019734 197 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--G-------YV-----RAMYNTSLCYSFGEGLPLSHRQARKWMKR 262 (336)
Q Consensus 197 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~-------~~-----~a~~~lg~~~~~~~g~~~~~~~A~~~~~~ 262 (336)
...+.++|..+.. .+++++|+..|++|++. . +. .++.++|.++.... ++++|+.+|++
T Consensus 11 a~~~~~~G~~l~~----~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg----r~~eAl~~~~k 82 (159)
T 2hr2_A 11 AYLALSDAQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR----SFDEALHSADK 82 (159)
T ss_dssp HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC----CHHHHHHHHHH
Confidence 4567788888887 78999999999999653 4 33 38999999997633 99999999999
Q ss_pred HHHc---------CCHHHH----HHHHHHhhccCCHHHHHHHHHHHHHcCcHH
Q 019734 263 AADC---------GHGKAQ----LEHGLGLFTEGEMMKAVVYLELATRAGETA 302 (336)
Q Consensus 263 a~~~---------~~~~a~----~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 302 (336)
+++. ++..++ ++.|.++...|++++|+..|++|++..+.+
T Consensus 83 AL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 83 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 9976 457788 999999999999999999999999875443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-08 Score=81.68 Aligned_cols=100 Identities=21% Similarity=0.081 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHcCCCCcccHHH
Q 019734 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--------------------GYVRAMYNTSLCYSFGEGLPLSHRQ 255 (336)
Q Consensus 196 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--------------------~~~~a~~~lg~~~~~~~g~~~~~~~ 255 (336)
.+.++..+|..+.. .+++++|+.+|++++.. ....+++++|.+|... +++++
T Consensus 10 ~a~~~~~~G~~~~~----~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~----~~~~~ 81 (162)
T 3rkv_A 10 SVEALRQKGNELFV----QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI----GDLHE 81 (162)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH----TCHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc----CcHHH
Confidence 35677888888887 78999999999988653 4567899999999763 39999
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHH
Q 019734 256 ARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 303 (336)
Q Consensus 256 A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a 303 (336)
|+.++++++.. .++.+++.+|.+|...|++++|+.+|++++...+.+.
T Consensus 82 A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 82 AEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 99999999985 6789999999999999999999999999999865543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-07 Score=84.02 Aligned_cols=211 Identities=7% Similarity=-0.102 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHc--CCHHHHHHHHHHHHH-----
Q 019734 121 LDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDK----------KEAAISLYRQAAVL--GDPAGQFNLGISYLQ----- 181 (336)
Q Consensus 121 ~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~----------~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----- 181 (336)
.++|+.++.+++.. .+..+|+..+.++...+. +++++.++.+++.. .+..+|+..+.++..
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 45899999999987 588999999999877654 68999999998854 799999999999987
Q ss_pred -HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccC-HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCC-------
Q 019734 182 -EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFN-LQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEG------- 248 (336)
Q Consensus 182 -~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~-~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g------- 248 (336)
++++.++.++++. .+..|+.+-+.++.. .+. +++++.++.++++ +.+..|+++.+.++.....
T Consensus 126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~----l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 126 WARELELCARFLEADERNFHCWDYRRFVAAQ----AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccc
Confidence 7999999999886 589999999999886 455 6899999999975 4789999999999865311
Q ss_pred ---CcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhcc-----------CCHHHHHHHHHHHHHcCcHHHHHHHHHHH-
Q 019734 249 ---LPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTE-----------GEMMKAVVYLELATRAGETAADHVKNVIL- 311 (336)
Q Consensus 249 ---~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~-----------~~~~~A~~~~~~A~~~~~~~a~~~~~~~~- 311 (336)
....+++++.++.+++.. ++..+++.+..++... +.+++++.++++.++..+......+..+.
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~ 281 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 281 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHH
Confidence 014689999999999974 7788887666555554 46899999999999876554444444332
Q ss_pred -hhc-ChhcHHHHHHHHHHhhcCCCC
Q 019734 312 -QQL-SATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 312 -~~~-~~~~~~~a~~~~~~~~~~~~~ 335 (336)
..+ ..+..++......++++..|.
T Consensus 282 ~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 282 MRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred HHhhcccccHHHHHHHHHHHHHhCcc
Confidence 222 234566778888888877764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-08 Score=74.53 Aligned_cols=107 Identities=9% Similarity=0.004 Sum_probs=95.0
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
.....+...+..|++++|+..+.+.++..+. ++.+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH--NHVLYSNRSAAYAK----KGDYQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4466677778899999999999999988776 79999999999998 68999999999999987 4789999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISY 179 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~ 179 (336)
.++...|++++|+.+|+++++. +++.++..++.+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999876 6788888888765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-08 Score=77.43 Aligned_cols=89 Identities=25% Similarity=0.293 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
++..++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++...|++++|+.+|++++.. +++.+++.+
T Consensus 8 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 67777777877777 57788888888877775 46777778888887778888777777777643 455555555
Q ss_pred HHHHHH----HHHHHHHHHHH
Q 019734 176 GISYLQ----EEAVKLLYQAS 192 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~ 192 (336)
|.++.. ++|+.+|++++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 555554 44444444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2.4e-08 Score=75.29 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
+.+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++...|++++|+.+|.++++.
T Consensus 4 ~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 67 (131)
T 1elr_A 4 ALKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (131)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 4566777777766 46777777777777765 36677777777777777777777777776643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.5e-08 Score=74.46 Aligned_cols=108 Identities=18% Similarity=0.192 Sum_probs=95.2
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
.....+...+..|++++|...+.+.++..+. ++.+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la 84 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--cHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 4455666677889999999999999988765 78999999999998 58999999999999986 5789999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYL 180 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~ 180 (336)
.++...|++++|+.+|+++++. .++.++..+|.++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999999999999999999865 78999999998875
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-08 Score=80.56 Aligned_cols=101 Identities=14% Similarity=0.025 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C-------CH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--G-------ST-----LAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~-------~~-----~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (336)
.+..+..+|..++. .+++++|+.+|++|++. . +. .+++++|.++...|++++|+..|.+|++
T Consensus 10 ~a~~~~~~G~~l~~----~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 10 GAYLALSDAQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677888888887 68999999999999876 3 22 3889999999999999999999988875
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHH----HHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 019734 166 LGDPAGQFNLGISYLQEEAVKLLYQASI--AGHVRAQ----YQLALCLHRGRGVDFNLQEAARWYLRAAE 229 (336)
Q Consensus 166 ~~~~~a~~~Lg~~~~~~~A~~~~~ka~~--~~~~~a~----~~lg~~~~~g~g~~~~~~~A~~~~~~a~~ 229 (336)
. |.++.+ .+++.++ +++|.++.. .+++++|+..|+++++
T Consensus 86 l---------------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~----lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 86 Y---------------------FNRRGELNQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVVE 130 (159)
T ss_dssp H---------------------HHHHCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred h---------------------hhccccCCCchHHHHHHHHHhHHHHHHH----CCCHHHHHHHHHHHHh
Confidence 3 222221 2344444 555555555 5566666666666643
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3e-08 Score=74.81 Aligned_cols=109 Identities=14% Similarity=0.087 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CC----
Q 019734 197 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GH---- 268 (336)
Q Consensus 197 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~---- 268 (336)
+.+++.+|.++.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|++++.. .+
T Consensus 4 ~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 4 ALKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhccccchhH
Confidence 4678889999887 78999999999999764 678999999999975 33999999999999875 23
Q ss_pred ---HHHHHHHHHHhhccCCHHHHHHHHHHHHHcC-cHHHHHHHHHHHhh
Q 019734 269 ---GKAQLEHGLGLFTEGEMMKAVVYLELATRAG-ETAADHVKNVILQQ 313 (336)
Q Consensus 269 ---~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~-~~~a~~~~~~~~~~ 313 (336)
..+++++|.++...|++++|..+|+++++.. ++.....+..+...
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7788999999999999999999999999864 45555555554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.9e-08 Score=76.11 Aligned_cols=110 Identities=12% Similarity=-0.025 Sum_probs=95.4
Q ss_pred ChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCC---HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHH
Q 019734 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLRE---AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTL 138 (336)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~ 138 (336)
........+...+..|++.+|+..+.+.++..++ + ..+++.+|.+|.. .+++++|+.+|++++.. .++.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~ 100 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT--PQDQAVLHRNRAACHLK----LEDYDKAETEASKAIEKDGGDVK 100 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC--HHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTSCCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc--chHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHhhCccCHH
Confidence 4556678888889999999999888888877554 4 7899999999998 68999999999999986 5799
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 139 AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISY 179 (336)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~ 179 (336)
+++.+|.++...|++++|+.+|+++++. ++..++..++.+.
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999865 6788887777654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-08 Score=76.71 Aligned_cols=91 Identities=16% Similarity=0.125 Sum_probs=44.9
Q ss_pred HHHhcCCChhHHhhhHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC---HHHHHHHH
Q 019734 71 KIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GS---TLAMVDAG 144 (336)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~---~~a~~~lg 144 (336)
.+...+..|++.+|+..+..+++..|+.. .+.+++.+|.+|.. .+++++|+.+|++++.. ++ +.+++.+|
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA----TRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 33444445555555555555555444311 11455555555555 34555555555555543 23 44555555
Q ss_pred HHHhcCCCHHHHHHHHHHHHH
Q 019734 145 LMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~ 165 (336)
.++...|++++|+.+|+++++
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.9e-08 Score=74.49 Aligned_cols=94 Identities=20% Similarity=0.231 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCH---HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CC--
Q 019734 198 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYV---RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GH-- 268 (336)
Q Consensus 198 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~---~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~-- 268 (336)
.+++.+|.++.. .+++++|+..|++++. +++. .+++.+|.+|... +++++|+.+|++++.. ++
T Consensus 3 ~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~----~~~~~A~~~~~~~~~~~p~~~~ 74 (129)
T 2xev_A 3 RTAYNVAFDALK----NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYAT----RNFQLAEAQFRDLVSRYPTHDK 74 (129)
T ss_dssp CCHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHCCCCcc
Confidence 457889999888 8999999999999976 3455 7999999999763 3999999999999985 45
Q ss_pred -HHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 269 -GKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 269 -~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
+.+++++|.++...|++++|..+|++++...
T Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 7889999999999999999999999999864
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-08 Score=80.22 Aligned_cols=109 Identities=10% Similarity=-0.036 Sum_probs=71.7
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhC----------------CCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALR----------------PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLK 130 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~ 130 (336)
.+...+..++..|++.+|+..|.+.++..+ +..++.+++++|.+|.. .+++++|+.++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN----IGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH----HTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHH
Confidence 345666667777777777777777776611 11145677777777776 5677777777777
Q ss_pred HHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCH-HHHHHHHHHH
Q 019734 131 GAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDP-AGQFNLGISY 179 (336)
Q Consensus 131 A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~-~a~~~Lg~~~ 179 (336)
++.. .++.+++.+|.+|...|++++|+..|+++++. +++ .....|+.+.
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 7765 46777777777777777777777777777654 444 3344444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-08 Score=91.34 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH----------------c--CCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----------------R--GSTLAMVDAGLMYWEMDKKEAAISLYRQ 162 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~----------------~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (336)
+..+..+|..+.. .+++++|+.+|++|++ . .+..+++++|.+|...+++++|+.+|++
T Consensus 223 a~~~~~~g~~~~~----~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 223 SEDLKNIGNTFFK----SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 4557777777777 5788888888888776 2 2456667777777777777777777777
Q ss_pred HHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019734 163 AAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHR 209 (336)
Q Consensus 163 a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~ 209 (336)
+++. +++.+++.+|.+|.. ++|+.+|+++++. ++..++..++.++..
T Consensus 299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 353 (370)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 7654 456666666666655 5555555555443 344455555555443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.89 E-value=6.2e-09 Score=93.71 Aligned_cols=96 Identities=13% Similarity=0.001 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC--cHHHHHHHHHH
Q 019734 235 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVI 310 (336)
Q Consensus 235 a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~~~~~ 310 (336)
+++++|.+|.... ++++|+.+|++++.. .+..+++++|.+|...|++++|+.+|+++++.. +..+...+..+
T Consensus 232 ~~~nla~~~~~~g----~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 232 CHLNIAACLIKLK----RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHHHHTTT----CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred HHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 6777888776532 778888888888764 457777888888888888888888888887654 33444444444
Q ss_pred HhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 311 LQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 311 ~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
... .....++++...+++....|.
T Consensus 308 ~~~-~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 308 AEQ-EKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp -------------------------
T ss_pred HHH-HHHHHHHHHHHHHHhhCCCCC
Confidence 322 234455556666666665554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-08 Score=74.44 Aligned_cols=98 Identities=10% Similarity=-0.055 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--C--C
Q 019734 195 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--G--H 268 (336)
Q Consensus 195 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~--~ 268 (336)
+++.+++.+|.++.. .+++++|+.+|+++++. .+..+++++|.++.... ++++|+.+|++++.. . +
T Consensus 4 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~----~~~~A~~~~~~a~~~~~~~~~ 75 (112)
T 2kck_A 4 QNPEEYYLEGVLQYD----AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLE----RYEEAVDCYNYVINVIEDEYN 75 (112)
T ss_dssp SSTTGGGGHHHHHHS----SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSCCTTC
T ss_pred CcHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhCcccch
Confidence 456678889999988 78999999999999764 67899999999997633 899999999999985 5 6
Q ss_pred HHHHHHHHHHhhcc-CCHHHHHHHHHHHHHcCc
Q 019734 269 GKAQLEHGLGLFTE-GEMMKAVVYLELATRAGE 300 (336)
Q Consensus 269 ~~a~~~lg~~~~~~-~~~~~A~~~~~~A~~~~~ 300 (336)
..+++++|.++... |++++|..++++++...+
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 78889999999999 999999999999987653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-09 Score=102.15 Aligned_cols=114 Identities=12% Similarity=0.105 Sum_probs=76.2
Q ss_pred HHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISY 179 (336)
Q Consensus 104 ~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~ 179 (336)
++.+|.++.. .+++++|+.+|++|++. .++.+++++|.+|...|++++|+.+|+++++. +++.+++++|.+|
T Consensus 9 ~~~lg~~~~~----~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 9 LKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp SSSSSSSTTT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH----hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4445555554 46777777777777765 46777777777777777777777777777754 5677777777777
Q ss_pred HH----HHHHHHHHHHHHc--CCHHHHHHHHHH--HhcCCCCccCHHHHHHHHH
Q 019734 180 LQ----EEAVKLLYQASIA--GHVRAQYQLALC--LHRGRGVDFNLQEAARWYL 225 (336)
Q Consensus 180 ~~----~~A~~~~~ka~~~--~~~~a~~~lg~~--~~~g~g~~~~~~~A~~~~~ 225 (336)
.. ++|+.+|+++++. ++..++.+++.+ +.. .+++++|+..++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH----HHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHhcccc
Confidence 76 7777777777664 456677777776 554 567777777777
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=92.04 Aligned_cols=148 Identities=13% Similarity=0.033 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCc
Q 019734 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQF-NLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVD 214 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~-~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~ 214 (336)
....++.+|..++..|++++|+.+|++++........+ .++.. .++...+ ...+++++|.+|.. .
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~---~~~~~~l-------~~~~~~nla~~~~~----~ 243 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKY---QDMALAV-------KNPCHLNIAACLIK----L 243 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHH---HHHHHHH-------HTHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccH---HHHHHHH-------HHHHHHHHHHHHHH----c
Confidence 35667888888888888888888888888764433211 11110 2222221 12477888988887 7
Q ss_pred cCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhh-ccCCHHHHH
Q 019734 215 FNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLF-TEGEMMKAV 289 (336)
Q Consensus 215 ~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~-~~~~~~~A~ 289 (336)
+++++|+.+|+++++ +.+..+++++|.+|.... ++++|+.+|++++.. ++..++.+|+.+.. ..+..+++.
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g----~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELG----QMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT----CHHHHHHHHHHTTC---------------------------
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999998865 467888999999986533 899999999998764 56777888888743 456788888
Q ss_pred HHHHHHHHcCcH
Q 019734 290 VYLELATRAGET 301 (336)
Q Consensus 290 ~~~~~A~~~~~~ 301 (336)
..|++++...+.
T Consensus 320 ~~~~~~l~~~p~ 331 (338)
T 2if4_A 320 EMYKGIFKGKDE 331 (338)
T ss_dssp ------------
T ss_pred HHHHHhhCCCCC
Confidence 888888876543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.7e-08 Score=72.88 Aligned_cols=97 Identities=15% Similarity=0.010 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGI 177 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~ 177 (336)
++.+++.+|.++.. .+++++|+.+|++++.. .+..+++.+|.++...|++++|+.+|+++++..
T Consensus 5 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---------- 70 (112)
T 2kck_A 5 NPEEYYLEGVLQYD----AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI---------- 70 (112)
T ss_dssp STTGGGGHHHHHHS----SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS----------
T ss_pred cHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------
Confidence 44555556666655 35666666666666554 345555666666665666665555555555321
Q ss_pred HHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCc-cCHHHHHHHHHHHHHC
Q 019734 178 SYLQEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVD-FNLQEAARWYLRAAEG 230 (336)
Q Consensus 178 ~~~~~~A~~~~~ka~~~~--~~~a~~~lg~~~~~g~g~~-~~~~~A~~~~~~a~~~ 230 (336)
.. +..+++.+|.++.. . +++++|+.++++++..
T Consensus 71 ----------------~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 71 ----------------EDEYNKDVWAAKADALRY----IEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp ----------------CCTTCHHHHHHHHHHHTT----CSSCSHHHHHHHHHHGGG
T ss_pred ----------------cccchHHHHHHHHHHHHH----HhCCHHHHHHHHHHHhhc
Confidence 12 44555556666655 6 6777777777776543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.6e-08 Score=75.91 Aligned_cols=81 Identities=14% Similarity=0.098 Sum_probs=46.1
Q ss_pred hhHHhhhHHHHHHHHH---hCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCH
Q 019734 79 PQLRAASLVCKSWNDA---LRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKK 153 (336)
Q Consensus 79 ~~~~~a~~~~~~~~~~---~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~ 153 (336)
|++++|+..+.+.++. .|+ ++.+++.||.+|.. .+++++|+.+|+++++. +++.+++.+|.++...|++
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~--~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKD--LAECYLGLGSTFRT----LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRY 77 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHH--HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred CcHHHHHHHHHHHHHcCCCCcc--HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCH
Confidence 4555565555555554 233 45566666666665 45666666666666654 3566666666666666666
Q ss_pred HHHHHHHHHHHH
Q 019734 154 EAAISLYRQAAV 165 (336)
Q Consensus 154 ~~A~~~~~~a~~ 165 (336)
++|+.+|++++.
T Consensus 78 ~~A~~~~~~al~ 89 (117)
T 3k9i_A 78 EQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.77 E-value=6.4e-08 Score=88.18 Aligned_cols=79 Identities=16% Similarity=0.053 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC--cHHHHHH
Q 019734 231 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHV 306 (336)
Q Consensus 231 ~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~ 306 (336)
.+..+++++|.+|.... ++++|+.+++++++. +++.+++++|.+|...|++++|+.+|++|++.. +..+...
T Consensus 271 ~~~~~~~nla~~~~~~g----~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~ 346 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMS----DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 346 (370)
T ss_dssp HHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34667778888876533 788888888888764 557778888888888888888888888887764 4455555
Q ss_pred HHHHHhh
Q 019734 307 KNVILQQ 313 (336)
Q Consensus 307 ~~~~~~~ 313 (336)
+..+...
T Consensus 347 l~~~~~~ 353 (370)
T 1ihg_A 347 LLKVKQK 353 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3e-07 Score=88.41 Aligned_cols=163 Identities=6% Similarity=-0.153 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHc--CCHHHHHHHHHHHHH-----
Q 019734 121 LDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDK----------KEAAISLYRQAAVL--GDPAGQFNLGISYLQ----- 181 (336)
Q Consensus 121 ~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~----------~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----- 181 (336)
.++|+.++++++.. .+..+|+..+.++...++ +++++.++.++++. .+..+|++.+.++..
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 34666666666655 356666666666666555 66666666666543 566666666666655
Q ss_pred -HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCcc-CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC-------
Q 019734 182 -EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDF-NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEG------- 248 (336)
Q Consensus 182 -~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~-~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g------- 248 (336)
++++.++.++++. .+..||++.+.++.. .+ .++++++++.++++. .+..||++.+.++....+
T Consensus 125 ~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~----l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 125 WARELELCARFLEADERNFHCWDYRRFVAAQ----AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHH----cCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 5666666666654 366666666666655 34 677788888887643 577888888887754210
Q ss_pred ---CcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHH
Q 019734 249 ---LPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMK 287 (336)
Q Consensus 249 ---~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~ 287 (336)
....++++++++.+|+.. ++..+++.++.++...+.+++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 124678899999998874 678888888888877776444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.74 E-value=4e-08 Score=73.68 Aligned_cols=92 Identities=12% Similarity=0.082 Sum_probs=72.8
Q ss_pred ccCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHH
Q 019734 214 DFNLQEAARWYLRAAEG-----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMM 286 (336)
Q Consensus 214 ~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~ 286 (336)
.+++++|+.+|+++++. .++.+++++|.+|.... ++++|+.+|++++.. +++.+++++|.++...|+++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG----EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHH
Confidence 57889999999999865 35688999999997633 999999999999885 67889999999999999999
Q ss_pred HHHHHHHHHHHc--CcHHHHHHHHH
Q 019734 287 KAVVYLELATRA--GETAADHVKNV 309 (336)
Q Consensus 287 ~A~~~~~~A~~~--~~~~a~~~~~~ 309 (336)
+|+.+|++++.. +++........
