Citrus Sinensis ID: 019801

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
MGGGAGAHDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDVNIEEEMRRKQAHAQEAYEEDEDMPGGAQRVQCAQQ
ccccccccccHHHHHHHcccccccccccccccccccccEEEEEEEEHHHHHcccEEEEEEEEEEEccccccccccccccccccccccccEEEEEEEEccccEEEEEEEccccccEEEEEccccccccccccEEEEEEEEEEEEEccccccccEEEEccccccccccccccEEEEEEEccccccEEEcccEEEEEEccHHHHccccEEEEEcccccEEEEEEccccccccccEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHccccccccccccccccEEEEEcccccHHHHHHHHHHHccccccccccccccccccccccc
cccccccccHHHHHHHHcccccccccccccccccccccEEEEEEEEHHHHHcccEEEEEEcccEEccccccccccccccccccccccccEEEEEEcccccHEEEEEccccccccccEEEccccccccccccEEEEEEEEEEEEEccccccccEEEEEcccccccccccccEEEEEEEcccccEEEccccEEEEEEEEHHHHHcccEEEEEcccccEEEEEEccccEEccccEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHccccccccccccccccccEEEEEcccHHHHHHHcccccccccccccccccccccEEEccc
mgggagahdpfdifssffggspfgggssrgrrqrrgedvvhplKVSLEDLylgtskklslsrnvicskcsgkgsksgasmkcsgcqgtgmkvsirhlgpsmiqqmqhpcneckgtgetindkdrcpqckgdkvvqEKKVLEVIVEKGmqngqkitfpgeadeapdtvtGDIVFVLQqkehpkfkrkgedLFYEHTLSLTEALCGFQFAlthldgrqlliksnpgevvkpdsykaineegmplyqrpfmkgklyihftvefpdsltpDQVKALEAilpsrplsgmtdmeldeceettlhdvNIEEEMRRKQAHAQEayeededmpggaqrVQCAQQ
mgggagahDPFDIFSSFFGGSPFGggssrgrrqrrgedvvhplkvsledlylgtskklslsrnvICSKcsgkgsksgasmKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTgetindkdrcpqckgdkvvqeKKVLEVIVEKgmqngqkitfpgeadeapdTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIksnpgevvkpdsykaineegmpLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDVNIEEEMRRKQAHAQEayeededmpgGAQRVQCAQQ
MGGGAGAHDPFDIfssffggspfgggssrgrrqrrgEDVVHPLKVSLEDLYLGTSKKLSLSRNVIcskcsgkgsksgasmkcsgcQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDVNIEEEMRRKQAHAQEAYEEDEDMPGGAQRVQCAQQ
************IFSSFF*********************VHPLKVSLEDLYLGTSKKLSLSRNVICSK*************************I********************************QCKGDKVVQEKKVLEVIVEKGMQ****ITF********DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAI************************************************************
************IFSSF*************************LKVSLEDLYLGTSKKLSLSRNVICSKCSG**********CSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEA*****************CEETTL**************************************
MGGGAGAHDPFDIFSSFFGGSPFG*************DVVHPLKVSLEDLYLGTSKKLSLSRNVICSKC***************CQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDVNIEEE******************************
*******HDPFDIFSSFFGGSPF***********RGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKG**S*ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDVNIEEE******************************
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MGGGAGAHDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDVNIEEEMRRKQAHAQEAYEEDEDMPGGAQRVQCAQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query335 2.2.26 [Sep-21-2011]
P43644417 DnaJ protein homolog ANJ1 N/A no 0.976 0.784 0.887 1e-163
P42825419 Chaperone protein dnaJ 2 yes no 0.976 0.780 0.803 1e-157
Q04960413 DnaJ protein homolog OS=C N/A no 0.973 0.789 0.866 1e-155
Q94AW8420 Chaperone protein dnaJ 3 no no 0.979 0.780 0.833 1e-153
P42824418 DnaJ protein homolog 2 OS N/A no 0.982 0.787 0.827 1e-151
Q03363397 DnaJ protein homolog 1 (F N/A no 0.979 0.826 0.821 1e-149
Q2HJ94412 DnaJ homolog subfamily A yes no 0.847 0.689 0.530 2e-83
P63036397 DnaJ homolog subfamily A yes no 0.922 0.778 0.504 2e-83
P63037397 DnaJ homolog subfamily A yes no 0.922 0.778 0.504 2e-83
P31689397 DnaJ homolog subfamily A yes no 0.922 0.778 0.504 2e-83
>sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1 OS=Atriplex nummularia PE=2 SV=1 Back     alignment and function desciption
 Score =  575 bits (1483), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 293/330 (88%), Positives = 310/330 (93%), Gaps = 3/330 (0%)

Query: 8   HDPFDIFSSFFGGSPFGG-GSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVIC 66
           HDPFDIF SFFGGSPFGG GSSRGRRQRRGEDVVHPLKVSLEDL+ GT+KKLSLSRNVIC
Sbjct: 89  HDPFDIFQSFFGGSPFGGVGSSRGRRQRRGEDVVHPLKVSLEDLFTGTTKKLSLSRNVIC 148

Query: 67  SKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCP 126
           SKC+GKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCP
Sbjct: 149 SKCTGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCP 208

Query: 127 QCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRK 186
           QCKG+KVVQEKKVLEV+VEKGMQ+GQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRK
Sbjct: 209 QCKGEKVVQEKKVLEVVVEKGMQHGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRK 268

Query: 187 GEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRP 246
           GEDLFYEHTLSLTEALCGF+F LTHLDGRQLLIKSN GEVVKPD +KAI +EGMP+YQRP
Sbjct: 269 GEDLFYEHTLSLTEALCGFRFVLTHLDGRQLLIKSNLGEVVKPDQFKAIEDEGMPIYQRP 328

