Citrus Sinensis ID: 019826

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
Protein Sequence
MARFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGTVGDKKKQKGSKQENQEDDEESEEDVKGSEED
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHccccccHHHHHcccccHHHHHHHHccccccEEEEEEEcccccEEEEEEcccccEEEEEEccccHHHHHHHHcccccccccccccccEEEEccccccccHHHHHHHHHHHccccccccccccccccEEEEEEEEccccEEEEEEEEEEEEEccccHHHHHHHHcccccccccccccHHHHHcccccccccccccccEEEEccccccccccccccEEEEEEEcccEEEEEEEEEcccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHcccccccccccccccccccccHHHHcccccEEEEEcccccHcHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHEccccccEEEEEEEccccccEEEEEEcccccEEEEEEEcccHHHHHHHHHccccccHHHcccccEEEEcccccccHHHHHHHHHHHHccccccccccccccEEEEEEEEccccccEEEEEEEEEEEEEccccHHHHHHHHHccccccccHHHHHHHHHcccccccccccccccEEEcccHccccccHHcccEEEEEEccccEEEEEEEEEcccccccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
marfrnskkkgFVKSFvkkkqptvdhitgdkipksfvfsrgklpgplrQLEMDLRKLMLPHTALNLKEKKRNNLKDFlnvagpmgvTHFLMLSktesapylrvartpqgptltfkIHEYSLAVDVaqsqlrprcpqdlfktsplivlsgfgtgdqhLKLTTIMFQnifpaidintvklsTCQRIVLLnynkdtklidfrhysirlqpvgvSRRLRKFVqshqvpdlrslqDVSDFVtkagygseseaddeAATVTLVSDlgrvnrastKSAVKLQEIGPRMTLQLIKVEEGLCSGSIifseygtvgdkkkqkgskqenqeddeeseedvkgseed
Flexible Loop (DISEMBL)
marfrnskkkgfvksfvkkkqptvdhitgdkipksfvfsrgklpgpLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLnynkdtklidfRHYSIRLQPVGVSRRLRKFVQshqvpdlrslqdvsDFVTKAGygseseaddeaATVTLvsdlgrvnrastksavklqeigprmTLQLIKVEEGLCSGSIIFSeygtvgdkkkqkgskqenqeddeeseedvkgseed
Low Complexity Region (SEG)
MARFRNskkkgfvksfvkkkQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAlnlkekkrnnlkDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGTVGDKKKQKGSkqenqeddeeseedvkgseed
Disordered region (IsUnstruct)
*************************HITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVT****************VTLVSDLGRV*******AVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGTV******************************
Disordered Region (DISOPRED)
*********************************KSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQ***********FKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFV*********SLQD****************************************VKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGT*******************************
Disordered Region (DISEMBL)
************VKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAG**********AATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGTV******************************
Disordered Region (DISPRO)
*****************************DKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAG**********AATVTLVSDL*R*N**STKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGTVGDKKKQKGSKQENQEDDEES**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGTVGDKKKQKGSKQENQEDDEESEEDVKGSEED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	335	2.2.26 [Sep-21-2011]
Q9ASU7	345	Peter Pan-like protein OS	yes	no	0.901	0.875	0.821	1e-147
Q91YU8	470	Suppressor of SWI4 1 homo	yes	no	0.8	0.570	0.474	5e-69
Q9NQ55	473	Suppressor of SWI4 1 homo	yes	no	0.802	0.568	0.472	2e-67
Q5REM3	473	Suppressor of SWI4 1 homo	yes	no	0.802	0.568	0.468	8e-67
Q9VDE5	460	Protein Peter pan OS=Dros	yes	no	0.802	0.584	0.433	2e-62
Q54N44	426	Peter Pan-like protein OS	yes	no	0.838	0.659	0.398	1e-61
O14206	389	Brix domain-containing pr	yes	no	0.955	0.822	0.374	2e-53
P38789	453	Ribosome biogenesis prote	yes	no	0.808	0.598	0.349	3e-46
Q12153	453	Ribosome biogenesis prote	no	no	0.808	0.598	0.340	5e-46

>sp|Q9ASU7|PPAN_ARATH Peter Pan-like protein OS=Arabidopsis thaliana GN=PPAN PE=1 SV=1

 Score =  520 bits (1338), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 249/303 (82%), Positives = 276/303 (91%), Gaps = 1/303 (0%)

Query: 1   MARFRNSKKKGFV-KSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
           M RF+N+KK   + K   KK Q  V H+TGDKIPKSFVFSR KL GP++QL+MDLRKLML
Sbjct: 1   MGRFKNNKKSRVIGKPIAKKNQEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLML 60

Query: 60  PHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
           P+TAL+LKEKKRN L+DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+Y
Sbjct: 61  PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120

Query: 120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLS 179
           SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTVKLS
Sbjct: 121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTVKLS 180

Query: 180 TCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKA 239
           TCQR+VLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RKFVQ+HQVPDLR+LQDVSDFVTKA
Sbjct: 181 TCQRLVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKFVQNHQVPDLRNLQDVSDFVTKA 240

Query: 240 GYGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIF 299
           GYGSESE D+EAATVTL SDLGRVN+ +TKSAVKLQEIGPRMT+QL+KVEEGLC+G IIF
Sbjct: 241 GYGSESEGDEEAATVTLSSDLGRVNKGATKSAVKLQEIGPRMTMQLVKVEEGLCTGGIIF 300

Query: 300 SEY 302
           SEY
Sbjct: 301 SEY 303

May play a role in cell growth, differentiation and cell cycle progression.
Arabidopsis thaliana (taxid: 3702)

>sp|Q91YU8|SSF1_MOUSE Suppressor of SWI4 1 homolog OS=Mus musculus GN=Ppan PE=2 SV=2

 Score =  261 bits (667), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 130/274 (47%), Positives = 193/274 (70%), Gaps = 6/274 (2%)

Query: 33  PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
           P SFVF+RG+    +RQL +D+R++M P TA  L+ +K+N+LKD + VAGP+GVTHFL+L
Sbjct: 29  PHSFVFTRGRAGRNVRQLSLDVRRVMEPLTATRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88

Query: 93  SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
           +KT+++ YL++ R P GPTLTF+I +Y+L  DV  S  R R  +  F   PL+VL+ FG 
Sbjct: 89  TKTDNSVYLKLMRLPGGPTLTFQISKYTLIRDVVSSLRRHRMHEQQFNHPPLLVLNSFGP 148

Query: 153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
              H+KL   MFQN+FP+I+++TV L+T +R +L+NYN D++ +DFRHYS+++ PVG SR
Sbjct: 149 QGMHIKLMATMFQNLFPSINVHTVNLNTIKRCLLINYNPDSQELDFRHYSVKVVPVGASR 208

Query: 213 RLRKFVQSHQVPDLRSLQDVSDFVTKAGYG---SESEADDEAATVTLVSDL-GRVNRAST 268
            ++K +Q  + P++  LQD+S+ +   G G   SE E D E  T  L   + GR N  + 
Sbjct: 209 GMKKLLQE-KFPNMSRLQDISELLA-TGVGLSDSEVEPDGEHNTTELPQAVAGRGNMQAQ 266

Query: 269 KSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
           +SAV+L EIGPRMTLQLIK++EG+ +G+++F  +
Sbjct: 267 QSAVRLTEIGPRMTLQLIKIQEGVGNGNVLFHSF 300

May have a role in cell growth.

Mus musculus (taxid: 10090)

>sp|Q9NQ55|SSF1_HUMAN Suppressor of SWI4 1 homolog OS=Homo sapiens GN=PPAN PE=1 SV=1

 Score =  256 bits (654), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 129/273 (47%), Positives = 186/273 (68%), Gaps = 4/273 (1%)

Query: 33  PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
           P SFVF+RG     +RQL +D+R++M P TA  L+ +K+N+LKD + VAGP+GVTHFL+L
Sbjct: 29  PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88

Query: 93  SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
           SKTE+  Y ++ R P GPTLTF++ +YSL  DV  S  R R  +  F   PL+VL+ FG 
Sbjct: 89  SKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGP 148

Query: 153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
              H+KL   MFQN+FP+I+++ V L+T +R +L++YN D++ +DFRHYSI++ PVG SR
Sbjct: 149 HGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIKVVPVGASR 208

Query: 213 RLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEAD---DEAATVTLVSDLGRVNRASTK 269
            ++K +Q  + P++  LQD+S+ +      SESEA+   D   T    +  GR N  + +
Sbjct: 209 GMKKLLQE-KFPNMSRLQDISELLATGAGLSESEAEPDGDHNITELPQAVAGRGNMRAQQ 267

Query: 270 SAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
           SAV+L EIGPRMTLQLIKV+EG+  G ++F  +
Sbjct: 268 SAVRLTEIGPRMTLQLIKVQEGVGEGKVMFHSF 300

May have a role in cell growth.

Homo sapiens (taxid: 9606)

>sp|Q5REM3|SSF1_PONAB Suppressor of SWI4 1 homolog OS=Pongo abelii GN=PPAN PE=2 SV=1

 Score =  254 bits (648), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 128/273 (46%), Positives = 185/273 (67%), Gaps = 4/273 (1%)

Query: 33  PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
           P SFVF+RG     +RQL +D+R++M P TA  L+ +K+N+LKD + VAGP+GVTHFL+L
Sbjct: 29  PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88

Query: 93  SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
           SKTE+  Y ++   P GPTLTF++ +YSL  DV  S  R R  +  F   PL+VL+ FG 
Sbjct: 89  SKTETNIYFKLMHLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAYPPLLVLNSFGP 148

Query: 153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
              H+KL   MFQN+FP+I+++ V L+T +R +L++YN D++ +DFRHYSI++ PVG SR
Sbjct: 149 HGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNHDSQELDFRHYSIKVVPVGASR 208

Query: 213 RLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEAD---DEAATVTLVSDLGRVNRASTK 269
            ++K +Q  + P++  LQD+S+ +      SESEA+   D   T    +  GR N  + +
Sbjct: 209 GMKKLLQE-KFPNMSRLQDISELLATGAGLSESEAEPDGDHNITELPQAVAGRGNMRAQQ 267

Query: 270 SAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
           SAV+L EIGPRMTLQLIKV+EG+  G ++F  +
Sbjct: 268 SAVRLTEIGPRMTLQLIKVQEGVGEGKVMFHSF 300

May have a role in cell growth.

Pongo abelii (taxid: 9601)

>sp|Q9VDE5|PPAN_DROME Protein Peter pan OS=Drosophila melanogaster GN=ppan PE=1 SV=1

 Score =  239 bits (610), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 118/272 (43%), Positives = 178/272 (65%), Gaps = 3/272 (1%)

Query: 33  PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
           P SFV  RG     +  L +D R++M P TA NL+EK+ N +KDF++++    V+H  + 
Sbjct: 28  PHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLREKRMNRIKDFVSLSSFFHVSHMGIF 87

Query: 93  SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
           +K  +    +V R P+GP+LTFK+H+++LA DV     +     D FK +PL++++ F  
Sbjct: 88  NKASTQLSFKVVRLPRGPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIMNNFSG 147

Query: 153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
             +HLKL    FQN+FP+I++ TV + T +R VL +YN DTKL++ RHYS+++ PVG+ R
Sbjct: 148 DGKHLKLMATTFQNMFPSINLATVNIGTIRRCVLFSYNPDTKLVEMRHYSVQVVPVGLKR 207

Query: 213 RLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEA-DDEAATVTLVSDL-GRVNRASTKS 270
            ++K V+   VP+L    +V DFVTK GY SESEA DDE + V L   L  + N    KS
Sbjct: 208 AVQKIVKG-TVPNLGKCNEVVDFVTKDGYASESEAEDDEQSHVVLAQTLKSKGNLEDKKS 266

Query: 271 AVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
           ++KL EIGPR+T+QLIK+EEGL +G +++ ++
Sbjct: 267 SIKLHEIGPRLTMQLIKIEEGLLTGEVLYHDH 298

Required for initiation of larval growth and normal mitotic growth but is not absolutely required for general biosynthesis or DNA replication. Required for progression of normal oogenesis and maturation of some imaginal tissues into adult structures.

Drosophila melanogaster (taxid: 7227)

>sp|Q54N44|PPAN_DICDI Peter Pan-like protein OS=Dictyostelium discoideum GN=ppan PE=3 SV=1

 Score =  237 bits (604), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 118/296 (39%), Positives = 186/296 (62%), Gaps = 15/296 (5%)

Query: 32  IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLM 91
           I KS V+ RG     +++L  + R++M P+TA  L+E   N  KDF+N+A   GV+H + 
Sbjct: 45  ISKSIVYKRGDCNKGIKKLVKEFRQVMEPYTATKLQETSDNTTKDFVNIAAHYGVSHLVG 104

Query: 92  LSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFG 151
            S T+   Y+ +AR P+GPT TFKI EYS   DVA++++RP   +  +  SPL+VL+GF 
Sbjct: 105 FSSTDIGSYMAMARLPKGPTTTFKIQEYSFQRDVAKAKIRPTSFEKSYLNSPLVVLNGFT 164

Query: 152 TGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVS 211
            G  HL++   M Q++FP+I++ T+KLSTC+R+VL NYNK+T  ++FRHY+I++  VGV+
Sbjct: 165 RGTPHLEMVQNMVQSLFPSINVYTLKLSTCKRVVLFNYNKETDNVEFRHYAIKVSNVGVN 224

Query: 212 RRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADD-EAATVTLVSDL---------- 260
           R +++ +QS ++PD+ +L D+SD+V      +ES+ +D     V L S +          
Sbjct: 225 RSIKRIIQS-KIPDISNLGDISDYVMNGLGATESDYEDANDGQVELSSKMINSKAKNIKL 283

Query: 261 ---GRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGTVGDKKKQKG 313
              G     + K A+KL+EIGPRM L L+KVE+ L  G +++ +Y    D +K++ 
Sbjct: 284 ERKGLDINTTQKRAIKLEEIGPRMNLSLLKVEDDLYKGEVLYHQYIKKSDIEKEEA 339

Dictyostelium discoideum (taxid: 44689)

>sp|O14206|YDD3_SCHPO Brix domain-containing protein C1B9.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1B9.03c PE=1 SV=2

 Score =  210 bits (534), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/350 (37%), Positives = 198/350 (56%), Gaps = 30/350 (8%)

Query: 11  GFVKSFVKKK-QPTVDHITGDKIPKSFVFSRG--KLPGPLRQLEMDLRKLMLPHTALNLK 67
           G  K  VKK+     D I    IPKS V   G  ++   L  L  DLR +M PHTA+ LK
Sbjct: 3   GIGKKRVKKRTHLKADPIQEAAIPKSMVIRSGASEVGRSLSLLTRDLRHMMEPHTAIRLK 62

