Citrus Sinensis ID: 019748

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
MDFSLENPFTNFHELFNDDDEDSTETILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQFSCKFDPFLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQIEFSYTQFQADGGLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCPYVNKENLLRCYNAMQDTSMDDEYESEIDLVSSSYTPVNVLDCRVSSSGSDKTNVTTTDTKATSSSSDSSTTSTELSPERDTKRRKLSSYRNNHSIQLSQTQQC
ccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccccHHccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccc
ccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHEEccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHccccccEEEEcccccccccccHHcccccccccccEEEEEcccccccccccccccccccccHHHcHHcHcHccccEEEEccccc
mdfslenpftnfhelfndddedsTETILESLFLvesdhmpsksyiktlkgrdldnslRSRAVSSILQfsckfdpflSYLAVNYMDRylssqempqpkpwklRLLAVSCFSLAAKMRQIEFSYTqfqadgglifdtQTIQRMECLILGALKwrmrsitpfTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKaisncpyvnkenLLRCYNAMqdtsmddeyESEIDLvsssytpvnvldcrvsssgsdktnvtttdtkatssssdssttstelsperdtkrrklssyrnnhsiqlsqtqqc
MDFSLENPFTNFHELFNDDDEDSTETILESLflvesdhmpSKSYIKtlkgrdldnSLRSRAVSSILQFSCKFDPFLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQIEFSYTQFQADGGLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCPYVNKENLLRCYNAMQDTSMDDEYESEIDLVSSSYTPVNVLDCrvsssgsdktnvtttdtkatssssdssttstelsperdtkrrklssyrnnhsiqlsqtqqc
MDFSLENPFTNFHELFNDDDEDSTETILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQFSCKFDPFLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQIEFSYTQFQADGGLIFDTQTIQRMECLILGALKWRMRsitpftflsffislfklkDLTVQRALKTRASEVIFQAQIDIKLIEFKPsiiaasallfasRELFPLQFHCFRKAISNCPYVNKENLLRCYNAMQDTSMDDEYESEIDLVSSSYTPVNVLDCRVSSSGsdktnvtttdtkatssssdssttstELSPERDTKRRKLSSYRNNHSIQLSQTQQC
**************************ILESLFLVE********YIKTL********LRSRAVSSILQFSCKFDPFLSYLAVNYMDRYLSS*****PKPWKLRLLAVSCFSLAAKMRQIEFSYTQFQADGGLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCPYVNKENLLRCYNAMQD**********IDLVSSSYTPVNVLDC*************************************************************
*DFS*ENPFTNFHELFNDDDEDSTETILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQFSCKFDPFLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQIEFSYTQFQADGGLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCPYVNKENLLRCYNAMQ************************LDCRV*****************************************************S*TQQ*
MDFSLENPFTNFHELFNDDDEDSTETILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQFSCKFDPFLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQIEFSYTQFQADGGLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCPYVNKENLLRCYNAMQDTSMDDEYESEIDLVSSSYTPVNVLDCRVS*******************************************YRNN***********
******NPFTNFHELFNDDDEDSTETILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQFSCKFDPFLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQIEFSYTQFQADGGLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCPYVNKENLLRCYNAMQDTSMDDEYESEIDLVSSSYTPVNVLDCRVSSSGSDKTNVTTTDTK***********************R*LSSYRNNHSIQLS*****
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDFSLENPFTNFHELFNDDDEDSTETILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQFSCKFDPFLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQIEFSYTQFQADGGLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCPYVNKENLLRCYNAMQDTSMDDEYESEIDLVSSSYTPVNVLDCRVSSSGSDKTNVTTTDTKATSSSSDSSTTSTELSPERDTKRRKLSSYRNNHSIQLSQTQQC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query336 2.2.26 [Sep-21-2011]
Q9ZR04302 Putative cyclin-D6-1 OS=A yes no 0.872 0.970 0.512 1e-73
Q69S43320 Cyclin-D6-1 OS=Oryza sati yes no 0.857 0.9 0.334 1e-34
P42751339 Cyclin-D1-1 OS=Arabidopsi no no 0.648 0.643 0.370 4e-33
Q0J233308 Cyclin-D2-1 OS=Oryza sati no no 0.598 0.652 0.380 5e-32
Q8LGA1308 Cyclin-D4-1 OS=Arabidopsi no no 0.592 0.646 0.367 6e-31
Q8LHA8356 Cyclin-D2-2 OS=Oryza sati no no 0.821 0.775 0.320 3e-30
Q0WQN9298 Cyclin-D4-2 OS=Arabidopsi no no 0.577 0.651 0.36 1e-29
Q4KYM5383 Cyclin-D4-2 OS=Oryza sati no no 0.642 0.563 0.323 4e-28
P42752361 Cyclin-D2-1 OS=Arabidopsi no no 0.797 0.742 0.298 3e-27
Q8H339354 Cyclin-D1-2 OS=Oryza sati no no 0.630 0.598 0.381 1e-26
>sp|Q9ZR04|CCD61_ARATH Putative cyclin-D6-1 OS=Arabidopsis thaliana GN=CYCD6-1 PE=3 SV=1 Back     alignment and function desciption
 Score =  277 bits (708), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 160/312 (51%), Positives = 213/312 (68%), Gaps = 19/312 (6%)

