Citrus Sinensis ID: 019786

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
MWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEEKRQMKAA
cEEEEHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccEEEcEEEEEcccHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
cHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEHHHEEcccEEEEccccccHHHHHHHHHHHHHHHcccHEHHHHHHHHHHHHHHHHHHHHHHcccccHHHHEEHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcc
MWYFLNVIFNILNkriynyfpyPYFVSVIHLLVGVVYCLVSWAvglpkrapidskLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIwhyadqgenHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYskkamtdmdstNIYAYISIIALFvcippaiivegpqlIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFgnkistqtgIGTVIAIAGVAAYSYIKAQMEEEKRQMKAA
MWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEEKRQMKAA
MWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQtgigtviaiagvaaYSYIKAQMEEEKRQMKAA
*WYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK*************
MWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS****************
MWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQM**********
MWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEE********
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
iiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
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MWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEEKRQMKAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query336 2.2.26 [Sep-21-2011]
P11869404 Triose phosphate/phosphat N/A no 0.880 0.732 0.802 1e-153
Q9ZSR7410 Triose phosphate/phosphat yes no 0.883 0.724 0.791 1e-150
P21727402 Triose phosphate/phosphat N/A no 0.880 0.736 0.797 1e-150
P52177407 Triose phosphate/phosphat N/A no 0.883 0.729 0.782 1e-150
P49132407 Triose phosphate/phosphat N/A no 0.883 0.729 0.773 1e-148
P29463414 Triose phosphate/phosphat N/A no 0.883 0.717 0.773 1e-148
P49131408 Triose phosphate/phosphat N/A no 0.883 0.727 0.782 1e-147
Q9FTT3417 Triose phosphate/phosphat yes no 0.880 0.709 0.764 1e-146
P49133409 Triose phosphate/phosphat N/A no 0.880 0.723 0.752 1e-144
Q9M5A9388 Glucose-6-phosphate/phosp no no 0.830 0.719 0.388 2e-54
>sp|P11869|TPT_SPIOL Triose phosphate/phosphate translocator, chloroplastic OS=Spinacia oleracea PE=1 SV=1 Back     alignment and function desciption
 Score =  542 bits (1397), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 269/335 (80%), Positives = 286/335 (85%), Gaps = 39/335 (11%)

Query: 1   MWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLL 60
           MWYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCL SW+VGLPKRAP+DSKLLKLL
Sbjct: 108 MWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLASWSVGLPKRAPMDSKLLKLL 167

Query: 61  IPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLF 120
           IPVAVCHA+GHVTSNVSFAAVAVSFTHTIK                              
Sbjct: 168 IPVAVCHAIGHVTSNVSFAAVAVSFTHTIK------------------------------ 197

Query: 121 FIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFIS 180
                    ALEPFFNAAASQF+LGQ +P+TLWLSLAPVVIGVSMASLTELSFNW GFIS
Sbjct: 198 ---------ALEPFFNAAASQFVLGQSIPITLWLSLAPVVIGVSMASLTELSFNWLGFIS 248

Query: 181 AMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAI 240
           AMISN+SFTYRS+YSKKAMTDMDSTNIYAYISIIALFVC+PPAIIVEGPQL+KHG +DAI
Sbjct: 249 AMISNVSFTYRSLYSKKAMTDMDSTNIYAYISIIALFVCLPPAIIVEGPQLMKHGFNDAI 308

Query: 241 SKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNK 300
           +KVG+ KFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSI+AFGNK
Sbjct: 309 AKVGLTKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIIAFGNK 368