T Consensus 79 ~A~~~~~~al~~~p~~~~~~~~~~a 103 (117)
T 3k9i_A 79 QGVELLLKIIAETSDDETIQSYKQA 103 (117)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHTHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 999999999876 34444433333
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.5e-07 Score=87.93 Aligned_cols=160 Identities=8% Similarity=-0.150 Sum_probs=137.7
Q ss_pred HHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCC----------HHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019734 81 LRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKN----------LDKALDSFLKGAAR--GSTLAMVDAGLMYW 148 (336)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~----------~~~A~~~~~~A~~~--~~~~a~~~lg~~~~ 148 (336)
.++|...+.+.++..|+ +..+|+..|.++.. .++ +++++.++++++.. .+..+|+..+.++.
T Consensus 45 ~eeal~~~~~~l~~nP~--~~taW~~R~~~l~~----l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 45 DESVLELTSQILGANPD--FATLWNCRREVLQH----LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp SHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCch--hHHHHHHHHHHHHh----cccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34778899999999888 89999999999887 234 99999999999987 48999999999999
Q ss_pred cCC--CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH-----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC------
Q 019734 149 EMD--KKEAAISLYRQAAVL--GDPAGQFNLGISYLQ-----EEAVKLLYQASIA--GHVRAQYQLALCLHRGR------ 211 (336)
Q Consensus 149 ~~~--~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~-----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~------ 211 (336)
..+ ++++++.++.++++. .+..||.+.|.++.. +++++++.++++. .+..||++.|.++..-.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999999866 789999999999887 8999999999876 58999999999876510
Q ss_pred ----CCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcC
Q 019734 212 ----GVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFG 246 (336)
Q Consensus 212 ----g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~ 246 (336)
-..+.++++++++.+|+. +++..+|++++.++..+
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcC
Confidence 012668999999999964 68999999999999664
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.6e-07 Score=66.26 Aligned_cols=77 Identities=21% Similarity=0.334 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
++.+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++...|++++|+.+|+++++. +++.++.++
T Consensus 8 ~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 83 (91)
T 1na3_A 8 SAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 56788999999988 58999999999999986 57899999999999999999999999999865 788999999
Q ss_pred HHHHH
Q 019734 176 GISYL 180 (336)
Q Consensus 176 g~~~~ 180 (336)
|.++.
T Consensus 84 ~~~~~ 88 (91)
T 1na3_A 84 GNAKQ 88 (91)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.71 E-value=5.2e-07 Score=79.36 Aligned_cols=164 Identities=7% Similarity=-0.115 Sum_probs=77.3
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 019734 124 ALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPAGQFNLGISYLQ----EEAVKLLYQASI 193 (336)
Q Consensus 124 A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~~----~~A~~~~~ka~~ 193 (336)
|+..|++.+.. ....+.+.+|.++...|++++|+.++.+.++. ++.++...++.++.. +.|.+.+++..+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444444432 23444455555555555555555555555544 234444455555544 444444444433
Q ss_pred cCC------HHHHHHHHHH--Hh-cCCCCccCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCcccHHHHHHHH
Q 019734 194 AGH------VRAQYQLALC--LH-RGRGVDFNLQEAARWYLRAAEGGY----VRAMYNTSLCYSFGEGLPLSHRQARKWM 260 (336)
Q Consensus 194 ~~~------~~a~~~lg~~--~~-~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~~~g~~~~~~~A~~~~ 260 (336)
... -....+|+.. .. .| .+++..|+..|+.+++... +...++ ++.. .+++++|...+
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g---~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~----~g~~~eAe~~L 234 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATN---KETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQ----QRNIAEAQGIV 234 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHT---CSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHH----HTCHHHHHHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHH----cCCHHHHHHHH
Confidence 322 2223333322 11 11 1355666666666544321 222222 3332 12666666666
Q ss_pred HHHHH------------cCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 261 KRAAD------------CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 261 ~~a~~------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
+.... .+++++..|+..+....|+ +|..+++++....
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 54332 3345555555555555555 5556666665543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.5e-06 Score=75.43 Aligned_cols=205 Identities=9% Similarity=-0.131 Sum_probs=156.6
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH------HHHHHHH
Q 019734 120 NLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD-KKEAAISLYRQAAVL--GDPAGQFNLGISYLQ------EEAVKLL 188 (336)
Q Consensus 120 ~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~------~~A~~~~ 188 (336)
..++|+.++++++.. .+..+++..+.++...+ ++++++.++.+++.. .+..+++..+.++.. ++++.++
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 456899999999987 58999999999999998 699999999999865 799999999999876 7999999
Q ss_pred HHHHHc--CCHHHHHHHHHHHhcCCCCccCH--------HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC---CcccH
Q 019734 189 YQASIA--GHVRAQYQLALCLHRGRGVDFNL--------QEAARWYLRAAEG--GYVRAMYNTSLCYSFGEG---LPLSH 253 (336)
Q Consensus 189 ~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~--------~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g---~~~~~ 253 (336)
.++++. .+..++++.+.++.. .+.+ .+++.+++++++. .+..|+++.+.++....+ ....+
T Consensus 149 ~k~L~~dpkNy~AW~~R~wvl~~----l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 149 HGSLLPDPKNYHTWAYLHWLYSH----FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHTSSCTTCHHHHHHHHHHHHH----HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHH----hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHH
Confidence 999876 588999999988765 3333 3899999999764 689999999999965432 12237
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCH--------------------HHHHHHHHHHHH--------cCcHHH
Q 019734 254 RQARKWMKRAADC--GHGKAQLEHGLGLFTEGEM--------------------MKAVVYLELATR--------AGETAA 303 (336)
Q Consensus 254 ~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~--------------------~~A~~~~~~A~~--------~~~~~a 303 (336)
+++++++++++.. ++..+++.+..++...|+. .+-.......+. ...+.+
T Consensus 225 ~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 225 QDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 8999999999874 7788998888878776543 222222222222 134567
Q ss_pred HHHHHHHHhhcChhcHHHHHHHHHHhh
Q 019734 304 DHVKNVILQQLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ 330 (336)
...+..++... ++.++|..+++.+.
T Consensus 305 l~~l~d~~~~~--~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 305 LEYLADSFIEQ--NRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHH
Confidence 77777776653 56688888888886
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=5.3e-08 Score=76.87 Aligned_cols=86 Identities=15% Similarity=0.124 Sum_probs=68.3
Q ss_pred hhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC------CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC
Q 019734 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR------GVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEM 150 (336)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~------g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~ 150 (336)
+.+++|+..+...++..|+ ++++++++|.++..-- +..+.+++|+..|++|++. .++++++++|.+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 4588888888888888877 8999999999888710 0112357999999999987 4789999999999876
Q ss_pred C-----------CHHHHHHHHHHHHHc
Q 019734 151 D-----------KKEAAISLYRQAAVL 166 (336)
Q Consensus 151 ~-----------~~~~A~~~~~~a~~~ 166 (336)
| ++++|+.+|++|++.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 4 788888888888765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.70 E-value=5.9e-08 Score=91.48 Aligned_cols=110 Identities=11% Similarity=0.009 Sum_probs=94.9
Q ss_pred hcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC
Q 019734 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD 151 (336)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~ 151 (336)
.++..|++++|+..+.+.++..++ ++.+++.+|.+|.. .+++++|+.+|++|++. .++.+++++|.+|...|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~--~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLR----TECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 446889999999999999999777 79999999999999 68999999999999997 58999999999999999
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHH--HHH----HHHHHHHH
Q 019734 152 KKEAAISLYRQAAVL--GDPAGQFNLGIS--YLQ----EEAVKLLY 189 (336)
Q Consensus 152 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~--~~~----~~A~~~~~ 189 (336)
++++|+.+|+++++. +++.++.+++.+ +.. ++|+..++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999865 678899999988 554 88888888
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.69 E-value=8.6e-07 Score=81.57 Aligned_cols=195 Identities=10% Similarity=-0.042 Sum_probs=131.0
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHhcCCCHHHHHHHHHH
Q 019734 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS-------------------TLAMVDAGLMYWEMDKKEAAISLYRQ 162 (336)
Q Consensus 102 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~-------------------~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (336)
.+...-|.-+.. .+++++|+..|.++++... ..++.+||.+|...|++++|+.+|.+
T Consensus 5 ~~~l~~a~~l~~----~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~ 80 (434)
T 4b4t_Q 5 GSKLEEARRLVN----EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPH 80 (434)
T ss_dssp THHHHHHHHHHH----HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344445555554 4678888888888776410 13567777777777777777777776
Q ss_pred HHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--------CC
Q 019734 163 AAVL--GDPAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--------GY 232 (336)
Q Consensus 163 a~~~--~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--------~~ 232 (336)
+... ....+. ........+|.++.. .+++++|+.++++++.. ..
T Consensus 81 ~~~~~~~~~~~~----------------------~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (434)
T 4b4t_Q 81 STEYMMQFAKSK----------------------TVKVLKTLIEKFEQV----PDSLDDQIFVCEKSIEFAKREKRVFLK 134 (434)
T ss_dssp THHHHHTSCHHH----------------------HHHHHHHHHHHHCSC----CSCHHHHHHHHHHHHHHHHHSSCCSSH
T ss_pred HHHHHHHccchH----------------------HHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHhCccHHH
Confidence 6532 110100 012334567777766 78999999999988642 23
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----C----CHHHHHHHHHHhhccCCHHHHHHHHHHHHHc----C-
Q 019734 233 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----G----HGKAQLEHGLGLFTEGEMMKAVVYLELATRA----G- 299 (336)
Q Consensus 233 ~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~----~- 299 (336)
.....+||.+|.. .+++.+|...++.+... + ....+..+|.+|...|++++|..+|+++... +
T Consensus 135 ~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 210 (434)
T 4b4t_Q 135 HSLSIKLATLHYQ----KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC 210 (434)
T ss_dssp HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHH----ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC
Confidence 6788999999976 33999999999999762 1 2567799999999999999999999999863 2
Q ss_pred cH--HHHHHHHHHHhhcChhcHHHHHHHHHHhh
Q 019734 300 ET--AADHVKNVILQQLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 300 ~~--~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 330 (336)
++ .+.........+....+.++|.....+..
T Consensus 211 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 211 PTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 22 23333444444556666777666555443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-06 Score=85.27 Aligned_cols=206 Identities=9% Similarity=-0.052 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 019734 123 KALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAI-SLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASI 193 (336)
Q Consensus 123 ~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~-~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~ 193 (336)
.....|++|+.. .+++.|+..+..+...|+.++|+ ..|.+|+.. .+...++.++.+... ++|...|+++++
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345567777664 46777777777776667767775 777777653 344444445555444 666666776654
Q ss_pred cC------------------------CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC-C--CHHHHHHHHHHHHcC
Q 019734 194 AG------------------------HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-G--YVRAMYNTSLCYSFG 246 (336)
Q Consensus 194 ~~------------------------~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~-~--~~~a~~~lg~~~~~~ 246 (336)
.. .+.++...+.+... .++.+.|...|.+|.+. . ....+...+.+-...
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR----~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR----IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Confidence 20 12345555555554 45677788888887654 2 344444445444332
Q ss_pred CCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH--HH-HHHHHHHHhhcChhcHHH
Q 019734 247 EGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET--AA-DHVKNVILQQLSATSRDR 321 (336)
Q Consensus 247 ~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~--~a-~~~~~~~~~~~~~~~~~~ 321 (336)
. ++.+.|...|+++++. .++..+...+......|+.+.|..+|++|+....+ .. ......+......++.+.
T Consensus 483 ~---~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 483 S---KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp T---SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred C---CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 2 2577888888888774 44554455555556677888888888888776541 22 222222222223355556
Q ss_pred HHHHHHHhhcCCCC
Q 019734 322 AMLVVDSWRAMPSL 335 (336)
Q Consensus 322 a~~~~~~~~~~~~~ 335 (336)
+..+.+++.+..|.
T Consensus 560 ~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 560 VRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCC
Confidence 66666666655553
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.9e-07 Score=69.50 Aligned_cols=91 Identities=13% Similarity=0.086 Sum_probs=66.7
Q ss_pred hhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHH
Q 019734 83 AASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLY 160 (336)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~ 160 (336)
+++..+.+.++..|+ ++.+++.+|.+|.. .+++++|+.+|++++.. .++.+++.+|.+|...|++++|+.+|
T Consensus 3 ~a~~~~~~al~~~p~--~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLAQGTD--NMLLRFTLGKTYAE----HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHTTTCC--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345555666666555 78888888888887 57888888888888876 46788888888888888888888888
Q ss_pred HHHHHc----CCHHHHHHHHHHH
Q 019734 161 RQAAVL----GDPAGQFNLGISY 179 (336)
Q Consensus 161 ~~a~~~----~~~~a~~~Lg~~~ 179 (336)
+++++. ++..+...+...+
T Consensus 77 ~~al~~~~~~~~~~~~~~l~~~l 99 (115)
T 2kat_A 77 ESGLAAAQSRGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhccccccHHHHHHHHHHH
Confidence 888753 4555544444333
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.5e-07 Score=67.82 Aligned_cols=78 Identities=9% Similarity=0.074 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CC------H
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD------P 169 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~------~ 169 (336)
++.+++.+|.++.. .+++++|+.+|++++.. .++.+++++|.++...|++++|+.+|+++++. ++ .
T Consensus 3 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFK----QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 46788889999988 58999999999999886 57899999999999999999999999999865 45 6
Q ss_pred HHHHHHHHHHHH
Q 019734 170 AGQFNLGISYLQ 181 (336)
Q Consensus 170 ~a~~~Lg~~~~~ 181 (336)
.+++.+|.++..
T Consensus 79 ~~~~~~~~~~~~ 90 (111)
T 2l6j_A 79 KLQYRLELAQGA 90 (111)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777776653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-07 Score=73.16 Aligned_cols=94 Identities=10% Similarity=0.059 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHc--
Q 019734 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLLYQASIA-- 194 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~A~~~~~ka~~~-- 194 (336)
+.+++|+..|+++++. +++++++++|.++...++++.+..... ..++|+..|++|++.
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~------------------~~~eAi~~le~AL~ldP 77 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ------------------MIQEAITKFEEALLIDP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH------------------HHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh------------------HHHHHHHHHHHHHHhCc
Confidence 3566777777777665 467777777777766554331111000 003455555555443
Q ss_pred CCHHHHHHHHHHHhc-CCCC------ccCHHHHHHHHHHHHHC
Q 019734 195 GHVRAQYQLALCLHR-GRGV------DFNLQEAARWYLRAAEG 230 (336)
Q Consensus 195 ~~~~a~~~lg~~~~~-g~g~------~~~~~~A~~~~~~a~~~ 230 (336)
+++++++++|.+|.. |.-+ .+++++|+.+|++|++.
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 355555555555543 0000 13677777777777654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.65 E-value=3e-07 Score=66.95 Aligned_cols=77 Identities=17% Similarity=0.202 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHH
Q 019734 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPAGQ 172 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~ 172 (336)
.++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|...|++++|+.+|+++++. ++..+.
T Consensus 5 ~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 5 EDPFTRYALAQEHLK----HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred cCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 378999999999998 58999999999999987 57889999999999999999999999999854 555555
Q ss_pred HHHHHHH
Q 019734 173 FNLGISY 179 (336)
Q Consensus 173 ~~Lg~~~ 179 (336)
..+..++
T Consensus 81 ~~l~~~l 87 (100)
T 3ma5_A 81 SELQDAK 87 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554444
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.59 E-value=4e-06 Score=73.71 Aligned_cols=165 Identities=12% Similarity=-0.010 Sum_probs=126.3
Q ss_pred hhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCHHHHHHH
Q 019734 84 ASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GSTLAMVDAGLMYWEMDKKEAAISL 159 (336)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~~~~a~~~lg~~~~~~~~~~~A~~~ 159 (336)
++..+.++++.. .+...+++.+|.++.. .+++++|++++.+.+.. ++.++...++.++...|+++.|.+.
T Consensus 85 a~~~l~~l~~~~--~~~~~~~~~la~i~~~----~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 85 NIEELENLLKDK--QNSPYELYLLATAQAI----LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp CCHHHHHTTTTS--CCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 655555555443 2357778899999999 69999999999999876 4688999999999999999999999
Q ss_pred HHHHHHcCC------HHHHHHHHHHHHH--------HHHHHHHHHHHHcC-C---HHHHHHHHHHHhcCCCCccCHHHHH
Q 019734 160 YRQAAVLGD------PAGQFNLGISYLQ--------EEAVKLLYQASIAG-H---VRAQYQLALCLHRGRGVDFNLQEAA 221 (336)
Q Consensus 160 ~~~a~~~~~------~~a~~~Lg~~~~~--------~~A~~~~~ka~~~~-~---~~a~~~lg~~~~~g~g~~~~~~~A~ 221 (336)
+++..+... -.....|+..+.. .+|+..|+.+.+.. . +...++ ++.. .+++++|.
T Consensus 159 l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~----~g~~~eAe 231 (310)
T 3mv2_B 159 FDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQ----QRNIAEAQ 231 (310)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHH----HTCHHHHH
T ss_pred HHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHH----cCCHHHHH
Confidence 998876644 4556666655433 89999999987653 2 334444 6666 78999999
Q ss_pred HHHHHHH------------HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC
Q 019734 222 RWYLRAA------------EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG 267 (336)
Q Consensus 222 ~~~~~a~------------~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~ 267 (336)
..++... +++++++..++..+.... | + +|.++++++....
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~l-g---k--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQ-G---L--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHT-T---C--TTHHHHHHHHHTT
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHh-C---h--HHHHHHHHHHHhC
Confidence 9998653 367899998887776542 3 3 7889999988753
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.2e-06 Score=63.61 Aligned_cols=71 Identities=17% Similarity=0.061 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 019734 123 KALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASI 193 (336)
Q Consensus 123 ~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~ 193 (336)
+|+.+|++++.. .++.+++.+|.+|...|++++|+.+|+++++. .++.+++++|.+|.. ++|+.+|+++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578889998876 57899999999999999999999999998854 567777777777766 666666666654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-07 Score=69.58 Aligned_cols=87 Identities=16% Similarity=0.023 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CC----
Q 019734 197 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GH---- 268 (336)
Q Consensus 197 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~---- 268 (336)
+.+++.+|.++.. .+++++|+.+|++++. +.++.+++++|.+|.... ++++|+.+|++++.. ++
T Consensus 4 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~ 75 (111)
T 2l6j_A 4 FEKQKEQGNSLFK----QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLG----EYTQAIQMCQQGLRYTSTAEHVA 75 (111)
T ss_dssp HHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTSCSSTTSHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHhCCCccHHH
Confidence 4566667777666 6677777777777654 356667777777775422 677777777777664 23
Q ss_pred --HHHHHHHHHHhhccCCHHHHHHH
Q 019734 269 --GKAQLEHGLGLFTEGEMMKAVVY 291 (336)
Q Consensus 269 --~~a~~~lg~~~~~~~~~~~A~~~ 291 (336)
..+++.+|.++...|++++|+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHHHHHhHhhhHhH
Confidence 44556666666665555544443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.7e-06 Score=61.75 Aligned_cols=66 Identities=6% Similarity=-0.164 Sum_probs=52.6
Q ss_pred HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 229 EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 229 ~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
++.++.+++.+|.+|... +++++|+.+|+++++. +++.+++++|.+|...|++++|+.+|+++++.
T Consensus 3 ~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKH----DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456788888888888653 3888888888888875 56788888999888899999999999888864
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.40 E-value=3.1e-06 Score=59.46 Aligned_cols=76 Identities=21% Similarity=0.224 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHH
Q 019734 197 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQ 272 (336)
Q Consensus 197 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~ 272 (336)
+.+++.+|.++.. .+++++|+.+|+++++. .+..+++++|.+|... +++++|+.+|++++.. +++.++
T Consensus 9 ~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~a~~~~p~~~~~~ 80 (91)
T 1na3_A 9 AEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ----GDYDEAIEYYQKALELDPNNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----hhHHHHHHHHHHHHhcCCCCHHHH
Confidence 3445555555554 45555555555555432 3455555555555432 1555555555555443 334445
Q ss_pred HHHHHHhh
Q 019734 273 LEHGLGLF 280 (336)
Q Consensus 273 ~~lg~~~~ 280 (336)
.++|.++.
T Consensus 81 ~~l~~~~~ 88 (91)
T 1na3_A 81 QNLGNAKQ 88 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.39 E-value=6e-05 Score=73.77 Aligned_cols=206 Identities=5% Similarity=-0.155 Sum_probs=151.7
Q ss_pred HhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHH-HHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHH
Q 019734 82 RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKAL-DSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAIS 158 (336)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~-~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~ 158 (336)
.....+|.+.+...|. .+..|+..+..... .++.++|. ..|++|+.. .+...++.++.+....|++++|..
T Consensus 326 ~Rv~~~Ye~aL~~~p~--~~~lW~~ya~~~~~----~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~ 399 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCF--APEIWFNMANYQGE----KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIET 399 (679)
T ss_dssp HHHHHHHHHHHHHTTT--CHHHHHHHHHHHHH----HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3455678888888777 89999999998877 46778897 999999976 466678889999999999999999
Q ss_pred HHHHHHHcC------------------------CHHHHHHHHHHHHH----HHHHHHHHHHHHc-C--CHHHHHHHHHHH
Q 019734 159 LYRQAAVLG------------------------DPAGQFNLGISYLQ----EEAVKLLYQASIA-G--HVRAQYQLALCL 207 (336)
Q Consensus 159 ~~~~a~~~~------------------------~~~a~~~Lg~~~~~----~~A~~~~~ka~~~-~--~~~a~~~lg~~~ 207 (336)
.|.++++.. ....|..++.+... +.|...|.+|++. . ....+...+.+-
T Consensus 400 iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE 479 (679)
T 4e6h_A 400 TILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE 479 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 999998631 12234444444333 8999999999886 3 356666666665
Q ss_pred hcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC-----HHHHHHHHHHhh
Q 019734 208 HRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH-----GKAQLEHGLGLF 280 (336)
Q Consensus 208 ~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~ 280 (336)
.. +.++.+.|...|+++++. .++..+...+..... .++.+.|..+|++++.... ...+......-.
