Citrus Sinensis ID: 019828

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
MGGGGGAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKQQAAQEAYDEDDDMQGGAQRVQCAQQ
ccccccccccccHHHHHcccccccccccccccccccccEEEEEEEcHHHHHccEEEEEEEEEEEEccccccccccccccccccccccccEEEEEEEEccccEEEEEEEccccccEEEEEcccccccccccccEEEEEEEEEEEEccccccccEEEEccccccccccccccEEEEEEEEcccccEEEcccEEEEEEccHHHHccccEEEEEcccccEEEEEEccccccccccEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHccccccccccccccccEEEEEcccccHHHHHHHHHHHHcccccccccccccccccccccc
cccccccccHHHHHHHHHccccccccccccccccccccEEEEEEEEHHHHHcccEEEEEEcccEEccccccccccccccccccccccccEEEEEEEccccHHEEEEccccHcccccEEEccccccccccccEEEEEEEEEEEEEccccccccEEEEccccccccccccccEEEEEEEcccccEEEccccEEEEEEEEHHHHHcccEEEEEcccccEEEEEEccccEEccccEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHccccccccccccccccccEEEEEcccHHHHHHHcccccccccccccccccccccEEEccc
mgggggahdpfdifqsffggspfgggssrgrrqrrgedvihpLKVSLEDLyngtskklslsrnvictkckgkgsksgasmkcsgcqgsgmkvsirhlgpsmiqqmqhpcneckgtgetindkdrcpqckgekviqEKKVLEVIVEKGmqngqkitfpgeadeapdtvtGDIVFVLQqkehpkfkrkgddlFVEHTLSLTEALCGFQFVIthldgrqlliksqpgevvkpdqfkaindegmpmyqrpfmrgklyihftvdfpeslspdqckmletvlpprtsvqltdmeldeceettlhdvNIEEEMRRKQQAAQEaydedddmqggaqrVQCAQQ
mgggggahDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLyngtskklslsrnvICTKckgkgsksgasmkcsgCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTgetindkdrcpqckgekviqekkVLEVIVEKGmqngqkitfpgeadeapdTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIksqpgevvkpdqfkaindegmPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETtlhdvnieeeMRRKQQAAQEAYDEDDDMQGGAQRVQCAQQ
MGGGGGAHDPFDIfqsffggspfgggssrgrrqrrgEDVIHPLKVSLEDLYNGTSKKLSLSRNVIctkckgkgsksgasmkcsgcQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKqqaaqeaydedddmqGGAQRVQCAQQ
*************F**F**********************IHPLKVSLEDLYNGTSKKLSLSRNVICTKC*********************************************************QCKGEKVIQEKKVLEVIVEKGMQN**KITF********DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVL***********************************************************
************IFQSF*************************LKVSLEDLYNGTSKKLSLSRNVICTKCK***********C*GCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVL***************CEETTL**************************************
MGGGGGAHDPFDIFQSFFGGSPFG***********GEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCK***************QGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEE******************************
*******HDPFDIFQSFFGGSP*************GEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKG**S*ASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEE******************************
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MGGGGGAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKQQAAQEAYDEDDDMQGGAQRVQCAQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query335 2.2.26 [Sep-21-2011]
Q04960413 DnaJ protein homolog OS=C N/A no 0.973 0.789 0.905 1e-165
P43644417 DnaJ protein homolog ANJ1 N/A no 0.976 0.784 0.875 1e-162
P42824418 DnaJ protein homolog 2 OS N/A no 0.982 0.787 0.858 1e-157
P42825419 Chaperone protein dnaJ 2 yes no 0.976 0.780 0.794 1e-155
Q03363397 DnaJ protein homolog 1 (F N/A no 0.979 0.826 0.851 1e-154
Q94AW8420 Chaperone protein dnaJ 3 no no 0.979 0.780 0.824 1e-151
P63036397 DnaJ homolog subfamily A yes no 0.922 0.778 0.495 2e-83
P63037397 DnaJ homolog subfamily A yes no 0.922 0.778 0.495 2e-83
P31689397 DnaJ homolog subfamily A yes no 0.922 0.778 0.495 2e-83
Q5E954397 DnaJ homolog subfamily A yes no 0.922 0.778 0.495 2e-83
>sp|Q04960|DNJH_CUCSA DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1 Back     alignment and function desciption
 Score =  579 bits (1493), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 298/329 (90%), Positives = 313/329 (95%), Gaps = 3/329 (0%)

Query: 8   HDPFDIFQSFFGGSPFGGGSSRGRRQRRG-EDVIHPLKVSLEDLYNGTSKKLSLSRNVIC 66
           HDPFDIFQSFFGGSPFGGG S   R++R  EDVIHPLKVSLEDLYNGTSKKLSLSRNVIC
Sbjct: 87  HDPFDIFQSFFGGSPFGGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVIC 146

Query: 67  TKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCP 126
           +KCKGKGSKSGASMKC GCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRC 
Sbjct: 147 SKCKGKGSKSGASMKCPGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCS 206

Query: 127 QCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRK 186
           QCKGEKV+QEKKVLEVIVEKGMQN QKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRK
Sbjct: 207 QCKGEKVVQEKKVLEVIVEKGMQNAQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRK 266

Query: 187 GDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 246
           GDDLFVEHTLSL E+LCGFQF++THLDGRQLLIKS PGEVVKPDQFKAINDEGMPMYQRP
Sbjct: 267 GDDLFVEHTLSLVESLCGFQFILTHLDGRQLLIKSLPGEVVKPDQFKAINDEGMPMYQRP 326