Query: 301 ISTQTGIGTVIAIAGVAAYSYIKAQMEEEKRQMKA 335
           ISTQT IGT IAIAGVA YS IKA+MEEEKRQMK+
Sbjct: 369 ISTQTAIGTSIAIAGVALYSLIKAKMEEEKRQMKS 403
Mediates the export of fixed carbons from the chloroplasts into the cytosol in the form of triose phosphates.
Spinacia oleracea (taxid: 3562)
>sp|Q9ZSR7|TPT_ARATH Triose phosphate/phosphate translocator TPT, chloroplastic OS=Arabidopsis thaliana GN=TPT PE=2 SV=1 Back     alignment and function description
>sp|P21727|TPT_PEA Triose phosphate/phosphate translocator, chloroplastic OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|P52177|TPT1_BRAOB Triose phosphate/phosphate translocator, chloroplastic OS=Brassica oleracea var. botrytis GN=TPT PE=2 SV=1 Back     alignment and function description
>sp|P49132|TPT_FLATR Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria trinervia GN=TPT PE=2 SV=1 Back     alignment and function description
>sp|P29463|TPT_SOLTU Triose phosphate/phosphate translocator, chloroplastic OS=Solanum tuberosum GN=TPT PE=2 SV=1 Back     alignment and function description
>sp|P49131|TPT_FLAPR Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria pringlei GN=TPT PE=2 SV=1 Back     alignment and function description
>sp|Q9FTT3|TPT_ORYSJ Triose phosphate/phosphate translocator TPT, chloroplastic OS=Oryza sativa subsp. japonica GN=TPT PE=2 SV=1 Back     alignment and function description
>sp|P49133|TPT_MAIZE Triose phosphate/phosphate translocator, chloroplastic OS=Zea mays GN=TPT PE=1 SV=1 Back     alignment and function description
>sp|Q9M5A9|GPT1_ARATH Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query336
224125582408 predicted protein [Populus trichocarpa] 0.883 0.727 0.815 1e-153
224077056408 predicted protein [Populus trichocarpa] 0.883 0.727 0.815 1e-152
225443598406 PREDICTED: triose phosphate/phosphate tr 0.883 0.731 0.809 1e-152
117291404 RecName: Full=Triose phosphate/phosphate 0.880 0.732 0.802 1e-152
255536723406 Triose phosphate/phosphate translocator, 0.883 0.731 0.809 1e-151
356548666406 PREDICTED: triose phosphate/phosphate tr 0.880 0.729 0.805 1e-151
147834373 443 hypothetical protein VITISV_028555 [Viti 0.869 0.659 0.812 1e-151
356521410429 PREDICTED: LOW QUALITY PROTEIN: triose p 0.880 0.689 0.802 1e-150
9295273404 triose phosphate/phosphate translocator 0.883 0.735 0.791 1e-150
449433798411 PREDICTED: triose phosphate/phosphate tr 0.883 0.722 0.797 1e-149
>gi|224125582|ref|XP_002329840.1| predicted protein [Populus trichocarpa] gi|222870902|gb|EEF08033.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 274/336 (81%), Positives = 287/336 (85%), Gaps = 39/336 (11%)

Query: 1   MWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLL 60
           MWYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCLVSWAVGLPKRAP+DS LLKLL
Sbjct: 112 MWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLVSWAVGLPKRAPMDSNLLKLL 171

Query: 61  IPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLF 120
           IPVAVCHALGHVTSNVSFAAVAVSFTHTIK                              
Sbjct: 172 IPVAVCHALGHVTSNVSFAAVAVSFTHTIK------------------------------ 201

Query: 121 FIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFIS 180
                    ALEPFFNAAASQFILGQQ+P+TLWLSLAPVV+GVS+ASLTELSFNWTGFIS
Sbjct: 202 ---------ALEPFFNAAASQFILGQQIPITLWLSLAPVVLGVSVASLTELSFNWTGFIS 252

Query: 181 AMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAI 240
           AMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIAL VCIPPAII+EGPQLIKHG SD I
Sbjct: 253 AMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALIVCIPPAIILEGPQLIKHGFSDGI 312

Query: 241 SKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNK 300
           +KVG+ KFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNK
Sbjct: 313 AKVGLTKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIVIFGNK 372

Query: 301 ISTQTGIGTVIAIAGVAAYSYIKAQMEEEKRQMKAA 336
           ISTQTGIGT +AIAGVA YSYIKA++EEEKRQ KAA
Sbjct: 373 ISTQTGIGTAVAIAGVATYSYIKAKLEEEKRQGKAA 408