T Consensus 480 ~~---~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~----~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~ 552 (679)
T 4e6h_A 480 YH---ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY----VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES 552 (679)
T ss_dssp HT---TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHH
T ss_pred HH---hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 44 135689999999999874 566666566665433 2389999999999998643 223334444445
Q ss_pred ccCCHHHHHHHHHHHHHcCc
Q 019734 281 TEGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 281 ~~~~~~~A~~~~~~A~~~~~ 300 (336)
..|+.+.+...++++.+.-+
T Consensus 553 ~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 553 KVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HTCCSHHHHHHHHHHHHHST
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 68999999999999988643
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.37 E-value=3e-06 Score=62.11 Aligned_cols=73 Identities=10% Similarity=-0.023 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCC
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAV--LGD 168 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~---------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~ 168 (336)
.+.-++.||..+.. .+++..|+.||++|++. ..+..+..||.+++..|++++|+.++++++. +++
T Consensus 4 sa~dc~~lG~~~~~----~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHH----ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 56789999999999 68999999999999874 2467889999999999999999999999975 478
Q ss_pred HHHHHHHH
Q 019734 169 PAGQFNLG 176 (336)
Q Consensus 169 ~~a~~~Lg 176 (336)
+.+..+++
T Consensus 80 ~~~~~n~~ 87 (104)
T 2v5f_A 80 QRANGNLK 87 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhHH
Confidence 88888776
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.3e-05 Score=73.83 Aligned_cols=125 Identities=10% Similarity=-0.047 Sum_probs=87.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHhcCCCCccCHHHH
Q 019734 144 GLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLLYQASIAGH---VRAQYQLALCLHRGRGVDFNLQEA 220 (336)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~---~~a~~~lg~~~~~g~g~~~~~~~A 220 (336)
+..+...|++++|+.+|+++++. .++.+-.++ ..++.+||.+|.. .+++++|
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~---------------------~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA 370 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEK---------------------QEPVFADTNLYVLRLLSIASEVLSY----LQAYEEA 370 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHH---------------------HTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHH---------------------HHHhcCCCCHHHHHHHHHHHHHHHH----hcCHHHH
Confidence 34455778888888888887642 001111112 3456677777776 7888888
Q ss_pred HHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-------CCHH---HHHHHHHHhh
Q 019734 221 ARWYLRAAEG-------GY---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-------GHGK---AQLEHGLGLF 280 (336)
Q Consensus 221 ~~~~~~a~~~-------~~---~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-------~~~~---a~~~lg~~~~ 280 (336)
+.+|+++++. .+ ..++++||.+|... | ++++|..+|++|++. +++. ...+|+.++.
T Consensus 371 ~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~-G---~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 446 (490)
T 3n71_A 371 SHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHA-G---HIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEM 446 (490)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 8888888642 22 55678889888653 2 899999999998862 3443 3468888899
Q ss_pred ccCCHHHHHHHHHHHHH
Q 019734 281 TEGEMMKAVVYLELATR 297 (336)
Q Consensus 281 ~~~~~~~A~~~~~~A~~ 297 (336)
+++.+++|...|.++.+
T Consensus 447 e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 447 ELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998854
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.7e-05 Score=71.10 Aligned_cols=85 Identities=13% Similarity=0.150 Sum_probs=44.2
Q ss_pred CCChhHHhhhHHHHHHHHHhCC-C--C---CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-------CCH---HH
Q 019734 76 FTLPQLRAASLVCKSWNDALRP-L--R---EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------GST---LA 139 (336)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~-~--~---~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-------~~~---~a 139 (336)
...|++++|..++.+.++.... . . .+..+.+||.+|.. .+++++|+.++++++.. +|+ .+
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY----LQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 3555566665555555554321 0 1 23345555555555 35566666666655532 132 34
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 140 MVDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
+++||.+|...|++++|+.+|++|+
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4556666666666666666555554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.08 E-value=3.5e-05 Score=56.29 Aligned_cols=76 Identities=9% Similarity=0.068 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc---------CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC--cH
Q 019734 233 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ET 301 (336)
Q Consensus 233 ~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~---------~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~--~~ 301 (336)
+.-++.||..+... +++..|+.||++|+.. ..+..+.+||.+|++.|++++|+.++++++... ++
T Consensus 5 a~dc~~lG~~~~~~----~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 5 AEDCFELGKVAYTE----ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHc----cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 45566777777653 3777777777777662 235667899999999999999999999998764 45
Q ss_pred HHHHHHHHHHh
Q 019734 302 AADHVKNVILQ 312 (336)
Q Consensus 302 ~a~~~~~~~~~ 312 (336)
.+..++..+..
T Consensus 81 ~~~~n~~~~~~ 91 (104)
T 2v5f_A 81 RANGNLKYFEY 91 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhhHHHHHH
Confidence 55555554333
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.9e-05 Score=56.53 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=59.5
Q ss_pred HHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTL-AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISY 179 (336)
Q Consensus 105 ~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~-a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~ 179 (336)
+.+|.++.. .+++++|+.+|++++.. .++. +++.+|.+|...|++++|+.+|+++++. +++.++++ .
T Consensus 4 ~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----~ 75 (99)
T 2kc7_A 4 LKTIKELIN----QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR----K 75 (99)
T ss_dssp HHHHHHHHH----HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH----H
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH----H
Confidence 556777777 58999999999999886 4778 9999999999999999999999998865 56666633 0
Q ss_pred HHHHHHHHHHHH
Q 019734 180 LQEEAVKLLYQA 191 (336)
Q Consensus 180 ~~~~A~~~~~ka 191 (336)
...+++.+|+++
T Consensus 76 ~~~~a~~~~~~~ 87 (99)
T 2kc7_A 76 MVMDILNFYNKD 87 (99)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHHH
Confidence 014555556554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.03 E-value=7.2e-06 Score=58.82 Aligned_cols=59 Identities=14% Similarity=-0.072 Sum_probs=36.0
Q ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHH-HHHHHHHHhhccCCHHHHHHHHHHHHHcCc
Q 019734 238 NTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGK-AQLEHGLGLFTEGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 238 ~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~-a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~ 300 (336)
..|.++.. .+++++|+.+|++++.. .++. +++++|.+|...|++++|+.+|+++++..+
T Consensus 5 ~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 5 KTIKELIN----QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHH----HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 44555543 22666666666666654 3455 666667666667777777777777666543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00013 Score=63.00 Aligned_cols=90 Identities=10% Similarity=-0.062 Sum_probs=70.0
Q ss_pred CCCccCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHhhc-
Q 019734 211 RGVDFNLQEAARWYLRAAEGG----YVRAMYNTSLCYSFG-EGLPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFT- 281 (336)
Q Consensus 211 ~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~-~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~- 281 (336)
++.......|...+++|++.+ +..++..||.+|..- ...-++.++|.++|++|++.+ +..+.+..|..+..
T Consensus 173 ~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 173 SALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIP 252 (301)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTT
T ss_pred hHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh
Confidence 456677888888899987653 466899999998763 000129999999999998852 38888999998877
Q ss_pred cCCHHHHHHHHHHHHHcCc
Q 019734 282 EGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 282 ~~~~~~A~~~~~~A~~~~~ 300 (336)
.|++++|..++++|+...+
T Consensus 253 ~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCG
T ss_pred cCCHHHHHHHHHHHHcCCC
Confidence 4999999999999998653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=5.7e-05 Score=58.89 Aligned_cols=99 Identities=11% Similarity=0.120 Sum_probs=80.2
Q ss_pred cCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC----CHHHHHHHHHHhhccCCHHHH
Q 019734 215 FNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG----HGKAQLEHGLGLFTEGEMMKA 288 (336)
Q Consensus 215 ~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~A 288 (336)
.+...+...|.+... ..+.++.+++|+++.+.. .+.+.++++..++..++.+ +.+..|+||..|++.|+|++|
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~-~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSK-YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 456677788888766 457999999999997643 3558889999999999876 256789999999999999999
Q ss_pred HHHHHHHHHcC--cHHHHHHHHHHHhhc
Q 019734 289 VVYLELATRAG--ETAADHVKNVILQQL 314 (336)
Q Consensus 289 ~~~~~~A~~~~--~~~a~~~~~~~~~~~ 314 (336)
..+++++++.. +..|......+...+
T Consensus 91 ~~y~~~lL~ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999864 577777777665544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00024 Score=63.63 Aligned_cols=152 Identities=11% Similarity=-0.044 Sum_probs=88.7
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 019734 90 SWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG 167 (336)
Q Consensus 90 ~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 167 (336)
...+..|....+--+|..|..+.. .+...++.+|+.+|++|++. +++.++-.++.+|... ......
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~-~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-----------~~~~~~ 252 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLL-HGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-----------HSQHPL 252 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------HHHSCC
T ss_pred HHhccCCCCHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------hccCCC
Confidence 455566665667777777877765 24466789999999999987 5778888877777511 000000
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
Q 019734 168 DPAGQFNLGISYLQEEAVKLLYQA--SIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYS 244 (336)
Q Consensus 168 ~~~a~~~Lg~~~~~~~A~~~~~ka--~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~ 244 (336)
.......+ ..++... .+ ....++.++..++..+.. .+++++|+.++++|+..+ +..++..+|.++.
T Consensus 253 ~~~~~~~l------~~a~~a~-~a~~~~~~~a~~~~alal~~l~----~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~ 321 (372)
T 3ly7_A 253 DEKQLAAL------NTEIDNI-VTLPELNNLSIIYQIKAVSALV----KGKTDESYQAINTGIDLEMSWLNYVLLGKVYE 321 (372)
T ss_dssp CHHHHHHH------HHHHHHH-HTCGGGTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred chhhHHHH------HHHHHHH-HhcccCCcCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 00000000 1111100 01 123456666666665554 567777777777776553 4455566677775
Q ss_pred cCCCCcccHHHHHHHHHHHHHcCC
Q 019734 245 FGEGLPLSHRQARKWMKRAADCGH 268 (336)
Q Consensus 245 ~~~g~~~~~~~A~~~~~~a~~~~~ 268 (336)
. .++.++|+.+|.+|+..++
T Consensus 322 ~----~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 322 M----KGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp H----TTCHHHHHHHHHHHHHHSC
T ss_pred H----CCCHHHHHHHHHHHHhcCC
Confidence 3 2277777777777777644
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00055 Score=61.34 Aligned_cols=70 Identities=9% Similarity=-0.145 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHH
Q 019734 230 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH-GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 303 (336)
Q Consensus 230 ~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a 303 (336)
..++.++..++..+.. .+++++|+.++++|+..++ ..++..+|.++.-.|++++|...|++|++.++...
T Consensus 274 ~~~a~~~~alal~~l~----~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALV----KGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CcCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 4677888778777643 2399999999999999754 55567889999999999999999999999876543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00027 Score=55.09 Aligned_cols=76 Identities=7% Similarity=-0.001 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHH
Q 019734 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG----STLAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQ 172 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~ 172 (336)
.+.++.|.+|.++.+ ...+.+.++++..|+..++.+ +.+++|+||..|++.+++++|+.+++++++ +++..|.
T Consensus 30 ~~~~~~F~ya~~Lv~-S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVR-SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp CCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 489999999999998 333447889999999999876 368999999999999999999999999975 4778876
Q ss_pred HHH
Q 019734 173 FNL 175 (336)
Q Consensus 173 ~~L 175 (336)
...
T Consensus 109 ~Lk 111 (152)
T 1pc2_A 109 ELE 111 (152)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00011 Score=68.08 Aligned_cols=80 Identities=13% Similarity=-0.056 Sum_probs=67.0
Q ss_pred ccCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-------CCH---HHHH
Q 019734 214 DFNLQEAARWYLRAAEG-------GY---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-------GHG---KAQL 273 (336)
Q Consensus 214 ~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-------~~~---~a~~ 273 (336)
.+++++|+..|+++++. .+ ..++.+||.+|.. .+++++|..+++++++. .++ ..++
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY----MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 46899999999999762 22 5678899999965 33999999999999872 343 4569
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHH
Q 019734 274 EHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 274 ~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
+||.+|..+|++++|..+|++|++
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999999986
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00012 Score=52.36 Aligned_cols=71 Identities=7% Similarity=-0.059 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH
Q 019734 230 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 301 (336)
Q Consensus 230 ~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~ 301 (336)
+.++..+..+|.++....+ ....++|..++++++.. +++.+.+.||..++..|++++|+.+|++.++..++
T Consensus 3 p~~~~~~~~~a~al~~~~~-~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHK-QAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTT-TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5678888888888854322 23578999999999875 67899999999999999999999999999988765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00017 Score=51.57 Aligned_cols=69 Identities=10% Similarity=-0.153 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 019734 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (336)
.+++.+..+|.++... +-....++|..+|++|+.. .++.+.+.+|..++..|++++|+.+++++++.+.
T Consensus 4 ~~~~~~~~~a~al~~~-~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYL-HKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHT-TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4789999999998652 1124579999999999987 5899999999999999999999999999997643
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00018 Score=66.60 Aligned_cols=84 Identities=12% Similarity=0.046 Sum_probs=39.9
Q ss_pred CChhHHhhhHHHHHHHHHhCC---CC---CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-----C--CH---HHH
Q 019734 77 TLPQLRAASLVCKSWNDALRP---LR---EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----G--ST---LAM 140 (336)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~---~~---~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-----~--~~---~a~ 140 (336)
..|++++|..++.+.++.... .. .+..+.+||.+|.. .|++++|+.+|++++.. | |+ ..+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY----MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 334555555555555543211 01 12344455555554 34555555555555432 1 22 234
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 141 VDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
++||.+|...|++++|+.+|++|+
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHH
Confidence 555555555555555555555554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0045 Score=58.33 Aligned_cols=110 Identities=7% Similarity=-0.132 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCcccHHH
Q 019734 182 EEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQ 255 (336)
Q Consensus 182 ~~A~~~~~ka~~~~---~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~g~~~~~~~ 255 (336)
++|...|+...+.| +...+..|-..|.. .++.++|..+|+...+.| +...+..|-..|.+. ++.++
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~----g~~~~ 158 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVA----KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK----GDADK 158 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT----TCHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC----CCHHH
Confidence 34555555544443 44455555555555 567777777777766554 555565555555442 27777
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 256 ARKWMKRAADCG---HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 256 A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
|...|+...+.| +...+..|-..|.+.|+.++|..+|++..+.+
T Consensus 159 A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 159 AYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 777777776653 35556666667777777777777777776654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00019 Score=61.97 Aligned_cols=113 Identities=12% Similarity=0.026 Sum_probs=77.7
Q ss_pred hhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCC-CcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhc-CCCH
Q 019734 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG-VRKNLDKALDSFLKGAARG---STLAMVDAGLMYWE-MDKK 153 (336)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g-~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~-~~~~ 153 (336)
+....|.....+.++..|...+..++..||.+|..--. .-||.++|..+|++|++++ +..+.+.+|..+.. .+|.
T Consensus 177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 44557777777777777665567788889998887110 1278999999999998872 48888888888877 4889
Q ss_pred HHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHHH
Q 019734 154 EAAISLYRQAAVLGDPA-GQFNLGISYLQEEAVKLLYQA 191 (336)
Q Consensus 154 ~~A~~~~~~a~~~~~~~-a~~~Lg~~~~~~~A~~~~~ka 191 (336)
++|..++++++....-. .-..+.+...+.+|..++.++
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVILSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHHHh
Confidence 99999999988653211 223455555555555554443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00031 Score=64.99 Aligned_cols=75 Identities=15% Similarity=-0.023 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------CCH---HHHHHHHHH
Q 019734 119 KNLDKALDSFLKGAAR-------GS---TLAMVDAGLMYWEMDKKEAAISLYRQAAVL-------GDP---AGQFNLGIS 178 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~-------~~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~~---~a~~~Lg~~ 178 (336)
+++++|+..|+++++. .| ..++.+||.+|...|++++|+.+++++++. .+| ..+++||.+
T Consensus 301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~ 380 (429)
T 3qwp_A 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKL 380 (429)
T ss_dssp TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHH
Confidence 3566666666666542 12 244556666666666666666666665532 222 345566666
Q ss_pred HHH----HHHHHHHHHHHH
Q 019734 179 YLQ----EEAVKLLYQASI 193 (336)
Q Consensus 179 ~~~----~~A~~~~~ka~~ 193 (336)
|.. ++|+.+|++|++
T Consensus 381 ~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 381 QLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHH
Confidence 655 566666666643
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0011 Score=61.23 Aligned_cols=80 Identities=11% Similarity=0.008 Sum_probs=67.0
Q ss_pred ccCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-------CCH---HHHH
Q 019734 214 DFNLQEAARWYLRAAEG-------GY---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-------GHG---KAQL 273 (336)
Q Consensus 214 ~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-------~~~---~a~~ 273 (336)
.+++++|+..|+++++. .+ ...+.+||.+|.. .+++++|+.++++++.. .++ ..++
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~----~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN----LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 46899999999999864 12 5678999999965 33999999999999872 333 4569
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHH
Q 019734 274 EHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 274 ~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
+||.+|..+|++++|..+|++|++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999999986
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.061 Score=50.58 Aligned_cols=163 Identities=9% Similarity=-0.031 Sum_probs=99.4
Q ss_pred CChHHHHHHHHhcC-CChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhc-CC----CCcCCHHHHHHHHHHHHHcC-
Q 019734 63 SLPFDVLNKIAASF-TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKH-GR----GVRKNLDKALDSFLKGAARG- 135 (336)
Q Consensus 63 ~~~~~~l~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~-g~----g~~~~~~~A~~~~~~A~~~~- 135 (336)
..|..++...+..+ ..|++.+|..++....+..-. ++...+..|=.++.. |. ...+++++|...|+.....|
T Consensus 23 ~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~-pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~ 101 (501)
T 4g26_A 23 QSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQ-LSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV 101 (501)
T ss_dssp -CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC
Confidence 34544454444444 668888887777776665433 345554433333333 11 11334778888888777664
Q ss_pred --CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----HHHHHHHHHHHHcC---CHHHHHHH
Q 019734 136 --STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG---DPAGQFNLGISYLQ----EEAVKLLYQASIAG---HVRAQYQL 203 (336)
Q Consensus 136 --~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~---~~~a~~~l 203 (336)
+...+..|-..|...|+.++|..+|.+..+.| +...+..|=..|.. ++|...|+...+.| +...+..|
T Consensus 102 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 102 VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 66777777777878888888888888777664 45555555455544 67777777666654 44555555
Q ss_pred HHHHhcCCCCccCHHHHHHHHHHHHHC
Q 019734 204 ALCLHRGRGVDFNLQEAARWYLRAAEG 230 (336)
Q Consensus 204 g~~~~~g~g~~~~~~~A~~~~~~a~~~ 230 (336)
-..|.. .++.++|..+|++.-+.
T Consensus 182 i~~~~~----~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 182 LKVSMD----TKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHhh----CCCHHHHHHHHHHHHHh
Confidence 555555 56677777776665443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0022 Score=50.34 Aligned_cols=108 Identities=12% Similarity=0.095 Sum_probs=79.1
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCC-------HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-----
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLRE-------AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG----- 135 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~----- 135 (336)
++.++..++..+.|+.|+.++..++....+.++ ..+++.+|..++. ++++.+|..+|++|+...
