Citrus Sinensis ID: 019841

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
Protein Sequence
MATLIYNNLCLLSSRPGVKVLSLSRVVSSSEVEVSKRRVLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIAGGVSAWNVFSFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAEAMTMGKSLGSCIDIIEDNIDDTDT
Secondary Structure (PSIPRED)
ccEEEEEcHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccccccHHHHHHccccccccccccccccHHHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEcccccccEEEEEEEEccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHccccccccccccccHHHHHHccccHHHHcccccccHHHHHHHHEEHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccEEccHHHHHHHcccccccccEEEccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
matliynnlcllssrpgvkvlSLSRVvsssevevSKRRVLKQVDEELSKGDERAALALVKdlqgkpgglrcfgaarqipqrlytldelklngietrsllspvdetLGSIERNLQLAAIAGGvsawnvfsfnpqQILYLSLALLFLWTVdsvsynggvgSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGIlpkgytltSLEALKkegslnvqagtafvdfefleevnsgkvsattlnrFSCIALAGVATEYLLYgyaeggladINKLDALLKGlgftqkkaDSQVRWSLLNTVLLLRRHKGARAKLAEAMTMGKSLGSCIDIiedniddtdt
Flexible Loop (DISEMBL)
matliynnlcllssrpgvkvlslsrvvsssevevskrrvlkqvdeelskgdeRAALALVkdlqgkpgglRCFGAARQIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIAGGVSAWNVFSFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGkvsattlnrFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGftqkkadsqvrWSLLNTVLLLRRHKGARAKLAEamtmgkslgscidiiedniddtdt
Low Complexity Region (SEG)
MATLIYNNLCLLSSRPGvkvlslsrvvsssevevskrrvlKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIAGGVSAWNVFSFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAEAMTMGKSLGSCidiiedniddtdt
Disordered region (IsUnstruct)
***LIYNNLCLLSSRPGVKVLSLSRV****************************ALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIAGGVSAWNVFSFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAEAMTMGKSLGSCIDIIE********
Disordered Region (DISOPRED)
*ATLIYNNLCLLSSRPGVK***********************VDEELSKGDERAALALVKDLQGKPGGLRCFGAARQI**************IETRSLLSPVDETLGSIERNLQLAAIAGGVSAWNVFSFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSLEALKKE****VQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFT***ADSQVRWSLLNTVLLLRRHKGARAKLAEAMTMGKSLGSCIDI***N******
Disordered Region (DISEMBL)
MATLIYNNLCLLSSRPGVKVLSL*************RRVLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIAGGVSAWNVFSFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAEAMTMGKSLGSCIDIIEDNIDDTDT
Disordered Region (DISPRO)
MATLIYNNLCLLSSRPGVKVLSLSRVVSSSEVEVSKRRVLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIAGGVSAWNVFSFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAEAMTMGKSLGSCIDIIEDNI*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATLIYNNLCLLSSRPGVKVLSLSRVVSSSEVEVSKRRVLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIAGGVSAWNVFSFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAEAMTMGKSLGSCIDIIEDNIDDTDT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
224123278	330	predicted protein [Populus trichocarpa]	0.928	0.942	0.836	1e-149
118487460	330	unknown [Populus trichocarpa]	0.928	0.942	0.836	1e-149
255542488	337	conserved hypothetical protein [Ricinus	0.892	0.887	0.842	1e-144
124360157	340	Peptidase, cysteine peptidase active sit	0.964	0.95	0.761	1e-143
350537327	326	stress regulated protein [Solanum lycope	0.940	0.966	0.780	1e-142
225451100	332	PREDICTED: uncharacterized protein LOC10	0.988	0.996	0.805	1e-142
58198153	326	stress regulated protein isoform 3 [Sola	0.940	0.966	0.771	1e-141
357512109	347	hypothetical protein MTR_7g114070 [Medic	0.964	0.930	0.745	1e-140
147815273	320	hypothetical protein VITISV_030170 [Viti	0.925	0.968	0.845	1e-140
297808789	341	hypothetical protein ARALYDRAFT_910860 [	0.922	0.906	0.764	1e-140

>gi|224123278|ref|XP_002319039.1| predicted protein [Populus trichocarpa] gi|222857415|gb|EEE94962.1| predicted protein [Populus trichocarpa]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 260/311 (83%), Positives = 289/311 (92%)

Query: 24  SRVVSSSEVEVSKRRVLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLY 83
           S+ +  S V V +++VL+QVD+ELSKGDERAAL+LVKDLQGKPGGLRCFGA RQIPQRLY
Sbjct: 19  SKKIVGSSVGVQRQQVLEQVDKELSKGDERAALSLVKDLQGKPGGLRCFGAGRQIPQRLY 78

Query: 84  TLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIAGGVSAWNVFSFNPQQILYLSLALL 143
           TLDELKLNGIETRSLLSPVD TLG+IER LQLA +AGG++ WN F F+PQQIL  SL LL
Sbjct: 79  TLDELKLNGIETRSLLSPVDATLGAIERTLQLAGVAGGLATWNAFGFSPQQILLFSLGLL 138

Query: 144 FLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSL 203
           FLWT+DSVS+NGG+GSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAY+VGILP+GYTLTSL
Sbjct: 139 FLWTLDSVSFNGGLGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYMVGILPRGYTLTSL 198

Query: 204 EALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGG 263
           EAL+K+GS NVQAGTAFVDF+FLEEVN+GKVSATTLNRFSCIALAGVATEYLL+GYAEGG
Sbjct: 199 EALQKDGSFNVQAGTAFVDFDFLEEVNTGKVSATTLNRFSCIALAGVATEYLLFGYAEGG 258

Query: 264 LADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAEAMTMGKSLGSCI 323
           LADINKLD L+KGLGFTQKKADSQVRWS+LNT+L+LRRH+GAR KLAEAMTMGKS+GSCI
Sbjct: 259 LADINKLDMLIKGLGFTQKKADSQVRWSVLNTILMLRRHEGAREKLAEAMTMGKSVGSCI 318

Query: 324 DIIEDNIDDTD 334
            IIEDNID  D
Sbjct: 319 GIIEDNIDAAD 329

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487460|gb|ABK95557.1| unknown [Populus trichocarpa]

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 260/311 (83%), Positives = 289/311 (92%)

Query: 24  SRVVSSSEVEVSKRRVLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLY 83
           S+ +  S V V +++VL+QVD+ELSKGDERAAL+LVKDLQGKPGGLRCFGA RQIPQRLY
Sbjct: 19  SKKIVGSSVGVQRQQVLEQVDKELSKGDERAALSLVKDLQGKPGGLRCFGAGRQIPQRLY 78

Query: 84  TLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIAGGVSAWNVFSFNPQQILYLSLALL 143
           TLDELKLNGIETRSLLSPVD TLG+IER LQLA +AGG++ WN F F+PQQIL  SL LL
Sbjct: 79  TLDELKLNGIETRSLLSPVDATLGAIERTLQLAGVAGGLATWNAFGFSPQQILLFSLGLL 138

Query: 144 FLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSL 203
           FLWT+DSVS+NGG+GSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAY+VGILP+GYTLTSL
Sbjct: 139 FLWTLDSVSFNGGLGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYMVGILPRGYTLTSL 198

Query: 204 EALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGG 263
           EAL+K+GS NVQAGTAFVDF+FLEEVN+GKVSATTLNRFSCIALAGVATEYLL+GYAEGG
Sbjct: 199 EALQKDGSFNVQAGTAFVDFDFLEEVNTGKVSATTLNRFSCIALAGVATEYLLFGYAEGG 258

Query: 264 LADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAEAMTMGKSLGSCI 323
           LADINKLD L+KGLGFTQKKADSQVRWS+LNT+L+LRRH+GAR KLAEAMTMGKS+GSCI
Sbjct: 259 LADINKLDMLIKGLGFTQKKADSQVRWSVLNTILMLRRHEGAREKLAEAMTMGKSVGSCI 318

Query: 324 DIIEDNIDDTD 334
            IIEDNID  D
Sbjct: 319 GIIEDNIDAAD 329

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542488|ref|XP_002512307.1| conserved hypothetical protein [Ricinus communis] gi|223548268|gb|EEF49759.1| conserved hypothetical protein [Ricinus communis]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 252/299 (84%), Positives = 280/299 (93%)

Query: 36  KRRVLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIET 95
           +++VL+QVD+EL KGDERAALALV+DLQGKP GL+C+GAARQ+PQRLYTLDELKLNGIE 
Sbjct: 38  RQQVLEQVDKELKKGDERAALALVRDLQGKPAGLKCYGAARQVPQRLYTLDELKLNGIEA 97

Query: 96  RSLLSPVDETLGSIERNLQLAAIAGGVSAWNVFSFNPQQILYLSLALLFLWTVDSVSYNG 155
            SLLSPVD TLGSIERNLQL  + GG++AWN F F+PQQI Y SL LLFL T+DSVS+NG
Sbjct: 98  ASLLSPVDATLGSIERNLQLCGLLGGIAAWNTFGFSPQQIFYFSLGLLFLLTLDSVSFNG 157

Query: 156 GVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSLEALKKEGSLNVQ 215
           GVGSLVLDTIGHTFSQKYH+RVIQHEAGHFLIAYLVGILPKGYTL+SLEAL+KEGSLNVQ
Sbjct: 158 GVGSLVLDTIGHTFSQKYHSRVIQHEAGHFLIAYLVGILPKGYTLSSLEALQKEGSLNVQ 217

Query: 216 AGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLK 275
           AGTAFVDFEFLEEVN+GK+SA +LNRFSCIALAGVATEYLLYG+AEGGLADINKLD LLK
Sbjct: 218 AGTAFVDFEFLEEVNTGKLSAMSLNRFSCIALAGVATEYLLYGFAEGGLADINKLDMLLK 277

Query: 276 GLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAEAMTMGKSLGSCIDIIEDNIDDTD 334
           GLGFTQKKADSQVRWS+LNT+L+LRRH GARAKLAEAM+MGKS+GSCI IIEDNI+D D
Sbjct: 278 GLGFTQKKADSQVRWSVLNTILILRRHDGARAKLAEAMSMGKSVGSCISIIEDNINDAD 336

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124360157|gb|ABN08173.1| Peptidase, cysteine peptidase active site [Medicago truncatula]

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/323 (76%), Positives = 286/323 (88%)

Query: 12  LSSRPGVKVLSLSRVVSSSEVEVSKRRVLKQVDEELSKGDERAALALVKDLQGKPGGLRC 71
           L S  G   L+  R+  S++V  S++++L+ VD+EL+KGD+RAALALVKDLQGKP GL+C
Sbjct: 17  LPSSLGQPKLARVRIQCSTKVSSSRQQLLESVDKELTKGDDRAALALVKDLQGKPNGLQC 76

Query: 72  FGAARQIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIAGGVSAWNVFSFN 131
           FGAARQ+PQRLYTLDELKLNGIE  SLLSPVD TLGSIERNL +AAI GG +AWNVF  +
Sbjct: 77  FGAARQVPQRLYTLDELKLNGIEAMSLLSPVDTTLGSIERNLLIAAIVGGFAAWNVFGIS 136

Query: 132 PQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLV 191
            QQI Y+SL LLFLWT+D VS+ GG+GSLV+DTIGH FSQKYHNRVIQHEAGHFLIAYLV
Sbjct: 137 QQQIFYISLGLLFLWTLDLVSFGGGLGSLVVDTIGHKFSQKYHNRVIQHEAGHFLIAYLV 196