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224077056|ref|XP_002305112.1| predicted protein [Populus trichocarpa] gi|222848076|gb|EEE85623.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225443598|ref|XP_002278829.1| PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic [Vitis vinifera] gi|297740430|emb|CBI30612.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|117291|sp|P11869.1|TPT_SPIOL RecName: Full=Triose phosphate/phosphate translocator, chloroplastic; Short=cTPT; AltName: Full=E29; AltName: Full=p36; Flags: Precursor gi|21274|emb|CAA32016.1| unnamed protein product [Spinacia oleracea] Back     alignment and taxonomy information
>gi|255536723|ref|XP_002509428.1| Triose phosphate/phosphate translocator, chloroplast precursor, putative [Ricinus communis] gi|223549327|gb|EEF50815.1| Triose phosphate/phosphate translocator, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356548666|ref|XP_003542721.1| PREDICTED: triose phosphate/phosphate translocator, chloroplastic [Glycine max] Back     alignment and taxonomy information
>gi|147834373|emb|CAN65381.1| hypothetical protein VITISV_028555 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356521410|ref|XP_003529349.1| PREDICTED: LOW QUALITY PROTEIN: triose phosphate/phosphate translocator, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|9295273|gb|AAF86906.1|AF223358_1 triose phosphate/phosphate translocator precursor [Mesembryanthemum crystallinum] Back     alignment and taxonomy information
>gi|449433798|ref|XP_004134684.1| PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query336
TAIR|locus:2161423415 APE2 "ACCLIMATION OF PHOTOSYNT 0.601 0.486 0.826 3.7e-133
TAIR|locus:2160175388 GPT1 "glucose 6-phosphate/phos 0.559 0.484 0.395 1.3e-57
TAIR|locus:2036778388 GPT2 "glucose-6-phosphate/phos 0.559 0.484 0.395 3.3e-57
TAIR|locus:2151381417 AT5G17630 "AT5G17630" [Arabido 0.592 0.477 0.382 5.4e-53
UNIPROTKB|Q84QU8407 PPT2 "Phosphoenolpyruvate/phos 0.619 0.511 0.374 8.7e-51
UNIPROTKB|Q69VR7408 PPT1 "Phosphoenolpyruvate/phos 0.625 0.514 0.336 2.9e-48
TAIR|locus:2084203383 PPT2 "phosphoenolpyruvate (pep 0.633 0.556 0.368 8.6e-47
TAIR|locus:2145944408 CUE1 "CAB UNDEREXPRESSED 1" [A 0.619 0.509 0.315 9.6e-44
UNIPROTKB|Q5VQL3393 PPT3 "Phosphoenolpyruvate/phos 0.625 0.534 0.327 4.6e-42
GENEDB_PFALCIPARUM|PFE0410w342 PFE0410w "triose or hexose pho 0.586 0.576 0.318 4.5e-38
TAIR|locus:2161423 APE2 "ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 864 (309.2 bits), Expect = 3.7e-133, Sum P(2) = 3.7e-133
 Identities = 167/202 (82%), Positives = 181/202 (89%)

Query:   130 ALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFT 189
             ALEPFFNAAASQFI+GQ +P+TLWLSLAPVV+GV+MASLTELSFNW GFISAMISNISFT
Sbjct:   204 ALEPFFNAAASQFIMGQSIPITLWLSLAPVVLGVAMASLTELSFNWLGFISAMISNISFT 263

Query:   190 YRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFI 249
             YRSI+SKKAMTDMDSTN+YAYISIIALFVCIPPAIIVEGP+L+ HG +DAI+KVGM KFI
Sbjct:   264 YRSIFSKKAMTDMDSTNVYAYISIIALFVCIPPAIIVEGPKLLNHGFADAIAKVGMTKFI 323

Query:   250 SDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXX 309
             SDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNKISTQ     
Sbjct:   324 SDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIVIFGNKISTQTGIGT 383

Query:   310 XXXXXXXXXYSYIKAQMEEEKR 331
                      YS IKA++EEEKR
Sbjct:   384 GIAIAGVAMYSIIKAKIEEEKR 405
GO:0005215 "transporter activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0006810 "transport" evidence=IEA
GO:0015297 "antiporter activity" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0015120 "phosphoglycerate transmembrane transporter activity" evidence=IDA
GO:0015713 "phosphoglycerate transport" evidence=IDA
GO:0015717 "triose phosphate transport" evidence=IMP
GO:0035436 "triose phosphate transmembrane transport" evidence=IDA
GO:0071917 "triose-phosphate transmembrane transporter activity" evidence=IMP;IDA
GO:0009643 "photosynthetic acclimation" evidence=IMP
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0019684 "photosynthesis, light reaction" evidence=RCA
GO:0035304 "regulation of protein dephosphorylation" evidence=RCA
TAIR|locus:2160175 GPT1 "glucose 6-phosphate/phosphate translocator 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036778 GPT2 "glucose-6-phosphate/phosphate translocator 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151381 AT5G17630 "AT5G17630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q84QU8 PPT2 "Phosphoenolpyruvate/phosphate translocator 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q69VR7 PPT1 "Phosphoenolpyruvate/phosphate translocator 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2084203 PPT2 "phosphoenolpyruvate (pep)/phosphate translocator 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145944 CUE1 "CAB UNDEREXPRESSED 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VQL3 PPT3 "Phosphoenolpyruvate/phosphate translocator 3, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFE0410w PFE0410w "triose or hexose phosphate / phosphate translocator, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P11869TPT_SPIOLNo assigned EC number0.80290.88090.7326N/Ano
Q9ZSR7TPT_ARATHNo assigned EC number0.79160.88390.7243yesno
P29463TPT_SOLTUNo assigned EC number0.77380.88390.7173N/Ano
P52177TPT1_BRAOBNo assigned EC number0.78270.88390.7297N/Ano
P21727TPT_PEANo assigned EC number0.79700.88090.7363N/Ano
P49131TPT_FLAPRNo assigned EC number0.78270.88390.7279N/Ano
P49133TPT_MAIZENo assigned EC number0.75220.88090.7237N/Ano
P49132TPT_FLATRNo assigned EC number0.77380.88390.7297N/Ano
Q9FTT3TPT_ORYSJNo assigned EC number0.76410.88090.7098yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_1240222
hypothetical protein (408 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
TIGR00817302 TIGR00817, tpt, Tpt phosphate/phosphoenolpyruvate 1e-131
PTZ00343350 PTZ00343, PTZ00343, triose or hexose phosphate/pho 2e-59
pfam03151149 pfam03151, TPT, Triose-phosphate Transporter famil 2e-32
>gnl|CDD|129898 TIGR00817, tpt, Tpt phosphate/phosphoenolpyruvate translocator Back     alignment and domain information 
 Score =  374 bits (963), Expect = e-131
 Identities = 178/333 (53%), Positives = 215/333 (64%), Gaps = 42/333 (12%)

Query: 1   MWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLL 60
           +WYFLNV FNI NK++ N FPYPYF ++I L VG +YCL+SW+ GLPKR  I S LLKLL
Sbjct: 9   LWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLL 68

Query: 61  IPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLF 120
           +PVA+ H +GHVTSNVS + VAVSFTHTIK                              
Sbjct: 69  LPVAIVHTIGHVTSNVSLSKVAVSFTHTIK------------------------------ 98

Query: 121 FIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFIS 180
                    A+EPFF+   S F LGQ+ P TLWLSL P+V GV++AS TELSFNW GF+S
Sbjct: 99  ---------AMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLS 149

Query: 181 AMISNISFTYRSIYSKKAMT--DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSD 238
           AMISNI+F  R+I+SKKAMT   +D TN+YAYISI++LF+  PPA I EGP  + HG   
Sbjct: 150 AMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQ 209

Query: 239 AISKVGMVKFISDLFWVGM-FYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAF 297
           AIS V + K  +      M F+H Y Q+A   L RV+PLTH+VGN +KRV VI  SIL F
Sbjct: 210 AISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFF 269

Query: 298 GNKISTQTGIGTVIAIAGVAAYSYIKAQMEEEK 330
           G KIS Q   GT IAIAGV  YS +KAQ  + K
Sbjct: 270 GTKISPQQVFGTGIAIAGVFLYSRVKAQKPKPK 302