Query: 68  EKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQ 127
           E+K N +KD+L +AGP+GVTH L+LS+T++   LR+ R P+GP+L F+IHEY L  DV +
Sbjct: 63  ERKANKIKDYLTMAGPLGVTHLLVLSRTDNNANLRIIRAPRGPSLHFRIHEYMLNKDVRR 122

Query: 128 SQLRPRCPQDLFKTSPLIVLSGFGTGDQ----HLKLTTIMFQNIFPAIDINTVKLSTCQR 183
            Q  P+ P   F T PL+V++ F         H  L T  FQN+FP I +    +++ +R
Sbjct: 123 LQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALLTTTFQNMFPPISVQHTNINSVKR 182

Query: 184 IVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQ----VPDLRSLQDVSDFVTK- 238
           ++LLN  +D   ID RH+ I  +PVG+SR +R  ++  +    +PDL +++D+SD+V   
Sbjct: 183 VLLLN-RRDDGYIDLRHFIISTKPVGISRPIRHLLKGEKKDSDIPDLHNVRDISDYVLHG 241

Query: 239 ---AGYGSESEADDEAATVTL---VSDLGRVNRAST-------KSAVKLQEIGPRMTLQL 285
              +G  S+SE  +E ATV +   V      N  S        + A+KL EIGPRMTL+L
Sbjct: 242 DGISGAASDSEI-EEDATVEIDRPVPTKTEENLLSASQLLKPKQQAIKLIEIGPRMTLEL 300

Query: 286 IKVEEGLCSGSIIFSEYGTVGDKKKQKGSKQENQEDDEESEEDVKGSEED 335
           IK+ E    G +++  +     K K++  +Q+N  +   + ++ +  E+D
Sbjct: 301 IKITEDAMGGKVLYHSH---VHKSKEEIKQQDNFHEQSRALKEKRKKEQD 347

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38789|SSF1_YEAST Ribosome biogenesis protein SSF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSF1 PE=1 SV=1

 Score =  185 bits (470), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 176/335 (52%), Gaps = 64/335 (19%)

Query: 32  IPKSFVFSRGKLP---GPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTH 88
           IPKS V   G+       L QL  D R++M PHTA+ LKE+K N LKDF+ + GP+GVTH
Sbjct: 22  IPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAIKLKERKSNKLKDFVVMCGPLGVTH 81

Query: 89  FLMLSKTESAP--YLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRC-PQDLFKTSPLI 145
             M +++E      L++ARTPQGPT+TF++ +YSL  D+ +   RP+    D     PL+
Sbjct: 82  LFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLL 141

Query: 146 VLSGFGTG------DQHL---KLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLI 196
           VL+GF T       DQ +   K+   MFQNIFP ++     L++ +R+ ++N +++T  I
Sbjct: 142 VLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRVFMINKDRETGEI 201

Query: 197 DFRHYSIRLQPVGVSRRLRKFVQ-----SHQVPDLRSLQDVSDFVTK---AGYGSESEAD 248
             RHY I ++ V +SR L++  +     S  VP+L   +D+S  +       Y SESE +
Sbjct: 202 SMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKEDISSLILDHDLGAYTSESEIE 261

Query: 249 DEAAT-VTLVSDLGRVNRASTKS------------------------------------- 270
           D+A   V    D+   +  S KS                                     
Sbjct: 262 DDAIVRVVDNQDVKAKHSQSLKSQRTPVEKKDNKEREKETEEEDVEMEEPKPSENLQPTP 321

Query: 271 ---AVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
              A+KL E+GPR+TL+L+K+EEG+CSG ++  E+
Sbjct: 322 RKKAIKLTELGPRLTLKLVKIEEGICSGKVLHHEF 356

Required for biogenesis of the 60S ribosomal subunit.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q12153|SSF2_YEAST Ribosome biogenesis protein SSF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSF2 PE=1 SV=1

 Score =  185 bits (469), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 175/335 (52%), Gaps = 64/335 (19%)

Query: 32  IPKSFVFSRGKLP---GPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTH 88
           IPKS V   G+       L QL  D R++M PHTA+ LKE+K N LKDF+ + GP+GVTH
Sbjct: 22  IPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAVKLKERKSNKLKDFVVMCGPLGVTH 81

Query: 89  FLMLSKTESAP--YLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRC-PQDLFKTSPLI 145
             M +++E      L++ARTPQGPT+TF++ +YSL  D+ +   RP+    D     PL+
Sbjct: 82  LFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLL 141

Query: 146 VLSGFGTG------DQHL---KLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLI 196
           VL+GF T       DQ +   K+   MFQNIFP ++     L++ +RI ++N +++T  I
Sbjct: 142 VLNGFSTSKRSDEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRIFMINKDRETGEI 201

Query: 197 DFRHYSIRLQPVGVSRRLRKFVQ-----SHQVPDLRSLQDVSDFVTK---AGYGSESEAD 248
             RHY I ++ V +SR L++  +     S  VP+L   +D+S  +       Y SESE +
Sbjct: 202 SMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKEDISSLILDHDLGAYTSESEIE 261

Query: 249 DEAATVTLVSDLGRVNRAST---------------------------------------- 268
           D+A    + +   +   + T                                        
Sbjct: 262 DDAIVRVVDNQDVKAKHSQTSLSQKTPVKMTDNEEREKGIEEEDVEMEEPKPSENSQPTP 321

Query: 269 -KSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
            K A+KL E+GPR+TL+L+K+E+G+CSG ++  E+
Sbjct: 322 RKKAIKLTELGPRLTLKLVKIEDGICSGKVLHHEF 356

Required for biogenesis of the 60S ribosomal subunit.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
449469080	344	PREDICTED: peter Pan-like protein-like [	0.952	0.927	0.850	1e-160
225437370	330	PREDICTED: peter Pan-like protein [Vitis	0.904	0.918	0.861	1e-157
224128486	327	predicted protein [Populus trichocarpa]	0.895	0.917	0.876	1e-154
224068336	297	predicted protein [Populus trichocarpa]	0.871	0.983	0.883	1e-152
255564174	341	Protein Peter pan, putative [Ricinus com	0.967	0.950	0.800	1e-151
297793739	304	brix domain-containing protein [Arabidop	0.904	0.996	0.832	1e-147
30697573	346	Peter Pan-like protein [Arabidopsis thal	0.910	0.881	0.816	1e-145
30697571	345	Peter Pan-like protein [Arabidopsis thal	0.901	0.875	0.821	1e-145
356544390	348	PREDICTED: peter Pan-like protein-like [	0.904	0.870	0.799	1e-142
363814435	336	uncharacterized protein LOC100785073 [Gl	0.904	0.901	0.783	1e-140

>gi|449469080|ref|XP_004152249.1| PREDICTED: peter Pan-like protein-like [Cucumis sativus]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 278/327 (85%), Positives = 301/327 (92%), Gaps = 8/327 (2%)

Query: 1   MARFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLP 60
           MAR  N KK+ FVK    KKQ  VDH+TG+KIPKSFVFSRGKLPGPL+QL+MDLRKLMLP
Sbjct: 1   MARIGNKKKQRFVKPIKVKKQSEVDHVTGEKIPKSFVFSRGKLPGPLKQLQMDLRKLMLP 60

Query: 61  HTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYS 120
           +TALNLKEKKRNNLKD+LNVAGPMGVTHFLMLSKTE+APYLRVARTPQGPTLTFKI EYS
Sbjct: 61  YTALNLKEKKRNNLKDYLNVAGPMGVTHFLMLSKTETAPYLRVARTPQGPTLTFKIQEYS 120

Query: 121 LAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLST 180
           LAV++AQSQLRPRCP+DLFK  PLIVLSGFGTGDQHLKL TIMFQNIFPAIDINTVKLST
Sbjct: 121 LAVEIAQSQLRPRCPKDLFKNPPLIVLSGFGTGDQHLKLATIMFQNIFPAIDINTVKLST 180

Query: 181 CQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAG 240
           CQRIVLLNYNKDTKLIDFRHYSIRLQPVGV+RRLRKFVQ+HQVPDLRSLQDVSDFVTKAG
Sbjct: 181 CQRIVLLNYNKDTKLIDFRHYSIRLQPVGVTRRLRKFVQNHQVPDLRSLQDVSDFVTKAG 240

Query: 241 YGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFS 300
           YGSESEADDEAATVTL SDLGRVN+ASTKSAVKLQEIGPR+TLQLIKVEEGLCSG IIF+
Sbjct: 241 YGSESEADDEAATVTLASDLGRVNQASTKSAVKLQEIGPRLTLQLIKVEEGLCSGGIIFN 300

Query: 301 EYGTVGDKKKQKGSKQENQEDDEESEE 327
           EYG  G+K      KQ+N+ D ++++E
Sbjct: 301 EYG--GEK------KQDNKSDKKKAQE 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437370|ref|XP_002269158.1| PREDICTED: peter Pan-like protein [Vitis vinifera] gi|297743890|emb|CBI36860.3| unnamed protein product [Vitis vinifera]

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 262/304 (86%), Positives = 291/304 (95%), Gaps = 1/304 (0%)

Query: 1   MARFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLP 60
           MARFRN+KKKGFVK  V KKQP VDH+TG+KIP S VFSRGKLPG L+QL+MDLRKLMLP
Sbjct: 1   MARFRNNKKKGFVKP-VGKKQPGVDHVTGEKIPHSIVFSRGKLPGSLKQLQMDLRKLMLP 59

Query: 61  HTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYS 120
           +TA+NLKEK+RNNLKDFLN+AGP+GVTHFLMLSKTE+APYL+VARTPQGPTLTFKIHEYS
Sbjct: 60  YTAVNLKEKRRNNLKDFLNIAGPLGVTHFLMLSKTETAPYLKVARTPQGPTLTFKIHEYS 119

Query: 121 LAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLST 180
           LAVDVAQSQLRPRCPQDLFK SPLIVLSGFG+G+QHLKLTT+MFQNIFPAID+NTVKLS+
Sbjct: 120 LAVDVAQSQLRPRCPQDLFKNSPLIVLSGFGSGEQHLKLTTVMFQNIFPAIDVNTVKLSS 179

Query: 181 CQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAG 240
           CQRIVLLNYNKDTKLIDFRHYSIRLQPVGVS+R+RKFVQ+HQVPDL++LQDVSDF+TKAG
Sbjct: 180 CQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSKRVRKFVQNHQVPDLKNLQDVSDFITKAG 239

Query: 241 YGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFS 300
           YGSESE DDEAATVTL SDLGR+N+AS+KSAVKLQEIGPRMTLQLIK+EEGLCSG +IF+
Sbjct: 240 YGSESEVDDEAATVTLASDLGRINKASSKSAVKLQEIGPRMTLQLIKIEEGLCSGGVIFN 299

Query: 301 EYGT 304
            YG 
Sbjct: 300 AYGN 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128486|ref|XP_002320344.1| predicted protein [Populus trichocarpa] gi|222861117|gb|EEE98659.1| predicted protein [Populus trichocarpa]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 263/300 (87%), Positives = 282/300 (94%)

Query: 4   FRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTA 63
           F    KK FVK   KKKQ  VDHITGDKIPKSFVF+RGKLPGPLRQL+M+LRKLMLP TA
Sbjct: 24  FIQKNKKMFVKPTSKKKQADVDHITGDKIPKSFVFARGKLPGPLRQLQMNLRKLMLPFTA 83

Query: 64  LNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAV 123
           L LKEKKRN+LKDFLNVAGPMGVTHFLMLSKTE+APYLRVARTPQGPTLTFKIHEYSLAV
Sbjct: 84  LKLKEKKRNSLKDFLNVAGPMGVTHFLMLSKTETAPYLRVARTPQGPTLTFKIHEYSLAV 143

Query: 124 DVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQR 183
           DVAQSQL PRCPQDLFK +PLIVLSGFG+G+QHLKLTT+MFQNIFPAID+NTVKLS+CQR
Sbjct: 144 DVAQSQLHPRCPQDLFKNAPLIVLSGFGSGEQHLKLTTVMFQNIFPAIDVNTVKLSSCQR 203

Query: 184 IVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGS 243
           IVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQ+ QVPDLR+LQDVSDFV+KAGYGS
Sbjct: 204 IVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQNRQVPDLRNLQDVSDFVSKAGYGS 263

Query: 244 ESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYG 303
           ESE DDEAATVTL +DLGRVN+ASTKSAVKLQEIGPRMTLQL+K+EEGLCSG +IFSEYG
Sbjct: 264 ESEGDDEAATVTLANDLGRVNKASTKSAVKLQEIGPRMTLQLVKIEEGLCSGGVIFSEYG 323

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068336|ref|XP_002302711.1| predicted protein [Populus trichocarpa] gi|222844437|gb|EEE81984.1| predicted protein [Populus trichocarpa]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 258/292 (88%), Positives = 277/292 (94%)

Query: 12  FVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKR 71
           FVK  VKKKQ  VDHITGDKIPKSFVF+RGKLPG LRQL+MDLRKLMLP+TAL LKEKKR
Sbjct: 2   FVKPIVKKKQANVDHITGDKIPKSFVFARGKLPGSLRQLQMDLRKLMLPYTALKLKEKKR 61

Query: 72  NNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLR 131
           NNLKDFLNVAGPMGV+HFL+LSKTE+APYLRVARTPQGPTLTFKIHEYSLA DVAQSQL 
Sbjct: 62  NNLKDFLNVAGPMGVSHFLILSKTETAPYLRVARTPQGPTLTFKIHEYSLAADVAQSQLH 121

Query: 132 PRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNK 191
           PRCPQDLFK +PLIVLSGFG+G+QHLKLTT+MFQ IFPAIDINTVKLS+CQRIVLLNYNK
Sbjct: 122 PRCPQDLFKNAPLIVLSGFGSGEQHLKLTTVMFQKIFPAIDINTVKLSSCQRIVLLNYNK 181

Query: 192 DTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEA 251
           DTKLIDFRHYSI+LQPVGVSRRLRKFVQ+ QVPDLR+LQDVSDFVTKAGYGSESE DDEA
Sbjct: 182 DTKLIDFRHYSIKLQPVGVSRRLRKFVQNRQVPDLRNLQDVSDFVTKAGYGSESEGDDEA 241

