Citrus Sinensis ID: 019829

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
Protein Sequence
MATLIYNNLCLLSSRPRVKVLSLSRIVSSSEVEVSKRRVLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAVAMTMGKSVGSCIDIIEDNIDDTDI
Secondary Structure (PSIPRED)
cccEEEEHHHccccccccccccHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEccccEEEEccHHHHEccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHccccccccccccccHHHHHHccccHHHHcccccccHHHHHHHEEEEHHHHHHHccHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccEEccHHHHHHHcccccccccEEEccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
matliynnlcllssrprvkvLSLSRIVSSSEVEVSKRRVLKQVDEELSKGDERAALALVKdlqgkpgglrcfgaarqipqrlytldelklngietrsllspvdetLGSIERNLQLAAIVGGVsawnvfgfnpQQILYLSLALLFLWTVdsvsynggvgSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGilpkgytltSFEALKkegslnvqagtafvdfefleevnsgkvsattlnrFSCIALAGVATEYLLYgyaeggladINKLDALLKGlgftqkkaDSQVRWSLLNTVLLLRRHKGARAKLAVAMTMGKSVGSCIDIiedniddtdi
Flexible Loop (DISEMBL)
matliynnlcllssrprvkvlslsrivsssevevskrrvlkqvdeelskgdeRAALALVkdlqgkpgglRCFGAARQIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGkvsattlnrFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGftqkkadsqvrWSLLNTVLLLRRHKGARAKLAVAMtmgksvgscidiiedniddtdi
Low Complexity Region (SEG)
MATLIYNNLCLLSSRPrvkvlslsrivsssevevskrrvLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAVAMTMGKSVGSCidiiedniddtdi
Disordered region (IsUnstruct)
***LIYNNLCLLSSRPRVKVLSLSRIV***************************ALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAVAMTMGKSVGSCIDIIED*******
Disordered Region (DISOPRED)
*ATLIYNNLCLLSSRPRVKVL********************QVDEELSKGDERAALALVKDLQGKPGGLRCFGA**Q****************ETRSLLSPVDETLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEG***VQAGTAFVDFEFLE******VSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFT****DSQVRWSLLNTVLLLRRHKGARAKLAVAMTMGKSVGSCIDIIEDNI*****
Disordered Region (DISEMBL)
MATLIYNNLCLLSSRPRVKVLSLSRI**********RRVLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAVAMTMGKSVGSCIDIIEDNIDDTDI
Disordered Region (DISPRO)
MATLIYNNLCLLSSRPRVKVLSLSRIVSSSEVEVSKRRVLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAVAMTMGKSVGSCIDIIEDNID****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATLIYNNLCLLSSRPRVKVLSLSRIVSSSEVEVSKRRVLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAVAMTMGKSVGSCIDIIEDNIDDTDI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
224123278	330	predicted protein [Populus trichocarpa]	0.985	1.0	0.805	1e-149
118487460	330	unknown [Populus trichocarpa]	0.985	1.0	0.8	1e-149
255542488	337	conserved hypothetical protein [Ricinus	0.895	0.890	0.843	1e-145
225451100	332	PREDICTED: uncharacterized protein LOC10	0.991	1.0	0.811	1e-144
124360157	340	Peptidase, cysteine peptidase active sit	0.928	0.914	0.784	1e-143
350537327	326	stress regulated protein [Solanum lycope	0.943	0.969	0.775	1e-142
147815273	320	hypothetical protein VITISV_030170 [Viti	0.949	0.993	0.836	1e-141
357512109	347	hypothetical protein MTR_7g114070 [Medic	0.928	0.896	0.767	1e-140
58198153	326	stress regulated protein isoform 3 [Sola	0.943	0.969	0.765	1e-140
297808789	341	hypothetical protein ARALYDRAFT_910860 [	0.925	0.909	0.768	1e-140

>gi|224123278|ref|XP_002319039.1| predicted protein [Populus trichocarpa] gi|222857415|gb|EEE94962.1| predicted protein [Populus trichocarpa]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 270/335 (80%), Positives = 303/335 (90%), Gaps = 5/335 (1%)

Query: 1   MATLIYNNLCLLSSRPRVKVLSLSRIVSSSEVEVSKRRVLKQVDEELSKGDERAALALVK 60
           M T++Y    L+S  PR+++ S  +IV SS V V +++VL+QVD+ELSKGDERAAL+LVK
Sbjct: 1   MGTVVYYT-GLVS--PRLRLCS-KKIVGSS-VGVQRQQVLEQVDKELSKGDERAALSLVK 55

Query: 61  DLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIVG 120
           DLQGKPGGLRCFGA RQIPQRLYTLDELKLNGIETRSLLSPVD TLG+IER LQLA + G
Sbjct: 56  DLQGKPGGLRCFGAGRQIPQRLYTLDELKLNGIETRSLLSPVDATLGAIERTLQLAGVAG 115

Query: 121 GVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQH 180
           G++ WN FGF+PQQIL  SL LLFLWT+DSVS+NGG+GSLVLDTIGHTFSQKYHNRVIQH
Sbjct: 116 GLATWNAFGFSPQQILLFSLGLLFLWTLDSVSFNGGLGSLVLDTIGHTFSQKYHNRVIQH 175

Query: 181 EAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLN 240
           EAGHFLIAY+VGILP+GYTLTS EAL+K+GS NVQAGTAFVDF+FLEEVN+GKVSATTLN
Sbjct: 176 EAGHFLIAYMVGILPRGYTLTSLEALQKDGSFNVQAGTAFVDFDFLEEVNTGKVSATTLN 235

Query: 241 RFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLR 300
           RFSCIALAGVATEYLL+GYAEGGLADINKLD L+KGLGFTQKKADSQVRWS+LNT+L+LR
Sbjct: 236 RFSCIALAGVATEYLLFGYAEGGLADINKLDMLIKGLGFTQKKADSQVRWSVLNTILMLR 295

Query: 301 RHKGARAKLAVAMTMGKSVGSCIDIIEDNIDDTDI 335
           RH+GAR KLA AMTMGKSVGSCI IIEDNID  DI
Sbjct: 296 RHEGAREKLAEAMTMGKSVGSCIGIIEDNIDAADI 330

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487460|gb|ABK95557.1| unknown [Populus trichocarpa]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 268/335 (80%), Positives = 301/335 (89%), Gaps = 5/335 (1%)

Query: 1   MATLIYNNLCLLSSRPRVKVLSLSRIVSSSEVEVSKRRVLKQVDEELSKGDERAALALVK 60
           M T++Y    +    PR+++ S  +IV SS V V +++VL+QVD+ELSKGDERAAL+LVK
Sbjct: 1   MGTVVYYTGLV---PPRLRLCS-KKIVGSS-VGVQRQQVLEQVDKELSKGDERAALSLVK 55

Query: 61  DLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIVG 120
           DLQGKPGGLRCFGA RQIPQRLYTLDELKLNGIETRSLLSPVD TLG+IER LQLA + G
Sbjct: 56  DLQGKPGGLRCFGAGRQIPQRLYTLDELKLNGIETRSLLSPVDATLGAIERTLQLAGVAG 115

Query: 121 GVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQH 180
           G++ WN FGF+PQQIL  SL LLFLWT+DSVS+NGG+GSLVLDTIGHTFSQKYHNRVIQH
Sbjct: 116 GLATWNAFGFSPQQILLFSLGLLFLWTLDSVSFNGGLGSLVLDTIGHTFSQKYHNRVIQH 175

Query: 181 EAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLN 240
           EAGHFLIAY+VGILP+GYTLTS EAL+K+GS NVQAGTAFVDF+FLEEVN+GKVSATTLN
Sbjct: 176 EAGHFLIAYMVGILPRGYTLTSLEALQKDGSFNVQAGTAFVDFDFLEEVNTGKVSATTLN 235

Query: 241 RFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLR 300
           RFSCIALAGVATEYLL+GYAEGGLADINKLD L+KGLGFTQKKADSQVRWS+LNT+L+LR
Sbjct: 236 RFSCIALAGVATEYLLFGYAEGGLADINKLDMLIKGLGFTQKKADSQVRWSVLNTILMLR 295

Query: 301 RHKGARAKLAVAMTMGKSVGSCIDIIEDNIDDTDI 335
           RH+GAR KLA AMTMGKSVGSCI IIEDNID  DI
Sbjct: 296 RHEGAREKLAEAMTMGKSVGSCIGIIEDNIDAADI 330

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542488|ref|XP_002512307.1| conserved hypothetical protein [Ricinus communis] gi|223548268|gb|EEF49759.1| conserved hypothetical protein [Ricinus communis]

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 253/300 (84%), Positives = 281/300 (93%)

Query: 36  KRRVLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIET 95
           +++VL+QVD+EL KGDERAALALV+DLQGKP GL+C+GAARQ+PQRLYTLDELKLNGIE 
Sbjct: 38  RQQVLEQVDKELKKGDERAALALVRDLQGKPAGLKCYGAARQVPQRLYTLDELKLNGIEA 97

Query: 96  RSLLSPVDETLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNG 155
            SLLSPVD TLGSIERNLQL  ++GG++AWN FGF+PQQI Y SL LLFL T+DSVS+NG
Sbjct: 98  ASLLSPVDATLGSIERNLQLCGLLGGIAAWNTFGFSPQQIFYFSLGLLFLLTLDSVSFNG 157

Query: 156 GVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQ 215
           GVGSLVLDTIGHTFSQKYH+RVIQHEAGHFLIAYLVGILPKGYTL+S EAL+KEGSLNVQ
Sbjct: 158 GVGSLVLDTIGHTFSQKYHSRVIQHEAGHFLIAYLVGILPKGYTLSSLEALQKEGSLNVQ 217

Query: 216 AGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLK 275
           AGTAFVDFEFLEEVN+GK+SA +LNRFSCIALAGVATEYLLYG+AEGGLADINKLD LLK
Sbjct: 218 AGTAFVDFEFLEEVNTGKLSAMSLNRFSCIALAGVATEYLLYGFAEGGLADINKLDMLLK 277

Query: 276 GLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAVAMTMGKSVGSCIDIIEDNIDDTDI 335
           GLGFTQKKADSQVRWS+LNT+L+LRRH GARAKLA AM+MGKSVGSCI IIEDNI+D DI
Sbjct: 278 GLGFTQKKADSQVRWSVLNTILILRRHDGARAKLAEAMSMGKSVGSCISIIEDNINDADI 337

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451100|ref|XP_002266105.1| PREDICTED: uncharacterized protein LOC100267587 [Vitis vinifera] gi|298205011|emb|CBI34318.3| unnamed protein product [Vitis vinifera]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 272/335 (81%), Positives = 305/335 (91%), Gaps = 3/335 (0%)

Query: 1   MATLIYNNLCLLSSRPRVKVLSLSRIVSSSEVEVSKRRVLKQVDEELSKGDERAALALVK 60
           M T++Y     + S PR++V +L RIVSS    VS+ +VL+QVD+EL+KGD+R AL+LVK
Sbjct: 1   MGTVVYR--AAVCSHPRLRVPTL-RIVSSLGTNVSRWQVLEQVDKELAKGDDRTALSLVK 57

Query: 61  DLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIVG 120
           DLQGKP GLRCFGAARQ+PQRLYTLDELKLNGIE  SLLSPVD TLGSIERNLQLAA++G
Sbjct: 58  DLQGKPDGLRCFGAARQVPQRLYTLDELKLNGIEASSLLSPVDATLGSIERNLQLAAVLG 117

Query: 121 GVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQH 180
           G+SAWNVFGF+PQQ+L+LSL LLFLWT+D VS+NGGVGSLVLDTIGHTFSQKYHNRVIQH
Sbjct: 118 GLSAWNVFGFSPQQLLFLSLGLLFLWTLDLVSFNGGVGSLVLDTIGHTFSQKYHNRVIQH 177

Query: 181 EAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLN 240
           EAGHFLIAYL+GILPKGYTLTS EAL+KEGSLN+QAGTAFVDFEFLEEVNSGKVSAT LN
Sbjct: 178 EAGHFLIAYLLGILPKGYTLTSLEALQKEGSLNIQAGTAFVDFEFLEEVNSGKVSATMLN 237

Query: 241 RFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLR 300
           RFSCIALAGV TEYLLYGYAEGGLADINKLD LLKGLGFTQKKADSQVRWS+LNTVL+LR
Sbjct: 238 RFSCIALAGVVTEYLLYGYAEGGLADINKLDLLLKGLGFTQKKADSQVRWSVLNTVLILR 297

Query: 301 RHKGARAKLAVAMTMGKSVGSCIDIIEDNIDDTDI 335
           R+K AR KLA AM+MGKSVG+CI +IE+NID+TDI
Sbjct: 298 RNKQARGKLAEAMSMGKSVGACIGVIEENIDNTDI 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124360157|gb|ABN08173.1| Peptidase, cysteine peptidase active site [Medicago truncatula]

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 244/311 (78%), Positives = 282/311 (90%)

Query: 25  RIVSSSEVEVSKRRVLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYT 84
           RI  S++V  S++++L+ VD+EL+KGD+RAALALVKDLQGKP GL+CFGAARQ+PQRLYT
Sbjct: 30  RIQCSTKVSSSRQQLLESVDKELTKGDDRAALALVKDLQGKPNGLQCFGAARQVPQRLYT 89