The 6-8 TMS Triose-phosphate Transporter (TPT) Family (TC 2.A.7.9)Functionally characterized members of the TPT family are derived from the inner envelope membranes of chloroplasts and nongreen plastids of plants. However,homologues are also present in yeast. Saccharomyces cerevisiae has three functionally uncharacterized TPT paralogues encoded within its genome. Under normal physiologicalconditions, chloroplast TPTs mediate a strict antiport of substrates, frequently exchanging an organic three carbon compound phosphate ester for inorganic phosphate (Pi).Normally, a triose-phosphate, 3-phosphoglycerate, or another phosphorylated C3 compound made in the chloroplast during photosynthesis, exits the organelle into thecytoplasm of the plant cell in exchange for Pi. However, experiments with reconstituted translocator in artificial membranes indicate that transport can also occur by achannel-like uniport mechanism with up to 10-fold higher transport rates. Channel opening may be induced by a membrane potential of large magnitude and/or by high substrateconcentrations. Nongreen plastid and chloroplast carriers, such as those from maize endosperm and root membranes, mediate transport of C3 compounds phosphorylated atcarbon atom 2, particularly phosphenolpyruvate, in exchange for Pi. These are the phosphoenolpyruvate:Pi antiporters (PPT). Glucose-6-P has also been shown to be asubstrate of some plastid translocators (GPT). The three types of proteins (TPT, PPT and GPT) are divergent in sequence as well as substrate specificity, but their substratespecificities overlap [Hypothetical proteins, Conserved]. Length = 302
>gnl|CDD|240371 PTZ00343, PTZ00343, triose or hexose phosphate/phosphate translocator; Provisional Back     alignment and domain information
>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 336
TIGR00817302 tpt Tpt phosphate/phosphoenolpyruvate translocator 100.0
PTZ00343350 triose or hexose phosphate/phosphate translocator; 100.0
KOG1441316 consensus Glucose-6-phosphate/phosphate and phosph 100.0
KOG1443349 consensus Predicted integral membrane protein [Fun 99.94
PLN00411358 nodulin MtN21 family protein; Provisional 99.94
KOG1444314 consensus Nucleotide-sugar transporter VRG4/SQV-7 99.93
TIGR00950260 2A78 Carboxylate/Amino Acid/Amine Transporter. 99.93
PRK11689295 aromatic amino acid exporter; Provisional 99.93
PRK11272292 putative DMT superfamily transporter inner membran 99.93
PF08449303 UAA: UAA transporter family; InterPro: IPR013657 T 99.92
PRK10532293 threonine and homoserine efflux system; Provisiona 99.91
PRK11453299 O-acetylserine/cysteine export protein; Provisiona 99.91
KOG1442347 consensus GDP-fucose transporter [Carbohydrate tra 99.91
PRK15430296 putative chloramphenical resistance permease RarD; 99.9
PF06027334 DUF914: Eukaryotic protein of unknown function (DU 99.9
TIGR03340281 phn_DUF6 phosphonate utilization associated putati 99.85
COG0697292 RhaT Permeases of the drug/metabolite transporter 99.82
COG5006292 rhtA Threonine/homoserine efflux transporter [Amin 99.81
TIGR00688256 rarD rarD protein. This uncharacterized protein is 99.79
COG5070309 VRG4 Nucleotide-sugar transporter [Carbohydrate tr 99.78
TIGR00776290 RhaT RhaT L-rhamnose-proton symporter family prote 99.71
PF03151153 TPT: Triose-phosphate Transporter family; InterPro 99.69
KOG1581327 consensus UDP-galactose transporter related protei 99.69
KOG1580337 consensus UDP-galactose transporter related protei 99.67
PF04142244 Nuc_sug_transp: Nucleotide-sugar transporter; Inte 99.66
KOG4510346 consensus Permease of the drug/metabolite transpor 99.63
COG2962293 RarD Predicted permeases [General function predict 99.6
KOG2765416 consensus Predicted membrane protein [Function unk 99.58
KOG2234345 consensus Predicted UDP-galactose transporter [Car 99.55
KOG1583330 consensus UDP-N-acetylglucosamine transporter [Car 99.45
KOG1582367 consensus UDP-galactose transporter related protei 99.45
KOG3912372 consensus Predicted integral membrane protein [Gen 99.37
KOG2766336 consensus Predicted membrane protein [Function unk 99.16
PF00892126 EamA: EamA-like transporter family; InterPro: IPR0 99.1
PF00892126 EamA: EamA-like transporter family; InterPro: IPR0 99.04
TIGR00803222 nst UDP-galactose transporter. NSTs generally appe 99.04
COG2510140 Predicted membrane protein [Function unknown] 99.03