Query: 192 GILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVA 251
           GILPKGYTL+SL+ + KEGSLN+QAGTAFVDFEFLEEVNSGKVSATTLN+FSCIALAGV 
Sbjct: 197 GILPKGYTLSSLDGMMKEGSLNIQAGTAFVDFEFLEEVNSGKVSATTLNKFSCIALAGVC 256

Query: 252 TEYLLYGYAEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAE 311
           TEYL+YG++EGGL DI KLD+LL GLGFTQKKADSQVRWS+LNTVLLLRRH+ AR+KLAE
Sbjct: 257 TEYLIYGFSEGGLDDIRKLDSLLNGLGFTQKKADSQVRWSVLNTVLLLRRHEAARSKLAE 316

Query: 312 AMTMGKSLGSCIDIIEDNIDDTD 334
           AM+MG S+GSCIDIIE++I+ +D
Sbjct: 317 AMSMGSSVGSCIDIIENSINVSD 339

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350537327|ref|NP_001233778.1| stress regulated protein [Solanum lycopersicum] gi|58198163|gb|AAW65813.1| stress regulated protein [Solanum lycopersicum]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 246/315 (78%), Positives = 281/315 (89%)

Query: 20  VLSLSRVVSSSEVEVSKRRVLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIP 79
           +L  S + SS+   VS   VL+QVD+EL+KGDERAAL+LVKDLQGKPGGLRCFGAARQ+P
Sbjct: 11  LLCCSELRSSNSRIVSGLSVLEQVDKELTKGDERAALSLVKDLQGKPGGLRCFGAARQVP 70

Query: 80  QRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIAGGVSAWNVFSFNPQQILYLS 139
           QRLY+LDELKLNGIE  SLLSPVD TLG+IERNLQ+AAI  G +AW     +PQQI ++S
Sbjct: 71  QRLYSLDELKLNGIEAISLLSPVDATLGAIERNLQIAAILSGSAAWYALDLSPQQIFFVS 130

Query: 140 LALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYT 199
           L +LFLWT+D VS+NGGVG+LVLDTIGHTFSQKYHNRVIQHEAGHFLIAYL+GILPKGYT
Sbjct: 131 LGVLFLWTLDLVSFNGGVGTLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLLGILPKGYT 190

Query: 200 LTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGY 259
           LTSL+ALKKEGSLN+QAGTAFVD EF+EEVN GKV+AT LNRFSCIALAGVATEYLL+GY
Sbjct: 191 LTSLDALKKEGSLNIQAGTAFVDLEFIEEVNRGKVTATMLNRFSCIALAGVATEYLLFGY 250

Query: 260 AEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAEAMTMGKSL 319
           AEGGL+DIN+LDALLK LGFTQKKADSQVRW++LNT+L+LRRH+ AR+KLAEAMT GKS+
Sbjct: 251 AEGGLSDINQLDALLKSLGFTQKKADSQVRWAVLNTILILRRHEKARSKLAEAMTQGKSV 310

Query: 320 GSCIDIIEDNIDDTD 334
           G CIDIIE +I D D
Sbjct: 311 GVCIDIIEKSISDDD 325

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451100|ref|XP_002266105.1| PREDICTED: uncharacterized protein LOC100267587 [Vitis vinifera] gi|298205011|emb|CBI34318.3| unnamed protein product [Vitis vinifera]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 269/334 (80%), Positives = 303/334 (90%), Gaps = 3/334 (0%)

Query: 1   MATLIYNNLCLLSSRPGVKVLSLSRVVSSSEVEVSKRRVLKQVDEELSKGDERAALALVK 60
           M T++Y     + S P ++V +L R+VSS    VS+ +VL+QVD+EL+KGD+R AL+LVK
Sbjct: 1   MGTVVYR--AAVCSHPRLRVPTL-RIVSSLGTNVSRWQVLEQVDKELAKGDDRTALSLVK 57

Query: 61  DLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIAG 120
           DLQGKP GLRCFGAARQ+PQRLYTLDELKLNGIE  SLLSPVD TLGSIERNLQLAA+ G
Sbjct: 58  DLQGKPDGLRCFGAARQVPQRLYTLDELKLNGIEASSLLSPVDATLGSIERNLQLAAVLG 117

Query: 121 GVSAWNVFSFNPQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQH 180
           G+SAWNVF F+PQQ+L+LSL LLFLWT+D VS+NGGVGSLVLDTIGHTFSQKYHNRVIQH
Sbjct: 118 GLSAWNVFGFSPQQLLFLSLGLLFLWTLDLVSFNGGVGSLVLDTIGHTFSQKYHNRVIQH 177

Query: 181 EAGHFLIAYLVGILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLN 240
           EAGHFLIAYL+GILPKGYTLTSLEAL+KEGSLN+QAGTAFVDFEFLEEVNSGKVSAT LN
Sbjct: 178 EAGHFLIAYLLGILPKGYTLTSLEALQKEGSLNIQAGTAFVDFEFLEEVNSGKVSATMLN 237

Query: 241 RFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLR 300
           RFSCIALAGV TEYLLYGYAEGGLADINKLD LLKGLGFTQKKADSQVRWS+LNTVL+LR
Sbjct: 238 RFSCIALAGVVTEYLLYGYAEGGLADINKLDLLLKGLGFTQKKADSQVRWSVLNTVLILR 297

Query: 301 RHKGARAKLAEAMTMGKSLGSCIDIIEDNIDDTD 334
           R+K AR KLAEAM+MGKS+G+CI +IE+NID+TD
Sbjct: 298 RNKQARGKLAEAMSMGKSVGACIGVIEENIDNTD 331

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|58198153|gb|AAW65807.1| stress regulated protein isoform 3 [Solanum virginianum] gi|58198161|gb|AAW65812.1| stress regulated protein isoform 3 [Solanum virginianum]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 243/315 (77%), Positives = 282/315 (89%)

Query: 20  VLSLSRVVSSSEVEVSKRRVLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIP 79
           +L  S++ SS+   +S   VL+QVD+EL KGDERAAL+LVKDL+GKPGGLRCFGAARQ+P
Sbjct: 11  LLCCSQLRSSNSRILSGLSVLEQVDKELMKGDERAALSLVKDLRGKPGGLRCFGAARQVP 70

Query: 80  QRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIAGGVSAWNVFSFNPQQILYLS 139
           QRLY+LDEL+LNGIET SLLSPVD TLG+IERNLQ+ AI  G +AW     +PQQIL++S
Sbjct: 71  QRLYSLDELRLNGIETVSLLSPVDATLGAIERNLQIVAILSGSAAWYALDLSPQQILFVS 130

Query: 140 LALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYT 199
           L +LFLWT+D VS+NGGVG+LVLDTIGHTFSQKYHNRV QHEAGHFLIAYL+GILPKGYT
Sbjct: 131 LGVLFLWTLDLVSFNGGVGALVLDTIGHTFSQKYHNRVTQHEAGHFLIAYLLGILPKGYT 190

Query: 200 LTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGY 259
           LTSL+ALKK+GSLN+QAGTAFVDFEF+EEVNSGKV+AT LNRFSCIALAGVATEYLL+GY
Sbjct: 191 LTSLDALKKQGSLNIQAGTAFVDFEFIEEVNSGKVTATMLNRFSCIALAGVATEYLLFGY 250

Query: 260 AEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAEAMTMGKSL 319
           AEGGL+DIN+LDALLK LGFTQKKADSQVRW++LNT+L+LRRH+ AR KLAEAMT GKS+
Sbjct: 251 AEGGLSDINQLDALLKSLGFTQKKADSQVRWAVLNTILILRRHEKARVKLAEAMTRGKSV 310

Query: 320 GSCIDIIEDNIDDTD 334
           G CIDIIE +I + D
Sbjct: 311 GVCIDIIEKSISEDD 325

Source: Solanum virginianum

Species: Solanum virginianum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512109|ref|XP_003626343.1| hypothetical protein MTR_7g114070 [Medicago truncatula] gi|355501358|gb|AES82561.1| hypothetical protein MTR_7g114070 [Medicago truncatula]

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/330 (74%), Positives = 286/330 (86%), Gaps = 7/330 (2%)

Query: 12  LSSRPGVKVLSLSRVVSSSEVEVSKRRVLKQVDEELSKGDERAALALVKDLQGKPGGLRC 71
           L S  G   L+  R+  S++V  S++++L+ VD+EL+KGD+RAALALVKDLQGKP GL+C
Sbjct: 17  LPSSLGQPKLARVRIQCSTKVSSSRQQLLESVDKELTKGDDRAALALVKDLQGKPNGLQC 76

Query: 72  FGAARQIPQRLYTLDELKLNGIETRSLLSPVDETLGSIERNLQLAAIAGGVSAWNVFSFN 131
           FGAARQ+PQRLYTLDELKLNGIE  SLLSPVD TLGSIERNL +AAI GG +AWNVF  +
Sbjct: 77  FGAARQVPQRLYTLDELKLNGIEAMSLLSPVDTTLGSIERNLLIAAIVGGFAAWNVFGIS 136

Query: 132 PQQILYLSLALLFLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLV 191
            QQI Y+SL LLFLWT+D VS+ GG+GSLV+DTIGH FSQKYHNRVIQHEAGHFLIAYLV
Sbjct: 137 QQQIFYISLGLLFLWTLDLVSFGGGLGSLVVDTIGHKFSQKYHNRVIQHEAGHFLIAYLV 196

Query: 192 GILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEE-------VNSGKVSATTLNRFSC 244
           GILPKGYTL+SL+ + KEGSLN+QAGTAFVDFEFLEE       VNSGKVSATTLN+FSC
Sbjct: 197 GILPKGYTLSSLDGMMKEGSLNIQAGTAFVDFEFLEEVGCFICSVNSGKVSATTLNKFSC 256

Query: 245 IALAGVATEYLLYGYAEGGLADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKG 304
           IALAGV TEYL+YG++EGGL DI KLD+LL GLGFTQKKADSQVRWS+LNTVLLLRRH+ 
Sbjct: 257 IALAGVCTEYLIYGFSEGGLDDIRKLDSLLNGLGFTQKKADSQVRWSVLNTVLLLRRHEA 316

Query: 305 ARAKLAEAMTMGKSLGSCIDIIEDNIDDTD 334
           AR+KLAEAM+MG S+GSCIDIIE++I+ +D
Sbjct: 317 ARSKLAEAMSMGSSVGSCIDIIENSINVSD 346

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815273|emb|CAN70022.1| hypothetical protein VITISV_030170 [Vitis vinifera]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 262/310 (84%), Positives = 290/310 (93%)

Query: 25  RVVSSSEVEVSKRRVLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYT 84
           R+VSS    VS+ +VL+QVD+EL+KGD+R AL+LVKDLQGKP GLRCFGAARQ+PQRLYT
Sbjct: 10  RIVSSLGTNVSRWQVLEQVDKELAKGDDRTALSLVKDLQGKPDGLRCFGAARQVPQRLYT 69

Query: 85  LDELKLNGIETRSLLSPVDETLGSIERNLQLAAIAGGVSAWNVFSFNPQQILYLSLALLF 144
           LDELKLNGIE  SLLSPVD TLGSIERNLQLAA+ GG+SAWNVF F+PQQ+L+LSL LLF
Sbjct: 70  LDELKLNGIEASSLLSPVDATLGSIERNLQLAAVLGGLSAWNVFGFSPQQLLFLSLGLLF 129

Query: 145 LWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSLE 204
           LWT+D VS+NGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYL+GILPKGYTLTSLE
Sbjct: 130 LWTLDLVSFNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLLGILPKGYTLTSLE 189

Query: 205 ALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGL 264
           AL+KEGSLN+QAGTAFVDFEFLEEVNSGKVSAT LNRFSCIALAGV TEYLLYGYAEGGL
Sbjct: 190 ALQKEGSLNIQAGTAFVDFEFLEEVNSGKVSATMLNRFSCIALAGVVTEYLLYGYAEGGL 249

Query: 265 ADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAEAMTMGKSLGSCID 324
           ADINKLD LLKGLGFTQKKADSQVRWS+LNTVL+LRR+K AR KLAEAM+MGKS+G+CI 
Sbjct: 250 ADINKLDLLLKGLGFTQKKADSQVRWSVLNTVLILRRNKQARGKLAEAMSMGKSVGACIG 309

Query: 325 IIEDNIDDTD 334
           +IE+NID+TD
Sbjct: 310 VIEENIDNTD 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808789|ref|XP_002872278.1| hypothetical protein ARALYDRAFT_910860 [Arabidopsis lyrata subsp. lyrata] gi|297318115|gb|EFH48537.1| hypothetical protein ARALYDRAFT_910860 [Arabidopsis lyrata subsp. lyrata]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 237/310 (76%), Positives = 279/310 (90%), Gaps = 1/310 (0%)

Query: 26  VVSSSEVEVSKRR-VLKQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYT 84
           +V SSE  +S RR VL+QVD +LS GDERAAL+LV+DLQGKP GLRCFGAARQ+PQRLY+
Sbjct: 31  IVCSSETALSTRRQVLEQVDSKLSSGDERAALSLVRDLQGKPDGLRCFGAARQVPQRLYS 90

Query: 85  LDELKLNGIETRSLLSPVDETLGSIERNLQLAAIAGGVSAWNVFSFNPQQILYLSLALLF 144
           L+ELKLNGI   SLLSP D TLGSIERNLQ+A ++GG+ AW  F  + QQ+L+LSL  +F
Sbjct: 91  LEELKLNGINAASLLSPTDATLGSIERNLQIAGVSGGIVAWKAFDLSSQQLLFLSLGFMF 150

Query: 145 LWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSLE 204
           LWT+D VS+NGG+ SLVLDTIGHTFSQ+YHNRV+QHEAGHFL+AYLVGILP+GYTL+SLE
Sbjct: 151 LWTLDLVSFNGGIASLVLDTIGHTFSQRYHNRVVQHEAGHFLVAYLVGILPRGYTLSSLE 210

Query: 205 ALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGL 264
           AL+KEGSLN+QAG+AFVD+EFLEEVNSGKVSAT LNRFSCIALAGVATEYLLYGYAEGGL
Sbjct: 211 ALQKEGSLNIQAGSAFVDYEFLEEVNSGKVSATMLNRFSCIALAGVATEYLLYGYAEGGL 270

Query: 265 ADINKLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAEAMTMGKSLGSCID 324
            DI+KLD L+K LGFTQKKADSQVRWS+LNT+LLLRRH+ AR+KLA+AM+ G+S+GSCI+
Sbjct: 271 DDISKLDGLVKSLGFTQKKADSQVRWSVLNTILLLRRHEIARSKLAQAMSKGESVGSCIE 330

Query: 325 IIEDNIDDTD 334
           IIED+ID +D
Sbjct: 331 IIEDSIDPSD 340

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
TAIR|locus:2181221	341	AT5G27290 [Arabidopsis thalian	0.841	0.826	0.783	6.7e-120
TAIR|locus:2199471	223	AT1G54680 "AT1G54680" [Arabido	0.432	0.650	0.434	4.7e-32
TAIR|locus:2011861	389	AT1G56180 "AT1G56180" [Arabido	0.641	0.552	0.333	2.1e-21
TAIR|locus:2052474	332	AT2G21960 [Arabidopsis thalian	0.776	0.783	0.262	2.1e-12

TAIR|locus:2181221 AT5G27290 [Arabidopsis thaliana (taxid:3702)]

 Score = 1180 (420.4 bits), Expect = 6.7e-120, P = 6.7e-120
 Identities = 221/282 (78%), Positives = 257/282 (91%)

Query:    41 KQVDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGIETRSLLS 100
             +QVD +LS GDERAAL+LVKDLQGKP GLRCFGAARQ+PQRLYTL+ELKLNGI   SLLS
Sbjct:    47 EQVDSKLSSGDERAALSLVKDLQGKPDGLRCFGAARQVPQRLYTLEELKLNGINAASLLS 106

Query:   101 PVDETLGSIERNLQLAAIAGGVSAWNVFSFNPQQILYLSLALLFLWTVDSVSYNGGVGSL 160
             P D TLGSIERNLQ+AA++GG+ AW  F  + QQ+ +L+L  +FLWT+D VS+NGG+GSL
Sbjct:   107 PTDTTLGSIERNLQIAAVSGGIVAWKAFDLSSQQLFFLTLGFMFLWTLDLVSFNGGIGSL 166

Query:   161 VLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSLEALKKEGSLNVQAGTAF 220
             VLDT GHTFSQ+YHNRV+QHEAGHFL+AYLVGILP+GYTL+SLEAL+KEGSLN+QAG+AF
Sbjct:   167 VLDTTGHTFSQRYHNRVVQHEAGHFLVAYLVGILPRGYTLSSLEALQKEGSLNIQAGSAF 226

Query:   221 VDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFT 280
             VD+EFLEEVNSGKVSAT LNRFSCIALAGVATEYLLYGYAEGGL DI+KLD L+K LGFT
Sbjct:   227 VDYEFLEEVNSGKVSATMLNRFSCIALAGVATEYLLYGYAEGGLDDISKLDGLVKSLGFT 286

Query:   281 QKKADSQVRWSLLNTVLLLRRHKGARAKLAEAMTMGKSLGSC 322
             QKKADSQVRWS+LNT+LLLRRH+ AR+KLA+AM+ G+S+GSC
Sbjct:   287 QKKADSQVRWSVLNTILLLRRHEIARSKLAQAMSKGESVGSC 328

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2199471 AT1G54680 "AT1G54680" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 70/161 (43%), Positives = 105/161 (65%)

Query:   177 VIQHEAGHFLIAYLVGILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEV------- 229
             V+QHE+GHFL+ YL+G+LP+ Y + +LEA+++  S NV     FV FEFL++V       
Sbjct:    51 VVQHESGHFLVGYLLGVLPRHYEIPTLEAVRQNVS-NVTGRVEFVGFEFLKQVGAANQLM 109

Query:   230 --------NSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGFTQ 281
                     N G +S+ TLN FSC+ L G+ TE++L+GY+EG  +DI KL+ +L+ LGFT+
Sbjct:   110 KDDVDGQMNQGNISSKTLNNFSCVILGGMVTEHILFGYSEGLYSDIVKLNDVLRWLGFTE 169

Query:   282 KKADSQVRWSLLNTVLLLRRHKGARAKLAEAMTMGKSLGSC 322
              + ++ ++W++ NTV LL  HK AR  LAE M   K + +C
Sbjct:   170 SEKEAHIKWAVSNTVSLLHSHKEARVSLAETMAKAKPISTC 210

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2011861 AT1G56180 "AT1G56180" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 2.1e-21, P = 2.1e-21
 Identities = 77/231 (33%), Positives = 119/231 (51%)

Query:    92 GIETRSLLSPVDETLGSIERNLQLAAIAGGVSAWNVFSFNPQQILYLSLALLFLWTVDSV 151
             G+E   L SP    L     ++ LAA+ GGVS       + +  L + L L +L   DSV
Sbjct:   157 GLEVTKL-SPKKWGLSG-GSSIALAALLGGVSYLLSQEIDVRPNLAVILGLAYL---DSV 211

Query:   152 SYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSLEALKKEGS 211
              + GG     L  +   +   +  R++ HEAGH L+AYL+G   +G  L  + A++    
Sbjct:   212 -FLGGT---CLAQVS-CYWPPHKRRIVVHEAGHLLVAYLMGCPIRGVILDPVVAMQM--G 264

Query:   212 LNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADIN--- 268
             +  QAGT F D +   E+  G++S ++ +R+S +  AG+A E L+YG AEGG  D N   
Sbjct:   265 VQGQAGTQFWDQKMESEIAEGRLSGSSFDRYSMVLFAGIAAEALVYGEAEGGENDENLFR 324

Query:   269 KLDALLKGLGFTQKKADSQVRWSLLNTVLLLRRHKGARAKLAEAMTMGKSL 319
              +  LL+    +  +  +Q RWS+L +  LL+ HK A     EA+ +G  L
Sbjct:   325 SISVLLEP-PLSVAQMSNQARWSVLQSYNLLKWHKAAHRAAVEALQVGSPL 374

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2052474 AT2G21960 [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 76/289 (26%), Positives = 134/289 (46%)

Query:    43 VDEELSKGDERAALALVKDLQGKPGGLRCFGAARQIPQRLYTLDELKLNGI---ETRSLL 99
             ++  ++K D       +  L  + G  + + +   + +R  +L EL   GI   ET ++ 
Sbjct:    56 LESAINKKDSNGVKEALDKLS-EEGWAKKWSSQPYLSRRTTSLRELTTLGIKNAETLAIP 114

Query:   100 SPVDET--LGSIERNLQ-LAAIAGGVSA-WNVFSFNPQQILYLSLALLFLWTVDSVSYNG 155
             S  ++   L ++  +   +A +AG +   W  F   P  +  +SL +L    V SVS   
Sbjct:   115 SVRNDAAFLFTVVGSTGFIAVLAGQLPGDWGFFV--PYLVGSISLVVL---AVGSVS--P 167

Query:   156 GVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPKGYTLTSLEALKKEGSLNVQ 215
             G+    +     TF   Y  R+  HEA HFL+AYL+G+   GY+L     + KE  +N+ 
Sbjct:   168 GLLQAAISGFS-TFFPDYQERIAAHEAAHFLVAYLIGLPILGYSLD----IGKE-HVNL- 220

Query:   216 AGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLK 275
                  +D    + + SGK+ +  L+R + +A+AG+A E L Y    G  AD+  L   + 
Sbjct:   221 -----IDERLAKLIYSGKLDSKELDRLAAVAMAGLAAEGLKYDKVIGQSADLFSLQRFIN 275

Query:   276 GLG--FTQKKADSQVRWSLLNTVLLLRRHKGARAKLAEAMTMGKSLGSC 322
                   + ++  +  RW++L +  LL+ +K     L  AM+   S+  C
Sbjct:   276 RSQPKISNEQQQNLTRWAVLYSASLLKNNKTIHEALMAAMSKNASVLEC 324


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.390    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      335       299   0.00095  115 3  11 22  0.39    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  190 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.64u 0.10s 21.74t   Elapsed:  00:00:01
  Total cpu time:  21.65u 0.10s 21.75t   Elapsed:  00:00:01
  Start:  Fri May 10 09:26:33 2013   End:  Fri May 10 09:26:34 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	335
PF01434	213	Peptidase_M41: Peptidase family M41 This is family	99.96
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	99.94
CHL00176	638	ftsH cell division protein; Validated	99.94
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.94
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.93
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.93
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	99.88
CHL00206	2281	ycf2 Ycf2; Provisional	98.71
cd06163	182	S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (	96.95
cd06164	227	S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P),	96.5
cd06161	208	S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a z	96.21
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	95.94
PRK10779	449	zinc metallopeptidase RseP; Provisional	95.81
PF02163	192	Peptidase_M50: Peptidase family M50; InterPro: IPR	95.57
cd05709	180	S2P-M50 Site-2 protease (S2P) class of zinc metall	95.46
PF13398	200	Peptidase_M50B: Peptidase M50B-like	95.32
cd06162	277	S2P-M50_PDZ_SREBP Sterol regulatory element-bindin	94.37
cd06158	181	S2P-M50_like_1 Uncharacterized homologs of Site-2	93.84
cd06160	183	S2P-M50_like_2 Uncharacterized homologs of Site-2	92.58
cd06159	263	S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs	87.32