Query: 247 FMKGKLYIHFTVEFPDSLTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDVNIEEEM 306
           FMKGK+YIHFTVEFPDSL PDQVK+LEAILP +P   +T MELDECEETTLH+VNIEEEM
Sbjct: 329 FMKGKMYIHFTVEFPDSLNPDQVKSLEAILPPKPSMSLTYMELDECEETTLHNVNIEEEM 388

Query: 307 RRKQAHA-QEAYEEDEDMPGGAQRVQCAQQ 335
           +RKQ  A QEAY+ED D P G QRVQCAQQ
Sbjct: 389 KRKQTQAQQEAYDED-DEPAGGQRVQCAQQ 417
Have a continuous role in plant development probably in the structural organization of compartments.
Atriplex nummularia (taxid: 3553)
>sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 OS=Arabidopsis thaliana GN=ATJ2 PE=1 SV=2 Back     alignment and function description
>sp|Q04960|DNJH_CUCSA DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1 Back     alignment and function description
>sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 OS=Arabidopsis thaliana GN=ATJ3 PE=1 SV=2 Back     alignment and function description
>sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE=2 SV=1 Back     alignment and function description
>sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (Fragment) OS=Allium porrum GN=DNAJ1 PE=2 SV=1 Back     alignment and function description
>sp|Q2HJ94|DNJA2_BOVIN DnaJ homolog subfamily A member 2 OS=Bos taurus GN=DNAJA2 PE=2 SV=1 Back     alignment and function description
>sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 OS=Rattus norvegicus GN=Dnaja1 PE=2 SV=1 Back     alignment and function description
>sp|P63037|DNJA1_MOUSE DnaJ homolog subfamily A member 1 OS=Mus musculus GN=Dnaja1 PE=1 SV=1 Back     alignment and function description
>sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 OS=Homo sapiens GN=DNAJA1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query335
351724545417 seed maturation protein PM37 [Glycine ma 0.979 0.786 0.881 1e-162
1169384417 RecName: Full=DnaJ protein homolog ANJ1; 0.976 0.784 0.887 1e-162
363814581410 uncharacterized protein LOC100808604 [Gl 0.964 0.787 0.902 1e-161
449442633413 PREDICTED: dnaJ protein homolog [Cucumis 0.973 0.789 0.911 1e-161
225464824417 PREDICTED: dnaJ protein homolog [Vitis v 0.979 0.786 0.878 1e-160
161137763417 DnaJ [Viola baoshanensis] 0.979 0.786 0.875 1e-160
449518563311 PREDICTED: dnaJ protein homolog, partial 0.886 0.954 0.906 1e-158
224104629415 predicted protein [Populus trichocarpa] 0.976 0.787 0.887 1e-158
357453279417 DnaJ [Medicago truncatula] gi|355485964| 0.979 0.786 0.869 1e-158
357471393413 DnaJ [Medicago truncatula] gi|355507036| 0.964 0.782 0.893 1e-157
>gi|351724545|ref|NP_001238341.1| seed maturation protein PM37 [Glycine max] gi|5802244|gb|AAD51625.1|AF169022_1 seed maturation protein PM37 [Glycine max] Back     alignment and taxonomy information
 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 291/330 (88%), Positives = 305/330 (92%), Gaps = 2/330 (0%)

Query: 8   HDPFDIFSSFFGGSPFGGGSSRGRRQRRG--EDVVHPLKVSLEDLYLGTSKKLSLSRNVI 65
           HDPFDIFSSFFGG    G     R +R+   EDVVHPLKVSLEDLYLGTSKKLSLSRNVI
Sbjct: 88  HDPFDIFSSFFGGGSPFGSGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVI 147

Query: 66  CSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRC 125
           CSKCSGKGSKSGASMKC+GCQGTGMKVSIRHLGPSMIQQMQH CNECKGTGETIND+DRC
Sbjct: 148 CSKCSGKGSKSGASMKCAGCQGTGMKVSIRHLGPSMIQQMQHACNECKGTGETINDRDRC 207

Query: 126 PQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKR 185
           PQCKG+KVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDT+TGDIVFVLQQKEHPKFKR
Sbjct: 208 PQCKGEKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTITGDIVFVLQQKEHPKFKR 267

Query: 186 KGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQR 245
           K EDLF EHTLSLTEALCGFQF LTHLD RQLLIKSNPGEVVKPDSYKAIN+EGMP+YQR
Sbjct: 268 KAEDLFVEHTLSLTEALCGFQFVLTHLDSRQLLIKSNPGEVVKPDSYKAINDEGMPMYQR 327

Query: 246 PFMKGKLYIHFTVEFPDSLTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDVNIEEE 305
           PFMKGKLYIHFTVEFPDSL PDQVKALEA+LP +P S +TDMELDECEETTLHDVN+EEE
Sbjct: 328 PFMKGKLYIHFTVEFPDSLNPDQVKALEAVLPPKPSSQLTDMELDECEETTLHDVNMEEE 387

Query: 306 MRRKQAHAQEAYEEDEDMPGGAQRVQCAQQ 335
            RRKQ  AQEAY+ED+DMPGGAQRVQCAQQ
Sbjct: 388 TRRKQQQAQEAYDEDDDMPGGAQRVQCAQQ 417