Query: 247 FMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEM 306
           FM+GKLYIHF+V+FP+SL+P+QCK LE VLPPRTSVQL+DMELDECEETTLHDVNIEEEM
Sbjct: 327 FMKGKLYIHFSVEFPDSLNPEQCKALEGVLPPRTSVQLSDMELDECEETTLHDVNIEEEM 386

Query: 307 RRKQQAAQEAYDEDDDMQGGAQRVQCAQQ 335
           RRKQ  AQEAYDED+DM GGAQRVQCAQQ
Sbjct: 387 RRKQ--AQEAYDEDEDMHGGAQRVQCAQQ 413
Have a continuous role in plant development probably in the structural organization of compartments.
Cucumis sativus (taxid: 3659)
>sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1 OS=Atriplex nummularia PE=2 SV=1 Back     alignment and function description
>sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE=2 SV=1 Back     alignment and function description
>sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 OS=Arabidopsis thaliana GN=ATJ2 PE=1 SV=2 Back     alignment and function description
>sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (Fragment) OS=Allium porrum GN=DNAJ1 PE=2 SV=1 Back     alignment and function description
>sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 OS=Arabidopsis thaliana GN=ATJ3 PE=1 SV=2 Back     alignment and function description
>sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 OS=Rattus norvegicus GN=Dnaja1 PE=2 SV=1 Back     alignment and function description
>sp|P63037|DNJA1_MOUSE DnaJ homolog subfamily A member 1 OS=Mus musculus GN=Dnaja1 PE=1 SV=1 Back     alignment and function description
>sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 OS=Homo sapiens GN=DNAJA1 PE=1 SV=2 Back     alignment and function description
>sp|Q5E954|DNJA1_BOVIN DnaJ homolog subfamily A member 1 OS=Bos taurus GN=DNAJA1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query335
255546721418 Chaperone protein dnaJ, putative [Ricinu 0.979 0.784 0.927 1e-168
4210948415 DnaJ protein [Hevea brasiliensis] 0.997 0.804 0.898 1e-168
4008159420 DnaJ homolog [Salix gilgiana] 0.994 0.792 0.889 1e-167
350536331419 DnaJ-like protein [Solanum lycopersicum] 0.979 0.782 0.885 1e-166
224097588420 predicted protein [Populus trichocarpa] 0.982 0.783 0.894 1e-165
225463715416 PREDICTED: dnaJ protein homolog [Vitis v 0.976 0.786 0.905 1e-165
224113389422 predicted protein [Populus trichocarpa] 0.982 0.779 0.888 1e-164
10945669418 J1P [Daucus carota] gi|10945671|gb|AAG24 0.979 0.784 0.896 1e-164
161137763417 DnaJ [Viola baoshanensis] 0.979 0.786 0.893 1e-164
147845028407 hypothetical protein VITISV_000291 [Viti 0.982 0.808 0.874 1e-163
>gi|255546721|ref|XP_002514419.1| Chaperone protein dnaJ, putative [Ricinus communis] gi|111143344|gb|ABH06547.1| molecular chaperone [Ricinus communis] gi|223546415|gb|EEF47915.1| Chaperone protein dnaJ, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 305/329 (92%), Positives = 316/329 (96%), Gaps = 1/329 (0%)

Query: 8   HDPFDIFQSFFGGSPFGGGSSRGRRQRRG-EDVIHPLKVSLEDLYNGTSKKLSLSRNVIC 66
           HDPFDIFQSFFGGSPFGGG S   R++R  EDVIHPLKVSLEDLYNGTSKKLSLSRNVIC
Sbjct: 90  HDPFDIFQSFFGGSPFGGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVIC 149

Query: 67  TKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCP 126
           +KCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCP
Sbjct: 150 SKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCP 209

Query: 127 QCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRK 186
           QCKGEKV+QEKKVLEVIVEKGMQNGQKITFPGEADEAPDT+TGDIVFVLQQKEHPKFKRK
Sbjct: 210 QCKGEKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTITGDIVFVLQQKEHPKFKRK 269

Query: 187 GDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 246
           GDDL VEHTLSLTEALCGFQF++THLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP
Sbjct: 270 GDDLVVEHTLSLTEALCGFQFILTHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP 329

Query: 247 FMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEM 306
           FMRGKLYIHF+VDFP+SL PDQCK LETVLP RTSVQL+DMELDECEETTLHDVN EEEM
Sbjct: 330 FMRGKLYIHFSVDFPDSLPPDQCKALETVLPSRTSVQLSDMELDECEETTLHDVNFEEEM 389

Query: 307 RRKQQAAQEAYDEDDDMQGGAQRVQCAQQ 335
           RRKQQ AQEAYDED+DM GGAQRVQCAQQ
Sbjct: 390 RRKQQQAQEAYDEDEDMHGGAQRVQCAQQ 418