>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification

Probab=99.96  E-value=3.5e-29  Score=229.71  Aligned_cols=156  Identities=24%  Similarity=0.310  Sum_probs=122.1

Q ss_pred             HHHHHHhhhcCCCCccccccccCCCCHhHHHHHHHHHHhHHHHHHHhC--CCCceeEecchhHHhhhCccccccceeeec
Q 019841          145 LWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVG--ILPKGYTLTSLEALKKEGSLNVQAGTAFVD  222 (335)
Q Consensus       145 l~aiD~v~lgg~~~~llld~l~r~~s~~~r~RIA~HEAGHaLVAylLg--~PV~~~TI~p~eal~~~G~~~~~gG~~f~~  222 (335)
                      --++|+|.+|.+...       +.+++++|+|+||||||||+|+|+++  .||.++||+|+      |  + .+|++...
T Consensus         6 ~~a~drv~~G~~~~~-------~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~pr------g--~-~~G~~~~~   69 (213)
T PF01434_consen    6 EEAIDRVLMGPEKKS-------RKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPR------G--S-ALGFTQFT   69 (213)
T ss_dssp             HHHHHHHHCCSCCTT-------S---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTT------C--C-CCHCCEEC
T ss_pred             HHHHHHHhcCcCcCC-------CCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecC------C--C-cceeEEec
Confidence            358999999988632       34589999999999999999999998  58999999997      5  2 55655544


Q ss_pred             chhhhhhccccCCHHHHHHHHHHHhhHHHHHHHHhC--Cc-cchhhHHHHHHHHHHh----cCCCH--------------
Q 019841          223 FEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYG--YA-EGGLADINKLDALLKG----LGFTQ--------------  281 (335)
Q Consensus       223 ~~~~~~l~~g~~s~~~L~r~~~VlLAGrAAE~LvyG--~a-~Gg~~Dl~~at~i~~~----lG~s~--------------  281 (335)
                      +..    +....|++++.+.++|+|||||||+++||  +. +|+++|++++|++++.    +||+.              
T Consensus        70 ~~~----~~~~~t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~  145 (213)
T PF01434_consen   70 PDE----DRYIRTRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDE  145 (213)
T ss_dssp             HHT----T-SS-BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-
T ss_pred             cch----hcccccHHHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeecccccc
Confidence            332    23458999999999999999999999999  54 5999999999999864    56642              


Q ss_pred             ------------------HHHHHHHH----HHHHHHHHHHHHcHHHHHHHHHHHHcccchH
Q 019841          282 ------------------KKADSQVR----WSLLNTVLLLRRHKGARAKLAEAMTMGKSLG  320 (335)
Q Consensus       282 ------------------~~~d~evR----~A~~~A~~LLr~hr~aleaLaeaLle~esl~  320 (335)
                                        ..++.+++    .||.+|++||++||+.+++|+++|+++++|.
T Consensus       146 ~~~~~~~~~~~~~s~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~  206 (213)
T PF01434_consen  146 VFLGREWNSRRPMSEETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLS  206 (213)
T ss_dssp             SSS-E---EEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEE
T ss_pred             ccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeC
Confidence                              12344444    6999999999999999999999999999983

; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.6e-27  Score=241.64  Aligned_cols=164  Identities=20%  Similarity=0.259  Sum_probs=140.1

Q ss_pred             HHHHHHHhhhcCCCCccccccccCCCCHhHHHHHHHHHHhHHHHHHHhC--CCCceeEecchhHHhhhCccccccceeee
Q 019841          144 FLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVG--ILPKGYTLTSLEALKKEGSLNVQAGTAFV  221 (335)
Q Consensus       144 ~l~aiD~v~lgg~~~~llld~l~r~~s~~~r~RIA~HEAGHaLVAylLg--~PV~~~TI~p~eal~~~G~~~~~gG~~f~  221 (335)
                      +=|+-|+|.||.+..+.+       ++++.|+..||||+||++||+...  .|++|.||.||      |   -..|.++.
T Consensus       534 LE~akDrIlMG~ERks~~-------i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPR------G---~sLG~t~~  597 (752)
T KOG0734|consen  534 LEFAKDRILMGPERKSMV-------IDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPR------G---PSLGHTSQ  597 (752)
T ss_pred             Hhhhhhheeecccccccc-------cChhhhhhhhhhccCceEEEeecCCCccccceeeccC------C---ccccceee
Confidence            447899999999977654       579999999999999999999986  69999999998      6   36788887


Q ss_pred             cchhhhhhccccCCHHHHHHHHHHHhhHHHHHHHHhCC--c-cchhhHHHHHHHHHHh----cCCCHH------------
Q 019841          222 DFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGY--A-EGGLADINKLDALLKG----LGFTQK------------  282 (335)
Q Consensus       222 ~~~~~~~l~~g~~s~~~L~r~~~VlLAGrAAE~LvyG~--a-~Gg~~Dl~~at~i~~~----lG~s~~------------  282 (335)
                      .|+.    |+..+|+.++..++-|.||||+||+|+||.  + +|+++|++|+|++++.    +|||.+            
T Consensus       598 LPe~----D~~~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~~  673 (752)
T KOG0734|consen  598 LPEK----DRYSITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDNS  673 (752)
T ss_pred             cCcc----chhhHHHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCCC
Confidence            7764    567899999999999999999999999996  3 5999999999998765    687632            


Q ss_pred             ---------HHHHHHH----HHHHHHHHHHHHcHHHHHHHHHHHHcccch--HHHHHHHH
Q 019841          283 ---------KADSQVR----WSLLNTVLLLRRHKGARAKLAEAMTMGKSL--GSCIDIIE  327 (335)
Q Consensus       283 ---------~~d~evR----~A~~~A~~LLr~hr~aleaLaeaLle~esl--~~Ci~~Ie  327 (335)
                               .+|.|++    .+|+||+.||+.|.+.+++||+||++.|||  +|..++++
T Consensus       674 ~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~  733 (752)
T KOG0734|consen  674 SSLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLK  733 (752)
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHh
Confidence                     3677655    799999999999999999999999999999  44445553

>CHL00176 ftsH cell division protein; Validated

Probab=99.94  E-value=1.8e-26  Score=241.56  Aligned_cols=164  Identities=21%  Similarity=0.237  Sum_probs=136.0

Q ss_pred             HHHHHHhhhcCCCCccccccccCCCCHhHHHHHHHHHHhHHHHHHHhC--CCCceeEecchhHHhhhCccccccceeeec
Q 019841          145 LWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVG--ILPKGYTLTSLEALKKEGSLNVQAGTAFVD  222 (335)
Q Consensus       145 l~aiD~v~lgg~~~~llld~l~r~~s~~~r~RIA~HEAGHaLVAylLg--~PV~~~TI~p~eal~~~G~~~~~gG~~f~~  222 (335)
                      -.++|++.+|.+..++        .++++|++|||||||||+|+++++  .||+++||+||      |   ..+|+++..
T Consensus       417 ~~Ai~rv~~g~~~~~~--------~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~pr------g---~~~G~~~~~  479 (638)
T CHL00176        417 DTAIDRVIAGLEGTPL--------EDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPR------G---QAKGLTWFT  479 (638)
T ss_pred             HHHHHHHHhhhccCcc--------ccHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEeec------C---CCCCceEec
Confidence            4578888888775432        378999999999999999999997  68999999998      4   356777766


Q ss_pred             chhhhhhccccCCHHHHHHHHHHHhhHHHHHHHHhCC---ccchhhHHHHHHHHHHh----cCCCH--------------
Q 019841          223 FEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGY---AEGGLADINKLDALLKG----LGFTQ--------------  281 (335)
Q Consensus       223 ~~~~~~l~~g~~s~~~L~r~~~VlLAGrAAE~LvyG~---a~Gg~~Dl~~at~i~~~----lG~s~--------------  281 (335)
                      |+.    +...+|+.++...++++|||||||+++||+   .+|+++|++++|++++.    +||+.              
T Consensus       480 p~~----~~~~~t~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~~g~~~~~~~~~~~~  555 (638)
T CHL00176        480 PEE----DQSLVSRSQILARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRFGMSSIGPISLESNNSTDP  555 (638)
T ss_pred             CCc----ccccccHHHHHHHHHHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCcCCceeecCCCCccc
Confidence            543    346789999999999999999999999994   36999999999999875    46631              


Q ss_pred             -----------------HHHHHHHH----HHHHHHHHHHHHcHHHHHHHHHHHHcccch--HHHHHHHHhh
Q 019841          282 -----------------KKADSQVR----WSLLNTVLLLRRHKGARAKLAEAMTMGKSL--GSCIDIIEDN  329 (335)
Q Consensus       282 -----------------~~~d~evR----~A~~~A~~LLr~hr~aleaLaeaLle~esl--~~Ci~~Ie~~  329 (335)
                                       ..+|.+++    .||.+|++||++||+.+++||++|+++|||  +++.++++..
T Consensus       556 ~~~~~~~~~~~~s~~~~~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~~  626 (638)
T CHL00176        556 FLGRFMQRNSEYSEEIADKIDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQKETIDGDEFREIVNSY  626 (638)
T ss_pred             ccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhhc
Confidence                             13556655    799999999999999999999999999999  6777887653

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.94  E-value=8.5e-26  Score=236.71  Aligned_cols=163  Identities=21%  Similarity=0.237  Sum_probs=132.3

Q ss_pred             HHHHHhhhcCCCCccccccccCCCCHhHHHHHHHHHHhHHHHHHHhC--CCCceeEecchhHHhhhCccccccceeeecc
Q 019841          146 WTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVG--ILPKGYTLTSLEALKKEGSLNVQAGTAFVDF  223 (335)
Q Consensus       146 ~aiD~v~lgg~~~~llld~l~r~~s~~~r~RIA~HEAGHaLVAylLg--~PV~~~TI~p~eal~~~G~~~~~gG~~f~~~  223 (335)
                      -++|++.+|.....       ..+++++|+++||||||||+|+++++  .||+++||+||      |   ..+|+++..|
T Consensus       387 ~a~~~v~~g~~~~~-------~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~pr------g---~~~g~~~~~~  450 (644)
T PRK10733        387 KAKDKIMMGAERRS-------MVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPR------G---RALGVTFFLP  450 (644)
T ss_pred             HHHHHHhccccccc-------ccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEecc------C---CCcceeEECC
Confidence            46777777765332       23578999999999999999999997  69999999998      5   3567776655


Q ss_pred             hhhhhhccccCCHHHHHHHHHHHhhHHHHHHHHhCC---ccchhhHHHHHHHHHHh----cCCCHH--------------
Q 019841          224 EFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGY---AEGGLADINKLDALLKG----LGFTQK--------------  282 (335)
Q Consensus       224 ~~~~~l~~g~~s~~~L~r~~~VlLAGrAAE~LvyG~---a~Gg~~Dl~~at~i~~~----lG~s~~--------------  282 (335)
                      +.    +....|+++|++.++|+|||||||+++||.   .+|+++|++++|++++.    +|||.+              
T Consensus       451 ~~----~~~~~~~~~l~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~~~~~~  526 (644)
T PRK10733        451 EG----DAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVF  526 (644)
T ss_pred             Cc----ccccccHHHHHHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhhcccccccc
Confidence            42    234579999999999999999999999994   36999999999999864    576531              