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|1169384|sp|P43644.1|DNJH_ATRNU RecName: Full=DnaJ protein homolog ANJ1; Flags: Precursor Back     alignment and taxonomy information
>gi|363814581|ref|NP_001242510.1| uncharacterized protein LOC100808604 [Glycine max] gi|255641905|gb|ACU21221.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449442633|ref|XP_004139085.1| PREDICTED: dnaJ protein homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|225464824|ref|XP_002270362.1| PREDICTED: dnaJ protein homolog [Vitis vinifera] gi|147804853|emb|CAN64692.1| hypothetical protein VITISV_030671 [Vitis vinifera] Back     alignment and taxonomy information
>gi|161137763|gb|ABX57881.1| DnaJ [Viola baoshanensis] Back     alignment and taxonomy information
>gi|449518563|ref|XP_004166311.1| PREDICTED: dnaJ protein homolog, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|224104629|ref|XP_002313505.1| predicted protein [Populus trichocarpa] gi|222849913|gb|EEE87460.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357453279|ref|XP_003596916.1| DnaJ [Medicago truncatula] gi|355485964|gb|AES67167.1| DnaJ [Medicago truncatula] Back     alignment and taxonomy information
>gi|357471393|ref|XP_003605981.1| DnaJ [Medicago truncatula] gi|355507036|gb|AES88178.1| DnaJ [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query335
TAIR|locus:2081378420 J3 [Arabidopsis thaliana (taxi 1.0 0.797 0.730 2.2e-130
TAIR|locus:505006628419 J2 "DNAJ homologue 2" [Arabido 1.0 0.799 0.694 3.4e-125
ZFIN|ZDB-GENE-030131-2884413 dnaja2l "DnaJ (Hsp40) homolog, 0.982 0.796 0.447 1.8e-71
ZFIN|ZDB-GENE-040426-2884412 dnaja2 "DnaJ (Hsp40) homolog, 0.877 0.713 0.465 3.7e-71
UNIPROTKB|O60884412 DNAJA2 "DnaJ homolog subfamily 0.991 0.805 0.428 1.8e-69
UNIPROTKB|Q2HJ94412 DNAJA2 "DnaJ homolog subfamily 0.991 0.805 0.425 3e-69
UNIPROTKB|E2R7F3413 DNAJA2 "Uncharacterized protei 0.991 0.803 0.425 3.8e-69
UNIPROTKB|F1RP05412 LOC100521133 "Uncharacterized 0.991 0.805 0.425 3.8e-69
MGI|MGI:1931882412 Dnaja2 "DnaJ (Hsp40) homolog, 0.991 0.805 0.425 6.3e-69
UNIPROTKB|Q5M9H7412 Dnaja2 "DnaJ homolog subfamily 0.991 0.805 0.425 6.3e-69
TAIR|locus:2081378 J3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1279 (455.3 bits), Expect = 2.2e-130, P = 2.2e-130
 Identities = 247/338 (73%), Positives = 267/338 (78%)

Query:     1 MGGGAGAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVVHPLKVSLEDLYLGTSKKLSL 60
             MGGG G HDPFDI                       EDVVHPLKVSLED+YLGT KKLSL
Sbjct:    83 MGGGGGGHDPFDIFSSFFGGGPFGGNTSRQRRQRRGEDVVHPLKVSLEDVYLGTMKKLSL 142

Query:    61 SRNVIXXXXXXXXXXXXXXXXXXXXQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 120
             SRN +                    QG+GMKVSIR LGP MIQQMQH CNECKGTGETIN
Sbjct:   143 SRNALCSKCNGKGSKSGASLKCGGCQGSGMKVSIRQLGPGMIQQMQHACNECKGTGETIN 202

Query:   121 DKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEH 180
             D+DRCPQCKGDKV+ EKKVLEV VEKGMQ+ QKITF G+ADEAPDTVTGDIVFVLQQKEH
Sbjct:   203 DRDRCPQCKGDKVIPEKKVLEVNVEKGMQHSQKITFEGQADEAPDTVTGDIVFVLQQKEH 262

Query:   181 PKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGM 240
             PKFKRKGEDLF EHTLSLTEALCGFQF LTHLDGR LLIKSNPGEVVKPDSYKAI++EGM
Sbjct:   263 PKFKRKGEDLFVEHTLSLTEALCGFQFVLTHLDGRSLLIKSNPGEVVKPDSYKAISDEGM 322

Query:   241 PLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDV 300
             P+YQRPFMKGKLYIHFTVEFPDSL+PDQ KALEA+LP    + ++DME+DECEETTLHDV
Sbjct:   323 PIYQRPFMKGKLYIHFTVEFPDSLSPDQTKALEAVLPKPSTAQLSDMEIDECEETTLHDV 382

Query:   301 NIEEEMRRKQAHAQEAYE---EDEDMPGGAQRVQCAQQ 335
             NIE+EMRRK    +EAY+   ED+D PGGAQRVQCAQQ
Sbjct:   383 NIEDEMRRKAQAQREAYDDDDEDDDHPGGAQRVQCAQQ 420
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=ISS
GO:0031072 "heat shock protein binding" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0005730 "nucleolus" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IMP
GO:0043462 "regulation of ATPase activity" evidence=IMP
GO:0005829 "cytosol" evidence=IDA
GO:0009911 "positive regulation of flower development" evidence=IMP
GO:0048573 "photoperiodism, flowering" evidence=IMP
GO:0009506 "plasmodesma" evidence=IDA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
TAIR|locus:505006628 J2 "DNAJ homologue 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2884 dnaja2l "DnaJ (Hsp40) homolog, subfamily A, member 2, like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2884 dnaja2 "DnaJ (Hsp40) homolog, subfamily A, member 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O60884 DNAJA2 "DnaJ homolog subfamily A member 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q2HJ94 DNAJA2 "DnaJ homolog subfamily A member 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R7F3 DNAJA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RP05 LOC100521133 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1931882 Dnaja2 "DnaJ (Hsp40) homolog, subfamily A, member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5M9H7 Dnaja2 "DnaJ homolog subfamily A member 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P43644DNJH_ATRNUNo assigned EC number0.88780.97610.7841N/Ano
P31689DNJA1_HUMANNo assigned EC number0.50460.92230.7783yesno
P63036DNJA1_RATNo assigned EC number0.50460.92230.7783yesno
P63037DNJA1_MOUSENo assigned EC number0.50460.92230.7783yesno
Q03363DNJH1_ALLPONo assigned EC number0.82120.97910.8261N/Ano
Q2HJ94DNJA2_BOVINNo assigned EC number0.53060.84770.6893yesno
Q04960DNJH_CUCSANo assigned EC number0.86620.97310.7893N/Ano
P42824DNJH2_ALLPONo assigned EC number0.82770.98200.7870N/Ano
P42825DNAJ2_ARATHNo assigned EC number0.80360.97610.7804yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00037272001
SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_87, whole genome shotgun sequence); (417 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00033682001
SubName- Full=Chromosome chr8 scaffold_68, whole genome shotgun sequence;; Essential component [...] (313 aa)
• •     0.486
GSVIVG00017185001
SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (482 aa)
  •     0.486
GSVIVG00018506001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (649 aa)
  •     0.483
GSVIVG00017724001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (538 aa)
  •     0.483
GSVIVG00022013001
SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (667 aa)
  •     0.481
GSVIVG00018481001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (650 aa)
  •     0.481
GSVIVG00024357001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (652 aa)
  •     0.480
GSVIVG00022731001
SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (655 aa)
  •     0.479
GSVIVG00024351001
SubName- Full=Putative uncharacterized protein (Chromosome chr6 scaffold_3, whole genome shotgu [...] (648 aa)
  •     0.478
GSVIVG00021301001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (649 aa)
  •     0.478

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
PTZ00037421 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov 1e-113
COG0484371 COG0484, DnaJ, DnaJ-class molecular chaperone with 6e-73
TIGR02349354 TIGR02349, DnaJ_bact, chaperone protein DnaJ 7e-58
cd10747158 cd10747, DnaJ_C, C-terminal substrate binding doma 2e-41
PRK10767371 PRK10767, PRK10767, chaperone protein DnaJ; Provis 6e-41
PRK14289386 PRK14289, PRK14289, chaperone protein DnaJ; Provis 2e-35
PRK14281397 PRK14281, PRK14281, chaperone protein DnaJ; Provis 2e-35
PRK14278378 PRK14278, PRK14278, chaperone protein DnaJ; Provis 4e-35
PRK14283378 PRK14283, PRK14283, chaperone protein DnaJ; Provis 2e-34
PRK14285365 PRK14285, PRK14285, chaperone protein DnaJ; Provis 9e-33
PRK14292371 PRK14292, PRK14292, chaperone protein DnaJ; Provis 1e-32
PRK14301373 PRK14301, PRK14301, chaperone protein DnaJ; Provis 6e-32
PRK14286372 PRK14286, PRK14286, chaperone protein DnaJ; Provis 6e-31
PRK14291382 PRK14291, PRK14291, chaperone protein DnaJ; Provis 1e-30
PRK14290365 PRK14290, PRK14290, chaperone protein DnaJ; Provis 6e-30
PRK14297380 PRK14297, PRK14297, chaperone protein DnaJ; Provis 9e-30
PRK14277386 PRK14277, PRK14277, chaperone protein DnaJ; Provis 9e-30
PRK14298377 PRK14298, PRK14298, chaperone protein DnaJ; Provis 1e-29
PRK14280376 PRK14280, PRK14280, chaperone protein DnaJ; Provis 3e-29
PRK14276380 PRK14276, PRK14276, chaperone protein DnaJ; Provis 1e-28
PRK14293374 PRK14293, PRK14293, chaperone protein DnaJ; Provis 2e-28
PRK14294366 PRK14294, PRK14294, chaperone protein DnaJ; Provis 4e-28
PRK14282369 PRK14282, PRK14282, chaperone protein DnaJ; Provis 2e-27
PRK14296372 PRK14296, PRK14296, chaperone protein DnaJ; Provis 3e-27
PRK14279392 PRK14279, PRK14279, chaperone protein DnaJ; Provis 8e-27
PRK14287371 PRK14287, PRK14287, chaperone protein DnaJ; Provis 7e-25
PRK14295389 PRK14295, PRK14295, chaperone protein DnaJ; Provis 9e-25
PRK14300372 PRK14300, PRK14300, chaperone protein DnaJ; Provis 4e-23
pfam0155681 pfam01556, DnaJ_C, DnaJ C terminal domain 3e-21
PRK14284391 PRK14284, PRK14284, chaperone protein DnaJ; Provis 7e-21
PRK14288369 PRK14288, PRK14288, chaperone protein DnaJ; Provis 1e-19
pfam0068465 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain 5e-19
cd1071965 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and H 9e-18
cd10747158 cd10747, DnaJ_C, C-terminal substrate binding doma 9e-05
PRK14299291 PRK14299, PRK14299, chaperone protein DnaJ; Provis 5e-04
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional Back     alignment and domain information 
 Score =  334 bits (859), Expect = e-113
 Identities = 146/335 (43%), Positives = 198/335 (59%), Gaps = 11/335 (3%)

Query: 3   GGAGAHDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSR 62
           GG    D  D+F   FGG    GG      ++RGED+V  LKV+LE +Y G  +KL++++
Sbjct: 96  GGEQPADASDLFDLIFGGGRKPGG------KKRGEDIVSHLKVTLEQIYNGAMRKLAINK 149

Query: 63  NVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 122
           +VIC+ C G G    A + C  C G G++V IR +G  MI Q Q  CN C G G+ I + 
Sbjct: 150 DVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGS-MIHQTQSTCNSCNGQGKIIPES 208

Query: 123 DRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPK 182
            +C  C G  V + +K+LEV ++KG+ N  KITF GEADE P+ + G++VF+L +K H  
Sbjct: 209 KKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVVFILNEKPHDT 268

Query: 183 FKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPL 242
           FKR+G DLF    +SL EAL GF F +THLDGR+LL+ + PGEVVKP   K IN EGMP 
Sbjct: 269 FKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPT 328

Query: 243 YQRPFMKGKLYIHFTVEFP--DSLTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDV 300
           Y+ PF KG LY+ F V FP     T ++ + L+++ P  P     D+E  E E  T  +V
Sbjct: 329 YKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQNPEEKK-DLEDTEIEVVTAQNV 387

Query: 301 NIEEEMRRKQAHAQEAYEEDEDMPGGAQRVQCAQQ 335
           + EE   R Q    +  E+DE      +RV C QQ
Sbjct: 388 DPEEVKDRDQKQQYQEDEDDEH-HQEGERVACRQQ 421

Length = 421
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ Back     alignment and domain information
>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40 Back     alignment and domain information
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain Back     alignment and domain information
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain Back     alignment and domain information
>gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40 Back     alignment and domain information
>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40 Back     alignment and domain information
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 335
PTZ00037421 DnaJ_C chaperone protein; Provisional 100.0
COG0484371 DnaJ DnaJ-class molecular chaperone with C-termina 100.0
PRK14296372 chaperone protein DnaJ; Provisional 100.0
PRK14278378 chaperone protein DnaJ; Provisional 100.0
PRK14298377 chaperone protein DnaJ; Provisional 100.0
PRK14277386 chaperone protein DnaJ; Provisional 100.0
PRK14276380 chaperone protein DnaJ; Provisional 100.0
PRK14287371 chaperone protein DnaJ; Provisional 100.0
PRK14288369 chaperone protein DnaJ; Provisional 100.0
PRK14280376 chaperone protein DnaJ; Provisional 100.0
PRK14286372 chaperone protein DnaJ; Provisional 100.0
PRK14297380 chaperone protein DnaJ; Provisional 100.0
PRK14281397 chaperone protein DnaJ; Provisional 100.0
PRK14285365 chaperone protein DnaJ; Provisional 100.0
PRK14282369 chaperone protein DnaJ; Provisional 100.0
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 100.0
PRK14279392 chaperone protein DnaJ; Provisional 100.0
PRK14284391 chaperone protein DnaJ; Provisional 100.0
KOG0712337 consensus Molecular chaperone (DnaJ superfamily) [ 100.0
PRK14295389 chaperone protein DnaJ; Provisional 100.0
PRK14301373 chaperone protein DnaJ; Provisional 100.0
PRK14290365 chaperone protein DnaJ; Provisional 100.0
PRK14293374 chaperone protein DnaJ; Provisional 100.0
PRK10767371 chaperone protein DnaJ; Provisional 100.0
PRK14300372 chaperone protein DnaJ; Provisional 100.0
PRK14294366 chaperone protein DnaJ; Provisional 100.0
PRK14292371 chaperone protein DnaJ; Provisional 100.0
PRK14291382 chaperone protein DnaJ; Provisional 100.0
PRK14289386 chaperone protein DnaJ; Provisional 100.0
PRK14283378 chaperone protein DnaJ; Provisional 100.0
PRK10266306 curved DNA-binding protein CbpA; Provisional 100.0
PRK14299291 chaperone protein DnaJ; Provisional 100.0
TIGR03835871 termin_org_DnaJ terminal organelle assembly protei 100.0
PF0155681 CTDII: DnaJ C terminal domain; InterPro: IPR002939 99.88
KOG0713336 consensus Molecular chaperone (DnaJ superfamily) [ 99.77
KOG0715288 consensus Molecular chaperone (DnaJ superfamily) [ 99.72
PF0068466 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0 99.58
PRK14300372 chaperone protein DnaJ; Provisional 99.47
COG0484371 DnaJ DnaJ-class molecular chaperone with C-termina 99.47
PRK14282369 chaperone protein DnaJ; Provisional 99.46
PRK14294366 chaperone protein DnaJ; Provisional 99.39
PRK14285365 chaperone protein DnaJ; Provisional 99.39
PRK14290365 chaperone protein DnaJ; Provisional 99.38
PRK14298377 chaperone protein DnaJ; Provisional 99.37
PRK14277386 chaperone protein DnaJ; Provisional 99.36
PRK14279392 chaperone protein DnaJ; Provisional 99.33
PRK14284391 chaperone protein DnaJ; Provisional 99.32
PRK10767371 chaperone protein DnaJ; Provisional 99.31
PRK14301373 chaperone protein DnaJ; Provisional 99.3
PRK14278378 chaperone protein DnaJ; Provisional 99.29
PRK14288369 chaperone protein DnaJ; Provisional 99.29
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 99.28
PRK14295389 chaperone protein DnaJ; Provisional 99.27
PRK14287371 chaperone protein DnaJ; Provisional 99.25
PRK14293374 chaperone protein DnaJ; Provisional 99.23
PRK14286372 chaperone protein DnaJ; Provisional 99.23
PRK14292371 chaperone protein DnaJ; Provisional 99.22
PRK14281397 chaperone protein DnaJ; Provisional 99.22
PRK14280376 chaperone protein DnaJ; Provisional 99.21
PRK14276380 chaperone protein DnaJ; Provisional 99.2
PRK14297380 chaperone protein DnaJ; Provisional 99.19
PRK14296372 chaperone protein DnaJ; Provisional 99.17
PTZ00037421 DnaJ_C chaperone protein; Provisional 99.14
PRK14289386 chaperone protein DnaJ; Provisional 99.13
PRK14291382 chaperone protein DnaJ; Provisional 99.12
PRK14283378 chaperone protein DnaJ; Provisional 99.1
PRK14299291 chaperone protein DnaJ; Provisional 98.98
PLN03165111 chaperone protein dnaJ-related; Provisional 98.86
PRK10266306 curved DNA-binding protein CbpA; Provisional 98.77
PF0155681 CTDII: DnaJ C terminal domain; InterPro: IPR002939 98.61
KOG0714306 consensus Molecular chaperone (DnaJ superfamily) [ 98.54
KOG0712337 consensus Molecular chaperone (DnaJ superfamily) [ 98.37
TIGR02642186 phage_xxxx uncharacterized phage protein. This unc 98.31
COG1107 715 Archaea-specific RecJ-like exonuclease, contains D 97.65
PF0068466 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0 97.62
KOG2813406 consensus Predicted molecular chaperone, contains 97.58
TIGR03835871 termin_org_DnaJ terminal organelle assembly protei 97.55
COG1107 715 Archaea-specific RecJ-like exonuclease, contains D 96.78
PLN03165111 chaperone protein dnaJ-related; Provisional 96.7
KOG2813406 consensus Predicted molecular chaperone, contains 96.05
TIGR02642186 phage_xxxx uncharacterized phage protein. This unc 95.73
cd03031147 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d 85.47
KOG2824281 consensus Glutaredoxin-related protein [Posttransl 85.14
TIGR00630924 uvra excinuclease ABC, A subunit. This family is b 81.74
KOG0715288 consensus Molecular chaperone (DnaJ superfamily) [ 80.54
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.3e-77  Score=583.40  Aligned_cols=318  Identities=45%  Similarity=0.850  Sum_probs=284.4

Q ss_pred             CCChhhHhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCcccCCCCC
Q 019801            7 AHDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQ   86 (335)
Q Consensus         7 ~~~~~d~F~~fFgg~~~ggg~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~   86 (335)
                      +.++.|+|+.|||++    +  ++.+++++.|+.+.|.|||+|+|+|++++|.+.+.+.|+.|+|+|.+.+...+|+.|+
T Consensus       100 ~~d~~d~f~~~Fggg----~--~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~  173 (421)
T PTZ00037        100 PADASDLFDLIFGGG----R--KPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCN  173 (421)
T ss_pred             CcchhhhHHHhhccc----c--ccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCC
Confidence            356889999999852    1  1233567999999999999999999999999999999999999998777668999999


Q ss_pred             cccEEEEEEecCCccceeceecCCCCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCCCC
Q 019801           87 GTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDT  166 (335)
Q Consensus        87 G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~  166 (335)
                      |+|.++.++++|| |++|++.+|+.|+|+|+++..+++|+.|+|.+++.+.++|+|+|||||.+|++|+|+|+|++.+++
T Consensus       174 G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~  252 (421)
T PTZ00037        174 GQGIRVQIRQMGS-MIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPNE  252 (421)
T ss_pred             CCCeEEEEEeecc-eeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCCCC
Confidence            9999999999999 889999999999999999988899999999999999999999999999999999999999998888


Q ss_pred             CcccEEEEEEEecCCccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCC
Q 019801          167 VTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRP  246 (335)
Q Consensus       167 ~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~  246 (335)
                      .||||||+|++++|+.|+|+|+|||++++|||+|||+|+++.|+||||+.|.|++|||++++||++++|+|+|||..+++
T Consensus       253 ~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~  332 (421)
T PTZ00037        253 IPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSP  332 (421)
T ss_pred             CCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccCCCC
Confidence            99999999999999999999999999999999999999999999999998999999999999999999999999987655


Q ss_pred             CCCCcEEEEEEEECC--CCCCHHHHHHHHHHCCCCCCCCCCCCCcccceeeeeecCChhHHHHHhhhcccccccccCC--
Q 019801          247 FMKGKLYIHFTVEFP--DSLTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDVNIEEEMRRKQAHAQEAYEEDED--  322 (335)
Q Consensus       247 ~~~GdL~i~~~V~~P--~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  322 (335)
                      +.+|||||+|+|.||  +.||++|+++|++|||.++.... +++.+++|+++++++|+++...+   .++|+|+||+|  
T Consensus       333 ~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  408 (421)
T PTZ00037        333 FKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQNPEEKK-DLEDTEIEVVTAQNVDPEEVKDR---DQKQQYQEDEDDE  408 (421)
T ss_pred             CCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhccCCCCCCC-CCCcccceeEecccCCHHHhhhh---HHHHhhccccccc
Confidence            678999999999999  88999999999999987654443 45668899999999999875443   23455544433  


Q ss_pred             CCCCCCCCCCcCC
Q 019801          323 MPGGAQRVQCAQQ  335 (335)
Q Consensus       323 ~~~~~~~~~C~~q  335 (335)
                      +++++++||||||
T Consensus       409 ~~~~~~~v~c~~q  421 (421)
T PTZ00037        409 HHQEGERVACRQQ  421 (421)
T ss_pred             cCCCCCccccCCC
Confidence            2346799999998

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress Back     alignment and domain information
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PLN03165 chaperone protein dnaJ-related; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress Back     alignment and domain information
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02642 phage_xxxx uncharacterized phage protein Back     alignment and domain information
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation Back     alignment and domain information
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] Back     alignment and domain information
>PLN03165 chaperone protein dnaJ-related; Provisional Back     alignment and domain information
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02642 phage_xxxx uncharacterized phage protein Back     alignment and domain information
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs Back     alignment and domain information
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00630 uvra excinuclease ABC, A subunit Back     alignment and domain information
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
1nlt_A248 The Crystal Structure Of Hsp40 Ydj1 Length = 248 4e-46
3agx_A181 Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi 1e-24
3agz_A190 Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi 1e-24
2qld_A183 Human Hsp40 Hdj1 Length = 183 1e-24
2q2g_A180 Crystal Structure Of Dimerization Domain Of Hsp40 F 3e-23
1c3g_A170 S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 1 2e-17
2b26_A173 The Crystal Structure Of The Protein Complex Of Yea 2e-17
1xao_A121 Hsp40-Ydj1 Dimerization Domain Length = 121 1e-13
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248 Back     alignment and structure 
Iteration: 1

 Score =  181 bits (460), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 96/239 (40%), Positives = 141/239 (58%), Gaps = 4/239 (1%)
Query: 37  EDVVHPLKVSLEDLYLGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGTGMKVSIRH 96
           +D+ H +  SLE+LY G + KL+L++ ++                     G G+K   R 
Sbjct: 12  KDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQ 71
Query: 97  LGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITF 156
           +GP MIQ+ Q  C+ C GTG+ I+ KDRC  C G KV  E+K+LEV VE GM++GQ+I F
Sbjct: 72  MGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVF 130
Query: 157 PGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQ 216
            GEAD+APD + GD+VF++ ++ H  FKR G+DL YE  + L  A+ G +FAL H+ G  
Sbjct: 131 KGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDW 190
Query: 217 LLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDS--LTPDQVKALE 273
           L +   PGEV+ P   K I  +GMP+ +     G L I FT++ P++   + + +K LE
Sbjct: 191 LKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGY-GNLIIKFTIKDPENHFTSEENLKKLE 248
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Length = 181 Back     alignment and structure
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 Length = 190 Back     alignment and structure
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1 Length = 183 Back     alignment and structure
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From Cryptosporidium Parvum, Cgd2_1800 Length = 180 Back     alignment and structure
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 170 Back     alignment and structure
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast Hsp40 Sis1 And Hsp70 Ssa1 Length = 173 Back     alignment and structure
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain Length = 121 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 1e-129
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 2e-87
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 1e-05
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 5e-80
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 6e-71
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 2e-05
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 5e-50
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 1e-23
2ctt_A104 DNAJ homolog subfamily A member 3; ZING finger, be 9e-19
1exk_A79 DNAJ protein; extended beta-hairpin, CXXCXGXG, zin 2e-13
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 7e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248 Back     alignment and structure
 Score =  368 bits (946), Expect = e-129
 Identities = 108/248 (43%), Positives = 157/248 (63%), Gaps = 2/248 (0%)

Query: 26  GSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCSGC 85
           G+ R R  +RG+D+ H +  SLE+LY G + KL+L++ ++C +C G+G K GA  KC+ C
Sbjct: 1   GAQRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSC 60

Query: 86  QGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVE 145
            G G+K   R +GP MIQ+ Q  C+ C GTG+ I+ KDRC  C G KV  E+K+LEV VE
Sbjct: 61  NGQGIKFVTRQMGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVE 119

Query: 146 KGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGF 205
            GM++GQ+I F GEAD+APD + GD+VF++ ++ H  FKR G+DL YE  + L  A+ G 
Sbjct: 120 PGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGG 179

Query: 206 QFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLT 265
           +FAL H+ G  L +   PGEV+ P   K I  +GMP+ +     G L I FT++ P++  
Sbjct: 180 EFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPENHF 238

Query: 266 PDQVKALE 273
             +    +
Sbjct: 239 TSEENLKK 246
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181 Back     alignment and structure
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181 Back     alignment and structure
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180 Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170 Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170 Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329 Back     alignment and structure
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104 Back     alignment and structure
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Length = 79 Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query335
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 100.0
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 100.0
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 100.0
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 100.0
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 100.0
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 99.97
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 99.94
2ctt_A104 DNAJ homolog subfamily A member 3; ZING finger, be 99.85
1exk_A79 DNAJ protein; extended beta-hairpin, CXXCXGXG, zin 99.5
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 99.22
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 98.96
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 98.83
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 98.57
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 98.54
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 98.49
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 98.47
3lcz_A53 YCZA, inhibitor of trap, regulated by T-box (Trp) 97.8
2ctt_A104 DNAJ homolog subfamily A member 3; ZING finger, be 97.76
1exk_A79 DNAJ protein; extended beta-hairpin, CXXCXGXG, zin 97.73
3pmq_A 669 Decaheme cytochrome C MTRF; greek KEY, C type cyto 97.68
2bx9_A53 Anti-trap, AT, tryptophan RNA-binding attenuator p 97.13
2bx9_A53 Anti-trap, AT, tryptophan RNA-binding attenuator p 96.91
3lcz_A53 YCZA, inhibitor of trap, regulated by T-box (Trp) 96.9
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
Probab=100.00  E-value=1.3e-67  Score=486.46  Aligned_cols=241  Identities=45%  Similarity=0.884  Sum_probs=220.4

Q ss_pred             CCCCCCCceEEEEEEeeehheeceeeEeecceeeEcCCCCCCCCCCCCcccCCCCCcccEEEEEEecCCccceeceecCC
Q 019801           31 RRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCN  110 (335)
Q Consensus        31 ~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~  110 (335)
                      +++++++|+.+.|.|||||+|+|++++|.+.+.+.|++|+|+|+++++..+|+.|+|+|.++..+++|| |+++++.+|+
T Consensus         6 ~~~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~   84 (248)
T 1nlt_A            6 RGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MIQRFQTECD   84 (248)
T ss_dssp             --CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSS-EEEEEECSCT
T ss_pred             CCCCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCc-eEEEEEEcCC
Confidence            445789999999999999999999999999999999999999999887789999999999999999999 9999999999


Q ss_pred             CCCceeEEEcCcCCCCCCCCCeEEEEeEEEEEEEecCCcCCcEEEecCCCCCCCCCCcccEEEEEEEecCCccccccccc
Q 019801          111 ECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDL  190 (335)
Q Consensus       111 ~C~G~G~~~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~GDL~v~i~v~~h~~f~R~g~dL  190 (335)
                      .|+|+|+++..+++|+.|+|.+++.+.++|+|+|||||++|++|+|+|+|++.+++.+|||||+|++++|+.|+|+|+||
T Consensus        85 ~C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL  164 (248)
T 1nlt_A           85 VCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDL  164 (248)
T ss_dssp             TCSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEE
T ss_pred             CCCCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEE
Confidence            99999999987899999999999999999999999999999999999999998888999999999999999999999999


Q ss_pred             eecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECCCC--CCHHH
Q 019801          191 FYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDS--LTPDQ  268 (335)
Q Consensus       191 ~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P~~--l~~~~  268 (335)
                      |++++|||+|||+|++++|+||||+.+.|+||||++++||++++|+|+|||..+++ .+|||||+|+|+||++  ||++|
T Consensus       165 ~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~-~~GDL~V~~~V~~P~~~~Ls~~q  243 (248)
T 1nlt_A          165 VYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPENHFTSEEN  243 (248)
T ss_dssp             EEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSC-SBCCEEEEEEEECCC--------
T ss_pred             EEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCC-CcCCEEEEEEEECCCCCCCCHHH
Confidence            99999999999999999999999998999999999999999999999999987554 6899999999999999  99999


Q ss_pred             HHHHH
Q 019801          269 VKALE  273 (335)
Q Consensus       269 ~~~l~  273 (335)
                      +++|+
T Consensus       244 ~~~l~  248 (248)
T 1nlt_A          244 LKKLE  248 (248)
T ss_dssp             -----
T ss_pred             HHhhC
Confidence            98875
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Back     alignment and structure
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Back     alignment and structure
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Back     alignment and structure
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A Back     alignment and structure
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Back     alignment and structure
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis} Back     alignment and structure
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C* Back     alignment and structure
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C* Back     alignment and structure
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 335
d1c3ga290 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Ba 2e-24
d1nlta374 g.54.1.1 (A:139-212) Mitochondrial protein import 2e-23
d1nlta280 b.4.1.1 (A:258-337) Mitochondrial protein import p 1e-20
d1exka_79 g.54.1.1 (A:) Cysteine-rich domain of the chaperon 2e-13
d1c3ga180 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba 2e-11
d1c3ga180 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba 0.003
d1nlta174 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei 3e-09
d1m1qa_90 a.138.1.3 (A:) Flavocytochrome c3 (respiratory fum 6e-07
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90 Back     information, alignment and structure

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.1 bits (231), Expect = 2e-24
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 183 FKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPL 242
           FKR G+DL Y   LS  E+L GF   +  +DGR   +  +  + V+P        +GMP 
Sbjct: 2   FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRT--LPLSRVQPVQPSQTSTYPGQGMPT 59

Query: 243 YQRPFMKGKLYIHFTVEFPDSLTPDQVKALE 273
            + P  +G L + + V++P SL   Q +A++
Sbjct: 60  PKNPSQRGNLIVKYKVDYPISLNDAQKRAID 90
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74 Back     information, alignment and structure
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80 Back     information, alignment and structure
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Length = 79 Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80 Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80 Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74 Back     information, alignment and structure
>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} Length = 90 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query335
d1c3ga290 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.94
d1nlta280 Mitochondrial protein import protein mas5 (Hsp40, 99.89
d1nlta174 Mitochondrial protein import protein mas5 (Hsp40, 99.72
d1nlta374 Mitochondrial protein import protein mas5 (Hsp40, 99.71
d1c3ga180 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.69
d1exka_79 Cysteine-rich domain of the chaperone protein DnaJ 99.56
d1nlta174 Mitochondrial protein import protein mas5 (Hsp40, 99.32
d1c3ga290 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 98.77
d1c3ga180 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 98.76
d1nlta280 Mitochondrial protein import protein mas5 (Hsp40, 98.58
d1exka_79 Cysteine-rich domain of the chaperone protein DnaJ 97.88
d1nlta374 Mitochondrial protein import protein mas5 (Hsp40, 97.42
d1m1qa_90 Flavocytochrome c3 (respiratory fumarate reductase 96.23
d1m1qa_90 Flavocytochrome c3 (respiratory fumarate reductase 84.18
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=9.2e-28  Score=185.66  Aligned_cols=90  Identities=34%  Similarity=0.648  Sum_probs=85.7

Q ss_pred             ccccccccceecccCCHHHHhcCCEEEEecCCCCEEEEEeCCCccccCCcEEEEccCCCCCCCCCCCCCcEEEEEEEECC
Q 019801          182 KFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFP  261 (335)
Q Consensus       182 ~f~R~g~dL~~~~~Isl~eAl~G~~~~i~tldG~~l~i~ip~g~v~~~g~~~~i~g~Gmp~~~~~~~~GdL~i~~~V~~P  261 (335)
                      .|+|+|+||+++++|||+|||+|++++|+|+||+.+.|++|++  ++||++++|+|+|||.+++++.+|||||+|+|++|
T Consensus         1 ~F~R~G~DL~~~~~I~~~eal~G~~~~i~~~dG~~i~i~ip~~--~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P   78 (90)
T d1c3ga2           1 NFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP--VQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYP   78 (90)
T ss_dssp             SEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSC--CCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCC
T ss_pred             CCeEeCCeEEEEEEeCHHHHhcCCeEEEecccccceecccccc--cccccccccCCCCCCcCCCCCCcCCEEEEEEEEcC
Confidence            4999999999999999999999999999999999999999988  89999999999999998777789999999999999


Q ss_pred             CCCCHHHHHHHH
Q 019801          262 DSLTPDQVKALE  273 (335)
Q Consensus       262 ~~l~~~~~~~l~  273 (335)
                      ++||++|+++|+
T Consensus        79 ~~ls~~qk~~lE   90 (90)
T d1c3ga2          79 ISLNDAQKRAID   90 (90)
T ss_dssp             SSCCTTHHHHTC
T ss_pred             CCCCHHHHHhhC
Confidence            999999998874
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} Back     information, alignment and structure
>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} Back     information, alignment and structure