Query: 252 ATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYG 303
           ATVTL +DLGRVN+ASTKSAVKLQEIGPRM LQL+K+EEGLCSG +IFSEYG
Sbjct: 242 ATVTLANDLGRVNKASTKSAVKLQEIGPRMVLQLVKIEEGLCSGDVIFSEYG 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564174|ref|XP_002523084.1| Protein Peter pan, putative [Ricinus communis] gi|223537646|gb|EEF39269.1| Protein Peter pan, putative [Ricinus communis]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 261/326 (80%), Positives = 292/326 (89%), Gaps = 2/326 (0%)

Query: 1   MARFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLP 60
           MAR ++ K+K   K  VKK+   VDHITGDKIPKSFVF+RGKLPGPLRQL+MDLRKLMLP
Sbjct: 1   MARVQSKKRKFAAKPIVKKEHGNVDHITGDKIPKSFVFARGKLPGPLRQLQMDLRKLMLP 60

Query: 61  HTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYS 120
           +TALNLKEKKRN L+DFLNVAGPMGVTHFLMLSKT +APYLRVARTPQGPTLTFKI EYS
Sbjct: 61  YTALNLKEKKRNTLRDFLNVAGPMGVTHFLMLSKTATAPYLRVARTPQGPTLTFKILEYS 120

Query: 121 LAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLST 180
            A+DVAQSQLRPRCPQDLFK  PLIVLSGFG+ +QHLKLT IMFQNIFPAID+NTVKLS+
Sbjct: 121 TALDVAQSQLRPRCPQDLFKNPPLIVLSGFGS-EQHLKLTAIMFQNIFPAIDVNTVKLSS 179

Query: 181 CQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAG 240
           CQRIVLL YNKDTK  DFRHYSIRLQPVGV+RR+RKFVQ+H+VP+L   QDVSDF+TK+G
Sbjct: 180 CQRIVLLTYNKDTKHTDFRHYSIRLQPVGVTRRIRKFVQNHEVPNLSGHQDVSDFITKSG 239

Query: 241 YGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFS 300
           YGSESEAD+EAATVTL +DL RVNRASTKSAVKLQE+GPRMTLQLIKVEEGLCSG++IF+
Sbjct: 240 YGSESEADEEAATVTLANDLSRVNRASTKSAVKLQELGPRMTLQLIKVEEGLCSGALIFN 299

Query: 301 EYGTVGDKKKQKGSKQENQEDDEESE 326
           EYGT  DK KQ+  + +NQED EE+ 
Sbjct: 300 EYGTTSDKTKQQ-DENKNQEDSEENH 324

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793739|ref|XP_002864754.1| brix domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297310589|gb|EFH41013.1| brix domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/304 (83%), Positives = 279/304 (91%), Gaps = 1/304 (0%)

Query: 1   MARFRNSKK-KGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
           M RF+N+KK +  VK   KK Q  V H+TGDKIPKSFVFSR KLPGP++QL+MDLRKLML
Sbjct: 1   MGRFKNNKKSRVIVKPIPKKNQEDVSHVTGDKIPKSFVFSRMKLPGPVKQLQMDLRKLML 60

Query: 60  PHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
           P+TAL+LKEKKRN L+DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+Y
Sbjct: 61  PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120

Query: 120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLS 179
           SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTVKLS
Sbjct: 121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTVKLS 180

Query: 180 TCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKA 239
           TCQR+VLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RKFVQ+HQVPDLR+LQDVSDFVTKA
Sbjct: 181 TCQRLVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKFVQNHQVPDLRNLQDVSDFVTKA 240

Query: 240 GYGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIF 299
           GYGSESE D+EAATVTL SDLGRVN+ STKSAVKLQEIGPRMT+QL+KVEEGLC+G IIF
Sbjct: 241 GYGSESEGDEEAATVTLSSDLGRVNKGSTKSAVKLQEIGPRMTMQLVKVEEGLCTGGIIF 300

Query: 300 SEYG 303
           SEYG
Sbjct: 301 SEYG 304

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697573|ref|NP_568939.2| Peter Pan-like protein [Arabidopsis thaliana] gi|42573760|ref|NP_974976.1| Peter Pan-like protein [Arabidopsis thaliana] gi|10176870|dbj|BAB10077.1| unnamed protein product [Arabidopsis thaliana] gi|332010132|gb|AED97515.1| Peter Pan-like protein [Arabidopsis thaliana] gi|332010133|gb|AED97516.1| Peter Pan-like protein [Arabidopsis thaliana]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 250/306 (81%), Positives = 277/306 (90%), Gaps = 1/306 (0%)

Query: 1   MARFRNSKKKGFV-KSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
           M RF+N+KK   + K   KK Q  V H+TGDKIPKSFVFSR KL GP++QL+MDLRKLML
Sbjct: 1   MGRFKNNKKSRVIGKPIAKKNQEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLML 60

Query: 60  PHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
           P+TAL+LKEKKRN L+DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+Y
Sbjct: 61  PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120

Query: 120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLS 179
           SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTVKLS
Sbjct: 121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTVKLS 180

Query: 180 TCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKA 239
           TCQR+VLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RKFVQ+HQVPDLR+LQDVSDFVTKA
Sbjct: 181 TCQRLVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKFVQNHQVPDLRNLQDVSDFVTKA 240

Query: 240 GYGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIF 299
           GYGSESE D+EAATVTL SDLGRVN+ +TKSAVKLQEIGPRMT+QL+KVEEGLC+G IIF
Sbjct: 241 GYGSESEGDEEAATVTLSSDLGRVNKGATKSAVKLQEIGPRMTMQLVKVEEGLCTGGIIF 300

Query: 300 SEYGTV 305
           SEY  V
Sbjct: 301 SEYEDV 306

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697571|ref|NP_851242.1| Peter Pan-like protein [Arabidopsis thaliana] gi|24212091|sp|Q9ASU7.1|PPAN_ARATH RecName: Full=Peter Pan-like protein gi|13605686|gb|AAK32836.1|AF361824_1 AT5g61770/mac9_70 [Arabidopsis thaliana] gi|15810077|gb|AAL06964.1| At1g06730/F4H5_22 [Arabidopsis thaliana] gi|17979000|gb|AAL47460.1| AT5g61770/mac9_70 [Arabidopsis thaliana] gi|332010131|gb|AED97514.1| Peter Pan-like protein [Arabidopsis thaliana]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 249/303 (82%), Positives = 276/303 (91%), Gaps = 1/303 (0%)

Query: 1   MARFRNSKKKGFV-KSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
           M RF+N+KK   + K   KK Q  V H+TGDKIPKSFVFSR KL GP++QL+MDLRKLML
Sbjct: 1   MGRFKNNKKSRVIGKPIAKKNQEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLML 60

Query: 60  PHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
           P+TAL+LKEKKRN L+DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+Y
Sbjct: 61  PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120

Query: 120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLS 179
           SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTVKLS
Sbjct: 121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTVKLS 180

Query: 180 TCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKA 239
           TCQR+VLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RKFVQ+HQVPDLR+LQDVSDFVTKA
Sbjct: 181 TCQRLVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKFVQNHQVPDLRNLQDVSDFVTKA 240

Query: 240 GYGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIF 299
           GYGSESE D+EAATVTL SDLGRVN+ +TKSAVKLQEIGPRMT+QL+KVEEGLC+G IIF
Sbjct: 241 GYGSESEGDEEAATVTLSSDLGRVNKGATKSAVKLQEIGPRMTMQLVKVEEGLCTGGIIF 300

Query: 300 SEY 302
           SEY
Sbjct: 301 SEY 303

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544390|ref|XP_003540635.1| PREDICTED: peter Pan-like protein-like [Glycine max]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 247/309 (79%), Positives = 275/309 (88%), Gaps = 6/309 (1%)

Query: 8   KKKGFVKSFVKKK------QPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPH 61
           KK+GF +  V KK      QP+VD ITG KIPKSFVFSRGKLP PL+QL+MDLRKLMLP+
Sbjct: 4   KKQGFRRPVVIKKPKQPQEQPSVDPITGKKIPKSFVFSRGKLPAPLKQLQMDLRKLMLPY 63

Query: 62  TALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSL 121
           TAL+L+EKKRNNL+DFLNVAGPMGVTHF +LSKT ++ YLRVA TPQGPTLTFKIHEYSL
Sbjct: 64  TALSLREKKRNNLRDFLNVAGPMGVTHFFILSKTATSSYLRVATTPQGPTLTFKIHEYSL 123

Query: 122 AVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTC 181
           A D+A+SQL PRCP+DLFK S LIVLSGF +GD  L+LTT MFQNIFP ID+ TVKLSTC
Sbjct: 124 AADIARSQLHPRCPKDLFKNSALIVLSGFVSGDPPLQLTTNMFQNIFPTIDVKTVKLSTC 183

Query: 182 QRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGY 241
           QRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RK VQSHQVPDLR+LQDVSDFVTKAGY
Sbjct: 184 QRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKLVQSHQVPDLRNLQDVSDFVTKAGY 243

Query: 242 GSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSE 301
           GSESEAD+EAATVTL SD+GRVNRASTKSAVKLQE+GPRMTLQL+K+E+GLCSG ++FSE
Sbjct: 244 GSESEADEEAATVTLSSDIGRVNRASTKSAVKLQEVGPRMTLQLVKIEKGLCSGEVLFSE 303

Query: 302 YGTVGDKKK 310
           YG  G K K
Sbjct: 304 YGKAGGKGK 312

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814435|ref|NP_001242597.1| uncharacterized protein LOC100785073 [Glycine max] gi|255644918|gb|ACU22959.1| unknown [Glycine max]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 242/309 (78%), Positives = 274/309 (88%), Gaps = 6/309 (1%)

Query: 8   KKKGFVKSFVKKK------QPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPH 61
           KK+GF +  + KK      QP+VD ITG KIPKSFVFSRGKLP P +QL+MDLRKLMLP+
Sbjct: 4   KKQGFRRPVIIKKPKQPQEQPSVDPITGKKIPKSFVFSRGKLPAPPKQLQMDLRKLMLPY 63

Query: 62  TALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSL 121
           TAL+L+EKKRNNL+DFLNVAGPMGVTHF +LSKT ++PYLRVA TPQGPTLTFKIHEYSL
Sbjct: 64  TALSLREKKRNNLRDFLNVAGPMGVTHFFILSKTATSPYLRVATTPQGPTLTFKIHEYSL 123

Query: 122 AVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTC 181
           A D+A+SQL PRCP+DLFK+S LIVLSGF +GD  L+LTT MFQNIFP ID+ TVKLSTC
Sbjct: 124 AADIARSQLHPRCPKDLFKSSALIVLSGFVSGDPPLQLTTNMFQNIFPTIDVKTVKLSTC 183

Query: 182 QRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGY 241
           QRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RK VQSHQVPDLR+L DVS+FVTKAGY
Sbjct: 184 QRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKLVQSHQVPDLRNLLDVSNFVTKAGY 243

Query: 242 GSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSE 301
           GSESEAD+EAATVTL SD+GRVNRASTKSAVKL E+GPRMTLQL+++E+GLCSG ++FSE
Sbjct: 244 GSESEADEEAATVTLSSDIGRVNRASTKSAVKLHEVGPRMTLQLVRIEKGLCSGEVLFSE 303

Query: 302 YGTVGDKKK 310
           YG  G K K
Sbjct: 304 YGKAGGKGK 312

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
TAIR|locus:2159213	346	PPAN "PETER PAN-like protein"	0.928	0.898	0.766	1.2e-122
MGI|MGI:2178445	470	Ppan "peter pan homolog (Droso	0.802	0.572	0.457	1e-59
UNIPROTKB|E2RGE3	559	PPAN "Uncharacterized protein"	0.802	0.481	0.465	1.7e-59
UNIPROTKB|Q9NQ55	473	PPAN "Suppressor of SWI4 1 hom	0.829	0.587	0.450	5.1e-58
FB|FBgn0010770	460	ppan "peter pan" [Drosophila m	0.829	0.604	0.402	1.1e-53
UNIPROTKB|A8MV53	420	PPAN "HCG2033702, isoform CRA_	0.755	0.602	0.447	1.5e-51
WB|WBGene00003062	573	lpd-6 [Caenorhabditis elegans	0.805	0.471	0.363	1.1e-46
SGD|S000001108	453	SSF1 "Constituent of 66S pre-r	0.656	0.485	0.358	8.5e-43
SGD|S000002720	453	SSF2 "Protein required for rib	0.740	0.547	0.343	2.2e-42
UNIPROTKB|G4NEI7	474	MGG_00087 "Ribosome biogenesis	0.549	0.388	0.378	1.7e-40

TAIR|locus:2159213 PPAN "PETER PAN-like protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 1206 (429.6 bits), Expect = 1.2e-122, P = 1.2e-122
 Identities = 240/313 (76%), Positives = 264/313 (84%)

Query:     1 MARFRNXXXXXXXXX-XXXXXQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
             M RF+N               Q  V H+TGDKIPKSFVFSR KL GP++QL+MDLRKLML
Sbjct:     1 MGRFKNNKKSRVIGKPIAKKNQEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLML 60

Query:    60 PHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
             P+TA            DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+Y
Sbjct:    61 PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120

Query:   120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLS 179
             SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTVKLS
Sbjct:   121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTVKLS 180

Query:   180 TCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKA 239
             TCQR+VLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RKFVQ+HQVPDLR+LQDVSDFVTKA
Sbjct:   181 TCQRLVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKFVQNHQVPDLRNLQDVSDFVTKA 240

Query:   240 GYGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIF 299
             GYGSESE D+EAATVTL SDLGRVN+ +TKSAVKLQEIGPRMT+QL+KVEEGLC+G IIF
Sbjct:   241 GYGSESEGDEEAATVTLSSDLGRVNKGATKSAVKLQEIGPRMTMQLVKVEEGLCTGGIIF 300

Query:   300 SEYGTVGDKKKQK 312
             SEY  V D KK+K
Sbjct:   301 SEYEDV-DGKKEK 312

GO:0005634 "nucleus" evidence=ISM

MGI|MGI:2178445 Ppan "peter pan homolog (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 125/273 (45%), Positives = 184/273 (67%)

Query:    33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLML 92
             P SFVF+RG+    +RQL +D+R++M P TA            D + VAGP+GVTHFL+L
Sbjct:    29 PHSFVFTRGRAGRNVRQLSLDVRRVMEPLTATRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88

Query:    93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
             +KT+++ YL++ R P GPTLTF+I +Y+L  DV  S  R R  +  F   PL+VL+ FG 
Sbjct:    89 TKTDNSVYLKLMRLPGGPTLTFQISKYTLIRDVVSSLRRHRMHEQQFNHPPLLVLNSFGP 148