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~----~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH----DKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHHHHHHhc
Confidence 567777788999999999888887776644333 3477888999998 699999999999997541
Q ss_pred C----------------------HHHHHHHHHHHhcCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Q 019734 136 S----------------------TLAMVDAGLMYWEMDKKEAAISLYRQA-AVLGDPAGQFNLGISY 179 (336)
Q Consensus 136 ~----------------------~~a~~~lg~~~~~~~~~~~A~~~~~~a-~~~~~~~a~~~Lg~~~ 179 (336)
+ .+..|.++.||...+++++|+..++.. .....+.....||.+|
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 1 145677777777777777777776664 3446666666666655
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0085 Score=44.89 Aligned_cols=98 Identities=11% Similarity=0.121 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH----HHHHHHHHHhhccCCHHHHH
Q 019734 216 NLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG----KAQLEHGLGLFTEGEMMKAV 289 (336)
Q Consensus 216 ~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~----~a~~~lg~~~~~~~~~~~A~ 289 (336)
........|.+... .....+.+++|+++.+.. .+.+..+++..++..+..+.+ +..|.||..+++.|+|++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~-~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTR-YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSS-SHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34556667777665 356899999999997643 366778899999998877643 55699999999999999999
Q ss_pred HHHHHHHHc--CcHHHHHHHHHHHhhc
Q 019734 290 VYLELATRA--GETAADHVKNVILQQL 314 (336)
Q Consensus 290 ~~~~~A~~~--~~~~a~~~~~~~~~~~ 314 (336)
.+.+..++. ++..|......+...+
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELERLIDKAM 121 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999986 4578887777766544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=96.88 E-value=0.044 Score=51.41 Aligned_cols=167 Identities=8% Similarity=-0.098 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHHH---H-
Q 019734 121 LDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQEEAVKLLYQAS---I- 193 (336)
Q Consensus 121 ~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~~~A~~~~~ka~---~- 193 (336)
.+.....|++|+.. ..+..|+..+..+...|+.++|...|.+|+.. .+...++..+.....++...-+..+. +
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHTTCTHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHHHHHhhcchhHHHHHHHHHHHhhcc
Confidence 45677899999985 57899999999999999999999999999876 22222222222110011111111110 0
Q ss_pred --------cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 019734 194 --------AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRA 263 (336)
Q Consensus 194 --------~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a 263 (336)
......+...+.+... .++.+.|...|.+| ... ....+...+.+-.. ..++.+.|...|+++
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r----~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~---~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLK----KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYY---ATGSRATPYNIFSSG 346 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHH---HHCCSHHHHHHHHHH
T ss_pred chhhhhcccccHHHHHHHHHHHHH----cCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHH---HCCChHHHHHHHHHH
Confidence 0122456666776665 56799999999999 322 33444433433322 122789999999999
Q ss_pred HHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 019734 264 ADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELA 295 (336)
Q Consensus 264 ~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A 295 (336)
+.. +.+..+...+......|+.+.|...|+++
T Consensus 347 l~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 347 LLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 984 44555555566667789999999999997
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=96.88 E-value=0.091 Score=49.27 Aligned_cols=155 Identities=7% Similarity=-0.096 Sum_probs=92.4
Q ss_pred HHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-----CCHHHH
Q 019734 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GSTLAM 140 (336)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-----~~~~a~ 140 (336)
..+...+...|..++++.+..++.+++... ++.+.|......-.. .+ ...+.....|+.|+.. .+...|
T Consensus 15 R~vyer~l~~~P~~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~-~~--~~~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 15 SAIMEHARRLYMSKDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRK-VS--QKKFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHH-HC------CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHH-hC--chHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 456777777777788888888888888753 366655544433322 11 1234556677887763 255666
Q ss_pred HHHHHHHhc----CCCHHHHHHHHHHHHHcC--CHHHHHH----------------------------------------
Q 019734 141 VDAGLMYWE----MDKKEAAISLYRQAAVLG--DPAGQFN---------------------------------------- 174 (336)
Q Consensus 141 ~~lg~~~~~----~~~~~~A~~~~~~a~~~~--~~~a~~~---------------------------------------- 174 (336)
......+.. .++.+.+...|++|+... +.+-++.
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 666666543 256777888888887531 1111000
Q ss_pred -----HHHHHHH-H--------------HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC
Q 019734 175 -----LGISYLQ-E--------------EAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 230 (336)
Q Consensus 175 -----Lg~~~~~-~--------------~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~ 230 (336)
+=.-|.. + .....|++++.. ..+..++..+..+.. .++.++|...|++|+..
T Consensus 169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~----~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIG----IGQKEKAKKVVERGIEM 242 (493)
T ss_dssp TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhC
Confidence 0000111 1 234577777663 567788888887776 67888888888888544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.058 Score=40.33 Aligned_cols=76 Identities=8% Similarity=0.009 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHH
Q 019734 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGST----LAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQ 172 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~----~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~ 172 (336)
...++.|.+|.++.+ .....+..+++..++..+..+++ +.+|.||..+++.|++++|+.++...++ +++..|.
T Consensus 33 ~s~~~~F~yAw~Lv~-S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp CCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 588999999999988 34455677799999998877644 6889999999999999999999999875 4788876
Q ss_pred HHH
Q 019734 173 FNL 175 (336)
Q Consensus 173 ~~L 175 (336)
...
T Consensus 112 ~Lk 114 (126)
T 1nzn_A 112 ELE 114 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.038 Score=41.60 Aligned_cols=84 Identities=11% Similarity=0.109 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHc--CcHHHHH
Q 019734 231 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADH 305 (336)
Q Consensus 231 ~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~ 305 (336)
-.+.+.+++++++.+.. ...+..+++..++.....+. -+..|.|+..+++.|+|++|..+.+..++. ++..|..
T Consensus 38 vs~qt~F~yAw~Lv~S~-~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp SCHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CChhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 46889999999997764 35688899999999887543 566799999999999999999999999876 5778888
Q ss_pred HHHHHHhhcC
Q 019734 306 VKNVILQQLS 315 (336)
Q Consensus 306 ~~~~~~~~~~ 315 (336)
....+...+.
T Consensus 117 Lk~~Ie~ki~ 126 (134)
T 3o48_A 117 LKSMVEDKIQ 126 (134)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777766554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.70 E-value=0.41 Score=48.10 Aligned_cols=194 Identities=12% Similarity=0.123 Sum_probs=123.8
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH---cCC----HHHHHHHHHHHhcCCCHHHHHHHHH
Q 019734 89 KSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA---RGS----TLAMVDAGLMYWEMDKKEAAISLYR 161 (336)
Q Consensus 89 ~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~---~~~----~~a~~~lg~~~~~~~~~~~A~~~~~ 161 (336)
..|+-+..+.+...+...||.++. ++.++++..+.+-+. .++ ..|++.+|.++...++ +++.++.
T Consensus 364 ~~Wl~k~~~~~k~sA~aSLGlIh~------g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~ 435 (963)
T 4ady_A 364 LPWLGKAQNWAKFTATASLGVIHK------GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLK 435 (963)
T ss_dssp HHHHHHCCTHHHHHHHHHHHHHTS------SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHH
T ss_pred hhhhhccchHHHHHHHHHhhhhcc------CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHH
Confidence 357777665556678888898874 466677888877665 222 4577888888866664 6788887
Q ss_pred HHHHcCC--------H----HHHHHHHHHHHH---HHHHHHHHHHHHcCCH----HHHHHHHHHHhcCCCCccCHHHHHH
Q 019734 162 QAAVLGD--------P----AGQFNLGISYLQ---EEAVKLLYQASIAGHV----RAQYQLALCLHRGRGVDFNLQEAAR 222 (336)
Q Consensus 162 ~a~~~~~--------~----~a~~~Lg~~~~~---~~A~~~~~ka~~~~~~----~a~~~lg~~~~~g~g~~~~~~~A~~ 222 (336)
..+...+ . .|...||.++.. ++++..+...+..++. .|.+-||.++.- .++.+....
T Consensus 436 ~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vG----Tgn~~ai~~ 511 (963)
T 4ady_A 436 NIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLG----TGKPEAIHD 511 (963)
T ss_dssp HHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT----CCCHHHHHH
T ss_pred HHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc----cCCHHHHHH
Confidence 7775433 2 467788888877 7888888888876543 356677877763 566666566
Q ss_pred HHHHHHHCCCHH----HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHH----HHHHHHHhhccCCHHHHHHHHHH
Q 019734 223 WYLRAAEGGYVR----AMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKA----QLEHGLGLFTEGEMMKAVVYLEL 294 (336)
Q Consensus 223 ~~~~a~~~~~~~----a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a----~~~lg~~~~~~~~~~~A~~~~~~ 294 (336)
.+..+.+..+.. +...||.++. | +.+.+-...+......++.. .+.+|..|...|+...-...++.
T Consensus 512 LL~~~~e~~~e~vrR~aalgLGll~~---g---~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~ 585 (963)
T 4ady_A 512 MFTYSQETQHGNITRGLAVGLALINY---G---RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHV 585 (963)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHTT---T---CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred HHHHHhccCcHHHHHHHHHHHHhhhC---C---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 666665544433 3344555542 2 44444444444444444433 35677788888887665557777
Q ss_pred HHHcCc
Q 019734 295 ATRAGE 300 (336)
Q Consensus 295 A~~~~~ 300 (336)
+....+
T Consensus 586 ~~~d~~ 591 (963)
T 4ady_A 586 AVSDSN 591 (963)
T ss_dssp HHHCSC
T ss_pred hccCCc
Confidence 765443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.13 Score=39.20 Aligned_cols=84 Identities=11% Similarity=0.105 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHhhccCCHHHHHHHHHHHHHc--CcHHHH
Q 019734 230 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAAD 304 (336)
Q Consensus 230 ~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~ 304 (336)
.-...+.+++++++.+.. ...+..+++..++.....+ .-+..|.|+..+++.|+|++|..+.+..++. ++..|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~-~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 357889999999997654 3668889999999988753 3566799999999999999999999999986 567787
Q ss_pred HHHHHHHhhc
Q 019734 305 HVKNVILQQL 314 (336)
Q Consensus 305 ~~~~~~~~~~ 314 (336)
.....+...+
T Consensus 115 ~Lk~~Ie~~i 124 (144)
T 1y8m_A 115 ALKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.077 Score=41.59 Aligned_cols=115 Identities=11% Similarity=-0.052 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHHc--CCH---------HHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHH
Q 019734 119 KNLDKALDSFLKGAAR--GST---------LAMVDAGLMYWEMDKKEAAISLYRQAAVL-----GDPAGQFNLGISYLQE 182 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~---------~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~~ 182 (336)
+.++.|+.....++.. .++ ++++.+|..++..+++.+|...|++|++. ..+.+...++. ..
T Consensus 34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~-~s-- 110 (167)
T 3ffl_A 34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN-SA-- 110 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------------
T ss_pred hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccc-cC--
Confidence 6888888888886643 222 47889999999999999999999999854 12221111110 00
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH-HHCCCHHHHHHHHHHHH
Q 019734 183 EAVKLLYQASI-AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA-AEGGYVRAMYNTSLCYS 244 (336)
Q Consensus 183 ~A~~~~~ka~~-~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a-~~~~~~~a~~~lg~~~~ 244 (336)
-+....+ ..+.+.-|.++.||.. .+++.+|+..++.. .....+..-..||.+|.
T Consensus 111 ----s~p~s~~~~~e~Elkykia~C~~~----l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 111 ----STPQSQCLPSEIEVKYKLAECYTV----LKQDKDAIAILDGIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp ----------CCCCHHHHHHHHHHHHHH----TTCHHHHHHHHHTSCGGGCCHHHHHHHHHHCC
T ss_pred ----CCcccccccchHHHHHHHHHHHHH----HCCHHHHHHHHhcCCchhcCHHHHHHHHHHhc
Confidence 0000001 1245778999999998 89999999999876 55678888888888773
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.09 Score=40.48 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=67.2
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCccCH------HHHHHHHHHHHHCC----------CHHHHHHHHHHHHcCCCCcccHH
Q 019734 191 ASIAGHVRAQYQLALCLHRGRGVDFNL------QEAARWYLRAAEGG----------YVRAMYNTSLCYSFGEGLPLSHR 254 (336)
Q Consensus 191 a~~~~~~~a~~~lg~~~~~g~g~~~~~------~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~~~g~~~~~~ 254 (336)
.+...+++.+.......+. .+|. ++-+..|++|+..- +..-+...+... . -+|.+
T Consensus 7 ~~~p~~yd~W~~yl~llE~----~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~-e----i~D~d 77 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEK----NSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK-A----IQEPD 77 (161)
T ss_dssp ---CCSHHHHHHHHHHHHH----HTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH-H----HHCGG
T ss_pred eeCCCCHHHHHHHHHHHHH----cCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-H----hcCHH
Confidence 4556788888888877775 3555 67778888886532 123334444332 1 25999
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCc
Q 019734 255 QARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 255 ~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~ 300 (336)
+|.+.|+.++.. ..+..+...+..-.++|+..+|.+.+.+|+..+.
T Consensus 78 ~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 78 DARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp GCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 999999999875 3333334444444559999999999999999876
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.57 E-value=2.4 Score=41.59 Aligned_cols=128 Identities=16% Similarity=0.093 Sum_probs=67.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHH
Q 019734 141 VDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ-EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQE 219 (336)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~-~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~ 219 (336)
..+...+...|..++|+...+ ++..-+.++...-. ++|.+. +-...+...|..||..+.. .++++.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~------~~~~~f~~~l~~~~~~~A~~~---~~~~~~~~~W~~la~~al~----~~~~~~ 699 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP------DQDQKFELALKVGQLTLARDL---LTDESAEMKWRALGDASLQ----RFNFKL 699 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC------CHHHHHHHHHHHTCHHHHHHH---HTTCCCHHHHHHHHHHHHH----TTCHHH
T ss_pred HHHHHHHHhCCChHHheecCC------CcchheehhhhcCCHHHHHHH---HHhhCcHhHHHHHHHHHHH----cCCHHH
Confidence 445555566677777665442 23333333322211 444433 2234677788888888887 788888
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 019734 220 AARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLEL 294 (336)
Q Consensus 220 A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 294 (336)
|+.+|.++ ++......| |.. .| +.++.....+.+...+.....+. +|...|++++|++.|.+
T Consensus 700 A~~~y~~~---~d~~~l~~l---~~~-~~---~~~~~~~~~~~a~~~~~~~~A~~---~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 700 AIEAFTNA---HDLESLFLL---HSS-FN---NKEGLVTLAKDAETTGKFNLAFN---AYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHH---TCHHHHHHH---HHH-TT---CHHHHHHHHHHHHHTTCHHHHHH---HHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHc---cChhhhHHH---HHH-cC---CHHHHHHHHHHHHHcCchHHHHH---HHHHcCCHHHHHHHHHH
Confidence 88888875 333332222 221 11 55555555555555555333222 24445666666666544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.85 Score=34.68 Aligned_cols=76 Identities=1% Similarity=-0.143 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHH
Q 019734 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQ 172 (336)
Q Consensus 98 ~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~ 172 (336)
....++.|.++.++.. .....|..+++..++.....+ .-+.+|.|+.-+++.|++++|+.+....++. +|.+|.
T Consensus 36 ~vs~~t~F~YAw~Lv~-S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIK-STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHH-SSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 4578899999888887 334567889999999988753 4578999999999999999999999998854 787776
Q ss_pred HH
Q 019734 173 FN 174 (336)
Q Consensus 173 ~~ 174 (336)
..
T Consensus 115 ~L 116 (144)
T 1y8m_A 115 AL 116 (144)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.97 E-value=0.75 Score=34.52 Aligned_cols=78 Identities=1% Similarity=-0.144 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHH
Q 019734 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQ 172 (336)
Q Consensus 98 ~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~ 172 (336)
...+.+.|.++.++.+. ....|..+++..++.....+ .-+.+|.|+.-+++.|++++|+.+....++. ++..|.
T Consensus 37 ~vs~qt~F~yAw~Lv~S-~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKS-TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GSCHHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCChhhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 34788888888888773 33567889999999888754 3678999999999999999999999999854 788776
Q ss_pred HHHH
Q 019734 173 FNLG 176 (336)
Q Consensus 173 ~~Lg 176 (336)
....
T Consensus 116 ~Lk~ 119 (134)
T 3o48_A 116 ALKS 119 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.32 E-value=0.42 Score=44.69 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019734 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGIS 178 (336)
Q Consensus 103 a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 178 (336)
.+..||.+...+ .....|..||.+|+.. ++...+++||.+....++.-+|+.+|.+++-. ..+.|..+|..+
T Consensus 154 ~l~~LGDL~RY~----~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 154 CLVHLGDIARYR----NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHcccHHHHH----HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 455678887774 5678899999998886 57788889999998888888899998888744 567788888777
Q ss_pred HHH
Q 019734 179 YLQ 181 (336)
Q Consensus 179 ~~~ 181 (336)
+..
T Consensus 230 f~~ 232 (497)
T 1ya0_A 230 LSK 232 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=91.83 E-value=7 Score=35.19 Aligned_cols=91 Identities=19% Similarity=0.059 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----
Q 019734 199 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---- 266 (336)
Q Consensus 199 a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~---- 266 (336)
....||.+|.. .+++.+|...+.+..+. ++ .+.+..-..+|.. .+|+.++...|.+|...
T Consensus 101 l~~kL~~l~~~----~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~----~~n~~k~k~~l~~a~~~~~ai 172 (394)
T 3txn_A 101 LEARLIALYFD----TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA----LSNLPKARAALTSARTTANAI 172 (394)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHH----hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhhccC
Confidence 34578999988 89999999999887542 22 2334455555654 33999999999998642
Q ss_pred -CCHHHH----HHHHHHhh-ccCCHHHHHHHHHHHHH
Q 019734 267 -GHGKAQ----LEHGLGLF-TEGEMMKAVVYLELATR 297 (336)
Q Consensus 267 -~~~~a~----~~lg~~~~-~~~~~~~A~~~~~~A~~ 297 (336)
.+|..+ ..-|.++. ..++|.+|...|-.+.+
T Consensus 173 ~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 173 YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 334333 56688888 89999999999999975
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.63 E-value=1 Score=42.09 Aligned_cols=71 Identities=14% Similarity=0.021 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH--cCCHHHHHHHH
Q 019734 201 YQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD--CGHGKAQLEHG 276 (336)
Q Consensus 201 ~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg 276 (336)
..||++... ...+..|..||.+|+. ++.+..++.||.+.... .+.-+|+.+|.+++. .-.+.+..||.
T Consensus 156 ~~LGDL~RY----~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~----~~~l~a~y~y~rsl~~~~Pf~~a~~nL~ 227 (497)
T 1ya0_A 156 VHLGDIARY----RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSK----GDHLTTIFYYCRSIAVKFPFPAASTNLQ 227 (497)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHT----TCHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred HHcccHHHH----HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcc----cccHHHHHHHHHHHhcCCCChhHHHHHH
Confidence 344444444 3344555555555532 34455555555555321 144455555555543 23344444554
Q ss_pred HHh
Q 019734 277 LGL 279 (336)
Q Consensus 277 ~~~ 279 (336)
.++
T Consensus 228 ~~f 230 (497)
T 1ya0_A 228 KAL 230 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=89.88 E-value=9 Score=37.37 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 019734 136 STLAMVDAGLMYWEMDKKEAAISLYRQ 162 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (336)
++..|..||..+...++++.|+.+|.+
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444444444444444444443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.09 E-value=11 Score=32.80 Aligned_cols=127 Identities=15% Similarity=0.105 Sum_probs=70.9
Q ss_pred HHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH----cCCHHHHH
Q 019734 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----RGSTLAMV 141 (336)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~----~~~~~a~~ 141 (336)
...+.+....+..|++=+|...++....+ |.. .+++++|++.+...+. .+...+-.
T Consensus 14 ~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~R----------------y~~----~~~~~eAidlL~~ga~~ll~~~Q~~sa~ 73 (312)
T 2wpv_A 14 AKTLQRFENKIKAGDYYEAHQTLRTIANR----------------YVR----SKSYEHAIELISQGALSFLKAKQGGSGT 73 (312)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------HHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHH----------------HHH----hcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 35566666777778888887665555444 222 3677788877766543 24444444
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------HHHHHHHHHHH--HcCCHHHHHHHHHHH
Q 019734 142 DAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ------------EEAVKLLYQAS--IAGHVRAQYQLALCL 207 (336)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~------------~~A~~~~~ka~--~~~~~~a~~~lg~~~ 207 (336)
.|+..+.. .|.++-..-+.+..-.|..++.. .+|+.|-.+.- ..|+++-+..+|..|
T Consensus 74 DLa~llve---------v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~ 144 (312)
T 2wpv_A 74 DLIFYLLE---------VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKL 144 (312)
T ss_dssp HHHHHHHH---------HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHH---------HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Confidence 44443321 11111111112222222222211 56666666552 347888888888888
Q ss_pred hcCCCCccCHHHHHHHHH
Q 019734 208 HRGRGVDFNLQEAARWYL 225 (336)
Q Consensus 208 ~~g~g~~~~~~~A~~~~~ 225 (336)
.. .+++.+|..+|-
T Consensus 145 ~~----e~~~~~A~~H~i 158 (312)
T 2wpv_A 145 LE----GDFVYEAERYFM 158 (312)
T ss_dssp HH----TTCHHHHHHHHH
T ss_pred hh----cCCHHHHHHHHH
Confidence 87 678888887775
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.25 E-value=8.2 Score=30.45 Aligned_cols=54 Identities=17% Similarity=0.117 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQA 163 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 163 (336)
+++.-|.|++- -+|++.|.+..+. .++..-|..||......|+++-|..+|+++
T Consensus 7 D~~~rF~LAL~-------lg~l~~A~e~a~~---l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 7 DPHIRFDLALE-------YGNLDAALDEAKK---LNDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp CHHHHHHHHHH-------TTCHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ChHHHHHHHHh-------cCCHHHHHHHHHH---hCCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 45555555543 2577777766443 367777788888888888888887777765
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=86.21 E-value=5.9 Score=29.98 Aligned_cols=140 Identities=10% Similarity=-0.002 Sum_probs=80.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHhcCCCCccCHHHHHHHH
Q 019734 150 MDKKEAAISLYRQAAVLGDPAGQFN-LGISYLQEEAVKLLYQASIAGHV----RAQYQLALCLHRGRGVDFNLQEAARWY 224 (336)
Q Consensus 150 ~~~~~~A~~~~~~a~~~~~~~a~~~-Lg~~~~~~~A~~~~~ka~~~~~~----~a~~~lg~~~~~g~g~~~~~~~A~~~~ 224 (336)
.|..++.++...+-+...+..-.++ +-++.. .-+. ..+-.+|.++.- .+-++...-+.+|
T Consensus 20 dG~v~qGveii~k~~~ssni~E~NW~ICNiiD-------------~a~C~y~v~vLd~IGkiFDi--s~C~NlKrVi~C~ 84 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSSTKSEYNWFICNLLE-------------SIDCRYMFQVLDKIGSYFDL--DKCQNLKSVVECG 84 (172)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHH-------------HCCHHHHHHHHHHHGGGSCG--GGCSCTHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCCCccccceeeeecch-------------hhchhHHHHHHHHHhhhcCc--HhhhcHHHHHHHH
Confidence 4677777777777766654433221 222211 1111 122233444321 2346666666666
Q ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHH
Q 019734 225 LRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 302 (336)
Q Consensus 225 ~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 302 (336)
-+. +-..-++.++.-+....| ..++=.+.+...+... .+...+.++.+|.+.|+..+|...+.+|++.|-.+
T Consensus 85 ~~~---n~~se~vd~ALd~lv~~~---KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kE 158 (172)
T 1wy6_A 85 VIN---NTLNEHVNKALDILVIQG---KRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKE 158 (172)
T ss_dssp HHT---TCCCHHHHHHHHHHHHTT---CHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHh---cchHHHHHHHHHHHHHhc---cHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHH
Confidence 553 222223444444443333 3444444444433333 37888999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 019734 303 ADHVKNVI 310 (336)
Q Consensus 303 a~~~~~~~ 310 (336)
|+.....+
T Consensus 159 AC~~in~~ 166 (172)
T 1wy6_A 159 ACNAVNTL 166 (172)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhh
Confidence 99876543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=85.07 E-value=9.7 Score=29.26 Aligned_cols=33 Identities=15% Similarity=-0.005 Sum_probs=19.8
Q ss_pred cCCHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHc
Q 019734 134 RGSTLAMVDAGLMYWEMDKK------EAAISLYRQAAVL 166 (336)
Q Consensus 134 ~~~~~a~~~lg~~~~~~~~~------~~A~~~~~~a~~~ 166 (336)
-.+++.|..........|++ ++-+..|.+|+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~ 48 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA 48 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc
Confidence 35666666666666655666 5666666666543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.02 E-value=16 Score=31.96 Aligned_cols=39 Identities=10% Similarity=0.074 Sum_probs=26.1
Q ss_pred HHHHHHHHHHH--HcCCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 019734 182 EEAVKLLYQAS--IAGHVRAQYQLALCLHRGRGVDFNLQEAARWY 224 (336)
Q Consensus 182 ~~A~~~~~ka~--~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~ 224 (336)
.+|+.|=.+.- ..|+++-+..+|..|.. .+++.+|..+|
T Consensus 119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~----e~~~~~Ae~H~ 159 (336)
T 3lpz_A 119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVE----EGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHSSCTTCCHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHH
Confidence 56666665532 34777777777877776 56777777766
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=84.76 E-value=4.4 Score=30.66 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 019734 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNL 175 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~L 175 (336)
+++.++.+|..|...|+..+|-+++.+|.+.|..+|+.++
T Consensus 124 ~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kEAC~~i 163 (172)
T 1wy6_A 124 SASILVAIANALRRVGDERDATTLLIEACKKGEKEACNAV 163 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHHHHHHH
Confidence 4677777777777777777777777777777777776554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.40 E-value=16 Score=28.71 Aligned_cols=83 Identities=11% Similarity=-0.108 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHH
Q 019734 195 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLE 274 (336)
Q Consensus 195 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 274 (336)
++..-|..||..-.. .+|++.|..+|+++ ++.....-|..+. +|.++-....+.|...|+....+.
T Consensus 32 ~~~~~Wk~Lg~~AL~----~gn~~lAe~cy~~~---~D~~~L~~Ly~~t-------g~~e~L~kla~iA~~~g~~n~af~ 97 (177)
T 3mkq_B 32 NDSITWERLIQEALA----QGNASLAEMIYQTQ---HSFDKLSFLYLVT-------GDVNKLSKMQNIAQTREDFGSMLL 97 (177)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHT---TCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHH----cCChHHHHHHHHHh---CCHHHHHHHHHHh-------CCHHHHHHHHHHHHHCccHHHHHH
Confidence 444455555555444 56666666666653 3333322222221 155555555555555555433333
Q ss_pred HHHHhhccCCHHHHHHHHHH
Q 019734 275 HGLGLFTEGEMMKAVVYLEL 294 (336)
Q Consensus 275 lg~~~~~~~~~~~A~~~~~~ 294 (336)
. +...|++++++..|.+
T Consensus 98 ~---~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 98 N---TFYNNSTKERSSIFAE 114 (177)
T ss_dssp H---HHHHTCHHHHHHHHHH
T ss_pred H---HHHcCCHHHHHHHHHH
Confidence 2 3345666666666643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 336 | ||||
| d1klxa_ | 133 | a.118.18.1 (A:) Cysteine rich protein B (HcpB) {He | 2e-10 | |
| d1klxa_ | 133 | a.118.18.1 (A:) Cysteine rich protein B (HcpB) {He | 5e-09 | |
| d1klxa_ | 133 | a.118.18.1 (A:) Cysteine rich protein B (HcpB) {He | 4e-04 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 8e-10 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 7e-09 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 1e-07 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 6e-07 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 1e-05 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 0.002 | |
| d1fs1a1 | 41 | a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ | 6e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.002 |
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Length = 133 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Score = 55.9 bits (133), Expect = 2e-10
Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 6/131 (4%)
Query: 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQF 173
G V+K+L KA+ ++K + +K G+
Sbjct: 2 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFL 61
Query: 174 ------NLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 227
+ +A + +A L + G+GV N ++A + + +A
Sbjct: 62 GDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 121
Query: 228 AEGGYVRAMYN 238
G A
Sbjct: 122 CRLGSEDACGI 132
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Length = 133 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Score = 52.1 bits (123), Expect = 5e-09
Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 2/121 (1%)
Query: 154 EAAISLYRQAAVLGDPAGQFNLGISYLQ--EEAVKLLYQASIAGHVRAQYQLALCLHRGR 211
+ AI Y +A L + G +L + ++ + L +A L G+
Sbjct: 10 KKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGK 69
Query: 212 GVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKA 271
V +L++AA++Y +A G+G+ + +QA K ++A G A
Sbjct: 70 YVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDA 129
Query: 272 Q 272
Sbjct: 130 C 130
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Length = 133 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Score = 37.8 bits (86), Expect = 4e-04
Identities = 10/82 (12%), Positives = 25/82 (30%)
Query: 210 GRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG 269
G V +L++A ++Y++A E + + + + + C
Sbjct: 2 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFL 61
Query: 270 KAQLEHGLGLFTEGEMMKAVVY 291
E+G + +
Sbjct: 62 GDFYENGKYVKKDLRKAAQYYS 83
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 56.4 bits (134), Expect = 8e-10
Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 168 DPAGQFNLGISYLQ----EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARW 223
DP LG + +A K +A + L + ++G+GV+ NL++AA +
Sbjct: 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASF 60
Query: 224 YLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGL 277
Y +A + Y + Y G+G+ + +A ++ +A D + + G
Sbjct: 61 YAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGG 114
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 53.7 bits (127), Expect = 7e-09
Identities = 21/132 (15%), Positives = 41/132 (31%)
Query: 139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLLYQASIAGHVR 198
+V G ++ A + +A L + +G FNLG+ Y Q + V+ + + + + +
Sbjct: 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAK 63
Query: 199 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARK 258
A G + + A Y +A G +
Sbjct: 64 ACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVT 123
Query: 259 WMKRAADCGHGK 270
+ A K
Sbjct: 124 RDFKKAVEYFTK 135
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 49.5 bits (116), Expect = 1e-07
Identities = 11/89 (12%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 198 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQAR 257
+ L ++ + + +A +++ +A + +N + Y G+G+ + ++A
Sbjct: 3 KELVGLGAKSYKEK----DFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAA 58
Query: 258 KWMKRAADCGHGKAQLEHGLGLFTEGEMM 286
+ +A D + G ++ +
Sbjct: 59 SFYAKACDLNYSNGCHLLGNLYYSGQGVS 87
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 48.0 bits (112), Expect = 6e-07
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYN 238
+ + L + G GV N ++A + + + G A
Sbjct: 213 NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 255
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 43.7 bits (101), Expect = 1e-05
Identities = 18/77 (23%), Positives = 27/77 (35%)
Query: 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQ 255
+ H G G N +EA Y +A E +N GEG+ + +Q
Sbjct: 177 DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQ 236
Query: 256 ARKWMKRAADCGHGKAQ 272
A + K+ G A
Sbjct: 237 AIENFKKGCKLGAKGAC 253
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 36.8 bits (83), Expect = 0.002
Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 12/171 (7%)
Query: 118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD----KKEAAISLYRQAAVLGDPAGQF 173
K+ +A F K + G++Y++ + A S Y +A L G
Sbjct: 15 EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCH 74
Query: 174 NLGISYLQE--------EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 225
LG Y +A++ +A + L H G+ V + ++A ++
Sbjct: 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFT 134
Query: 226 RAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHG 276
+A + Y G G P ++A +A D G
Sbjct: 135 KACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAG 185
|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.6 bits (80), Expect = 6e-04
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 61 FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALR 96
+ SLP ++L I + LP+L S VCK W
Sbjct: 1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 36
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.002
Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 12/135 (8%)
Query: 119 KNLDKALDSFLKGAARGSTLAMV--DAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFN 174
+ D+A+ ++L+ + A+V + +Y+E + AI YR+A L P N
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276
Query: 175 LGISYLQ----EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE- 229
L + + EA A A L + N++EA R Y +A E
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE--QGNIEEAVRLYRKALEV 334
Query: 230 -GGYVRAMYNTSLCY 243
+ A N +
Sbjct: 335 FPEFAAAHSNLASVL 349
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 336 | |||
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.97 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 99.88 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.86 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 99.8 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.79 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.72 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.68 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.64 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.52 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.47 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.4 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.39 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.39 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.35 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.34 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.33 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.3 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.28 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.28 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.21 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.17 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.15 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.13 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.12 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.12 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.09 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.08 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.07 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.07 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.03 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.01 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.91 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.91 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.9 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.87 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.87 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.85 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.81 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.8 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.79 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.78 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.77 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.75 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.72 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.66 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.56 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.52 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.91 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.82 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.82 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.8 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.65 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.47 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.57 | |
| d1wfda_ | 93 | Hypothetical protein 1500032H18Rik {Mouse (Mus mus | 85.64 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 85.34 | |
| d1wfda_ | 93 | Hypothetical protein 1500032H18Rik {Mouse (Mus mus | 83.36 |
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.97 E-value=6.6e-30 Score=221.46 Aligned_cols=244 Identities=20% Similarity=0.247 Sum_probs=226.9
Q ss_pred hHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 019734 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAG 144 (336)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg 144 (336)
|..++..+...+..+++.+|+ .|++++.+.+++.+++.||.+|..|.|+++|+.+|..|+++++..+++.++..||
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~----~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~ 77 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAK----KYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHH----HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHH----HHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccc
Confidence 556677778888999999995 6666677778999999999999999999999999999999999999999999999
Q ss_pred HHHhcC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 019734 145 LMYWEM----DKKEAAISLYRQAAVLGDPAGQFNLGISYLQ--------EEAVKLLYQASIAGHVRAQYQLALCLHRGRG 212 (336)
Q Consensus 145 ~~~~~~----~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~--------~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g 212 (336)
.++..+ .+.+.|..+|+++++.+...++..||..+.. ..++.++.+..+.++..++++||.+|..|.+
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 157 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRG 157 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCC
Confidence 999764 6899999999999999999999999999987 8999999999999999999999999999998
Q ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCHHHH
Q 019734 213 VDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKA 288 (336)
Q Consensus 213 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~----~~~~~~A 288 (336)
...+...+..+++++++.+++.++++||.+|..|.|+.+|+++|+.||+++++.|++.++++||.+|.. ..|+++|
T Consensus 158 ~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A 237 (265)
T d1ouva_ 158 TPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQA 237 (265)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred cccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999986 4499999
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHh
Q 019734 289 VVYLELATRAGETAADHVKNVILQ 312 (336)
Q Consensus 289 ~~~~~~A~~~~~~~a~~~~~~~~~ 312 (336)
..||++|++.|+..|+..+..+..
T Consensus 238 ~~~~~kAa~~g~~~A~~~l~~l~~ 261 (265)
T d1ouva_ 238 IENFKKGCKLGAKGACDILKQLKI 261 (265)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTCCC
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999988876543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.94 E-value=2.7e-24 Score=185.70 Aligned_cols=226 Identities=16% Similarity=0.168 Sum_probs=208.5
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----MDKKEAAISLYRQAAVLGDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a~~~L 175 (336)
+|.+++.||..+.. .+|+++|++||++|++.|++.+++.||.+|.. ..++.+|+.++.++++.+++.++..|
T Consensus 1 ~p~~~~~lG~~~~~----~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYK----EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcc
Confidence 57899999999998 68999999999999999999999999999998 46999999999999999999999999
Q ss_pred HHHHHH--------HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Q 019734 176 GISYLQ--------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGE 247 (336)
Q Consensus 176 g~~~~~--------~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~ 247 (336)
|.++.. ++|+.+|+++++.+...+.+.+|..+..+.....+...++.++.+....++..+++.||.+|..+.
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~ 156 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGR 156 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCC
Confidence 999986 899999999999999999999999999988889999999999999999999999999999999998
Q ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcC--hhcHHH
Q 019734 248 GLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVKNVILQQLS--ATSRDR 321 (336)
Q Consensus 248 g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~--~~~~~~ 321 (336)
+...+...+..|++++++.+++.++++||.+|.. ..|+++|+.||+++++.|++.+...++.++.... +.+.++
T Consensus 157 ~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~ 236 (265)
T d1ouva_ 157 GTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQ 236 (265)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTT
T ss_pred CcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHH
Confidence 8899999999999999999999999999998887 6799999999999999999999999999987642 234556
Q ss_pred HHHHHHHh
Q 019734 322 AMLVVDSW 329 (336)
Q Consensus 322 a~~~~~~~ 329 (336)
|....++.
T Consensus 237 A~~~~~kA 244 (265)
T d1ouva_ 237 AIENFKKG 244 (265)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=4.2e-21 Score=171.86 Aligned_cols=252 Identities=17% Similarity=0.049 Sum_probs=153.1
Q ss_pred HHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019734 71 KIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYW 148 (336)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~ 148 (336)
.+...+..|++++|+..+.+.++..|+ ++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 78 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQ----CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhh
Confidence 445556777788887777777777665 67777778887777 47788888888877765 46777777777777
Q ss_pred cCCCHHHHHHHHHHHHHc--------------------------------------------------------------
Q 019734 149 EMDKKEAAISLYRQAAVL-------------------------------------------------------------- 166 (336)
Q Consensus 149 ~~~~~~~A~~~~~~a~~~-------------------------------------------------------------- 166 (336)
..|++++|+..+.++.+.
T Consensus 79 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 79 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHH
Confidence 777777777777655421
Q ss_pred --------CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCH----------------------------------H
Q 019734 167 --------GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHV----------------------------------R 198 (336)
Q Consensus 167 --------~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~----------------------------------~ 198 (336)
+++.++..+|.++.. ++|+.+++++++. +++ .
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 238 (388)
T d1w3ba_ 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHH
Confidence 123334444444433 4455555554432 344 4
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHH
Q 019734 199 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLE 274 (336)
Q Consensus 199 a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~ 274 (336)
.++.+|.++.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++... .....+..
T Consensus 239 ~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 310 (388)
T d1w3ba_ 239 VHGNLACVYYE----QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE----KGSVAEAEDCYNTALRLCPTHADSLNN 310 (388)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhhhccCCccchhhhH
Confidence 44455555544 45566666666665443 455666666666644 22666666666666553 34555666
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCCC
Q 019734 275 HGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 336 (336)
Q Consensus 275 lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (336)
+|.++...|++++|+.+|+++++..+..+.............++.++|+...++.++..|.+
T Consensus 311 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 372 (388)
T d1w3ba_ 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 67777777777777777777766543333322223333334556667777777777666653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=99.88 E-value=4.6e-22 Score=153.72 Aligned_cols=132 Identities=20% Similarity=0.156 Sum_probs=109.0
Q ss_pred CCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019734 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLLYQASI 193 (336)
Q Consensus 114 g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~A~~~~~ka~~ 193 (336)
|.||++|+++|+.||++|++.+++.+++.||... ..+.++|+.+ |+++++
T Consensus 2 G~gv~kd~~~A~~~~~kaa~~g~~~a~~~l~~~~--~~~~~~a~~~----------------------------~~~aa~ 51 (133)
T d1klxa_ 2 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNS--QINKQKLFQY----------------------------LSKACE 51 (133)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCTTHHHHHHTCT--TSCHHHHHHH----------------------------HHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHCCChhhhhhhcccc--ccCHHHHHHH----------------------------Hhhhhc
Confidence 6788999999999999999999999988887532 3455555555 455555
Q ss_pred cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 019734 194 AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL 273 (336)
Q Consensus 194 ~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~ 273 (336)
.+++.+++.||.+|..|.++.+|+.+|+.||+++++.+++.++++||.+|..|.|+++|..+|+.||++|++.|++.+++
T Consensus 52 ~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~~A~~ 131 (133)
T d1klxa_ 52 LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACG 131 (133)
T ss_dssp TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 56666666677777788888999999999999999999999999999999999999999999999999999999998886
Q ss_pred HH
Q 019734 274 EH 275 (336)
Q Consensus 274 ~l 275 (336)
.|
T Consensus 132 ~l 133 (133)
T d1klxa_ 132 IL 133 (133)
T ss_dssp HC
T ss_pred hC
Confidence 53
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=4.8e-20 Score=164.87 Aligned_cols=236 Identities=17% Similarity=0.103 Sum_probs=179.6
Q ss_pred hHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC---------
Q 019734 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--------- 135 (336)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--------- 135 (336)
+......+..++..|++++|+..+.+.++..|+ ++.+++.||.+|.. .+++++|+.+|.++....
T Consensus 33 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 106 (388)
T d1w3ba_ 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL--LAEAYSNLGNVYKE----RGQLQEAIEHYRHALRLKPDFIDGYIN 106 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHhhh----hcccccccccccccccccccccccccc
Confidence 445566666677889999999999988888776 78888888888877 567777766665543321
Q ss_pred -------------------------------------------------------------CHHHHHHHHHHHhcCCCHH
Q 019734 136 -------------------------------------------------------------STLAMVDAGLMYWEMDKKE 154 (336)
Q Consensus 136 -------------------------------------------------------------~~~a~~~lg~~~~~~~~~~ 154 (336)
++.++..+|.++...++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 186 (388)
T d1w3ba_ 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHH
Confidence 1233444444454455555
Q ss_pred HHHHHHHHHH----------------------------------Hc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc
Q 019734 155 AAISLYRQAA----------------------------------VL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA 194 (336)
Q Consensus 155 ~A~~~~~~a~----------------------------------~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~ 194 (336)
+|+.++.+++ .. .++..++.+|.++.. ++|+.+|+++++.
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 266 (388)
T d1w3ba_ 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5555555444 32 344555555555555 9999999999886
Q ss_pred --CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CC
Q 019734 195 --GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GH 268 (336)
Q Consensus 195 --~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~ 268 (336)
+++.+++.+|.++.. .+++.+|+.+|+++.. +.+...+..+|.++... +++++|+.+|+++++. ++
T Consensus 267 ~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~p~~ 338 (388)
T d1w3ba_ 267 QPHFPDAYCNLANALKE----KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ----GNIEEAVRLYRKALEVFPEF 338 (388)
T ss_dssp CSSCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT----TCHHHHHHHHHHHTTSCTTC
T ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC----CCHHHHHHHHHHHHHhCCCC
Confidence 689999999999998 8999999999999965 46889999999999753 3999999999999875 66
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHcC--cHHHHHHHHHHHhhc
Q 019734 269 GKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQL 314 (336)
Q Consensus 269 ~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~~~~~~~~~ 314 (336)
+.+++++|.+|...|++++|+.+|++|++.. ++++..+++.++..+
T Consensus 339 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~ 386 (388)
T d1w3ba_ 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 8899999999999999999999999999875 567777887776654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=5.3e-20 Score=162.44 Aligned_cols=217 Identities=13% Similarity=0.048 Sum_probs=186.4
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (336)
.+.++..++..|++++|+..+.+.++..|+ ++.+++.||.+|.. .+++++|+.+|.++++. .++.+++.+|.
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 95 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPK--HMEAWQYLGTTQAE----NEQELLAISALRRCLELKPDNQTALMALAV 95 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCChHHHHHHHHhhhccccccccccccccc
Confidence 478888999999999999999999998877 89999999999999 58999999999999987 58999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCH-----------HHHHH-------HHHHHHH---HHHHHHHHHHHHc----CCHHHH
Q 019734 146 MYWEMDKKEAAISLYRQAAVLGDP-----------AGQFN-------LGISYLQ---EEAVKLLYQASIA----GHVRAQ 200 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~-----------~a~~~-------Lg~~~~~---~~A~~~~~ka~~~----~~~~a~ 200 (336)
+|...|++++|+..|.+++..... ..... ++..... .+|+..|+++++. .++.++
T Consensus 96 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~ 175 (323)
T d1fcha_ 96 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 175 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred cccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccc
Confidence 999999999999999999854211 11111 1122221 8899999999875 367889
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 201 YQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHG 276 (336)
Q Consensus 201 ~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 276 (336)
+.+|.++.. .+++++|+.+|++++. +.++.+++.+|.+|... +++++|+.+|+++++. +++.++++||
T Consensus 176 ~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~a~~~lg 247 (323)
T d1fcha_ 176 CGLGVLFNL----SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG----NQSEEAVAAYRRALELQPGYIRSRYNLG 247 (323)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHH----HHHHhhhhcccccccccccccccchhhhhhccccc----ccchhHHHHHHHHHHHhhccHHHHHHHH
Confidence 999999998 8999999999999965 47899999999999763 3999999999999984 6799999999
Q ss_pred HHhhccCCHHHHHHHHHHHHHc
Q 019734 277 LGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 277 ~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
.+|...|++++|+.+|++|++.
T Consensus 248 ~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 248 ISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999985
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=99.80 E-value=1e-18 Score=134.52 Aligned_cols=120 Identities=18% Similarity=0.129 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHH
Q 019734 182 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMK 261 (336)
Q Consensus 182 ~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~ 261 (336)
++|+.||+++++.+++.++++||.. +..|.++|+.||+++++.+++.+++.||.+|..|.++++|.++|+.||+
T Consensus 10 ~~A~~~~~kaa~~g~~~a~~~l~~~------~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~ 83 (133)
T d1klxa_ 10 KKAIQYYVKACELNEMFGCLSLVSN------SQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYS 83 (133)
T ss_dssp HHHHHHHHHHHHTTCTTHHHHHHTC------TTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChhhhhhhccc------cccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHh
Confidence 5788888888888888888888743 3679999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHcCcHHHHHHH
Q 019734 262 RAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVK 307 (336)
Q Consensus 262 ~a~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~A~~~~~~~a~~~~ 307 (336)
++++.+++.++++||.+|.. ..|+++|..||++|++.|+++|+..+
T Consensus 84 ~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~~A~~~l 133 (133)
T d1klxa_ 84 KACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGIL 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC
T ss_pred hhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCHHHHHhC
Confidence 99999999999999999887 56999999999999999999998753
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.4e-17 Score=146.70 Aligned_cols=224 Identities=14% Similarity=-0.008 Sum_probs=176.8
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGI 177 (336)
Q Consensus 102 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~ 177 (336)
...+..|..+.. .|++++|+.+|+++++. .++.+++.+|.++...|++++|+.+|.++++. +++.+++.+|.
T Consensus 20 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 95 (323)
T d1fcha_ 20 PQPFEEGLRRLQ----EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAV 95 (323)
T ss_dssp SSHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccc
Confidence 345788999988 68999999999999997 58999999999999999999999999999865 78999999999
Q ss_pred HHHH----HHHHHHHHHHHHcCCH-----------HHHHHHHHHHhcCC--CCccCHHHHHHHHHHHHHC----CCHHHH
Q 019734 178 SYLQ----EEAVKLLYQASIAGHV-----------RAQYQLALCLHRGR--GVDFNLQEAARWYLRAAEG----GYVRAM 236 (336)
Q Consensus 178 ~~~~----~~A~~~~~ka~~~~~~-----------~a~~~lg~~~~~g~--g~~~~~~~A~~~~~~a~~~----~~~~a~ 236 (336)
+|.. ++|+..|++++..... .....++....... ...+.+.+|+..|++++.. .++.++
T Consensus 96 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~ 175 (323)
T d1fcha_ 96 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 175 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred cccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccc
Confidence 9988 9999999999864311 11111111111000 0135788899999999764 367889
Q ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC--cHHHHHHHHHHHh
Q 019734 237 YNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQ 312 (336)
Q Consensus 237 ~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~~~~~~~ 312 (336)
..+|.++... +++++|+.+|++++.. +++.+++++|.+|...|++++|+.+|+++++.. ++.+...++.++.
T Consensus 176 ~~l~~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 251 (323)
T d1fcha_ 176 CGLGVLFNLS----GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 251 (323)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHH----HHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 9999999763 3999999999999875 678899999999999999999999999999864 5666666666655
Q ss_pred hcChhcHHHHHHHHHHhhcCCCC
Q 019734 313 QLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
. .++.++|+...++.++..|.
T Consensus 252 ~--~g~~~~A~~~~~~al~l~p~ 272 (323)
T d1fcha_ 252 N--LGAHREAVEHFLEALNMQRK 272 (323)
T ss_dssp H--HTCHHHHHHHHHHHHHHHHT
T ss_pred H--CCCHHHHHHHHHHHHHhCCc
Confidence 5 56678888888887765543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=1.5e-16 Score=135.44 Aligned_cols=215 Identities=12% Similarity=-0.020 Sum_probs=152.2
Q ss_pred hhHHhhhHHHHHHHHHhC--CCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHH
Q 019734 79 PQLRAASLVCKSWNDALR--PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKE 154 (336)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~--~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~ 154 (336)
.+.+.+...+...+.... +...+.+++.+|.+|.. .|++++|+.+|++|+.. +++.+++.+|.+|...|+++
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~----~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~ 88 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 88 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHH
Confidence 334444444444444322 11367899999999999 68999999999999987 68999999999999999999
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 019734 155 AAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 226 (336)
Q Consensus 155 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~ 226 (336)
+|+..|+++++. +++.+++++|.+|.. ++|+.+|+++++. .+..+...++.++.. .+....+......
T Consensus 89 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 164 (259)
T d1xnfa_ 89 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK----LDEKQAKEVLKQH 164 (259)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HCHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHH----hhhHHHHHHHHHH
Confidence 999999999865 789999999999988 9999999999876 466777777776665 2333333333343
Q ss_pred HHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH
Q 019734 227 AAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD--CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 301 (336)
Q Consensus 227 a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~ 301 (336)
............+...+..........+.+...+..+.. .....++++||.+|...|++++|+.+|++|+...+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 165 FEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp HHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred hhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 333332222233333332212112234444444444433 234667899999999999999999999999987654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.9e-15 Score=133.11 Aligned_cols=214 Identities=7% Similarity=-0.123 Sum_probs=159.2
Q ss_pred cCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC
Q 019734 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDK 152 (336)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~ 152 (336)
....+.+++|..++.+.++..|+ +..+++.+|.++... .+++++|+.+|++++.. .+..+++++|.++...|+
T Consensus 53 ~~~~e~~~~Al~~~~~ai~lnP~--~~~a~~~r~~~l~~l---~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~ 127 (315)
T d2h6fa1 53 LQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSL---QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD 127 (315)
T ss_dssp HHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHhCCchHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHh---CcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhcc
Confidence 34677888888888888888777 888888888887762 25788888888888876 578888888888888888
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC--CCccCHHHHHH
Q 019734 153 KEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGR--GVDFNLQEAAR 222 (336)
Q Consensus 153 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~--g~~~~~~~A~~ 222 (336)
+++|+.+|.++++. .+..+++++|.++.. ++|+.+|+++++. .+..+++++|.++.... ...+++.+|+.
T Consensus 128 ~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~ 207 (315)
T d2h6fa1 128 PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQ 207 (315)
T ss_dssp CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHH
Confidence 88888888888765 678888888888887 8888888888775 57888888888876422 23455778888
Q ss_pred HHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CCHHHHHHHHHHhhc--cCCHHHHHHHHHH
Q 019734 223 WYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GHGKAQLEHGLGLFT--EGEMMKAVVYLEL 294 (336)
Q Consensus 223 ~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~--~~~~~~A~~~~~~ 294 (336)
.+.+++. +.+..++++++.++.. . ...++...++++++. ..+.+...++.+|.. .++.+.+...+++
T Consensus 208 ~~~~al~~~P~~~~~~~~l~~ll~~-~----~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~k 282 (315)
T d2h6fa1 208 YTLEMIKLVPHNESAWNYLKGILQD-R----GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 282 (315)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHTT-T----CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHh-c----ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 8888854 4678888888888743 2 345666777777653 335556666666644 3555666777777
Q ss_pred HHHc
Q 019734 295 ATRA 298 (336)
Q Consensus 295 A~~~ 298 (336)
|++.
T Consensus 283 a~~l 286 (315)
T d2h6fa1 283 ALEL 286 (315)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=8.7e-15 Score=128.81 Aligned_cols=202 Identities=5% Similarity=-0.118 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD-KKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
.+++..+|.++..+ +.+++|+..|++|++. .+..+++.+|.++...+ ++++|+.++.++++. ++..+++++
T Consensus 43 ~~a~~~~~~~~~~~----e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~ 118 (315)
T d2h6fa1 43 RDVYDYFRAVLQRD----ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 118 (315)
T ss_dssp HHHHHHHHHHHHHT----CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhC----CchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 45566778888883 7899999999999998 58999999999998865 699999999999865 799999999
Q ss_pred HHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCC
Q 019734 176 GISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGE 247 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~ 247 (336)
|.++.. ++|+.+|.++++. .+..+++++|.++.. .+++++|+.+|+++++ +.+..+++++|.++....
T Consensus 119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~----~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~ 194 (315)
T d2h6fa1 119 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 194 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcc
Confidence 999998 9999999999886 589999999999998 8999999999999976 478999999999986543
Q ss_pred C--CcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC----cHHHHHHHHHHH
Q 019734 248 G--LPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG----ETAADHVKNVIL 311 (336)
Q Consensus 248 g--~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~----~~~a~~~~~~~~ 311 (336)
. ....+++|+..+.+++.. ++..+++++|.++...+ .+++...+++++... ++.+...+..++
T Consensus 195 ~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 195 GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred ccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 2 244689999999999985 67889999999766544 688888898887653 344444444333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=2.4e-13 Score=115.05 Aligned_cols=192 Identities=10% Similarity=-0.065 Sum_probs=141.0
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
.....+..++..|++++|+..+.+.++..|+ ++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++++|
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~--~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg 112 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQ----AGNFDAAYEAFDSVLELDPTYNYAHLNRG 112 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC--CHHHHhhhchHHHH----HHHHHHhhhhhhHHHHHHhhhhhhHHHHH
Confidence 3466777788999999999999999999877 89999999999999 69999999999999987 5789999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHH
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQ 218 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~ 218 (336)
.+|...|++++|+..|+++++. .+......++.++.. ..+..................+...+.......+...
T Consensus 113 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 113 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLME 192 (259)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999866 567777777776666 3333333333333322222233333322111122344
Q ss_pred HHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC
Q 019734 219 EAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 268 (336)
Q Consensus 219 ~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~ 268 (336)
.+...+..+. ......++++||.+|... +++++|+.+|++++...+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSL----GDLDSATALFKLAVANNV 240 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHcCC
Confidence 4444443332 345677899999999753 399999999999998643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=5.3e-12 Score=110.24 Aligned_cols=215 Identities=12% Similarity=0.027 Sum_probs=146.3
Q ss_pred HHHHhcCCChhHHhhhHHHHHHHHHhCCCCC---HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC----HH
Q 019734 70 NKIAASFTLPQLRAASLVCKSWNDALRPLRE---AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TL 138 (336)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~~----~~ 138 (336)
.++...+..|++++|+.++.+.++..++.+. ..++..+|.+|.. .+++++|+.+|++++.. ++ ..
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 92 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC----KGELTRSLALMQQTEQMARQHDVWHYALW 92 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 3455567899999999999999988776332 4688899999998 68999999999999864 22 45
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc----C------CHHHHHHHHHHHHH----HHHHHHHHHHHHc-------CCH
Q 019734 139 AMVDAGLMYWEMDKKEAAISLYRQAAVL----G------DPAGQFNLGISYLQ----EEAVKLLYQASIA-------GHV 197 (336)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~------~~~a~~~Lg~~~~~----~~A~~~~~ka~~~-------~~~ 197 (336)
++..++.++...+++..|...+.+++.. . .......+|.++.. +.+..+|.++... ...
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 172 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence 6788999999999999999999998742 1 23456778888877 7777777777653 134
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC----C-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-
Q 019734 198 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG- 267 (336)
Q Consensus 198 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~----~-----~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~- 267 (336)
.+...++.++.. .+++.++...+.++... + ...++..++.++.... ++++|..+++++....
T Consensus 173 ~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~a~~~~~~~~~~~~ 244 (366)
T d1hz4a_ 173 QCLAMLIQCSLA----RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG----DKAAAANWLRHTAKPEF 244 (366)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHhcc
Confidence 455666666655 56666666666665331 1 1233444555554322 6666666666665421
Q ss_pred -----CHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 019734 268 -----HGKAQLEHGLGLFTEGEMMKAVVYLELAT 296 (336)
Q Consensus 268 -----~~~a~~~lg~~~~~~~~~~~A~~~~~~A~ 296 (336)
......++|.++...|++++|..++++++
T Consensus 245 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 278 (366)
T d1hz4a_ 245 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 278 (366)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12334556666666666666666666665
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.40 E-value=3.5e-13 Score=118.97 Aligned_cols=216 Identities=6% Similarity=-0.153 Sum_probs=164.1
Q ss_pred ChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHH-HHHHHHHhcCCCHH
Q 019734 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAM-VDAGLMYWEMDKKE 154 (336)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~-~~lg~~~~~~~~~~ 154 (336)
.+.+.+|...+...++..|+ ++.+++.+|.++..- + ..+.++|+.++.+++.. .+..++ ..+|.++...+.++
T Consensus 86 ~~~~~~al~~~~~~l~~~pk--~~~~~~~~~~~~~~~-~-~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 86 AALVKAELGFLESCLRVNPK--SYGTWHHRCWLLSRL-P-EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTC-S-SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHhCCC--cHHHHHHhhHHHHHh-c-cccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccH
Confidence 35677888888888888777 889999999887662 1 45789999999999987 356665 57788998899999
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 019734 155 AAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLR 226 (336)
Q Consensus 155 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~ 226 (336)
+|+.+++++++. .+..+++++|.++.. ++|+..++++.+.. .......+.. .+..+++...|.+
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~--------l~~~~~a~~~~~~ 233 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--------TDPNDQSAWFYHR 233 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH--------HCSSCSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHH--------hcchhHHHHHHHH
Confidence 999999999865 789999999999988 45555555444332 1122222211 2334568888888
Q ss_pred HHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHH
Q 019734 227 AAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 302 (336)
Q Consensus 227 a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 302 (336)
++.. ....++..+|.++.. .+++.+|+..+.+++... ...+++.+|.+|...|++++|+.+|+++++.++..
T Consensus 234 ~l~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~ 309 (334)
T d1dcea1 234 WLLGRAEPLFRCELSVEKSTV----LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 309 (334)
T ss_dssp HHHSCCCCSSSCCCCHHHHHH----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCcchhhHHHHHHHHHHH----HhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc
Confidence 8654 456667777777754 348999999999998764 46778999999999999999999999999998876
Q ss_pred HHHHHHH
Q 019734 303 ADHVKNV 309 (336)
Q Consensus 303 a~~~~~~ 309 (336)
+.++...
T Consensus 310 ~~y~~~L 316 (334)
T d1dcea1 310 AAYLDDL 316 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.39 E-value=5e-11 Score=102.89 Aligned_cols=185 Identities=16% Similarity=0.094 Sum_probs=132.1
Q ss_pred HHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC---
Q 019734 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD--- 168 (336)
Q Consensus 104 ~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~--- 168 (336)
+...|.+|.. .+++++|+.+|++|+.. ++ ..++.++|.+|...|++++|+.+|+++++. ++
T Consensus 40 y~~aa~~y~~----~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 115 (290)
T d1qqea_ 40 CVQAATIYRL----RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (290)
T ss_dssp HHHHHHHHHH----TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchh
Confidence 3445777777 58999999999999874 33 357889999999999999999999998753 33
Q ss_pred -HHHHHHHHHHHHH-----HHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC--C
Q 019734 169 -PAGQFNLGISYLQ-----EEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--Y 232 (336)
Q Consensus 169 -~~a~~~Lg~~~~~-----~~A~~~~~ka~~~----~~----~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~--~ 232 (336)
..++..+|.+|.. ++|+.+|++|++. +. ..++.++|.+|.. .+++.+|+.+|++++... .
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~----~g~y~~A~~~~~~~~~~~~~~ 191 (290)
T d1qqea_ 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEASDIYSKLIKSSMGN 191 (290)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH----cChHHHHHHHHHHHHHhCccc
Confidence 4567788888754 8899999888753 22 3457888888888 788999999998887642 1
Q ss_pred -------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--H-----HHHHHHHHHhhc--cCCHHHHHHHHHHHH
Q 019734 233 -------VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--G-----KAQLEHGLGLFT--EGEMMKAVVYLELAT 296 (336)
Q Consensus 233 -------~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~--~-----~a~~~lg~~~~~--~~~~~~A~~~~~~A~ 296 (336)
...+..+|.++... .++..|...++++.+... . .....|..++.. .+.+++|+..|.++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~l~~----~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 192 RLSQWSLKDYFLKKGLCQLAA----TDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp TTTGGGHHHHHHHHHHHHHHT----TCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred hhhhhhHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 23456677777542 388888888888876532 1 123455554444 346888888887776
Q ss_pred HcCc
Q 019734 297 RAGE 300 (336)
Q Consensus 297 ~~~~ 300 (336)
+.++
T Consensus 268 ~lD~ 271 (290)
T d1qqea_ 268 RLDK 271 (290)
T ss_dssp CCCH
T ss_pred hcCH
Confidence 6653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=3.8e-13 Score=118.75 Aligned_cols=241 Identities=5% Similarity=-0.147 Sum_probs=185.0
Q ss_pred HHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhc-C-CC----CcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC-
Q 019734 81 LRAASLVCKSWNDALRPLREAMVLLRWGKRFKH-G-RG----VRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD- 151 (336)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~-g-~g----~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~- 151 (336)
.++|..++.+.++..|+ +..+|...+.++.. + .+ ..+++++|+.+|++++.. .++.+++.+|.++...+
T Consensus 45 ~~~al~~~~~~l~~~P~--~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 45 DESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp SHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred cHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcc
Confidence 37899999999999888 78888777766543 1 01 134588999999999987 48999999999887765
Q ss_pred -CHHHHHHHHHHHHHc--CCHHHH-HHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHH
Q 019734 152 -KKEAAISLYRQAAVL--GDPAGQ-FNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAA 221 (336)
Q Consensus 152 -~~~~A~~~~~~a~~~--~~~~a~-~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~ 221 (336)
+.++|+..+.++++. .+..++ +.+|.++.. ++|+.+++++++. .+..+++++|.++.. .+++++|+
T Consensus 123 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~----~~~~~~A~ 198 (334)
T d1dcea1 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ----LHPQPDSG 198 (334)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH----HSCCCCSS
T ss_pred ccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hcCHHHHH
Confidence 689999999999866 567776 456677765 9999999999875 689999999999987 66777776
Q ss_pred HHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 222 RWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 222 ~~~~~a~~~~--~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
..++++.... .......+... + ..+++...|.+++.. .....+..+|.++...+++.+|+..+.+++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~l---~-----~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 270 (334)
T d1dcea1 199 PQGRLPENVLLKELELVQNAFFT---D-----PNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEP 270 (334)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH---C-----SSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHhHHhHHHHHHHHHHHHHh---c-----chhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6666554332 12222222211 1 445688889998875 4456678889999999999999999999999
Q ss_pred cCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 298 AGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 298 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
..+..+.............++.++|....++.++..|.
T Consensus 271 ~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~ 308 (334)
T d1dcea1 271 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 308 (334)
T ss_dssp TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc
Confidence 88776666666666667888999999999999988874
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.6e-11 Score=99.68 Aligned_cols=87 Identities=23% Similarity=0.239 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISY 179 (336)
Q Consensus 102 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~ 179 (336)
..+|..|..+.. .+|+++|+..|+++ ...++.+++++|.+|...|++++|+.+|++|++. .++.+++++|.+|
T Consensus 6 ~~l~~~g~~~~~----~~d~~~Al~~~~~i-~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~ 80 (192)
T d1hh8a_ 6 ISLWNEGVLAAD----KKDWKGALDAFSAV-QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 80 (192)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHTS-SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 455667777777 57888888888764 3356778888888888888888888888888754 5677777777777
Q ss_pred HH----HHHHHHHHHHHH
Q 019734 180 LQ----EEAVKLLYQASI 193 (336)
Q Consensus 180 ~~----~~A~~~~~ka~~ 193 (336)
.. ++|+..|++|+.
T Consensus 81 ~~~g~~~~A~~~~~kAl~ 98 (192)
T d1hh8a_ 81 YQTEKYDLAIKDLKEALI 98 (192)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHH
Confidence 66 666666666654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.34 E-value=5.5e-11 Score=102.64 Aligned_cols=195 Identities=13% Similarity=0.099 Sum_probs=143.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHH----HHHHH
Q 019734 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQ----EEAVK 186 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~----~~A~~ 186 (336)
.++++|..+|.+| |.+|...+++++|+..|.+|++. ++ ..++.++|.+|.. ++|+.
T Consensus 31 ~~~~~Aa~~y~~a------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~ 98 (290)
T d1qqea_ 31 YKFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98 (290)
T ss_dssp HHHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHH------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4578888888876 67898999999999999999864 33 3578999999988 99999
Q ss_pred HHHHHHHc----CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCc
Q 019734 187 LLYQASIA----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLP 250 (336)
Q Consensus 187 ~~~ka~~~----~~----~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~g~~ 250 (336)
+|+++++. +. ..++.++|.+|... .+++++|+.+|+++++. +. ..++.++|.+|....
T Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g--- 172 (290)
T d1qqea_ 99 SLENAIQIFTHRGQFRRGANFKFELGEILEND---LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG--- 172 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHhhHHhhhcccchhHHHHHHHHHHhHhhH---HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcC---
Confidence 99999763 33 56788999988641 58999999999999753 22 456889999997633
Q ss_pred ccHHHHHHHHHHHHHcCC---------HHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH--HH--HHHHHH---HHhhc
Q 019734 251 LSHRQARKWMKRAADCGH---------GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET--AA--DHVKNV---ILQQL 314 (336)
Q Consensus 251 ~~~~~A~~~~~~a~~~~~---------~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~--~a--~~~~~~---~~~~~ 314 (336)
++++|+.+|++++.... ...++++|.++...++++.|...++++.+..+. ++ ...+.. .....