Query: 1   MDFSLENPFTN--FHELFNDDDEDSTETILESLFLVESDHMPSKSYIKTLKGRDLDNSLR 58
           M+F LE+P ++   H  FNDD +   ET+  SLFLVE  HMPS  Y  +LK      S R
Sbjct: 1   MEFHLEHPLSHSSLHNNFNDDTD--YETLPHSLFLVEFQHMPSSHYFHSLKSSAFLLSNR 58

Query: 59  SRAVSSILQFSCKFD-PFLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQ 117
           ++A+SSI Q+S KFD P L+YLAVNY+DR+LSS++MPQ KPW L+L+++SC SL+AKMR+
Sbjct: 59  NQAISSITQYSRKFDDPSLTYLAVNYLDRFLSSEDMPQSKPWILKLISLSCVSLSAKMRK 118

Query: 118 IEFSYTQFQADGGLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKD---L 174
            + S +    +G   FD Q I+RME +ILGALKWRMRS+TPF+FL+FFISLF+LK+   L
Sbjct: 119 PDMSVSDLPVEGEF-FDAQMIERMENVILGALKWRMRSVTPFSFLAFFISLFELKEEDPL 177

Query: 175 TVQRALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCPY 234
            ++ +LK++ S++ F  Q DI  +EFKPS+IA +ALLFAS EL PLQF CF   I+ C Y
Sbjct: 178 LLKHSLKSQTSDLTFSLQHDISFLEFKPSVIAGAALLFASFELCPLQFPCFSNRINQCTY 237

Query: 235 VNKENLLRCYNAMQDTSMDDEYESEIDLVSSSYTPVNVLDCRVSSSGSDKTNVTTTDTKA 294
           VNK+ L+ CY A+Q+  +    E+E     S+ T VNVLD + SS  SDK+ +T T    
Sbjct: 238 VNKDELMECYKAIQERDIIVG-ENE----GSTETAVNVLDQQFSSCESDKS-ITIT---- 287

Query: 295 TSSSSDSSTTST 306
            SSS     TST
Sbjct: 288 ASSSPKRRKTST 299

Arabidopsis thaliana (taxid: 3702)
>sp|Q69S43|CCD61_ORYSJ Cyclin-D6-1 OS=Oryza sativa subsp. japonica GN=CYCD6-1 PE=2 SV=1 Back     alignment and function description
>sp|P42751|CCD11_ARATH Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3 Back     alignment and function description
>sp|Q0J233|CCD21_ORYSJ Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2 Back     alignment and function description
>sp|Q8LGA1|CCD41_ARATH Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2 Back     alignment and function description
>sp|Q8LHA8|CCD22_ORYSJ Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYCD2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q0WQN9|CCD42_ARATH Cyclin-D4-2 OS=Arabidopsis thaliana GN=CYCD4-2 PE=1 SV=2 Back     alignment and function description
>sp|Q4KYM5|CCD42_ORYSJ Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2 Back     alignment and function description
>sp|P42752|CCD21_ARATH Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=1 SV=3 Back     alignment and function description
>sp|Q8H339|CCD12_ORYSJ Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYCD1-2 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query336
224146705324 predicted protein [Populus trichocarpa] 0.934 0.969 0.619 1e-110
359359238324 D6-type cyclin [Populus x canadensis] 0.934 0.969 0.619 1e-110
363808000316 uncharacterized protein LOC100799951 [Gl 0.925 0.984 0.516 7e-93
356515222329 PREDICTED: putative cyclin-D6-1-like [Gl 0.925 0.945 0.533 1e-92
356543770315 PREDICTED: putative cyclin-D6-1-like [Gl 0.922 0.984 0.507 2e-91
356544884324 PREDICTED: putative cyclin-D6-1-like [Gl 0.928 0.962 0.520 1e-87
357453607302 Cyclin-D5-2 [Medicago truncatula] gi|355 0.883 0.983 0.515 1e-87
225447693294 PREDICTED: putative cyclin-D6-1 [Vitis v 0.872 0.996 0.540 1e-83
296081259315 unnamed protein product [Vitis vinifera] 0.877 0.936 0.541 2e-83
255567453305 cyclin d, putative [Ricinus communis] gi 0.898 0.990 0.510 6e-83
>gi|224146705|ref|XP_002326106.1| predicted protein [Populus trichocarpa] gi|159025735|emb|CAN88868.1| D6-type cyclin [Populus trichocarpa] gi|222862981|gb|EEF00488.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/331 (61%), Positives = 246/331 (74%), Gaps = 17/331 (5%)