Query:   153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
                H+KL   MFQN+FP+I+++TV L+T +R +L+NYN D++ +DFRHYS+++ PVG SR
Sbjct:   149 QGMHIKLMATMFQNLFPSINVHTVNLNTIKRCLLINYNPDSQELDFRHYSVKVVPVGASR 208

Query:   213 RLRKFVQSHQVPDLRSLQDVSDFV-TKAGYG-SESEADDEAATVTLVSDL-GRVNRASTK 269
              ++K +Q  + P++  LQD+S+ + T  G   SE E D E  T  L   + GR N  + +
Sbjct:   209 GMKKLLQE-KFPNMSRLQDISELLATGVGLSDSEVEPDGEHNTTELPQAVAGRGNMQAQQ 267

Query:   270 SAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
             SAV+L EIGPRMTLQLIK++EG+ +G+++F  +
Sbjct:   268 SAVRLTEIGPRMTLQLIKIQEGVGNGNVLFHSF 300

GO:0001560 "regulation of cell growth by extracellular stimulus" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

UNIPROTKB|E2RGE3 PPAN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 127/273 (46%), Positives = 182/273 (66%)

Query:    33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLML 92
             P SFVF+RG+    +RQL +DLR++M P TA            D + VAGP+GVTHFL+L
Sbjct:    29 PHSFVFARGRAGRGVRQLSLDLRRVMEPLTATRLQIRKKNTLKDCVAVAGPLGVTHFLIL 88

Query:    93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
             SKTE+  Y ++ R P GPTLTF+I++Y+L  DV  S  R R  +  F   PL+VL+ FG 
Sbjct:    89 SKTETNIYFKLMRLPGGPTLTFRINKYTLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGP 148

Query:   153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
                H+KL   MFQN+FP+I+++ V L+T +R +L+NYN D++ +DFRHYSI++ PVG SR
Sbjct:   149 HGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLINYNPDSQELDFRHYSIKVVPVGASR 208

Query:   213 RLRKFVQSHQVPDLRSLQDVSDFV-TKAGYG-SESEADDEAATVTLVSDL-GRVNRASTK 269
              ++K +Q  + P++  LQD+S+ + T AG   SE+E D E     L   + GR N  + +
Sbjct:   209 GMKKLLQE-KFPNMSRLQDISELLATGAGLSESEAEPDGEHNITELPQAVAGRGNMRAQQ 267

Query:   270 SAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
             SAV+L EIGPRMTLQLIK++EG+  G+++F  +
Sbjct:   268 SAVRLTEIGPRMTLQLIKIQEGVGEGNVLFHSF 300

GO:0016021 "integral to membrane" evidence=IEA

GO:0045028 "G-protein coupled purinergic nucleotide receptor activity" evidence=IEA

UNIPROTKB|Q9NQ55 PPAN "Suppressor of SWI4 1 homolog" [Homo sapiens (taxid:9606)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 127/282 (45%), Positives = 184/282 (65%)

Query:    33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLML 92
             P SFVF+RG     +RQL +D+R++M P TA            D + VAGP+GVTHFL+L
Sbjct:    29 PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88

Query:    93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
             SKTE+  Y ++ R P GPTLTF++ +YSL  DV  S  R R  +  F   PL+VL+ FG 
Sbjct:    89 SKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGP 148

Query:   153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
                H+KL   MFQN+FP+I+++ V L+T +R +L++YN D++ +DFRHYSI++ PVG SR
Sbjct:   149 HGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIKVVPVGASR 208

Query:   213 RLRKFVQSHQVPDLRSLQDVSDFV-TKAGYG-SESEAD-DEAATVTLVSDLGRVNRASTK 269
              ++K +Q  + P++  LQD+S+ + T AG   SE+E D D   T    +  GR N  + +
Sbjct:   209 GMKKLLQE-KFPNMSRLQDISELLATGAGLSESEAEPDGDHNITELPQAVAGRGNMRAQQ 267

Query:   270 SAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGTVGDKKKQ 311
             SAV+L EIGPRMTLQLIKV+EG+  G ++F  + +  +++ Q
Sbjct:   268 SAVRLTEIGPRMTLQLIKVQEGVGEGKVMFHSFVSKTEEELQ 309

GO:0005634 "nucleus" evidence=IDA

GO:0008380 "RNA splicing" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

FB|FBgn0010770 ppan "peter pan" [Drosophila melanogaster (taxid:7227)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 113/281 (40%), Positives = 173/281 (61%)

Query:    33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLML 92
             P SFV  RG     +  L +D R++M P TA            DF++++    V+H  + 
Sbjct:    28 PHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLREKRMNRIKDFVSLSSFFHVSHMGIF 87

Query:    93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
             +K  +    +V R P+GP+LTFK+H+++LA DV     +     D FK +PL++++ F  
Sbjct:    88 NKASTQLSFKVVRLPRGPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIMNNFSG 147

Query:   153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
               +HLKL    FQN+FP+I++ TV + T +R VL +YN DTKL++ RHYS+++ PVG+ R
Sbjct:   148 DGKHLKLMATTFQNMFPSINLATVNIGTIRRCVLFSYNPDTKLVEMRHYSVQVVPVGLKR 207

Query:   213 RLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEA-DDEAATVTLVSDL-GRVNRASTKS 270
              ++K V+   VP+L    +V DFVTK GY SESEA DDE + V L   L  + N    KS
Sbjct:   208 AVQKIVKG-TVPNLGKCNEVVDFVTKDGYASESEAEDDEQSHVVLAQTLKSKGNLEDKKS 266

Query:   271 AVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGTVGDKKKQ 311
             ++KL EIGPR+T+QLIK+EEGL +G +++ ++    + +K+
Sbjct:   267 SIKLHEIGPRLTMQLIKIEEGLLTGEVLYHDHVVKTEDEKE 307

GO:0007444 "imaginal disc development" evidence=IMP

GO:0002164 "larval development" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|A8MV53 PPAN "HCG2033702, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 115/257 (44%), Positives = 166/257 (64%)

Query:    58 MLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIH 117
             M P TA            D + VAGP+GVTHFL+LSKTE+  Y ++ R P GPTLTF++ 
Sbjct:     1 MEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLILSKTETNVYFKLMRLPGGPTLTFQVK 60

Query:   118 EYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVK 177
             +YSL  DV  S  R R  +  F   PL+VL+ FG    H+KL   MFQN+FP+I+++ V 
Sbjct:    61 KYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGPHGMHVKLMATMFQNLFPSINVHKVN 120

Query:   178 LSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFV- 236
             L+T +R +L++YN D++ +DFRHYSI++ PVG SR ++K +Q  + P++  LQD+S+ + 
Sbjct:   121 LNTIKRCLLIDYNPDSQELDFRHYSIKVVPVGASRGMKKLLQE-KFPNMSRLQDISELLA 179

Query:   237 TKAGYG-SESEAD-DEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCS 294
             T AG   SE+E D D   T    +  GR N  + +SAV+L EIGPRMTLQLIKV+EG+  
Sbjct:   180 TGAGLSESEAEPDGDHNITELPQAVAGRGNMRAQQSAVRLTEIGPRMTLQLIKVQEGVGE 239

Query:   295 GSIIFSEYGTVGDKKKQ 311
             G ++F  + +  +++ Q
Sbjct:   240 GKVMFHSFVSKTEEELQ 256

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

WB|WBGene00003062 lpd-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 101/278 (36%), Positives = 171/278 (61%)

Query:    33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLML 92
             P   V  RG +   ++ LE DLR L+ P+TA            DF+     +GVT+ ++L
Sbjct:    56 PHCLVIHRGDVGKYVKGLESDLRNLVEPNTAKNLKILKRNNIKDFIVNGAVLGVTNMMVL 115

Query:    93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
             + ++++  LR+ R  QGPTL+FK+ +YSLA  V   Q RP     LFK+SPL+V++GFG 
Sbjct:   116 TSSDASLQLRMMRFSQGPTLSFKVKQYSLARHVVNCQKRPVATDKLFKSSPLVVMNGFGD 175

Query:   153 GDQ-HLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVS 211
             G Q HL L     QN+FP+I+++T++L   +R ++++Y+++T  I  RH++IR+   G++
Sbjct:   176 GTQKHLSLVQTFIQNMFPSINVDTIQLGNLKRCLIVSYDEETDEIQMRHFAIRVVASGLN 235

Query:   212 RRLRKFVQSHQ-----VPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDL--GRVN 264
             + ++K +Q+ +     +P+L + +D+SD+    G  S+SE + +   V L  D+  GR  
Sbjct:   236 KSVKKLMQAEKTMGKNIPNLSTYKDISDYFLNPGQLSDSEFEGDQQEVELPQDISEGRGC 295

Query:   265 RASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
                 KS V+L EIGPR+TL+L+K+EEG+  G +++ ++
Sbjct:   296 GVGQKSNVRLHEIGPRLTLELVKIEEGIDEGEVLYHKH 333

GO:0016021 "integral to membrane" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

SGD|S000001108 SSF1 "Constituent of 66S pre-ribosomal particles" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 346 (126.9 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
 Identities = 87/243 (35%), Positives = 132/243 (54%)

Query:    32 IPKSFVFSRGKLP---GPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTH 88
             IPKS V   G+       L QL  D R++M PHTA            DF+ + GP+GVTH
Sbjct:    22 IPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAIKLKERKSNKLKDFVVMCGPLGVTH 81

Query:    89 FLMLSKTESAPY--LRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRC-PQDLFKTSPLI 145
               M +++E      L++ARTPQGPT+TF++ +YSL  D+ +   RP+    D     PL+
Sbjct:    82 LFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLL 141

Query:   146 VLSGFGTG------DQHL---KLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLI 196
             VL+GF T       DQ +   K+   MFQNIFP ++     L++ +R+ ++N +++T  I
Sbjct:   142 VLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRVFMINKDRETGEI 201

Query:   197 DFRHYSIRLQPVGVSRRLRKFVQ-----SHQVPDLRSLQDVSDFVTK---AGYGSESEAD 248
               RHY I ++ V +SR L++  +     S  VP+L   +D+S  +       Y SESE +
Sbjct:   202 SMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKEDISSLILDHDLGAYTSESEIE 261

Query:   249 DEA 251
             D+A
Sbjct:   262 DDA 264

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0000027 "ribosomal large subunit assembly" evidence=IMP;IPI

GO:0005730 "nucleolus" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA

GO:0019843 "rRNA binding" evidence=IPI

GO:0008361 "regulation of cell size" evidence=IMP

GO:0000747 "conjugation with cellular fusion" evidence=IGI

SGD|S000002720 SSF2 "Protein required for ribosomal large subunit maturation" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 348 (127.6 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
 Identities = 94/274 (34%), Positives = 146/274 (53%)

Query:    32 IPKSFVFSRGKLP---GPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTH 88
             IPKS V   G+       L QL  D R++M PHTA            DF+ + GP+GVTH
Sbjct:    22 IPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAVKLKERKSNKLKDFVVMCGPLGVTH 81

Query:    89 FLMLSKTESAPY--LRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRC-PQDLFKTSPLI 145
               M +++E      L++ARTPQGPT+TF++ +YSL  D+ +   RP+    D     PL+
Sbjct:    82 LFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLL 141

Query:   146 VLSGFGTG------DQHL---KLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLI 196
             VL+GF T       DQ +   K+   MFQNIFP ++     L++ +RI ++N +++T  I
Sbjct:   142 VLNGFSTSKRSDEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRIFMINKDRETGEI 201

Query:   197 DFRHYSIRLQPVGVSRRLRKFVQ-----SHQVPDLRSLQDVSDFVTK---AGYGSESEAD 248
               RHY I ++ V +SR L++  +     S  VP+L   +D+S  +       Y SESE +
Sbjct:   202 SMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKEDISSLILDHDLGAYTSESEIE 261

Query:   249 DEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMT 282
             D+A  +  V D   V    +++++  Q+   +MT
Sbjct:   262 DDA--IVRVVDNQDVKAKHSQTSLS-QKTPVKMT 292

GO:0005730 "nucleolus" evidence=IEA;ISS;IDA

GO:0019843 "rRNA binding" evidence=IPI

GO:0000027 "ribosomal large subunit assembly" evidence=ISS;IMP

GO:0000747 "conjugation with cellular fusion" evidence=IGI

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|G4NEI7 MGG_00087 "Ribosome biogenesis protein SSF1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 327 (120.2 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
 Identities = 76/201 (37%), Positives = 118/201 (58%)

Query:    33 PKSFVF--SRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFL 90
             PKS V     G++   + QL  D+R++M P TA            D+L + GP+GVTH L
Sbjct:    34 PKSMVIRIGAGEVGSSVSQLATDVRRVMEPGTASRLKERRANKLRDYLVMCGPLGVTHLL 93

Query:    91 MLSKTESAPY-LRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSG 149
             + S++ES    LRVA TP+GPTL F++ +YSL  DV +SQ RP+     F TSPL+V++ 
Sbjct:    94 LFSRSESGNVNLRVALTPRGPTLHFRVEKYSLTKDVQKSQRRPKGQGKEFVTSPLLVMNN 153

Query:   150 FGTGD--------QHLK-LTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKL----- 195
             F +          +HL+ LTT +FQ++F  I+     L + +R++L+N  +  ++     
Sbjct:   154 FSSSSADAPSKTPKHLESLTTTVFQSLFAPINPQKTSLKSIRRVLLMNREQSKEMDGSFI 213

Query:   196 IDFRHYSIRLQPVGVSRRLRK 216
             IDFRHY+I  +P G+S+ L++
Sbjct:   214 IDFRHYAITTKPTGISKPLKR 234

GO:0000027 "ribosomal large subunit assembly" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0019843 "rRNA binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O14206	YDD3_SCHPO	No assigned EC number	0.3742	0.9552	0.8226	yes	no
Q9ASU7	PPAN_ARATH	No assigned EC number	0.8217	0.9014	0.8753	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028006001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (318 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00028481001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (316 aa)				•	•		•		0.850
	GSVIVG00021672001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (315 aa)				•	•		•		0.825
	GSVIVG00033408001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)				•	•				0.809
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)				•	•				0.799
	GSVIVG00020673001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)				•	•				0.785
	GSVIVG00005498001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_152, whole genome sho [...] (293 aa)				•					0.746
	GSVIVG00038815001	SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)				•					0.742
	GSVIVG00019376001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)				•			•		0.741
	GSVIVG00036355001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (842 aa)				•					0.734
	GSVIVG00007719001	SubName- Full=Chromosome chr3 scaffold_199, whole genome shotgun sequence; (387 aa)				•			•		0.725

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	335
pfam04427	176	pfam04427, Brix, Brix domain	1e-35
smart00879	180	smart00879, Brix, The Brix domain is found in a nu	4e-33

>gnl|CDD|218084 pfam04427, Brix, Brix domain

 Score =  126 bits (319), Expect = 1e-35
 Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 15/177 (8%)

Query: 37  VFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTE 96
           + +  K    LRQL  DLR L     A  L   K+  LKD L  AG  G T  L+  + +
Sbjct: 1   ITTSRKPSKRLRQLAKDLRLLF--PNAKKLNRGKKK-LKDLLEFAGEKGDTSLLVFGEHK 57

Query: 97  SAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQH 156
               L + R P GPTL F+I    L  D+       +       + PL+V +GF      
Sbjct: 58  KPLNLTIGRLPNGPTLEFRISNVKLLKDIKGKGKGNKG------SRPLLVFNGFFFTRLG 111

Query: 157 LKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHY----SIRLQPVG 209
           LKL   + Q++FP  +++ + L    R++  +  +DT  I FRHY     + LQ +G
Sbjct: 112 LKLIKELLQDLFPGPNVHKIPLKGGDRVITFSNQRDT--IFFRHYRYKKKVELQEIG 166

Length = 176

>gnl|CDD|214879 smart00879, Brix, The Brix domain is found in a number of eukaryotic proteins

 Score =  120 bits (303), Expect = 4e-33
 Identities = 49/181 (27%), Positives = 75/181 (41%), Gaps = 12/181 (6%)

Query: 36  FVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKT 95
            + +  K     RQL  DLR+L  P T +N  + K N L +F +  G       ++   +
Sbjct: 1   LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKG--NTDLLVVFESS 58

Query: 96  ESAP--YLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTG 153
                  L + R P GPTL FKI   SL  ++   +        L  + PL++ + F T 
Sbjct: 59  SKGRPLNLTIYRLPNGPTLDFKILNVSLRKELKGFKTGN----CLTGSRPLLIFNNFFTE 114

Query: 154 DQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRR 213
                L   +FQ++FP    +   L   +R+V  +   D   I FRHY I+         
Sbjct: 115 LGK--LIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDY--IFFRHYRIKFGKKKPRVE 170

Query: 214 L 214
           L
Sbjct: 171 L 171

Members include SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	335
KOG2963	405	consensus RNA-binding protein required for 60S rib	100.0
KOG2971	299	consensus RNA-binding protein required for biogene	100.0
COG5154	283	BRX1 RNA-binding protein required for 60S ribosoma	100.0
PF04427	191	Brix: Brix domain; InterPro: IPR007109 The Brix do	100.0
KOG2780	302	consensus Ribosome biogenesis protein RPF1, contai	100.0
KOG2781	290	consensus U3 small nucleolar ribonucleoprotein (sn	100.0
smart00879	180	Brix Brix domain. The Brix domain is found in a nu	100.0
KOG3031	307	consensus Protein required for biogenesis of the r	99.93
COG2136	191	IMP4 Predicted exosome subunit/U3 small nucleolar	99.8
PRK03972	208	ribosomal biogenesis protein; Validated	99.65
COG5106	316	RPF2 Uncharacterized conserved protein [Function u	99.57
PRK00933	165	ribosomal biogenesis protein; Validated	94.8

>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.7e-81  Score=593.45  Aligned_cols=293  Identities=53%  Similarity=0.869  Sum_probs=272.6

Q ss_pred             hhccCCCCCCCCCCCCCcEEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEEEeeC
Q 019826           17 VKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTE   96 (335)
Q Consensus        17 ~k~~~~~~~~~~~~~~Pk~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~k   96 (335)
                      .+.......+.++...|.++|+++|-++..+++|..|||+||.||||.+|+++|.|+||||+.+|+++|+|||++|+.+.
T Consensus        10 ~~aq~~~~~e~~i~~~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~iKDfv~~~gplGVTH~l~lskt~   89 (405)
T KOG2963|consen   10 THAQFTPEQEIEIAKSPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNKLKDFVVMSGPLGVTHLLMLSKTE   89 (405)
T ss_pred             hhhhcCccchhhcccCceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhhhhhHHhhcccccceEEEEEeccc
Confidence            33344556677888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCeEEEEEecceehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCc-hhhHHHHHHHHhcCCCCCCCc
Q 019826           97 SAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGD-QHLKLTTIMFQNIFPAIDINT  175 (335)
Q Consensus        97 k~~~L~I~rlP~GPTl~F~I~ny~~~~di~~~~k~~~~~g~~~~s~PlLIfngF~t~~-~~lkli~~lfq~mFp~~~v~~  175 (335)
                      ...+|+|+|+|.|||++|+|..|++.+||...++||+++...|+++||||||||++.. +|++++..|||+|||++++++
T Consensus        90 ~nlslki~R~PqGPTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNgFg~~~~~HlkL~~t~FQNmFPsInv~t  169 (405)
T KOG2963|consen   90 TNLSLKIARTPQGPTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNGFGTSGRKHLKLMTTMFQNMFPSINVAT  169 (405)
T ss_pred             CceeEEEEecCCCCceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEccCCCCcchhHHHHHHHHHHcCCCcCcce
Confidence            9999999999999999999999999999999999999997779999999999999976 799999999999999999999


Q ss_pred             ccCCCCCeEEEEeeecCCCeEEEEEEEEEeecccchhhhHhhhhccc----CCCCccccchhHHhhhcC-CCCCCccccc
Q 019826          176 VKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQ----VPDLRSLQDVSDFVTKAG-YGSESEADDE  250 (335)
Q Consensus       176 ~~l~~~~rVilf~~~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~----~pnL~~~~dis~~~~~~~-~~sese~e~~  250 (335)
                      ++|..|+||++++|+.+++.|.||||.|...++|+||+||+|+++++    +|||++++|||||+.+++ |+||||.|++
T Consensus       170 vnlntikRcllinyn~dt~eIdmRHysI~vvpVGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~~g~~~seSE~e~d  249 (405)
T KOG2963|consen  170 VNLNTIKRCLLINYNRDTGEIDMRHYSIRVVPVGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLKGGLYASESEIEDD  249 (405)
T ss_pred             eeccceeEEEEEecCCCCCeeeeeeeEEEEEecccchHHHHHHhhhcccCCCCCchhhhhHHHHhcCCcccccccccccc
Confidence            99999999999999999999999999999999999999999999875    599999999999999877 9999998876


Q ss_pred             cce-e----------eeeccc-ccccccCcccceeeEEecccceeeeeEeecccCccceeeEeccccchhh
Q 019826          251 AAT-V----------TLVSDL-GRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGTVGDKK  309 (335)
Q Consensus       251 ~~~-v----------~~~~~~-~~~~~~~~~~~v~L~EIGPR~tLkL~kIeeG~~~G~vlyh~~v~kt~~~  309 (335)
                      +.+ |          +||+.. ++++...++++|+|+||||||||+|+||+||+|+|+||||.||.||+++
T Consensus       250 ~~~~i~~~~~~~~eveL~q~~~s~g~~~~qksaikL~EIGPRlTlqLvKIeEGi~~GkVlyH~hv~Kt~eE  320 (405)
T KOG2963|consen  250 ATVRIVDNQDVKEEVELPQPKASRGNQPPQKSAIKLTEIGPRLTLQLVKIEEGICEGKVLYHEHVQKTEEE  320 (405)
T ss_pred             cceEEeccccchhhhhccccccccCCCcccccceeeEeecccceEEEEEeeccccccceEEeehhcCCHHH
Confidence            553 2          356654 6667778899999999999999999999999999999999999999943

>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.5e-45  Score=336.00  Aligned_cols=201  Identities=24%  Similarity=0.404  Sum_probs=184.0

Q ss_pred             CcEEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEE-EeeCCCCcEEEEeCCCCCe
Q 019826           33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML-SKTESAPYLRVARTPQGPT  111 (335)
Q Consensus        33 Pk~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livf-s~~kk~~~L~I~rlP~GPT  111 (335)
                      -++||+++++++.+.||||+||..| +||+....+..++..+..+.++|...+|+.+++| ++.++++||||+..|+|||
T Consensus        50 ~rvlv~ssRgis~R~RhLm~di~~L-lph~k~dsk~d~~k~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~GpS  128 (299)
T KOG2971|consen   50 ERVLVLSSRGISFRTRHLMKDISSL-LPHSKKDSKLDRKKKLGVLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGPS  128 (299)
T ss_pred             eeEEEEecCCchHHHHHHHHHHHHh-cccccccchhhhcchHHHHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCCc
Confidence            3799999999999999999999999 6999988888877889999999999999999999 6666679999999999999


Q ss_pred             EEEEEecceehhhhhhhcCCCCCCCCCCC-CccEEEecC-CCCCchhhHHHHHHHHhcCCCCCCCcccCCCCCeEEEEee
Q 019826          112 LTFKIHEYSLAVDVAQSQLRPRCPQDLFK-TSPLIVLSG-FGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNY  189 (335)
Q Consensus       112 l~F~I~ny~~~~di~~~~k~~~~~g~~~~-s~PlLIfng-F~t~~~~lkli~~lfq~mFp~~~v~~~~l~~~~rVilf~~  189 (335)
                      +.|.|+|.+||.|+..+       |||++ ++|+|.|+. |.+ .+|++++++||++.|..|+.++.+.+++|||++|++
T Consensus       129 vkFlv~n~hTM~Elkmt-------gN~lkgsrplLsFd~~Fd~-~pHlkl~Kell~q~fgiP~~hrkSkpf~Dhvf~Fsi  200 (299)
T KOG2971|consen  129 VKFLVHNVHTMAELKMT-------GNCLKGSRPLLSFDKAFDE-LPHLKLLKELLEQIFGIPKHHRKSKPFVDHVFTFSI  200 (299)
T ss_pred             eEEehhhhhhHHHhCCc-------cccccCCcceeeccccccc-chHHHHHHHHHHHHcCCCCCCcccCCccceEEEEEE
Confidence            99999999999999988       99996 999999997 766 579999999999999999999999999999999998


Q ss_pred             ecCCCeEEEEEEEEEeecccchhhhHhhhhcccCCCCccccchhHHhhhcCCCCCCccccccceeeeecccccccccCcc
Q 019826          190 NKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRASTK  269 (335)
Q Consensus       190 ~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~~pnL~~~~dis~~~~~~~~~sese~e~~~~~v~~~~~~~~~~~~~~~  269 (335)
                        .|+.||||.|+|..                                         .                      
T Consensus       201 --~D~~IWfRnyqI~~-----------------------------------------~----------------------  215 (299)
T KOG2971|consen  201 --LDGKIWFRNYQISE-----------------------------------------E----------------------  215 (299)
T ss_pred             --ecCeEEEEEeEecc-----------------------------------------c----------------------
Confidence              78999999999963                                         0                      


Q ss_pred             cceeeEEecccceeeeeEeecccCccceeeEe--ccccch
Q 019826          270 SAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSE--YGTVGD  307 (335)
Q Consensus       270 ~~v~L~EIGPR~tLkL~kIeeG~~~G~vlyh~--~v~kt~  307 (335)
                      +.+.|+||||||+|.+++|.+|+|+|.+||.+  ||+.+-
T Consensus       216 ed~~L~EiGPRfvl~~ikif~gsFgG~~lYenp~yvspn~  255 (299)
T KOG2971|consen  216 EDKTLIEIGPRFVLNVIKIFEGSFGGPTLYENPKYVSPNM  255 (299)
T ss_pred             cCcceeeeccHHHHhHHHHHhccCCCceeecCccccCHHH
Confidence            12679999999999999999999999999974  887654

>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.3e-43  Score=312.37  Aligned_cols=208  Identities=26%  Similarity=0.409  Sum_probs=186.6

Q ss_pred             CCCcEEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEE-EeeCCCCcEEEEeCCCC
Q 019826           31 KIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML-SKTESAPYLRVARTPQG  109 (335)
Q Consensus        31 ~~Pk~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livf-s~~kk~~~L~I~rlP~G  109 (335)
                      ..-+++|+++++++-++||||+||..| .||+.+.-|+.-+..+.++.++|..++|+++++| ++.+.++|||+++.|+|
T Consensus        29 ~kq~~lilSsRGvsyr~RHL~~Dls~l-~phskke~KlD~kk~l~qLnelaelynCnn~lFFesrkr~Dlyl~~ar~pnG  107 (283)
T COG5154          29 PKQTSLILSSRGVSYRIRHLMKDLSRL-VPHSKKEQKLDMKKNLGQLNELAELYNCNNMLFFESRKRSDLYLMGARIPNG  107 (283)
T ss_pred             ccceEEEEecCCchHHHHHHHHHHHHh-CcccccccccchhhhHHHHHHHHHHhcCCceEEEeecccccceeeeccCCCC
Confidence            345789999999999999999999999 6999888888888889999999999999999999 66666799999999999


Q ss_pred             CeEEEEEecceehhhhhhhcCCCCCCCCCCC-CccEEEecC-CCCCchhhHHHHHHHHhcCCCCCCCcccCCCCCeEEEE
Q 019826          110 PTLTFKIHEYSLAVDVAQSQLRPRCPQDLFK-TSPLIVLSG-FGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLL  187 (335)
Q Consensus       110 PTl~F~I~ny~~~~di~~~~k~~~~~g~~~~-s~PlLIfng-F~t~~~~lkli~~lfq~mFp~~~v~~~~l~~~~rVilf  187 (335)
                      ||+.|+|+|.+||+|+..+       |++++ ++|.|.|+. |.+. |||+.++++|++.|..|+....+.++++||++|
T Consensus       108 ptvkF~~~NlhTMdelNft-------gN~lKgsrpvLsFdk~Fe~~-pHlk~~Kell~h~F~ip~~arrSkpfiD~v~~f  179 (283)
T COG5154         108 PTVKFRMHNLHTMDELNFT-------GNSLKGSRPVLSFDKEFEDI-PHLKYAKELLEHIFGIPKGARRSKPFIDKVLCF  179 (283)
T ss_pred             CeEEEEEeccchHhhcCCc-------cccccCCcceEeeccccccc-hHHHHHHHHHHHhccCCCcccccccchhheEEE
Confidence            9999999999999999987       99997 999999998 7775 799999999999999999888899999999999


Q ss_pred             eeecCCCeEEEEEEEEEeecccchhhhHhhhhcccCCCCccccchhHHhhhcCCCCCCccccccceeeeecccccccccC
Q 019826          188 NYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRAS  267 (335)
Q Consensus       188 ~~~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~~pnL~~~~dis~~~~~~~~~sese~e~~~~~v~~~~~~~~~~~~~  267 (335)
                      ++  .||+||+|.|.|..                                        |.||                  
T Consensus       180 ~i--~DgkIWvR~YeI~r----------------------------------------e~ed------------------  199 (283)
T COG5154         180 FI--LDGKIWVRCYEIGR----------------------------------------ENED------------------  199 (283)
T ss_pred             EE--ecCeEEEEEEeecc----------------------------------------cccc------------------
Confidence            87  79999999999953                                        1122                  