Query: 85  LDELKLNGIETRSLLSPVDETLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLF 144
           LDELKLNGIE  SLLSPVD TLGSIERNL +AAIVGG +AWNVFG + QQI Y+SL LLF
Sbjct: 90  LDELKLNGIEAMSLLSPVDTTLGSIERNLLIAAIVGGFAAWNVFGISQQQIFYISLGLLF 149

Query: 145 LWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSFE 204
           LWT+D VS+ GG+GSLV+DTIGH FSQKYHNRVIQHEAGHFLIAYLVGILPKGYTL+S +
Sbjct: 150 LWTLDLVSFGGGLGSLVVDTIGHKFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLSSLD 209

Query: 205 ALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGL 264
            + KEGSLN+QAGTAFVDFEFLEEVNSGKVSATTLN+FSCIALAGV TEYL+YG++EGGL
Sbjct: 210 GMMKEGSLNIQAGTAFVDFEFLEEVNSGKVSATTLNKFSCIALAGVCTEYLIYGFSEGGL 269

Query: 265 ADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAVAMTMGKSVGSCID 324
            DI KLD+LL GLGFTQKKADSQVRWS+LNTVLLLRRH+ AR+KLA AM+MG SVGSCID
Sbjct: 270 DDIRKLDSLLNGLGFTQKKADSQVRWSVLNTVLLLRRHEAARSKLAEAMSMGSSVGSCID 329

Query: 325 IIEDNIDDTDI 335
           IIE++I+ +D+
Sbjct: 330 IIENSINVSDL 340

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350537327|ref|NP_001233778.1| stress regulated protein [Solanum lycopersicum] gi|58198163|gb|AAW65813.1| stress regulated protein [Solanum lycopersicum]

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/316 (77%), Positives = 281/316 (88%)

Query: 20  VLSLSRIVSSSEVEVSKRRVLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIP 79
           +L  S + SS+   VS   VL+QVD+EL+KGDERAAL+LVKDLQGKPGGLRCFGAARQ+P
Sbjct: 11  LLCCSELRSSNSRIVSGLSVLEQVDKELTKGDERAALSLVKDLQGKPGGLRCFGAARQVP 70

Query: 80  QRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLS 139
           QRLY+LDELKLNGIE  SLLSPVD TLG+IERNLQ+AAI+ G +AW     +PQQI ++S
Sbjct: 71  QRLYSLDELKLNGIEAISLLSPVDATLGAIERNLQIAAILSGSAAWYALDLSPQQIFFVS 130

Query: 140 LALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYT 199
           L +LFLWT+D VS+NGGVG+LVLDTIGHTFSQKYHNRVIQHEAGHFLIAYL+GILPKGYT
Sbjct: 131 LGVLFLWTLDLVSFNGGVGTLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLLGILPKGYT 190

Query: 200 LTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGY 259
           LTS +ALKKEGSLN+QAGTAFVD EF+EEVN GKV+AT LNRFSCIALAGVATEYLL+GY
Sbjct: 191 LTSLDALKKEGSLNIQAGTAFVDLEFIEEVNRGKVTATMLNRFSCIALAGVATEYLLFGY 250

Query: 260 AEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAVAMTMGKSV 319
           AEGGL+DIN+LDALLK LGFTQKKADSQVRW++LNT+L+LRRH+ AR+KLA AMT GKSV
Sbjct: 251 AEGGLSDINQLDALLKSLGFTQKKADSQVRWAVLNTILILRRHEKARSKLAEAMTQGKSV 310

Query: 320 GSCIDIIEDNIDDTDI 335
           G CIDIIE +I D D+
Sbjct: 311 GVCIDIIEKSISDDDL 326

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815273|emb|CAN70022.1| hypothetical protein VITISV_030170 [Vitis vinifera]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 267/319 (83%), Positives = 297/319 (93%), Gaps = 1/319 (0%)

Query: 17  RVKVLSLSRIVSSSEVEVSKRRVLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAAR 76
           R++V +L RIVSS    VS+ +VL+QVD+EL+KGD+R AL+LVKDLQGKP GLRCFGAAR
Sbjct: 3   RLRVPTL-RIVSSLGTNVSRWQVLEQVDKELAKGDDRTALSLVKDLQGKPDGLRCFGAAR 61

Query: 77  QIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIVGGVSAWNVFGFNPQQIL 136
           Q+PQRLYTLDELKLNGIE  SLLSPVD TLGSIERNLQLAA++GG+SAWNVFGF+PQQ+L
Sbjct: 62  QVPQRLYTLDELKLNGIEASSLLSPVDATLGSIERNLQLAAVLGGLSAWNVFGFSPQQLL 121

Query: 137 YLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPK 196
           +LSL LLFLWT+D VS+NGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYL+GILPK
Sbjct: 122 FLSLGLLFLWTLDLVSFNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLLGILPK 181

Query: 197 GYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLL 256
           GYTLTS EAL+KEGSLN+QAGTAFVDFEFLEEVNSGKVSAT LNRFSCIALAGV TEYLL
Sbjct: 182 GYTLTSLEALQKEGSLNIQAGTAFVDFEFLEEVNSGKVSATMLNRFSCIALAGVVTEYLL 241

Query: 257 YGYAEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAVAMTMG 316
           YGYAEGGLADINKLD LLKGLGFTQKKADSQVRWS+LNTVL+LRR+K AR KLA AM+MG
Sbjct: 242 YGYAEGGLADINKLDLLLKGLGFTQKKADSQVRWSVLNTVLILRRNKQARGKLAEAMSMG 301

Query: 317 KSVGSCIDIIEDNIDDTDI 335
           KSVG+CI +IE+NID+TDI
Sbjct: 302 KSVGACIGVIEENIDNTDI 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512109|ref|XP_003626343.1| hypothetical protein MTR_7g114070 [Medicago truncatula] gi|355501358|gb|AES82561.1| hypothetical protein MTR_7g114070 [Medicago truncatula]

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 244/318 (76%), Positives = 282/318 (88%), Gaps = 7/318 (2%)

Query: 25  RIVSSSEVEVSKRRVLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYT 84
           RI  S++V  S++++L+ VD+EL+KGD+RAALALVKDLQGKP GL+CFGAARQ+PQRLYT
Sbjct: 30  RIQCSTKVSSSRQQLLESVDKELTKGDDRAALALVKDLQGKPNGLQCFGAARQVPQRLYT 89

Query: 85  LDELKLNGIETRSLLSPVDETLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLF 144
           LDELKLNGIE  SLLSPVD TLGSIERNL +AAIVGG +AWNVFG + QQI Y+SL LLF
Sbjct: 90  LDELKLNGIEAMSLLSPVDTTLGSIERNLLIAAIVGGFAAWNVFGISQQQIFYISLGLLF 149

Query: 145 LWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSFE 204
           LWT+D VS+ GG+GSLV+DTIGH FSQKYHNRVIQHEAGHFLIAYLVGILPKGYTL+S +
Sbjct: 150 LWTLDLVSFGGGLGSLVVDTIGHKFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLSSLD 209

Query: 205 ALKKEGSLNVQAGTAFVDFEFLEE-------VNSGKVSATTLNRFSCIALAGVATEYLLY 257
            + KEGSLN+QAGTAFVDFEFLEE       VNSGKVSATTLN+FSCIALAGV TEYL+Y
Sbjct: 210 GMMKEGSLNIQAGTAFVDFEFLEEVGCFICSVNSGKVSATTLNKFSCIALAGVCTEYLIY 269

Query: 258 GYAEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAVAMTMGK 317
           G++EGGL DI KLD+LL GLGFTQKKADSQVRWS+LNTVLLLRRH+ AR+KLA AM+MG 
Sbjct: 270 GFSEGGLDDIRKLDSLLNGLGFTQKKADSQVRWSVLNTVLLLRRHEAARSKLAEAMSMGS 329

Query: 318 SVGSCIDIIEDNIDDTDI 335
           SVGSCIDIIE++I+ +D+
Sbjct: 330 SVGSCIDIIENSINVSDL 347

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|58198153|gb|AAW65807.1| stress regulated protein isoform 3 [Solanum virginianum] gi|58198161|gb|AAW65812.1| stress regulated protein isoform 3 [Solanum virginianum]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 242/316 (76%), Positives = 282/316 (89%)

Query: 20  VLSLSRIVSSSEVEVSKRRVLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIP 79
           +L  S++ SS+   +S   VL+QVD+EL KGDERAAL+LVKDL+GKPGGLRCFGAARQ+P
Sbjct: 11  LLCCSQLRSSNSRILSGLSVLEQVDKELMKGDERAALSLVKDLRGKPGGLRCFGAARQVP 70

Query: 80  QRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLS 139
           QRLY+LDEL+LNGIET SLLSPVD TLG+IERNLQ+ AI+ G +AW     +PQQIL++S
Sbjct: 71  QRLYSLDELRLNGIETVSLLSPVDATLGAIERNLQIVAILSGSAAWYALDLSPQQILFVS 130

Query: 140 LALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYT 199
           L +LFLWT+D VS+NGGVG+LVLDTIGHTFSQKYHNRV QHEAGHFLIAYL+GILPKGYT
Sbjct: 131 LGVLFLWTLDLVSFNGGVGALVLDTIGHTFSQKYHNRVTQHEAGHFLIAYLLGILPKGYT 190

Query: 200 LTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGY 259
           LTS +ALKK+GSLN+QAGTAFVDFEF+EEVNSGKV+AT LNRFSCIALAGVATEYLL+GY
Sbjct: 191 LTSLDALKKQGSLNIQAGTAFVDFEFIEEVNSGKVTATMLNRFSCIALAGVATEYLLFGY 250

Query: 260 AEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAVAMTMGKSV 319
           AEGGL+DIN+LDALLK LGFTQKKADSQVRW++LNT+L+LRRH+ AR KLA AMT GKSV
Sbjct: 251 AEGGLSDINQLDALLKSLGFTQKKADSQVRWAVLNTILILRRHEKARVKLAEAMTRGKSV 310

Query: 320 GSCIDIIEDNIDDTDI 335
           G CIDIIE +I + D+
Sbjct: 311 GVCIDIIEKSISEDDL 326

Source: Solanum virginianum

Species: Solanum virginianum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808789|ref|XP_002872278.1| hypothetical protein ARALYDRAFT_910860 [Arabidopsis lyrata subsp. lyrata] gi|297318115|gb|EFH48537.1| hypothetical protein ARALYDRAFT_910860 [Arabidopsis lyrata subsp. lyrata]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 239/311 (76%), Positives = 277/311 (89%), Gaps = 1/311 (0%)

Query: 26  IVSSSEVEVSKRR-VLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYT 84
           IV SSE  +S RR VL+QVD +LS GDERAAL+LV+DLQGKP GLRCFGAARQ+PQRLY+
Sbjct: 31  IVCSSETALSTRRQVLEQVDSKLSSGDERAALSLVRDLQGKPDGLRCFGAARQVPQRLYS 90

Query: 85  LDELKLNGIETRSLLSPVDETLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLF 144
           L+ELKLNGI   SLLSP D TLGSIERNLQ+A + GG+ AW  F  + QQ+L+LSL  +F
Sbjct: 91  LEELKLNGINAASLLSPTDATLGSIERNLQIAGVSGGIVAWKAFDLSSQQLLFLSLGFMF 150

Query: 145 LWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSFE 204
           LWT+D VS+NGG+ SLVLDTIGHTFSQ+YHNRV+QHEAGHFL+AYLVGILP+GYTL+S E
Sbjct: 151 LWTLDLVSFNGGIASLVLDTIGHTFSQRYHNRVVQHEAGHFLVAYLVGILPRGYTLSSLE 210

Query: 205 ALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGL 264
           AL+KEGSLN+QAG+AFVD+EFLEEVNSGKVSAT LNRFSCIALAGVATEYLLYGYAEGGL
Sbjct: 211 ALQKEGSLNIQAGSAFVDYEFLEEVNSGKVSATMLNRFSCIALAGVATEYLLYGYAEGGL 270

Query: 265 ADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAVAMTMGKSVGSCID 324
            DI+KLD L+K LGFTQKKADSQVRWS+LNT+LLLRRH+ AR+KLA AM+ G+SVGSCI+
Sbjct: 271 DDISKLDGLVKSLGFTQKKADSQVRWSVLNTILLLRRHEIARSKLAQAMSKGESVGSCIE 330

Query: 325 IIEDNIDDTDI 335
           IIED+ID +DI
Sbjct: 331 IIEDSIDPSDI 341

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
TAIR|locus:2181221	341	AT5G27290 [Arabidopsis thalian	0.844	0.829	0.784	2.3e-119
TAIR|locus:2199471	223	AT1G54680 "AT1G54680" [Arabido	0.432	0.650	0.422	5.4e-31
TAIR|locus:2011861	389	AT1G56180 "AT1G56180" [Arabido	0.632	0.544	0.328	5.2e-20
TAIR|locus:2052474	332	AT2G21960 [Arabidopsis thalian	0.791	0.798	0.262	2e-13

TAIR|locus:2181221 AT5G27290 [Arabidopsis thaliana (taxid:3702)]

 Score = 1175 (418.7 bits), Expect = 2.3e-119, P = 2.3e-119
 Identities = 222/283 (78%), Positives = 255/283 (90%)

Query:    40 LKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETRSLL 99
             L+QVD +LS GDERAAL+LVKDLQGKP GLRCFGAARQ+PQRLYTL+ELKLNGI   SLL
Sbjct:    46 LEQVDSKLSSGDERAALSLVKDLQGKPDGLRCFGAARQVPQRLYTLEELKLNGINAASLL 105

Query:   100 SPVDETLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGS 159
             SP D TLGSIERNLQ+AA+ GG+ AW  F  + QQ+ +L+L  +FLWT+D VS+NGG+GS
Sbjct:   106 SPTDTTLGSIERNLQIAAVSGGIVAWKAFDLSSQQLFFLTLGFMFLWTLDLVSFNGGIGS 165

Query:   160 LVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQAGTA 219
             LVLDT GHTFSQ+YHNRV+QHEAGHFL+AYLVGILP+GYTL+S EAL+KEGSLN+QAG+A
Sbjct:   166 LVLDTTGHTFSQRYHNRVVQHEAGHFLVAYLVGILPRGYTLSSLEALQKEGSLNIQAGSA 225

Query:   220 FVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGF 279
             FVD+EFLEEVNSGKVSAT LNRFSCIALAGVATEYLLYGYAEGGL DI+KLD L+K LGF
Sbjct:   226 FVDYEFLEEVNSGKVSATMLNRFSCIALAGVATEYLLYGYAEGGLDDISKLDGLVKSLGF 285

Query:   280 TQKKADSQVRWSLLNTVLLLRRHKGARAKLAVAMTMGKSVGSC 322
             TQKKADSQVRWS+LNT+LLLRRH+ AR+KLA AM+ G+SVGSC
Sbjct:   286 TQKKADSQVRWSVLNTILLLRRHEIARSKLAQAMSKGESVGSC 328

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2199471 AT1G54680 "AT1G54680" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 68/161 (42%), Positives = 103/161 (63%)

Query:   177 VIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEV------- 229
             V+QHE+GHFL+ YL+G+LP+ Y + + EA+++  S NV     FV FEFL++V       
Sbjct:    51 VVQHESGHFLVGYLLGVLPRHYEIPTLEAVRQNVS-NVTGRVEFVGFEFLKQVGAANQLM 109

Query:   230 --------NSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFTQ 281
                     N G +S+ TLN FSC+ L G+ TE++L+GY+EG  +DI KL+ +L+ LGFT+
Sbjct:   110 KDDVDGQMNQGNISSKTLNNFSCVILGGMVTEHILFGYSEGLYSDIVKLNDVLRWLGFTE 169

Query:   282 KKADSQVRWSLLNTVLLLRRHKGARAKLAVAMTMGKSVGSC 322
              + ++ ++W++ NTV LL  HK AR  LA  M   K + +C
Sbjct:   170 SEKEAHIKWAVSNTVSLLHSHKEARVSLAETMAKAKPISTC 210

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2011861 AT1G56180 "AT1G56180" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 5.2e-20, P = 5.2e-20
 Identities = 75/228 (32%), Positives = 117/228 (51%)

Query:    92 GIETRSLLSPVDETLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSV 151
             G+E   L SP    L     ++ LAA++GGVS       + +  L + L L +L   DSV
Sbjct:   157 GLEVTKL-SPKKWGLSG-GSSIALAALLGGVSYLLSQEIDVRPNLAVILGLAYL---DSV 211

Query:   152 SYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGS 211
              + GG     L  +   +   +  R++ HEAGH L+AYL+G   +G  L    A++    
Sbjct:   212 -FLGGT---CLAQVS-CYWPPHKRRIVVHEAGHLLVAYLMGCPIRGVILDPVVAMQM--G 264

Query:   212 LNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADIN--- 268
             +  QAGT F D +   E+  G++S ++ +R+S +  AG+A E L+YG AEGG  D N   
Sbjct:   265 VQGQAGTQFWDQKMESEIAEGRLSGSSFDRYSMVLFAGIAAEALVYGEAEGGENDENLFR 324

Query:   269 KLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAVAMTMG 316
              +  LL+    +  +  +Q RWS+L +  LL+ HK A      A+ +G
Sbjct:   325 SISVLLEP-PLSVAQMSNQARWSVLQSYNLLKWHKAAHRAAVEALQVG 371

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2052474 AT2G21960 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.0e-13, P = 2.0e-13
 Identities = 76/290 (26%), Positives = 133/290 (45%)

Query:    40 LKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGI---ETR 96
             L  ++  ++K D       +  L  + G  + + +   + +R  +L EL   GI   ET 
Sbjct:    53 LSSLESAINKKDSNGVKEALDKLS-EEGWAKKWSSQPYLSRRTTSLRELTTLGIKNAETL 111

Query:    97 SLLSPVDET--LGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYN 154
             ++ S  ++   L ++  +    A++ G    +   F P  +  +SL +L    V SVS  
Sbjct:   112 AIPSVRNDAAFLFTVVGSTGFIAVLAGQLPGDWGFFVPYLVGSISLVVL---AVGSVS-- 166

Query:   155 GGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNV 214
              G+    +     TF   Y  R+  HEA HFL+AYL+G+   GY+L     + KE  +N+
Sbjct:   167 PGLLQAAISGFS-TFFPDYQERIAAHEAAHFLVAYLIGLPILGYSLD----IGKE-HVNL 220

Query:   215 QAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALL 274
                   +D    + + SGK+ +  L+R + +A+AG+A E L Y    G  AD+  L   +
Sbjct:   221 ------IDERLAKLIYSGKLDSKELDRLAAVAMAGLAAEGLKYDKVIGQSADLFSLQRFI 274

Query:   275 KGLG--FTQKKADSQVRWSLLNTVLLLRRHKGARAKLAVAMTMGKSVGSC 322
                    + ++  +  RW++L +  LL+ +K     L  AM+   SV  C
Sbjct:   275 NRSQPKISNEQQQNLTRWAVLYSASLLKNNKTIHEALMAAMSKNASVLEC 324


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      335       299   0.00095  115 3  11 22  0.38    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  191 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.99u 0.25s 21.24t   Elapsed:  00:00:01
  Total cpu time:  20.99u 0.25s 21.24t   Elapsed:  00:00:01
  Start:  Fri May 10 09:06:49 2013   End:  Fri May 10 09:06:50 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XIII.1190.1	SubName- Full=Putative uncharacterized protein; (300 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00130190	SubName- Full=Putative uncharacterized protein; (339 aa)			•	•					0.597
	eugene3.00170453	hypothetical protein (457 aa)	•		•	•					0.560
	gw1.I.6006.1	hypothetical protein (200 aa)			•	•					0.538
	gw1.VI.751.1	hypothetical protein (249 aa)			•	•					0.535
	grail3.0038021201	SubName- Full=Putative uncharacterized protein; (182 aa)			•	•					0.516
	grail3.0012022801	hypothetical protein (255 aa)			•	•					0.512
	gw1.XVIII.1253.1	annotation not avaliable (470 aa)			•						0.506
	gw1.VI.134.1	annotation not avaliable (299 aa)			•						0.506
	fgenesh4_pg.C_LG_III001848	hypothetical protein (302 aa)			•						0.505
	eugene3.00120287	hypothetical protein (135 aa)			•						0.504

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	335
PF01434	213	Peptidase_M41: Peptidase family M41 This is family	99.97
CHL00176	638	ftsH cell division protein; Validated	99.96
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.95
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	99.95
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.95
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.94
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	99.92
CHL00206	2281	ycf2 Ycf2; Provisional	99.1
cd06163	182	S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (	97.16
cd06164	227	S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P),	96.68
cd06161	208	S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a z	96.45
PRK10779	449	zinc metallopeptidase RseP; Provisional	96.37
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	96.26
cd05709	180	S2P-M50 Site-2 protease (S2P) class of zinc metall	95.86
PF02163	192	Peptidase_M50: Peptidase family M50; InterPro: IPR	95.77
PF13398	200	Peptidase_M50B: Peptidase M50B-like	95.54
cd06162	277	S2P-M50_PDZ_SREBP Sterol regulatory element-bindin	94.85
cd06158	181	S2P-M50_like_1 Uncharacterized homologs of Site-2	94.53
cd06160	183	S2P-M50_like_2 Uncharacterized homologs of Site-2	93.07
cd06159	263	S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs	91.73
PF14247	220	DUF4344: Domain of unknown function (DUF4344)	81.41
PF00413	154	Peptidase_M10: Matrixin This Prosite motif covers	81.09

>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification

Probab=99.97  E-value=1.6e-29  Score=231.94  Aligned_cols=154  Identities=23%  Similarity=0.303  Sum_probs=121.7

Q ss_pred             HHHHHHhhcCCCCccccccccCCCCHhHHHHHHHHHHhHHHHHHHhC--CCCceeeecchhhhhhcCccccccceeeecc
Q 019829          146 WTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVG--ILPKGYTLTSFEALKKEGSLNVQAGTAFVDF  223 (335)
Q Consensus       146 ~aiD~V~lGg~~~~lvld~~~~~~s~~~r~RIA~HEAGHaLVAyllg--~PV~~~TI~preal~~~G~~~~~gG~~f~~~  223 (335)
                      -++|+|++|.+...       +.+++++|+|+||||||||+|+|+++  .||.++||+|+      |  + .+|++...+
T Consensus         7 ~a~drv~~G~~~~~-------~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~pr------g--~-~~G~~~~~~   70 (213)
T PF01434_consen    7 EAIDRVLMGPEKKS-------RKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPR------G--S-ALGFTQFTP   70 (213)
T ss_dssp             HHHHHHHCCSCCTT-------S---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTT------C--C-CCHCCEECH
T ss_pred             HHHHHHhcCcCcCC-------CCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecC------C--C-cceeEEecc
Confidence            48999999988532       23589999999999999999999998  58999999997      5  3 455554443


Q ss_pred             hhhhhhccccCCHHHHHHHHHHHchhHHHHHHHhC--C-ccchhhHHHHHHHHHHh----cCCCH---------------
Q 019829          224 EFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYG--Y-AEGGLADINKLDALLKG----LGFTQ---------------  281 (335)
Q Consensus       224 ~~~~~~~~g~~t~~~L~r~i~VlLAGrAAE~lvyG--~-atGg~~Dl~qat~i~~~----lG~s~---------------  281 (335)
                      ..    +.+..|++++.+.++|+|||||||+++||  + ++|+++|++++++++..    +||+.               
T Consensus        71 ~~----~~~~~t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~  146 (213)
T PF01434_consen   71 DE----DRYIRTRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEV  146 (213)
T ss_dssp             HT----T-SS-BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-S
T ss_pred             ch----hcccccHHHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccccccc
Confidence            32    23458999999999999999999999999  5 56999999999999864    56532               


Q ss_pred             -----------------HHHHHHHH----HHHHHHHHHHHHcHHHHHHHHHHHHcccch
Q 019829          282 -----------------KKADSQVR----WSLLNTVLLLRRHKGARAKLAVAMTMGKSV  319 (335)
Q Consensus       282 -----------------~~id~evR----~A~~~A~~LL~~~r~aleaLaeaLl~~esl  319 (335)
                                       ..++.+++    .+|.+|+.+|++|++.+++|+++|+++++|
T Consensus       147 ~~~~~~~~~~~~s~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L  205 (213)
T PF01434_consen  147 FLGREWNSRRPMSEETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETL  205 (213)
T ss_dssp             SS-E---EEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEE
T ss_pred             cccccccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCee
Confidence                             12344444    589999999999999999999999999998

; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....

>CHL00176 ftsH cell division protein; Validated

Probab=99.96  E-value=2.5e-28  Score=255.55  Aligned_cols=188  Identities=18%  Similarity=0.211  Sum_probs=152.0

Q ss_pred             hhhhHHHHHHHHHHhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCCCCccccccccCCCCHhHHHHHHHHHHhHH
Q 019829          106 LGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHF  185 (335)
Q Consensus       106 l~sv~n~~a~~a~~g~~~~~~~~~l~~~~~~~~~~~~l~~~aiD~V~lGg~~~~lvld~~~~~~s~~~r~RIA~HEAGHa  185 (335)
                      |..+.|++++.+.+.+...+..-++.              .++|++++|.+..++        .++++|++|||||||||
T Consensus       392 L~~lvneAal~a~r~~~~~It~~dl~--------------~Ai~rv~~g~~~~~~--------~~~~~~~~vA~hEaGhA  449 (638)
T CHL00176        392 LANLLNEAAILTARRKKATITMKEID--------------TAIDRVIAGLEGTPL--------EDSKNKRLIAYHEVGHA  449 (638)
T ss_pred             HHHHHHHHHHHHHHhCCCCcCHHHHH--------------HHHHHHHhhhccCcc--------ccHHHHHHHHHHhhhhH
Confidence            67777888887777665544433333              389999999775543        37899999999999999


Q ss_pred             HHHHHhC--CCCceeeecchhhhhhcCccccccceeeecchhhhhhccccCCHHHHHHHHHHHchhHHHHHHHhCC---c
Q 019829          186 LIAYLVG--ILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGY---A  260 (335)
Q Consensus       186 LVAyllg--~PV~~~TI~preal~~~G~~~~~gG~~f~~~~~~~~~~~g~~t~~~L~r~i~VlLAGrAAE~lvyG~---a  260 (335)
                      +|+++++  .||+++||+||      |   ..+|+++..|+.    +.+.+|+.++..+++++|||||||+++||+   +
T Consensus       450 ~v~~~l~~~~~v~kvtI~pr------g---~~~G~~~~~p~~----~~~~~t~~~l~~~i~~~LgGraAE~~~fg~~~~~  516 (638)
T CHL00176        450 IVGTLLPNHDPVQKVTLIPR------G---QAKGLTWFTPEE----DQSLVSRSQILARIVGALGGRAAEEVVFGSTEVT  516 (638)
T ss_pred             HHHhhccCCCceEEEEEeec------C---CCCCceEecCCc----ccccccHHHHHHHHHHHhhhHHHHHHhcCCCCcC
Confidence            9999987  68999999998      5   356777665542    346789999999999999999999999994   4


Q ss_pred             cchhhHHHHHHHHHHh----cCCC----------------------------H---HHHHHHHH----HHHHHHHHHHHH
Q 019829          261 EGGLADINKLDALLKG----LGFT----------------------------Q---KKADSQVR----WSLLNTVLLLRR  301 (335)
Q Consensus       261 tGg~~Dl~qat~i~~~----lG~s----------------------------~---~~id~evR----~A~~~A~~LL~~  301 (335)
                      +|+++|++++|++++.    +||+                            +   ..+|.+++    .||.+|+.+|++
T Consensus       517 ~Ga~~Dl~~AT~iA~~mv~~~Gm~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~iD~ev~~~l~~~~~~a~~iL~~  596 (638)
T CHL00176        517 TGASNDLQQVTNLARQMVTRFGMSSIGPISLESNNSTDPFLGRFMQRNSEYSEEIADKIDMEVRSILHTCYQYAYQILKD  596 (638)
T ss_pred             CCchhHHHHHHHHHHHHHHHhCCCcCCceeecCCCCcccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999864    5653                            0   13566655    699999999999


Q ss_pred             cHHHHHHHHHHHHcccch--HHHHHHHHh
Q 019829          302 HKGARAKLAVAMTMGKSV--GSCIDIIED  328 (335)
Q Consensus       302 ~r~aleaLaeaLl~~esl--~~ci~~Ie~  328 (335)
                      |++.++++|++|+++|||  +|+.++++.
T Consensus       597 ~~~~l~~la~~Lle~Etl~~~ei~~il~~  625 (638)
T CHL00176        597 NRVLIDLLVELLLQKETIDGDEFREIVNS  625 (638)
T ss_pred             hHHHHHHHHHHHHHhCccCHHHHHHHHhh
Confidence            999999999999999999  677788865

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.95  E-value=6.1e-28  Score=252.90  Aligned_cols=190  Identities=20%  Similarity=0.231  Sum_probs=153.0

Q ss_pred             hhhhhHHHHHHHHHHhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCCCCccccccccCCCCHhHHHHHHHHHHhH
Q 019829          105 TLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGH  184 (335)
Q Consensus       105 ~l~sv~n~~a~~a~~g~~~~~~~~~l~~~~~~~~~~~~l~~~aiD~V~lGg~~~~lvld~~~~~~s~~~r~RIA~HEAGH  184 (335)
                      -|..+.|++++.|.+.+-..+...++..              ++|++.+|.....       ..+++++|+++|||||||
T Consensus       360 dl~~l~~eAa~~a~r~~~~~i~~~d~~~--------------a~~~v~~g~~~~~-------~~~~~~~~~~~a~he~gh  418 (644)
T PRK10733        360 DLANLVNEAALFAARGNKRVVSMVEFEK--------------AKDKIMMGAERRS-------MVMTEAQKESTAYHEAGH  418 (644)
T ss_pred             HHHHHHHHHHHHHHHcCCCcccHHHHHH--------------HHHHHhccccccc-------ccccHHHHHHHHHHHHHH
Confidence            4667788999988888776555544444              8999999876432       235789999999999999


Q ss_pred             HHHHHHhC--CCCceeeecchhhhhhcCccccccceeeecchhhhhhccccCCHHHHHHHHHHHchhHHHHHHHhCC---
Q 019829          185 FLIAYLVG--ILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGY---  259 (335)
Q Consensus       185 aLVAyllg--~PV~~~TI~preal~~~G~~~~~gG~~f~~~~~~~~~~~g~~t~~~L~r~i~VlLAGrAAE~lvyG~---  259 (335)
                      |+|+++++  .||+++||+||      |   ..+|+++..|+.    +....|+++|+++++|+|||||||+++||.   
T Consensus       419 a~~~~~~~~~~~~~~v~i~pr------g---~~~g~~~~~~~~----~~~~~~~~~l~~~i~~~lgGraAE~~~~g~~~~  485 (644)
T PRK10733        419 AIIGRLVPEHDPVHKVTIIPR------G---RALGVTFFLPEG----DAISASRQKLESQISTLYGGRLAEEIIYGPEHV  485 (644)
T ss_pred             HHHHHHccCCCceeEEEEecc------C---CCcceeEECCCc----ccccccHHHHHHHHHHHHhhHHHHHHHhCCCCC
Confidence            99999997  68999999998      5   356776665542    234579999999999999999999999994   


Q ss_pred             ccchhhHHHHHHHHHHh----cCCCH-------------------------------HHHHHHHH----HHHHHHHHHHH
Q 019829          260 AEGGLADINKLDALLKG----LGFTQ-------------------------------KKADSQVR----WSLLNTVLLLR  300 (335)
Q Consensus       260 atGg~~Dl~qat~i~~~----lG~s~-------------------------------~~id~evR----~A~~~A~~LL~  300 (335)
                      ++|+++|++++|++++.    +|||.                               ..+|++++    .||.+|+++|+
T Consensus       486 ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~~~~~~s~~~~~~id~ev~~il~~~~~~a~~iL~  565 (644)
T PRK10733        486 STGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLT  565 (644)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHhCCCccccchhhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999998864    57642                               13566665    69999999999


Q ss_pred             HcHHHHHHHHHHHHcccch--HHHHHHHHh
Q 019829          301 RHKGARAKLAVAMTMGKSV--GSCIDIIED  328 (335)
Q Consensus       301 ~~r~aleaLaeaLl~~esl--~~ci~~Ie~  328 (335)
                      +|++.+++||++|+++|||  ++..+++..
T Consensus       566 ~~~~~l~~la~~Lle~etl~~~ei~~i~~~  595 (644)
T PRK10733        566 DNMDILHAMKDALMKYETIDAPQIDDLMAR  595 (644)
T ss_pred             HhHHHHHHHHHHHHHhceeCHHHHHHHHhc
Confidence            9999999999999999999  566677764

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=9e-29  Score=250.59  Aligned_cols=217  Identities=18%  Similarity=0.227  Sum_probs=173.3

Q ss_pred             CCCccccC--hhHHh--hhccccccCCCCc----------cchhhhhHHHHHHHHHHhhhhhhhhcCCChhHHHHHHHHH
Q 019829           77 QIPQRLYT--LDELK--LNGIETRSLLSPV----------DETLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLAL  142 (335)
Q Consensus        77 ~vp~r~~~--~~elk--~~gi~~~~~lsp~----------~~~l~sv~n~~a~~a~~g~~~~~~~~~l~~~~~~~~~~~~  142 (335)
                      .||.-++.  .+=|+  +++|.-.+..-|+          ..-|+++-|.+|+-|-+.|.....+-||..          
T Consensus       467 ~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~----------  536 (752)
T KOG0734|consen  467 TVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEF----------  536 (752)
T ss_pred             ecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhh----------
Confidence            45655554  23344  4666555433332          233778889999988888887777777774          


Q ss_pred             HHHHHHHHHhhcCCCCccccccccCCCCHhHHHHHHHHHHhHHHHHHHhC--CCCceeeecchhhhhhcCccccccceee
Q 019829          143 LFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVG--ILPKGYTLTSFEALKKEGSLNVQAGTAF  220 (335)
Q Consensus       143 l~~~aiD~V~lGg~~~~lvld~~~~~~s~~~r~RIA~HEAGHaLVAyllg--~PV~~~TI~preal~~~G~~~~~gG~~f  220 (335)
                          +-|+|+||.++.+.+       ++++.|+..||||+|||+||+...  .|++|.||.||      |   -..|.++
T Consensus       537 ----akDrIlMG~ERks~~-------i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPR------G---~sLG~t~  596 (752)
T KOG0734|consen  537 ----AKDRILMGPERKSMV-------IDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPR------G---PSLGHTS  596 (752)
T ss_pred             ----hhhheeecccccccc-------cChhhhhhhhhhccCceEEEeecCCCccccceeeccC------C---cccccee
Confidence                999999999977665       579999999999999999999986  69999999998      6   2456777


Q ss_pred             ecchhhhhhccccCCHHHHHHHHHHHchhHHHHHHHhCC--c-cchhhHHHHHHHHHHh----cCCCH------------
Q 019829          221 VDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGY--A-EGGLADINKLDALLKG----LGFTQ------------  281 (335)
Q Consensus       221 ~~~~~~~~~~~g~~t~~~L~r~i~VlLAGrAAE~lvyG~--a-tGg~~Dl~qat~i~~~----lG~s~------------  281 (335)
                      ..|+.    |++..|+.++..++-|+||||+||+|+||.  + +|+++|++|+|++++.    +|||.            
T Consensus       597 ~LPe~----D~~~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~  672 (752)
T KOG0734|consen  597 QLPEK----DRYSITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDN  672 (752)
T ss_pred             ecCcc----chhhHHHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCC
Confidence            66653    568899999999999999999999999997  3 5999999999998764    68753            


Q ss_pred             ---------HHHHHHHH----HHHHHHHHHHHHcHHHHHHHHHHHHcccch--HHHHHHHH
Q 019829          282 ---------KKADSQVR----WSLLNTVLLLRRHKGARAKLAVAMTMGKSV--GSCIDIIE  327 (335)
Q Consensus       282 ---------~~id~evR----~A~~~A~~LL~~~r~aleaLaeaLl~~esl--~~ci~~Ie  327 (335)
                               ..+|.|++    .+|+||+.||+.|...+++||+||++.|||  +|..++++
T Consensus       673 ~~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~  733 (752)
T KOG0734|consen  673 SSSLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLK  733 (752)
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHh
Confidence                     14777765    589999999999999999999999999999  55556664

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=6.7e-28  Score=249.07  Aligned_cols=191  Identities=21%  Similarity=0.211  Sum_probs=164.2

Q ss_pred             chhhhhHHHHHHHHHHhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCCCCccccccccCCCCHhHHHHHHHHHHh
Q 019829          104 ETLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAG  183 (335)
Q Consensus       104 ~~l~sv~n~~a~~a~~g~~~~~~~~~l~~~~~~~~~~~~l~~~aiD~V~lGg~~~~lvld~~~~~~s~~~r~RIA~HEAG  183 (335)
                      ..|..+-|++|++|.+-+-..+.+.+++.              ++|+|++|.+..+.       ++++++|+-+||||||
T Consensus       357 AdL~nl~NEAal~aar~n~~~i~~~~i~e--------------a~drv~~G~erks~-------vise~ek~~~AYhEag  415 (596)
T COG0465         357 ADLANLLNEAALLAARRNKKEITMRDIEE--------------AIDRVIAGPERKSR-------VISEAEKKITAYHEAG  415 (596)
T ss_pred             chHhhhHHHHHHHHHHhcCeeEeccchHH--------------HHHHHhcCcCcCCc-------ccChhhhcchHHHHHH
Confidence            45778889999999999999999999998              99999999996654       4699999999999999


Q ss_pred             HHHHHHHhC--CCCceeeecchhhhhhcCccccccceeeecchhhhhhccccCCHHHHHHHHHHHchhHHHHHHHhC-Cc
Q 019829          184 HFLIAYLVG--ILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYG-YA  260 (335)
Q Consensus       184 HaLVAyllg--~PV~~~TI~preal~~~G~~~~~gG~~f~~~~~~~~~~~g~~t~~~L~r~i~VlLAGrAAE~lvyG-~a  260 (335)
                      |++|+++++  +||+|+||+||      |   ..+|+++..|+.    |++.+|++++.++++++|||||||+++|| +.
T Consensus       416 halv~~~l~~~d~v~KvtIiPr------G---~alG~t~~~Pe~----d~~l~sk~~l~~~i~~~lgGRaAEel~~g~e~  482 (596)
T COG0465         416 HALVGLLLPDADPVHKVTIIPR------G---RALGYTLFLPEE----DKYLMSKEELLDRIDVLLGGRAAEELIFGYEI  482 (596)
T ss_pred             HHHHHHhCCCCcccceeeeccC------c---hhhcchhcCCcc----ccccccHHHHHHHHHHHhCCcHhhhhhhcccc
Confidence            999999997  59999999998      5   467888777653    57899999999999999999999999999 75


Q ss_pred             -cchhhHHHHHHHHHHh----cCCCH-----------------------------HHHHHHHH----HHHHHHHHHHHHc
Q 019829          261 -EGGLADINKLDALLKG----LGFTQ-----------------------------KKADSQVR----WSLLNTVLLLRRH  302 (335)
Q Consensus       261 -tGg~~Dl~qat~i~~~----lG~s~-----------------------------~~id~evR----~A~~~A~~LL~~~  302 (335)
                       +|++||++++|.+++.    +|||.                             ..||.+++    .+|.+++.+|.+|
T Consensus       483 ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~ID~evk~ii~~~y~~a~~il~~~  562 (596)
T COG0465         483 TTGASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVEGVFLGRYQKAKNYSEETAQEIDREVKDIIDEAYERAKELLNEN  562 (596)
T ss_pred             cccchhhHHHHHHHHHHhhhhcCcchhhCceehhhcccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             6999999999998764    56652                             24677766    5999999999999


Q ss_pred             HHHHHHHHHHHHcccch--HHHHHHHHh
Q 019829          303 KGARAKLAVAMTMGKSV--GSCIDIIED  328 (335)
Q Consensus       303 r~aleaLaeaLl~~esl--~~ci~~Ie~  328 (335)
                      ++.++.++++|+++||+  ++..++++.
T Consensus       563 ~~~l~~~~~~Lle~Eti~~~~i~~i~~~  590 (596)
T COG0465         563 KDALETLAEMLLEKETIDAEEIKDILAG  590 (596)
T ss_pred             HHHHHHHHHHHHHhhccCHHHHHHHHhc
Confidence            99999999999999998  333344443

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.94  E-value=1.3e-26  Score=235.49  Aligned_cols=187  Identities=19%  Similarity=0.211  Sum_probs=141.3

Q ss_pred             hhhhHHHHHHHHHHhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCCCCccccccccCCCCHhHHHHHHHHHHhHH
Q 019829          106 LGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHF  185 (335)
Q Consensus       106 l~sv~n~~a~~a~~g~~~~~~~~~l~~~~~~~~~~~~l~~~aiD~V~lGg~~~~lvld~~~~~~s~~~r~RIA~HEAGHa  185 (335)
                      |..+.|++++.+.+.+-..+..-+              +..+++++.+|.....       ..+++++++|+||||||||
T Consensus       264 l~~l~~eA~~~a~~~~~~~i~~~~--------------l~~a~~~~~~~~~~~~-------~~~~~~~~~~~A~hEaGhA  322 (495)
T TIGR01241       264 LANLLNEAALLAARKNKTEITMND--------------IEEAIDRVIAGPEKKS-------RVISEKEKKLVAYHEAGHA  322 (495)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCHHH--------------HHHHHHHHhccccccc-------ccccHHHHHHHHHHHHhHH
Confidence            445556666655554433222222              2347899999876332       2358999999999999999


Q ss_pred             HHHHHhC--CCCceeeecchhhhhhcCccccccceeeecchhhhhhccccCCHHHHHHHHHHHchhHHHHHHHhCCc-cc
Q 019829          186 LIAYLVG--ILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYA-EG  262 (335)
Q Consensus       186 LVAyllg--~PV~~~TI~preal~~~G~~~~~gG~~f~~~~~~~~~~~g~~t~~~L~r~i~VlLAGrAAE~lvyG~a-tG  262 (335)
                      ||+|+++  .||.++||.||      |  + .+|+++..+..    +.+..|+++++++++|+|||||||+++||++ +|
T Consensus       323 lv~~~l~~~~~v~~vsi~pr------g--~-~~G~~~~~~~~----~~~~~t~~~l~~~i~v~LaGraAE~~~~G~~s~G  389 (495)
T TIGR01241       323 LVGLLLKDADPVHKVTIIPR------G--Q-ALGYTQFLPEE----DKYLYTKSQLLAQIAVLLGGRAAEEIIFGEVTTG  389 (495)
T ss_pred             HHHHhcCCCCceEEEEEeec------C--C-ccceEEecCcc----ccccCCHHHHHHHHHHHhhHHHHHHHHhcCCCCC
Confidence            9999995  68999999998      5  2 55655543321    3467899999999999999999999999996 59


Q ss_pred             hhhHHHHHHHHHHh----cCCCH-------------------------------HHHHHHH----HHHHHHHHHHHHHcH
Q 019829          263 GLADINKLDALLKG----LGFTQ-------------------------------KKADSQV----RWSLLNTVLLLRRHK  303 (335)
Q Consensus       263 g~~Dl~qat~i~~~----lG~s~-------------------------------~~id~ev----R~A~~~A~~LL~~~r  303 (335)
                      +++|++++++++..    +||+.                               ..++.++    ++++.+|+++|++|+
T Consensus       390 a~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~id~~v~~lL~~a~~ra~~lL~~~~  469 (495)
T TIGR01241       390 ASNDIKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFLGRGFAKAKEYSEETAREIDEEVKRIIEEAYKRAKQILTENR  469 (495)
T ss_pred             chHHHHHHHHHHHHHHHHhCCCcccCceeeccCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            99999999999753    56542                               1234444    489999999999999


Q ss_pred             HHHHHHHHHHHcccch--HHHHHHH
Q 019829          304 GARAKLAVAMTMGKSV--GSCIDII  326 (335)
Q Consensus       304 ~aleaLaeaLl~~esl--~~ci~~I  326 (335)
                      ++++++|++|+++++|  +|..++|
T Consensus       470 ~~l~~la~~Ll~~e~L~~~ei~~il  494 (495)
T TIGR01241       470 DELELLAKALLEKETITREEIKELL  494 (495)
T ss_pred             HHHHHHHHHHHHcCeeCHHHHHHHh
Confidence            9999999999999998  4444444

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.8e-25  Score=233.87  Aligned_cols=188  Identities=21%  Similarity=0.252  Sum_probs=159.9

Q ss_pred             hhhhHHHHHHHHHHhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCCCCccccccccCCCCHhHHHHHHHHHHhHH
Q 019829          106 LGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHF  185 (335)
Q Consensus       106 l~sv~n~~a~~a~~g~~~~~~~~~l~~~~~~~~~~~~l~~~aiD~V~lGg~~~~lvld~~~~~~s~~~r~RIA~HEAGHa  185 (335)
                      |-.|.|++|+.|++-+..++...+|..              ++|+++.|-...+       +.+++++++.+|||||||+
T Consensus       522 l~n~~neaa~~a~r~~~~~i~~~~~~~--------------a~~Rvi~G~~~~~-------~~~~~~~~~~~a~~eagha  580 (774)
T KOG0731|consen  522 LANLCNEAALLAARKGLREIGTKDLEY--------------AIERVIAGMEKKS-------RVLSLEEKKTVAYHEAGHA  580 (774)
T ss_pred             HHhhhhHHHHHHHHhccCccchhhHHH--------------HHHHHhccccccc-------hhcCHhhhhhhhhhhccch
Confidence            678999999999999999888777776              8999999865333       3358999999999999999


Q ss_pred             HHHHHhC--CCCceeeecchhhhhhcCccccccceeeecchhhhhhccccCCHHHHHHHHHHHchhHHHHHHHhC-C-cc
Q 019829          186 LIAYLVG--ILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYG-Y-AE  261 (335)
Q Consensus       186 LVAyllg--~PV~~~TI~preal~~~G~~~~~gG~~f~~~~~~~~~~~g~~t~~~L~r~i~VlLAGrAAE~lvyG-~-at  261 (335)
                      ++++++.  +|+.++||+|       |  + ..|+++..|..     .+++|+++|..++|++|||||||+++|| + ++
T Consensus       581 ~~g~~l~~~dpl~kvsIiP-------G--q-alG~a~~~P~~-----~~l~sk~ql~~rm~m~LGGRaAEev~fg~~iTt  645 (774)
T KOG0731|consen  581 VVGWLLEHADPLLKVSIIP-------G--Q-ALGYAQYLPTD-----DYLLSKEQLFDRMVMALGGRAAEEVVFGSEITT  645 (774)
T ss_pred             hhhccccccCcceeEEecc-------C--C-ccceEEECCcc-----cccccHHHHHHHHHHHhCcchhhheecCCccCc
Confidence            9998887  5999999999       5  2 45666666652     3899999999999999999999999998 4 46


Q ss_pred             chhhHHHHHHHHHHh----cCCCH--------------------------HHHHHHHHH----HHHHHHHHHHHcHHHHH
Q 019829          262 GGLADINKLDALLKG----LGFTQ--------------------------KKADSQVRW----SLLNTVLLLRRHKGARA  307 (335)
Q Consensus       262 Gg~~Dl~qat~i~~~----lG~s~--------------------------~~id~evR~----A~~~A~~LL~~~r~ale  307 (335)
                      |+.+|++++|++++.    +||++                          +.||.++|+    ||++|.++|++|++.++
T Consensus       646 ga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~~~~~~~p~s~~~~~~Id~ev~~lv~~ay~~~~~ll~~n~~~l~  725 (774)
T KOG0731|consen  646 GAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPGDESFRKPYSEKTAQLIDTEVRRLVQKAYERTKELLRTNRDKLD  725 (774)
T ss_pred             hhhccHHHHHHHHHHHHHHcCcccccCceeccCcccccccccCccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHH
Confidence            999999999999865    56541                          357777774    89999999999999999


Q ss_pred             HHHHHHHcccch--HHHHHHHHhh
Q 019829          308 KLAVAMTMGKSV--GSCIDIIEDN  329 (335)
Q Consensus       308 aLaeaLl~~esl--~~ci~~Ie~~  329 (335)
                      .+++.|+++|++  ++++.++..-
T Consensus       726 ~ia~~LLeke~l~~ee~~~ll~~~  749 (774)
T KOG0731|consen  726 KIAEVLLEKEVLTGEEIIALLGER  749 (774)
T ss_pred             HHHHHHHHhhhccHHHHHHHhccC
Confidence            999999999998  8888887653

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.10  E-value=1e-10  Score=133.01  Aligned_cols=138  Identities=12%  Similarity=0.015  Sum_probs=100.2

Q ss_pred             chhhhhHHHHHHHHHHhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCCCCccccccccCCCCHhHHHHHHHHHHh
Q 019829          104 ETLGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAG  183 (335)
Q Consensus       104 ~~l~sv~n~~a~~a~~g~~~~~~~~~l~~~~~~~~~~~~l~~~aiD~V~lGg~~~~lvld~~~~~~s~~~r~RIA~HEAG  183 (335)
                      .-|..+.|+|++.|++-+-+.+..-.+..              |+|++++|-+..         ..+.+++ +|++||+|
T Consensus      1844 ADLanLvNEAaliAirq~ks~Id~~~I~~--------------Al~Rq~~g~~~~---------~~~~~~~-~ia~yEiG 1899 (2281)
T CHL00206       1844 RDLVALTNEALSISITQKKSIIDTNTIRS--------------ALHRQTWDLRSQ---------VRSVQDH-GILFYQIG 1899 (2281)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCHHHHHH--------------HHHHHHhhhhhc---------ccCcchh-hhhhhHHh
Confidence            34788889999999999888776555554              899999996532         1134444 48999999


Q ss_pred             HHHHHHHhC--CCCceeeecch-hhhhhcCccccccceeeecchhhhhhccccCCHHHHHHHHHHHchhHHHHHHHhCCc
Q 019829          184 HFLIAYLVG--ILPKGYTLTSF-EALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYA  260 (335)
Q Consensus       184 HaLVAyllg--~PV~~~TI~pr-eal~~~G~~~~~gG~~f~~~~~~~~~~~g~~t~~~L~r~i~VlLAGrAAE~lvyG~a  260 (335)
                      ||+|+.++.  +||.++||.|. +.++. |   ...|+++..+.      +..+++.++..+++++|||+|||++.|+..
T Consensus      1900 hAvvq~~L~~~~pv~kISIy~~~~~~r~-~---~~yl~~wyle~------~~~mkk~tiL~~Il~cLAGraAedlwf~~~ 1969 (2281)
T CHL00206       1900 RAVAQNVLLSNCPIDPISIYMKKKSCKE-G---DSYLYKWYFEL------GTSMKKLTILLYLLSCSAGSVAQDLWSLPG 1969 (2281)
T ss_pred             HHHHHHhccCCCCcceEEEecCCccccC-c---ccceeEeecCC------cccCCHHHHHHHHHHHhhhhhhhhhccCcc
Confidence            999999985  79999999642 22222 2   23366665542      257899999999999999999999999632


Q ss_pred             -------c--c-hhhHHHHHHHHHH
Q 019829          261 -------E--G-GLADINKLDALLK  275 (335)
Q Consensus       261 -------t--G-g~~Dl~qat~i~~  275 (335)
                             +  | ..+|+.-+-.++.
T Consensus      1970 ~~~~n~It~yg~vEnD~~La~glLe 1994 (2281)
T CHL00206       1970 PDEKNGITSYGLVENDSDLVHGLLE 1994 (2281)
T ss_pred             hhhhcCcccccchhhhhHHhHhHHH
Confidence                   1  2 2567777766654

>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=97.16  E-value=0.00071  Score=61.52  Aligned_cols=24  Identities=38%  Similarity=0.801  Sum_probs=21.4

Q ss_pred             HHHHHHhHHHHHHHhCCCCceeee
Q 019829          177 VIQHEAGHFLIAYLVGILPKGYTL  200 (335)
Q Consensus       177 IA~HEAGHaLVAyllg~PV~~~TI  200 (335)
                      |..||.||+++|...|.+|.+++|
T Consensus        12 v~iHElGH~~~Ar~~Gv~v~~f~i   35 (182)
T cd06163          12 IFVHELGHFLVAKLFGVKVEEFSI   35 (182)
T ss_pred             HHHHHHHHHHHHHHcCCeeeEeee
Confidence            789999999999999999888543

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.

>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=96.68  E-value=0.0024  Score=59.77  Aligned_cols=60  Identities=35%  Similarity=0.381  Sum_probs=45.3

Q ss_pred             HHHHHHHhHHHHHHHhCCCCceeeecchhhhhhcCccccccceeeecchhhhhhccccCCHHHHHHHHHHHchhHHHHHH
Q 019829          176 RVIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYL  255 (335)
Q Consensus       176 RIA~HEAGHaLVAyllg~PV~~~TI~preal~~~G~~~~~gG~~f~~~~~~~~~~~g~~t~~~L~r~i~VlLAGrAAE~l  255 (335)
                      -+..||.||+++|..+|.||+++++.|.      |      |++..++.+        .++   .+.+.|++||-++.-+
T Consensus        55 ~v~iHElgH~~~A~~~G~~v~~i~l~p~------G------g~~~~~~~~--------~~~---~~~~~IalAGPl~Nll  111 (227)
T cd06164          55 SVLLHELGHSLVARRYGIPVRSITLFLF------G------GVARLEREP--------ETP---GQEFVIAIAGPLVSLV  111 (227)
T ss_pred             HHHHHHHHHHHHHHHcCCeECeEEEEee------e------EEEEecCCC--------CCH---HHHhhhhhhHHHHHHH
Confidence            4779999999999999999999999986      4      444433221        132   4567899999999877


Q ss_pred             HhC
Q 019829          256 LYG  258 (335)
Q Consensus       256 vyG  258 (335)
                      ...
T Consensus       112 la~  114 (227)
T cd06164         112 LAL  114 (227)
T ss_pred             HHH
Confidence            654

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha

>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=96.45  E-value=0.0034  Score=57.83  Aligned_cols=60  Identities=40%  Similarity=0.486  Sum_probs=44.4

Q ss_pred             HHHHHHHhHHHHHHHhCCCCceeeecchhhhhhcCccccccceeeecchhhhhhccccCCHHHHHHHHHHHchhHHHHHH
Q 019829          176 RVIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYL  255 (335)
Q Consensus       176 RIA~HEAGHaLVAyllg~PV~~~TI~preal~~~G~~~~~gG~~f~~~~~~~~~~~g~~t~~~L~r~i~VlLAGrAAE~l  255 (335)
                      -+..||-||+++|..+|.|++++++.|.      |      |....+..       .. +   -.+.+.|++||-.+.-+
T Consensus        40 ~v~iHElgH~~~A~~~G~~v~~i~l~p~------G------g~~~~~~~-------~~-~---~~~~~lIalAGPl~n~~   96 (208)
T cd06161          40 SVLLHELGHALVARRYGIRVRSITLLPF------G------GVAELEEE-------PE-T---PKEEFVIALAGPLVSLL   96 (208)
T ss_pred             HHHHHHHHHHHHHHHcCCCccceEEEee------e------eeeeeccC-------CC-C---hhHheeeeeehHHHHHH
Confidence            4789999999999999999999999986      4      33322211       11 2   24567799999999977


Q ss_pred             HhC
Q 019829          256 LYG  258 (335)
Q Consensus       256 vyG  258 (335)
                      +..
T Consensus        97 la~   99 (208)
T cd06161          97 LAG   99 (208)
T ss_pred             HHH
Confidence            754

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=96.37  E-value=0.0036  Score=63.82  Aligned_cols=26  Identities=27%  Similarity=0.523  Sum_probs=23.4

Q ss_pred             HHHHHHHhHHHHHHHhCCCCceeeec
Q 019829          176 RVIQHEAGHFLIAYLVGILPKGYTLT  201 (335)
Q Consensus       176 RIA~HEAGHaLVAyllg~PV~~~TI~  201 (335)
                      -|.+||.||||+|.+.|+.|.+++|-
T Consensus        17 li~vHElGHfl~Ar~~gv~V~~FsiG   42 (449)
T PRK10779         17 LITVHEFGHFWVARRCGVRVERFSIG   42 (449)
T ss_pred             HHHHHHHHHHHHHHHcCCeeeEEEee
Confidence            38899999999999999999888774

>TIGR00054 RIP metalloprotease RseP

Probab=96.26  E-value=0.0037  Score=63.30  Aligned_cols=22  Identities=45%  Similarity=0.653  Sum_probs=19.9

Q ss_pred             HHHHHHHhHHHHHHHhCCCCce
Q 019829          176 RVIQHEAGHFLIAYLVGILPKG  197 (335)
Q Consensus       176 RIA~HEAGHaLVAyllg~PV~~  197 (335)
                      -|.+||.||+|+|.+.|..|.+
T Consensus        16 ~v~~HE~gH~~~a~~~g~~v~~   37 (420)
T TIGR00054        16 LIFVHELGHFLAARLCGIKVER   37 (420)
T ss_pred             HHHHHhHHHHHHHHHcCCEEEE
Confidence            3899999999999999988875

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=95.86  E-value=0.0066  Score=53.91  Aligned_cols=76  Identities=25%  Similarity=0.112  Sum_probs=40.6

Q ss_pred             HHHHHHhHHHHHHHhCCCCceeeecc----hhhhhhcCc-cccccceeeecchhhhhhccccCCHHHHHHHHHHHchhHH
Q 019829          177 VIQHEAGHFLIAYLVGILPKGYTLTS----FEALKKEGS-LNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVA  251 (335)
Q Consensus       177 IA~HEAGHaLVAyllg~PV~~~TI~p----real~~~G~-~~~~gG~~f~~~~~~~~~~~g~~t~~~L~r~i~VlLAGrA  251 (335)
                      +..||.||+++|+..|+++.+.++..    ..-....|. .---||++...+..  .   .. .+..-.+++.|.+||-.
T Consensus        11 i~iHE~gH~~~A~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ip~gG~~~~~~~~--~---~~-~~~~~~~~~~i~laGPl   84 (180)
T cd05709          11 VTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIPLGGYAKPVGEN--P---RA-FKKPRWQRLLVALAGPL   84 (180)
T ss_pred             HHHHHHHHHHHHHHcCCCchheeeeEEECCcCCCCEehHHHHhccCeeccCCCC--h---hh-hccchhhhhhhhhhhHH
Confidence            78999999999999999765544321    100000000 00013433222111  0   00 01123566789999999


Q ss_pred             HHHHHhC
Q 019829          252 TEYLLYG  258 (335)
Q Consensus       252 AE~lvyG  258 (335)
                      +.-+...
T Consensus        85 ~nllla~   91 (180)
T cd05709          85 ANLLLAL   91 (180)
T ss_pred             HHHHHHH
Confidence            9987664

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin

>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.77  E-value=0.0083  Score=53.52  Aligned_cols=25  Identities=32%  Similarity=0.359  Sum_probs=18.0

Q ss_pred             HHHHHHhHHHHHHHhCCCCceeeec
Q 019829          177 VIQHEAGHFLIAYLVGILPKGYTLT  201 (335)
Q Consensus       177 IA~HEAGHaLVAyllg~PV~~~TI~  201 (335)
                      +..||.||+++|+..|+++.++++.
T Consensus        10 i~~HE~gH~~~a~~~G~~~~~~~~~   34 (192)
T PF02163_consen   10 IVLHELGHALAARLYGDKVPRFEGG   34 (192)
T ss_dssp             HHHHHHHHHHHHHTTT--B--EEE-
T ss_pred             ccccccccccccccccccccccccc
Confidence            6899999999999999988888543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.

>PF13398 Peptidase_M50B: Peptidase M50B-like

Probab=95.54  E-value=0.015  Score=53.43  Aligned_cols=27  Identities=41%  Similarity=0.436  Sum_probs=25.3

Q ss_pred             HHHHHHHhHHHHHHHhCCCCceeeecc
Q 019829          176 RVIQHEAGHFLIAYLVGILPKGYTLTS  202 (335)
Q Consensus       176 RIA~HEAGHaLVAyllg~PV~~~TI~p  202 (335)
                      -+..||.||++++.+.|-.|+++++.|
T Consensus        24 ~t~~HE~gHal~a~l~G~~v~~i~l~~   50 (200)
T PF13398_consen   24 VTFVHELGHALAALLTGGRVKGIVLFP   50 (200)
T ss_pred             HHHHHHHHHHHHHHHhCCCcceEEEEe
Confidence            389999999999999998999999987

>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism

Probab=94.85  E-value=0.046  Score=53.10  Aligned_cols=67  Identities=22%  Similarity=0.212  Sum_probs=45.5

Q ss_pred             HHHHHHHhHHHHHHHhCCCCceeeecchhhhhhcCccccccceeeecchhhhhhccccCCHHHHHHHHHHHchhHHHHHH
Q 019829          176 RVIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYL  255 (335)
Q Consensus       176 RIA~HEAGHaLVAyllg~PV~~~TI~preal~~~G~~~~~gG~~f~~~~~~~~~~~g~~t~~~L~r~i~VlLAGrAAE~l  255 (335)
                      -+..||-||+++|...|++|+++.+.+.        .-..||  |.++.+++ .  ...++   .+++.|++||.++.-+
T Consensus       137 svvvHElgHal~A~~~gi~V~~iGl~l~--------~~~pGa--~ve~~~e~-~--~~~~~---~~~l~Ia~AGp~~Nlv  200 (277)
T cd06162         137 SGVVHEMGHGVAAVREQVRVNGFGIFFF--------IIYPGA--YVDLFTDH-L--NLISP---VQQLRIFCAGVWHNFV  200 (277)
T ss_pred             HHHHHHHHHHHHHHHcCCeeceEEEeee--------eccCee--EEeecccc-c--ccCCh---hhhhheehhhHHHHHH
Confidence            3579999999999999999999988754        011133  55543321 1  22333   3477899999999887


Q ss_pred             HhC
Q 019829          256 LYG  258 (335)
Q Consensus       256 vyG  258 (335)
                      .-.
T Consensus       201 La~  203 (277)
T cd06162         201 LGL  203 (277)
T ss_pred             HHH
Confidence            654

In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.

>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=94.53  E-value=0.041  Score=49.82  Aligned_cols=77  Identities=18%  Similarity=0.213  Sum_probs=42.7

Q ss_pred             HHHHHHhHHHHHHHhCCCCc----eeeecchhhhhhcCcccc----ccceeeecchhhhhhccccCCHHHHHHHHHHHch
Q 019829          177 VIQHEAGHFLIAYLVGILPK----GYTLTSFEALKKEGSLNV----QAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALA  248 (335)
Q Consensus       177 IA~HEAGHaLVAyllg~PV~----~~TI~preal~~~G~~~~----~gG~~f~~~~~~~~~~~g~~t~~~L~r~i~VlLA  248 (335)
                      +..||.||+++|+..|++-.    ..|+.|..-+---|+.-.    ..|..+..|.+.+.   ..+ ++.-.+...|.+|
T Consensus        12 i~~HE~aHa~~A~~~Gd~t~~~~Grltlnp~~hid~~g~l~~~~~~~~~~G~a~p~~~~~---~~~-~~~r~~~~~valA   87 (181)
T cd06158          12 ITLHEFAHAYVAYRLGDPTARRAGRLTLNPLAHIDPIGTIILPLLLPFLFGWAKPVPVNP---RNF-KNPRRGMLLVSLA   87 (181)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHcCceecCcHHhcCcchHHHHHHHHHhCeEEecccccCh---Hhh-cccHhhHhhhhhh
Confidence            68999999999999998633    467666411111111100    00333444433111   111 2222456779999


Q ss_pred             hHHHHHHHh
Q 019829          249 GVATEYLLY  257 (335)
Q Consensus       249 GrAAE~lvy  257 (335)
                      |-++.-+..
T Consensus        88 GP~~n~~la   96 (181)
T cd06158          88 GPLSNLLLA   96 (181)
T ss_pred             hHHHHHHHH
Confidence            999987554

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.

>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=93.07  E-value=0.083  Score=48.14  Aligned_cols=64  Identities=25%  Similarity=0.187  Sum_probs=41.3

Q ss_pred             HHHHHHHhHHHHHHHhCCCCceeeecchhhhhhcCccccccceeeecchhhhhhccccCCHHHHHHHHHHHchhHHHHHH
Q 019829          176 RVIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYL  255 (335)
Q Consensus       176 RIA~HEAGHaLVAyllg~PV~~~TI~preal~~~G~~~~~gG~~f~~~~~~~~~~~g~~t~~~L~r~i~VlLAGrAAE~l  255 (335)
                      -+..||.||+++|...|+++.+..+.|-   ..-|   .-|+..-++ +       ...++   .+.+.|.+||-++--+
T Consensus        43 ~l~iHElgH~~~A~~~G~~~~~~~l~P~---~~~G---~~G~~~~~~-~-------~~~~~---~~~~~IalAGPl~nl~  105 (183)
T cd06160          43 ILGIHEMGHYLAARRHGVKASLPYFIPF---PFIG---TFGAFIRMR-S-------PIPNR---KALFDIALAGPLAGLL  105 (183)
T ss_pred             HHHHHHHHHHHHHHHCCCCccceeeeeh---HhcC---cEEEEEEec-C-------CCCCh---hHhehhhhhHHHHHHH
Confidence            4789999999999999999999988882   0012   123321111 1       11232   4566788888888755


Q ss_pred             H
Q 019829          256 L  256 (335)
Q Consensus       256 v  256 (335)
                      .
T Consensus       106 l  106 (183)
T cd06160         106 L  106 (183)
T ss_pred             H
Confidence            4

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.

>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=91.73  E-value=0.071  Score=51.30  Aligned_cols=66  Identities=26%  Similarity=0.186  Sum_probs=40.8

Q ss_pred             HHHHHHhHHHHHHHhCCCCceeeecchhhhhhcCccccccceeeecchhhhhhccccCCHHHHHHHHHHHchhHHHHHHH
Q 019829          177 VIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLL  256 (335)
Q Consensus       177 IA~HEAGHaLVAyllg~PV~~~TI~preal~~~G~~~~~gG~~f~~~~~~~~~~~g~~t~~~L~r~i~VlLAGrAAE~lv  256 (335)
                      +..||.||+++|...|++|+.+.+.-.      .  ---||  |..++.. +  ....+   -.++..|++||-.+.-+.
T Consensus       121 v~iHElgHa~~Ar~~G~~V~~iGl~l~------~--ip~Gg--~v~~~~~-~--~~~~~---~~~~~~Ia~AGP~~Nlvl  184 (263)
T cd06159         121 VVVHELSHGILARVEGIKVKSGGLLLL------I--IPPGA--FVEPDEE-E--LNKAD---RRIRLRIFAAGVTANFVV  184 (263)
T ss_pred             HHHHHHHHHHHHHHcCCEECchhHHHH------h--hhcEE--EEEecch-h--hccCC---hhheeeeeeehHHHHHHH
Confidence            779999999999999999887654210      0  00223  4444321 1  11122   245678999999988665


Q ss_pred             hC
Q 019829          257 YG  258 (335)
Q Consensus       257 yG  258 (335)
                      ..
T Consensus       185 a~  186 (263)
T cd06159         185 AL  186 (263)
T ss_pred             HH
Confidence            43

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.

>PF14247 DUF4344: Domain of unknown function (DUF4344)

Probab=81.41  E-value=1.1  Score=42.31  Aligned_cols=22  Identities=36%  Similarity=0.410  Sum_probs=17.1

Q ss_pred             HHHHHHHhHHHHHHHhCCCCcee
Q 019829          176 RVIQHEAGHFLIAYLVGILPKGY  198 (335)
Q Consensus       176 RIA~HEAGHaLVAyllg~PV~~~  198 (335)
                      -|.+||.||+|+..+ ++||.|=
T Consensus        94 ~~l~HE~GHAlI~~~-~lPv~Gr  115 (220)
T PF14247_consen   94 FTLYHELGHALIDDL-DLPVLGR  115 (220)
T ss_pred             HHHHHHHHHHHHHHh-cCCcccc
Confidence            488999999999876 4466653

>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site

Probab=81.09  E-value=0.66  Score=39.41  Aligned_cols=17  Identities=41%  Similarity=0.425  Sum_probs=14.1

Q ss_pred             CHhHHHHHHHHHHhHHH
Q 019829          170 SQKYHNRVIQHEAGHFL  186 (335)
Q Consensus       170 s~~~r~RIA~HEAGHaL  186 (335)
                      +..+...|+.||.||+|
T Consensus       101 ~~~~~~~v~~HEiGHaL  117 (154)
T PF00413_consen  101 SGNDLQSVAIHEIGHAL  117 (154)
T ss_dssp             SSEEHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhhhcccccc
Confidence            45677889999999985

; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	335
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.8 bits (162), Expect = 3e-12
 Identities = 52/339 (15%), Positives = 110/339 (32%), Gaps = 75/339 (22%)

Query: 6   YNNLCLL------SSR------PRVKVLSLSR---IVSSSEVEVSKRRVLKQVDEELSKG 50
           Y N CLL      +++         K+L  +R   +        +    L      L+  
Sbjct: 243 YEN-CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 51  DERAALALV-----KDL-----QGKPGGLRCFGAA-RQIPQRL-----YTLDELKLNGIE 94
           + ++ L        +DL        P  L     + R              D+L    IE
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT-TIIE 360

Query: 95  TRSL--LSPVD-----ETLGSIERNLQLAAIVGGVSAWNVFGFNPQQIL--YLSLALLFL 145
           + SL  L P +     + L     +  +  I+  +  ++V   +   ++      +L+  
Sbjct: 361 S-SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 146 WTVDSVSYNGGVGSLVLDTIGHTFSQKY-HNRVIQH-------EAGHFLIAYLVG----- 192
              +S      + S+ L+      ++   H  ++ H       ++   +  YL       
Sbjct: 420 QPKESTIS---IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 193 ILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVAT 252
           I   G+ L + E  ++           F+DF FLE     K+   +    +  ++     
Sbjct: 477 I---GHHLKNIEHPERMTLFR----MVFLDFRFLE----QKIRHDSTAWNASGSILNTLQ 525

Query: 253 EYLLYGYAEGGLADI-NKLDALLKGLG-FTQKKADSQVR 289
           +   Y   +  + D   K + L+  +  F  K  ++ + 
Sbjct: 526 QLKFY---KPYICDNDPKYERLVNAILDFLPKIEENLIC 561

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	335
2di4_A	238	Zinc protease, cell division protein FTSH homolog;	100.0
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.95
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.94
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	96.26

>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1

Probab=100.00  E-value=7.3e-35  Score=271.24  Aligned_cols=152  Identities=15%  Similarity=0.177  Sum_probs=119.7

Q ss_pred             ccCCCCHhHHHHHHHHHHhHHHHHHHhC--CCCceeeecchhhhhhcCccccccceeeecchhhhhhccccCCHHHHHHH
Q 019829          165 IGHTFSQKYHNRVIQHEAGHFLIAYLVG--ILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRF  242 (335)
Q Consensus       165 ~~~~~s~~~r~RIA~HEAGHaLVAyllg--~PV~~~TI~preal~~~G~~~~~gG~~f~~~~~~~~~~~g~~t~~~L~r~  242 (335)
                      .++.+|+++|++||||||||||||++++  +||++|||+||      |   ..+|+++..|+.    +++.+|+++|.++
T Consensus         7 k~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPR------G---~alG~t~~~P~e----d~~~~tk~~l~~~   73 (238)
T 2di4_A            7 SHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPR------G---MALGVTQQLPIE----DKHIYDKKDLYNK   73 (238)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC-----------------------------CCCCBHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeec------C---CcceEEEeCCcc----cccccCHHHHHHH
Confidence            3455799999999999999999999998  79999999998      5   255766655432    4678999999999


Q ss_pred             HHHHchhHHHHHHHh--CC-ccchhhHHHHHHHHHHh----cCCCH-----------------------------HHHHH
Q 019829          243 SCIALAGVATEYLLY--GY-AEGGLADINKLDALLKG----LGFTQ-----------------------------KKADS  286 (335)
Q Consensus       243 i~VlLAGrAAE~lvy--G~-atGg~~Dl~qat~i~~~----lG~s~-----------------------------~~id~  286 (335)
                      ++|+|||||||+|+|  |+ ++|++||++++|++++.    +|||.                             ..+|.
T Consensus        74 i~v~LgGRaAEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~iD~  153 (238)
T 2di4_A           74 ILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDE  153 (238)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCccccccccccccccCHHHHHHHHH
Confidence            999999999999999  66 57999999999998754    67753                             23566


Q ss_pred             HHH----HHHHHHHHHHHHcHHHHHHHHHHHHcccch--HHHHHHHHhh
Q 019829          287 QVR----WSLLNTVLLLRRHKGARAKLAVAMTMGKSV--GSCIDIIEDN  329 (335)
Q Consensus       287 evR----~A~~~A~~LL~~~r~aleaLaeaLl~~esl--~~ci~~Ie~~  329 (335)
                      ++|    +||.+|++||++|++.+++||++|+++|||  +++.++|+..
T Consensus       154 Ev~~il~~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~  202 (238)
T 2di4_A          154 EVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLY  202 (238)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccC
Confidence            665    899999999999999999999999999999  8888998763

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.95  E-value=1e-27  Score=241.94  Aligned_cols=191  Identities=19%  Similarity=0.205  Sum_probs=135.8

Q ss_pred             hhhhHHHHHHHHHHhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCCCCccccccccCCCCHhHHHHHHHHHHhHH
Q 019829          106 LGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHF  185 (335)
Q Consensus       106 l~sv~n~~a~~a~~g~~~~~~~~~l~~~~~~~~~~~~l~~~aiD~V~lGg~~~~lvld~~~~~~s~~~r~RIA~HEAGHa  185 (335)
                      |.++.|++++.|...+...+..-++              ..++|++.+|.....       ..++++++++++|||+||+
T Consensus       225 L~~lv~~Aal~A~~~~~~~I~~~dl--------------~~al~~v~~~~~~~~-------~~~~~~e~~~~a~~e~G~a  283 (476)
T 2ce7_A          225 LENLVNEAALLAAREGRDKITMKDF--------------EEAIDRVIAGPARKS-------LLISPAEKRIIAYHEAGHA  283 (476)
T ss_dssp             HHHHHHHHHHHHHHTTCSSBCHHHH--------------HHHHHHHC---------------CCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCeecHHHH--------------HHHHHHHhcCccccc-------hhhhcchhhhhHHHHhhhH
Confidence            5666677777666554333322222              347899988765332       3468999999999999999


Q ss_pred             HHHHHhC--CCCceeeecchhhhhhcCccccccceeeecchhhhhhccccCCHHHHHHHHHHHchhHHHHHHHhCCc-cc
Q 019829          186 LIAYLVG--ILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYA-EG  262 (335)
Q Consensus       186 LVAyllg--~PV~~~TI~preal~~~G~~~~~gG~~f~~~~~~~~~~~g~~t~~~L~r~i~VlLAGrAAE~lvyG~a-tG  262 (335)
                      +++++++  .|++++||.|+      |  ...+|+++..|+.    +.+.+|+++|.++++|+|||||||+++||++ +|
T Consensus       284 ~~~~~l~~~~~~~~~~i~pr------g--~~alg~~~~~p~~----~~~~~~~~~l~~~i~~~l~Gr~ae~~~~g~~~~g  351 (476)
T 2ce7_A          284 VVSTVVPNGEPVHRISIIPR------G--YKALGYTLHLPEE----DKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSG  351 (476)
T ss_dssp             HHHHHSTTCCCCCEEECC-----------------------------CCSCBHHHHHHHHHHHTHHHHHHHHHHSSCCGG
T ss_pred             HHhhccCCccccceeeeecC------c--ccccceEEEcCcc----cccccCHHHHHHHHHHHHhHHHHHhhhcCCCCcc
Confidence            9999997  68999999997      4  2355666555432    4578999999999999999999999999995 59


Q ss_pred             hhhHHHHHHHHHHh----cCCCH-------------------------------HHHHHHHH----HHHHHHHHHHHHcH
Q 019829          263 GLADINKLDALLKG----LGFTQ-------------------------------KKADSQVR----WSLLNTVLLLRRHK  303 (335)
Q Consensus       263 g~~Dl~qat~i~~~----lG~s~-------------------------------~~id~evR----~A~~~A~~LL~~~r  303 (335)
                      ++||++++|++++.    +|||.                               ..+|++++    .+|.+|++||++|+
T Consensus       352 a~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~  431 (476)
T 2ce7_A          352 AANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYR  431 (476)
T ss_dssp             GHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            99999999999754    57642                               13566665    69999999999999


Q ss_pred             HHHHHHHHHHHcccch--HHHHHHHHhh
Q 019829          304 GARAKLAVAMTMGKSV--GSCIDIIEDN  329 (335)
Q Consensus       304 ~aleaLaeaLl~~esl--~~ci~~Ie~~  329 (335)
                      +.++++|++|+++|||  +++.++++..
T Consensus       432 ~~l~~~a~~l~~~e~l~~~~~~~~~~~~  459 (476)
T 2ce7_A          432 KQLDNIVEILLEKETIEGDELRRILSEE  459 (476)
T ss_dssp             HHHHHHHHHHHHHSEEEHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHhCeeCHHHHHHHhccc
Confidence            9999999999999999  7887888763

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.94  E-value=1.5e-26  Score=234.74  Aligned_cols=189  Identities=20%  Similarity=0.176  Sum_probs=149.9

Q ss_pred             hhhhHHHHHHHHHHhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCCCCccccccccCCCCHhHHHHHHHHHHhHH
Q 019829          106 LGSIERNLQLAAIVGGVSAWNVFGFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHF  185 (335)
Q Consensus       106 l~sv~n~~a~~a~~g~~~~~~~~~l~~~~~~~~~~~~l~~~aiD~V~lGg~~~~lvld~~~~~~s~~~r~RIA~HEAGHa  185 (335)
                      |.++-|++++.|.+.+...+..-++.              .++|++.+|....+       +.++++++++++|||+||+
T Consensus       240 L~~lv~~Aa~~A~~~~~~~It~~dl~--------------~al~~v~~~~~~~~-------~~~~~~e~~~~a~~e~g~a  298 (499)
T 2dhr_A          240 LENLLNEAALLAAREGRRKITMKDLE--------------EAADRVMMLPAKKS-------LVLSPRDRRITAYHEAGHA  298 (499)
T ss_dssp             HHHHHHHHHHHHTTTCCSSCCSHHHH--------------HHHHHHTTCSSSSC-------CCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCccCHHHHH--------------HHHHHHhccccccc-------chhhHHHHhhhHHHHHHHH
Confidence            66777777777766544333322332              37899999865332       3468999999999999999