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|4210948|gb|AAD12055.1| DnaJ protein [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|4008159|dbj|BAA35121.1| DnaJ homolog [Salix gilgiana] Back     alignment and taxonomy information
>gi|350536331|ref|NP_001234241.1| DnaJ-like protein [Solanum lycopersicum] gi|6782421|gb|AAF28382.1|AF124139_1 DnaJ-like protein [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|224097588|ref|XP_002310999.1| predicted protein [Populus trichocarpa] gi|222850819|gb|EEE88366.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225463715|ref|XP_002263156.1| PREDICTED: dnaJ protein homolog [Vitis vinifera] gi|296084435|emb|CBI24994.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224113389|ref|XP_002316479.1| predicted protein [Populus trichocarpa] gi|118486965|gb|ABK95315.1| unknown [Populus trichocarpa] gi|222865519|gb|EEF02650.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|10945669|gb|AAG24642.1|AF308737_1 J1P [Daucus carota] gi|10945671|gb|AAG24643.1|AF308738_1 J2P [Daucus carota] Back     alignment and taxonomy information
>gi|161137763|gb|ABX57881.1| DnaJ [Viola baoshanensis] Back     alignment and taxonomy information
>gi|147845028|emb|CAN82708.1| hypothetical protein VITISV_000291 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query335
TAIR|locus:2081378420 J3 [Arabidopsis thaliana (taxi 1.0 0.797 0.701 1.3e-123
TAIR|locus:505006628419 J2 "DNAJ homologue 2" [Arabido 1.0 0.799 0.670 6.7e-120
ZFIN|ZDB-GENE-030131-2884413 dnaja2l "DnaJ (Hsp40) homolog, 0.895 0.726 0.456 1.1e-69
UNIPROTKB|O60884412 DNAJA2 "DnaJ homolog subfamily 0.991 0.805 0.425 4.9e-69
UNIPROTKB|Q2HJ94412 DNAJA2 "DnaJ homolog subfamily 0.874 0.711 0.461 8e-69
UNIPROTKB|E2R7F3413 DNAJA2 "Uncharacterized protei 0.874 0.709 0.461 1e-68
UNIPROTKB|J9NYF6389 DNAJA2 "Uncharacterized protei 0.874 0.753 0.461 1e-68
UNIPROTKB|F1RP05412 LOC100521133 "Uncharacterized 0.874 0.711 0.461 1e-68
MGI|MGI:1931882412 Dnaja2 "DnaJ (Hsp40) homolog, 0.991 0.805 0.422 1.7e-68
UNIPROTKB|Q5M9H7412 Dnaja2 "DnaJ homolog subfamily 0.991 0.805 0.422 1.7e-68
TAIR|locus:2081378 J3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1215 (432.8 bits), Expect = 1.3e-123, P = 1.3e-123
 Identities = 237/338 (70%), Positives = 257/338 (76%)

Query:     1 MGGGGGAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSL 60
             MGGGGG HDPFDI                       EDV+HPLKVSLED+Y GT KKLSL
Sbjct:    83 MGGGGGGHDPFDIFSSFFGGGPFGGNTSRQRRQRRGEDVVHPLKVSLEDVYLGTMKKLSL 142

Query:    61 SRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 120
             SRN +                    QGSGMKVSIR LGP MIQQMQH CNECKGTGETIN
Sbjct:   143 SRNALCSKCNGKGSKSGASLKCGGCQGSGMKVSIRQLGPGMIQQMQHACNECKGTGETIN 202

Query:   121 DKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEH 180
             D+DRCPQCKG+KVI EKKVLEV VEKGMQ+ QKITF G+ADEAPDTVTGDIVFVLQQKEH
Sbjct:   203 DRDRCPQCKGDKVIPEKKVLEVNVEKGMQHSQKITFEGQADEAPDTVTGDIVFVLQQKEH 262

Query:   181 PKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGM 240
             PKFKRKG+DLFVEHTLSLTEALCGFQFV+THLDGR LLIKS PGEVVKPD +KAI+DEGM
Sbjct:   263 PKFKRKGEDLFVEHTLSLTEALCGFQFVLTHLDGRSLLIKSNPGEVVKPDSYKAISDEGM 322

Query:   241 PMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDV 300
             P+YQRPFM+GKLYIHFTV+FP+SLSPDQ K LE VLP  ++ QL+DME+DECEETTLHDV
Sbjct:   323 PIYQRPFMKGKLYIHFTVEFPDSLSPDQTKALEAVLPKPSTAQLSDMEIDECEETTLHDV 382

Query:   301 NIEEEMRRKXXXXXXXXXXXXXXX---GGAQRVQCAQQ 335
             NIE+EMRRK                  GGAQRVQCAQQ
Sbjct:   383 NIEDEMRRKAQAQREAYDDDDEDDDHPGGAQRVQCAQQ 420
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=ISS
GO:0031072 "heat shock protein binding" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0005730 "nucleolus" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IMP
GO:0043462 "regulation of ATPase activity" evidence=IMP
GO:0005829 "cytosol" evidence=IDA
GO:0009911 "positive regulation of flower development" evidence=IMP
GO:0048573 "photoperiodism, flowering" evidence=IMP
GO:0009506 "plasmodesma" evidence=IDA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
TAIR|locus:505006628 J2 "DNAJ homologue 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2884 dnaja2l "DnaJ (Hsp40) homolog, subfamily A, member 2, like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O60884 DNAJA2 "DnaJ homolog subfamily A member 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q2HJ94 DNAJA2 "DnaJ homolog subfamily A member 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R7F3 DNAJA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NYF6 DNAJA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RP05 LOC100521133 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1931882 Dnaja2 "DnaJ (Hsp40) homolog, subfamily A, member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5M9H7 Dnaja2 "DnaJ homolog subfamily A member 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P43644DNJH_ATRNUNo assigned EC number0.87570.97610.7841N/Ano
Q03363DNJH1_ALLPONo assigned EC number0.85150.97910.8261N/Ano
Q04960DNJH_CUCSANo assigned EC number0.90570.97310.7893N/Ano
P42824DNJH2_ALLPONo assigned EC number0.85800.98200.7870N/Ano
P42825DNAJ2_ARATHNo assigned EC number0.79450.97610.7804yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_VIII0594
hypothetical protein (421 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.261.46.1
SubName- Full=Putative uncharacterized protein; (648 aa)
  •     0.497
grail3.0261001101
hypothetical protein (648 aa)
  •     0.497
fgenesh4_pm.C_LG_III000644
hypothetical protein (651 aa)
  •     0.497
eugene3.02080009
hypothetical protein (656 aa)
  •     0.497
eugene3.00080489
hypothetical protein (649 aa)
  •     0.497
estExt_fgenesh4_pm.C_LG_VIII0195
hypothetical protein (649 aa)
  •     0.497
estExt_fgenesh4_pg.C_LG_X1852
hypothetical protein (648 aa)
  •     0.497
grail3.0261001401
hypothetical protein (124 aa)
  •     0.496
eugene3.02610008
hypothetical protein (132 aa)
  •     0.496
eugene3.02080008
hypothetical protein (655 aa)
  •     0.496