PF06800269 Sugar_transport: Sugar transport protein; InterPro 98.93
KOG4314290 consensus Predicted carbohydrate/phosphate translo 98.79
COG2510140 Predicted membrane protein [Function unknown] 98.79
PF13536113 EmrE: Multidrug resistance efflux transporter 98.79
PRK15430 296 putative chloramphenical resistance permease RarD; 98.78
TIGR00688256 rarD rarD protein. This uncharacterized protein is 98.72
TIGR03340 281 phn_DUF6 phosphonate utilization associated putati 98.61
PLN00411 358 nodulin MtN21 family protein; Provisional 98.45
TIGR00950260 2A78 Carboxylate/Amino Acid/Amine Transporter. 98.35
PF05653300 Mg_trans_NIPA: Magnesium transporter NIPA; InterPr 98.16
PRK11689 295 aromatic amino acid exporter; Provisional 98.12
PTZ00343 350 triose or hexose phosphate/phosphate translocator; 98.11
PRK11272 292 putative DMT superfamily transporter inner membran 98.07
PRK11453 299 O-acetylserine/cysteine export protein; Provisiona 98.03
PRK02971129 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl 98.03
PRK15051111 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl 97.97
TIGR00817 302 tpt Tpt phosphate/phosphoenolpyruvate translocator 97.93
COG2962 293 RarD Predicted permeases [General function predict 97.79
PRK10532293 threonine and homoserine efflux system; Provisiona 97.78
PF13536113 EmrE: Multidrug resistance efflux transporter 97.67
PRK13499345 rhamnose-proton symporter; Provisional 97.65
TIGR00776 290 RhaT RhaT L-rhamnose-proton symporter family prote 97.6
COG0697 292 RhaT Permeases of the drug/metabolite transporter 97.39
PRK15051111 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl 97.32
PF08449 303 UAA: UAA transporter family; InterPro: IPR013657 T 97.28
COG4975288 GlcU Putative glucose uptake permease [Carbohydrat 97.22
PF03151153 TPT: Triose-phosphate Transporter family; InterPro 97.13
PRK02971129 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl 97.07
KOG2922335 consensus Uncharacterized conserved protein [Funct 97.06
PF04142 244 Nuc_sug_transp: Nucleotide-sugar transporter; Inte 96.93
PF06027 334 DUF914: Eukaryotic protein of unknown function (DU 96.91
PRK10452120 multidrug efflux system protein MdtJ; Provisional 96.77
PF04657138 DUF606: Protein of unknown function, DUF606; Inter 96.62
PRK10452120 multidrug efflux system protein MdtJ; Provisional 96.62
PRK10650109 multidrug efflux system protein MdtI; Provisional 96.53
PRK09541110 emrE multidrug efflux protein; Reviewed 96.49
PRK11431105 multidrug efflux system protein; Provisional 96.38
PRK09541110 emrE multidrug efflux protein; Reviewed 96.37
COG2076106 EmrE Membrane transporters of cations and cationic 96.27
PRK10650109 multidrug efflux system protein MdtI; Provisional 96.19
COG2076106 EmrE Membrane transporters of cations and cationic 96.03
PRK11431105 multidrug efflux system protein; Provisional 95.95
PRK13499 345 rhamnose-proton symporter; Provisional 95.78
PF05653 300 Mg_trans_NIPA: Magnesium transporter NIPA; InterPr 95.19
PF0089393 Multi_Drug_Res: Small Multidrug Resistance protein 94.82
PF04657138 DUF606: Protein of unknown function, DUF606; Inter 94.76
COG5006292 rhtA Threonine/homoserine efflux transporter [Amin 94.39
KOG2234 345 consensus Predicted UDP-galactose transporter [Car 94.11
PF06800269 Sugar_transport: Sugar transport protein; InterPro 94.1
COG3238150 Uncharacterized protein conserved in bacteria [Fun 94.04
PF07857 254 DUF1632: CEO family (DUF1632); InterPro: IPR012435 93.91
PF0089393 Multi_Drug_Res: Small Multidrug Resistance protein 93.46
TIGR00803222 nst UDP-galactose transporter. NSTs generally appe 92.17
PF10639113 UPF0546: Uncharacterised protein family UPF0546; I 91.53
KOG2765 416 consensus Predicted membrane protein [Function unk 90.85
KOG4314 290 consensus Predicted carbohydrate/phosphate translo 90.45
KOG4510 346 consensus Permease of the drug/metabolite transpor 89.36
PF06379 344 RhaT: L-rhamnose-proton symport protein (RhaT); In 88.39
KOG1444 314 consensus Nucleotide-sugar transporter VRG4/SQV-7 82.77
COG3238150 Uncharacterized protein conserved in bacteria [Fun 82.27
PF10639113 UPF0546: Uncharacterised protein family UPF0546; I 81.86
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator Back     alignment and domain information 
Probab=100.00  E-value=3.4e-38  Score=299.14  Aligned_cols=284  Identities=62%  Similarity=1.008  Sum_probs=241.0