Q ss_pred             cccceeeEEecccceeeeeEeecccCccceeeEe--ccccch
Q 019826          268 TKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSE--YGTVGD  307 (335)
Q Consensus       268 ~~~~v~L~EIGPR~tLkL~kIeeG~~~G~vlyh~--~v~kt~  307 (335)
                      ....|+|+||||||+|.+++|.||+|+|.+||.+  ||+.|-
T Consensus       200 ~~~dv~L~EIGPRfVmtvi~iLEgsFgGp~iYkn~~~vs~~~  241 (283)
T COG5154         200 KSKDVKLEEIGPRFVMTVIKILEGSFGGPAIYKNETFVSSTM  241 (283)
T ss_pred             ccccceeeeeccHHHHHHHHHHHhccCCceeeecccccchHH
Confidence            1134899999999999999999999999999974  888775

>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins

Probab=100.00  E-value=9.4e-42  Score=305.74  Aligned_cols=157  Identities=34%  Similarity=0.585  Sum_probs=75.5

Q ss_pred             EEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEEEeeCCC-CcEEEEeCCCCCeEEEE
Q 019826           37 VFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTLTFK  115 (335)
Q Consensus        37 V~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~kk~-~~L~I~rlP~GPTl~F~  115 (335)
                      |+++++++..+++|++||+.+|.|| +..++.++.|.+++++++|..++|+|+++|+++++. ++|||+|+|+|||++|+
T Consensus         1 i~ts~~~s~~~~~l~~DL~~l~~p~-s~~~~r~~~~~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f~   79 (191)
T PF04427_consen    1 ITTSRKPSKRLRQLMKDLRSLFPPN-SKKLNRKKKNSLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEFS   79 (191)
T ss_dssp             -EESSS--HHHHHHHHHHHTTS-TT-EEE---TT---HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEEE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHcCCC-eEEEeCCCCCchHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEEE
Confidence            6889999999999999999997355 667876676799999999999999999999888875 99999999999999999


Q ss_pred             EecceehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCc-hhhHHHHHHHHhcCCCCCCCcccCCCCCeEEEEeeecCCC
Q 019826          116 IHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGD-QHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTK  194 (335)
Q Consensus       116 I~ny~~~~di~~~~k~~~~~g~~~~s~PlLIfngF~t~~-~~lkli~~lfq~mFp~~~v~~~~l~~~~rVilf~~~~~~d  194 (335)
                      |++|++++|+..+.+++      .+++|+|||+||.+.. ++++++++||++|||++.++++.+.+++|||+|++  ++|
T Consensus        80 I~~~~~~~~~~~~~~~~------~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~--~~d  151 (191)
T PF04427_consen   80 IENYKLMKDIKSSSKRP------KGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSN--QRD  151 (191)
T ss_dssp             EEEEE-HHHHT-------------S---EEEEE-----------------------------------------------
T ss_pred             EEeEEEhhHhcccccCC------CCCCeEEEEEeccccccccccccccccccccccccccccccccccccccccc--ccc
Confidence            99999999999763322      2578999999987753 78999999999999999999999999999999987  566


Q ss_pred             e-EEEEEEEE
Q 019826          195 L-IDFRHYSI  203 (335)
Q Consensus       195 ~-I~fRhY~I  203 (335)
                      . |||||| |
T Consensus       152 ~~I~fR~Y-i  160 (191)
T PF04427_consen  152 FVIFFRHY-I  160 (191)
T ss_dssp             ----------
T ss_pred             cccccccc-c
Confidence            6 999999 7

There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.

>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]

Probab=100.00  E-value=2e-36  Score=279.48  Aligned_cols=196  Identities=21%  Similarity=0.345  Sum_probs=169.5

Q ss_pred             CCCcEEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEEEeeCCC-CcEEEEeCCCC
Q 019826           31 KIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQG  109 (335)
Q Consensus        31 ~~Pk~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~kk~-~~L~I~rlP~G  109 (335)
                      ..||+||++...+......|+.+|+.+ +||+....  +++..++.++++|..+++|+++++++.++. +.|.|+++|+|
T Consensus        95 ~spKvlITt~~~~~~~t~~~~~eL~~i-iPNs~~~~--R~~~~vk~i~~~a~~~eftdlvvV~edRkk~n~L~iihlP~G  171 (302)
T KOG2780|consen   95 FSPKVLITTSKNPKRTTYKFASELLDI-IPNSTVKK--RDNYTVKSIVEIAIKREFTDLVVVNEDRKKPNGLKIIHLPNG  171 (302)
T ss_pred             cCccEEEEcCCCCcccHHHHHHHHHHh-CCCceEEe--cCCchHHHHHHHHHHhcCCceEEEecCcCCccceEEEecCCC
Confidence            348999999999899999999999999 89987544  457889999999999999999999877766 99999999999


Q ss_pred             CeEEEEEecceehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCchhhHHHHHHHHhcCCCCCCCcccCCCCCeEEEEee
Q 019826          110 PTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNY  189 (335)
Q Consensus       110 PTl~F~I~ny~~~~di~~~~k~~~~~g~~~~s~PlLIfngF~t~~~~lkli~~lfq~mFp~~~v~~~~l~~~~rVilf~~  189 (335)
                      ||++|.+.+|.+.+||...       |....|.|.||+|||+++++  ..|++||++|||..+    .+ ..+||++||+
T Consensus       172 PT~~Fkls~~~~~kdi~k~-------g~~t~h~PElIlNNFtTrlG--~~v~r~f~sLfp~~p----~f-~gRrvvtFhn  237 (302)
T KOG2780|consen  172 PTAYFKLSNVVLTKDIKKH-------GRPTSHIPELILNNFTTRLG--MTVGRLFASLFPHDP----QF-TGRRVVTFHN  237 (302)
T ss_pred             CceEEEeecccchhhhhhc-------CCcccccchhhhhcccchhh--HHHHHHHHHhCCCCc----cc-cceeEEEEEe
Confidence            9999999999999999987       77788999999999999874  599999999999544    23 5899999887


Q ss_pred             ecCCCeEEEEEEEEEeecccchhhhHhhhhcccCCCCccccchhHHhhhcCCCCCCccccccceeeeecccccccccCcc
Q 019826          190 NKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRASTK  269 (335)
Q Consensus       190 ~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~~pnL~~~~dis~~~~~~~~~sese~e~~~~~v~~~~~~~~~~~~~~~  269 (335)
                        ++|.|+||||+|.++..                                                            .
T Consensus       238 --QrD~IfFRhhRY~Fkee------------------------------------------------------------~  255 (302)
T KOG2780|consen  238 --QRDYIFFRHHRYEFKEE------------------------------------------------------------E  255 (302)
T ss_pred             --cCceEEEEEEEEeeccc------------------------------------------------------------c
Confidence              89999999999987421                                                            1


Q ss_pred             cceeeEEecccceeeeeEeecccCccceeeEecccc
Q 019826          270 SAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGTV  305 (335)
Q Consensus       270 ~~v~L~EIGPR~tLkL~kIeeG~~~G~vlyh~~v~k  305 (335)
                      ..+.|+||||||||+|.++++|.|+-...-+.|+.+
T Consensus       256 ~kvglqElGPrfTLrL~~lq~G~fd~K~ge~~~~~~  291 (302)
T KOG2780|consen  256 IKVGLQELGPRFTLRLRRLQKGTFDEKEGEFEWVHK  291 (302)
T ss_pred             cccchhhcCCceeeeehhhhhccccccceeeeeeec
Confidence            358899999999999999999999844444455544

>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]

Probab=100.00  E-value=1.1e-35  Score=271.58  Aligned_cols=200  Identities=22%  Similarity=0.410  Sum_probs=174.6

Q ss_pred             CCCCCCcEEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEEEeeCCC-CcEEEEeC
Q 019826           28 TGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVART  106 (335)
Q Consensus        28 ~~~~~Pk~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~kk~-~~L~I~rl  106 (335)
                      +.+.+||+||++++.+|.++.+|+++|+-| +||+ .++. +....+..+++.|..+|+|+++++++.++. .+|.|+++
T Consensus        78 ag~~dPKimvTTSR~PSsrL~~FaKelkLv-fPNa-qr~n-RG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL~vshl  154 (290)
T KOG2781|consen   78 AGEEDPKIMVTTSRDPSSRLKMFAKELKLV-FPNA-QRLN-RGNYVVGELVDAARANGVTDLIIVHEHRGIPDGLVVSHL  154 (290)
T ss_pred             ccCCCCcEEEEeCCCchHHHHHHHHhheEe-ccCh-hhhc-ccceeHHHHHHHHHHCCCceEEEEeccCCCCCceEEEec
Confidence            345679999999999999999999999977 7995 5675 556889999999999999999999999998 99999999


Q ss_pred             CCCCeEEEEEecceehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCchhhHHHHHHHHhcCCCCCCCcccCCCCCeEEE
Q 019826          107 PQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVL  186 (335)
Q Consensus       107 P~GPTl~F~I~ny~~~~di~~~~k~~~~~g~~~~s~PlLIfngF~t~~~~lkli~~lfq~mFp~~~v~~~~l~~~~rVil  186 (335)
                      |.|||+.|.|.|+.+.+||...       |.....+|.||||||++..  +++++.+|.++||.|..      ..+|||+
T Consensus       155 PfGPTa~Fsl~nvVmRhdip~~-------G~msE~~phlIfdNf~t~l--G~Rv~~iLkhLFP~pk~------ds~Rvvt  219 (290)
T KOG2781|consen  155 PFGPTAFFSLHNVVMRHDIPDI-------GTMSEQKPHLIFDNFTTKL--GKRVKTILKHLFPVPKD------DSKRVVT  219 (290)
T ss_pred             CCCCceEeeeeeeeeccccccc-------ccccccCceEEeccccchH--HHHHHHHHHHhCCCCcC------CcccEEE
Confidence            9999999999999999999986       7777789999999999976  58999999999996653      6899998


Q ss_pred             EeeecCCCeEEEEEEEEEeecccchhhhHhhhhcccCCCCccccchhHHhhhcCCCCCCccccccceeeeeccccccccc
Q 019826          187 LNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRA  266 (335)
Q Consensus       187 f~~~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~~pnL~~~~dis~~~~~~~~~sese~e~~~~~v~~~~~~~~~~~~  266 (335)
                      |.+  .+|.|.||||.|...                                                            
T Consensus       220 f~N--~~DyIsFRhhvy~~~------------------------------------------------------------  237 (290)
T KOG2781|consen  220 FAN--RNDYISFRHHVYKKT------------------------------------------------------------  237 (290)
T ss_pred             Eec--CCceEEEEEEEEecC------------------------------------------------------------
Confidence            754  899999999999641                                                            


Q ss_pred             CcccceeeEEecccceeeeeEeecccCc---cceee--Eeccccchh
Q 019826          267 STKSAVKLQEIGPRMTLQLIKVEEGLCS---GSIIF--SEYGTVGDK  308 (335)
Q Consensus       267 ~~~~~v~L~EIGPR~tLkL~kIeeG~~~---G~vly--h~~v~kt~~  308 (335)
                       ....|.|.|+||||.|+|+.|--|+++   +++.|  +.|+....+
T Consensus       238 -~~k~vel~evGPRfelklyeIrlGTlE~~~ad~EW~~rpY~nTa~k  283 (290)
T KOG2781|consen  238 -DGKEVELTEVGPRFELKLYEIRLGTLEIKDADVEWVLRPYMNTARK  283 (290)
T ss_pred             -CCceEEEeeccccceeeeeeeeecceeccccceeEEecchhcchhh
Confidence             013588999999999999999999985   77777  588875443

>smart00879 Brix Brix domain

Probab=100.00  E-value=2.5e-33  Score=247.70  Aligned_cols=159  Identities=29%  Similarity=0.456  Sum_probs=132.2

Q ss_pred             EEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccC-CCcEEEEEEee-CCC-CcEEEEeCCCCCeE
Q 019826           36 FVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPM-GVTHFLMLSKT-ESA-PYLRVARTPQGPTL  112 (335)
Q Consensus        36 lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~-~~t~livfs~~-kk~-~~L~I~rlP~GPTl  112 (335)
                      ||+++++++..+++|++||+.++.|+++. .  ++++.+.++.+.|... +|++++++..+ ++. .+|||+++|+|||+
T Consensus         1 lit~sr~~s~~~r~~~~dL~~~~~~~~~~-~--r~~~~~~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l   77 (180)
T smart00879        1 LITTSRKPSKRTRQLAKDLRRLFPPSTKI-N--RGKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTL   77 (180)
T ss_pred             CEEcCCCCCHHHHHHHHHHHHHCCCcEee-c--ccCccHHHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcE
Confidence            58899999999999999999996455433 2  4556677777776665 77788888554 554 89999999999999


Q ss_pred             EEEEecceehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCchhhHHHHHHHHhcCCCCCCCcccCCCCCeEEEEeeecC
Q 019826          113 TFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKD  192 (335)
Q Consensus       113 ~F~I~ny~~~~di~~~~k~~~~~g~~~~s~PlLIfngF~t~~~~lkli~~lfq~mFp~~~v~~~~l~~~~rVilf~~~~~  192 (335)
                      .|.|.++++++|+...+..    ....+++|+|||+||++..  .+++++||++|||.+++.++++++++|||+|++  +
T Consensus        78 ~f~i~~v~~~~~~~~~~~~----~~~~~~~P~li~~~~~~~~--~~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~--~  149 (180)
T smart00879       78 DFKILNVSLRKELKGFKTG----NCLTGSRPLLIFNNFFTEL--GKLIKELFQDLFPGPPEHKKSLPGLRRVVTFSN--Q  149 (180)
T ss_pred             EEEEECcccHhhhhhhhcC----CCcCCCccEEEECCCCCch--HHHHHHHHHHHCCCCCccccccCCCCEEEEEEe--c
Confidence            9999999999999875332    2234589999999998875  389999999999999999999999999999987  5


Q ss_pred             CCeEEEEEEEEEe
Q 019826          193 TKLIDFRHYSIRL  205 (335)
Q Consensus       193 ~d~I~fRhY~I~~  205 (335)
                      +|.||||||.|..
T Consensus       150 ~~~I~~R~y~i~~  162 (180)
T smart00879      150 DDYIFFRHYRIKF  162 (180)
T ss_pred             CCEEEEEEEEEEc
Confidence            6899999999974

The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.

>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=3.2e-26  Score=213.16  Aligned_cols=183  Identities=17%  Similarity=0.278  Sum_probs=158.8

Q ss_pred             hhhhccCCCCCCCCCCCCCcEEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHh------hcccCCCcE
Q 019826           15 SFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLN------VAGPMGVTH   88 (335)
Q Consensus        15 ~~~k~~~~~~~~~~~~~~Pk~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~------~a~~~~~t~   88 (335)
                      ++.|++...++|+..++....+.+.+..++..+.+.|.|++.+..|.+. .  ..++|++.+|.+      ++.+++|+-
T Consensus        10 ~~~kr~l~kr~~klve~~k~alf~~g~~~~~tl~~vm~dl~alKKp~~i-~--~~rkN~i~pFEd~ssleffseK~D~sl   86 (307)
T KOG3031|consen   10 ARAKRALVKREPKLVENHKDALFLPGMKTNKTLLDVMKDLYALKKPLEI-R--YNRKNNIHPFEDPSSLEFFSEKNDCSL   86 (307)
T ss_pred             hhhHHHHHhhchhhchhhhhhhccCchhhchHHHHHHHHHHHhccCcee-e--eccCCCcccCCCCchHHHHhhhhhhhh
Confidence            4556778888999999999999999999999999999999999999965 3  457789998855      588999966


Q ss_pred             EEEEEeeCCC-CcEEEEeCCCCCe---EEEEEecceehhhhhhhcCCCCCCCCCCCCccEEEecC--CCCCchhhHHHHH
Q 019826           89 FLMLSKTESA-PYLRVARTPQGPT---LTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSG--FGTGDQHLKLTTI  162 (335)
Q Consensus        89 livfs~~kk~-~~L~I~rlP~GPT---l~F~I~ny~~~~di~~~~k~~~~~g~~~~s~PlLIfng--F~t~~~~lkli~~  162 (335)
                      +++.++++++ ++|+|||++++..   ++|+|.||.+++|+..+       +...+++|+|+|+|  |.+. +.++++++
T Consensus        87 fv~gs~sKKrp~nLv~gR~fd~~vlDMiElgI~~ykslsdF~~~-------k~~~gtKP~l~f~G~~f~~~-~~~krlkn  158 (307)
T KOG3031|consen   87 FVLGSHSKKRPNNLVIGRTFDYEVLDMIELGIENYKSLSDFKAA-------KITEGTKPMLIFQGAVFDQH-PEYKRLKN  158 (307)
T ss_pred             hhhccccccCCCceEEEEecCchhhHHHHHhhhhhhhhhhhhcc-------CCCCCCCceEEEecchhccC-hHHHHHHH
Confidence            6666999998 9999999999998   59999999999999987       44457999999999  6665 57999999


Q ss_pred             HHHhcCCCCCCCcccCCCCCeEEEEeeecCCCeEEEEEEEEEeeccc
Q 019826          163 MFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVG  209 (335)
Q Consensus       163 lfq~mFp~~~v~~~~l~~~~rVilf~~~~~~d~I~fRhY~I~~~~~g  209 (335)
                      +|.++|..+.++++.|.++++|+.|+.. ++..|+||||.+.++++|
T Consensus       159 L~vDfFrge~vd~v~l~Gl~~v~vfta~-~~~~v~~r~Y~lklkKs~  204 (307)
T KOG3031|consen  159 LFVDFFRGEKVDKVRLAGLEYVIVFTAT-EETNVLFRVYRLKLKKSG  204 (307)
T ss_pred             HHHHHHcCCcccceeeccccEEEEEEee-cCceeeeeeeeeeeeecc
Confidence            9999999999999999999999988763 344599999999987654

>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]

Probab=99.80  E-value=2.2e-18  Score=155.70  Aligned_cols=181  Identities=19%  Similarity=0.313  Sum_probs=151.4

Q ss_pred             CCcEEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEEEeeCCC-CcEEEEeC-CCC
Q 019826           32 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVART-PQG  109 (335)
Q Consensus        32 ~Pk~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~kk~-~~L~I~rl-P~G  109 (335)
                      .|+.|||++.++|.++++|++||..+ +|++....  +.+.++.++...|...|.++++++++.++. ..|.+.++ |.|
T Consensus         1 ~~~~liTTSRkPS~Rtr~Fak~L~~~-lp~~~~~~--rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~   77 (191)
T COG2136           1 MPKMLLTTSRKPSRRTRSFAKDLSRV-LPNAYFLR--RGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEG   77 (191)
T ss_pred             CCcEEEEecCCccHHHHHHHHHHHHh-CCcceEEe--cCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCC
Confidence            48999999999999999999999999 79987543  345789999999999999999999999988 89999999 999


Q ss_pred             CeEEEEEecceehhhhhhhcCCCCCCCC-CCCCccEEEecCCCCCchhhHHHHHHHHhc----CCCCCCCcccCCCCCeE
Q 019826          110 PTLTFKIHEYSLAVDVAQSQLRPRCPQD-LFKTSPLIVLSGFGTGDQHLKLTTIMFQNI----FPAIDINTVKLSTCQRI  184 (335)
Q Consensus       110 PTl~F~I~ny~~~~di~~~~k~~~~~g~-~~~s~PlLIfngF~t~~~~lkli~~lfq~m----Fp~~~v~~~~l~~~~rV  184 (335)
                      |++.|.+.++++.+++...       +. .-.+-|++|+++|.+... .+.+.++|+.+    |+.-.    .+ ....|
T Consensus        78 ~~~~f~l~~v~l~re~~~~-------~~~~~~~~~~~I~~~~~~~~g-~~~~~~~~~~~~~~~f~~~~----~~-~~~~v  144 (191)
T COG2136          78 LTFSFKLSGVKLRREIPVL-------GPKSRLHGPELIFNNFTTLLG-FLKVAEAFSELLLVKFVPNP----AW-EHELV  144 (191)
T ss_pred             ceEEEEEecceEEEecccc-------CCcccCCCCceeeeccccccc-chhhHHHHHhhcccccccCc----cc-ceeee
Confidence            9999999999999999886       33 334889999999999864 47888999999    76332    22 35667


Q ss_pred             EEEeeecCCCeEEEEEEEEEeecccchhhhHhhhhcccCCCCccccchhHHhhhcCCCCCCccccccceeeeeccccccc
Q 019826          185 VLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVN  264 (335)
Q Consensus       185 ilf~~~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~~pnL~~~~dis~~~~~~~~~sese~e~~~~~v~~~~~~~~~~  264 (335)
                      +.+++  +++.+.||+|......                                                         
T Consensus       145 ~~~~~--~~~f~~~~~~~~~~~~---------------------------------------------------------  165 (191)
T COG2136         145 ATGAN--KGDFKSLRRHRRVFEE---------------------------------------------------------  165 (191)
T ss_pred             eeccc--cceEEEEEeeeeEeee---------------------------------------------------------
Confidence            76554  7899999988765410                                                         


Q ss_pred             ccCcccceeeEEecccceeeeeEeeccc
Q 019826          265 RASTKSAVKLQEIGPRMTLQLIKVEEGL  292 (335)
Q Consensus       265 ~~~~~~~v~L~EIGPR~tLkL~kIeeG~  292 (335)
                           ..+.+.|+||||+|+|-.++.|.
T Consensus       166 -----~~~~~~~vgp~~~~r~~~~~~g~  188 (191)
T COG2136         166 -----DGIGLEEVGPRLTLRLWRMEDGR  188 (191)
T ss_pred             -----eeeeEEEeCceeeeehhhhhhcc
Confidence                 24789999999999999999983

>PRK03972 ribosomal biogenesis protein; Validated

Probab=99.65  E-value=1.5e-15  Score=138.33  Aligned_cols=125  Identities=14%  Similarity=0.262  Sum_probs=104.0

Q ss_pred             EEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEEEeeCCC-CcEEEEeCCCC---C
Q 019826           35 SFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQG---P  110 (335)
Q Consensus        35 ~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~kk~-~~L~I~rlP~G---P  110 (335)
                      +|||++.++|.++++|++||..+ +||+.. + .|++..++++++.|...|+|+++++++.++. +.|.|++||+|   |
T Consensus         2 iLITTSr~PS~rtr~F~keL~~v-~Pns~~-i-~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GP   78 (208)
T PRK03972          2 MLITTSHRPTRRTRSFGHDLERV-FPNSLY-L-TRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGY   78 (208)
T ss_pred             EEEECCCCccHHHHHHHHHHHHh-CCCCEE-E-ecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCc
Confidence            68999999999999999999999 799753 3 3667899999999999999999999999888 99999999855   5


Q ss_pred             eEEEEEecceehhhhh--hhcCCCCCCCCCCCCccEEEecCCCCCchhhHHHHHHHHhcCCC
Q 019826          111 TLTFKIHEYSLAVDVA--QSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPA  170 (335)
Q Consensus       111 Tl~F~I~ny~~~~di~--~~~k~~~~~g~~~~s~PlLIfngF~t~~~~lkli~~lfq~mFp~  170 (335)
                      |++|+|.|+.+.+||.  ..       +....+.|++|.++|.+...+....+. +-..+..
T Consensus        79 Ta~FkLsnV~l~~ei~~~~~-------~~~s~~~p~iItts~kt~~g~~~~Ak~-lA~eLgi  132 (208)
T PRK03972         79 LGYLYLHGIKLQREMGFRNL-------RPIREDMPLVITTAKRVGLDHMAFAQV-FAELTGG  132 (208)
T ss_pred             eEEEEEccEEEHHHcccCCC-------CCccccccEEEEcCCCCCHHHHHHHHH-HHHHhCC
Confidence            9999999999999994  34       556679999999999998655444333 3444433

>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=2.4e-15  Score=138.17  Aligned_cols=177  Identities=14%  Similarity=0.202  Sum_probs=144.7

Q ss_pred             hhccCCCCCCCCCCCCCcEEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHh------hcccCCCcEEE
Q 019826           17 VKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLN------VAGPMGVTHFL   90 (335)
Q Consensus        17 ~k~~~~~~~~~~~~~~Pk~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~------~a~~~~~t~li   90 (335)
                      .||++..|+|+..+....++++.+-.+++.+-..+-|+..+..|... .  .-++|+|.+|.+      ++.+++|.-..
T Consensus        12 ~kRAl~kRepklve~~k~AiF~pg~s~~k~lldvi~d~~alkkp~~i-~--f~rkn~ihpfEd~SplEffseknd~~l~v   88 (316)
T COG5106          12 VKRALHKREPKLVEAHKDAIFYPGMSERKTLLDVICDTEALKKPKEI-G--FIRKNTIHPFEDTSPLEFFSEKNDKKLSV   88 (316)
T ss_pred             HHHHHHhcCchhhhhhhheEeccCcccchhhhhhhcchhhhccchhh-c--cccCCcccccccCCHHHHHHHhhhhhhhh
Confidence            45889999999999999999999889899999999999999999854 3  356788887755      57889998888


Q ss_pred             EEEeeCCC-CcEEEEeCCCCCe---EEEEEecceehhhhhhhcCCCCCCCCCCCCccEEEecC--CCCCchhhHHHHHHH
Q 019826           91 MLSKTESA-PYLRVARTPQGPT---LTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSG--FGTGDQHLKLTTIMF  164 (335)
Q Consensus        91 vfs~~kk~-~~L~I~rlP~GPT---l~F~I~ny~~~~di~~~~k~~~~~g~~~~s~PlLIfng--F~t~~~~lkli~~lf  164 (335)
                      +|++.+++ ++|.|+|..+.-.   ++|.|.+|.+..|+..+       |...+.+|.++|.|  |.+ .|.+++|+++|
T Consensus        89 l~ts~kKr~hnlt~~R~Fny~~~DMiEl~i~~yksvsdF~~~-------~~~~g~Kpmv~fQg~~fd~-hp~yr~iksLf  160 (316)
T COG5106          89 LFTSVKKRRHNLTIGRAFNYELIDMIELKINRYKSVSDFECA-------GPELGMKPMVVFQGINFDA-HPTYRRIKSLF  160 (316)
T ss_pred             hhhhccccccceeEEeecchHHHHHHHHhhhhhhehhhhhcc-------CCccCCceEEEEecccccc-chHHHHHHHHH
Confidence            88777776 9999999999877   69999999999999876       67778999999998  665 46799999999


Q ss_pred             HhcCCCCCCCcccCCCCCeEEEEeeec--CCC----eEEEEEEEEE
Q 019826          165 QNIFPAIDINTVKLSTCQRIVLLNYNK--DTK----LIDFRHYSIR  204 (335)
Q Consensus       165 q~mFp~~~v~~~~l~~~~rVilf~~~~--~~d----~I~fRhY~I~  204 (335)
                      -++|.....+.....+..+||..+-..  ++.    .+.||.|...
T Consensus       161 lDFFrges~~~ldsagls~Vi~~t~~g~~~d~~plp~v~fRVyk~k  206 (316)
T COG5106         161 LDFFRGESSKVLDSAGLSWVIARTEEGYVLDTYPLPLVVFRVYKTK  206 (316)
T ss_pred             HHHHcCCchhhhhhcceeEEEEEecchhhhccccccceeeeeeecc
Confidence            999998776655556788888755311  121    2578998765

>PRK00933 ribosomal biogenesis protein; Validated

Probab=94.80  E-value=0.18  Score=44.96  Aligned_cols=74  Identities=14%  Similarity=0.275  Sum_probs=58.6

Q ss_pred             EEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEEEeeCCC-CcEEEEeCCCCCeEEE
Q 019826           36 FVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTLTF  114 (335)
Q Consensus        36 lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~kk~-~~L~I~rlP~GPTl~F  114 (335)
                      +||++.+++..+++++++|...+  ++.  +-.|++.+++++...|..   .+++++++.++. ..|.|...-..+.+.+
T Consensus         2 IITTSrkPs~~t~~fAkeLa~~l--n~~--yv~Rgk~Sl~eL~~~~~~---~~llVV~E~kg~P~~L~iyd~~~~~~~~~   74 (165)
T PRK00933          2 IITTSRKPSQRTRSLVKDLARFL--NCK--YVNRGKMSLQELLEECEA---RYLLIIGEYKGNPGALKFYDVEGNKLLSY   74 (165)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHh--CCE--EEccCCccHHHHHHHhcc---CcEEEEECCCCCCceEEEEECCCCEEEEE
Confidence            78999999999999999999984  653  334777899998766543   488999888877 8999999877777665


Q ss_pred             EE
Q 019826          115 KI  116 (335)
Q Consensus       115 ~I  116 (335)
                      .|
T Consensus        75 ~~   76 (165)
T PRK00933         75 RL   76 (165)
T ss_pred             EE
Confidence            55

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	335
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 1e-09
 Identities = 56/395 (14%), Positives = 111/395 (28%), Gaps = 125/395 (31%)

Query: 12  FVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKR 71
             KS + K++  +DHI                   +        +L        L  K+ 
Sbjct: 41  MPKSILSKEE--IDHII-------------MSKDAVSGT----LRLFW-----TLLSKQE 76

Query: 72  NNLKDFLNVAGPMGVTH-FLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQL 130
             ++ F  V   + + + FLM           +    + P++  +++          +Q+
Sbjct: 77  EMVQKF--VEEVLRINYKFLMS---------PIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 131 -------RPRCPQDL------FKTSPLIVLSG-FGTGDQHL--------KLTTIMFQNIF 168
                  R +    L       + +  +++ G  G+G   +        K+   M   IF
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 169 PAIDINTVKLSTCQRIVL-------LNYNKDTKLID--FRHYSIRLQPVGVSRRLRKFVQ 219
                  + L  C            L Y  D           +I+L+   +   LR+ ++
Sbjct: 186 ------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 220 SHQVPD-LRSLQDVSD------F-------VTKAGYGSESEADDEAATVTLVSDLGRVNR 265
           S    + L  L +V +      F       +T      +   D  +A  T    L   + 
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR---FKQVTDFLSAATTTHISLDHHSM 296

Query: 266 ASTKSA----------VKLQEIGPR-------MTLQLI--KVEEGLCSGSIIFSEYGTVG 306
             T              + Q++ PR         L +I   + +GL      +  +  V 
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDL-PREVLTTNPRRLSIIAESIRDGLA----TWDNWKHVN 351

Query: 307 DKKKQKGSKQ--ENQEDDEESE---------EDVK 330
             K     +      E  E  +             
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	335
2cxh_A	217	Probable BRIX-domain ribosomal biogenesis protein;	99.87
1w94_A	156	MIL, probable BRIX-domain ribosomal biogenesis pro	98.91

>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2

Probab=99.87  E-value=9.9e-22  Score=179.62  Aligned_cols=132  Identities=14%  Similarity=0.120  Sum_probs=117.1

Q ss_pred             CCCCCcEEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEEEeeCCC-CcEEEEeCC
Q 019826           29 GDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTP  107 (335)
Q Consensus        29 ~~~~Pk~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~kk~-~~L~I~rlP  107 (335)
                      ....||+|||++++++.++++|++||..+ +||+.. +. |++..|+++++.|..++||+++++.+.++. .+|||+++|
T Consensus        30 ~~~~pKvLITTSr~pS~r~r~fakeL~~~-lPns~~-i~-Rgk~sLkeL~e~a~~~~~tdlivV~e~rg~p~~L~~~hlP  106 (217)
T 2cxh_A           30 GVGGYRILVTTSRRPSPRIRSFVKDLSAT-IPGAFR-FT-RGHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYAVE  106 (217)
T ss_dssp             ---CCEEEEEESSSCCHHHHHHHHHHHTT-STTEEE-CC-CTTCCHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEECC
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHHHHH-CCCCEE-ee-cCCcCHHHHHHHHHhCCCCEEEEEEecCCCCcEEEEEECC
Confidence            34689999999999999999999999999 699753 43 567899999999999999999999888877 999999999


Q ss_pred             CC---C-eEEEEEecceehhhhhhhcCCCCCCCCCC-CCccEEEecCCCCCchhhHHHHHHHHhcCCCCCC
Q 019826          108 QG---P-TLTFKIHEYSLAVDVAQSQLRPRCPQDLF-KTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDI  173 (335)
Q Consensus       108 ~G---P-Tl~F~I~ny~~~~di~~~~k~~~~~g~~~-~s~PlLIfngF~t~~~~lkli~~lfq~mFp~~~v  173 (335)
                      +|   | |++|+|.|+.+++|+...       |+++ .++|+|+ ++|++.  +++++++||++|||.|..
T Consensus       107 ~G~~~P~Ta~F~I~nv~l~~ei~~~-------g~~~~~~rP~L~-~nF~t~--~g~~i~~~f~~lFp~P~~  167 (217)
T 2cxh_A          107 GPERPDNIVSFIVKGVSLSRERRWG-------LPSLRGGEVLVA-RPLDSG--VAVEFADAFVIAFHARLK  167 (217)
T ss_dssp             SSSCCEEEEEEEEEEEECHHHHTCC-------CCCCCSCCEEEE-EESSSS--THHHHHHHHHHHHCCBSS
T ss_pred             CCCCCCcEEEEEEeeEEehhhhccC-------CCccCCCCceEE-eeecCc--hHHHHHHHHHHHcCCCCC
Confidence            99   9 999999999999999987       6665 4899999 999986  578999999999998765

>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2

Probab=98.91  E-value=5.9e-09  Score=90.56  Aligned_cols=85  Identities=13%  Similarity=0.136  Sum_probs=71.9

Q ss_pred             cEEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEEEeeCCC-CcEEEEeCCCCCeE
Q 019826           34 KSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTL  112 (335)
Q Consensus        34 k~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~kk~-~~L~I~rlP~GPTl  112 (335)
                      |.+||++.+++..+.+++++|..++  ++. .+ .|++.+++++++.|...    ++++++.++. ..|.|.++|.|||+
T Consensus         1 kilITTSr~Ps~~l~~fakeLa~~l--n~~-~v-~Rgk~sl~~L~~~~~~~----~iVV~e~rg~P~~l~i~hlp~gpt~   72 (156)
T 1w94_A            1 HMLLTTSRKPSQRTRSFSQRLSRIM--GWR-YI-NRGKMSLRDVLIEARGP----VAVVSERHGNPARITFLDERGGERG   72 (156)
T ss_dssp             CCEEEECSSCCHHHHHHHHHHHHHH--TCE-EC-CCTTCCHHHHHHHHSSC----EEEEEEETTEEEEEEEECTTSCEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHh--CCE-EE-eeCCcCHHHHHHhcCCC----EEEEEcCCCCCCeEEEEeCCCCCEE
Confidence            5689999999999999999999984  654 33 36678999999887543    7777777776 89999999999999


Q ss_pred             EEEEecceehhhhhh
Q 019826          113 TFKIHEYSLAVDVAQ  127 (335)
Q Consensus       113 ~F~I~ny~~~~di~~  127 (335)
                      +|++ |+.+.+|+..
T Consensus        73 ~f~~-nv~l~~~~~~   86 (156)
T 1w94_A           73 YILF-NPSFEMKKPE   86 (156)
T ss_dssp             EEEE-EEEECSSCCC
T ss_pred             EEEE-ceEEcccCcc
Confidence            9998 9999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	335
d2cxha1	180	c.51.1.2 (A:13-192) Probable ribosomal biogenesis	9e-19

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 180

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 80.3 bits (198), Expect = 9e-19
 Identities = 24/179 (13%), Positives = 53/179 (29%), Gaps = 23/179 (12%)

Query: 47  LRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVART 106
           +R    DL   +          +   ++++    A   G    +++ +    P +     
Sbjct: 16  IRSFVKDLSATIPGAFRFT---RGHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYA 72

Query: 107 PQGP-----TLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTT 161
            +GP      ++F +   SL+ +           +         + SG            
Sbjct: 73  VEGPERPDNIVSFIVKGVSLSRERRWGL---PSLRGGEVLVARPLDSGVAV---EFADAF 126

Query: 162 I-MFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQ 219
           +  F            + +     V+ + +  T  + FR+      PVG   RL K  +
Sbjct: 127 VIAFHARLKP-----PEAAGYVEAVIESLDARTVAVTFRYGGA---PVGPMLRLGKPAE 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	335
d2cxha1	180	Probable ribosomal biogenesis protein {Archaeon Ae	99.94
d1w94a1	154	Probable ribosomal biogenesis protein {Methanobact	99.74

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.94  E-value=4.6e-28  Score=213.85  Aligned_cols=160  Identities=13%  Similarity=0.097  Sum_probs=138.2

Q ss_pred             cEEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEEEeeCCCCcEEEEeCCCCC---
Q 019826           34 KSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGP---  110 (335)
Q Consensus        34 k~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~kk~~~L~I~rlP~GP---  110 (335)
                      |+|||++.+++..+++|++||+.+ +||+..  ..+++++++|++++|..+||||+++|+++++..+|+++++|+||   
T Consensus         3 kvLITTSr~ps~~~r~f~kdL~~v-~Pns~~--~~R~k~~lk~i~~~a~~~~~t~liiv~e~~~~p~l~i~~lP~GP~~~   79 (180)
T d2cxha1           3 RILVTTSRRPSPRIRSFVKDLSAT-IPGAFR--FTRGHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYAVEGPERP   79 (180)
T ss_dssp             EEEEEESSSCCHHHHHHHHHHHTT-STTEEE--CCCTTCCHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEECCSSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh-CCCCEE--eecCCCcHHHHHHHHHHCCCCeEEEEEccCCCCcEEEEECCCCCCCc
Confidence            789999999999999999999999 599764  34678999999999999999999999999888899999999999   


Q ss_pred             --eEEEEEecceehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCchhhHHHHHHHHhcCCCCCCCcccCCCCCeEEEEe
Q 019826          111 --TLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLN  188 (335)
Q Consensus       111 --Tl~F~I~ny~~~~di~~~~k~~~~~g~~~~s~PlLIfngF~t~~~~lkli~~lfq~mFp~~~v~~~~l~~~~rVilf~  188 (335)
                        |++|+|.|+++.+|+.....   ..|....+.|.+|||||.+.+  ..++.++|+.+||++..      ..++|++|+
T Consensus        80 ~~t~~F~l~nv~l~~e~~~~~~---~~~~~t~~~p~lilnnf~t~L--g~~~~~~f~~lf~~p~~------~~~~vvt~~  148 (180)
T d2cxha1          80 DNIVSFIVKGVSLSRERRWGLP---SLRGGEVLVARPLDSGVAVEF--ADAFVIAFHARLKPPEA------AGYVEAVIE  148 (180)
T ss_dssp             EEEEEEEEEEEECHHHHTCCCC---CCCSCCEEEEEESSSSTHHHH--HHHHHHHHCCBSSCCSS------SCEEEEEEE
T ss_pred             cceEEEEEEEEEEehhhccccC---CCCCCccccchhHhcccchHH--HHHHHHHHHhhCCCchh------cCcEEEEEE
Confidence              99999999999999976422   235556689999999999976  45999999999987553      367899888


Q ss_pred             eecCCCeEEEEEEEEEeeccc
Q 019826          189 YNKDTKLIDFRHYSIRLQPVG  209 (335)
Q Consensus       189 ~~~~~d~I~fRhY~I~~~~~g  209 (335)
                      .  ++|.|++|+|.....+.|
T Consensus       149 n--~~d~if~~~~~~~~~~~G  167 (180)
T d2cxha1         149 S--LDARTVAVTFRYGGAPVG  167 (180)
T ss_dssp             E--EETTEEEEEEECSSSEEE
T ss_pred             e--cCCeEEEEEEecCCCCCC
Confidence            6  788999999987665555

>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.74  E-value=7.5e-19  Score=150.30  Aligned_cols=133  Identities=11%  Similarity=0.086  Sum_probs=111.6

Q ss_pred             EEEEccCCCChhHHHHHHHHhhccCCccccccccccccchhhHHhhcccCCCcEEEEEEeeCCC-CcEEEEeCCCCCeEE
Q 019826           35 SFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTLT  113 (335)
Q Consensus        35 ~lV~~rg~~s~~v~~L~kDLr~lm~P~t~~~lk~~kkn~lkdf~~~a~~~~~t~livfs~~kk~-~~L~I~rlP~GPTl~  113 (335)
                      +|||++.+++.++++|++||..+ +|++.  +. |.+..++++++.|    +|+++++++.++. ..|.| ++|.|||++
T Consensus         1 vLITTSr~PS~rtr~F~keL~~i-~P~~~--~~-Rgk~~lkelv~~~----~tdlivv~E~rg~P~~l~i-h~p~gpt~~   71 (154)
T d1w94a1           1 MLLTTSRKPSQRTRSFSQRLSRI-MGWRY--IN-RGKMSLRDVLIEA----RGPVAVVSERHGNPARITF-LDERGGERG   71 (154)
T ss_dssp             CEEEECSSCCHHHHHHHHHHHHH-HTCEE--CC-CTTCCHHHHHHHH----SSCEEEEEEETTEEEEEEE-ECTTSCEEE
T ss_pred             CEEECCCCccHHHHHHHHHHHHh-CCCeE--EE-cCCCcHHHHHHhC----CCcEEEEECCCCCCceEEE-EeCCCCcEE
Confidence            48999999999999999999998 59853  43 5678999998877    5899999999998 77777 999999999


Q ss_pred             EEEecceehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCchhhHHHHHHHHhcCCCCCCCcccCCCCCeEEEEeeecCC
Q 019826          114 FKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDT  193 (335)
Q Consensus       114 F~I~ny~~~~di~~~~k~~~~~g~~~~s~PlLIfngF~t~~~~lkli~~lfq~mFp~~~v~~~~l~~~~rVilf~~~~~~  193 (335)
                      |.+.|+.+.+                 .+|.||+|||.+..+  ..++++|..+||.+...    ..-++|++|+.  ++
T Consensus        72 f~l~~v~l~~-----------------e~p~li~~~f~t~lg--~~v~~~L~~lf~~~~~~----~~~~~~itf~n--~~  126 (154)
T d1w94a1          72 YILFNPSFEM-----------------KKPELADKAVRVSSC--PPGSEGLCNLMGLEVDE----SSSRDAWSIRT--DE  126 (154)
T ss_dssp             EEEEEEEECS-----------------SCCCCSSCCCEESCC--CTTCHHHHHHHTCEECC----SCCTTEEEEEC--CS
T ss_pred             EEEeeEEccc-----------------cCCcCcccccccccc--hhHHHHHHHHcCCChhh----cceeeEEEEec--CC
Confidence            9999997633                 368899999999864  58889999999976532    23345998876  88


Q ss_pred             CeEEEEEE
Q 019826          194 KLIDFRHY  201 (335)
Q Consensus       194 d~I~fRhY  201 (335)
                      |.|+++||
T Consensus       127 d~i~~~~~  134 (154)
T d1w94a1         127 EYAWVMEL  134 (154)
T ss_dssp             SSSEEEEE
T ss_pred             CEEEEEEE
Confidence            99999999