Q ss_pred             -----------------HHHHHHH----HHHHHHHHHHHHcHHHHHHHHHHHHcccch--HHHHHHHHh
Q 019841          283 -----------------KADSQVR----WSLLNTVLLLRRHKGARAKLAEAMTMGKSL--GSCIDIIED  328 (335)
Q Consensus       283 -----------------~~d~evR----~A~~~A~~LLr~hr~aleaLaeaLle~esl--~~Ci~~Ie~  328 (335)
                                       .+|+++|    .||.+|++||++|++.+++||++|+++|||  ++..+++..
T Consensus       527 lg~~~~~~~~~s~~~~~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~  595 (644)
T PRK10733        527 LGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMAR  595 (644)
T ss_pred             cccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhc
Confidence                             3566655    799999999999999999999999999999  556677764

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.93  E-value=2.9e-25  Score=225.48  Aligned_cols=162  Identities=20%  Similarity=0.236  Sum_probs=129.2

Q ss_pred             HHHHHHhhhcCCCCccccccccCCCCHhHHHHHHHHHHhHHHHHHHhC--CCCceeEecchhHHhhhCccccccceeeec
Q 019841          145 LWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVG--ILPKGYTLTSLEALKKEGSLNVQAGTAFVD  222 (335)
Q Consensus       145 l~aiD~v~lgg~~~~llld~l~r~~s~~~r~RIA~HEAGHaLVAylLg--~PV~~~TI~p~eal~~~G~~~~~gG~~f~~  222 (335)
                      ..+++++.+|.....       ..+++++|+|+||||||||||+|+++  .|+.++||.||      |   ..+|+++..
T Consensus       289 ~~a~~~~~~~~~~~~-------~~~~~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~pr------g---~~~G~~~~~  352 (495)
T TIGR01241       289 EEAIDRVIAGPEKKS-------RVISEKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPR------G---QALGYTQFL  352 (495)
T ss_pred             HHHHHHHhccccccc-------ccccHHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeec------C---CccceEEec
Confidence            446777777765432       34589999999999999999999995  68999999997      4   255665543


Q ss_pred             chhhhhhccccCCHHHHHHHHHHHhhHHHHHHHHhCCcc-chhhHHHHHHHHHHh----cCCCH----------------
Q 019841          223 FEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAE-GGLADINKLDALLKG----LGFTQ----------------  281 (335)
Q Consensus       223 ~~~~~~l~~g~~s~~~L~r~~~VlLAGrAAE~LvyG~a~-Gg~~Dl~~at~i~~~----lG~s~----------------  281 (335)
                      +..    +.+..|+++++++++|+|||||||+++||+++ |+++|++++|+++..    +||+.                
T Consensus       353 ~~~----~~~~~t~~~l~~~i~v~LaGraAE~~~~G~~s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l  428 (495)
T TIGR01241       353 PEE----DKYLYTKSQLLAQIAVLLGGRAAEEIIFGEVTTGASNDIKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFL  428 (495)
T ss_pred             Ccc----ccccCCHHHHHHHHHHHhhHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCcccCceeeccCcccccc
Confidence            321    34678999999999999999999999999975 999999999999763    56643                


Q ss_pred             ---------------HHHHHHH----HHHHHHHHHHHHHcHHHHHHHHHHHHcccchH--HHHHHH
Q 019841          282 ---------------KKADSQV----RWSLLNTVLLLRRHKGARAKLAEAMTMGKSLG--SCIDII  326 (335)
Q Consensus       282 ---------------~~~d~ev----R~A~~~A~~LLr~hr~aleaLaeaLle~esl~--~Ci~~I  326 (335)
                                     ..+|.++    ++||.+|+++|++||+++++||++|+++++|+  |..++|
T Consensus       429 ~~~~~~~~~~s~~~~~~id~~v~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll~~e~L~~~ei~~il  494 (495)
T TIGR01241       429 GRGFAKAKEYSEETAREIDEEVKRIIEEAYKRAKQILTENRDELELLAKALLEKETITREEIKELL  494 (495)
T ss_pred             ccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCeeCHHHHHHHh
Confidence                           1234444    49999999999999999999999999999993  444443

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3.4e-25  Score=229.15  Aligned_cols=155  Identities=24%  Similarity=0.238  Sum_probs=136.3

Q ss_pred             HHHHHHhhhcCCCCccccccccCCCCHhHHHHHHHHHHhHHHHHHHhC--CCCceeEecchhHHhhhCccccccceeeec
Q 019841          145 LWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVG--ILPKGYTLTSLEALKKEGSLNVQAGTAFVD  222 (335)
Q Consensus       145 l~aiD~v~lgg~~~~llld~l~r~~s~~~r~RIA~HEAGHaLVAylLg--~PV~~~TI~p~eal~~~G~~~~~gG~~f~~  222 (335)
                      -.++|+|.+|.+..+       +++++++|+.+|||||||++++++++  +||+|+||+|+      |   ..+|+++..
T Consensus       384 ~ea~drv~~G~erks-------~vise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPr------G---~alG~t~~~  447 (596)
T COG0465         384 EEAIDRVIAGPERKS-------RVISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIPR------G---RALGYTLFL  447 (596)
T ss_pred             HHHHHHHhcCcCcCC-------cccChhhhcchHHHHHHHHHHHHhCCCCcccceeeeccC------c---hhhcchhcC
Confidence            468999999999765       35689999999999999999999997  59999999998      5   467888887


Q ss_pred             chhhhhhccccCCHHHHHHHHHHHhhHHHHHHHHhC-Cc-cchhhHHHHHHHHHHh----cCCCH---------------
Q 019841          223 FEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYG-YA-EGGLADINKLDALLKG----LGFTQ---------------  281 (335)
Q Consensus       223 ~~~~~~l~~g~~s~~~L~r~~~VlLAGrAAE~LvyG-~a-~Gg~~Dl~~at~i~~~----lG~s~---------------  281 (335)
                      |+.    |++.+|++++...++++|||||||+++|| ++ +|+++|++++|.+++.    +|||.               
T Consensus       448 Pe~----d~~l~sk~~l~~~i~~~lgGRaAEel~~g~e~ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~~~fl  523 (596)
T COG0465         448 PEE----DKYLMSKEELLDRIDVLLGGRAAEELIFGYEITTGASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVEGVFL  523 (596)
T ss_pred             Ccc----ccccccHHHHHHHHHHHhCCcHhhhhhhcccccccchhhHHHHHHHHHHhhhhcCcchhhCceehhhcccccc
Confidence            764    57889999999999999999999999999 76 5999999999999874    56653               


Q ss_pred             --------------HHHHHHHH----HHHHHHHHHHHHcHHHHHHHHHHHHcccch
Q 019841          282 --------------KKADSQVR----WSLLNTVLLLRRHKGARAKLAEAMTMGKSL  319 (335)
Q Consensus       282 --------------~~~d~evR----~A~~~A~~LLr~hr~aleaLaeaLle~esl  319 (335)
                                    +.+|.++|    .+|.+++.||.+|++.++.++++|+++||+
T Consensus       524 g~~~~~~~~Se~ta~~ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~~Lle~Eti  579 (596)
T COG0465         524 GRYQKAKNYSEETAQEIDREVKDIIDEAYERAKELLNENKDALETLAEMLLEKETI  579 (596)
T ss_pred             cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence                          24667766    699999999999999999999999999998

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=1.3e-22  Score=213.99  Aligned_cols=164  Identities=23%  Similarity=0.279  Sum_probs=137.5

Q ss_pred             HHHHHHHhhhcCCCCccccccccCCCCHhHHHHHHHHHHhHHHHHHHhC--CCCceeEecchhHHhhhCccccccceeee
Q 019841          144 FLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVG--ILPKGYTLTSLEALKKEGSLNVQAGTAFV  221 (335)
Q Consensus       144 ~l~aiD~v~lgg~~~~llld~l~r~~s~~~r~RIA~HEAGHaLVAylLg--~PV~~~TI~p~eal~~~G~~~~~gG~~f~  221 (335)
                      +..++|++..|-...+       +.+++++++.+|||||||++++++++  +|+.++||+|       | +  ..|+++.
T Consensus       546 ~~~a~~Rvi~G~~~~~-------~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP-------G-q--alG~a~~  608 (774)
T KOG0731|consen  546 LEYAIERVIAGMEKKS-------RVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP-------G-Q--ALGYAQY  608 (774)
T ss_pred             HHHHHHHHhccccccc-------hhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc-------C-C--ccceEEE
Confidence            4568998888866443       34589999999999999999998887  6999999999       5 2  4567666


Q ss_pred             cchhhhhhccccCCHHHHHHHHHHHhhHHHHHHHHhC-Cc-cchhhHHHHHHHHHHh----cCCCH--------------
Q 019841          222 DFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYG-YA-EGGLADINKLDALLKG----LGFTQ--------------  281 (335)
Q Consensus       222 ~~~~~~~l~~g~~s~~~L~r~~~VlLAGrAAE~LvyG-~a-~Gg~~Dl~~at~i~~~----lG~s~--------------  281 (335)
                      .|..     .+.+|+++|...+|++|||||||+++|| ++ +|+.+|++++|++++.    +||++              
T Consensus       609 ~P~~-----~~l~sk~ql~~rm~m~LGGRaAEev~fg~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~~  683 (774)
T KOG0731|consen  609 LPTD-----DYLLSKEQLFDRMVMALGGRAAEEVVFGSEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPGD  683 (774)
T ss_pred             CCcc-----cccccHHHHHHHHHHHhCcchhhheecCCccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCccccc
Confidence            6653     3889999999999999999999999997 55 5999999999999875    56642              


Q ss_pred             ------------HHHHHHHH----HHHHHHHHHHHHcHHHHHHHHHHHHcccch--HHHHHHHHhh
Q 019841          282 ------------KKADSQVR----WSLLNTVLLLRRHKGARAKLAEAMTMGKSL--GSCIDIIEDN  329 (335)
Q Consensus       282 ------------~~~d~evR----~A~~~A~~LLr~hr~aleaLaeaLle~esl--~~Ci~~Ie~~  329 (335)
                                  +.+|.++|    .||.+|.++|++|++.++.+++.|+++|++  +++++++..-
T Consensus       684 ~~~~~p~s~~~~~~Id~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~  749 (774)
T KOG0731|consen  684 ESFRKPYSEKTAQLIDTEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGER  749 (774)
T ss_pred             ccccCccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccC
Confidence                        25777777    499999999999999999999999999998  8888887653

>CHL00206 ycf2 Ycf2; Provisional

Probab=98.71  E-value=1.9e-08  Score=115.14  Aligned_cols=112  Identities=12%  Similarity=0.005  Sum_probs=78.4

Q ss_pred             HHHHHHHhhhcCCCCccccccccCCCCHhHHHHHHHHHHhHHHHHHHhC--CCCceeEecch-hHHhhhCccccccceee
Q 019841          144 FLWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVG--ILPKGYTLTSL-EALKKEGSLNVQAGTAF  220 (335)
Q Consensus       144 ~l~aiD~v~lgg~~~~llld~l~r~~s~~~r~RIA~HEAGHaLVAylLg--~PV~~~TI~p~-eal~~~G~~~~~gG~~f  220 (335)
                      +-.|+|++++|-+..         ..+.+++ +|++||+|||+|+.++.  +||+++||.|. +.+++ |   ...|+++
T Consensus      1870 I~~Al~Rq~~g~~~~---------~~~~~~~-~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~-~---~~yl~~w 1935 (2281)
T CHL00206       1870 IRSALHRQTWDLRSQ---------VRSVQDH-GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKE-G---DSYLYKW 1935 (2281)
T ss_pred             HHHHHHHHHhhhhhc---------ccCcchh-hhhhhHHhHHHHHHhccCCCCcceEEEecCCccccC-c---ccceeEe
Confidence            345789999886532         1234444 48999999999999985  79999999642 22222 1   2335666


Q ss_pred             ecchhhhhhccccCCHHHHHHHHHHHhhHHHHHHHHhCCc-------c--c-hhhHHHHHHHHHH
Q 019841          221 VDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYA-------E--G-GLADINKLDALLK  275 (335)
Q Consensus       221 ~~~~~~~~l~~g~~s~~~L~r~~~VlLAGrAAE~LvyG~a-------~--G-g~~Dl~~at~i~~  275 (335)
                      ..+.      +..+++.++..+++++|||+|||++.|...       +  | ..+|...+-.++.
T Consensus      1936 yle~------~~~mkk~tiL~~Il~cLAGraAedlwf~~~~~~~n~It~yg~vEnD~~La~glLe 1994 (2281)
T CHL00206       1936 YFEL------GTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLE 1994 (2281)
T ss_pred             ecCC------cccCCHHHHHHHHHHHhhhhhhhhhccCcchhhhcCcccccchhhhhHHhHhHHH
Confidence            5432      257889999999999999999999999632       1  2 2567777766655

>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=96.95  E-value=0.0015  Score=59.40  Aligned_cols=24  Identities=38%  Similarity=0.801  Sum_probs=21.3

Q ss_pred             HHHHHHhHHHHHHHhCCCCceeEe
Q 019841          177 VIQHEAGHFLIAYLVGILPKGYTL  200 (335)
Q Consensus       177 IA~HEAGHaLVAylLg~PV~~~TI  200 (335)
                      |..||.||+++|...|.+|.+++|
T Consensus        12 v~iHElGH~~~Ar~~Gv~v~~f~i   35 (182)
T cd06163          12 IFVHELGHFLVAKLFGVKVEEFSI   35 (182)
T ss_pred             HHHHHHHHHHHHHHcCCeeeEeee
Confidence            789999999999999999988443

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.

>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=96.50  E-value=0.004  Score=58.36  Aligned_cols=60  Identities=33%  Similarity=0.353  Sum_probs=44.9

Q ss_pred             HHHHHHHhHHHHHHHhCCCCceeEecchhHHhhhCccccccceeeecchhhhhhccccCCHHHHHHHHHHHhhHHHHHHH
Q 019841          176 RVIQHEAGHFLIAYLVGILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYL  255 (335)
Q Consensus       176 RIA~HEAGHaLVAylLg~PV~~~TI~p~eal~~~G~~~~~gG~~f~~~~~~~~l~~g~~s~~~L~r~~~VlLAGrAAE~L  255 (335)
                      -+..||-||+++|..+|.|++++++.|.      |      |++..++..        .++   .+...|.+||-++.-+
T Consensus        55 ~v~iHElgH~~~A~~~G~~v~~i~l~p~------G------g~~~~~~~~--------~~~---~~~~~IalAGPl~Nll  111 (227)
T cd06164          55 SVLLHELGHSLVARRYGIPVRSITLFLF------G------GVARLEREP--------ETP---GQEFVIAIAGPLVSLV  111 (227)
T ss_pred             HHHHHHHHHHHHHHHcCCeECeEEEEee------e------EEEEecCCC--------CCH---HHHhhhhhhHHHHHHH
Confidence            4789999999999999999999999986      4      444332211        132   4567899999999877


Q ss_pred             HhC
Q 019841          256 LYG  258 (335)
Q Consensus       256 vyG  258 (335)
                      ...
T Consensus       112 la~  114 (227)
T cd06164         112 LAL  114 (227)
T ss_pred             HHH
Confidence            654

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha

>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=96.21  E-value=0.0054  Score=56.49  Aligned_cols=60  Identities=38%  Similarity=0.458  Sum_probs=43.8

Q ss_pred             HHHHHHHhHHHHHHHhCCCCceeEecchhHHhhhCccccccceeeecchhhhhhccccCCHHHHHHHHHHHhhHHHHHHH
Q 019841          176 RVIQHEAGHFLIAYLVGILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYL  255 (335)
Q Consensus       176 RIA~HEAGHaLVAylLg~PV~~~TI~p~eal~~~G~~~~~gG~~f~~~~~~~~l~~g~~s~~~L~r~~~VlLAGrAAE~L  255 (335)
                      -+..||-||+++|..+|.|++++++.|.      |      |....+..       .. +   -.+...|.+||-.+.-+
T Consensus        40 ~v~iHElgH~~~A~~~G~~v~~i~l~p~------G------g~~~~~~~-------~~-~---~~~~~lIalAGPl~n~~   96 (208)
T cd06161          40 SVLLHELGHALVARRYGIRVRSITLLPF------G------GVAELEEE-------PE-T---PKEEFVIALAGPLVSLL   96 (208)
T ss_pred             HHHHHHHHHHHHHHHcCCCccceEEEee------e------eeeeeccC-------CC-C---hhHheeeeeehHHHHHH
Confidence            4789999999999999999999999986      4      32222211       11 2   24566788999999877


Q ss_pred             HhC
Q 019841          256 LYG  258 (335)
Q Consensus       256 vyG  258 (335)
                      +..
T Consensus        97 la~   99 (208)
T cd06161          97 LAG   99 (208)
T ss_pred             HHH
Confidence            654

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.

>TIGR00054 RIP metalloprotease RseP

Probab=95.94  E-value=0.0066  Score=61.52  Aligned_cols=22  Identities=45%  Similarity=0.653  Sum_probs=19.9

Q ss_pred             HHHHHHHhHHHHHHHhCCCCce
Q 019841          176 RVIQHEAGHFLIAYLVGILPKG  197 (335)
Q Consensus       176 RIA~HEAGHaLVAylLg~PV~~  197 (335)
                      -|..||.||+|+|...|..|.+
T Consensus        16 ~v~~HE~gH~~~a~~~g~~v~~   37 (420)
T TIGR00054        16 LIFVHELGHFLAARLCGIKVER   37 (420)
T ss_pred             HHHHHhHHHHHHHHHcCCEEEE
Confidence            3889999999999999988875

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=95.81  E-value=0.01  Score=60.63  Aligned_cols=26  Identities=27%  Similarity=0.523  Sum_probs=23.4

Q ss_pred             HHHHHHHhHHHHHHHhCCCCceeEec
Q 019841          176 RVIQHEAGHFLIAYLVGILPKGYTLT  201 (335)
Q Consensus       176 RIA~HEAGHaLVAylLg~PV~~~TI~  201 (335)
                      -|.+||-||||+|.+.|+.|.+++|.
T Consensus        17 li~vHElGHfl~Ar~~gv~V~~FsiG   42 (449)
T PRK10779         17 LITVHEFGHFWVARRCGVRVERFSIG   42 (449)
T ss_pred             HHHHHHHHHHHHHHHcCCeeeEEEee
Confidence            38899999999999999999887775

>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.57  E-value=0.012  Score=52.42  Aligned_cols=25  Identities=32%  Similarity=0.359  Sum_probs=18.0

Q ss_pred             HHHHHHhHHHHHHHhCCCCceeEec
Q 019841          177 VIQHEAGHFLIAYLVGILPKGYTLT  201 (335)
Q Consensus       177 IA~HEAGHaLVAylLg~PV~~~TI~  201 (335)
                      +..||.||+++|+..|+++.++++.
T Consensus        10 i~~HE~gH~~~a~~~G~~~~~~~~~   34 (192)
T PF02163_consen   10 IVLHELGHALAARLYGDKVPRFEGG   34 (192)
T ss_dssp             HHHHHHHHHHHHHTTT--B--EEE-
T ss_pred             ccccccccccccccccccccccccc
Confidence            6899999999999999988888543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.

>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=95.46  E-value=0.011  Score=52.42  Aligned_cols=24  Identities=33%  Similarity=0.472  Sum_probs=20.2

Q ss_pred             HHHHHHhHHHHHHHhCCCCceeEe
Q 019841          177 VIQHEAGHFLIAYLVGILPKGYTL  200 (335)
Q Consensus       177 IA~HEAGHaLVAylLg~PV~~~TI  200 (335)
                      +..||.||+++|+..|+++.+.++
T Consensus        11 i~iHE~gH~~~A~~~G~~~~~~~~   34 (180)
T cd05709          11 VTVHELGHALVARRLGVKVARFSG   34 (180)
T ss_pred             HHHHHHHHHHHHHHcCCCchheee
Confidence            789999999999999997755443

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin

>PF13398 Peptidase_M50B: Peptidase M50B-like

Probab=95.32  E-value=0.02  Score=52.58  Aligned_cols=27  Identities=41%  Similarity=0.411  Sum_probs=25.3

Q ss_pred             HHHHHHhHHHHHHHhCCCCceeEecch
Q 019841          177 VIQHEAGHFLIAYLVGILPKGYTLTSL  203 (335)
Q Consensus       177 IA~HEAGHaLVAylLg~PV~~~TI~p~  203 (335)
                      +..||.||++++.+.|-.++++++.|.
T Consensus        25 t~~HE~gHal~a~l~G~~v~~i~l~~~   51 (200)
T PF13398_consen   25 TFVHELGHALAALLTGGRVKGIVLFPD   51 (200)
T ss_pred             HHHHHHHHHHHHHHhCCCcceEEEEeC
Confidence            799999999999999999999999873

>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism

Probab=94.37  E-value=0.072  Score=51.77  Aligned_cols=66  Identities=21%  Similarity=0.164  Sum_probs=44.3

Q ss_pred             HHHHHHhHHHHHHHhCCCCceeEecchhHHhhhCccccccceeeecchhhhhhccccCCHHHHHHHHHHHhhHHHHHHHH
Q 019841          177 VIQHEAGHFLIAYLVGILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLL  256 (335)
Q Consensus       177 IA~HEAGHaLVAylLg~PV~~~TI~p~eal~~~G~~~~~gG~~f~~~~~~~~l~~g~~s~~~L~r~~~VlLAGrAAE~Lv  256 (335)
                      +..||-||+++|...|++|+++.+.+.-        -..+|  |.++.+++ +  ...++   .+++.|.+||.++.-+.
T Consensus       138 vvvHElgHal~A~~~gi~V~~iGl~l~~--------~~pGa--~ve~~~e~-~--~~~~~---~~~l~Ia~AGp~~NlvL  201 (277)
T cd06162         138 GVVHEMGHGVAAVREQVRVNGFGIFFFI--------IYPGA--YVDLFTDH-L--NLISP---VQQLRIFCAGVWHNFVL  201 (277)
T ss_pred             HHHHHHHHHHHHHHcCCeeceEEEeeee--------ccCee--EEeecccc-c--ccCCh---hhhhheehhhHHHHHHH
Confidence            5699999999999999999999877540        01133  44443211 1  12333   34778999999988766


Q ss_pred             hC
Q 019841          257 YG  258 (335)
Q Consensus       257 yG  258 (335)
                      -.
T Consensus       202 a~  203 (277)
T cd06162         202 GL  203 (277)
T ss_pred             HH
Confidence            54

In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.

>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=93.84  E-value=0.071  Score=48.30  Aligned_cols=77  Identities=19%  Similarity=0.222  Sum_probs=42.7

Q ss_pred             HHHHHHhHHHHHHHhCCCCc----eeEecchhHHhhhCcccc----ccceeeecchhhhhhccccCCHHHHHHHHHHHhh
Q 019841          177 VIQHEAGHFLIAYLVGILPK----GYTLTSLEALKKEGSLNV----QAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALA  248 (335)
Q Consensus       177 IA~HEAGHaLVAylLg~PV~----~~TI~p~eal~~~G~~~~----~gG~~f~~~~~~~~l~~g~~s~~~L~r~~~VlLA  248 (335)
                      +..||-||+++|+..|++..    ..|+.|..-+---|+.-.    ..|.++..|.+...   ... +..-.+...|.+|
T Consensus        12 i~~HE~aHa~~A~~~Gd~t~~~~Grltlnp~~hid~~g~l~~~~~~~~~~G~a~p~~~~~---~~~-~~~r~~~~~valA   87 (181)
T cd06158          12 ITLHEFAHAYVAYRLGDPTARRAGRLTLNPLAHIDPIGTIILPLLLPFLFGWAKPVPVNP---RNF-KNPRRGMLLVSLA   87 (181)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHcCceecCcHHhcCcchHHHHHHHHHhCeEEecccccCh---Hhh-cccHhhHhhhhhh
Confidence            67999999999999998643    467777521111111100    00333443332111   111 1122456679999


Q ss_pred             HHHHHHHHh
Q 019841          249 GVATEYLLY  257 (335)
Q Consensus       249 GrAAE~Lvy  257 (335)
                      |-++.-+..
T Consensus        88 GP~~n~~la   96 (181)
T cd06158          88 GPLSNLLLA   96 (181)
T ss_pred             hHHHHHHHH
Confidence            999987554

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.

>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=92.58  E-value=0.11  Score=47.45  Aligned_cols=27  Identities=26%  Similarity=0.244  Sum_probs=24.9

Q ss_pred             HHHHHHHhHHHHHHHhCCCCceeEecc
Q 019841          176 RVIQHEAGHFLIAYLVGILPKGYTLTS  202 (335)
Q Consensus       176 RIA~HEAGHaLVAylLg~PV~~~TI~p  202 (335)
                      -+..||.||+++|...|+++.+..+.|
T Consensus        43 ~l~iHElgH~~~A~~~G~~~~~~~l~P   69 (183)
T cd06160          43 ILGIHEMGHYLAARRHGVKASLPYFIP   69 (183)
T ss_pred             HHHHHHHHHHHHHHHCCCCccceeeee
Confidence            478999999999999999999988888

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.

>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=87.32  E-value=0.28  Score=47.20  Aligned_cols=66  Identities=26%  Similarity=0.211  Sum_probs=39.7

Q ss_pred             HHHHHHhHHHHHHHhCCCCceeEecchhHHhhhCccccccceeeecchhhhhhccccCCHHHHHHHHHHHhhHHHHHHHH
Q 019841          177 VIQHEAGHFLIAYLVGILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYLL  256 (335)
Q Consensus       177 IA~HEAGHaLVAylLg~PV~~~TI~p~eal~~~G~~~~~gG~~f~~~~~~~~l~~g~~s~~~L~r~~~VlLAGrAAE~Lv  256 (335)
                      +..||-||+++|...|++|+++.+.-.      . . --||  |..++..   +..+.+   -.++..|.+||-.+.-+.
T Consensus       121 v~iHElgHa~~Ar~~G~~V~~iGl~l~------~-i-p~Gg--~v~~~~~---~~~~~~---~~~~~~Ia~AGP~~Nlvl  184 (263)
T cd06159         121 VVVHELSHGILARVEGIKVKSGGLLLL------I-I-PPGA--FVEPDEE---ELNKAD---RRIRLRIFAAGVTANFVV  184 (263)
T ss_pred             HHHHHHHHHHHHHHcCCEECchhHHHH------h-h-hcEE--EEEecch---hhccCC---hhheeeeeeehHHHHHHH
Confidence            779999999999999999887654200      0 0 0123  4443221   111122   235667888998888655


Q ss_pred             hC
Q 019841          257 YG  258 (335)
Q Consensus       257 yG  258 (335)
                      ..
T Consensus       185 a~  186 (263)
T cd06159         185 AL  186 (263)
T ss_pred             HH
Confidence            43

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	335
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-13

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.3 bits (166), Expect = 9e-13
 Identities = 54/342 (15%), Positives = 109/342 (31%), Gaps = 81/342 (23%)

Query: 6   YNNLCLL------SSR------PGVKVLSLSR---VVSSSEVEVSKRRVLKQVDEELSKG 50
           Y N CLL      +++         K+L  +R   V        +    L      L+  
Sbjct: 243 YEN-CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 51  DERAALALV-----KDL-----QGKPGGLRCFGAA-RQIPQRL-----YTLDELKLNGIE 94
           + ++ L        +DL        P  L     + R              D+L    IE
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT-TIIE 360

Query: 95  TRSL--LSPVD-----ETLGSIERNLQLAAIAGGV--SAW-NVFSFNPQQIL--YLSLAL 142
           + SL  L P +     + L     +     I   +    W +V   +   ++      +L
Sbjct: 361 S-SLNVLEPAEYRKMFDRLSVFPPSAH---IPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 143 LFLWTVDSVSYNGGVGSLVLDTIGHTFSQKY-HNRVIQH-------EAGHFLIAYLVG-- 192
           +     +S      + S+ L+      ++   H  ++ H       ++   +  YL    
Sbjct: 417 VEKQPKESTIS---IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 193 ---ILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAG 249
              I   G+ L ++E  ++           F+DF FLE     K+   +    +  ++  
Sbjct: 474 YSHI---GHHLKNIEHPERMTLFR----MVFLDFRFLE----QKIRHDSTAWNASGSILN 522

Query: 250 VATEYLLYGYAEGGLADI-NKLDALLKGLG-FTQKKADSQVR 289
              +   Y   +  + D   K + L+  +  F  K  ++ + 
Sbjct: 523 TLQQLKFY---KPYICDNDPKYERLVNAILDFLPKIEENLIC 561

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	335
2di4_A	238	Zinc protease, cell division protein FTSH homolog;	100.0
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.94
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.92
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	95.94

>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1

Probab=100.00  E-value=1.9e-34  Score=268.49  Aligned_cols=151  Identities=15%  Similarity=0.187  Sum_probs=119.9

Q ss_pred             cCCCCHhHHHHHHHHHHhHHHHHHHhC--CCCceeEecchhHHhhhCccccccceeeecchhhhhhccccCCHHHHHHHH
Q 019841          166 GHTFSQKYHNRVIQHEAGHFLIAYLVG--ILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFS  243 (335)
Q Consensus       166 ~r~~s~~~r~RIA~HEAGHaLVAylLg--~PV~~~TI~p~eal~~~G~~~~~gG~~f~~~~~~~~l~~g~~s~~~L~r~~  243 (335)
                      ++.+|+++|++|||||||||||||+++  +||++|||+||      |   ..+|+++..|+.    +++.+|+++|.+.+
T Consensus         8 ~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPR------G---~alG~t~~~P~e----d~~~~tk~~l~~~i   74 (238)
T 2di4_A            8 HMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPR------G---MALGVTQQLPIE----DKHIYDKKDLYNKI   74 (238)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC-----------------------------CCCCBHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeec------C---CcceEEEeCCcc----cccccCHHHHHHHH
Confidence            356799999999999999999999998  79999999998      5   356777655442    46788999999999


Q ss_pred             HHHhhHHHHHHHHh--CCc-cchhhHHHHHHHHHHh----cCCCH-----------------------------HHHHHH
Q 019841          244 CIALAGVATEYLLY--GYA-EGGLADINKLDALLKG----LGFTQ-----------------------------KKADSQ  287 (335)
Q Consensus       244 ~VlLAGrAAE~Lvy--G~a-~Gg~~Dl~~at~i~~~----lG~s~-----------------------------~~~d~e  287 (335)
                      +|+|||||||+++|  |++ +|++||++++|++++.    +|||.                             ..+|.+
T Consensus        75 ~v~LgGRaAEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~iD~E  154 (238)
T 2di4_A           75 LVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEE  154 (238)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCccccccccccccccCHHHHHHHHHH
Confidence            99999999999999  664 6999999999998764    67764                             135666


Q ss_pred             HH----HHHHHHHHHHHHcHHHHHHHHHHHHcccch--HHHHHHHHhh
Q 019841          288 VR----WSLLNTVLLLRRHKGARAKLAEAMTMGKSL--GSCIDIIEDN  329 (335)
Q Consensus       288 vR----~A~~~A~~LLr~hr~aleaLaeaLle~esl--~~Ci~~Ie~~  329 (335)
                      +|    +||.+|++||++||+.+++||++|+++|||  ++|.++|+..
T Consensus       155 v~~il~~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~  202 (238)
T 2di4_A          155 VKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLY  202 (238)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccC
Confidence            65    899999999999999999999999999999  8888998764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.94  E-value=6.3e-26  Score=228.86  Aligned_cols=166  Identities=19%  Similarity=0.216  Sum_probs=122.6

Q ss_pred             HHHHHHhhhcCCCCccccccccCCCCHhHHHHHHHHHHhHHHHHHHhC--CCCceeEecchhHHhhhCccccccceeeec
Q 019841          145 LWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVG--ILPKGYTLTSLEALKKEGSLNVQAGTAFVD  222 (335)
Q Consensus       145 l~aiD~v~lgg~~~~llld~l~r~~s~~~r~RIA~HEAGHaLVAylLg--~PV~~~TI~p~eal~~~G~~~~~gG~~f~~  222 (335)
                      ..++|++..|.+...       ..++++++++++|||+||++++++++  .|++++||+|+      |  ...+|+++..
T Consensus       250 ~~al~~v~~~~~~~~-------~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~pr------g--~~alg~~~~~  314 (476)
T 2ce7_A          250 EEAIDRVIAGPARKS-------LLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPR------G--YKALGYTLHL  314 (476)
T ss_dssp             HHHHHHHC---------------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC---------------------
T ss_pred             HHHHHHHhcCccccc-------hhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecC------c--ccccceEEEc
Confidence            456778777654322       34689999999999999999999996  79999999997      4  1356766655


Q ss_pred             chhhhhhccccCCHHHHHHHHHHHhhHHHHHHHHhCCcc-chhhHHHHHHHHHHh----cCCCH----------------
Q 019841          223 FEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYAE-GGLADINKLDALLKG----LGFTQ----------------  281 (335)
Q Consensus       223 ~~~~~~l~~g~~s~~~L~r~~~VlLAGrAAE~LvyG~a~-Gg~~Dl~~at~i~~~----lG~s~----------------  281 (335)
                      |+.    +.+.+|+++|.++++|+|||||||+++||+++ |++||++++|++++.    +|||.                
T Consensus       315 p~~----~~~~~~~~~l~~~i~~~l~Gr~ae~~~~g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~  390 (476)
T 2ce7_A          315 PEE----DKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFL  390 (476)
T ss_dssp             --------CCSCBHHHHHHHHHHHTHHHHHHHHHHSSCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------
T ss_pred             Ccc----cccccCHHHHHHHHHHHHhHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCccccc
Confidence            432    45778999999999999999999999999974 999999999999764    57653                


Q ss_pred             ---------------HHHHHHHH----HHHHHHHHHHHHcHHHHHHHHHHHHcccch--HHHHHHHHhh
Q 019841          282 ---------------KKADSQVR----WSLLNTVLLLRRHKGARAKLAEAMTMGKSL--GSCIDIIEDN  329 (335)
Q Consensus       282 ---------------~~~d~evR----~A~~~A~~LLr~hr~aleaLaeaLle~esl--~~Ci~~Ie~~  329 (335)
                                     ..+|++++    .||.+|++||++|++.++++|++|+++|||  +++.++++..
T Consensus       391 ~~~~~~~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~  459 (476)
T 2ce7_A          391 GKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSEE  459 (476)
T ss_dssp             ------CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC--
T ss_pred             cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhccc
Confidence                           13556655    799999999999999999999999999999  7777877653

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.92  E-value=1.1e-24  Score=220.96  Aligned_cols=164  Identities=22%  Similarity=0.195  Sum_probs=135.4

Q ss_pred             HHHHHHhhhcCCCCccccccccCCCCHhHHHHHHHHHHhHHHHHHHhC--CCCceeEecchhHHhhhCccccccceeeec
Q 019841          145 LWTVDSVSYNGGVGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLVG--ILPKGYTLTSLEALKKEGSLNVQAGTAFVD  222 (335)
Q Consensus       145 l~aiD~v~lgg~~~~llld~l~r~~s~~~r~RIA~HEAGHaLVAylLg--~PV~~~TI~p~eal~~~G~~~~~gG~~f~~  222 (335)
                      -.++|++..|....+       +.++++++++++|||+||++++|+++  .||+++||+|+      |   ...|+++  
T Consensus       265 ~~al~~v~~~~~~~~-------~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr------~---~~~g~~~--  326 (499)
T 2dhr_A          265 EEAADRVMMLPAKKS-------LVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPR------G---RALGFMM--  326 (499)
T ss_dssp             HHHHHHHTTCSSSSC-------CCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCS------S---CTTCSSH--
T ss_pred             HHHHHHHhccccccc-------chhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecC------C---CcCcccc--
Confidence            346788888765432       34689999999999999999999986  68999999997      4   3556665  


Q ss_pred             chhhhhhccccCCHHHHHHHHHHHhhHHHHHHHHhCCc-cchhhHHHHHHHHHHh----cCCCH----------------
Q 019841          223 FEFLEEVNSGKVSATTLNRFSCIALAGVATEYLLYGYA-EGGLADINKLDALLKG----LGFTQ----------------  281 (335)
Q Consensus       223 ~~~~~~l~~g~~s~~~L~r~~~VlLAGrAAE~LvyG~a-~Gg~~Dl~~at~i~~~----lG~s~----------------  281 (335)
                      |.   +.+.+.+|+.++...++++|||||||+++||++ +|++||++++|++++.    +|||.                
T Consensus       327 p~---q~~~~~~t~~~l~~~i~~~lgGr~ae~~~~g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~  403 (499)
T 2dhr_A          327 PR---REDMLHWSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLG  403 (499)
T ss_dssp             HH---HTTCCCCCHHHHHHHHHHHHHHHHHHHHHSCSCCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCCSSC
T ss_pred             cc---hhhhhccCHHHHHHHHHHHhhhHhHHHhhhcccCcccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCccccc
Confidence            32   134567899999999999999999999999997 5999999999999874    56643                


Q ss_pred             ------------HHHHHHHH----HHHHHHHHHHHHcHHHHHHHHHHHHcccch--HHHHHHHHhh
Q 019841          282 ------------KKADSQVR----WSLLNTVLLLRRHKGARAKLAEAMTMGKSL--GSCIDIIEDN  329 (335)
Q Consensus       282 ------------~~~d~evR----~A~~~A~~LLr~hr~aleaLaeaLle~esl--~~Ci~~Ie~~  329 (335)
                                  ..+|.+++    +||.+|++||++|++.+++||++|+++|||  +++.++++..
T Consensus       404 ~~~~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~  469 (499)
T 2dhr_A          404 GYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGL  469 (499)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTC
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhccC
Confidence                        13566655    799999999999999999999999999999  7888888764

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}

Probab=95.94  E-value=0.0064  Score=55.52  Aligned_cols=57  Identities=25%  Similarity=0.383  Sum_probs=41.4

Q ss_pred             HHHHHHHhHHHHHHHhCCCCceeEecchhHHhhhCccccccceeeecchhhhhhccccCCHHHHHHHHHHHhhHHHHHHH
Q 019841          176 RVIQHEAGHFLIAYLVGILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIALAGVATEYL  255 (335)
Q Consensus       176 RIA~HEAGHaLVAylLg~PV~~~TI~p~eal~~~G~~~~~gG~~f~~~~~~~~l~~g~~s~~~L~r~~~VlLAGrAAE~L  255 (335)
                      -+..||.||+++|+..|+++.++++.|.      |      |+.  ..+  +      .++   .+...|.+||-.+.-+
T Consensus        50 ~v~~HElgH~~~A~~~G~~~~~i~l~p~------G------g~~--~~~--~------~~~---~~~~~ValAGPl~nl~  104 (224)
T 3b4r_A           50 SVVLHELGHSYVAKKYGVKIEKILLLPI------G------GVA--MMD--K------IPK---EGELRIGIAGPLVSFI  104 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCCEEECSS------S------CBC--CCC--C------CCS---SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCccccEEEEEe------e------eEE--Ecc--c------CCc---cceeeeeeeHHHHHHH
Confidence            4778999999999999999999999986      4      322  111  1      111   3456788999988865


Q ss_pred             Hh
Q 019841          256 LY  257 (335)
Q Consensus       256 vy  257 (335)
                      .-
T Consensus       105 la  106 (224)
T 3b4r_A          105 IG  106 (224)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	335
d2ce7a1	193	Cell division protein FtsH, C-terminal domain {The	99.97
d2di4a1	202	Cell division protein FtsH, C-terminal domain {Aqu	99.97

>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=2.4e-31  Score=235.19  Aligned_cols=146  Identities=20%  Similarity=0.250  Sum_probs=112.0

Q ss_pred             CCHhHHHHHHHHHHhHHHHHHHhC--CCCceeEecchhHHhhhCccccccceeeecchhhhhhccccCCHHHHHHHHHHH
Q 019841          169 FSQKYHNRVIQHEAGHFLIAYLVG--ILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIA  246 (335)
Q Consensus       169 ~s~~~r~RIA~HEAGHaLVAylLg--~PV~~~TI~p~eal~~~G~~~~~gG~~f~~~~~~~~l~~g~~s~~~L~r~~~Vl  246 (335)
                      +||++|+||||||||||+|||+++  .|+.++||+|+      |  +..+|++...+..    +.+..|++++.+.++|+
T Consensus         2 ls~~er~~vA~HEAGHAlva~~l~~~~~i~~vsI~~r------~--~~~~g~~~~~~~~----~~~~~t~~~l~~~i~v~   69 (193)
T d2ce7a1           2 ISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPR------G--YKALGYTLHLPEE----DKYLVSRNELLDKLTAL   69 (193)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------------------CCSCBHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEecC------c--cCCCceeecCCcc----ccccCcHHHHHHHHHHH
Confidence            689999999999999999999995  68999999997      3  2345655433321    34667999999999999


Q ss_pred             hhHHHHHHHHhCCc-cchhhHHHHHHHHHHh----cCCCHH-------------------------------HHHHHHH-
Q 019841          247 LAGVATEYLLYGYA-EGGLADINKLDALLKG----LGFTQK-------------------------------KADSQVR-  289 (335)
Q Consensus       247 LAGrAAE~LvyG~a-~Gg~~Dl~~at~i~~~----lG~s~~-------------------------------~~d~evR-  289 (335)
                      |||||||+++||+. +|+++|++++|++++.    +||+.+                               .+|++++ 
T Consensus        70 LaGraAE~~~~g~~s~Ga~~Dl~~At~lA~~~v~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~  149 (193)
T d2ce7a1          70 LGGRAAEEVVFGDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKK  149 (193)
T ss_dssp             THHHHHHHHHHSSCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCccCcHHHHHHHHHHHHHhhCcCCCcCceeeccCCccccccccccccccccHHHHHHHHHHHHH
Confidence            99999999999996 5999999999999864    566421                               2455544 


Q ss_pred             ---HHHHHHHHHHHHcHHHHHHHHHHHHcccch--HHHHHHH
Q 019841          290 ---WSLLNTVLLLRRHKGARAKLAEAMTMGKSL--GSCIDII  326 (335)
Q Consensus       290 ---~A~~~A~~LLr~hr~aleaLaeaLle~esl--~~Ci~~I  326 (335)
                         .||.+|+++|++|++.+++|+++|+++++|  ++..++|
T Consensus       150 ll~~a~~~a~~iL~~~~~~l~~la~~Lle~e~L~g~ei~~il  191 (193)
T d2ce7a1         150 IVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRIL  191 (193)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHH
Confidence               699999999999999999999999999999  4444554

>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.97  E-value=1.4e-30  Score=231.38  Aligned_cols=148  Identities=16%  Similarity=0.236  Sum_probs=116.2

Q ss_pred             CCHhHHHHHHHHHHhHHHHHHHhC--CCCceeEecchhHHhhhCccccccceeeecchhhhhhccccCCHHHHHHHHHHH
Q 019841          169 FSQKYHNRVIQHEAGHFLIAYLVG--ILPKGYTLTSLEALKKEGSLNVQAGTAFVDFEFLEEVNSGKVSATTLNRFSCIA  246 (335)
Q Consensus       169 ~s~~~r~RIA~HEAGHaLVAylLg--~PV~~~TI~p~eal~~~G~~~~~gG~~f~~~~~~~~l~~g~~s~~~L~r~~~Vl  246 (335)
                      +||++|+||||||||||+|||+++  +||.++||+|+      |  +..+|+.+....     +....|++++.+.++|+
T Consensus         2 ls~~ek~~vA~HEAGHAvva~~l~~~~~v~~vtI~pr------g--~~~g~~~~~~~~-----~~~~~t~~~l~~~i~v~   68 (202)
T d2di4a1           2 ISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPR------G--MALGVTQQLPIE-----DKHIYDKKDLYNKILVL   68 (202)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC-----------------------------CCCCBHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEecC------C--ccccccccCccc-----ccchhhHHHHHHHHHHH
Confidence            589999999999999999999997  68999999997      4  234444443221     34677999999999999


Q ss_pred             hhHHHHHHHHhCC---ccchhhHHHHHHHHHHh----cCCCH-----------------------------HHHHHHHH-
Q 019841          247 LAGVATEYLLYGY---AEGGLADINKLDALLKG----LGFTQ-----------------------------KKADSQVR-  289 (335)
Q Consensus       247 LAGrAAE~LvyG~---a~Gg~~Dl~~at~i~~~----lG~s~-----------------------------~~~d~evR-  289 (335)
                      |||||||+++||+   .+|+.+|+++++++++.    +||+.                             ..+|.+++ 
T Consensus        69 LgGraAE~i~~g~~~~~~g~~~dl~~At~~A~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~  148 (202)
T d2di4a1          69 LGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKR  148 (202)
T ss_dssp             HHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHHHHHH
T ss_pred             HhhhhcceeeecCcccccCccchHHHHHHHHHHHHHhhCcccccchhhhcccccchhhhhhccccchhhHHHHHHHHHHH
Confidence            9999999999997   36999999999999764    56542                             13555544 


Q ss_pred             ---HHHHHHHHHHHHcHHHHHHHHHHHHcccch--HHHHHHHHhh
Q 019841          290 ---WSLLNTVLLLRRHKGARAKLAEAMTMGKSL--GSCIDIIEDN  329 (335)
Q Consensus       290 ---~A~~~A~~LLr~hr~aleaLaeaLle~esl--~~Ci~~Ie~~  329 (335)
                         +|+.+|++||++|++.+++||++|+++++|  ++..++|++.
T Consensus       149 ll~~a~~~a~~iL~~~~~~l~~la~~Lle~etL~~~ei~~il~~~  193 (202)
T d2di4a1         149 IITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLY  193 (202)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHHHC
Confidence               799999999999999999999999999999  7777888874