T Consensus 173 -~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~ 251 (290)
T d1qqea_ 173 -QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG 251 (290)
T ss_dssp -CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTT
T ss_pred -hHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhc
Confidence 99999999999987421 234578899999999999999999999876532 21 111222 22333
Q ss_pred ChhcHHHHHHHHHHhhcC
Q 019734 315 SATSRDRAMLVVDSWRAM 332 (336)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~ 332 (336)
.....+++....+++.++
T Consensus 252 d~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 252 DSEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp CTTTHHHHHHHHTTSSCC
T ss_pred CHHHHHHHHHHHHHHhhc
Confidence 445566666655554444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=6.5e-13 Score=123.94 Aligned_cols=213 Identities=9% Similarity=-0.014 Sum_probs=128.8
Q ss_pred hhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhcCCCHHHHHHHH
Q 019734 83 AASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS--TLAMVDAGLMYWEMDKKEAAISLY 160 (336)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~--~~a~~~lg~~~~~~~~~~~A~~~~ 160 (336)
+|...+++..+..|+ .+++++.+|.+|.. .+++++| |++++..+. +.+....+.+. ...+..++..+
T Consensus 4 eA~q~~~qA~~l~p~--~a~a~~~la~~~~~----~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~ 72 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD--MTDSKLGPAEVWTS----RQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTL 72 (497)
T ss_dssp HHHHHHHHHHHHHGG--GTCSSSCSSSSHHH----HHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--CHHHHhhHHHHHHH----HchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHH
Confidence 466666777776666 67778888888887 5677766 788876542 22322222222 11245677788
Q ss_pred HHHHHcC----CHH-HHHHHHHHHHH----HHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 019734 161 RQAAVLG----DPA-GQFNLGISYLQ----EEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 229 (336)
Q Consensus 161 ~~a~~~~----~~~-a~~~Lg~~~~~----~~A~~~~~ka~~--~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~ 229 (336)
++..... ... ....++.++.. +.|+..|+++.+ ..+..++.++|..+.. .++..+|+..+++++.
T Consensus 73 r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~ 148 (497)
T d1ya0a1 73 QGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNK----QTHTSAIVKPQSSSCS 148 (497)
T ss_dssp HHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------------CCHHHH
T ss_pred HHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHh----CCCHHHHHHHHHHHhC
Confidence 8777542 111 11222333321 555555555543 3577888999999987 7899999999999988
Q ss_pred CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc--CcHHHHH
Q 019734 230 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADH 305 (336)
Q Consensus 230 ~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~ 305 (336)
.....++.+||.++.... ++++|+.||++|+.. +++.++++||.++...|++.+|+.+|.+|+.. ..+.|..
T Consensus 149 ~~~~~~~~~LG~l~~~~~----~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~ 224 (497)
T d1ya0a1 149 YICQHCLVHLGDIARYRN----QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAST 224 (497)
T ss_dssp HHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHcc----cHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHH
Confidence 877789999999997643 999999999999885 66888999999999999999999999999975 5678888
Q ss_pred HHHHHHhhc
Q 019734 306 VKNVILQQL 314 (336)
Q Consensus 306 ~~~~~~~~~ 314 (336)
++..++...
T Consensus 225 nL~~~~~~~ 233 (497)
T d1ya0a1 225 NLQKALSKA 233 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 887766543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=4.7e-11 Score=96.77 Aligned_cols=136 Identities=15% Similarity=0.034 Sum_probs=92.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC
Q 019734 139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRG 212 (336)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g 212 (336)
.+++.|..+...|++++|+..|.++ ...++.+++++|.+|.. ++|+.+|++|++. .++.+++++|.+|..
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i-~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~--- 82 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAV-QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ--- 82 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS-SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh---
Confidence 4456788899999999999999874 44567788888888877 7777777777654 467777777777766
Q ss_pred CccCHHHHHHHHHHHHHCC--CHH-HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCHHHHH
Q 019734 213 VDFNLQEAARWYLRAAEGG--YVR-AMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAV 289 (336)
Q Consensus 213 ~~~~~~~A~~~~~~a~~~~--~~~-a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~A~ 289 (336)
.+++++|+..|++|+... +.. .+..+|..+ .......++++|.++...|++++|.
T Consensus 83 -~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~---------------------~~~~~e~~~n~a~~~~~~~~~~~A~ 140 (192)
T d1hh8a_ 83 -TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF---------------------KLFACEVLYNIAFMYAKKEEWKKAE 140 (192)
T ss_dssp -TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC---------------------EEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -hccHHHHHHHHHHHHHhCccCchHHHHHhhhhc---------------------ccchHHHHHHHHHHHHHCCCHHHHH
Confidence 677777777777775421 100 000000000 0012356789999999999999999
Q ss_pred HHHHHHHHcCc
Q 019734 290 VYLELATRAGE 300 (336)
Q Consensus 290 ~~~~~A~~~~~ 300 (336)
..|++|+....
T Consensus 141 ~~l~~A~~~~~ 151 (192)
T d1hh8a_ 141 EQLALATSMKS 151 (192)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHhcCC
Confidence 99999987643
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=3.2e-11 Score=89.54 Aligned_cols=107 Identities=9% Similarity=0.004 Sum_probs=89.0
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
++..++..++..|++++|+..+.+.++..|. ++.+++.+|.+|.. .+++++|+..|++++.. +++.+++++|
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~--~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~g 78 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH--NHVLYSNRSAAYAK----KGDYQKAYEDGCKTVDLKPDWGKGYSRKA 78 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--chhhhhcccccccc----cccccccchhhhhHHHhccchhhHHHHHH
Confidence 4566777888888888888888888888777 78888888888888 58888899999888876 5788888889
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISY 179 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~ 179 (336)
.++...|++++|+..|+++++. +++.++..++.+.
T Consensus 79 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 79 AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 8888888999998888888855 6788888877764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=2.2e-10 Score=99.63 Aligned_cols=217 Identities=12% Similarity=-0.011 Sum_probs=171.2
Q ss_pred HHHHhcCCChhHHhhhHHHHHHHHHhCCCCC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----C------
Q 019734 70 NKIAASFTLPQLRAASLVCKSWNDALRPLRE----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G------ 135 (336)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~------ 135 (336)
..+..++..|++++|...+....+..+..++ ..++..+|.++.. .+++..|...+.+++.. .
T Consensus 56 ~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~al~~~~~~~~~~~~~ 131 (366)
T d1hz4a_ 56 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA----QGFLQTAWETQEKAFQLINEQHLEQLPM 131 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHhcccchhhH
Confidence 3455667889999999999988887655433 4577788888888 68999999999998763 1
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHH----HHHHHHHHHHHHc----C-----
Q 019734 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL-------GDPAGQFNLGISYLQ----EEAVKLLYQASIA----G----- 195 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~----~----- 195 (336)
.......+|.++...|+++.+..++.++... ....++..++.++.. .++...+.++... +
T Consensus 132 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~ 211 (366)
T d1hz4a_ 132 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 211 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCch
Confidence 2356778999999999999999999999854 235667777777776 8888888877652 1
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc---
Q 019734 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG------YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--- 266 (336)
Q Consensus 196 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--- 266 (336)
...++..+|.++.. .+++++|..+++++.... ....+.++|.+|.... ++++|..++++++..
T Consensus 212 ~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~ 283 (366)
T d1hz4a_ 212 ISNANKVRVIYWQM----TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG----EFEPAEIVLEELNENARS 283 (366)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHhh
Confidence 23466778888887 789999999999986432 3566788999997633 999999999999752
Q ss_pred -C----CHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 267 -G----HGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 267 -~----~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
+ ...++..+|.+|...|++++|..+|++|+..
T Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 284 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2 2457799999999999999999999999875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=2.3e-10 Score=89.47 Aligned_cols=108 Identities=9% Similarity=0.007 Sum_probs=83.6
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
.+..++...+..|++++|+..+.+.++..|+ ++.+++.+|.+|.. .+++++|+..|+++++. .+..+++.+|
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~----~~~~~~A~~~~~kal~~~p~~~~a~~~~g 85 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLR----TECYGYALGDATRAIELDKKYIKGYYRRA 85 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccchh--hhhhhhhhHHHHHh----ccccchHHHHHHHHHHHcccchHHHHHHH
Confidence 4566777778888888888888888887766 78888888888888 47888888888888776 4778888888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYL 180 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~ 180 (336)
.++...|++++|+..|++++.. .++.++..++.+..
T Consensus 86 ~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~ 123 (159)
T d1a17a_ 86 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 123 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 8888888888888888888754 67777777766654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=7.2e-10 Score=86.61 Aligned_cols=118 Identities=17% Similarity=0.064 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHH
Q 019734 197 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQ 272 (336)
Q Consensus 197 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~ 272 (336)
++.+...|..|.. .+++++|+.+|+++++ +.++.+++++|.+|.... ++++|+..|+++++. .+..++
T Consensus 10 a~~l~~~gn~~~~----~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~----~~~~A~~~~~kal~~~p~~~~a~ 81 (159)
T d1a17a_ 10 AEELKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE----CYGYALGDATRAIELDKKYIKGY 81 (159)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhcc----ccchHHHHHHHHHHHcccchHHH
Confidence 3456677888887 8999999999999965 578999999999997743 999999999999875 668899
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHcC--cHHHHHHHHHHHhhcChhcHHHH
Q 019734 273 LEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQLSATSRDRA 322 (336)
Q Consensus 273 ~~lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~~~~~~~~~~~~~~~~a 322 (336)
+++|.++...|++++|+.+|++++... ++.+...+..+...+.....+++
T Consensus 82 ~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a 133 (159)
T d1a17a_ 82 YRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA 133 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999874 45665555555444433333333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=6.6e-10 Score=82.22 Aligned_cols=72 Identities=13% Similarity=0.030 Sum_probs=39.7
Q ss_pred HHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 019734 106 RWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ 181 (336)
Q Consensus 106 ~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 181 (336)
..|..+.. .+++++|+.+|+++++. .++.+++.+|.+|...|++++|+..|.++++. +++.+++++|.++..
T Consensus 8 ~~g~~~~~----~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 8 EKGNKALS----VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence 34554444 35666666666666554 35556666666666666666666666665532 444444444444444
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=1.1e-10 Score=94.55 Aligned_cols=95 Identities=22% Similarity=0.094 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHH
Q 019734 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKA 271 (336)
Q Consensus 196 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a 271 (336)
.+..+...|..|.. .+++++|+.+|++|++ +.++.+++++|.+|.... ++++|+.+|++|+.. .++.+
T Consensus 3 ~a~~l~~~Gn~~~~----~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~----~~~~Ai~~~~~al~l~p~~~~a 74 (201)
T d2c2la1 3 SAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ----QPEQALADCRRALELDGQSVKA 74 (201)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHTTSCTTCHHH
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhh----hhhhhhHHHHHHHHhCCCcHHH
Confidence 45566777888877 7888888888888864 467888888888886533 888888888888774 56778
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 272 QLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 272 ~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
++++|.+|...|++++|+.+|++|+..
T Consensus 75 ~~~lg~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 75 HFFLGQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888888888888888888888888764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.12 E-value=4e-10 Score=91.06 Aligned_cols=90 Identities=24% Similarity=0.283 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
.+..+...|..|+. .|++++|+.+|++|+.. .++.+++++|.+|...|++++|+.+|.+|++. +++.+++++
T Consensus 3 ~a~~l~~~Gn~~~~----~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 3 SAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 55666677777777 57777777777777765 46777777777777777777777777777653 556666666
Q ss_pred HHHHHH----HHHHHHHHHHHH
Q 019734 176 GISYLQ----EEAVKLLYQASI 193 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~ 193 (336)
|.+|.. ++|+.+|+++++
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 666665 555555555543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=3.6e-10 Score=84.31 Aligned_cols=108 Identities=11% Similarity=0.078 Sum_probs=86.5
Q ss_pred HHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC----HHHHHHH
Q 019734 202 QLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH----GKAQLEH 275 (336)
Q Consensus 202 ~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~----~~a~~~l 275 (336)
+|...+.. .+++++|.+.|++++. +.++.+++++|.++..-. ...++++|+..|++++..++ ..++++|
T Consensus 4 ~l~n~~~~----~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~-~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~L 78 (122)
T d1nzna_ 4 AVLNELVS----VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTR-YNDDIRKGIVLLEELLPKGSKEEQRDYVFYL 78 (122)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSS-SHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHhcC----HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 34555555 6899999999999976 678999999999996422 24478899999999987653 3478999
Q ss_pred HHHhhccCCHHHHHHHHHHHHHcC--cHHHHHHHHHHHhhc
Q 019734 276 GLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQL 314 (336)
Q Consensus 276 g~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~~~~~~~~~ 314 (336)
|.+|...|++++|+.+|+++++.. +..|...+..+...+
T Consensus 79 g~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 79 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119 (122)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999875 467777777666543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.5e-11 Score=114.48 Aligned_cols=199 Identities=5% Similarity=-0.117 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH--HHHHHHHHHHHHcC-
Q 019734 123 KALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYLQ--EEAVKLLYQASIAG- 195 (336)
Q Consensus 123 ~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~--~~A~~~~~ka~~~~- 195 (336)
+|+++|++|+.+ +.+++++++|.++...+++++| |++++..+ .+.++...+.+... ..+++.+++..+..
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~~~ 80 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRA 80 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 799999999976 6788999999999999999887 88887553 33444333333322 67788888777532
Q ss_pred ---CHH-HHHHHHHHHhcCCCCccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH
Q 019734 196 ---HVR-AQYQLALCLHRGRGVDFNLQEAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG 269 (336)
Q Consensus 196 ---~~~-a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~ 269 (336)
... ....++.++.. .+.+..|+..|+++. ++.+..++.++|..+... ++..+|...+++++.....
T Consensus 81 ~~~~~~~~~~~~~~l~~a----~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~~~ 152 (497)
T d1ya0a1 81 NPNRSEVQANLSLFLEAA----SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQ----THTSAIVKPQSSSCSYICQ 152 (497)
T ss_dssp CTTTTHHHHHHHHHHHHH----HHHHHHHHHHHTC-----------------------------------CCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhC----CCHHHHHHHHHHHhCCCHH
Confidence 222 22233444433 466788888777764 356788899999999642 3899999999999988777
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHcCc--HHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
.++.+||.++...+++++|..||++|+...+ ..+...++.+... .++..+|.....+.+...|
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~--~~~~~~A~~~y~ral~~~~ 217 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS--KGDHLTTIFYYCRSIAVKF 217 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH--TTCHHHHHHHHHHHHSSSB
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCC
Confidence 8899999999999999999999999998754 4566666666554 4566667776666655443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.08 E-value=9.4e-10 Score=80.69 Aligned_cols=83 Identities=24% Similarity=0.150 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISY 179 (336)
Q Consensus 104 ~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~ 179 (336)
.+.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++...+++++|+.+|+++++. .++.+++.||.+|
T Consensus 19 ~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y 94 (112)
T d1hxia_ 19 PMEEGLSMLK----LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 94 (112)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHH
Confidence 3455666655 45666666666666655 35666666666666666666666666666533 4455555555555
Q ss_pred HH----HHHHHHHHH
Q 019734 180 LQ----EEAVKLLYQ 190 (336)
Q Consensus 180 ~~----~~A~~~~~k 190 (336)
.. ++|+++|++
T Consensus 95 ~~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 95 TNEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHH
Confidence 44 444444444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=1.1e-09 Score=82.38 Aligned_cols=107 Identities=13% Similarity=0.211 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG 176 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 176 (336)
+..+-.+|..|.. .+++++|+.+|+++++. .++.+++++|.+|...|++++|+..|.++++. .++.++..+|
T Consensus 4 a~~~k~~G~~~~~----~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a 79 (128)
T d1elra_ 4 ALKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79 (128)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3456678888888 58999999999999887 47888999999999999999999999998864 4555555555
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC-CCHHHH
Q 019734 177 ISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVRAM 236 (336)
Q Consensus 177 ~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~ 236 (336)
.+| +.+|.++.. .+++++|+.+|++++.. .+++..
T Consensus 80 ~~~---------------------~~lg~~~~~----~~~~~~A~~~~~kal~~~~~~~~~ 115 (128)
T d1elra_ 80 KAY---------------------ARIGNSYFK----EEKYKDAIHFYNKSLAEHRTPDVL 115 (128)
T ss_dssp HHH---------------------HHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHH---------------------HHHHHHHHH----hCCHHHHHHHHHHHHhcCCCHHHH
Confidence 444 457777776 67888888888887643 334433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=7.4e-10 Score=82.55 Aligned_cols=104 Identities=9% Similarity=-0.027 Sum_probs=86.6
Q ss_pred hcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHhc
Q 019734 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS----TLAMVDAGLMYWE 149 (336)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~----~~a~~~lg~~~~~ 149 (336)
..+..+++.+|...|++.+...|+ ++.+++++|.++.. .+..+|+++|+..|++++..+. ..++++||.+|..
T Consensus 8 ~~~~~~~l~~Ae~~Y~~aL~~~p~--~~~~~~n~a~~L~~-s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~ 84 (122)
T d1nzna_ 8 ELVSVEDLLKFEKKFQSEKAAGSV--SKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 345678999999999999999887 89999999999875 2334577889999999987642 4588999999999
Q ss_pred CCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 019734 150 MDKKEAAISLYRQAAV--LGDPAGQFNLGISYL 180 (336)
Q Consensus 150 ~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~ 180 (336)
.|++++|+.+|+++++ +++..|...++.+..
T Consensus 85 ~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 85 LKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 9999999999999975 478888888877654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.03 E-value=3.3e-08 Score=85.43 Aligned_cols=210 Identities=10% Similarity=-0.032 Sum_probs=135.5
Q ss_pred HHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcC-C---------CCcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Q 019734 81 LRAASLVCKSWNDALRPLREAMVLLRWGKRFKHG-R---------GVRKNLDKALDSFLKGAAR---GSTLAMVDAGLMY 147 (336)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g-~---------g~~~~~~~A~~~~~~A~~~---~~~~a~~~lg~~~ 147 (336)
...+..+|.+.+...+. ++..|+..+...... . ...+..++|...|++|+.. .+...+..++.++
T Consensus 32 ~~Rv~~vyerAl~~~~~--~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~ 109 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 44566677777777766 777777666554431 0 0012356777888888763 3556677778888
Q ss_pred hcCCCHHHHHHHHHHHHHcC--C-HHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHH
Q 019734 148 WEMDKKEAAISLYRQAAVLG--D-PAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQ 218 (336)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~~--~-~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~ 218 (336)
...|++++|+..|.++++.. + ...+..++..... +.|...|+++++. .....+...+...... .++.+
T Consensus 110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~---~~~~~ 186 (308)
T d2onda1 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC---SKDKS 186 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT---SCCHH
T ss_pred HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---ccCHH
Confidence 88888888888888887652 2 3455666666655 7788888888765 3556666666554321 46778
Q ss_pred HHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CH----HHHHHHHHHhhccCCHHHHHH
Q 019734 219 EAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HG----KAQLEHGLGLFTEGEMMKAVV 290 (336)
Q Consensus 219 ~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~--~~----~a~~~lg~~~~~~~~~~~A~~ 290 (336)
.|...|++++. +.++..+...+.++.. .| +++.|...|++++... ++ ..+..........|+.+.+..
T Consensus 187 ~a~~i~e~~l~~~p~~~~~w~~y~~~~~~-~g---~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~ 262 (308)
T d2onda1 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSH-LN---EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TC---CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHH-cC---ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888765 3567777777777653 23 7788888888887742 21 122333333344678888888
Q ss_pred HHHHHHHcC
Q 019734 291 YLELATRAG 299 (336)
Q Consensus 291 ~~~~A~~~~ 299 (336)
.++++.+.-
T Consensus 263 ~~~r~~~~~ 271 (308)
T d2onda1 263 VEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 887776654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.01 E-value=5.8e-10 Score=81.87 Aligned_cols=91 Identities=10% Similarity=-0.006 Sum_probs=84.4
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (336)
.+..+..++..|++.+|+..+.++++..|+ ++.+++.||.+|.. .+++++|+.+|++++.. .++.+++.||.
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~~~la~ 92 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPE--REEAWRSLGLTQAE----NEKDGLAIIALNHARMLDPKDIAVHAALAV 92 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccc--cchhhhhhhhhhhh----hhhHHHhhcccccccccccccccchHHHHH
Confidence 466778888999999999999999999887 89999999999999 68999999999999987 58999999999
Q ss_pred HHhcCCCHHHHHHHHHHHH
Q 019734 146 MYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~ 164 (336)
+|...|++++|++.|++.+
T Consensus 93 ~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 93 SHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHh
Confidence 9999999999999999875
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=7.3e-09 Score=73.36 Aligned_cols=76 Identities=11% Similarity=-0.029 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C-------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CC
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--G-------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD 168 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~ 168 (336)
.++.+|.+|.++.. .+|+.+|+.||++|++. . ...++.+||.++...|++++|+.+|+++++. ++
T Consensus 4 saddc~~lG~~~~~----~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~ 79 (95)
T d1tjca_ 4 TAEDSFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (95)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC
Confidence 56789999999999 58999999999999875 1 2578999999999999999999999999754 78
Q ss_pred HHHHHHHHHHH
Q 019734 169 PAGQFNLGISY 179 (336)
Q Consensus 169 ~~a~~~Lg~~~ 179 (336)
+.++.+|+.+.
T Consensus 80 ~~a~~Nl~~~~ 90 (95)
T d1tjca_ 80 QRANGNLKYFE 90 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=2.8e-08 Score=78.26 Aligned_cols=111 Identities=12% Similarity=0.042 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC-----------------CHHHHHHHHHHHHcCCCCcccHHHHHHHH
Q 019734 198 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-----------------YVRAMYNTSLCYSFGEGLPLSHRQARKWM 260 (336)
Q Consensus 198 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~-----------------~~~a~~~lg~~~~~~~g~~~~~~~A~~~~ 260 (336)
..+.+.|..+.. .+++++|+.+|++++... ...++.++|.||.... ++++|+.++
T Consensus 14 ~~l~~~G~~~~~----~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~----~~~~A~~~~ 85 (170)
T d1p5qa1 14 TIVKERGTVYFK----EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ----AFSAAIESC 85 (170)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT----CHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhh----hcccccchh
Confidence 445566777666 677888888887776431 1355778999998743 999999999
Q ss_pred HHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC--cHHHHHHHHHHHhhcCh
Q 019734 261 KRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQLSA 316 (336)
Q Consensus 261 ~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~~~~~~~~~~~ 316 (336)
++++.. .++.+++.+|.+|...|++++|+.+|++++..+ ++.+...+..+...+..