Query: 1   MDFSLENPFTNFHELFNDDDEDSTETILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSR 60
           MDF+LENP TN HEL  D           SLFL+ESDHMPSK+Y+KTLK  D D S R  
Sbjct: 1   MDFNLENPLTNSHELHFDTTP--------SLFLIESDHMPSKNYLKTLKEIDFDVSFRRE 52

Query: 61  AVSSILQFSCKFDPFLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQIEF 120
           A+SS+L+ SC FDP LSYLAVNY+DR+LSSQ +PQPKPW  +LLAV+C SLAAKM++ EF
Sbjct: 53  AISSVLRVSCNFDPSLSYLAVNYLDRFLSSQGIPQPKPWVFKLLAVACVSLAAKMKEAEF 112

Query: 121 SYTQFQADGGLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTVQRAL 180
             T  Q DGG +FD QTIQ+ME LILGAL WRMRSITPF+F+SFFISLFK KD  +++AL
Sbjct: 113 YVTDIQGDGGFVFDPQTIQKMEVLILGALNWRMRSITPFSFISFFISLFKPKDPPLRQAL 172

Query: 181 KTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCPYVNKENL 240
           K RA E+IF+AQ DI L+EF+PS+ AASALL+A  ELFP+QF CFRKAIS C YVNKENL
Sbjct: 173 KARACEIIFKAQNDINLLEFRPSLTAASALLYACHELFPMQFLCFRKAISICSYVNKENL 232

Query: 241 LRCYNAMQDTSMDDEYESEIDLVSSSYTPVNVLDCRVSSSGSDKTNVTTTDTKATSSSSD 300
           L+CYNAMQ+T+MD  Y+S+ D+VSSS TPVNVLD   SSS S+ TN T            
Sbjct: 233 LQCYNAMQETAMDG-YKSQFDMVSSSDTPVNVLDRHFSSSESENTNGTVVMI-------- 283