Q ss_pred             CeeehHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 019786            1 MWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAA   80 (336)
Q Consensus         1 ~w~~~s~~~~i~nK~~~~~f~~p~~l~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~   80 (336)
                      +||++|+..+++||+.++++++|..++++|+.++.+.+.+.+..+.+++.+.++++++++++.|++++.++.+.|.++++
T Consensus         9 ~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~   88 (302)
T TIGR00817         9 LWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSK   88 (302)
T ss_pred             HHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            49999999999999999999999999999999998877666544455566778999999999999999999999999999


Q ss_pred             cchhhhhhhccccccccccCchhHHHHHHHHhhhhhhhhHHHHHhhhhcchhhHHHHHHHHHHhcCcCChhhHHHHHHHh
Q 019786           81 VAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVV  160 (336)
Q Consensus        81 ~~vs~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~~~~~~l~l~~~~~~~~~~sl~~~~  160 (336)
                      ++++++++++                                       ++.|+++++++++++|||++++++.++++++
T Consensus        89 ~s~s~~~li~---------------------------------------~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~  129 (302)
T TIGR00817        89 VAVSFTHTIK---------------------------------------AMEPFFSVVLSAFFLGQEFPSTLWLSLLPIV  129 (302)
T ss_pred             ccHHHHHHHH---------------------------------------hcchHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence            9999999999                                       9999999999999999999999999999999


Q ss_pred             hhheeeecccccccHHHHHHHHHHHHHHHHHHHHHhhhhc--CCChhhHHHHHHHHHHHHHHHHHHHhhCchhhhccchh
Q 019786          161 IGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMT--DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSD  238 (336)
Q Consensus       161 ~Gv~l~~~~~~~~~~~G~l~~l~s~~~~a~~~v~~k~~~~--~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  238 (336)
                      +|+.+...++.+++..|++++++|++++++++++.||..+  +.|+.+++.|+...+.+.+.|.....|++....+++.+
T Consensus       130 ~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~  209 (302)
T TIGR00817       130 GGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQ  209 (302)
T ss_pred             HHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHH
Confidence            9999887777778888999999999999999999999988  89999999999999999999998777754332211111


Q ss_pred             hhhhhchHHHHHHHHHHHH-HHHHHHHHHHhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhHHHHHHHHHHH
Q 019786          239 AISKVGMVKFISDLFWVGM-FYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVA  317 (336)
Q Consensus       239 ~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~l~~~s~~~~si~~~l~~v~~~i~~~~~fge~~s~~~~~G~~li~~gv~  317 (336)
                      ..........+...+..+. .....|...+..+++++|.+.++.+.+||+.++++|++++||++|..+++|.+++++|+.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~  289 (302)
T TIGR00817       210 AISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVF  289 (302)
T ss_pred             hhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHH
Confidence            0000111122322333333 344566677789999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhhh
Q 019786          318 AYSYIK  323 (336)
Q Consensus       318 ~~~~~~  323 (336)
                      +|+..|
T Consensus       290 l~~~~k  295 (302)
T TIGR00817       290 LYSRVK  295 (302)
T ss_pred             HHHHHh
Confidence            998643