T Consensus 86 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~ 145 (170)
T d1p5qa1 86 NKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 145 (170)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 999985 578999999999999999999999999999874 67777777777655533
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=1.3e-08 Score=76.31 Aligned_cols=100 Identities=16% Similarity=0.157 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--C----
Q 019734 197 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--H---- 268 (336)
Q Consensus 197 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~--~---- 268 (336)
+..+.++|..|.. .+++++|+.+|+++++ +.+..+++++|.+|.. .+++++|+.+++++++.. +
T Consensus 4 a~~~k~~G~~~~~----~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~~~~~~~~ 75 (128)
T d1elra_ 4 ALKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE----KGDYNKCRELCEKAIEVGRENREDY 75 (128)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHH----cCchHHHHHHHHHHHHhCcccHHHH
Confidence 3456789999988 8999999999999975 4689999999999976 349999999999998742 2
Q ss_pred ---HHHHHHHHHHhhccCCHHHHHHHHHHHHHcC-cHHHH
Q 019734 269 ---GKAQLEHGLGLFTEGEMMKAVVYLELATRAG-ETAAD 304 (336)
Q Consensus 269 ---~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~-~~~a~ 304 (336)
..+++.+|.++...+++++|+.+|++++... +++..
T Consensus 76 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~ 115 (128)
T d1elra_ 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL 115 (128)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHH
Confidence 3467889999999999999999999998753 34433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=4.6e-08 Score=76.98 Aligned_cols=108 Identities=14% Similarity=0.079 Sum_probs=71.8
Q ss_pred HHHHhcCCChhHHhhhHHHHHHHHHhCCCCC-------------HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--
Q 019734 70 NKIAASFTLPQLRAASLVCKSWNDALRPLRE-------------AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-- 134 (336)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-- 134 (336)
..+...|..|++++|+..|.+.++..+.... ..++.++|.+|.. .+++++|+.++++++..
T Consensus 18 ~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k----~~~~~~A~~~~~~al~~~p 93 (170)
T d1p5qa1 18 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK----LQAFSAAIESCNKALELDS 93 (170)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHh----hhhcccccchhhhhhhccc
Confidence 4455667777777787777777766443211 2345557777766 46777777777777765
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 019734 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ 181 (336)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 181 (336)
.++.+++.+|.+|...|++++|+..|+++++. +++.+...|+.+...
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 46777777777777777777777777777654 567777666666544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.87 E-value=1.6e-06 Score=74.52 Aligned_cols=208 Identities=10% Similarity=-0.058 Sum_probs=155.2
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC--------------CCHHHHHHHHHHHHHc---CCHHHHHHHHHHHH
Q 019734 120 NLDKALDSFLKGAAR--GSTLAMVDAGLMYWEM--------------DKKEAAISLYRQAAVL---GDPAGQFNLGISYL 180 (336)
Q Consensus 120 ~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~--------------~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~ 180 (336)
+.+++...|++|+.. .+++.|+..+..+... +..++|...|.+|++. .+...++.++.++.
T Consensus 31 ~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 31 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456778889999876 6888888877765432 3568899999999864 56677888888777
Q ss_pred H----HHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcc
Q 019734 181 Q----EEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPL 251 (336)
Q Consensus 181 ~----~~A~~~~~ka~~~~---~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~ 251 (336)
. +.|...|+++++.. ...++..++.+... .++.+.|+..|++++.. .....+...+.......|
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~----~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~--- 183 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK--- 183 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH----HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC---
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcc---
Confidence 6 99999999998753 34578888888887 78899999999999865 466777777776544433
Q ss_pred cHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC--cH-HHH-HHHHHHHhhcChhcHHHHHHH
Q 019734 252 SHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ET-AAD-HVKNVILQQLSATSRDRAMLV 325 (336)
Q Consensus 252 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~--~~-~a~-~~~~~~~~~~~~~~~~~a~~~ 325 (336)
+.+.|...|++++.. .++..+..++..+...|++++|..+|++|+... ++ ... .....+......++.+.+..+
T Consensus 184 ~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~ 263 (308)
T d2onda1 184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 899999999999985 667888889998999999999999999999853 22 221 222222222334566667766
Q ss_pred HHHhhcCCC
Q 019734 326 VDSWRAMPS 334 (336)
Q Consensus 326 ~~~~~~~~~ 334 (336)
.++..+.+|
T Consensus 264 ~~r~~~~~~ 272 (308)
T d2onda1 264 EKRRFTAFR 272 (308)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHCc
Confidence 666655554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.85 E-value=6.2e-08 Score=76.00 Aligned_cols=109 Identities=13% Similarity=0.048 Sum_probs=65.2
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCC-------------CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLR-------------EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR 134 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~ 134 (336)
+...+..+|..|++.+|+..|.+.+...+... ....+.++|.+|.. .+++++|+.++++++..
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~----l~~~~~Ai~~~~~al~l 93 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK----LREYTKAVECCDKALGL 93 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHH----hhhcccchhhhhhhhhc
Confidence 34456666777777777777766665443211 11234456666666 46666666666666654
Q ss_pred --CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 019734 135 --GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYL 180 (336)
Q Consensus 135 --~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~ 180 (336)
.+..+++.+|.+|...|++++|+..|.++++. +++.+...++.+..
T Consensus 94 ~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 94 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQK 143 (168)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45666666666666666666666666666543 45666655555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.81 E-value=4.5e-08 Score=76.87 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=55.8
Q ss_pred HHHHHHHhcCCCCcCCHHHHHHHHHHHHHc------------------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAAR------------------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 105 ~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~------------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
...|..+.. .+++.+|+..|.+|+.. .....+.++|.+|...|++++|+..|.++++.
T Consensus 31 ~~~~~~~~~----~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 106 (169)
T d1ihga1 31 KNIGNTFFK----SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 106 (169)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence 345666655 46888888888777642 12234555666666666666666666666543
Q ss_pred --CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 167 --GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCL 207 (336)
Q Consensus 167 --~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~ 207 (336)
+++.+++++|.+|.. ++|+..|+++++. ++..+...|+.++
T Consensus 107 ~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 107 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 455555555555554 5555555555443 3444444444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.80 E-value=4.4e-08 Score=76.89 Aligned_cols=106 Identities=15% Similarity=0.085 Sum_probs=80.2
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHH
Q 019734 201 YQLALCLHRGRGVDFNLQEAARWYLRAAE------------------GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKR 262 (336)
Q Consensus 201 ~~lg~~~~~g~g~~~~~~~A~~~~~~a~~------------------~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~ 262 (336)
...|..+.. .+++.+|+..|++++. +....++.++|.+|.... ++++|+..|++
T Consensus 31 ~~~~~~~~~----~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~----~~~~Ai~~~~~ 102 (169)
T d1ihga1 31 KNIGNTFFK----SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS----DWQGAVDSCLE 102 (169)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhc----ccchhhhhhhh
Confidence 344555544 4566666666666542 234567889999997633 99999999999
Q ss_pred HHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC--cHHHHHHHHHHHhhc
Q 019734 263 AADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQL 314 (336)
Q Consensus 263 a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~~~~~~~~~ 314 (336)
+++. +++.+++++|.+|...|++++|+..|+++++.. ++.+...+..+...+
T Consensus 103 al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l 158 (169)
T d1ihga1 103 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 158 (169)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9984 678999999999999999999999999999874 566666666665544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.79 E-value=7.5e-08 Score=74.33 Aligned_cols=108 Identities=14% Similarity=0.059 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC------------------CHHHHHHHHHHHHcCCCCcccHHHHHHH
Q 019734 198 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG------------------YVRAMYNTSLCYSFGEGLPLSHRQARKW 259 (336)
Q Consensus 198 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~------------------~~~a~~~lg~~~~~~~g~~~~~~~A~~~ 259 (336)
..+...|..+.. .+++.+|+..|++|+..- ....+.++|.+|.... ++++|+.+
T Consensus 18 ~~~~~~G~~~f~----~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~----~~~~Al~~ 89 (153)
T d2fbna1 18 FDIKEEGNEFFK----KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK----DYPKAIDH 89 (153)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT----CHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhc----ccchhhhh
Confidence 344556666665 677888888887776421 1246778999997644 99999999
Q ss_pred HHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC--cHHHHHHHHHHHhh
Q 019734 260 MKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQ 313 (336)
Q Consensus 260 ~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~~~~~~~~ 313 (336)
+++++.. .+..+++++|.+|...|++++|+.+|++++... +..+...+..+...
T Consensus 90 ~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 90 ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred hhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999985 668999999999999999999999999999875 45666666555443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.78 E-value=5.9e-08 Score=74.92 Aligned_cols=68 Identities=19% Similarity=0.314 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 140 MVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCL 207 (336)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~ 207 (336)
+.++|.+|...|++++|+.+|.++++. .++.+++.+|.+|.. ++|+.+|+++++. +++.+...++.+.
T Consensus 70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 70 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344555555555555555555554432 344555555555544 5555555555432 3444444444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.77 E-value=3e-08 Score=75.96 Aligned_cols=58 Identities=14% Similarity=-0.022 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH--------------HHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019734 151 DKKEAAISLYRQAAV--LGDPAGQFNLGISYLQ--------------EEAVKLLYQASIA--GHVRAQYQLALCLH 208 (336)
Q Consensus 151 ~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~~--------------~~A~~~~~ka~~~--~~~~a~~~lg~~~~ 208 (336)
+.+++|+..|+++++ ++++++++++|.++.. ++|+.+|++|++. .++.+++++|.+|.
T Consensus 11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 345555555555542 3455555555555542 4566666666543 45666666666654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.75 E-value=1.4e-07 Score=73.95 Aligned_cols=111 Identities=14% Similarity=0.038 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHcCCCCcccHHHHHHH
Q 019734 197 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-----------------GYVRAMYNTSLCYSFGEGLPLSHRQARKW 259 (336)
Q Consensus 197 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~-----------------~~~~a~~~lg~~~~~~~g~~~~~~~A~~~ 259 (336)
+..+...|..+.. .+++.+|+.+|++|+.. -....+.++|.||... +++++|+.+
T Consensus 15 a~~~~e~G~~~~~----~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l----~~~~~Ai~~ 86 (168)
T d1kt1a1 15 AAIVKEKGTVYFK----GGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL----REYTKAVEC 86 (168)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT----TCHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHh----hhcccchhh
Confidence 3445667777776 67788888888777641 0234567899999763 399999999
Q ss_pred HHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC--cHHHHHHHHHHHhhcC
Q 019734 260 MKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQLS 315 (336)
Q Consensus 260 ~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~~~~~~~~~~ 315 (336)
+++++.. ++..+++++|.+|...|++++|+.+|++++... ++.+...+..+...+.
T Consensus 87 ~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 87 CDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999985 678999999999999999999999999999875 5566666666655543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.72 E-value=5.3e-08 Score=74.52 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=66.1
Q ss_pred hhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC------CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC
Q 019734 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR------GVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEM 150 (336)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~------g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~ 150 (336)
+.+++|...+.+.++..|+ ++++++.+|.++..-. ...+.+++|+.+|++|++. .++.+++++|.+|...
T Consensus 11 ~~fe~A~~~~e~al~~~P~--~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCc--chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence 4588888888888888877 8888999998876400 0124567888888888876 4778888888888664
Q ss_pred C-----------CHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 151 D-----------KKEAAISLYRQAAVL--GDPAGQFNLGISY 179 (336)
Q Consensus 151 ~-----------~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~ 179 (336)
| ++++|+.+|+++++. ++..++..|+.+.
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 130 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence 3 245555555555433 4455554444443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=1.1e-07 Score=67.07 Aligned_cols=77 Identities=9% Similarity=0.062 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc---------CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC--cH
Q 019734 233 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ET 301 (336)
Q Consensus 233 ~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~---------~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~--~~ 301 (336)
++.++.+|.++.... ++++|+.||++|+.. ....++.+||.++...|++++|+.+|+++++.. ++
T Consensus 5 addc~~lG~~~~~~g----~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~ 80 (95)
T d1tjca_ 5 AEDSFELGKVAYTEA----DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (95)
T ss_dssp HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence 455667777665422 777777777777652 114567788888888888888888888887764 45
Q ss_pred HHHHHHHHHHhh
Q 019734 302 AADHVKNVILQQ 313 (336)
Q Consensus 302 ~a~~~~~~~~~~ 313 (336)
.+..++..+...
T Consensus 81 ~a~~Nl~~~~~~ 92 (95)
T d1tjca_ 81 RANGNLKYFEYI 92 (95)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666555443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.56 E-value=2.1e-07 Score=71.90 Aligned_cols=93 Identities=18% Similarity=-0.067 Sum_probs=72.4
Q ss_pred HHHHHH--HHHHhcCCCCccCHHHHHHHHHHHHHC--C------------CHHHHHHHHHHHHcCCCCcccHHHHHHHHH
Q 019734 198 RAQYQL--ALCLHRGRGVDFNLQEAARWYLRAAEG--G------------YVRAMYNTSLCYSFGEGLPLSHRQARKWMK 261 (336)
Q Consensus 198 ~a~~~l--g~~~~~g~g~~~~~~~A~~~~~~a~~~--~------------~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~ 261 (336)
.++..+ |..+.. .+++++|+..|+++++. . ...++.++|.+|.... ++++|+.+++
T Consensus 8 ~a~~~l~~g~~~~~----~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg----~~~~A~~~~~ 79 (156)
T d2hr2a1 8 GAYLALSDAQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR----SFDEALHSAD 79 (156)
T ss_dssp HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcC----ccchhhHhhh
Confidence 445555 555555 67899999999999753 1 2467889999996633 9999999999
Q ss_pred HHHHcC-------------CHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 262 RAADCG-------------HGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 262 ~a~~~~-------------~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
+++... ...+++++|.+|...|++++|+.+|++|++.
T Consensus 80 ~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 80 KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998631 1346799999999999999999999999975
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.52 E-value=2.7e-07 Score=71.29 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=58.8
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCC----------HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC---
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLRE----------AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--- 135 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--- 135 (336)
+..+..++..|++++|+..|.+.++..+..++ +.++.++|.+|.. .+++++|+.++++++...
T Consensus 13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~----lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG----LRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH----cCccchhhHhhhhhhhccccc
Confidence 34455556667777777777777766655432 3566667777766 467777777777766430
Q ss_pred ----------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019734 136 ----------STLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 136 ----------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (336)
...+++++|.+|...|++++|+..|++|++
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 123566677777777777777777777664
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.91 E-value=9.6e-06 Score=67.96 Aligned_cols=108 Identities=12% Similarity=-0.006 Sum_probs=72.2
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHH
Q 019734 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLY 189 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ 189 (336)
.+++++|+..|+++++. +++.++..||.+|...|++++|+..|+++++. ++..+...++.++.. +++...+.
T Consensus 9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~ 88 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAA 88 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhh
Confidence 46888999999998887 58888899999998889999999999988765 567777777777653 11111111
Q ss_pred HHHHcCC---HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 019734 190 QASIAGH---VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 229 (336)
Q Consensus 190 ka~~~~~---~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~ 229 (336)
+....+. ..+....+.++.. .++.++|+..++++.+
T Consensus 89 ~~~~~~~p~~~~~~l~~a~~~~~----~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 89 TAKVLGENEELTKSLVSFNLSMV----SQDYEQVSELALQIEE 127 (264)
T ss_dssp CEECCCSCHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred hhhcccCchHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHh
Confidence 1111121 2334445555555 5677777777777654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.82 E-value=5.6e-05 Score=59.23 Aligned_cols=30 Identities=20% Similarity=-0.012 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
.+++...|......|++++|+..|.+|+..
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l 40 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALRE 40 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 356667777888888888888888888764
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.82 E-value=7e-06 Score=68.84 Aligned_cols=117 Identities=11% Similarity=-0.011 Sum_probs=91.4
Q ss_pred HHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019734 72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWE 149 (336)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~ 149 (336)
+..++..|++++|+..+.+.++..|. ++.+...||.+|.. .|++++|+..|+++++. .+..+...++.++..
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~--d~~ar~~La~lL~~----~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a 76 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCI----DGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 76 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 45678999999999999999999888 99999999999999 69999999999999987 477888888888866
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHH----HHHHHHHHHHHHc
Q 019734 150 MDKKEAAISLYRQAAVLGDP---AGQFNLGISYLQ----EEAVKLLYQASIA 194 (336)
Q Consensus 150 ~~~~~~A~~~~~~a~~~~~~---~a~~~Lg~~~~~----~~A~~~~~ka~~~ 194 (336)
.+..+++...+.+....+++ .++...+.++.. ++|+..++++.+.
T Consensus 77 ~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 77 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 55555554444443333333 344555666655 9999999998764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.80 E-value=0.00017 Score=56.40 Aligned_cols=63 Identities=5% Similarity=-0.217 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 231 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 231 ~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
....++.+++.++.... ++++|+.++++++.. .+..++.+|+.++...|++.+|+..|+++.+
T Consensus 65 ~~~~a~~~la~~~~~~g----~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 65 DKVLAHTAKAEAEIACG----RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC----CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34678899999997633 999999999999885 6789999999999999999999999999854
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.65 E-value=0.00014 Score=52.59 Aligned_cols=83 Identities=11% Similarity=0.108 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHc--CcHHHHHH
Q 019734 232 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHV 306 (336)
Q Consensus 232 ~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~ 306 (336)
...+.|+.|+++.+-. ...+.++++..++..+..++ -+.+|+||..|++.|++++|..+++++++. ++..|...
T Consensus 34 s~qt~F~YAw~Lv~S~-~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp CHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcchHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 5788999999997543 35688999999999987543 467799999999999999999999999986 46677777
Q ss_pred HHHHHhhcC
Q 019734 307 KNVILQQLS 315 (336)
Q Consensus 307 ~~~~~~~~~ 315 (336)
...+...+.
T Consensus 113 ~~~Ie~~~~ 121 (124)
T d2pqrb1 113 KSMVEDKIQ 121 (124)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 776665543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.47 E-value=0.00042 Score=49.99 Aligned_cols=78 Identities=1% Similarity=-0.146 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--C-HHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHH
Q 019734 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S-TLAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQ 172 (336)
Q Consensus 98 ~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~-~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~ 172 (336)
.....+.|.+|.++.+- ....|..+|+..|+.+.+.+ + .+.+|.||..|+..|++++|+.++.++++ +++..|.
T Consensus 32 ~~s~qt~F~YAw~Lv~S-~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKS-TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp GSCHHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCcchHHHHHHHHHcC-CcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 34677888888877762 23568899999999998764 2 47899999999999999999999999975 4788876
Q ss_pred HHHH
Q 019734 173 FNLG 176 (336)
Q Consensus 173 ~~Lg 176 (336)
...-
T Consensus 111 ~L~~ 114 (124)
T d2pqrb1 111 ALKS 114 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.57 E-value=3.3 Score=35.66 Aligned_cols=51 Identities=4% Similarity=-0.279 Sum_probs=39.0
Q ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC
Q 019734 214 DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 268 (336)
Q Consensus 214 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~ 268 (336)
.+....|...+..++...+..-...++.+... .| .++.|+....++-..++
T Consensus 394 ~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~-~g---~~~~aI~a~~~~~~~d~ 444 (450)
T d1qsaa1 394 WNLDNTARSEWANLVKSKSKTEQAQLARYAFN-NQ---WWDLSVQATIAGKLWDH 444 (450)
T ss_dssp TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHTTCTTC
T ss_pred cCCchHHHHHHHHHHhCCCHHHHHHHHHHHHH-CC---ChhHHHHHHHHHHccCc
Confidence 47788999988888877788888888887754 33 89999988877744444
|
| >d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain family: MIT domain domain: Hypothetical protein 1500032H18Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.64 E-value=2.5 Score=27.80 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=23.7
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 249 LPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 249 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
...+..+|+..+++|++ +...|++++|+.+|..|++
T Consensus 8 ~~~~~~~A~~l~~~Av~-------------~D~~g~y~eA~~~Y~~aie 43 (93)
T d1wfda_ 8 QDSDSTAAVAVLKRAVE-------------LDAESRYQQALVCYQEGID 43 (93)
T ss_dssp CCCHHHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHH
Confidence 44566777777777765 3446677777777777765
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.34 E-value=6.8 Score=30.38 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHc-------CCHHH---HHHHHHHhhc-cCCHHHHHHHHHHHHH
Q 019734 253 HRQARKWMKRAADC-------GHGKA---QLEHGLGLFT-EGEMMKAVVYLELATR 297 (336)
Q Consensus 253 ~~~A~~~~~~a~~~-------~~~~a---~~~lg~~~~~-~~~~~~A~~~~~~A~~ 297 (336)
.++|...|+.|.+. -+|-. ..|.+..|++ .++.++|+..-+.|+.
T Consensus 142 ~~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd 197 (230)
T d2o02a1 142 VDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFD 197 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45788888888752 22322 2455555554 8999999999999875
|
| >d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain family: MIT domain domain: Hypothetical protein 1500032H18Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.36 E-value=0.63 Score=30.94 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=29.1
Q ss_pred CCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019734 116 GVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 116 g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (336)
|...+..+|+.+..+|++.+ ..|++++|+.+|.++++
T Consensus 7 ~~~~~~~~A~~l~~~Av~~D-------------~~g~y~eA~~~Y~~aie 43 (93)
T d1wfda_ 7 GQDSDSTAAVAVLKRAVELD-------------AESRYQQALVCYQEGID 43 (93)
T ss_dssp CCCCHHHHHHHHHHHHHHHH-------------HTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHHH
Confidence 55677888998888887653 67888888888888874
|