Q ss_pred             HHHHHhC--CCCceeeecchhhhhhcCccccccceeeecchhhhhhccccCCHHHHHHHHHHHchhHHHHHHHhCCc-cc
Q 019829          186 LIAYLVG--ILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYA-EG  262 (335)
Q Consensus       186 LVAyllg--~PV~~~TI~preal~~~G~~~~~gG~~f~~~~~~~~~~~g~~t~~~L~r~i~VlLAGrAAE~lvyG~a-tG  262 (335)
                      +|+|+++  .||+++||.|+      |   ...|+++  |.   +.+.+.+|+.++..+|+++|||||||+++||++ +|
T Consensus       299 v~~~~l~~~~~v~~~~i~pr------~---~~~g~~~--p~---q~~~~~~t~~~l~~~i~~~lgGr~ae~~~~g~~~~g  364 (499)
T 2dhr_A          299 LAAHFLEHADGVHKVTIVPR------G---RALGFMM--PR---REDMLHWSRKRLLDQIAVALAGRAAEEIVFDDVTTG  364 (499)
T ss_dssp             HHHCCSSSCCCCCCEESCCS------S---CTTCSSH--HH---HTTCCCCCHHHHHHHHHHHHHHHHHHHHHSCSCCBC
T ss_pred             HHHhhcCCCCeeeEEEeecC------C---CcCcccc--cc---hhhhhccCHHHHHHHHHHHhhhHhHHHhhhcccCcc
Confidence            9999986  58999999997      4   3456655  32   134578899999999999999999999999995 59


Q ss_pred             hhhHHHHHHHHHHh----cCCCH----------------------------HHHHHHHH----HHHHHHHHHHHHcHHHH
Q 019829          263 GLADINKLDALLKG----LGFTQ----------------------------KKADSQVR----WSLLNTVLLLRRHKGAR  306 (335)
Q Consensus       263 g~~Dl~qat~i~~~----lG~s~----------------------------~~id~evR----~A~~~A~~LL~~~r~al  306 (335)
                      ++||++++|++++.    +|||.                            ..+|.+++    ++|.+|++||++|++.+
T Consensus       365 a~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l  444 (499)
T 2dhr_A          365 AENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVL  444 (499)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998864    56642                            24566665    69999999999999999


Q ss_pred             HHHHHHHHcccch--HHHHHHHHhh
Q 019829          307 AKLAVAMTMGKSV--GSCIDIIEDN  329 (335)
Q Consensus       307 eaLaeaLl~~esl--~~ci~~Ie~~  329 (335)
                      ++||++|+++|||  +++.++++..
T Consensus       445 ~~~a~~l~~~e~l~~~~~~~~~~~~  469 (499)
T 2dhr_A          445 ERVAETLLERETLTAEEFQRVVEGL  469 (499)
T ss_dssp             HHHHHHHHHHSEECHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCeeCHHHHHHHhccC
Confidence            9999999999999  7888888764

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}

Probab=96.26  E-value=0.0033  Score=57.41  Aligned_cols=57  Identities=25%  Similarity=0.372  Sum_probs=41.8

Q ss_pred             HHHHHHHhHHHHHHHhCCCCceeeecchhhhhhcCccccccceeeecchhhhhhccccCCHHHHHHHHHHHchhHHHHHH
Q 019829          176 RVIQHEAGHFLIAYLVGILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYL  255 (335)
Q Consensus       176 RIA~HEAGHaLVAyllg~PV~~~TI~preal~~~G~~~~~gG~~f~~~~~~~~~~~g~~t~~~L~r~i~VlLAGrAAE~l  255 (335)
                      -+..||.||+++|+..|+++.++++.|.      |      |+.  ..+  +      .++   .+...|.+||-.+.-+
T Consensus        50 ~v~~HElgH~~~A~~~G~~~~~i~l~p~------G------g~~--~~~--~------~~~---~~~~~ValAGPl~nl~  104 (224)
T 3b4r_A           50 SVVLHELGHSYVAKKYGVKIEKILLLPI------G------GVA--MMD--K------IPK---EGELRIGIAGPLVSFI  104 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCCEEECSS------S------CBC--CCC--C------CCS---SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCccccEEEEEe------e------eEE--Ecc--c------CCc---cceeeeeeeHHHHHHH
Confidence            4678999999999999999999999986      4      322  211  1      111   3466799999998865


Q ss_pred             Hh
Q 019829          256 LY  257 (335)
Q Consensus       256 vy  257 (335)
                      .-
T Consensus       105 la  106 (224)
T 3b4r_A          105 IG  106 (224)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	335
d2ce7a1	193	Cell division protein FtsH, C-terminal domain {The	99.97
d2di4a1	202	Cell division protein FtsH, C-terminal domain {Aqu	99.97
d1hfca_	157	Fibroblast collagenase (MMP-1) {Human (Homo sapien	84.42
d1rm8a_	169	Matrix metalloproteinase-16 (MMP-16) {Human (Homo	83.72
d1mmqa_	166	Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9	81.22

>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=1.4e-31  Score=236.83  Aligned_cols=147  Identities=20%  Similarity=0.249  Sum_probs=112.5

Q ss_pred             CCHhHHHHHHHHHHhHHHHHHHhC--CCCceeeecchhhhhhcCccccccceeeecchhhhhhccccCCHHHHHHHHHHH
Q 019829          169 FSQKYHNRVIQHEAGHFLIAYLVG--ILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIA  246 (335)
Q Consensus       169 ~s~~~r~RIA~HEAGHaLVAyllg--~PV~~~TI~preal~~~G~~~~~gG~~f~~~~~~~~~~~g~~t~~~L~r~i~Vl  246 (335)
                      +||++|+||||||||||+||++++  .||.++||.|+      |  +..+|++...+.  +  +.+..|++++.+.++|+
T Consensus         2 ls~~er~~vA~HEAGHAlva~~l~~~~~i~~vsI~~r------~--~~~~g~~~~~~~--~--~~~~~t~~~l~~~i~v~   69 (193)
T d2ce7a1           2 ISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPR------G--YKALGYTLHLPE--E--DKYLVSRNELLDKLTAL   69 (193)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------------------CCSCBHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEecC------c--cCCCceeecCCc--c--ccccCcHHHHHHHHHHH
Confidence            699999999999999999999995  57999999997      3  345565544332  2  34678999999999999


Q ss_pred             chhHHHHHHHhCCc-cchhhHHHHHHHHHHh----cCCCH-------------------------------HHHHHHHH-
Q 019829          247 LAGVATEYLLYGYA-EGGLADINKLDALLKG----LGFTQ-------------------------------KKADSQVR-  289 (335)
Q Consensus       247 LAGrAAE~lvyG~a-tGg~~Dl~qat~i~~~----lG~s~-------------------------------~~id~evR-  289 (335)
                      |||||||+++||+. +|+++|++++++++..    +||+.                               ..++++++ 
T Consensus        70 LaGraAE~~~~g~~s~Ga~~Dl~~At~lA~~~v~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~  149 (193)
T d2ce7a1          70 LGGRAAEEVVFGDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKK  149 (193)
T ss_dssp             THHHHHHHHHHSSCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCccCcHHHHHHHHHHHHHhhCcCCCcCceeeccCCccccccccccccccccHHHHHHHHHHHHH
Confidence            99999999999995 6999999999999864    56642                               13555544 


Q ss_pred             ---HHHHHHHHHHHHcHHHHHHHHHHHHcccch--HHHHHHHH
Q 019829          290 ---WSLLNTVLLLRRHKGARAKLAVAMTMGKSV--GSCIDIIE  327 (335)
Q Consensus       290 ---~A~~~A~~LL~~~r~aleaLaeaLl~~esl--~~ci~~Ie  327 (335)
                         .|+.+|+.+|++|++.+++|+++|+++|+|  ++..++|.
T Consensus       150 ll~~a~~~a~~iL~~~~~~l~~la~~Lle~e~L~g~ei~~il~  192 (193)
T d2ce7a1         150 IVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILS  192 (193)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHHc
Confidence               589999999999999999999999999999  45545553

>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.97  E-value=5e-31  Score=234.42  Aligned_cols=148  Identities=16%  Similarity=0.228  Sum_probs=116.1

Q ss_pred             CCHhHHHHHHHHHHhHHHHHHHhC--CCCceeeecchhhhhhcCccccccceeeecchhhhhhccccCCHHHHHHHHHHH
Q 019829          169 FSQKYHNRVIQHEAGHFLIAYLVG--ILPKGYTLTSFEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIA  246 (335)
Q Consensus       169 ~s~~~r~RIA~HEAGHaLVAyllg--~PV~~~TI~preal~~~G~~~~~gG~~f~~~~~~~~~~~g~~t~~~L~r~i~Vl  246 (335)
                      +||++|+||||||||||+||++++  .||.++||+||      |  +..||+.+....     +....|++++.+.++|+
T Consensus         2 ls~~ek~~vA~HEAGHAvva~~l~~~~~v~~vtI~pr------g--~~~g~~~~~~~~-----~~~~~t~~~l~~~i~v~   68 (202)
T d2di4a1           2 ISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPR------G--MALGVTQQLPIE-----DKHIYDKKDLYNKILVL   68 (202)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC-----------------------------CCCCBHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEecC------C--ccccccccCccc-----ccchhhHHHHHHHHHHH
Confidence            689999999999999999999997  58999999998      5  445555544322     34678999999999999


Q ss_pred             chhHHHHHHHhCC---ccchhhHHHHHHHHHHh----cCCCH-----------------------------HHHHHHHH-
Q 019829          247 LAGVATEYLLYGY---AEGGLADINKLDALLKG----LGFTQ-----------------------------KKADSQVR-  289 (335)
Q Consensus       247 LAGrAAE~lvyG~---atGg~~Dl~qat~i~~~----lG~s~-----------------------------~~id~evR-  289 (335)
                      |||||||+++||+   .+|+.+|+++++++++.    +||+.                             ..+|.+++ 
T Consensus        69 LgGraAE~i~~g~~~~~~g~~~dl~~At~~A~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~  148 (202)
T d2di4a1          69 LGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKR  148 (202)
T ss_dssp             HHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHHHHHH
T ss_pred             HhhhhcceeeecCcccccCccchHHHHHHHHHHHHHhhCcccccchhhhcccccchhhhhhccccchhhHHHHHHHHHHH
Confidence            9999999999996   46999999999998754    56531                             13555544 


Q ss_pred             ---HHHHHHHHHHHHcHHHHHHHHHHHHcccch--HHHHHHHHhh
Q 019829          290 ---WSLLNTVLLLRRHKGARAKLAVAMTMGKSV--GSCIDIIEDN  329 (335)
Q Consensus       290 ---~A~~~A~~LL~~~r~aleaLaeaLl~~esl--~~ci~~Ie~~  329 (335)
                         +++.+|+.||++|++.+++|+++|+++++|  ++..++|++.
T Consensus       149 ll~~a~~~a~~iL~~~~~~l~~la~~Lle~etL~~~ei~~il~~~  193 (202)
T d2di4a1         149 IITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLY  193 (202)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHHHC
Confidence               699999999999999999999999999999  7777888874

>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Fibroblast collagenase (MMP-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.42  E-value=0.16  Score=39.83  Aligned_cols=17  Identities=41%  Similarity=0.522  Sum_probs=13.8

Q ss_pred             CHhHHHHHHHHHHhHHH
Q 019829          170 SQKYHNRVIQHEAGHFL  186 (335)
Q Consensus       170 s~~~r~RIA~HEAGHaL  186 (335)
                      +..+...|+.||.||+|
T Consensus       102 ~~~~~~~v~~HEiGHaL  118 (157)
T d1hfca_         102 REYNLHRVAAHELGHSL  118 (157)
T ss_dssp             SSCBHHHHHHHHHHHHH
T ss_pred             ccchhhhhHhhhhhhhc
Confidence            35566789999999996

>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrix metalloproteinase-16 (MMP-16)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.72  E-value=0.17  Score=39.79  Aligned_cols=18  Identities=33%  Similarity=0.180  Sum_probs=14.7

Q ss_pred             CHhHHHHHHHHHHhHHHH
Q 019829          170 SQKYHNRVIQHEAGHFLI  187 (335)
Q Consensus       170 s~~~r~RIA~HEAGHaLV  187 (335)
                      +..+...|+.||.||+|-
T Consensus       113 ~~~~~~~v~~HEiGHaLG  130 (169)
T d1rm8a_         113 DGNDLFLVAVHELGHALG  130 (169)
T ss_dssp             SSEEHHHHHHHHHHHHHT
T ss_pred             Ccchhhhhhhhhhhhhhc
Confidence            356678899999999974

>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrilysin (MMP-7)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.22  E-value=0.23  Score=39.62  Aligned_cols=18  Identities=28%  Similarity=0.104  Sum_probs=14.3

Q ss_pred             CHhHHHHHHHHHHhHHHH
Q 019829          170 SQKYHNRVIQHEAGHFLI  187 (335)
Q Consensus       170 s~~~r~RIA~HEAGHaLV  187 (335)
                      +..+...|+.||.||||-
T Consensus       110 ~~~~~~~v~~HEiGHaLG  127 (166)
T d1mmqa_         110 LGINFLYAATHELGHSLG  127 (166)
T ss_dssp             SSEEHHHHHHHHHHHHHT
T ss_pred             ccchhhhhhhhhhccccC
Confidence            345667899999999974