Query: 301 SSTTSTELSPERDTKRRKLSSYRNNHSIQLS 331
           SS  S +  PE+  KRRK+S+  NN ++Q S
Sbjct: 284 SSNGSNKTWPEKGIKRRKISALCNNQTVQFS 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359359238|gb|AEV41137.1| D6-type cyclin [Populus x canadensis] Back     alignment and taxonomy information
>gi|363808000|ref|NP_001242717.1| uncharacterized protein LOC100799951 [Glycine max] gi|255634925|gb|ACU17821.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356515222|ref|XP_003526300.1| PREDICTED: putative cyclin-D6-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356543770|ref|XP_003540333.1| PREDICTED: putative cyclin-D6-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356544884|ref|XP_003540877.1| PREDICTED: putative cyclin-D6-1-like [Glycine max] Back     alignment and taxonomy information
>gi|357453607|ref|XP_003597084.1| Cyclin-D5-2 [Medicago truncatula] gi|355486132|gb|AES67335.1| Cyclin-D5-2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|225447693|ref|XP_002276869.1| PREDICTED: putative cyclin-D6-1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081259|emb|CBI18003.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255567453|ref|XP_002524706.1| cyclin d, putative [Ricinus communis] gi|223536067|gb|EEF37725.1| cyclin d, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query336
TAIR|locus:2125522302 CYCD6;1 "AT4G03270" [Arabidops 0.806 0.897 0.442 2.4e-53
TAIR|locus:2020663339 CYCD1;1 "CYCLIN D1;1" [Arabido 0.708 0.702 0.296 5.3e-24
TAIR|locus:2142504298 CYCD4;2 "AT5G10440" [Arabidops 0.526 0.593 0.327 5.5e-22
TAIR|locus:2083128361 CYCD3;3 "AT3G50070" [Arabidops 0.791 0.736 0.249 1.5e-17
TAIR|locus:2157172367 CYCD3;2 "AT5G67260" [Arabidops 0.657 0.602 0.262 1e-12
TAIR|locus:2124331376 CYCD3;1 "CYCLIN D3;1" [Arabido 0.285 0.255 0.38 9.1e-12
UNIPROTKB|Q10QA2345 CYCD5-3 "Cyclin-D5-3" [Oryza s 0.604 0.588 0.242 8.8e-10
TAIR|locus:2120081323 CYCD5;1 "AT4G37630" [Arabidops 0.321 0.334 0.327 4.5e-08
UNIPROTKB|P50755291 ccnd1 "G1/S-specific cyclin-D1 0.360 0.415 0.320 8.6e-07
UNIPROTKB|Q8WNW2288 CCND2 "G1/S-specific cyclin-D2 0.369 0.430 0.278 1.1e-06
TAIR|locus:2125522 CYCD6;1 "AT4G03270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 126/285 (44%), Positives = 171/285 (60%)

Query:     1 MDFSLENPFTN--FHELFNDDDEDSTETILESLFLVESDHMPSKSYIKTLKGRDLDNSLR 58
             M+F LE+P ++   H  FNDD +   ET+  SLFLVE  HMPS  Y  +LK      S R
Sbjct:     1 MEFHLEHPLSHSSLHNNFNDDTD--YETLPHSLFLVEFQHMPSSHYFHSLKSSAFLLSNR 58

Query:    59 SRAVSSILQFSCKFD-PFLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQ 117
             ++A+SSI Q+S KFD P L+YLAVNY+DR+LSS++MPQ KPW L+L+++SC SL+AKMR+
Sbjct:    59 NQAISSITQYSRKFDDPSLTYLAVNYLDRFLSSEDMPQSKPWILKLISLSCVSLSAKMRK 118

Query:   118 IEFSYTQFQADGGLIFDTQTIQRMECLILGALKWRMRXXXXXXXXXXXXXXXXXXD---L 174
              + S +    +G   FD Q I+RME +ILGALKWRMR                  +   L
Sbjct:   119 PDMSVSDLPVEGEF-FDAQMIERMENVILGALKWRMRSVTPFSFLAFFISLFELKEEDPL 177

Query:   175 TVQRALKTRASEVIFQAQIDIKLIEFKPXXXXXXXXXXXXRELFPLQFHCFRKAISNCPY 234
              ++ +LK++ S++ F  Q DI  +EFKP             EL PLQF CF   I+ C Y
Sbjct:   178 LLKHSLKSQTSDLTFSLQHDISFLEFKPSVIAGAALLFASFELCPLQFPCFSNRINQCTY 237

Query:   235 VNKENLLRCYNAMQDTSMDDEYESEIDLVSSSYTPVNVLDCRVSS 279
             VNK+ L+ CY A+Q+  +    E+E     S+ T VNVLD + SS
Sbjct:   238 VNKDELMECYKAIQERDIIVG-ENE----GSTETAVNVLDQQFSS 277
GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0051726 "regulation of cell cycle" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0010440 "stomatal lineage progression" evidence=RCA
GO:0042023 "DNA endoreduplication" evidence=RCA
GO:0045736 "negative regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=RCA
TAIR|locus:2020663 CYCD1;1 "CYCLIN D1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142504 CYCD4;2 "AT5G10440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083128 CYCD3;3 "AT3G50070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157172 CYCD3;2 "AT5G67260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124331 CYCD3;1 "CYCLIN D3;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q10QA2 CYCD5-3 "Cyclin-D5-3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2120081 CYCD5;1 "AT4G37630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P50755 ccnd1 "G1/S-specific cyclin-D1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WNW2 CCND2 "G1/S-specific cyclin-D2" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZR04CCD61_ARATHNo assigned EC number0.51280.87200.9701yesno
Q69S43CCD61_ORYSJNo assigned EC number0.33430.85710.9yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00191050
SubName- Full=D6-type cyclin; (324 aa)
(Populus trichocarpa)
Predicted Functional Partners:
KRP-7
SubName- Full=Putative uncharacterized protein; (206 aa)
      • 0.688

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 7e-21
cd0004388 cd00043, CYCLIN, Cyclin box fold 1e-08
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 2e-08
COG5024440 COG5024, COG5024, Cyclin [Cell division and chromo 2e-04
pfam02984117 pfam02984, Cyclin_C, Cyclin, C-terminal domain 2e-04
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score = 86.4 bits (215), Expect = 7e-21
 Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 22/138 (15%)

Query: 27  ILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQFSCKFDPFLS----YLAVN 82
           I   L  +E +  P   Y+   +  D++  +R+  +  +++   +F   L     YLAVN
Sbjct: 2   IYAYLRELEEEDRPPPDYLD--QQPDINPKMRAILIDWLVEVHEEFK--LLPETLYLAVN 57

Query: 83  YMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQI------EFSYTQFQADGGLIFDTQ 136
           Y+DR+LS Q +P     KL+L+ V+C  +AAK  +I      +F    +  D    +  +
Sbjct: 58  YLDRFLSKQPVP---RTKLQLVGVTCLLIAAKYEEIYPPSVEDF---VYITDN--AYTKE 109

Query: 137 TIQRMECLILGALKWRMR 154
            I RME LIL  L W + 
Sbjct: 110 EILRMELLILSTLNWDLS 127

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|217307 pfam02984, Cyclin_C, Cyclin, C-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 336
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 100.0
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 100.0
KOG0653391 consensus Cyclin B and related kinase-activating p 100.0
COG5024440 Cyclin [Cell division and chromosome partitioning] 100.0
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 99.97
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.92
TIGR00569305 ccl1 cyclin ccl1. University). 99.89
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 99.8
KOG0835367 consensus Cyclin L [General function prediction on 99.79
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 99.71
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.65
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.54
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 99.48
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.46
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.41
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.37
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 98.72
KOG1597308 consensus Transcription initiation factor TFIIB [T 98.32
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.3
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.26
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.24
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 97.95
KOG1598 521 consensus Transcription initiation factor TFIIIB, 97.4
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 95.53
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 94.89
KOG1674218 consensus Cyclin [General function prediction only 93.5
PRK00423310 tfb transcription initiation factor IIB; Reviewed 93.28
PF09080106 K-cyclin_vir_C: K cyclin, C terminal; InterPro: IP 90.1
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 83.84
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 80.92
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=3.1e-51  Score=383.69  Aligned_cols=222  Identities=38%  Similarity=0.666  Sum_probs=205.4

Q ss_pred             ccHHHHHHHHHHHhhccCCCcchhhhccCCCCCHHHHHHHHHHHHhh--hcccChhHHHHHHHHHHHhhhccccCCCCcc
Q 019748           22 DSTETILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQF--SCKFDPFLSYLAVNYMDRYLSSQEMPQPKPW   99 (336)
Q Consensus        22 ~y~~ei~~~l~~~E~~~~p~~~yl~~~~~~~i~~~~R~~~vdWi~~v--~~~~~~~T~~lAv~~lDRfLs~~~v~~~~~~   99 (336)
                      .++++++..|+++|.++.|..+|..+++. .+.+.||.++++||++|  +++|++++++||+|||||||+.+.+++++||
T Consensus        43 ~~~e~~i~~ll~kEe~~~p~~~~~~~~~~-~~~~~~R~~A~~WIl~V~~~~~~~~~~~~LA~NYlDRFls~~~l~k~k~W  121 (335)
T KOG0656|consen   43 LWDERVLANLLEKEEQHNPSLDYFLCVQK-LILSSMRKQALDWILKVCEEYNFEPLVFLLAMNYLDRFLSSQKLPKDKPW  121 (335)
T ss_pred             cccHHHHHHHHHHHHHhCCCCchhhhccc-ccccHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhhcccccCCCchH
Confidence            57899999999999999999997777664 58888999999999999  7999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhccCcc-hhhhhhhc-CCccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHccCCChHHH
Q 019748          100 KLRLLAVSCFSLAAKMRQIEFS-YTQFQADG-GLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTVQ  177 (336)
Q Consensus       100 ~lqLlavaCL~lAsK~eE~~~p-l~dl~~~~-~~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~~~~~~~~~~  177 (336)
                      ++||+|+|||+||||+||+.+| +.|+++++ .+.|.+++|++||++||++|+|||+++||++|+++|+++++..+.. .
T Consensus       122 ~lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~~~feaktI~rmELLVLstL~Wrl~aVTP~sF~~~fl~ki~~~~~~-~  200 (335)
T KOG0656|consen  122 MLQLLAVACLSLASKMEETDVPLLADLQVEYTDNVFEAKTIQRMELLVLSTLKWRLRAVTPFSFIDHFLSKISQKDHN-K  200 (335)
T ss_pred             HHHHHHHHHHHHHHhhcCcCCchhhhhhhccccccccHHHHHHHHHHHHhhccccccCCCchHHHHHHHHHcCcccch-H
Confidence            9999999999999999999988 78998887 6999999999999999999999999999999999999999987543 4


Q ss_pred             HHHHHHHHHHHHHHhcchhhhCccHHHHHHHHHHHHHHHhCCCchhhhHHhchhcCCCCHhhHHHHHH
Q 019748          178 RALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCPYVNKENLLRCYN  245 (336)
Q Consensus       178 ~~l~~~~~~l~~~~l~d~~~l~~~PS~iAaAal~~a~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~  245 (336)
                      +.+..++..++..+..|.+|++|+||+||+|++.++...+.+.....+...+..+.+++++.+..|+.
T Consensus       201 ~~~~~~~s~~ll~~~~d~~Fl~y~pSviAaa~~~~v~~~~~~l~~~~~~~~~~~~~~l~~e~~~~~~~  268 (335)
T KOG0656|consen  201 HLFLKHASLFLLSVITDIKFLEYPPSVIAAAAILSVSASVDGLDFREYENNLLSLLSLSKEKVNRCYD  268 (335)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhHHhhhcchh
Confidence            67889999999999999999999999999999999999988776666667788888999999999998

>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>PF09080 K-cyclin_vir_C: K cyclin, C terminal; InterPro: IPR015164 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
3g33_B306 Crystal Structure Of Cdk4CYCLIN D3 Length = 306 3e-05
1w98_B283 The Structural Basis Of Cdk2 Activation By Cyclin E 6e-04
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3 Length = 306 Back     alignment and structure 
Iteration: 1

 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 19/134 (14%)
Query: 27  ILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQFS----CKFDPFLSYLAVN 82
           +L+SL  +E  ++P  SY + ++ R++   +R      +L+      C+ + F   LA+N
Sbjct: 41  VLQSLLRLEERYVPRASYFQCVQ-REIKPHMRKMLAYWMLEVCEEQRCEEEVF--PLAMN 97
Query: 83  YMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQIEFSYTQFQADGGLIFDTQTI---- 138
           Y+DRYLS   +P  K  +L+LL   C  LA+K+R+     T    +   I+    +    
Sbjct: 98  YLDRYLSC--VPTRKA-QLQLLGAVCMLLASKLRET----TPLTIEKLCIYTDHAVSPRQ 150
Query: 139 -QRMECLILGALKW 151
            +  E L+LG LKW
Sbjct: 151 LRDWEVLVLGKLKW 164
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 283 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 1e-34
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 4e-33
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 2e-26
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 1e-25
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 8e-24
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 8e-23
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 1e-22
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 1e-21
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 5e-07
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 2e-05
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 2e-04
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
 Score =  126 bits (319), Expect = 1e-34
 Identities = 52/247 (21%), Positives = 112/247 (45%), Gaps = 24/247 (9%)

Query: 18  DDDEDSTETILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQFSCKFD--PF 75
            D     + +L ++   E    PS SY K ++ +++  S+R    + +L+   +      
Sbjct: 18  PDANLLNDRVLRAMLKAEETCAPSVSYFKCVQ-KEVLPSMRKIVATWMLEVCEEQKCEEE 76

Query: 76  LSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQI------EFSYTQFQADG 129
           +  LA+NY+DR+LS + + +    +L+LL  +C  +A+KM++       +        D 
Sbjct: 77  VFPLAMNYLDRFLSLEPVKK---SRLQLLGATCMFVASKMKETIPLTAEKLCIY---TDN 130

Query: 130 GLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTVQRALKTRASEVIF 189
                 + + +ME L++  LKW + ++TP  F+  F+S     +   ++ ++  A   + 
Sbjct: 131 S--IRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAE-ENKQIIRKHAQTFVA 187

Query: 190 QAQIDIKLIEFKPSIIAASALLFASREL------FPLQFHCFRKAISNCPYVNKENLLRC 243
               D+K I   PS++AA +++ A + L        L ++   + +S     + + L  C
Sbjct: 188 LCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRAC 247

Query: 244 YNAMQDT 250
              ++  
Sbjct: 248 QEQIEAL 254
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query336
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 100.0
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 99.97
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 99.97
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.93
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.86
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.63
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.19
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 98.22
1ais_B200 TFB TFIIB, protein (transcription initiation facto 95.79
1c9b_A207 General transcription factor IIB; protein-DNA comp 94.82
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 92.14
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 87.19
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 84.33
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
Probab=100.00  E-value=2.4e-47  Score=352.65  Aligned_cols=239  Identities=23%  Similarity=0.287  Sum_probs=212.1

Q ss_pred             ccccHHHHHHHHHHHhhccCCCcchhhhccCCCCCHHHHHHHHHHHHhh--hcccChhHHHHHHHHHHHhhhccccCCCC
Q 019748           20 DEDSTETILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQF--SCKFDPFLSYLAVNYMDRYLSSQEMPQPK   97 (336)
Q Consensus        20 ~~~y~~ei~~~l~~~E~~~~p~~~yl~~~~~~~i~~~~R~~~vdWi~~v--~~~~~~~T~~lAv~~lDRfLs~~~v~~~~   97 (336)
                      +.+|++|||.+|++.|.++.|.++|++.  ++++++.||.++||||++|  +++++++|+++||+|||||++...+++.+
T Consensus         3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~--q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~   80 (260)
T 2cch_B            3 VPDYHEDIHTYLREMEVKCKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK   80 (260)
T ss_dssp             CCTTHHHHHHHHHHHHHHTCCCTTGGGG--CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHH
T ss_pred             hHhHHHHHHHHHHHHHhhcCCCchhhhc--CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHH
Confidence            5789999999999999999999999995  4689999999999999999  68999999999999999999999998877


Q ss_pred             cchhHHHHHHHHHHHHHhhccCcc-hhhhhhhcCCccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHccCCChHH
Q 019748           98 PWKLRLLAVSCFSLAAKMRQIEFS-YTQFQADGGLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTV  176 (336)
Q Consensus        98 ~~~lqLlavaCL~lAsK~eE~~~p-l~dl~~~~~~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~~~~~~~~~  176 (336)
                         +||+|+|||+||+|+||..+| +.||+......|++++|.+||+.||++|+|++++|||++|+.+|+..++.++.  
T Consensus        81 ---lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~--  155 (260)
T 2cch_B           81 ---LQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANC--  155 (260)
T ss_dssp             ---HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCH--
T ss_pred             ---HhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChH--
Confidence               999999999999999999877 89997666568999999999999999999999999999999999999887553  


Q ss_pred             HHHHHHHHHHHHHHHhcchh-hhCccHHHHHHHHHHHHHHHhCCCchhhhHHhchhcCCCCHhhHHHHHHHHHHhhcccc
Q 019748          177 QRALKTRASEVIFQAQIDIK-LIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCPYVNKENLLRCYNAMQDTSMDDE  255 (336)
Q Consensus       177 ~~~l~~~~~~l~~~~l~d~~-~l~~~PS~iAaAal~~a~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~~~~  255 (336)
                        .+...+.++++.++.++. |++|+||.||+|||++|+..++.   +.|.+.|..++|+++++|.+|++.|.++..   
T Consensus       156 --~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~---~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~---  227 (260)
T 2cch_B          156 --KVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG---QSWPESLIRKTGYTLESLKPCLMDLHQTYL---  227 (260)
T ss_dssp             --HHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS---CCSCHHHHHHHCCCHHHHHHHHHHHHHHHH---
T ss_pred             --HHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC---CcchHHHHHHhCcCHHHHHHHHHHHHHHHH---
Confidence              344566777778888999 99999999999999999998864   457788999999999999999999999876   


Q ss_pred             cccccccCCCCCCcccccccccccCC
Q 019748          256 YESEIDLVSSSYTPVNVLDCRVSSSG  281 (336)
Q Consensus       256 ~~~~~~~~~~p~sp~~vld~~~~s~~  281 (336)
                              ..+.++...+..+|++.+
T Consensus       228 --------~~~~~~~~~i~~Ky~~~~  245 (260)
T 2cch_B          228 --------KAPQHAQQSIREKYKNSK  245 (260)
T ss_dssp             --------HGGGSSCCHHHHHHTSGG
T ss_pred             --------hcCCcchHHHHHHHCccc
Confidence                    123446667777787655
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 336
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 3e-20
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 1e-19
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 6e-19
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 9e-18
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 4e-14
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 1e-10
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 9e-09
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 3e-07
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.7 bits (204), Expect = 3e-20
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 8/132 (6%)

Query: 27  ILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQFSCKFD--PFLSYLAVNYM 84
           I   L  +E    P   Y+K  K  D+ NS+R+  V  +++   ++       +LAVNY+
Sbjct: 2   IHTYLREMEVKCKPKVGYMK--KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 59

Query: 85  DRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQIEF-SYTQFQADGGLIFDTQTIQRMEC 143
           DR+LSS         KL+L+  +   LA+K  +I      +F       +  + + RME 
Sbjct: 60  DRFLSSM---SVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 116

Query: 144 LILGALKWRMRS 155
           L+L  L + + +
Sbjct: 117 LVLKVLTFDLAA 128
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query336
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 100.0
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.98
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.98
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.96
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.95
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.81
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.76
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.75
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.51
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 98.41
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 98.32
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 98.06
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.88
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 97.8
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 97.53
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.32
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.22
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.18
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.11
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 96.68
d1f5qb2106 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 95.15
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 95.06
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 92.28
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 90.24
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]

Probab=100.00  E-value=4.1e-33  Score=229.99  Aligned_cols=128  Identities=20%  Similarity=0.336  Sum_probs=120.3

Q ss_pred             cHHHHHHHHHHHhhccCCCcchhhhccCCCCCHHHHHHHHHHHHhh--hcccChhHHHHHHHHHHHhhhccccCCCCcch
Q 019748           23 STETILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQF--SCKFDPFLSYLAVNYMDRYLSSQEMPQPKPWK  100 (336)
Q Consensus        23 y~~ei~~~l~~~E~~~~p~~~yl~~~~~~~i~~~~R~~~vdWi~~v--~~~~~~~T~~lAv~~lDRfLs~~~v~~~~~~~  100 (336)
                      ++++|+++|++.|.+++|+++|+..+|. ++++.+|..+|+||.+|  .++++++|+|+||+|||||++...+++++   
T Consensus         2 ~~~~i~~~l~~~E~~~~p~~~y~~~~q~-~it~~~R~~lidWl~~v~~~~~l~~et~~lAv~llDrfls~~~v~~~~---   77 (132)
T d1g3nc1           2 CEDRIFYNILEIEPRFLTSDSVFGTFQQ-SLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEH---   77 (132)
T ss_dssp             HHHHHHHHHHHHGGGGCCCGGGHHHHTS-SCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHH---
T ss_pred             chHHHHHHHHHHHHHHCCChHHHHhcCc-cCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCcccCcHHH---
Confidence            6789999999999999999999998765 69999999999999999  68999999999999999999999998887   


Q ss_pred             hHHHHHHHHHHHHHhhccCcc-hhhhhhhcCCccCHHHHHHHHHHHHHHcCCccc
Q 019748          101 LRLLAVSCFSLAAKMRQIEFS-YTQFQADGGLIFDTQTIQRMECLILGALKWRMR  154 (336)
Q Consensus       101 lqLlavaCL~lAsK~eE~~~p-l~dl~~~~~~~~~~~~I~~mE~~IL~~L~w~l~  154 (336)
                      +||+|+|||+||+|+||..+| +.+++...++.|+.++|.+||+.||++|+|++.
T Consensus        78 lqLia~tcl~iAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~w~l~  132 (132)
T d1g3nc1          78 FQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTE  132 (132)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCC
Confidence            999999999999999999887 889977777789999999999999999999974
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1f5qb2 a.74.1.1 (B:147-252) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure