Citrus Sinensis ID: 019837

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQGSCTYYPWI
ccccccEEcccEEEEccccHHHHHHHHHHHHHccccccccEEEEEccccccccccccHHHHHHHHHHHHcEEEEEccccccHHHHHHHHHHcccccccHHHHHHHccEEEEEcEEEcccccccccccccEEEEEccccccccccEEEEccccEEEEEEEEccccccEEEEEEEEEccccEEEEEEccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHccccccccEEEEcccccEEEEEcccccccHHHHHHHcccccEEEEEccc
cccccEEccccEEEEEccHHHHHHHHHHHHHcccccEEccEEEEEccHHHHHHcccHHHHHHHHHHHHHcEEEEcccccccHHHHHHHccccccccHHHHHHHHHccEEEEEEccccccccccccccccEEEEEEcccHHHHcEEEEEcccEEEEEEEEEccccccEEEEEEEEcccEEEEEEEEEEHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHcHHHHHHccccEEEEEHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHcccccEEEEEEccccccEEEEccccccHHHHHHHHcccccccEEEEEc
mafqkikvanpivemdgdeMTRVFWKSIKDKLIFPFLELDIKYfdlglpnrdatddkVTVESAEATLKYNVAIkcatitpdeARVKEFVLKQMwkspngtirnilngtvfrepiicknvprlipgwtkpicigrhafgdqyratdtviqgpgklklvfvpegkdekteLEVYNFTGEGGVALSMYNTDESIRAFAEASMNtayqkkwplylSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGgyvwacknydgdvqsdFLAQGFGSLGLMTSvlvcpdgktieaeaahgtvtrhyrvhqkddqgsctyypwi
mafqkikvanpivemdgdeMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESaeatlkynvaikcatitpDEARVKEFVLkqmwkspngtirnilngtvfrepiICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTayqkkwplylSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAahgtvtrhyrvhqkddqgsctyypwi
MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQGSCTYYPWI
*******VANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQGSCTYYPW*
***Q**KVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQGSCTYYPWI
MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQGSCTYYPWI
***QKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQGSCTYYPWI
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MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKDDQGSCTYYPWI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query335 2.2.26 [Sep-21-2011]
P50217416 Isocitrate dehydrogenase N/A no 0.979 0.788 0.914 0.0
P50218415 Isocitrate dehydrogenase N/A no 0.979 0.790 0.917 0.0
Q40345433 Isocitrate dehydrogenase N/A no 0.979 0.757 0.905 1e-180
Q06197413 Isocitrate dehydrogenase yes no 0.976 0.791 0.905 1e-180
P33198421 Isocitrate dehydrogenase yes no 0.958 0.762 0.732 1e-142
Q4R502452 Isocitrate dehydrogenase N/A no 0.958 0.710 0.732 1e-141
Q04467452 Isocitrate dehydrogenase yes no 0.958 0.710 0.729 1e-141
P48735452 Isocitrate dehydrogenase yes no 0.958 0.710 0.732 1e-141
P54071452 Isocitrate dehydrogenase yes no 0.958 0.710 0.729 1e-141
P56574452 Isocitrate dehydrogenase yes no 0.958 0.710 0.726 1e-140
>sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  637 bits (1644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/328 (91%), Positives = 311/328 (94%)

Query: 1   MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV 60
           MAFQKI V NPIVEMDGDEMTRV WKSIKDKLI PFLELDIKYF LGLP+RDATDDKVTV
Sbjct: 1   MAFQKITVQNPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYFSLGLPHRDATDDKVTV 60

Query: 61  ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120
           ESAEAT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+P
Sbjct: 61  ESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIP 120

Query: 121 RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV 180
           RL+PGWTKPICIGRHAFGDQYRATDTVI+G GKLKLVFVPEG DEKTE EVYNFTG GGV
Sbjct: 121 RLVPGWTKPICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGSDEKTEFEVYNFTGAGGV 180

Query: 181 ALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240
           ALSMYNTDES+R+FAEASMN A+QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK
Sbjct: 181 ALSMYNTDESVRSFAEASMNMAFQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240

Query: 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 300
           +E AGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP
Sbjct: 241 YEEAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 300

Query: 301 DGKTIEAEAAHGTVTRHYRVHQKDDQGS 328
           DGKTIEAEAAHGTVTRHYRVHQK  + S
Sbjct: 301 DGKTIEAEAAHGTVTRHYRVHQKGGETS 328
May supply 2-oxoglutarate for amino acid biosynthesis and ammonia assimilation.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 2
>sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|Q40345|IDHP_MEDSA Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1 Back     alignment and function description
>sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2 Back     alignment and function description
>sp|P33198|IDHP_PIG Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1 Back     alignment and function description
>sp|Q4R502|IDHP_MACFA Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1 Back     alignment and function description
>sp|Q04467|IDHP_BOVIN Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2 Back     alignment and function description
>sp|P48735|IDHP_HUMAN Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2 Back     alignment and function description
>sp|P54071|IDHP_MOUSE Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3 Back     alignment and function description
>sp|P56574|IDHP_RAT Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query335
5764653414 NADP-isocitrate dehydrogenase [Citrus li 0.979 0.792 0.972 0.0
255575226413 NADP-specific isocitrate dehydrogenase, 0.979 0.794 0.948 0.0
213493066414 NADP-dependent isocitrate dehydrogenase 0.979 0.792 0.939 0.0
224079726414 predicted protein [Populus trichocarpa] 0.979 0.792 0.935 0.0
3811007412 NADP specific isocitrate dehydrogenase [ 0.979 0.796 0.942 0.0
2623962412 isocitrate dehydrogenase (NADP+) [Apium 0.979 0.796 0.939 0.0
1750380416 NADP-isocitrate dehydrogenase [Eucalyptu 0.979 0.788 0.932 0.0
75267781420 cytosolic NADP+-isocitrate dehydrogenase 0.979 0.780 0.932 0.0
269994009416 NADP-dependent isocitrate dehydrogenase 0.979 0.788 0.929 0.0
315440250412 NADP-dependent isocitric acid dehydrogen 0.979 0.796 0.929 0.0
>gi|5764653|gb|AAD51361.1|AF176669_1 NADP-isocitrate dehydrogenase [Citrus limon] Back     alignment and taxonomy information
 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/328 (97%), Positives = 324/328 (98%)

Query: 1   MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV 60
           MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV
Sbjct: 1   MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV 60

Query: 61  ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120
           ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP
Sbjct: 61  ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120

Query: 121 RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV 180
           RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV
Sbjct: 121 RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV 180

Query: 181 ALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240
           ALSMYNTDESIR+FAEASMNTAYQKKWPLYLSTKNTILK YDG+FKDIFQEVYEANWKSK
Sbjct: 181 ALSMYNTDESIRSFAEASMNTAYQKKWPLYLSTKNTILKNYDGKFKDIFQEVYEANWKSK 240

Query: 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 300
           FEAAGIWYEHRLIDDMVAYALKSEGGYVWACK+YDG+VQSDFLAQGFGSLGLMTSVLVCP
Sbjct: 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKDYDGNVQSDFLAQGFGSLGLMTSVLVCP 300

Query: 301 DGKTIEAEAAHGTVTRHYRVHQKDDQGS 328
           DGKTIEAEAAHGTVTRHYRVHQK  + S
Sbjct: 301 DGKTIEAEAAHGTVTRHYRVHQKGGETS 328

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255575226|ref|XP_002528517.1| NADP-specific isocitrate dehydrogenase, putative [Ricinus communis] gi|223532077|gb|EEF33886.1| NADP-specific isocitrate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|213493066|dbj|BAG84436.1| NADP-dependent isocitrate dehydrogenase [Passiflora edulis] Back     alignment and taxonomy information
>gi|224079726|ref|XP_002305928.1| predicted protein [Populus trichocarpa] gi|222848892|gb|EEE86439.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|3811007|dbj|BAA34112.1| NADP specific isocitrate dehydrogenase [Daucus carota] Back     alignment and taxonomy information
>gi|2623962|emb|CAA73139.1| isocitrate dehydrogenase (NADP+) [Apium graveolens] Back     alignment and taxonomy information
>gi|1750380|gb|AAB39248.1| NADP-isocitrate dehydrogenase [Eucalyptus globulus] Back     alignment and taxonomy information
>gi|75267781|gb|ABA18651.1| cytosolic NADP+-isocitrate dehydrogenase [Populus tremula x Populus alba] Back     alignment and taxonomy information
>gi|269994009|dbj|BAI50641.1| NADP-dependent isocitrate dehydrogenase [Eucalyptus grandis x Eucalyptus urophylla] Back     alignment and taxonomy information
>gi|315440250|gb|ADU20197.1| NADP-dependent isocitric acid dehydrogenase [Pyrus pyrifolia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query335
TAIR|locus:2009759410 cICDH "cytosolic NADP+-depende 0.973 0.795 0.890 2.5e-161
TAIR|locus:2020128416 ICDH "isocitrate dehydrogenase 0.976 0.786 0.871 7.5e-160
TAIR|locus:2222672485 AT5G14590 [Arabidopsis thalian 0.964 0.665 0.814 3.2e-145
UNIPROTKB|F1PAM3422 IDH2 "Isocitrate dehydrogenase 0.958 0.760 0.732 5e-131
UNIPROTKB|F1SK00413 IDH2 "Isocitrate dehydrogenase 0.958 0.777 0.732 5e-131
UNIPROTKB|P33198421 IDH2 "Isocitrate dehydrogenase 0.958 0.762 0.732 5e-131
UNIPROTKB|P48735452 IDH2 "Isocitrate dehydrogenase 0.958 0.710 0.732 1.7e-130
UNIPROTKB|Q4R502452 IDH2 "Isocitrate dehydrogenase 0.958 0.710 0.732 1.7e-130
UNIPROTKB|Q04467452 IDH2 "Isocitrate dehydrogenase 0.958 0.710 0.729 3.5e-130
MGI|MGI:96414452 Idh2 "isocitrate dehydrogenase 0.958 0.710 0.729 3.5e-130
TAIR|locus:2009759 cICDH "cytosolic NADP+-dependent isocitrate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1571 (558.1 bits), Expect = 2.5e-161, P = 2.5e-161
 Identities = 292/328 (89%), Positives = 311/328 (94%)

Query:     1 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV 60
             MAF+KIKVANPIVEMDGDEMTRV WKSIKDKLI PF+ELDIKYFDLGLP+RDATDDKVT+
Sbjct:     1 MAFEKIKVANPIVEMDGDEMTRVIWKSIKDKLITPFVELDIKYFDLGLPHRDATDDKVTI 60

Query:    61 ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120
             ESAEAT KYNVAIKCATITPDE RV EF LKQMW+SPNGTIRNILNGTVFREPIICKNVP
Sbjct:    61 ESAEATKKYNVAIKCATITPDEGRVTEFGLKQMWRSPNGTIRNILNGTVFREPIICKNVP 120

Query:   121 RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV 180
             +L+PGWTKPICIGRHAFGDQYRATD VI+GPGKL + F  EGKD KTE EV+ FTGEGGV
Sbjct:   121 KLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLTMTF--EGKDGKTETEVFTFTGEGGV 178

Query:   181 ALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240
             A++MYNTDESIRAFA+ASMNTAY+KKWPLYLSTKNTILKKYDGRFKDIFQEVYEA+WKSK
Sbjct:   179 AMAMYNTDESIRAFADASMNTAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEASWKSK 238

Query:   241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 300
             ++AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP
Sbjct:   239 YDAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 298

Query:   301 DGKTIEAEAAHGTVTRHYRVHQKDDQGS 328
             DGKTIEAEAAHGTVTRH+RVHQK  + S
Sbjct:   299 DGKTIEAEAAHGTVTRHFRVHQKGGETS 326
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=IEA;ISS;IMP
GO:0006102 "isocitrate metabolic process" evidence=IEA;IMP
GO:0008152 "metabolic process" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0005507 "copper ion binding" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0048046 "apoplast" evidence=IDA
GO:0010043 "response to zinc ion" evidence=IEP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005829 "cytosol" evidence=IDA;NAS
GO:0006739 "NADP metabolic process" evidence=IMP
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0009506 "plasmodesma" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006970 "response to osmotic stress" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009853 "photorespiration" evidence=RCA
GO:0051049 "regulation of transport" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
TAIR|locus:2020128 ICDH "isocitrate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2222672 AT5G14590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1PAM3 IDH2 "Isocitrate dehydrogenase [NADP]" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SK00 IDH2 "Isocitrate dehydrogenase [NADP]" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P33198 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P48735 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R502 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|Q04467 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:96414 Idh2 "isocitrate dehydrogenase 2 (NADP+), mitochondrial" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4R502IDHP_MACFA1, ., 1, ., 1, ., 4, 20.73290.95820.7101N/Ano
Q04467IDHP_BOVIN1, ., 1, ., 1, ., 4, 20.72980.95820.7101yesno
P65097IDH_MYCTU1, ., 1, ., 1, ., 4, 20.66980.94920.7775yesno
P65098IDH_MYCBO1, ., 1, ., 1, ., 4, 20.66980.94920.7775yesno
P48735IDHP_HUMAN1, ., 1, ., 1, ., 4, 20.73290.95820.7101yesno
Q06197IDHC_SOYBN1, ., 1, ., 1, ., 4, 20.90510.97610.7917yesno
Q75JR2IDHP_DICDI1, ., 1, ., 1, ., 4, 20.66760.96110.7523yesno
P54071IDHP_MOUSE1, ., 1, ., 1, ., 4, 20.72980.95820.7101yesno
O13294IDH2_CANTR1, ., 1, ., 1, ., 4, 20.66360.98800.8053N/Ano
Q6XUZ5IDHC_SHEEP1, ., 1, ., 1, ., 4, 20.70030.94620.7657N/Ano
P21954IDHP_YEAST1, ., 1, ., 1, ., 4, 20.67870.97610.7640yesno
P33198IDHP_PIG1, ., 1, ., 1, ., 4, 20.73290.95820.7624yesno
Q40345IDHP_MEDSA1, ., 1, ., 1, ., 4, 20.90540.97910.7575N/Ano
P50217IDHC_SOLTU1, ., 1, ., 1, ., 4, 20.91460.97910.7884N/Ano
P50218IDHC_TOBAC1, ., 1, ., 1, ., 4, 20.91760.97910.7903N/Ano
Q9Z2K9IDHC_MICME1, ., 1, ., 1, ., 4, 20.70030.94620.7657N/Ano
P56574IDHP_RAT1, ., 1, ., 1, ., 4, 20.72670.95820.7101yesno
O14254IDHP_SCHPO1, ., 1, ., 1, ., 4, 20.67980.97310.7425yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.983
4th Layer1.1.1.420.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
PLN00103410 PLN00103, PLN00103, isocitrate dehydrogenase (NADP 0.0
PLN03065483 PLN03065, PLN03065, isocitrate dehydrogenase (NADP 0.0
PTZ00435413 PTZ00435, PTZ00435, isocitrate dehydrogenase; Prov 0.0
PRK08299402 PRK08299, PRK08299, isocitrate dehydrogenase; Vali 0.0
TIGR00127409 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, 0.0
COG0538407 COG0538, Icd, Isocitrate dehydrogenases [Energy pr 1e-133
pfam00180349 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehy 2e-82
PLN00096393 PLN00096, PLN00096, isocitrate dehydrogenase (NADP 6e-40
COG0473348 COG0473, LeuB, Isocitrate/isopropylmalate dehydrog 2e-05
TIGR02088322 TIGR02088, LEU3_arch, isopropylmalate/isohomocitra 8e-05
PLN00118372 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+ 3e-04
TIGR02924 473 TIGR02924, ICDH_alpha, isocitrate dehydrogenase 7e-04
>gnl|CDD|177720 PLN00103, PLN00103, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information 
 Score =  744 bits (1922), Expect = 0.0
 Identities = 314/328 (95%), Positives = 320/328 (97%)

Query: 1   MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV 60
           MAF+KIKVANPIVEMDGDEMTRV WKSIKDKLIFPFL+LDIKYFDLGLPNRDATDDKVTV
Sbjct: 1   MAFEKIKVANPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTV 60

Query: 61  ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120
           ESAEATLKYNVAIKCATITPDEARVKEF LKQMWKSPNGTIRNILNGTVFREPIICKN+P
Sbjct: 61  ESAEATLKYNVAIKCATITPDEARVKEFGLKQMWKSPNGTIRNILNGTVFREPIICKNIP 120

Query: 121 RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV 180
           RL+PGWTKPICIGRHAFGDQYRATD VI+GPGKLKLVFVPEGKDEKTELEVYNFTG GGV
Sbjct: 121 RLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPEGKDEKTELEVYNFTGAGGV 180

Query: 181 ALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240
           ALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA WKSK
Sbjct: 181 ALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSK 240

Query: 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 300
           FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP
Sbjct: 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 300

Query: 301 DGKTIEAEAAHGTVTRHYRVHQKDDQGS 328
           DGKTIEAEAAHGTVTRHYRVHQK  + S
Sbjct: 301 DGKTIEAEAAHGTVTRHYRVHQKGGETS 328

Length = 410
>gnl|CDD|178617 PLN03065, PLN03065, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|240417 PTZ00435, PTZ00435, isocitrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|236226 PRK08299, PRK08299, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|129233 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|215773 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|177715 PLN00096, PLN00096, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|223549 COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233717 TIGR02088, LEU3_arch, isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>gnl|CDD|215062 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|234062 TIGR02924, ICDH_alpha, isocitrate dehydrogenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 335
COG0473348 LeuB Isocitrate/isopropylmalate dehydrogenase [Ami 100.0
PRK08299402 isocitrate dehydrogenase; Validated 100.0
PLN03065483 isocitrate dehydrogenase (NADP+); Provisional 100.0
PRK08997334 isocitrate dehydrogenase; Provisional 100.0
PTZ00435413 isocitrate dehydrogenase; Provisional 100.0
TIGR00127409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 100.0
PLN00118372 isocitrate dehydrogenase (NAD+) 100.0
PRK03437344 3-isopropylmalate dehydrogenase; Provisional 100.0
PRK14025330 multifunctional 3-isopropylmalate dehydrogenase/D- 100.0
PRK08194352 tartrate dehydrogenase; Provisional 100.0
PLN02329409 3-isopropylmalate dehydrogenase 100.0
TIGR02089352 TTC tartrate dehydrogenase. Tartrate dehydrogenase 100.0
TIGR00169349 leuB 3-isopropylmalate dehydrogenase. This model w 100.0
PRK06451412 isocitrate dehydrogenase; Validated 100.0
PRK09222 482 isocitrate dehydrogenase; Validated 100.0
PRK00772358 3-isopropylmalate dehydrogenase; Provisional 100.0
TIGR02924 473 ICDH_alpha isocitrate dehydrogenase. This family o 100.0
PRK07006409 isocitrate dehydrogenase; Reviewed 100.0
PLN00103410 isocitrate dehydrogenase (NADP+); Provisional 100.0
TIGR02088322 LEU3_arch isopropylmalate/isohomocitrate dehydroge 100.0
PLN00123360 isocitrate dehydrogenase (NAD+) 100.0
TIGR00175333 mito_nad_idh isocitrate dehydrogenase, NAD-depende 100.0
TIGR00183416 prok_nadp_idh isocitrate dehydrogenase, NADP-depen 100.0
PRK07362474 isocitrate dehydrogenase; Validated 100.0
KOG0785365 consensus Isocitrate dehydrogenase, alpha subunit 100.0
PF00180348 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; 100.0
PLN00096393 isocitrate dehydrogenase (NADP+); Provisional 100.0
COG0538407 Icd Isocitrate dehydrogenases [Energy production a 100.0
KOG0784375 consensus Isocitrate dehydrogenase, gamma subunit 100.0
KOG0786363 consensus 3-isopropylmalate dehydrogenase [Amino a 100.0
KOG1526422 consensus NADP-dependent isocitrate dehydrogenase 100.0
TIGR00127409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 90.9
PF04166298 PdxA: Pyridoxal phosphate biosynthetic protein Pdx 86.19
COG1995332 PdxA Pyridoxal phosphate biosynthesis protein [Coe 82.99
PRK00232332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 82.48
PRK03371326 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 82.33
PRK03946307 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 81.67
PRK01909329 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 81.21
PRK03743332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 80.54
PRK02746345 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 80.45
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-100  Score=729.92  Aligned_cols=283  Identities=19%  Similarity=0.162  Sum_probs=252.6

Q ss_pred             ccccEEEECCCCchHHHHHHHHHHHhcCC---CceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCCcch
Q 019837            8 VANPIVEMDGDEMTRVFWKSIKDKLIFPF---LELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR   84 (335)
Q Consensus         8 m~~~I~vipGDGIGpEv~~~~~~~~~~~~---~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~~~~   84 (335)
                      |.++|+||||||||||||+++++++.+..   ++|+|+++++|+++|++||.+||++|+++|+++|++||||+++|....
T Consensus         2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~   81 (348)
T COG0473           2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDP   81 (348)
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCC
Confidence            56899999999999999999997665443   899999999999999999999999999999999999999999994321


Q ss_pred             hhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCC--CCCEEEEeeccCccccccceeeeCCCceeeeeecCC
Q 019837           85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW--TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEG  162 (335)
Q Consensus        85 ~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~--~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~~  162 (335)
                      .     ..+.+|.++.|||+||||||+||+  |++|++.+..  +.|||||||||||+|+|.++....+           
T Consensus        82 ~-----~~~~~~~ll~lRk~l~lyANlRP~--k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~~~-----------  143 (348)
T COG0473          82 L-----PRPERGLLLALRKELDLYANLRPA--KSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRILGG-----------  143 (348)
T ss_pred             C-----CCcccchHHHHHHhcCceeeeeec--ccCCCCCCccCCCccEEEEeeCCCccccCCCccccCC-----------
Confidence            1     124567889999999999999998  7888887765  4799999999999999977531110           


Q ss_pred             CCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccc
Q 019837          163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF  241 (335)
Q Consensus       163 g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~  241 (335)
                      +              +.+.++++|||+++|||+|+|||+|++| +|+||+|||+|||+.++++||++|+||+ ++|    
T Consensus       144 ~--------------eva~~~~~~Tr~~~eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva-~~y----  204 (348)
T COG0473         144 G--------------EVAIDTKVITRKGSERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVA-KEY----  204 (348)
T ss_pred             C--------------eEEEEEEeccHHHHHHHHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHh-hcC----
Confidence            0              1255678999999999999999999999 6999999999999999999999999999 799    


Q ss_pred             cCCCceEeeeeHHHHHHHHHhCCCCc-EEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCccccccc
Q 019837          242 EAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV  320 (335)
Q Consensus       242 ~~p~V~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk  320 (335)
                        |||+++|+|||+++||||++|++| ||||+|||||||||+||+|+|||||+||||+|++..++||||+||||||||  
T Consensus       205 --Pdv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDILSD~aa~l~GslGl~PSAnig~~~~~~lfEPvHGSAPDIA--  280 (348)
T COG0473         205 --PDVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDILSDEAAALTGSLGLAPSANLGDERGPALFEPVHGSAPDIA--  280 (348)
T ss_pred             --CCcchhHHhHHHHHHHHhhCccccCEEEEccchhHHHHhHHHHhcCccccCccCccCCCCCCceeecCCCCccccc--
Confidence              999999999999999999999999 999999999999999999999999999999998422699999999999997  


Q ss_pred             ccCCCCCCCCccccC
Q 019837          321 HQKDDQGSCTYYPWI  335 (335)
Q Consensus       321 ~~aGk~~~aNP~a~I  335 (335)
                         |||+ |||+|||
T Consensus       281 ---Gkgi-ANPiA~I  291 (348)
T COG0473         281 ---GKGI-ANPIATI  291 (348)
T ss_pred             ---CCCc-cChHHHH
Confidence               6676 9999987

>PRK08299 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PRK08997 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PTZ00435 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>PLN00118 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK03437 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>PRK08194 tartrate dehydrogenase; Provisional Back     alignment and domain information
>PLN02329 3-isopropylmalate dehydrogenase Back     alignment and domain information
>TIGR02089 TTC tartrate dehydrogenase Back     alignment and domain information
>TIGR00169 leuB 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PRK06451 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK09222 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK00772 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02924 ICDH_alpha isocitrate dehydrogenase Back     alignment and domain information
>PRK07006 isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>PLN00123 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>PRK07362 isocitrate dehydrogenase; Validated Back     alignment and domain information
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate Back     alignment and domain information
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] Back     alignment and domain information
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional Back     alignment and domain information
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
1lwd_A413 Crystal Structure Of Nadp-Dependent Isocitrate Dehy 1e-143
1t09_A414 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 1e-138
3mas_B419 Crystal Structure Of Heterodimeric R132h Mutant Of 1e-138
3inm_A425 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 1e-137
3map_A422 Crystal Structure Of Homodimeric R132h Mutant Of Hu 1e-137
2cmj_A410 Crystal Structure Of Mouse Cytosolic Isocitrate Deh 1e-136
2qfv_A427 Crystal Structure Of Saccharomyces Cerevesiae Mitoc 1e-132
3us8_A427 Crystal Structure Of An Isocitrate Dehydrogenase Fr 1e-132
4hcx_A409 Structure Of Icdh-1 From M.tuberculosis Complexed W 1e-127
4aoy_A402 Open Ctidh. The Complex Structures Of Isocitrate De 1e-104
1zor_A399 Isocitrate Dehydrogenase From The Hyperthermophile 1e-99
2uxq_A402 Isocitrate Dehydrogenase From The Psychrophilic Bac 2e-89
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate Dehydrogenase From Porcine Heart Mitochondria Length = 413 Back     alignment and structure 
Iteration: 1

 Score =  504 bits (1299), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 236/322 (73%), Positives = 270/322 (83%), Gaps = 1/322 (0%)
Query: 2   AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVE 61
           A Q+IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++
Sbjct: 1   ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID 60
Query: 62  SAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPR 121
           SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PR
Sbjct: 61  SALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPR 120
Query: 122 LIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVA 181
           L+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+      + EVYNF   GGV 
Sbjct: 121 LVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GGVG 179
Query: 182 LSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241
           + MYNTDESI  FA +    A QKKWPLY+STKNTILK YDGRFKDIFQE++E ++K+ F
Sbjct: 180 MGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDF 239
Query: 242 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD 301
           +   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPD
Sbjct: 240 DKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPD 299
Query: 302 GKTIEAEAAHGTVTRHYRVHQK 323
           GKTIEAEAAHGTVTRHYR HQK
Sbjct: 300 GKTIEAEAAHGTVTRHYREHQK 321
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex Nadp Length = 414 Back     alignment and structure
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 419 Back     alignment and structure
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase R132h Mutant In Complex With Nadph, Alpha-Ketoglutarate And Calcium(2+) Length = 425 Back     alignment and structure
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 422 Back     alignment and structure
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate Dehydrogenase Length = 410 Back     alignment and structure
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp(+) Length = 427 Back     alignment and structure
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 427 Back     alignment and structure
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With Nadph & Mn2+ Length = 409 Back     alignment and structure
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate Dehydrogenase From Clostridium Thermocellum And Desulfotalea Psychrophila, Support A New Active Site Locking Mechanism Length = 402 Back     alignment and structure
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile Thermotoga Maritima Length = 399 Back     alignment and structure
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium Desulfotalea Psychrophila: Biochemical Properties And Crystal Structure Analysis Length = 402 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 1e-157
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 1e-156
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 1e-155
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 1e-151
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 1e-149
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 1e-144
1itw_A 741 Isocitrate dehydrogenase; greece KEY motif, oxidor 2e-10
2b0t_A 738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 5e-10
2b0t_A 738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 9e-05
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 1e-06
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 1e-06
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 4e-06
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 1e-05
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 1e-05
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 1e-05
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 1e-05
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 5e-05
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 8e-05
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 9e-05
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 1e-04
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 6e-04
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Length = 413 Back     alignment and structure
 Score =  444 bits (1144), Expect = e-157
 Identities = 237/327 (72%), Positives = 271/327 (82%), Gaps = 1/327 (0%)

Query: 2   AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVE 61
           A Q+IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++
Sbjct: 1   ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID 60

Query: 62  SAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPR 121
           SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PR
Sbjct: 61  SALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPR 120

Query: 122 LIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVA 181
           L+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+      + EVYNF   GGV 
Sbjct: 121 LVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GGVG 179

Query: 182 LSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241
           + MYNTDESI  FA +    A QKKWPLY+STKNTILK YDGRFKDIFQE++E ++K+ F
Sbjct: 180 MGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDF 239

Query: 242 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD 301
           +   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPD
Sbjct: 240 DKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPD 299

Query: 302 GKTIEAEAAHGTVTRHYRVHQKDDQGS 328
           GKTIEAEAAHGTVTRHYR HQK    S
Sbjct: 300 GKTIEAEAAHGTVTRHYREHQKGRPTS 326
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Length = 427 Back     alignment and structure
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Length = 427 Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Length = 402 Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Length = 402 Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Length = 399 Back     alignment and structure
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Length = 741 Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Length = 738 Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Length = 738 Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Length = 349 Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Length = 423 Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Length = 354 Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Length = 496 Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Length = 336 Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Length = 412 Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ... Length = 427 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Length = 435 Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Length = 409 Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Length = 429 Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Length = 333 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB: 3ty3_A Length = 366 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query335
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 100.0
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 100.0
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 100.0
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 100.0
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 100.0
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 100.0
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 100.0
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 100.0
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 100.0
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 100.0
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 100.0
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 100.0
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 100.0
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 100.0
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 100.0
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 100.0
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 100.0
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 100.0
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 100.0
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 100.0
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 100.0
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 100.0
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 100.0
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 100.0
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 100.0
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 100.0
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 100.0
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 100.0
4aty_A349 Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; o 83.14
1yxo_A328 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA 82.76
3lxy_A334 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA 82.47
2hi1_A330 4-hydroxythreonine-4-phosphate dehydrogenase 2; py 82.09
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Back     alignment and structure
Probab=100.00  E-value=2.7e-104  Score=786.75  Aligned_cols=332  Identities=69%  Similarity=1.139  Sum_probs=298.9

Q ss_pred             CCccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCC
Q 019837            2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPD   81 (335)
Q Consensus         2 ~~~~~~m~~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~   81 (335)
                      .|.||||.++|++|||||||||||+++++++.+++++|+|+++++|.+++++||++||++++++|+++|++||||++||.
T Consensus        23 ~~~~i~~~~~I~vipGDGIGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~  102 (427)
T 3us8_A           23 MMAKIKVANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPD  102 (427)
T ss_dssp             --CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCC
T ss_pred             ccccccccceEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCC
Confidence            47899999999999999999999999998887788999999999999999999999999999999999999999999998