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
PTZ00037421 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov 1e-113
COG0484371 COG0484, DnaJ, DnaJ-class molecular chaperone with 1e-74
TIGR02349354 TIGR02349, DnaJ_bact, chaperone protein DnaJ 4e-59
PRK10767371 PRK10767, PRK10767, chaperone protein DnaJ; Provis 4e-44
cd10747158 cd10747, DnaJ_C, C-terminal substrate binding doma 2e-43
PRK14281397 PRK14281, PRK14281, chaperone protein DnaJ; Provis 4e-37
PRK14283378 PRK14283, PRK14283, chaperone protein DnaJ; Provis 3e-36
PRK14278378 PRK14278, PRK14278, chaperone protein DnaJ; Provis 6e-36
PRK14289386 PRK14289, PRK14289, chaperone protein DnaJ; Provis 4e-35
PRK14291382 PRK14291, PRK14291, chaperone protein DnaJ; Provis 3e-34
PRK14285365 PRK14285, PRK14285, chaperone protein DnaJ; Provis 3e-33
PRK14292371 PRK14292, PRK14292, chaperone protein DnaJ; Provis 2e-32
PRK14301373 PRK14301, PRK14301, chaperone protein DnaJ; Provis 4e-32
PRK14293374 PRK14293, PRK14293, chaperone protein DnaJ; Provis 6e-32
PRK14277386 PRK14277, PRK14277, chaperone protein DnaJ; Provis 3e-31
PRK14286372 PRK14286, PRK14286, chaperone protein DnaJ; Provis 1e-30
PRK14290365 PRK14290, PRK14290, chaperone protein DnaJ; Provis 2e-30
PRK14294366 PRK14294, PRK14294, chaperone protein DnaJ; Provis 4e-30
PRK14297380 PRK14297, PRK14297, chaperone protein DnaJ; Provis 5e-30
PRK14296372 PRK14296, PRK14296, chaperone protein DnaJ; Provis 1e-29
PRK14282369 PRK14282, PRK14282, chaperone protein DnaJ; Provis 3e-29
PRK14280376 PRK14280, PRK14280, chaperone protein DnaJ; Provis 4e-29
PRK14279392 PRK14279, PRK14279, chaperone protein DnaJ; Provis 2e-27
PRK14298377 PRK14298, PRK14298, chaperone protein DnaJ; Provis 8e-27
PRK14276380 PRK14276, PRK14276, chaperone protein DnaJ; Provis 1e-26
PRK14300372 PRK14300, PRK14300, chaperone protein DnaJ; Provis 1e-25
PRK14295389 PRK14295, PRK14295, chaperone protein DnaJ; Provis 1e-24
PRK14284391 PRK14284, PRK14284, chaperone protein DnaJ; Provis 3e-24
pfam0155681 pfam01556, DnaJ_C, DnaJ C terminal domain 7e-24
PRK14287371 PRK14287, PRK14287, chaperone protein DnaJ; Provis 9e-24
PRK14288369 PRK14288, PRK14288, chaperone protein DnaJ; Provis 8e-22
pfam0068465 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain 2e-18
cd1071965 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and H 7e-17
PRK14299291 PRK14299, PRK14299, chaperone protein DnaJ; Provis 9e-07
cd10747158 cd10747, DnaJ_C, C-terminal substrate binding doma 7e-05
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional Back     alignment and domain information 
 Score =  333 bits (856), Expect = e-113
 Identities = 145/335 (43%), Positives = 202/335 (60%), Gaps = 11/335 (3%)

Query: 3   GGGGAHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSR 62
           GG    D  D+F   FGG    GG      ++RGED++  LKV+LE +YNG  +KL++++
Sbjct: 96  GGEQPADASDLFDLIFGGGRKPGG------KKRGEDIVSHLKVTLEQIYNGAMRKLAINK 149

Query: 63  NVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 122
           +VIC  C+G G    A + C  C G G++V IR +G  MI Q Q  CN C G G+ I + 
Sbjct: 150 DVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGS-MIHQTQSTCNSCNGQGKIIPES 208

Query: 123 DRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPK 182
            +C  C G+ V + +K+LEV ++KG+ N  KITF GEADE P+ + G++VF+L +K H  
Sbjct: 209 KKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVVFILNEKPHDT 268

Query: 183 FKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPM 242
           FKR+G DLF+   +SL EAL GF F ITHLDGR+LL+ + PGEVVKP   K IN+EGMP 
Sbjct: 269 FKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPT 328

Query: 243 YQRPFMRGKLYIHFTVDFPESLSPD-QCKMLETVLPPRTSVQLTDMELDECEETTLHDVN 301
           Y+ PF +G LY+ F V FP       + K +   L P+   +  D+E  E E  T  +V+
Sbjct: 329 YKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQNPEEKKDLEDTEIEVVTAQNVD 388

Query: 302 IEE-EMRRKQQAAQEAYDEDDDMQGGAQRVQCAQQ 335
            EE + R ++Q  QE  D++       +RV C QQ
Sbjct: 389 PEEVKDRDQKQQYQEDEDDEHHQ--EGERVACRQQ 421

Length = 421
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ Back     alignment and domain information
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40 Back     alignment and domain information
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain Back     alignment and domain information
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain Back     alignment and domain information
>gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40 Back     alignment and domain information
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 335
PTZ00037421 DnaJ_C chaperone protein; Provisional 100.0
COG0484371 DnaJ DnaJ-class molecular chaperone with C-termina 100.0
PRK14296372 chaperone protein DnaJ; Provisional 100.0
PRK14278378 chaperone protein DnaJ; Provisional 100.0
PRK14298377 chaperone protein DnaJ; Provisional 100.0
PRK14277386 chaperone protein DnaJ; Provisional 100.0
PRK14276380 chaperone protein DnaJ; Provisional 100.0
PRK14288369 chaperone protein DnaJ; Provisional 100.0
KOG0712337 consensus Molecular chaperone (DnaJ superfamily) [ 100.0
PRK14287371 chaperone protein DnaJ; Provisional 100.0
PRK14280376 chaperone protein DnaJ; Provisional 100.0
PRK14286372 chaperone protein DnaJ; Provisional 100.0
PRK14297380 chaperone protein DnaJ; Provisional 100.0
PRK14281397 chaperone protein DnaJ; Provisional 100.0
PRK14285365 chaperone protein DnaJ; Provisional 100.0
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 100.0
PRK14282369 chaperone protein DnaJ; Provisional 100.0
PRK14279392 chaperone protein DnaJ; Provisional 100.0
PRK14284391 chaperone protein DnaJ; Provisional 100.0
PRK14295389 chaperone protein DnaJ; Provisional 100.0
PRK14301373 chaperone protein DnaJ; Provisional 100.0
PRK14290365 chaperone protein DnaJ; Provisional 100.0
PRK14293374 chaperone protein DnaJ; Provisional 100.0
PRK10767371 chaperone protein DnaJ; Provisional 100.0
PRK14300372 chaperone protein DnaJ; Provisional 100.0
PRK14294366 chaperone protein DnaJ; Provisional 100.0
PRK14292371 chaperone protein DnaJ; Provisional 100.0
PRK14291382 chaperone protein DnaJ; Provisional 100.0
PRK14289386 chaperone protein DnaJ; Provisional 100.0
PRK14283378 chaperone protein DnaJ; Provisional 100.0
PRK10266306 curved DNA-binding protein CbpA; Provisional 100.0
PRK14299291 chaperone protein DnaJ; Provisional 100.0
TIGR03835871 termin_org_DnaJ terminal organelle assembly protei 100.0
PF0155681 CTDII: DnaJ C terminal domain; InterPro: IPR002939 99.87
KOG0713336 consensus Molecular chaperone (DnaJ superfamily) [ 99.79
KOG0715288 consensus Molecular chaperone (DnaJ superfamily) [ 99.68
PF0068466 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0 99.58
COG0484371 DnaJ DnaJ-class molecular chaperone with C-termina 99.42
PRK14282369 chaperone protein DnaJ; Provisional 99.26
PRK14290365 chaperone protein DnaJ; Provisional 99.2
PRK14294366 chaperone protein DnaJ; Provisional 99.19
PRK14285365 chaperone protein DnaJ; Provisional 99.17
PRK14289386 chaperone protein DnaJ; Provisional 99.16
PRK14298377 chaperone protein DnaJ; Provisional 99.12
PRK14300372 chaperone protein DnaJ; Provisional 99.11
PRK14287371 chaperone protein DnaJ; Provisional 99.11
PRK10767371 chaperone protein DnaJ; Provisional 99.08
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 99.06
PRK14293374 chaperone protein DnaJ; Provisional 99.06
PRK14279392 chaperone protein DnaJ; Provisional 99.05
PRK14284391 chaperone protein DnaJ; Provisional 99.04
PRK14278378 chaperone protein DnaJ; Provisional 99.02
PRK14301373 chaperone protein DnaJ; Provisional 99.01
PRK14295389 chaperone protein DnaJ; Provisional 98.99
PRK14297380 chaperone protein DnaJ; Provisional 98.97
PRK14288369 chaperone protein DnaJ; Provisional 98.95
PRK14296372 chaperone protein DnaJ; Provisional 98.94
PRK14286372 chaperone protein DnaJ; Provisional 98.93
PRK14276380 chaperone protein DnaJ; Provisional 98.93
PRK14299291 chaperone protein DnaJ; Provisional 98.91
PRK14280376 chaperone protein DnaJ; Provisional 98.91
PRK14292371 chaperone protein DnaJ; Provisional 98.9
PRK14277386 chaperone protein DnaJ; Provisional 98.9
PLN03165111 chaperone protein dnaJ-related; Provisional 98.9
PRK14283378 chaperone protein DnaJ; Provisional 98.9
PRK14281397 chaperone protein DnaJ; Provisional 98.89
PRK14291382 chaperone protein DnaJ; Provisional 98.79
PTZ00037421 DnaJ_C chaperone protein; Provisional 98.78
PRK10266306 curved DNA-binding protein CbpA; Provisional 98.74
KOG0714306 consensus Molecular chaperone (DnaJ superfamily) [ 98.66
PF0155681 CTDII: DnaJ C terminal domain; InterPro: IPR002939 98.43
TIGR02642186 phage_xxxx uncharacterized phage protein. This unc 98.36
KOG0712337 consensus Molecular chaperone (DnaJ superfamily) [ 97.9
COG1107 715 Archaea-specific RecJ-like exonuclease, contains D 97.72
KOG2813406 consensus Predicted molecular chaperone, contains 97.45
TIGR03835871 termin_org_DnaJ terminal organelle assembly protei 97.42
PF0068466 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0 97.33
COG1107 715 Archaea-specific RecJ-like exonuclease, contains D 96.28
KOG2813406 consensus Predicted molecular chaperone, contains 96.16
PLN03165111 chaperone protein dnaJ-related; Provisional 95.94
TIGR02642186 phage_xxxx uncharacterized phage protein. This unc 95.39
KOG2824281 consensus Glutaredoxin-related protein [Posttransl 87.72
KOG0715288 consensus Molecular chaperone (DnaJ superfamily) [ 87.56
cd03031147 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d 83.34
COG0178935 UvrA Excinuclease ATPase subunit [DNA replication, 80.38
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.5e-76  Score=582.62  Aligned_cols=318  Identities=44%  Similarity=0.865  Sum_probs=284.5

Q ss_pred             CCCchhhhhhhcCCCCCCCCCCCCCCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCcccCCCCC
Q 019828            7 AHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQ   86 (335)
Q Consensus         7 ~~~~~diF~~fFgg~~~~~~~~~~~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~   86 (335)
                      +.++.|+|+.|||++    +  ++.+++++.|+.+.|.|||||+|+|+++++.+.+.+.|..|+|+|.......+|+.|+
T Consensus       100 ~~d~~d~f~~~Fggg----~--~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~  173 (421)
T PTZ00037        100 PADASDLFDLIFGGG----R--KPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCN  173 (421)
T ss_pred             CcchhhhHHHhhccc----c--ccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCC
Confidence            346789999999742    1  1233467999999999999999999999999999999999999998776668999999


Q ss_pred             CccEEEEEEecCCccceeeeecCCCCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCCCC
Q 019828           87 GSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDT  166 (335)
Q Consensus        87 G~G~~~~~~~~gpg~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~~~  166 (335)
                      |+|+++.++++|| |++|++++|+.|+|+|+++.++++|+.|+|++++.+.+.|+|+|||||.+|++|+|+|+|++.++.
T Consensus       174 G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~  252 (421)
T PTZ00037        174 GQGIRVQIRQMGS-MIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPNE  252 (421)
T ss_pred             CCCeEEEEEeecc-eeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCCCC
Confidence            9999999999999 999999999999999999998999999999999999999999999999999999999999998888


Q ss_pred             CcccEEEEEEeecCCCcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCC
Q 019828          167 VTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRP  246 (335)
Q Consensus       167 ~~GDliv~i~~~~h~~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~  246 (335)
                      .||||||+|++++|+.|+|+|+|||++++|||+|||+|+++.|+||||+.|.|++|||+|++||++++|+|+|||.++++
T Consensus       253 ~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~  332 (421)
T PTZ00037        253 IPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSP  332 (421)
T ss_pred             CCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987655


Q ss_pred             CCCCceEEEEEEeCC--CCCCHHHHHHHHhhCCCCCCCCCccCccccceeeeeecCChhHHHHHHhhhcccccccCCC--
Q 019828          247 FMRGKLYIHFTVDFP--ESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRKQQAAQEAYDEDDD--  322 (335)
Q Consensus       247 ~~~GdL~i~f~V~fP--~~l~~~~~~~L~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  322 (335)
                      +.+|||||+|+|.||  +.|+++|+++|++|||.++.... +++.+++|+++|+++|+++...+   .++++|+||+|  
T Consensus       333 ~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  408 (421)
T PTZ00037        333 FKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQNPEEKK-DLEDTEIEVVTAQNVDPEEVKDR---DQKQQYQEDEDDE  408 (421)
T ss_pred             CCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhccCCCCCCC-CCCcccceeEecccCCHHHhhhh---HHHHhhccccccc
Confidence            679999999999999  88999999999999987655443 55678899999999999875443   23455544433  


Q ss_pred             CCCCCCCCCCcCC
Q 019828          323 MQGGAQRVQCAQQ  335 (335)
Q Consensus       323 ~~~~~~~~~C~~q  335 (335)
                      +++++++||||||
T Consensus       409 ~~~~~~~v~c~~q  421 (421)
T PTZ00037        409 HHQEGERVACRQQ  421 (421)
T ss_pred             cCCCCCccccCCC
Confidence            2346789999998

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress Back     alignment and domain information
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation Back     alignment and domain information
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PLN03165 chaperone protein dnaJ-related; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress Back     alignment and domain information
>TIGR02642 phage_xxxx uncharacterized phage protein Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation Back     alignment and domain information
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03165 chaperone protein dnaJ-related; Provisional Back     alignment and domain information
>TIGR02642 phage_xxxx uncharacterized phage protein Back     alignment and domain information
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs Back     alignment and domain information
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
1nlt_A248 The Crystal Structure Of Hsp40 Ydj1 Length = 248 3e-45
3agz_A190 Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi 1e-24
2qld_A183 Human Hsp40 Hdj1 Length = 183 1e-24
3agx_A181 Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi 1e-24
2q2g_A180 Crystal Structure Of Dimerization Domain Of Hsp40 F 7e-23
1c3g_A170 S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 1 2e-19
2b26_A173 The Crystal Structure Of The Protein Complex Of Yea 3e-19
1xao_A121 Hsp40-Ydj1 Dimerization Domain Length = 121 1e-13
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248 Back     alignment and structure 
Iteration: 1

 Score =  178 bits (452), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 96/239 (40%), Positives = 138/239 (57%), Gaps = 4/239 (1%)
Query: 37  EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRH 96
           +D+ H +  SLE+LY G + KL+L++ ++                     G G+K   R 
Sbjct: 12  KDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQ 71
Query: 97  LGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITF 156
           +GP MIQ+ Q  C+ C GTG+ I+ KDRC  C G+KV  E+K+LEV VE GM++GQ+I F
Sbjct: 72  MGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVF 130
Query: 157 PGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQ 216
            GEAD+APD + GD+VF++ ++ H  FKR GDDL  E  + L  A+ G +F + H+ G  
Sbjct: 131 KGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDW 190
Query: 217 LLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPES--LSPDQCKMLE 273
           L +   PGEV+ P   K I  +GMP+ +     G L I FT+  PE+   S +  K LE
Sbjct: 191 LKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGY-GNLIIKFTIKDPENHFTSEENLKKLE 248
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 Length = 190 Back     alignment and structure
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1 Length = 183 Back     alignment and structure
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Length = 181 Back     alignment and structure
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From Cryptosporidium Parvum, Cgd2_1800 Length = 180 Back     alignment and structure
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 170 Back     alignment and structure
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast Hsp40 Sis1 And Hsp70 Ssa1 Length = 173 Back     alignment and structure
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain Length = 121 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 1e-128
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 4e-87
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 2e-06
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 2e-79
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 3e-73
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 3e-51
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 3e-25
2ctt_A104 DNAJ homolog subfamily A member 3; ZING finger, be 5e-18
1exk_A79 DNAJ protein; extended beta-hairpin, CXXCXGXG, zin 1e-12
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248 Back     alignment and structure
 Score =  366 bits (941), Expect = e-128
 Identities = 107/248 (43%), Positives = 157/248 (63%), Gaps = 2/248 (0%)

Query: 26  GSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGC 85
           G+ R R  +RG+D+ H +  SLE+LY G + KL+L++ ++C +C+G+G K GA  KC+ C
Sbjct: 1   GAQRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSC 60

Query: 86  QGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVE 145
            G G+K   R +GP MIQ+ Q  C+ C GTG+ I+ KDRC  C G+KV  E+K+LEV VE
Sbjct: 61  NGQGIKFVTRQMGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVE 119

Query: 146 KGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGF 205
            GM++GQ+I F GEAD+APD + GD+VF++ ++ H  FKR GDDL  E  + L  A+ G 
Sbjct: 120 PGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGG 179

Query: 206 QFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLS 265
           +F + H+ G  L +   PGEV+ P   K I  +GMP+ +     G L I FT+  PE+  
Sbjct: 180 EFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPENHF 238

Query: 266 PDQCKMLE 273
             +  + +
Sbjct: 239 TSEENLKK 246
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181 Back     alignment and structure
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181 Back     alignment and structure
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180 Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170 Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329 Back     alignment and structure
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104 Back     alignment and structure
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Length = 79 Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query335
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 100.0
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 100.0
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 100.0
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 100.0
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 100.0
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 99.96
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 99.94
2ctt_A104 DNAJ homolog subfamily A member 3; ZING finger, be 99.84
1exk_A79 DNAJ protein; extended beta-hairpin, CXXCXGXG, zin 99.5
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 98.94
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 98.81
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 98.68
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 98.55
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 98.54
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 98.5
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 98.43
3lcz_A53 YCZA, inhibitor of trap, regulated by T-box (Trp) 97.93
3pmq_A 669 Decaheme cytochrome C MTRF; greek KEY, C type cyto 97.37
1exk_A79 DNAJ protein; extended beta-hairpin, CXXCXGXG, zin 97.35
2ctt_A104 DNAJ homolog subfamily A member 3; ZING finger, be 97.31
2bx9_A53 Anti-trap, AT, tryptophan RNA-binding attenuator p 96.65
2bx9_A53 Anti-trap, AT, tryptophan RNA-binding attenuator p 96.54
3lcz_A53 YCZA, inhibitor of trap, regulated by T-box (Trp) 96.5
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
Probab=100.00  E-value=7.8e-67  Score=482.96  Aligned_cols=241  Identities=45%  Similarity=0.871  Sum_probs=220.6

Q ss_pred             CCCCCCCceEEEEEeehhhhhcCceeEEeeeeeEecCCCCCCCccCCCcccCCCCCCccEEEEEEecCCccceeeeecCC
Q 019828           31 RRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICTKCKGKGSKSGASMKCSGCQGSGMKVSIRHLGPSMIQQMQHPCN  110 (335)
Q Consensus        31 ~~~~~g~d~~~~l~vtLee~y~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~q~~~~C~  110 (335)
                      +++++++|+.+.|.|||||+|+|++++|.+.+.+.|++|+|+|++.++..+|+.|+|+|+++..+++|| |++|++++|+
T Consensus         6 ~~~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~   84 (248)
T 1nlt_A            6 RGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MIQRFQTECD   84 (248)
T ss_dssp             --CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSS-EEEEEECSCT
T ss_pred             CCCCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCc-eEEEEEEcCC
Confidence            345689999999999999999999999999999999999999999887789999999999999999999 9999999999


Q ss_pred             CCCceeEEEcCcCCCCCCCCceEEEeeEEEEEEecCCCcCCCeEEecCCCCCCCCCCcccEEEEEEeecCCCcccccccc
Q 019828          111 ECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDL  190 (335)
Q Consensus       111 ~C~G~G~~i~~~~~C~~C~G~g~~~e~k~l~V~Ip~G~~~g~~i~~~g~G~~~~~~~~GDliv~i~~~~h~~F~R~g~dL  190 (335)
                      .|+|+|+++.++++|+.|+|++++.+.++|+|+|||||++|++|+|+|+|++.++..||||||+|++++|+.|+|+|+||
T Consensus        85 ~C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL  164 (248)
T 1nlt_A           85 VCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDL  164 (248)
T ss_dssp             TCSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEE
T ss_pred             CCCCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEE
Confidence            99999999988899999999999999999999999999999999999999999988999999999999999999999999


Q ss_pred             eeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCCCC--CCHHH
Q 019828          191 FVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPES--LSPDQ  268 (335)
Q Consensus       191 ~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP~~--l~~~~  268 (335)
                      |++++|||+|||+|++++|+||||+.+.|++|||+|++||++++|+|+|||..+++ .+|||||+|+|+||++  |+++|
T Consensus       165 ~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~-~~GDL~V~~~V~~P~~~~Ls~~q  243 (248)
T 1nlt_A          165 VYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPENHFTSEEN  243 (248)
T ss_dssp             EEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSC-SBCCEEEEEEEECCC--------
T ss_pred             EEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCC-CcCCEEEEEEEECCCCCCCCHHH
Confidence            99999999999999999999999998999999999999999999999999987554 6899999999999999  99999


Q ss_pred             HHHHH
Q 019828          269 CKMLE  273 (335)
Q Consensus       269 ~~~L~  273 (335)
                      +++|+
T Consensus       244 ~~~l~  248 (248)
T 1nlt_A          244 LKKLE  248 (248)
T ss_dssp             -----
T ss_pred             HHhhC
Confidence            88874
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Back     alignment and structure
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Back     alignment and structure
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Back     alignment and structure
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A Back     alignment and structure
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis} Back     alignment and structure
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Back     alignment and structure
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C* Back     alignment and structure
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C* Back     alignment and structure
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 335
d1c3ga290 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Ba 1e-24
d1nlta374 g.54.1.1 (A:139-212) Mitochondrial protein import 2e-22
d1nlta280 b.4.1.1 (A:258-337) Mitochondrial protein import p 3e-21
d1exka_79 g.54.1.1 (A:) Cysteine-rich domain of the chaperon 2e-12
d1c3ga180 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba 4e-11
d1c3ga180 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba 0.002
d1nlta174 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei 7e-09
d1m1qa_90 a.138.1.3 (A:) Flavocytochrome c3 (respiratory fum 3e-06
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90 Back     information, alignment and structure

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.5 bits (232), Expect = 1e-24
 Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 183 FKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPM 242
           FKR GDDL     LS  E+L GF   I  +DGR L +       V+P Q      +GMP 
Sbjct: 2   FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQ--PVQPSQTSTYPGQGMPT 59

Query: 243 YQRPFMRGKLYIHFTVDFPESLSPDQCKMLE 273
            + P  RG L + + VD+P SL+  Q + ++
Sbjct: 60  PKNPSQRGNLIVKYKVDYPISLNDAQKRAID 90
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74 Back     information, alignment and structure
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80 Back     information, alignment and structure
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Length = 79 Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80 Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80 Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74 Back     information, alignment and structure
>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} Length = 90 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query335
d1c3ga290 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.93
d1nlta280 Mitochondrial protein import protein mas5 (Hsp40, 99.89
d1nlta374 Mitochondrial protein import protein mas5 (Hsp40, 99.73
d1nlta174 Mitochondrial protein import protein mas5 (Hsp40, 99.7
d1c3ga180 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.7
d1exka_79 Cysteine-rich domain of the chaperone protein DnaJ 99.54
d1nlta174 Mitochondrial protein import protein mas5 (Hsp40, 99.31
d1c3ga180 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 98.73
d1c3ga290 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 98.6
d1nlta280 Mitochondrial protein import protein mas5 (Hsp40, 98.42
d1exka_79 Cysteine-rich domain of the chaperone protein DnaJ 97.46
d1nlta374 Mitochondrial protein import protein mas5 (Hsp40, 97.05
d1m1qa_90 Flavocytochrome c3 (respiratory fumarate reductase 96.45
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3.1e-27  Score=183.50  Aligned_cols=90  Identities=38%  Similarity=0.647  Sum_probs=85.7

Q ss_pred             CcccccccceeeccCCHHHHhCCcEEEEecCCCcEEEEEeCCCccccCCcEEEEcCCCCCCCCCCCCCCceEEEEEEeCC
Q 019828          182 KFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFP  261 (335)
Q Consensus       182 ~F~R~g~dL~~~~~I~l~eAl~G~~~~i~~ldGr~l~v~ip~g~vi~~g~~~~i~geGmP~~~~~~~~GdL~i~f~V~fP  261 (335)
                      .|+|+|+||+++++|||+||++|++++|+||||+.|.|++|++  +++|++++|+|+|||.+++++.+|||||+|+|+||
T Consensus         1 ~F~R~G~DL~~~~~I~~~eal~G~~~~i~~~dG~~i~i~ip~~--~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P   78 (90)
T d1c3ga2           1 NFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP--VQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYP   78 (90)
T ss_dssp             SEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSC--CCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCC
T ss_pred             CCeEeCCeEEEEEEeCHHHHhcCCeEEEecccccceecccccc--cccccccccCCCCCCcCCCCCCcCCEEEEEEEEcC
Confidence            4999999999999999999999999999999999999999988  89999999999999998777789999999999999


Q ss_pred             CCCCHHHHHHHH
Q 019828          262 ESLSPDQCKMLE  273 (335)
Q Consensus       262 ~~l~~~~~~~L~  273 (335)
                      ++||++|+++|+
T Consensus        79 ~~ls~~qk~~lE   90 (90)
T d1c3ga2          79 ISLNDAQKRAID   90 (90)
T ss_dssp             SSCCTTHHHHTC
T ss_pred             CCCCHHHHHhhC
Confidence            999999998874
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} Back     information, alignment and structure