specificities overlap.
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional Back     alignment and domain information
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>KOG1443 consensus Predicted integral membrane protein [Function unknown] Back     alignment and domain information
>PLN00411 nodulin MtN21 family protein; Provisional Back     alignment and domain information
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter Back     alignment and domain information
>PRK11689 aromatic amino acid exporter; Provisional Back     alignment and domain information
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional Back     alignment and domain information
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine [] Back     alignment and domain information
>PRK10532 threonine and homoserine efflux system; Provisional Back     alignment and domain information
>PRK11453 O-acetylserine/cysteine export protein; Provisional Back     alignment and domain information
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK15430 putative chloramphenical resistance permease RarD; Provisional Back     alignment and domain information
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function Back     alignment and domain information
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein Back     alignment and domain information
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00688 rarD rarD protein Back     alignment and domain information
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein Back     alignment and domain information
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins Back     alignment and domain information
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles Back     alignment and domain information
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only] Back     alignment and domain information
>COG2962 RarD Predicted permeases [General function prediction only] Back     alignment and domain information
>KOG2765 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3912 consensus Predicted integral membrane protein [General function prediction only] Back     alignment and domain information
>KOG2766 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown Back     alignment and domain information
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown Back     alignment and domain information
>TIGR00803 nst UDP-galactose transporter Back     alignment and domain information
>COG2510 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long Back     alignment and domain information
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only] Back     alignment and domain information
>COG2510 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF13536 EmrE: Multidrug resistance efflux transporter Back     alignment and domain information
>PRK15430 putative chloramphenical resistance permease RarD; Provisional Back     alignment and domain information
>TIGR00688 rarD rarD protein Back     alignment and domain information
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein Back     alignment and domain information
>PLN00411 nodulin MtN21 family protein; Provisional Back     alignment and domain information
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter Back     alignment and domain information
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PRK11689 aromatic amino acid exporter; Provisional Back     alignment and domain information
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional Back     alignment and domain information
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional Back     alignment and domain information
>PRK11453 O-acetylserine/cysteine export protein; Provisional Back     alignment and domain information
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional Back     alignment and domain information
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional Back     alignment and domain information
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator Back     alignment and domain information
>COG2962 RarD Predicted permeases [General function prediction only] Back     alignment and domain information
>PRK10532 threonine and homoserine efflux system; Provisional Back     alignment and domain information
>PF13536 EmrE: Multidrug resistance efflux transporter Back     alignment and domain information
>PRK13499 rhamnose-proton symporter; Provisional Back     alignment and domain information
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein Back     alignment and domain information
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional Back     alignment and domain information
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine [] Back     alignment and domain information
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins Back     alignment and domain information
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional Back     alignment and domain information
>KOG2922 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles Back     alignment and domain information
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function Back     alignment and domain information
>PRK10452 multidrug efflux system protein MdtJ; Provisional Back     alignment and domain information
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins Back     alignment and domain information
>PRK10452 multidrug efflux system protein MdtJ; Provisional Back     alignment and domain information
>PRK10650 multidrug efflux system protein MdtI; Provisional Back     alignment and domain information
>PRK09541 emrE multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK11431 multidrug efflux system protein; Provisional Back     alignment and domain information
>PRK09541 emrE multidrug efflux protein; Reviewed Back     alignment and domain information
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10650 multidrug efflux system protein MdtI; Provisional Back     alignment and domain information
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11431 multidrug efflux system protein; Provisional Back     alignment and domain information
>PRK13499 rhamnose-proton symporter; Provisional Back     alignment and domain information
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins Back     alignment and domain information
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins Back     alignment and domain information
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long Back     alignment and domain information
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function Back     alignment and domain information
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins Back     alignment and domain information
>TIGR00803 nst UDP-galactose transporter Back     alignment and domain information
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function Back     alignment and domain information
>KOG2765 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only] Back     alignment and domain information
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only] Back     alignment and domain information
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family Back     alignment and domain information
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query336
2i68_A137 Protein EMRE; transmembrane protein, small-multidr 98.03
3b5d_A110 Multidrug transporter EMRE; helical membrane prote 97.99
2i68_A137 Protein EMRE; transmembrane protein, small-multidr 97.82
3b5d_A110 Multidrug transporter EMRE; helical membrane prote 97.62
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli} Back     alignment and structure
Probab=98.03  E-value=1.2e-05  Score=66.69  Aligned_cols=59  Identities=20%  Similarity=0.198  Sum_probs=41.2

Q ss_pred             HHHhHhhccChhHHHHH-HHHHHHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHhhhhh
Q 019786          265 LATNTLERVAPLTHAVG-NVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK  323 (336)
Q Consensus       265 ~~~~~l~~~s~~~~si~-~~l~~v~~~i~~~~~fge~~s~~~~~G~~li~~gv~~~~~~~  323 (336)
                      ....++++.++...... ..+.|+++.++|+++|||++|..+++|++++++|+.+.+..+
T Consensus        46 l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            34567899999877666 899999999999999999999999999999999999887643
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A* Back     alignment and structure
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli} Back     alignment and structure
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00