Q ss_pred             cchhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCCCCCEEEEeeccCccccccceeeeCCCceeeeeecC
Q 019837           82 EARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPE  161 (335)
Q Consensus        82 ~~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~  161 (335)
                      ..+.+++.+..+|+|+|++|||+||||||+||+.++++|++.++++.||||+||||||+|+|+|+++.++|+.+..|.++
T Consensus       103 ~~~~~e~~l~~~~~s~n~~LRk~LdlyanvRPv~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~l~~~~~  182 (427)
T 3us8_A          103 EGRVEEFKLKKMWKSPNGTIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGE  182 (427)
T ss_dssp             HHHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEET
T ss_pred             ccccccccccccccCchHHHHHHhCCeEEecceeccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCCcceeeeecc
Confidence            76666667777899999999999999999999866899988877889999999999999999999987788766667665


Q ss_pred             CCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccc
Q 019837          162 GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF  241 (335)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY~~~~  241 (335)
                      +| ...+.+.+++++ .+++++++||++++|||+|+||+||++|+++||+|||+|||+.|+|+||++|+|||+++|.++|
T Consensus       183 ~G-~~~~~~~~~~~~-~~va~~~~~T~~~~eRiar~AFe~A~~r~kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~~~  260 (427)
T 3us8_A          183 DG-QTIEHDVYDAPG-AGVALAMYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQF  260 (427)
T ss_dssp             TS-CEEEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHH
T ss_pred             cc-ccccccccccCC-CcEEEEEeeCHHHHHHHHHHHHHHHHHcCCcEEEEECcccchhhhhHHHHHHHHHHHHhCcccc
Confidence            55 212222333332 3566788899999999999999999999999999999999999999999999999955997777


Q ss_pred             cCCCceEeeeeHHHHHHHHHhCCCCcEEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCcccccccc
Q 019837          242 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVH  321 (335)
Q Consensus       242 ~~p~V~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk~  321 (335)
                      .+|+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++.++||||+|||||||+|++
T Consensus       261 ~~~~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~a~fEp~HGSAPd~~~~~  340 (427)
T 3us8_A          261 KAEKLWYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQH  340 (427)
T ss_dssp             HHTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHSCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHH
T ss_pred             CCCCeEEEEEEHHHHHHHHhhCCCCcEEEeCCcCCcHHHHHHHHhcCChhhCceeEECCCCCeEEEeCCCCCcCCccchh
Confidence            77899999999999999999999999999999999999999999999999999999998763489999999999999999


Q ss_pred             cCCCCCCCCccccC
Q 019837          322 QKDDQGSCTYYPWI  335 (335)
Q Consensus       322 ~aGk~~~aNP~a~I  335 (335)
                      ||||+++|||+|+|
T Consensus       341 iAGk~i~ANP~A~I  354 (427)
T 3us8_A          341 QKGEETSTNSIASI  354 (427)
T ss_dssp             HTTCCCCCCCHHHH
T ss_pred             cCCCCceeCHHHHH
Confidence            99999779999986
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ... Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Back     alignment and structure
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400} Back     alignment and structure
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa} Back     alignment and structure
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A Back     alignment and structure
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 335
d1lwda_413 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-105
d1t0la_414 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-104
d1hqsa_423 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Baci 2e-29
d1pb1a_416 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Esch 1e-22
d1vlca_362 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 2e-18
d1itwa_ 740 c.77.1.2 (A:) Monomeric isocitrate dehydrogenase { 4e-14
d1wpwa_336 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 7e-11
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  311 bits (797), Expect = e-105
 Identities = 236/327 (72%), Positives = 270/327 (82%), Gaps = 1/327 (0%)

Query: 2   AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVE 61
           A Q+IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++
Sbjct: 1   ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID 60

Query: 62  SAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPR 121
           SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PR
Sbjct: 61  SALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPR 120

Query: 122 LIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVA 181
           L+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+      + EVYNF    GV 
Sbjct: 121 LVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAG-GVG 179

Query: 182 LSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241
           + MYNTDESI  FA +    A QKKWPLY+STKNTILK YDGRFKDIFQE++E ++K+ F
Sbjct: 180 MGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDF 239

Query: 242 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD 301
           +   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPD
Sbjct: 240 DKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPD 299

Query: 302 GKTIEAEAAHGTVTRHYRVHQKDDQGS 328
           GKTIEAEAAHGTVTRHYR HQK    S
Sbjct: 300 GKTIEAEAAHGTVTRHYREHQKGRPTS 326
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 414 Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Length = 423 Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Length = 416 Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Length = 362 Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 740 Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Length = 336 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query335
d1lwda_413 NADP-dependent isocitrate dehydrogenase {Pig (Sus 100.0
d1w0da_337 3-isopropylmalate dehydrogenase, IPMDH {Mycobacter 100.0
d1hqsa_423 Isocitrate dehydrogenase, ICDH {Bacillus subtilis 100.0
d1cnza_363 3-isopropylmalate dehydrogenase, IPMDH {Salmonella 100.0
d1v53a1356 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c 100.0
d1wpwa_336 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus 100.0
d1vlca_362 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga 100.0
d1a05a_357 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill 100.0
d1pb1a_416 Isocitrate dehydrogenase, ICDH {Escherichia coli [ 100.0
d1g2ua_345 3-isopropylmalate dehydrogenase, IPMDH {Thermus th 100.0
d1t0la_414 NADP-dependent isocitrate dehydrogenase {Human (Ho 100.0
d1itwa_ 740 Monomeric isocitrate dehydrogenase {Azotobacter vi 96.97
d1ptma_329 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 92.3
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.9e-89  Score=677.81  Aligned_cols=331  Identities=71%  Similarity=1.177  Sum_probs=281.4

Q ss_pred             CCccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhhhccCCcccHHHHHHHHhcCeeeecCCCCCC
Q 019837            2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPD   81 (335)
Q Consensus         2 ~~~~~~m~~~I~vipGDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~lkg~~~~p~   81 (335)
                      +.|||||++||++|||||||+++|+.+++.+..++++|+|+++|+|.++|++||+++|+|++++||++|++||||++||+
T Consensus         1 ~~~ki~v~~pIv~l~GDeit~~~~~~i~~~l~~~~~di~~~~~d~G~~~~~~tg~~l~~eaiea~k~~~aiLkGa~~tP~   80 (413)
T d1lwda_           1 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPD   80 (413)
T ss_dssp             CCCCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCC
T ss_pred             CCCcccccCCEEEecCccHHHHHHHHHHHHHccCCCCceEEEEeCCHHHHHHhCCcCcHHHHHHHHHcCEEEECCcCCCC
Confidence            57999999999999999999999999988888888999999999999999999999999999999999999999999997


Q ss_pred             cchhhHHHhhhcCCCcchhHhhhcCceEEeecccccCCCCCCCCCCCCEEEEeeccCccccccceeeeCCCceeeeeecC
Q 019837           82 EARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPE  161 (335)
Q Consensus        82 ~~~~~~~~l~~~~~s~~~~LRk~ldlyanvRPv~~~~~~~~~~~~~~divivREnteg~Y~g~e~~~~~~g~~~~~~~~~  161 (335)
                      ..+.++..+.++|+|+|+.||++||||+|+||+++...++...+++.|+||+||||||+|+|.|+....+......+...
T Consensus        81 ~~~~~~~~~~~~~~s~n~~lR~~ldl~an~RP~~~~~~~~~~~~~~~d~VivREnteg~Y~g~e~~~~~~~~~~i~~~~~  160 (413)
T d1lwda_          81 EARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPK  160 (413)
T ss_dssp             HHHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEET
T ss_pred             ccccccccccccccchhhhHHHhcCCceEEecccccCCCCcCCCCCCCeEEeeccccceeeccceeccCcccceeEEecc
Confidence            65555545556799999999999999999999865333344445678999999999999999999876544333334333


Q ss_pred             CCCccchhhhccccCccceeeeeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhh-hcc
Q 019837          162 GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANW-KSK  240 (335)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~~eY-~~~  240 (335)
                      .|..........+.+ ..++.++++|+.+++||+|+||++|++|+++||++||+|||+.++|+|+++|+||++ +| ..+
T Consensus       161 ~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ria~~af~~a~~~~~~vt~v~K~nvl~~~~glf~~~~~eva~-~~p~~~  238 (413)
T d1lwda_         161 DGSSAKQWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFE-KHYKTD  238 (413)
T ss_dssp             TCCCCEEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHH-HHTHHH
T ss_pred             ccccccccccccccc-cccceeeccccchhhHHHHHHHHHHHhcCcceEEecccceeeehhHHHHHHHHHHHH-Hhcccc
Confidence            332211111222222 456667899999999999999999999999999999999999999999999999995 77 112


Q ss_pred             ccCCCceEeeeeHHHHHHHHHhCCCCcEEEeCCchhhhHHhhhhhhcCccccccccccCCCCCceeeecCCCCccccccc
Q 019837          241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV  320 (335)
Q Consensus       241 ~~~p~V~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaA~l~GslGlapSanig~~~~~~~fEp~HGSAPdiagk  320 (335)
                      +..++|.++++++|+|+|+|+++|+.|||||+|||||||||++|+|+|||||+||+|+|+++...+|||+|||||||+|+
T Consensus       239 ~~~~~I~~~~~~vd~~~~~lv~~p~~~Vivt~NlfGDIlSDlaa~l~GglGl~pSanig~~~~~~~fe~~HGsap~~ag~  318 (413)
T d1lwda_         239 FDKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRE  318 (413)
T ss_dssp             HHHTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHH
T ss_pred             ccccEEEEehhhhhhhhhhhcCCCCCeEEEEccccchhHhhHHHHhcCCCCCCcccccCCCccccccccccccchhhcch
Confidence            22228999999999999999999986699999999999999999999999999999999875457899999999999998


Q ss_pred             -ccCCCCCCCCccccC
Q 019837          321 -HQKDDQGSCTYYPWI  335 (335)
Q Consensus       321 -~~aGk~~~aNP~a~I  335 (335)
                       +++|||+ |||+|||
T Consensus       319 ~~iagk~i-ANP~a~I  333 (413)
T d1lwda_         319 HQKGRPTS-TNPIASI  333 (413)
T ss_dssp             HHTTCCCC-CCCHHHH
T ss_pred             hhcCCccc-cChHHHH
Confidence             7899998 9999986
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure