Citrus Sinensis ID: 019847
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 335 | 2.2.26 [Sep-21-2011] | |||||||
| Q54MZ3 | 499 | Anaphase-promoting comple | yes | no | 0.892 | 0.599 | 0.464 | 3e-82 | |
| Q9JJ66 | 499 | Cell division cycle prote | yes | no | 0.892 | 0.599 | 0.469 | 7e-79 | |
| Q12834 | 499 | Cell division cycle prote | yes | no | 0.892 | 0.599 | 0.472 | 8e-79 | |
| Q62623 | 499 | Cell division cycle prote | yes | no | 0.892 | 0.599 | 0.469 | 9e-79 | |
| Q5H7C0 | 499 | Cell division cycle prote | yes | no | 0.892 | 0.599 | 0.469 | 2e-78 | |
| Q8LPL5 | 481 | Protein FIZZY-RELATED 3 O | no | no | 0.949 | 0.661 | 0.418 | 6e-73 | |
| O94423 | 421 | Meiotic fizzy-related pro | yes | no | 0.907 | 0.722 | 0.412 | 7e-69 | |
| O13286 | 556 | WD repeat-containing prot | no | no | 0.880 | 0.530 | 0.415 | 2e-68 | |
| Q8L3Z8 | 483 | Protein FIZZY-RELATED 2 O | no | no | 0.946 | 0.656 | 0.396 | 5e-68 | |
| Q9UM11 | 496 | Fizzy-related protein hom | no | no | 0.883 | 0.596 | 0.413 | 2e-67 |
| >sp|Q54MZ3|CDC20_DICDI Anaphase-promoting complex subunit cdc20 OS=Dictyostelium discoideum GN=cdc20 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 305 bits (781), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 142/306 (46%), Positives = 196/306 (64%), Gaps = 7/306 (2%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
RILDAP +++DYY ++DW NV+A+ LG ++LW ++++L QV +DDY TS+
Sbjct: 171 RILDAPDIVDDYYLNLLDWSSQNVIAIPLGQTVYLWNATTSEIQRLFQVEQQDDYITSLQ 230
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
W+ D LAVG +QLWD +K VR L GH RV +WN + IL+SGS D +I
Sbjct: 231 WTKDGNYLAVGTNSCTIQLWDVAHTKKVRELRGHAGRVGALAWNDY---ILSSGSSDTNI 287
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF 185
NHDVRV N+ S + HS EVCGLKWS++G LASGG+DN++ IW+ + + H F
Sbjct: 288 FNHDVRVQNHHVSTLSGHSQEVCGLKWSHDGGQLASGGNDNIINIWDINSENFETPAHTF 347
Query: 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHH 245
H V+ALAW P Q N+LATGGG D I+ WN G C++ +D +Q+C ++W+ +
Sbjct: 348 EQHTAAVRALAWCPFQPNLLATGGGAADRTIRFWNTITGVCLNTVDTMSQVCSIQWSTTY 407
Query: 246 KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETI 305
+E++S HG+S N+LC+WKYP+M K EL SR L + SPDG TV +A ADET+
Sbjct: 408 RELVSSHGYSQ----NQLCVWKYPSMVKCAELTGHTSRALHTAISPDGETVVSASADETL 463
Query: 306 RFWEAF 311
RFW F
Sbjct: 464 RFWRVF 469
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Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9JJ66|CDC20_MOUSE Cell division cycle protein 20 homolog OS=Mus musculus GN=Cdc20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 294 bits (752), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 144/307 (46%), Positives = 200/307 (65%), Gaps = 8/307 (2%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
RILDAP + DYY ++DW NVLAVAL ++LW +G + +LLQ+ DY +SV+
Sbjct: 174 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWNAGSGDILQLLQMEQPGDYISSVA 233
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
W + LAVG ++++QLWD + K +RN+ H RV++ S WN +IL+SGS+ I
Sbjct: 234 WIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSHSARVSSLS---WNSYILSSGSRSGHI 290
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSS-KSLHR 184
+HDVRV+ + + + HS EVCGL+W+ +G LASGG+DN+V +W S L
Sbjct: 291 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGESGWAPLQT 350
Query: 185 FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRH 244
FT H G VKA+AW P Q N+LATGGG D I+IWNV G C+ +D +Q+C + W+ H
Sbjct: 351 FTQHQGAVKAVAWCPWQSNILATGGGTSDRHIRIWNVCSGACLSAVDVHSQVCSILWSPH 410
Query: 245 HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADET 304
+KE++SGHGF+ N+L +WKYP M KV EL+ +R+L L+ SPDG TVA+A ADET
Sbjct: 411 YKELISGHGFAQ----NQLVIWKYPTMAKVAELKGHTARVLGLTMSPDGATVASAAADET 466
Query: 305 IRFWEAF 311
+R W F
Sbjct: 467 LRLWRCF 473
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Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation. Mus musculus (taxid: 10090) |
| >sp|Q12834|CDC20_HUMAN Cell division cycle protein 20 homolog OS=Homo sapiens GN=CDC20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 294 bits (752), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 145/307 (47%), Positives = 199/307 (64%), Gaps = 8/307 (2%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
RILDAP + DYY ++DW NVLAVAL ++LW +G + +LLQ+ +Y +SV+
Sbjct: 174 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVA 233
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
W + LAVG +++QLWD + K +RN+ H RV + S WN +IL+SGS+ I
Sbjct: 234 WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS---WNSYILSSGSRSGHI 290
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSS-KSLHR 184
+HDVRV+ + + + HS EVCGL+W+ +G LASGG+DN+V +W + L
Sbjct: 291 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 350
Query: 185 FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRH 244
FT H G VKA+AW P Q NVLATGGG D I+IWNV G C+ +DA +Q+C + W+ H
Sbjct: 351 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH 410
Query: 245 HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADET 304
+KE++SGHGF+ N+L +WKYP M KV EL+ SR+L L+ SPDG TVA+A ADET
Sbjct: 411 YKELISGHGFAQ----NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 466
Query: 305 IRFWEAF 311
+R W F
Sbjct: 467 LRLWRCF 473
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Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation. Homo sapiens (taxid: 9606) |
| >sp|Q62623|CDC20_RAT Cell division cycle protein 20 homolog OS=Rattus norvegicus GN=Cdc20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 293 bits (751), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 144/307 (46%), Positives = 200/307 (65%), Gaps = 8/307 (2%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
RILDAP + DYY ++DW NVLAVAL ++LW +G + +LLQ+ DY +SV+
Sbjct: 174 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWNAGSGDILQLLQMEQPGDYISSVA 233
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
W + LAVG ++++QLWD + K +RN+ H RV++ S WN +IL+SGS+ I
Sbjct: 234 WIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSHSARVSSLS---WNSYILSSGSRSGHI 290
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSS-KSLHR 184
+HDVRV+ + + + HS EVCGL+W+ +G LASGG+DN+V +W S L
Sbjct: 291 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGESGWVPLQT 350
Query: 185 FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRH 244
FT H G VKA+AW P Q N+LATGGG D I+IWNV G C+ +D +Q+C + W+ H
Sbjct: 351 FTQHQGAVKAVAWCPWQSNILATGGGTSDRHIRIWNVCSGACLSAVDVHSQVCSILWSPH 410
Query: 245 HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADET 304
+KE++SGHGF+ N+L +WKYP M KV EL+ +R+L L+ SPDG TVA+A ADET
Sbjct: 411 YKELISGHGFAQ----NQLVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADET 466
Query: 305 IRFWEAF 311
+R W F
Sbjct: 467 LRLWRCF 473
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Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation (By similarity). Interacts with NEK2. Rattus norvegicus (taxid: 10116) |
| >sp|Q5H7C0|CDC20_PIG Cell division cycle protein 20 homolog OS=Sus scrofa GN=CDC20 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (749), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 144/307 (46%), Positives = 198/307 (64%), Gaps = 8/307 (2%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
RILDAP + DYY ++DW NVLAVAL ++LW +G + +LLQ+ DY +SV+
Sbjct: 174 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVA 233
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
W + LAVG +++QLWD + K +RN+ H RV + WN +IL+SGS+ I
Sbjct: 234 WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLC---WNSYILSSGSRSGHI 290
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSS-KSLHR 184
+HDVRV+ + + + HS EVCGL+W+ +G LASGG+DN+V +W + L
Sbjct: 291 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 350
Query: 185 FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRH 244
FT H G VKA+AW P Q NVLATGGG D I+IWNV G C+ +DA +Q+C + W+ H
Sbjct: 351 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH 410
Query: 245 HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADET 304
+KE++SGHGF+ N+L +WKYP M KV EL+ +R+L L+ SPDG TVA+A ADET
Sbjct: 411 YKELISGHGFAQ----NQLVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADET 466
Query: 305 IRFWEAF 311
+R W F
Sbjct: 467 LRLWRCF 473
|
Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation. Sus scrofa (taxid: 9823) |
| >sp|Q8LPL5|FZR3_ARATH Protein FIZZY-RELATED 3 OS=Arabidopsis thaliana GN=FZR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (701), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 138/330 (41%), Positives = 200/330 (60%), Gaps = 12/330 (3%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
++LDAP L +D+Y V+DW NVLAV LG ++LW N KV KL + G +D SV
Sbjct: 164 KVLDAPSLQDDFYLNVVDWSSQNVLAVGLGTCVYLWTASNSKVTKLCDL-GPNDSVCSVQ 222
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
W+ + +++G ++Q+WD K VR + GH R +WN IL+SGS+D++I
Sbjct: 223 WTREGSYISIGTSHGQVQVWDGTQCKRVRTMGGHQTRTGVLAWN---SRILSSGSRDRNI 279
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF 185
+ HD+RV ++ S + H EVCGLKWS++ LASGG+DN + +W S + + +
Sbjct: 280 LQHDIRVQSDFVSKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVWNNH---SQQPILKL 336
Query: 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHH 245
T+H VKA+ WSPHQ ++LA+GGG D CI+ WN G ++ ID +Q+C L W+++
Sbjct: 337 TEHTAAVKAITWSPHQSSLLASGGGTADRCIRFWNTTNGNQLNSIDTGSQVCNLAWSKNV 396
Query: 246 KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETI 305
EI+S HG+S N++ LWKYP+M+KV L + R+L L+ SPDG T+ T DET+
Sbjct: 397 NEIVSTHGYSQ----NQIMLWKYPSMSKVATLTGHSMRVLYLATSPDGQTIVTGAGDETL 452
Query: 306 RFWEAFGPSGDEDSVSHLAGLVSLKTSVIR 335
RFW F PS + GL SL + IR
Sbjct: 453 RFWNVF-PSVKMQTPVKDTGLWSLGRTQIR 481
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Activator protein that regulates the ubiquitin ligase activity and substrate specificity of the anaphase promoting complex/cyclosome (APC/C). Arabidopsis thaliana (taxid: 3702) |
| >sp|O94423|MFR1_SCHPO Meiotic fizzy-related protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mfr1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 261 bits (666), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 192/315 (60%), Gaps = 11/315 (3%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
+ILDAPYL D+Y ++DWG++NVLAV L ++LW +GKV +L G ++ TSV
Sbjct: 115 KILDAPYLKNDFYLNLLDWGQSNVLAVGLASSIYLWSAASGKVVQLHDF-GATNHVTSVL 173
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
W+ LAVG + +WD E++K VR+L+GH RVA +WN + LTSG KD+ I
Sbjct: 174 WTGKGTQLAVGTDSGVIYIWDIESTKSVRSLKGHSERVAALAWND---NTLTSGGKDEVI 230
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF 185
++HD+R +K H E+CGL+W LASGG+DN + +W+ SS+ LH+F
Sbjct: 231 LHHDLRAPGCCAEMMKVHEQEICGLQWDRSLGQLASGGNDNNLFVWD---YRSSRPLHKF 287
Query: 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHH 245
+H VKA+ WSPHQ +LA+GGG D C+ I N G + +D +Q+C + W++
Sbjct: 288 EEHTAAVKAIGWSPHQRGILASGGGTIDRCLTIHNTLTGRLQNKLDTGSQVCNMAWSKTS 347
Query: 246 KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETI 305
EI++ HGF+ N++ LWKYP++ + L + +R+L LS SPDG ++ T DET+
Sbjct: 348 NEIVTTHGFAK----NQVSLWKYPSLKNIANLTAHTNRVLYLSMSPDGQSIVTGAGDETL 403
Query: 306 RFWEAFGPSGDEDSV 320
RFW+ F E+S
Sbjct: 404 RFWKLFNKKPKEEST 418
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Meiosis-specific activator of the anaphase promoting complex/cyclosome (APC/C). Involved in cdc13 degradation. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|O13286|SRW1_SCHPO WD repeat-containing protein srw1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srw1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (661), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/306 (41%), Positives = 187/306 (61%), Gaps = 11/306 (3%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
R+LDAP L D+Y ++DWG+ N+LAVAL ++LW + +V + D TS+
Sbjct: 240 RVLDAPGLAGDFYLNLLDWGQCNMLAVALASRVYLWSGISSEVTVMHNFYPTDTV-TSLR 298
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
W LAVG + +++WDA T K R + GH RV SWN H+L+SG +D I
Sbjct: 299 WVQRGTHLAVGTHNGSVEIWDAATCKKTRTMSGHTERVGALSWN---DHVLSSGGRDNHI 355
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF 185
++ DVR + + AH EVCGL+W++ NLLASGG+DN + +W++ + K L+ F
Sbjct: 356 LHRDVRAPEHYFRVLTAHRQEVCGLEWNSNENLLASGGNDNALMVWDKFE---EKPLYSF 412
Query: 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHH 245
+H VKA+ WSPHQ +LA+GGG D IK+WN Q+G+ +H ID +Q+C L W++
Sbjct: 413 HNHIAAVKAITWSPHQRGILASGGGTADRTIKLWNTQRGSMLHNIDTGSQVCNLLWSKQT 472
Query: 246 KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETI 305
E +S HGF N++ LW YP++++VG L+ R+L L+ SP+G + T ADET+
Sbjct: 473 NEFISTHGFME----NEVALWNYPSVSRVGTLKGHTDRVLYLAMSPNGENIVTGAADETL 528
Query: 306 RFWEAF 311
RFW+ F
Sbjct: 529 RFWKLF 534
|
Has a role in cell differentiation and cell cycling by negatively regulating cig2 and cdc12-associated cdc2. Down-regulates the level of cdc13, particularly in a nitrogen deprived environment. Regulator of cell cycle G1 phase progression. Prevents onset of mitosis during the pre-Start G1 period. Required for degradation of cdc13 mitotic cyclin B during G1 arrest but not during mitotic exit. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q8L3Z8|FZR2_ARATH Protein FIZZY-RELATED 2 OS=Arabidopsis thaliana GN=FZR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 258 bits (658), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 130/328 (39%), Positives = 194/328 (59%), Gaps = 11/328 (3%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
++LDAP L +D+Y ++DW NVLAV LG ++LW + KV KL + G +D SV
Sbjct: 166 KVLDAPALQDDFYLNLVDWSAQNVLAVGLGNCVYLWNACSSKVTKLCDL-GAEDSVCSVG 224
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
W+ LAVG K+Q+WDA K R +EGH RV +W +L+SGS+DKSI
Sbjct: 225 WALRGTHLAVGTSTGKVQIWDASRCKRTRTMEGHRLRVGALAWG---SSVLSSGSRDKSI 281
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF 185
+ D+R + S + H EVCGLKWS + LASGG+DN + +W + S++ + ++
Sbjct: 282 LQRDIRCQEDHVSKLAGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH---STQPVLKY 338
Query: 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHH 245
++H VKA+AWSPH +LA+GGG D CI+ WN T + ID +Q+C L W+++
Sbjct: 339 SEHTAAVKAIAWSPHVHGLLASGGGTADRCIRFWNTTTNTHLSSIDTCSQVCNLAWSKNV 398
Query: 246 KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETI 305
E++S HG+S N++ +WKYP M+K+ L R+L L+ SPDG T+ T DET+
Sbjct: 399 NELVSTHGYSQ----NQIIVWKYPTMSKIATLTGHTYRVLYLAVSPDGQTIVTGAGDETL 454
Query: 306 RFWEAFGPSGDEDSVSHLAGLVSLKTSV 333
RFW F +++ S + +T++
Sbjct: 455 RFWNVFPSPKSQNTDSEIGSSFFGRTTI 482
|
Activator protein that regulates the ubiquitin ligase activity and substrate specificity of the anaphase promoting complex/cyclosome (APC/C). Necessary and sufficient for endoreduplication and correct cell expansion. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9UM11|FZR_HUMAN Fizzy-related protein homolog OS=Homo sapiens GN=FZR1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 256 bits (653), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 127/307 (41%), Positives = 184/307 (59%), Gaps = 11/307 (3%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
++LDAP L +D+Y ++DW NVL+V LG ++LW +V +L + E D TSV
Sbjct: 177 KVLDAPELQDDFYLNLVDWSSLNVLSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVG 236
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
WS +AVG +Q+WDA K + LEGH RV + WN L+SGS+D+ I
Sbjct: 237 WSERGNLVAVGTHKGFVQIWDAAAGKKLSMLEGHTARVGALA---WNAEQLSSGSRDRMI 293
Query: 126 INHDVRVSN-NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHR 184
+ D+R ++ H EVCGLKWS + LLASGG+DN + +W S +S + +
Sbjct: 294 LQRDIRTPPLQSERRLQGHRQEVCGLKWSTDHQLLASGGNDNKLLVWNHSSLS---PVQQ 350
Query: 185 FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRH 244
+T+H VKA+AWSPHQ +LA+GGG D CI+ WN G + ID +Q+C L W++H
Sbjct: 351 YTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKH 410
Query: 245 HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADET 304
E++S HG+S N++ +WKYP++T+V +L + R+L L+ SPDG + T DET
Sbjct: 411 ANELVSTHGYSQ----NQILVWKYPSLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDET 466
Query: 305 IRFWEAF 311
+RFW F
Sbjct: 467 LRFWNVF 473
|
Key regulator of ligase activity of the anaphase promoting complex/cyclosome (APC/C), which confers substrate specificity upon the complex. Associates with the APC/C in late mitosis, in replacement of CDC20, and activates the APC/C during anaphase and telophase. The APC/C remains active in degrading substrates to ensure that positive regulators of the cell cycle do not accumulate prematurely. At the G1/S transition FZR1 is phosphorylated, leading to its dissociation from the APC/C. Following DNA damage, it is required for the G2 DNA damage checkpoint: its dephosphorylation and reassociation with the APC/C leads to the ubiquitination of PLK1, preventing entry into mitosis. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 335 | ||||||
| 359490104 | 454 | PREDICTED: anaphase-promoting complex su | 0.985 | 0.726 | 0.628 | 1e-121 | |
| 297744965 | 469 | unnamed protein product [Vitis vinifera] | 0.976 | 0.697 | 0.622 | 1e-118 | |
| 255539973 | 459 | cell division cycle, putative [Ricinus c | 0.931 | 0.679 | 0.642 | 1e-117 | |
| 356533257 | 486 | PREDICTED: anaphase-promoting complex su | 0.982 | 0.676 | 0.610 | 1e-115 | |
| 357450999 | 452 | Cell division cycle protein-like protein | 0.985 | 0.730 | 0.595 | 1e-112 | |
| 147799089 | 455 | hypothetical protein VITISV_011377 [Viti | 0.955 | 0.703 | 0.585 | 1e-110 | |
| 356502408 | 308 | PREDICTED: LOW QUALITY PROTEIN: cell div | 0.892 | 0.970 | 0.520 | 6e-89 | |
| 302773299 | 419 | hypothetical protein SELMODRAFT_92939 [S | 0.892 | 0.713 | 0.501 | 1e-86 | |
| 303279881 | 358 | predicted protein [Micromonas pusilla CC | 0.901 | 0.843 | 0.501 | 3e-86 | |
| 307104119 | 421 | hypothetical protein CHLNCDRAFT_26822 [C | 0.883 | 0.703 | 0.517 | 3e-86 |
| >gi|359490104|ref|XP_002277711.2| PREDICTED: anaphase-promoting complex subunit cdc20-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/334 (62%), Positives = 262/334 (78%), Gaps = 4/334 (1%)
Query: 3 REARILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPT 62
+E+R+LDAP + +DYY ++DWG+ N+LA+ALG L+LW E G +KL+QV ++DYPT
Sbjct: 124 KESRVLDAPRINDDYYLNIMDWGKRNILAIALGSDLYLWNAETGHSQKLMQVDDQEDYPT 183
Query: 63 SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122
S++W D + +AVG++ SKLQLWDAET KL+R+LEGH RV ++WN G ILTSGS+D
Sbjct: 184 SIAWCEDGRRVAVGHLSSKLQLWDAETFKLIRSLEGHDDRVGIAAWN---GQILTSGSRD 240
Query: 123 KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL 182
KSIINHDVR N++T ++ HS EVCGLKWS GN LASGG++N++ IWE SKM SS L
Sbjct: 241 KSIINHDVRARNSLTCRVQIHSQEVCGLKWSITGNKLASGGNENLIYIWEASKMCSSNFL 300
Query: 183 HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWN 242
HRF+ H VKALAW P+Q +VLA+GGG DGCIKIWN+QKGTCI+ I A AQICGLEWN
Sbjct: 301 HRFSGHQAAVKALAWCPYQSDVLASGGGTLDGCIKIWNIQKGTCINSIRANAQICGLEWN 360
Query: 243 RHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302
RHHKEILSGHGFSA+G N+LCLWKYP+M+K+GEL+ +SR+L LSQSPDG TV +AGAD
Sbjct: 361 RHHKEILSGHGFSATGHQNELCLWKYPSMSKLGELKCHSSRVLHLSQSPDGSTVVSAGAD 420
Query: 303 ETIRFWEAFGPS-GDEDSVSHLAGLVSLKTSVIR 335
ET+RFWE FGP D VS L L+S K S+IR
Sbjct: 421 ETLRFWEVFGPPVTDSSRVSDLDSLLSFKRSLIR 454
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744965|emb|CBI38557.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/331 (62%), Positives = 257/331 (77%), Gaps = 4/331 (1%)
Query: 3 REARILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPT 62
+E+R+LDAP + +DYY ++DWG+ N+LA+ALG L+LW E G +KL+QV ++DYPT
Sbjct: 125 KESRVLDAPRINDDYYLNIMDWGKRNILAIALGSDLYLWNAETGHSQKLMQVDDQEDYPT 184
Query: 63 SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122
S++W D + +AVG++ SKLQLWDAET KL+R+LEGH RV ++WN G ILTSGS+D
Sbjct: 185 SIAWCEDGRRVAVGHLSSKLQLWDAETFKLIRSLEGHDDRVGIAAWN---GQILTSGSRD 241
Query: 123 KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL 182
KSIINHDVR N++T ++ HS EVCGLKWS GN LASGG++N++ IWE SKM SS L
Sbjct: 242 KSIINHDVRARNSLTCRVQIHSQEVCGLKWSITGNKLASGGNENLIYIWEASKMCSSNFL 301
Query: 183 HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWN 242
HRF+ H VKALAW P+Q +VLA+GGG DGCIKIWN+QKGTCI+ I A AQICGLEWN
Sbjct: 302 HRFSGHQAAVKALAWCPYQSDVLASGGGTLDGCIKIWNIQKGTCINSIRANAQICGLEWN 361
Query: 243 RHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302
RHHKEILSGHGFSA+G N+LCLWKYP+M+K+GEL+ +SR+L LSQSPDG TV +AGAD
Sbjct: 362 RHHKEILSGHGFSATGHQNELCLWKYPSMSKLGELKCHSSRVLHLSQSPDGSTVVSAGAD 421
Query: 303 ETIRFWEAFGPS-GDEDSVSHLAGLVSLKTS 332
ET+RFWE FGP D VS L L+ S
Sbjct: 422 ETLRFWEVFGPPVTDSSRVSDLDSLLMFPIS 452
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539973|ref|XP_002511051.1| cell division cycle, putative [Ricinus communis] gi|223550166|gb|EEF51653.1| cell division cycle, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/316 (64%), Positives = 248/316 (78%), Gaps = 4/316 (1%)
Query: 3 REARILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPT 62
RE R+LDAP +++DYY +IDWG+NNV+AVALG ++LW EN KLL+V + DYPT
Sbjct: 130 RETRVLDAPNIIDDYYVNIIDWGKNNVIAVALGQAIYLWNAENKSTLKLLEVESDSDYPT 189
Query: 63 SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122
S+SWS D ++LAVGYM SKLQLWD E + VR ++GH RVAT +WN GH LTSGS+D
Sbjct: 190 SISWSEDNRSLAVGYMQSKLQLWDTEALRCVRQMDGHKNRVATLAWN---GHTLTSGSRD 246
Query: 123 KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL 182
K+I+N DVRV N+ TS I AH+ EVCGLKWS EGNLLASGG++N++ IWE SKMSSS L
Sbjct: 247 KTILNRDVRVRNS-TSRILAHTEEVCGLKWSTEGNLLASGGNENLIHIWEASKMSSSNFL 305
Query: 183 HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWN 242
H+F H VKALAW P+Q NVLA+GGG +DGCIKIWNV+KG+CIH I +QIC LEWN
Sbjct: 306 HQFKGHRSAVKALAWCPYQFNVLASGGGTKDGCIKIWNVRKGSCIHSIHTNSQICALEWN 365
Query: 243 RHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302
RHHKEILSGHG+S N LCLWKYP++TKVGE+Q ++RIL LSQSPDGLTV +AGAD
Sbjct: 366 RHHKEILSGHGYSLGPLQNHLCLWKYPSLTKVGEIQRHSNRILGLSQSPDGLTVVSAGAD 425
Query: 303 ETIRFWEAFGPSGDED 318
+T+RFW+ FGP E+
Sbjct: 426 QTLRFWDIFGPPCAEN 441
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533257|ref|XP_003535182.1| PREDICTED: anaphase-promoting complex subunit cdc20-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/334 (61%), Positives = 251/334 (75%), Gaps = 5/334 (1%)
Query: 3 REARILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPT 62
+E+RILDAP + D+YS ++DWG NN+LA+AL ++LW EN V KL + +D+PT
Sbjct: 157 KESRILDAPNIRNDFYSNIMDWGNNNILAIALDSDMYLWNSENKNVFKLFKATN-NDFPT 215
Query: 63 SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122
SVSWS D K LA+G+M+SKLQLWDAETSK +R L+GH R+AT +WN G ILTSGS D
Sbjct: 216 SVSWSEDTKYLAIGFMNSKLQLWDAETSKPIRILQGHGHRIATIAWN---GQILTSGSHD 272
Query: 123 KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL 182
K IINHDVR NNV S +KAH EVCGLKW+ N+LASGG++N + +W+ KMSSS L
Sbjct: 273 KYIINHDVRARNNVISQVKAHKAEVCGLKWTRRSNMLASGGNENHIYVWDLVKMSSSNFL 332
Query: 183 HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWN 242
H F DHC VKALAW P+ +VLA+GGG ED CIK+WNV+KG+ I ID KAQ+CGLEWN
Sbjct: 333 HCFKDHCAAVKALAWCPYDSSVLASGGGTEDSCIKLWNVKKGSSICSIDTKAQVCGLEWN 392
Query: 243 RHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302
RHHKE+LSGHGFS S N+LC+WKYP+MTKVG L SR+L L QSPDGLTV +AGAD
Sbjct: 393 RHHKELLSGHGFSTSAHHNQLCMWKYPSMTKVGGLDRHASRVLHLCQSPDGLTVVSAGAD 452
Query: 303 ETIRFWEAFGPSGDEDS-VSHLAGLVSLKTSVIR 335
E++RFW+ FGP + S +S L L+SLK S IR
Sbjct: 453 ESLRFWDVFGPPVNNTSEISDLDNLLSLKVSPIR 486
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357450999|ref|XP_003595776.1| Cell division cycle protein-like protein [Medicago truncatula] gi|355484824|gb|AES66027.1| Cell division cycle protein-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/334 (59%), Positives = 251/334 (75%), Gaps = 4/334 (1%)
Query: 3 REARILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPT 62
+E+R+LDAP + DYY+ ++DWG+N++LAVALGP ++ W V +L +V G ++YPT
Sbjct: 122 KESRVLDAPKIKNDYYTNLVDWGKNSILAVALGPEIYFWNSVTTDVSRLFKVNG-NNYPT 180
Query: 63 SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122
SVSWS DAK +A G++ S+LQ+WDAETSKLVRNLEGH +R+AT +WN N ILTSG D
Sbjct: 181 SVSWSEDAKYVATGFVHSQLQIWDAETSKLVRNLEGHAQRIATLAWN--NNRILTSGGHD 238
Query: 123 KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL 182
KSIINHDVR N IK H E+CGLKWS GNLLASGG++N V +W+ +KM+SS L
Sbjct: 239 KSIINHDVRARRNEVLRIKTHRAEICGLKWSKRGNLLASGGNENHVYVWDSNKMNSSNFL 298
Query: 183 HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWN 242
H F +H VKAL W P+ +VLA+GGG +D CIK+WNVQ+GT I ID KAQ+CGL+WN
Sbjct: 299 HCFKEHTAAVKALDWCPYDSDVLASGGGTDDRCIKLWNVQRGTNICSIDTKAQVCGLQWN 358
Query: 243 RHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302
RH+KEILSGHGFS S + N+LCLW+YP+MTKVG L SR+L LSQSPDGLTV +AG D
Sbjct: 359 RHYKEILSGHGFSTSPEHNQLCLWQYPSMTKVGGLDPHTSRVLHLSQSPDGLTVVSAGGD 418
Query: 303 ETIRFWEAFGPS-GDEDSVSHLAGLVSLKTSVIR 335
ET+RFW+ FGP+ D S L L+S+K S IR
Sbjct: 419 ETLRFWDIFGPAVNDTRESSVLGNLLSMKASQIR 452
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147799089|emb|CAN72563.1| hypothetical protein VITISV_011377 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/345 (58%), Positives = 252/345 (73%), Gaps = 25/345 (7%)
Query: 3 REARILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPT 62
+E+R+LDAP + +DYY ++DWG+ N+LA+ALG L+LW E G +KL+QV ++DYPT
Sbjct: 124 KESRVLDAPRINDDYYLNIMDWGKRNILAIALGSDLYLWNAETGHSQKLMQVDDQEDYPT 183
Query: 63 SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122
S++W D + +AVG++ SKLQLWDAET KL+R+LEGH RV ++WN G ILTSGS+D
Sbjct: 184 SIAWCEDGRRVAVGHLSSKLQLWDAETFKLIRSLEGHDDRVGIAAWN---GQILTSGSRD 240
Query: 123 KSIINHD------VRVSNN-----VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171
KSIINHD ++ NN SCI H G N LASGG++N++ IW
Sbjct: 241 KSIINHDGTSILTSQIQNNGDNNSKCSCINVHIGR----------NKLASGGNENLIYIW 290
Query: 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID 231
E SKM SS LHRF+ H VKALAW P+Q +VLA+GGG DGCIKIWN+QKGTCI+ I
Sbjct: 291 EASKMCSSNFLHRFSGHQAAVKALAWCPYQSDVLASGGGTLDGCIKIWNIQKGTCINSIR 350
Query: 232 AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSP 291
A AQICGLEWNRHHKEILSGHGFSA+G N+LCLWKYP+M+K+GEL+ +SR+L LSQSP
Sbjct: 351 ANAQICGLEWNRHHKEILSGHGFSATGHQNELCLWKYPSMSKLGELKCHSSRVLHLSQSP 410
Query: 292 DGLTVATAGADETIRFWEAFGPS-GDEDSVSHLAGLVSLKTSVIR 335
DG TV +AGADET+RFWE FGP D VS L L+S K S+IR
Sbjct: 411 DGSTVVSAGADETLRFWEVFGPPVTDSSRVSDLDSLLSFKRSLIR 455
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356502408|ref|XP_003520011.1| PREDICTED: LOW QUALITY PROTEIN: cell division cycle protein 20 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 333 bits (854), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 174/334 (52%), Positives = 219/334 (65%), Gaps = 35/334 (10%)
Query: 3 REARILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPT 62
+E+RILDA + D+YS ++DWG NN+LAV L LW EN V KL + + +PT
Sbjct: 9 KESRILDAQNIRNDFYSNIMDWGENNILAVCLTHTCTLWNSENSNVFKLFKATN-NKFPT 67
Query: 63 SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122
SVSWS D LA+GYM+S+LQLWDAETSK +R L+
Sbjct: 68 SVSWSEDTNYLAIGYMNSELQLWDAETSKPIRILQ------------------------- 102
Query: 123 KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL 182
VR +NNV S +KAH EVCGLKW+ GN+LASGG++N V +W+ +K SSS L
Sbjct: 103 -------VRATNNVISWVKAHKAEVCGLKWT-RGNILASGGNENHVYVWDLAKRSSSNFL 154
Query: 183 HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWN 242
H F DHC VKAL+W P+ +VLA+GGG ED IK+WNV+KGT I ID KA +CGLEWN
Sbjct: 155 HCFKDHCAAVKALSWCPYDSSVLASGGGTEDRSIKLWNVKKGTIICSIDPKALVCGLEWN 214
Query: 243 RHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302
RHHKE+LSGHGFS S N+LC+W +P+MTKVG L SR+L L QSPDGLTV + GAD
Sbjct: 215 RHHKELLSGHGFSTSAHHNQLCMWTHPSMTKVGGLDCHASRVLHLCQSPDGLTVVSVGAD 274
Query: 303 ETIRFWEAFGPSGDEDS-VSHLAGLVSLKTSVIR 335
+T+RF + FGP + S +S+L L+SL S IR
Sbjct: 275 KTLRFSDVFGPPVNNTSEISNLDNLLSLXVSPIR 308
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302773299|ref|XP_002970067.1| hypothetical protein SELMODRAFT_92939 [Selaginella moellendorffii] gi|302807054|ref|XP_002985258.1| hypothetical protein SELMODRAFT_121776 [Selaginella moellendorffii] gi|300147086|gb|EFJ13752.1| hypothetical protein SELMODRAFT_121776 [Selaginella moellendorffii] gi|300162578|gb|EFJ29191.1| hypothetical protein SELMODRAFT_92939 [Selaginella moellendorffii] | Back alignment and taxonomy information |
|---|
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 156/311 (50%), Positives = 213/311 (68%), Gaps = 12/311 (3%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYP-TSV 64
R LDAP +++DYY ++DWG NN+LAVALG ++LW G +++L+QV EDD P TSV
Sbjct: 92 RTLDAPEILDDYYLNLLDWGTNNILAVALGHTVYLWNATTGGIEELMQV-SEDDGPVTSV 150
Query: 65 SWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKS 124
SW+ D K ++VG ++ +QLWDA + + VR+L+ H RV + + WNG IL++G +D
Sbjct: 151 SWAPDGKHISVGLNNADVQLWDAFSLRQVRSLKAHTARVGSLA---WNGPILSTGGRDNV 207
Query: 125 IINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSS---SKS 181
I NHDVR+ +VT + AH EVCGLKWS G LASGG+DN++ +W+ + +S S
Sbjct: 208 IFNHDVRIREHVTGKMAAHQQEVCGLKWSPSGQQLASGGNDNLLYVWDAAAAASRGNSTY 267
Query: 182 LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEW 241
LHR +H VKALAW P Q N+LA+GGG D CIK WN G CI +D +Q+C L+W
Sbjct: 268 LHRLDEHQAAVKALAWCPFQSNLLASGGGTADRCIKFWNTHTGACIQSVDTASQVCALQW 327
Query: 242 NRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA 301
++H +E+LS HGFS N+L LWKYP+M K+ EL SR+L ++QSPDG TVA+A
Sbjct: 328 SKHERELLSSHGFSQ----NQLILWKYPSMVKMAELTGHTSRVLHMAQSPDGYTVASAAG 383
Query: 302 DETIRFWEAFG 312
DET+RFW+ FG
Sbjct: 384 DETLRFWQVFG 394
|
Source: Selaginella moellendorffii Species: Selaginella moellendorffii Genus: Selaginella Family: Selaginellaceae Order: Selaginellales Class: Isoetopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|303279881|ref|XP_003059233.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459069|gb|EEH56365.1| predicted protein [Micromonas pusilla CCMP1545] | Back alignment and taxonomy information |
|---|
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 156/311 (50%), Positives = 211/311 (67%), Gaps = 9/311 (2%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQV--PGEDDYPTS 63
RILDAP L++DYY +IDWG +N +AVALG ++LW E G +++L Q EDDY TS
Sbjct: 32 RILDAPELIDDYYLNLIDWGASNQVAVALGCTVYLWNAETGDIQQLCQTNQDNEDDYVTS 91
Query: 64 VSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK 123
VSW D K +AVG +++Q+WDA K VR L GH RV +WN G L +GS+D
Sbjct: 92 VSWGGDGKHVAVGTNGAEVQIWDASRLKQVRTLRGHSARVGALAWN---GTQLATGSRDN 148
Query: 124 SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLH 183
+I+ HDVRV + T+ + +H+ EVCGLKW+ GN LASGG+DN++ I++ + +S+S LH
Sbjct: 149 NIMMHDVRVREHCTATLTSHTQEVCGLKWAPSGNQLASGGNDNLLHIYDANSISNSTHLH 208
Query: 184 RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNR 243
R H VKALAW P Q N+LA+GGG D CIK WN G ++ ID +Q+C L+WN+
Sbjct: 209 RLDAHQAAVKALAWCPFQSNLLASGGGTADRCIKFWNTNTGAMLNSIDTHSQVCALQWNK 268
Query: 244 HHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADE 303
H +E+LS HG+S N+LCLWKYP MTK+ EL +R+L ++QSPDG +V +A ADE
Sbjct: 269 HERELLSSHGYSQ----NQLCLWKYPTMTKMAELTGHTARVLHMAQSPDGTSVVSAAADE 324
Query: 304 TIRFWEAFGPS 314
T+RFW+ F S
Sbjct: 325 TLRFWKCFSES 335
|
Source: Micromonas pusilla CCMP1545 Species: Micromonas pusilla Genus: Micromonas Family: Order: Mamiellales Class: Mamiellophyceae Phylum: Chlorophyta Superkingdom: Eukaryota |
| >gi|307104119|gb|EFN52374.1| hypothetical protein CHLNCDRAFT_26822 [Chlorella variabilis] | Back alignment and taxonomy information |
|---|
Score = 324 bits (831), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 159/307 (51%), Positives = 208/307 (67%), Gaps = 11/307 (3%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
RILDAP L++DYY ++DW N +AVAL ++LW +G +++LL GED Y TS+S
Sbjct: 99 RILDAPDLVDDYYLNLLDWSSTNAVAVALNQAVYLWNASSGDIQELLSAQGED-YITSLS 157
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
W+ D K LAVGY + Q+WDAE K VRNL GH RV++ SWN+ H L++G +D I
Sbjct: 158 WAADGKHLAVGYSSALTQIWDAERCKPVRNLGGHAARVSSLSWNN---HTLSTGGRDSLI 214
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF 185
++HDVRV +VT+ ++ H EVCGLKWS G LASGG+DN++ IW+ ++ ++ HR
Sbjct: 215 LHHDVRVREHVTATLRGHEQEVCGLKWSPNGTQLASGGNDNLLMIWD---AAADRATHRI 271
Query: 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHH 245
T H VKALAW P Q N+LATGGG D IK N G ++ ID +Q+C L+WNRH
Sbjct: 272 TAHQAAVKALAWCPFQSNLLATGGGTADRTIKFHNTHTGALLNSIDTGSQVCSLQWNRHE 331
Query: 246 KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETI 305
+E+LS HGFS N+LCLWKYP+M KV EL SR+L L+QSPDG TV +A ADET+
Sbjct: 332 RELLSSHGFSQ----NQLCLWKYPSMAKVAELTGHTSRVLHLAQSPDGTTVVSAAADETL 387
Query: 306 RFWEAFG 312
RFW FG
Sbjct: 388 RFWRCFG 394
|
Source: Chlorella variabilis Species: Chlorella variabilis Genus: Chlorella Family: Chlorellaceae Order: Chlorellales Class: Trebouxiophyceae Phylum: Chlorophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 335 | ||||||
| TAIR|locus:2143636 | 411 | CDC20.5 "AT5G27570" [Arabidops | 0.895 | 0.729 | 0.461 | 6.8e-79 | |
| TAIR|locus:2119141 | 447 | CDC20.2 "AT4G33260" [Arabidops | 0.895 | 0.671 | 0.469 | 8.7e-79 | |
| TAIR|locus:2119151 | 457 | CDC20.1 "AT4G33270" [Arabidops | 0.895 | 0.656 | 0.469 | 8.7e-79 | |
| DICTYBASE|DDB_G0285601 | 499 | cdc20 "cdc20/fizzy domain-cont | 0.892 | 0.599 | 0.464 | 1.4e-78 | |
| UNIPROTKB|Q5ZI36 | 507 | CDC20 "Uncharacterized protein | 0.892 | 0.589 | 0.480 | 1.3e-77 | |
| TAIR|locus:2144372 | 466 | CDC20.3 "AT5G27080" [Arabidops | 0.892 | 0.641 | 0.466 | 4.3e-77 | |
| MGI|MGI:1859866 | 499 | Cdc20 "cell division cycle 20" | 0.892 | 0.599 | 0.469 | 5.5e-77 | |
| RGD|620477 | 499 | Cdc20 "cell division cycle 20" | 0.892 | 0.599 | 0.469 | 5.5e-77 | |
| UNIPROTKB|Q62623 | 499 | Cdc20 "Cell division cycle pro | 0.892 | 0.599 | 0.469 | 5.5e-77 | |
| UNIPROTKB|Q12834 | 499 | CDC20 "Cell division cycle pro | 0.892 | 0.599 | 0.472 | 7.1e-77 |
| TAIR|locus:2143636 CDC20.5 "AT5G27570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
Identities = 144/312 (46%), Positives = 206/312 (66%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
R+LDAP + +D+Y ++DWG +NVLA+ALG ++LW +G KL+ + E+ TS++
Sbjct: 82 RVLDAPGIADDFYLNLLDWGSSNVLAIALGDTVYLWDASSGSTYKLVTIDEEEGPVTSIN 141
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEG-HHRRVATSSWNHWNGHILTSGSKDKS 124
W+ D LA+G +S++QLWD +++ VR L G H RV + +WN+ HILT+G D
Sbjct: 142 WTQDGLDLAIGLDNSEVQLWDCVSNRQVRTLRGGHESRVGSLAWNN---HILTTGGMDGK 198
Query: 125 IINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS--- 181
I+N+DVR+ +++ H+ EVCGLKWS G LASGG+DNVV IW+ ++SS
Sbjct: 199 IVNNDVRIRSSIVETYLGHTEEVCGLKWSESGKKLASGGNDNVVHIWDHRSVASSNPTRQ 258
Query: 182 -LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLE 240
LHRF +H V+ALAW P Q ++LATGGG DG IK WN G C++ ++ +Q+C L
Sbjct: 259 WLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKIKFWNTHTGACLNSVETGSQVCSLL 318
Query: 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAG 300
W++ +E+LS HGF+ N+L LWKYP+M K+ EL SR+L ++QSPDG TVA+A
Sbjct: 319 WSKSERELLSSHGFTQ----NQLTLWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAA 374
Query: 301 ADETIRFWEAFG 312
DET+R W FG
Sbjct: 375 GDETLRLWNVFG 386
|
|
| TAIR|locus:2119141 CDC20.2 "AT4G33260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
Identities = 146/311 (46%), Positives = 208/311 (66%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
R LDAP +++D+Y ++DWG NVLA+AL ++LW G +L+ + E TS++
Sbjct: 120 RTLDAPDIVDDFYLNLLDWGSANVLAIALDHTVYLWDASTGSTSELVTIDEEKGPVTSIN 179
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHR-RVATSSWNHWNGHILTSGSKDKS 124
W+ D + +AVG +S++QLWD+ +++ +R L+G H+ RV + +WN+ HILT+G D
Sbjct: 180 WAPDGRHVAVGLNNSEVQLWDSASNRQLRTLKGGHQSRVGSLAWNN---HILTTGGMDGL 236
Query: 125 IINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS--- 181
IIN+DVR+ + + + H+ EVCGLKWS G LASGG+DNVV IW+RS SS+ +
Sbjct: 237 IINNDVRIRSPIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQW 296
Query: 182 LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEW 241
LHR +H VKALAW P Q N+LATGGG D IK WN G C++ +D +Q+C L W
Sbjct: 297 LHRLEEHTSAVKALAWCPFQANLLATGGGGGDRTIKFWNTHTGACLNSVDTGSQVCSLLW 356
Query: 242 NRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA 301
+++ +E+LS HGF+ N+L LWKYP+M K+ EL SR+L ++QSPDG TVA+A
Sbjct: 357 SKNERELLSSHGFTQ----NQLTLWKYPSMVKMAELTGHTSRVLYMAQSPDGCTVASAAG 412
Query: 302 DETIRFWEAFG 312
DET+RFW FG
Sbjct: 413 DETLRFWNVFG 423
|
|
| TAIR|locus:2119151 CDC20.1 "AT4G33270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
Identities = 146/311 (46%), Positives = 208/311 (66%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
R LDAP +++D+Y ++DWG NVLA+AL ++LW G +L+ + E TS++
Sbjct: 130 RTLDAPDIVDDFYLNLLDWGSANVLAIALDHTVYLWDASTGSTSELVTIDEEKGPVTSIN 189
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHR-RVATSSWNHWNGHILTSGSKDKS 124
W+ D + +AVG +S++QLWD+ +++ +R L+G H+ RV + +WN+ HILT+G D
Sbjct: 190 WAPDGRHVAVGLNNSEVQLWDSASNRQLRTLKGGHQSRVGSLAWNN---HILTTGGMDGL 246
Query: 125 IINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS--- 181
IIN+DVR+ + + + H+ EVCGLKWS G LASGG+DNVV IW+RS SS+ +
Sbjct: 247 IINNDVRIRSPIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQW 306
Query: 182 LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEW 241
LHR +H VKALAW P Q N+LATGGG D IK WN G C++ +D +Q+C L W
Sbjct: 307 LHRLEEHTSAVKALAWCPFQANLLATGGGGGDRTIKFWNTHTGACLNSVDTGSQVCSLLW 366
Query: 242 NRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA 301
+++ +E+LS HGF+ N+L LWKYP+M K+ EL SR+L ++QSPDG TVA+A
Sbjct: 367 SKNERELLSSHGFTQ----NQLTLWKYPSMVKMAELTGHTSRVLYMAQSPDGCTVASAAG 422
Query: 302 DETIRFWEAFG 312
DET+RFW FG
Sbjct: 423 DETLRFWNVFG 433
|
|
| DICTYBASE|DDB_G0285601 cdc20 "cdc20/fizzy domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
Identities = 142/306 (46%), Positives = 196/306 (64%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
RILDAP +++DYY ++DW NV+A+ LG ++LW ++++L QV +DDY TS+
Sbjct: 171 RILDAPDIVDDYYLNLLDWSSQNVIAIPLGQTVYLWNATTSEIQRLFQVEQQDDYITSLQ 230
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
W+ D LAVG +QLWD +K VR L GH RV +WN + IL+SGS D +I
Sbjct: 231 WTKDGNYLAVGTNSCTIQLWDVAHTKKVRELRGHAGRVGALAWNDY---ILSSGSSDTNI 287
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF 185
NHDVRV N+ S + HS EVCGLKWS++G LASGG+DN++ IW+ + + H F
Sbjct: 288 FNHDVRVQNHHVSTLSGHSQEVCGLKWSHDGGQLASGGNDNIINIWDINSENFETPAHTF 347
Query: 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHH 245
H V+ALAW P Q N+LATGGG D I+ WN G C++ +D +Q+C ++W+ +
Sbjct: 348 EQHTAAVRALAWCPFQPNLLATGGGAADRTIRFWNTITGVCLNTVDTMSQVCSIQWSTTY 407
Query: 246 KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETI 305
+E++S HG+S N+LC+WKYP+M K EL SR L + SPDG TV +A ADET+
Sbjct: 408 RELVSSHGYSQ----NQLCVWKYPSMVKCAELTGHTSRALHTAISPDGETVVSASADETL 463
Query: 306 RFWEAF 311
RFW F
Sbjct: 464 RFWRVF 469
|
|
| UNIPROTKB|Q5ZI36 CDC20 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 148/308 (48%), Positives = 202/308 (65%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
RILDAP + DYY +IDW N LAVAL ++LW G++ +LLQ+ DDY +SVS
Sbjct: 181 RILDAPEIRNDYYLNLIDWSSQNFLAVALDNCVYLWNHSTGEIIQLLQIENPDDYVSSVS 240
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
W + LAVG ++++QLWD + K +R++ H RV + SWN +IL+SGS+ I
Sbjct: 241 WIKEGNYLAVGTRNAEVQLWDVQQQKRLRSMTSHSSRVGSLSWN---SYILSSGSRTGHI 297
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSK--SLH 183
+HDVRV+ + + + H+ EVCGLKWS +G LASGG+DN+V IW + S +
Sbjct: 298 HHHDVRVAEHHVATLTGHTQEVCGLKWSLDGRYLASGGNDNLVNIWPSVQGDSGDFTPVQ 357
Query: 184 RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNR 243
FT H G VKA+AW P Q NVLATGGG D I+IWNV GTC+ +DA +Q+C + W+
Sbjct: 358 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGTCLSAVDAHSQVCSILWST 417
Query: 244 HHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADE 303
+KE +SGHGF+ N+L +WKYP M KV EL+ +R+L+L+ SPDG+TVA+A ADE
Sbjct: 418 TYKEFISGHGFAQ----NQLVIWKYPTMAKVTELRGHTARVLNLTMSPDGVTVASAAADE 473
Query: 304 TIRFWEAF 311
T+R W F
Sbjct: 474 TLRLWRCF 481
|
|
| TAIR|locus:2144372 CDC20.3 "AT5G27080" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
Identities = 146/313 (46%), Positives = 206/313 (65%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYP-TSV 64
R+LDAP LM+D+Y ++DWG NVLA+ALG ++LW +G +L+ + ED P TS+
Sbjct: 113 RVLDAPGLMDDFYLNLLDWGSANVLAIALGDTVYLWDASSGSTSELVTID-EDKGPVTSI 171
Query: 65 SWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL-EGHHRRVATSSWNHWNGHILTSGSKDK 123
+W+ D LAVG +S++QLWD +++ VR L GH RV + +WN+ HILT+G D
Sbjct: 172 NWTQDGLDLAVGLDNSEVQLWDFVSNRQVRTLIGGHESRVGSLAWNN---HILTTGGMDG 228
Query: 124 SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS-- 181
I+N+DVR+ +++ H+ EVCGLKWS G LASGG+ NVV IW+ ++SSK
Sbjct: 229 KIVNNDVRIRSSIVGTYLGHTEEVCGLKWSESGKKLASGGNYNVVHIWDHRSVASSKPTR 288
Query: 182 --LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGL 239
LHRF +H V+ALAW P Q +LATGGG DG IK WN G C++ ++ +Q+C L
Sbjct: 289 QWLHRFEEHTAAVRALAWCPFQATLLATGGGVGDGKIKFWNTHTGACLNSVETGSQVCSL 348
Query: 240 EWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATA 299
W++ +E+LS HGF+ N+L LWKYP+M+K+ EL SR+L ++QSP+G TVA+A
Sbjct: 349 LWSQRERELLSSHGFTQ----NQLTLWKYPSMSKMAELNGHTSRVLFMAQSPNGCTVASA 404
Query: 300 GADETIRFWEAFG 312
DE +R W FG
Sbjct: 405 AGDENLRLWNVFG 417
|
|
| MGI|MGI:1859866 Cdc20 "cell division cycle 20" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
Identities = 144/307 (46%), Positives = 201/307 (65%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
RILDAP + DYY ++DW NVLAVAL ++LW +G + +LLQ+ DY +SV+
Sbjct: 174 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWNAGSGDILQLLQMEQPGDYISSVA 233
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
W + LAVG ++++QLWD + K +RN+ H RV++ SWN +IL+SGS+ I
Sbjct: 234 WIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSHSARVSSLSWN---SYILSSGSRSGHI 290
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS-LHR 184
+HDVRV+ + + + HS EVCGL+W+ +G LASGG+DN+V +W S + L
Sbjct: 291 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGESGWAPLQT 350
Query: 185 FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRH 244
FT H G VKA+AW P Q N+LATGGG D I+IWNV G C+ +D +Q+C + W+ H
Sbjct: 351 FTQHQGAVKAVAWCPWQSNILATGGGTSDRHIRIWNVCSGACLSAVDVHSQVCSILWSPH 410
Query: 245 HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADET 304
+KE++SGHGF+ N+L +WKYP M KV EL+ +R+L L+ SPDG TVA+A ADET
Sbjct: 411 YKELISGHGFAQ----NQLVIWKYPTMAKVAELKGHTARVLGLTMSPDGATVASAAADET 466
Query: 305 IRFWEAF 311
+R W F
Sbjct: 467 LRLWRCF 473
|
|
| RGD|620477 Cdc20 "cell division cycle 20" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
Identities = 144/307 (46%), Positives = 200/307 (65%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
RILDAP + DYY ++DW NVLAVAL ++LW +G + +LLQ+ DY +SV+
Sbjct: 174 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWNAGSGDILQLLQMEQPGDYISSVA 233
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
W + LAVG ++++QLWD + K +RN+ H RV++ SWN +IL+SGS+ I
Sbjct: 234 WIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSHSARVSSLSWN---SYILSSGSRSGHI 290
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSS-KSLHR 184
+HDVRV+ + + + HS EVCGL+W+ +G LASGG+DN+V +W S L
Sbjct: 291 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGESGWVPLQT 350
Query: 185 FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRH 244
FT H G VKA+AW P Q N+LATGGG D I+IWNV G C+ +D +Q+C + W+ H
Sbjct: 351 FTQHQGAVKAVAWCPWQSNILATGGGTSDRHIRIWNVCSGACLSAVDVHSQVCSILWSPH 410
Query: 245 HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADET 304
+KE++SGHGF+ N+L +WKYP M KV EL+ +R+L L+ SPDG TVA+A ADET
Sbjct: 411 YKELISGHGFAQ----NQLVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADET 466
Query: 305 IRFWEAF 311
+R W F
Sbjct: 467 LRLWRCF 473
|
|
| UNIPROTKB|Q62623 Cdc20 "Cell division cycle protein 20 homolog" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
Identities = 144/307 (46%), Positives = 200/307 (65%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
RILDAP + DYY ++DW NVLAVAL ++LW +G + +LLQ+ DY +SV+
Sbjct: 174 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWNAGSGDILQLLQMEQPGDYISSVA 233
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
W + LAVG ++++QLWD + K +RN+ H RV++ SWN +IL+SGS+ I
Sbjct: 234 WIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSHSARVSSLSWN---SYILSSGSRSGHI 290
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSS-KSLHR 184
+HDVRV+ + + + HS EVCGL+W+ +G LASGG+DN+V +W S L
Sbjct: 291 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGESGWVPLQT 350
Query: 185 FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRH 244
FT H G VKA+AW P Q N+LATGGG D I+IWNV G C+ +D +Q+C + W+ H
Sbjct: 351 FTQHQGAVKAVAWCPWQSNILATGGGTSDRHIRIWNVCSGACLSAVDVHSQVCSILWSPH 410
Query: 245 HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADET 304
+KE++SGHGF+ N+L +WKYP M KV EL+ +R+L L+ SPDG TVA+A ADET
Sbjct: 411 YKELISGHGFAQ----NQLVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADET 466
Query: 305 IRFWEAF 311
+R W F
Sbjct: 467 LRLWRCF 473
|
|
| UNIPROTKB|Q12834 CDC20 "Cell division cycle protein 20 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
Identities = 145/307 (47%), Positives = 199/307 (64%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
RILDAP + DYY ++DW NVLAVAL ++LW +G + +LLQ+ +Y +SV+
Sbjct: 174 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVA 233
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
W + LAVG +++QLWD + K +RN+ H RV + SWN +IL+SGS+ I
Sbjct: 234 WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHI 290
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSS-KSLHR 184
+HDVRV+ + + + HS EVCGL+W+ +G LASGG+DN+V +W + L
Sbjct: 291 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 350
Query: 185 FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRH 244
FT H G VKA+AW P Q NVLATGGG D I+IWNV G C+ +DA +Q+C + W+ H
Sbjct: 351 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH 410
Query: 245 HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADET 304
+KE++SGHGF+ N+L +WKYP M KV EL+ SR+L L+ SPDG TVA+A ADET
Sbjct: 411 YKELISGHGFAQ----NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 466
Query: 305 IRFWEAF 311
+R W F
Sbjct: 467 LRLWRCF 473
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 335 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-44 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-33 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-32 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-26 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-16 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-13 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-11 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 9e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-04 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 2e-04 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 0.001 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 0.002 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 0.003 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.004 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.004 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 7e-44
Identities = 76/273 (27%), Positives = 134/273 (49%), Gaps = 17/273 (6%)
Query: 38 LFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97
+ +W E G++ + L+ V+ S D LA G D ++LWD ET + VR L
Sbjct: 33 IKVWDLETGELLRTLKGHTGPV--RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT 90
Query: 98 GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157
GH V++ ++ +G IL+S S+DK+I DV +T+ ++ H+ V + +S +G
Sbjct: 91 GHTSYVSSVAF-SPDGRILSSSSRDKTIKVWDVETGKCLTT-LRGHTDWVNSVAFSPDGT 148
Query: 158 LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIK 217
+AS D +++W+ + + K + T H G V ++A+SP +L++ DG IK
Sbjct: 149 FVASSSQDGTIKLWD---LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS---DGTIK 202
Query: 218 IWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE 276
+W++ G C+ + + + ++ + S S DG + +W V
Sbjct: 203 LWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL-----ASGSEDG-TIRVWDLRTGECVQT 256
Query: 277 LQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309
L + + L+ SPDG +A+ AD TIR W+
Sbjct: 257 LSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 3e-33
Identities = 65/248 (26%), Positives = 119/248 (47%), Gaps = 15/248 (6%)
Query: 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK 121
T V++S D K LA G D +++WD ET +L+R L+GH V + + ++ SGS
Sbjct: 13 TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA-SGSS 71
Query: 122 DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS 181
DK+I D+ + + H+ V + +S +G +L+S D +++W+ + + K
Sbjct: 72 DKTIRLWDLE-TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD---VETGKC 127
Query: 182 LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLE 240
L H V ++A+SP +A+ DG IK+W+++ G C+ + ++ +
Sbjct: 128 LTTLRGHTDWVNSVAFSPDG-TFVASSSQ--DGTIKLWDLRTGKCVATLTGHTGEVNSVA 184
Query: 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAG 300
++ G +S + LW +G L+ + + ++ SPDG +A+
Sbjct: 185 FSP------DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS 238
Query: 301 ADETIRFW 308
D TIR W
Sbjct: 239 EDGTIRVW 246
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 124 bits (311), Expect = 5e-32
Identities = 79/289 (27%), Positives = 136/289 (47%), Gaps = 13/289 (4%)
Query: 25 GRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQ 83
G+ +L + LW GK L G D +S+++S D L D ++
Sbjct: 167 GKLLASGSSLDGTIKLWDLRTGKPLSTLA--GHTDPVSSLAFSPDGGLLIASGSSDGTIR 224
Query: 84 LWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH 143
LWD T KL+R+ H SS+ +G +L SGS D +I D+R S+++ + H
Sbjct: 225 LWDLSTGKLLRSTLSGHSDSVVSSF-SPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283
Query: 144 SGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203
S V + +S +G LLASG D VR+W+ + S H G V +L++SP
Sbjct: 284 SSSVLSVAFSPDGKLLASGSSDGTVRLWD-LETGKLLSSLTLKGHEGPVSSLSFSPDGSL 342
Query: 204 VLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKL 263
+++ G +DG I++W+++ G + ++ + + + ++ + + SG +
Sbjct: 343 LVSGGS--DDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSG------STDGTV 394
Query: 264 CLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312
LW + + L SR+ L SPDG ++A+ +D TIR W+
Sbjct: 395 RLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 109 bits (271), Expect = 1e-26
Identities = 83/299 (27%), Positives = 144/299 (48%), Gaps = 17/299 (5%)
Query: 38 LFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVG-YMDSKLQLWDAETSKLVRNL 96
+ LW K + + G + TS+++S D K LA G +D ++LWD T K + L
Sbjct: 136 VKLWDLST-PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL 194
Query: 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156
GH V++ +++ G ++ SGS D +I D+ + S + HS V +S +G
Sbjct: 195 AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDG 253
Query: 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCI 216
+LLASG D +R+W+ SSS L + H V ++A+SP +LA+G DG +
Sbjct: 254 SLLASGSSDGTIRLWDLR--SSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGS--SDGTV 308
Query: 217 KIWNVQKGTCIHGIDAKA---QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273
++W+++ G + + K + L ++ ++SG D + LW
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG-----GSDDGTIRLWDLRTGKP 363
Query: 274 VGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332
+ L+ ++ +L +S SPDG V++ D T+R W+ S + H + + SL S
Sbjct: 364 LKTLEGHSN-VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFS 421
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 4e-21
Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 13/172 (7%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
+K H+G V + +S +G LLA+G D +++W + + + L H G V+ +A S
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVW---DLETGELLRTLKGHTGPVRDVAASA 61
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGI-DAKAQICGLEWNRHHKEILSGHGFSASG 258
LA+G D I++W+++ G C+ + + + + ++ + ILS S
Sbjct: 62 DG-TYLASGS--SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR-ILSS-----SS 112
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ +W + L+ + ++ SPDG VA++ D TI+ W+
Sbjct: 113 RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.8 bits (190), Expect = 8e-16
Identities = 68/292 (23%), Positives = 130/292 (44%), Gaps = 23/292 (7%)
Query: 27 NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSW-SHDAKTLAV--GYMDSKLQ 83
+L+ + + LW +NG+ D + ++ S D ++ + +D ++
Sbjct: 78 ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137
Query: 84 LWDAETS-KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA 142
LWD T KL+R LEGH V + +++ + + S D +I D+R +++ +
Sbjct: 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST-LAG 196
Query: 143 HSGEVCGLKWSNEGN-LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQ 201
H+ V L +S +G L+ASG D +R+W +S+ K L ++SP
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLW---DLSTGKLLRSTLSGHSDSVVSSFSPDG 253
Query: 202 VNVLATGGGREDGCIKIWNVQKGTCIHGIDA--KAQICGLEWNRHHKEILSGHGFSASGD 259
++LA+G DG I++W+++ + + + + + + ++ K + SG
Sbjct: 254 -SLLASGS--SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG------SS 304
Query: 260 GNKLCLWKYPNMTKVGEL--QSSNSRILDLSQSPDGLTVATAGA-DETIRFW 308
+ LW + L + + LS SPDG + + G+ D TIR W
Sbjct: 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 3e-13
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 10/130 (7%)
Query: 181 SLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIH-GIDAKAQICGL 239
H GGV +A+SP +LATG G DG IK+W+++ G + + +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDG-KLLATGSG--DGTIKVWDLETGELLRTLKGHTGPVRDV 57
Query: 240 EWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATA 299
+ + SG + LW V L S + ++ SPDG ++++
Sbjct: 58 AASADGTYLASG------SSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS 111
Query: 300 GADETIRFWE 309
D+TI+ W+
Sbjct: 112 SRDKTIKVWD 121
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.3 bits (160), Expect = 5e-12
Identities = 42/201 (20%), Positives = 76/201 (37%), Gaps = 9/201 (4%)
Query: 111 WNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170
G + + + V + + + ++ H + + +S +G LL SG D +++
Sbjct: 32 SLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKL 91
Query: 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK-GTCIHG 229
W+ H V LA S N + DG +K+W++ G I
Sbjct: 92 WD-LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT 150
Query: 230 IDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLS 288
++ + L ++ K + S S + LW + L + L+
Sbjct: 151 LEGHSESVTSLAFSPDGKLL-----ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA 205
Query: 289 QSPDG-LTVATAGADETIRFW 308
SPDG L +A+ +D TIR W
Sbjct: 206 FSPDGGLLIASGSSDGTIRLW 226
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.8 bits (151), Expect = 7e-11
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 4/169 (2%)
Query: 15 EDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLA 74
S + + + + LW E GK+ L + G + +S+S+S D L
Sbjct: 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV 344
Query: 75 VGYM-DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVS 133
G D ++LWD T K ++ LEGH S +G +++SGS D ++ D+
Sbjct: 345 SGGSDDGTIRLWDLRTGKPLKTLEGHSN--VLSVSFSPDGRVVSSGSTDGTVRLWDLSTG 402
Query: 134 NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL 182
+ + + + H+ V L +S +G LASG DN +R+W+ S S
Sbjct: 403 SLLRN-LDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-06
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 133 SNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172
S + +K H+G V + +S +G LASG DD +++W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-06
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171
+K H+G V + +S +GNLLASG DD VR+W
Sbjct: 7 LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 9e-05
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 178 SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWN 220
S + L H G V ++A+SP LA+G +DG IK+W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDG-KYLASGS--DDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 1e-04
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 180 KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWN 220
K L H G V ++A+SP N+LA+G +DG +++W+
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDG-NLLASGS--DDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 45/200 (22%), Positives = 95/200 (47%), Gaps = 23/200 (11%)
Query: 142 AHSGEVCGLKWSNE-GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH 200
A ++ G+ W++ + +AS + VV++W+ ++ S+ + +H V ++ +S
Sbjct: 530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWD---VARSQLVTEMKEHEKRVWSIDYSSA 586
Query: 201 QVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDG 260
+LA+G +DG +K+W++ +G I I KA IC +++ SG +
Sbjct: 587 DPTLLASGS--DDGSVKLWSINQGVSIGTIKTKANICCVQFPSE-----SGRSLAFGSAD 639
Query: 261 NKLCLW-----KYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE-AFGPS 314
+K+ + K P T +G +S+ + + D T+ ++ D T++ W+ + S
Sbjct: 640 HKVYYYDLRNPKLPLCTMIG-----HSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSIS 694
Query: 315 GDEDSVSH-LAGLVSLKTSV 333
G ++ H G ++K V
Sbjct: 695 GINETPLHSFMGHTNVKNFV 714
|
Length = 793 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.001
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 85 WDAETSKLVRN-------LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT 137
W L +N L+GH ++V S++ ++L S D + DV V
Sbjct: 103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE 162
Query: 138 SCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE--RSKMSSSKSLH 183
IK HS ++ L+W+ +G+LL + D + I + + SS H
Sbjct: 163 V-IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209
|
Length = 493 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.002
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 175 KMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA 234
+ S + H V +++ P +NVLA+ G D + +W+V++G + I +
Sbjct: 111 TQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA--DMVVNVWDVERGKAVEVIKCHS 168
Query: 235 -QICGLEWN 242
QI LEWN
Sbjct: 169 DQITSLEWN 177
|
Length = 493 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (90), Expect = 0.003
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 62 TSVSWSHDAKT-LAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS 120
+ + W+ K+ +A + +Q+WD S+LV ++ H +RV + ++ + +L SGS
Sbjct: 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS 595
Query: 121 KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172
D S+ + ++ + IK + C S G LA G D+ V ++
Sbjct: 596 DDGSVKLWSINQGVSIGT-IKTKANICCVQFPSESGRSLAFGSADHKVYYYD 646
|
Length = 793 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 34.2 bits (79), Expect = 0.004
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 270 NMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309
+ + L+ + ++ SPDG +A+ D TI+ W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 34.3 bits (79), Expect = 0.004
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 271 MTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
+ L+ + ++ SPDG +A+ D T+R W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.004
Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 20/155 (12%)
Query: 70 AKTLAVGYMDSKLQLWDA----ETSKLVRN----LEGHHRRVATSSWNHWNGHILTSGSK 121
++ LA G D +++W+ E+ K +++ L+GH ++++ WN N +I+ S
Sbjct: 87 SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF 146
Query: 122 DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS 181
D + D+ ++ LKW+ +GNLL+ + I + K + S
Sbjct: 147 DSFVNIWDIENEKRAFQINMPK--KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS 204
Query: 182 LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCI 216
H H GG + N+ G G +D I
Sbjct: 205 FHI---HDGG-------KNTKNIWIDGLGGDDNYI 229
|
Length = 568 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 335 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 100.0 | |
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 100.0 | |
| PTZ00420 | 568 | coronin; Provisional | 100.0 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 100.0 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 100.0 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 100.0 | |
| PTZ00420 | 568 | coronin; Provisional | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 100.0 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 100.0 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 100.0 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 100.0 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.98 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.97 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.97 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.97 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.97 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.97 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.97 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.97 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.97 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.97 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.97 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.96 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.96 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.96 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.95 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.95 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.95 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.95 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.95 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.95 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.94 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.94 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.94 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.94 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.94 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.93 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.93 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.93 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.93 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.93 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.93 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.93 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.92 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.92 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.92 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.92 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.92 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.92 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.91 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.9 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.9 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.9 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.89 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.89 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.89 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.89 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.89 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.89 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.89 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.88 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.88 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.87 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.87 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.87 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.87 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.86 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.86 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.85 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.84 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.84 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.84 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.84 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.84 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.84 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.84 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.83 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.83 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.83 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.82 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.82 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.82 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.81 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.81 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.81 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.8 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.8 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.8 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.8 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.79 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.79 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.79 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.79 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.79 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.78 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.78 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.78 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.78 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.77 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.76 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.76 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.76 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.76 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.75 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.75 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.75 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.75 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.74 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.74 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.73 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.72 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.72 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.71 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.7 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.7 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.69 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.68 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.68 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.68 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.68 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.66 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.66 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.64 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.64 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.63 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.62 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.62 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.6 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.6 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.6 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.6 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.59 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.57 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.56 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.55 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.54 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.53 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.51 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.51 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.51 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.5 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.47 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.47 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.45 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.45 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.44 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.44 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.44 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.41 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.38 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.38 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.36 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.36 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.36 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.36 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.35 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.35 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.34 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.32 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.3 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.3 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.29 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.28 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 99.28 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 99.28 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.28 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.27 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.26 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.25 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.24 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.23 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.23 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.22 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.2 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.19 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 99.14 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.13 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.12 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.11 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.09 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.03 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 99.01 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 99.01 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.99 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.97 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.96 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.93 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.91 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.91 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.91 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.9 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.89 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.89 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.89 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.89 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.87 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.85 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.84 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.81 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.81 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.79 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.78 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.77 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.75 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.74 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.72 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.71 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.69 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.66 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.64 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.63 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.63 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.62 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.62 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.61 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.6 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.53 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.52 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.51 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.5 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.5 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.49 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.46 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.45 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.44 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.4 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 98.37 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.35 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.32 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.28 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 98.21 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.2 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.15 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 98.14 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.08 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.07 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 98.02 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.99 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.98 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.97 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.96 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.92 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.89 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.89 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.85 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.82 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.81 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.76 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.75 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.69 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.69 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.69 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.66 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.63 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.6 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.6 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.55 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.54 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 97.49 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.47 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 97.46 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.42 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.4 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.39 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.38 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 97.35 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.34 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.28 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.23 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.19 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.16 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 97.13 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 97.12 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 97.01 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 97.0 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.99 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.9 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.89 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.85 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 96.78 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 96.74 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 96.69 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.67 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 96.63 | |
| PRK10115 | 686 | protease 2; Provisional | 96.61 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.61 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.6 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 96.59 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.42 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.42 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 96.32 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.32 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.31 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.31 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.3 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.28 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.28 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 96.27 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 96.24 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.24 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 96.21 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.18 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 96.09 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 96.09 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 96.09 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 95.96 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.92 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.83 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 95.74 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.66 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 95.64 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 95.62 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.61 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.6 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 95.58 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.47 | |
| PRK10115 | 686 | protease 2; Provisional | 95.46 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 95.4 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 95.17 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 95.05 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 94.96 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.87 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 94.77 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 94.67 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.54 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 94.46 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 94.41 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 94.33 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 94.22 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 94.17 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.1 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 93.79 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 93.73 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 93.67 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 93.05 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 93.05 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 93.04 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 93.0 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 92.89 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 92.85 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 92.81 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 92.78 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 92.66 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 92.57 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 92.56 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 92.53 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 92.45 | |
| PLN02193 | 470 | nitrile-specifier protein | 92.37 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 92.33 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 92.3 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 92.29 | |
| PLN02153 | 341 | epithiospecifier protein | 91.97 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 91.87 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 91.65 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 91.5 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 91.34 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 91.19 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 90.96 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 90.86 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 90.8 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 90.73 | |
| KOG3522 | 925 | consensus Predicted guanine nucleotide exchange fa | 90.67 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 90.45 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 90.26 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 89.61 | |
| COG4880 | 603 | Secreted protein containing C-terminal beta-propel | 89.58 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 89.33 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 89.12 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 89.06 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 88.95 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 88.29 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 88.2 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=320.27 Aligned_cols=310 Identities=20% Similarity=0.377 Sum_probs=269.8
Q ss_pred ccCCCCcccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEE
Q 019847 8 LDAPYLMEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLW 85 (335)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (335)
.......+...+.|+.|+|+ .+++++.|.++++||+.+... .++..+|...|.|++|+|||+.||+|+.||+|++|
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp--~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP--LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc--ceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 33445567888999999994 688888999999999998864 66778999999999999999999999999999999
Q ss_pred eCCCceeE-eeecccccceeEeeecCC----CCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEE
Q 019847 86 DAETSKLV-RNLEGHHRRVATSSWNHW----NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLA 160 (335)
Q Consensus 86 ~~~~~~~~-~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 160 (335)
|.++|+++ +.+.+|...|++++|.|. ..++|++++.||.++|||+..+. ....+.+|..+|+|++|--+ .+++
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG~-gliy 262 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGGE-GLIY 262 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcCC-ceEE
Confidence 99988765 568999999999999762 56799999999999999998544 57778999999999999765 4899
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEec-----------CCCC------------------------cEE
Q 019847 161 SGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWS-----------PHQV------------------------NVL 205 (335)
Q Consensus 161 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~------------------------~~~ 205 (335)
+|+.|++|++|+... +...+.+.+|...|+.++.+ |.+. ..+
T Consensus 263 SgS~DrtIkvw~a~d---G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl 339 (480)
T KOG0271|consen 263 SGSQDRTIKVWRALD---GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL 339 (480)
T ss_pred ecCCCceEEEEEccc---hhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence 999999999999665 56788889999999999887 2222 246
Q ss_pred EEecCCCCCeEEEEECCCC-ceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCc
Q 019847 206 ATGGGREDGCIKIWNVQKG-TCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSR 283 (335)
Q Consensus 206 ~~~~g~~d~~i~i~d~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 283 (335)
++++ .|.++.+|+.... +++..... ...++.+.|+|++++++++ +-|..|++||.++|+.+.++++|-+.
T Consensus 340 VSgs--Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASa------SFDkSVkLW~g~tGk~lasfRGHv~~ 411 (480)
T KOG0271|consen 340 VSGS--DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASA------SFDKSVKLWDGRTGKFLASFRGHVAA 411 (480)
T ss_pred EEec--CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEe------ecccceeeeeCCCcchhhhhhhccce
Confidence 6666 9999999997544 35555554 4579999999999999988 66999999999999999999999999
Q ss_pred eeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 284 ILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 284 i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
|..++|+.|.++|++|+.|.++++|++...+....+.+|.+.|..+.++
T Consensus 412 VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws 460 (480)
T KOG0271|consen 412 VYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS 460 (480)
T ss_pred eEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec
Confidence 9999999999999999999999999999999999999999999988775
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-50 Score=309.49 Aligned_cols=282 Identities=20% Similarity=0.389 Sum_probs=255.6
Q ss_pred CCcccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCC--CCEEEEEECCCcEEEEeC
Q 019847 12 YLMEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHD--AKTLAVGYMDSKLQLWDA 87 (335)
Q Consensus 12 ~~~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iw~~ 87 (335)
.+.++.++..+.|+.+ .+++++.+|.++||+..+... ...+.+|...|.++.|+|. +..+|+|+.||++++|++
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~--~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL--LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcce--eEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 4456677777888874 677888999999999988854 5567799999999999996 678999999999999999
Q ss_pred CCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCe
Q 019847 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNV 167 (335)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 167 (335)
++..++..+.+|...|..++|+| +|++|++++.|.+-++||+++...+. ...+|...|.+++|+|||.++++|+.|..
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL-~QEGHs~~v~~iaf~~DGSL~~tGGlD~~ 326 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELL-LQEGHSKGVFSIAFQPDGSLAATGGLDSL 326 (459)
T ss_pred CCCcchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhH-hhcccccccceeEecCCCceeeccCccch
Confidence 99999999999999999999999 99999999999999999999877644 46799999999999999999999999999
Q ss_pred EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC-cEeEEEeCC-CC
Q 019847 168 VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA-QICGLEWNR-HH 245 (335)
Q Consensus 168 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~-~~ 245 (335)
-+|||++++ ..+..+.+|..+|.++.|+|+| +.+++|+ .|++++|||++..+++..+..+. -|+.+.|+| .|
T Consensus 327 ~RvWDlRtg---r~im~L~gH~k~I~~V~fsPNG-y~lATgs--~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 327 GRVWDLRTG---RCIMFLAGHIKEILSVAFSPNG-YHLATGS--SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEG 400 (459)
T ss_pred hheeecccC---cEEEEecccccceeeEeECCCc-eEEeecC--CCCcEEEeeecccccceecccccchhhheEecccCC
Confidence 999999985 5588889999999999999999 6778876 89999999999999998888764 688999999 66
Q ss_pred ceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 246 KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
.+++++ +-|+++++|..++..+++++.+|.+.|.++.+++|++++++++.|.++++|.
T Consensus 401 ~fL~Ta------syD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 401 YFLVTA------SYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEEc------ccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 777766 6799999999999999999999999999999999999999999999999995
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-48 Score=317.23 Aligned_cols=304 Identities=48% Similarity=0.877 Sum_probs=283.3
Q ss_pred cccccccCCCCcccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcE
Q 019847 3 REARILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKL 82 (335)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (335)
.|++++++|.+.+|++.+-++|+...+++++.+..|++|+..+++...+..+. ...|+++.|+++|.+|++|..+|.|
T Consensus 164 ~p~rvLDaP~l~dDfY~nlldWss~n~laValg~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v 241 (484)
T KOG0305|consen 164 TPYRVLDAPGLQDDFYLNLLDWSSANVLAVALGQSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDGTV 241 (484)
T ss_pred ChhhhccCCcccccHhhhHhhcccCCeEEEEecceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCCeE
Confidence 57899999999999999999999999999999999999999999987776654 7889999999999999999999999
Q ss_pred EEEeCCCceeEeeecc-cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEE
Q 019847 83 QLWDAETSKLVRNLEG-HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLAS 161 (335)
Q Consensus 83 ~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 161 (335)
.|||..+.+.+..+.. |...|.+++| +...+.+|+.++.|..+|++..+.....+.+|...|..+.|++|++++|+
T Consensus 242 ~iwD~~~~k~~~~~~~~h~~rvg~laW---~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lAS 318 (484)
T KOG0305|consen 242 QIWDVKEQKKTRTLRGSHASRVGSLAW---NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLAS 318 (484)
T ss_pred EEEehhhccccccccCCcCceeEEEec---cCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeecc
Confidence 9999999999999998 9999999999 57899999999999999999888766678899999999999999999999
Q ss_pred EeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEe
Q 019847 162 GGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEW 241 (335)
Q Consensus 162 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 241 (335)
|+.|+.+.|||... ..+...+..|...|.+++|+|-...++|+|+|+.|+.|++||..+++.+..+.....|+++.|
T Consensus 319 GgnDN~~~Iwd~~~---~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~W 395 (484)
T KOG0305|consen 319 GGNDNVVFIWDGLS---PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIW 395 (484)
T ss_pred CCCccceEeccCCC---ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEE
Confidence 99999999999744 456778888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 242 NRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
++..+.++++.+ ..++.|.||++.+.+++..+.+|..+|..++++|||..+++|+.|.++++|++.+......
T Consensus 396 sk~~kEi~sthG----~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~~~~ 468 (484)
T KOG0305|consen 396 SKKYKELLSTHG----YSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDERPKST 468 (484)
T ss_pred cCCCCEEEEecC----CCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCCCCccc
Confidence 999999998865 4588999999999999999999999999999999999999999999999999998644443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-49 Score=301.42 Aligned_cols=274 Identities=23% Similarity=0.426 Sum_probs=243.0
Q ss_pred EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecc
Q 019847 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR 131 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 131 (335)
..+.+|.++|.|++|+|+|..|++|+.|.++++||+.+..+....++|...|.|++|+| +++.|++|+.||+|++||..
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSP-DGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECC-CcchhhccccCCeEEEecCC
Confidence 45679999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred cCCeeeEEeecCCCCEEEEEeec-----CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEE
Q 019847 132 VSNNVTSCIKAHSGEVCGLKWSN-----EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLA 206 (335)
Q Consensus 132 ~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 206 (335)
+++++...+.+|...|++++|.| ..++||+++.||.++|||+.. ...+..+.+|..+|+|+.|--+| ++.
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~---~~~~~~lsgHT~~VTCvrwGG~g--liy 262 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL---GTCVRTLSGHTASVTCVRWGGEG--LIY 262 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC---ceEEEEeccCccceEEEEEcCCc--eEE
Confidence 99999999999999999999976 568999999999999999775 56688889999999999997665 888
Q ss_pred EecCCCCCeEEEEECCCCceEEEeecCC-cEeEEEeC-----------CCCceee-------------------eeeeee
Q 019847 207 TGGGREDGCIKIWNVQKGTCIHGIDAKA-QICGLEWN-----------RHHKEIL-------------------SGHGFS 255 (335)
Q Consensus 207 ~~~g~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~-------------------~~~~~~ 255 (335)
+++ .|++|++|+...|.+.+.++.+. .|+.++.+ |.++..- .+..+.
T Consensus 263 SgS--~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV 340 (480)
T KOG0271|consen 263 SGS--QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV 340 (480)
T ss_pred ecC--CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence 877 99999999999999998888764 56666655 3343310 011244
Q ss_pred eecCCCeEEEEECCC-CceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceecc
Q 019847 256 ASGDGNKLCLWKYPN-MTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTSV 333 (335)
Q Consensus 256 ~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~~ 333 (335)
++++|.++.+|+... .+++..+.+|..-|+.+.||||++++|+++-|..|++|+..+++....+.+|.+.|..++++.
T Consensus 341 SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa 419 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA 419 (480)
T ss_pred EecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc
Confidence 558999999999755 458889999999999999999999999999999999999999999999999999999888763
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=278.66 Aligned_cols=278 Identities=21% Similarity=0.422 Sum_probs=250.3
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc--
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-- 90 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-- 90 (335)
+...+.+++|+++ ++++++.||.+.|||.-+......+++ ....|..++|+|.|+++|+|+.|+...||++.+.
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl--~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~ 131 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL--PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA 131 (343)
T ss_pred cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec--CceeEEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence 3456788999985 688899999999999887776565555 4788999999999999999999999999999865
Q ss_pred ----eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCC
Q 019847 91 ----KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDD 165 (335)
Q Consensus 91 ----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 165 (335)
+..+++.+|.+-+.++.|.+ ...|++++.|.++.+||++++++ ...+.+|.+.|.+++++| +++.+++|+-|
T Consensus 132 ~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~-~~~f~GH~gDV~slsl~p~~~ntFvSg~cD 208 (343)
T KOG0286|consen 132 EGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQ-TQVFHGHTGDVMSLSLSPSDGNTFVSGGCD 208 (343)
T ss_pred cccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceE-EEEecCCcccEEEEecCCCCCCeEEecccc
Confidence 45677899999999999984 77889999999999999997765 677899999999999999 99999999999
Q ss_pred CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC---CcEeEEEeC
Q 019847 166 NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK---AQICGLEWN 242 (335)
Q Consensus 166 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~ 242 (335)
+..++||+|.+ ...+.|.+|...|++++|.|+|. -+++|+ +|++.++||++..+.+..+.+. .++++++|+
T Consensus 209 ~~aklWD~R~~---~c~qtF~ghesDINsv~ffP~G~-afatGS--DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS 282 (343)
T KOG0286|consen 209 KSAKLWDVRSG---QCVQTFEGHESDINSVRFFPSGD-AFATGS--DDATCRLYDLRADQELAVYSHDSIICGITSVAFS 282 (343)
T ss_pred cceeeeeccCc---ceeEeecccccccceEEEccCCC-eeeecC--CCceeEEEeecCCcEEeeeccCcccCCceeEEEc
Confidence 99999999874 66899999999999999999995 666665 9999999999999999888864 479999999
Q ss_pred CCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 243 RHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
..|+++++| ..|..+.+||.-.++.+..+.+|..+|+++..+|||.-|++|+.|..++||.
T Consensus 283 ~SGRlLfag------y~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 283 KSGRLLFAG------YDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccccEEEee------ecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999988 5699999999999999999999999999999999999999999999999994
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=300.81 Aligned_cols=264 Identities=22% Similarity=0.400 Sum_probs=245.8
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCC-CCCEEEEeeCCCcEEEEecccCC
Q 019847 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW-NGHILTSGSKDKSIINHDVRVSN 134 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~ 134 (335)
+.+.+|..+.|+++++.|+||+.+|.+++|+..+...+..+.+|...+.++.|+|. ++..+++|+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 45788999999999999999999999999999999999999999999999999996 37799999999999999998554
Q ss_pred eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC
Q 019847 135 NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG 214 (335)
Q Consensus 135 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 214 (335)
++..+.+|...|..++|+|+|++|++++.|.+-++||+++. ..+....+|..+|.+++|.|||. ++++|+ .|.
T Consensus 253 -~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk---~ElL~QEGHs~~v~~iaf~~DGS-L~~tGG--lD~ 325 (459)
T KOG0272|consen 253 -PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK---SELLLQEGHSKGVFSIAFQPDGS-LAATGG--LDS 325 (459)
T ss_pred -chhhhhcchhhheeeeecCCCceeeecccccchhhcccccc---hhhHhhcccccccceeEecCCCc-eeeccC--ccc
Confidence 56778899999999999999999999999999999998874 45677789999999999999995 888887 999
Q ss_pred eEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcC-C
Q 019847 215 CIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSP-D 292 (335)
Q Consensus 215 ~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~ 292 (335)
.-+|||+++|+++..+..+ .+|.++.|+|+|..+++| +.|++++|||++..+.+.++.+|..-|+.+.|+| .
T Consensus 326 ~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATg------s~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 326 LGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATG------SSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE 399 (459)
T ss_pred hhheeecccCcEEEEecccccceeeEeECCCceEEeec------CCCCcEEEeeecccccceecccccchhhheEecccC
Confidence 9999999999999999876 489999999999999998 7899999999999999999999999999999999 6
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 293 GLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 293 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
|.+|+|++.|++++||.-.+......+.+|...|.++..+
T Consensus 400 g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis 439 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS 439 (459)
T ss_pred CeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec
Confidence 8999999999999999999999999999999999988764
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-46 Score=274.48 Aligned_cols=282 Identities=21% Similarity=0.394 Sum_probs=241.5
Q ss_pred ccccceeeeec---CCceEEEecCCeEEEEEecCCcee---eEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC
Q 019847 15 EDYYSKVIDWG---RNNVLAVALGPVLFLWKWENGKVK---KLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE 88 (335)
Q Consensus 15 ~~~~~~~~~~~---~~~~~~~~~~~~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 88 (335)
+...++.++-. ++.++.++.|..+.+|++...... ....+.+|...|..+..++||++.++++.|+.+++||+.
T Consensus 14 h~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~ 93 (315)
T KOG0279|consen 14 HTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLA 93 (315)
T ss_pred CCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEec
Confidence 34445555544 357888899999999998754332 356778999999999999999999999999999999999
Q ss_pred CceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee-cCCCCEEEEEeecC--CCEEEEEeCC
Q 019847 89 TSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK-AHSGEVCGLKWSNE--GNLLASGGDD 165 (335)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~--~~~l~~~~~d 165 (335)
+++..+.|.+|...|.+++|++ ++..+++|+.|.+|++|+...... ..... .+...|+|++|+|+ ..+|++++.|
T Consensus 94 ~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D 171 (315)
T KOG0279|consen 94 TGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPNESNPIIVSASWD 171 (315)
T ss_pred CCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCCCCCcEEEEccCC
Confidence 9999999999999999999999 999999999999999999974433 33333 23788999999996 7899999999
Q ss_pred CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCC
Q 019847 166 NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHH 245 (335)
Q Consensus 166 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (335)
++|++||+++ .+....+.+|.+.++.++++|||. +.++|+ .||.+.+||++.++.+..+++...|.+++|+|+.
T Consensus 172 ktvKvWnl~~---~~l~~~~~gh~~~v~t~~vSpDGs-lcasGg--kdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr 245 (315)
T KOG0279|consen 172 KTVKVWNLRN---CQLRTTFIGHSGYVNTVTVSPDGS-LCASGG--KDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR 245 (315)
T ss_pred ceEEEEccCC---cchhhccccccccEEEEEECCCCC-EEecCC--CCceEEEEEccCCceeEeccCCCeEeeEEecCCc
Confidence 9999999887 455778889999999999999995 777776 9999999999999999999999999999999999
Q ss_pred ceeeeeeeeeeecCCCeEEEEECCCCceeecccC----C-----CCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 246 KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS----S-----NSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~----~-----~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
..++.+ .+..|+|||+.++..+.+++. . .....+++|++||..|++|-.|+.|++|.+.
T Consensus 246 ywL~~a-------t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 246 YWLCAA-------TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eeEeec-------cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 888765 366799999999888776642 1 2235778999999999999999999999875
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=257.87 Aligned_cols=285 Identities=19% Similarity=0.309 Sum_probs=240.9
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce--eEeeecccccceeE
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK--LVRNLEGHHRRVAT 105 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~ 105 (335)
.+++++.|.+|++|...+|.+...++ ...+.|+.+.+.|++++||+++.. .|++||+++++ ++..+.+|...|++
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiq--h~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQ--HPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEe--cCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEE
Confidence 46778899999999999999866554 456789999999999999999754 79999998764 58899999999999
Q ss_pred eeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeec
Q 019847 106 SSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF 185 (335)
Q Consensus 106 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 185 (335)
+.|.. +++.+++|++||+++|||++... .+....|..+|+++..+|+...|++|..+|.|++||+........+ .
T Consensus 89 VgF~~-dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l--i 163 (311)
T KOG0315|consen 89 VGFQC-DGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL--I 163 (311)
T ss_pred EEEee-cCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc--C
Confidence 99999 99999999999999999999633 3444568899999999999999999999999999999875332222 2
Q ss_pred cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce------EEEeec-CCcEeEEEeCCCCceeeeeeeeeeec
Q 019847 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC------IHGIDA-KAQICGLEWNRHHKEILSGHGFSASG 258 (335)
Q Consensus 186 ~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (335)
.....+|.++...|+|..+++.- ..|..++|++-+.+. +..++. ...+..+.+||++++++++ +
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~n---nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~------s 234 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAAN---NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC------S 234 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEec---CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEee------c
Confidence 23446799999999998766654 689999999977543 334443 4578999999999999988 7
Q ss_pred CCCeEEEEECCCC-ceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccc
Q 019847 259 DGNKLCLWKYPNM-TKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSL 329 (335)
Q Consensus 259 ~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~ 329 (335)
.|.+++||+.++. +....+++|...+.+.+||.||+||+||+.|+.+++|++..++......+|.....+.
T Consensus 235 sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~ 306 (311)
T KOG0315|consen 235 SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCV 306 (311)
T ss_pred CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEE
Confidence 8999999999987 6667788999999999999999999999999999999999999888888887655443
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=254.44 Aligned_cols=269 Identities=19% Similarity=0.351 Sum_probs=243.5
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEec
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 130 (335)
...+++|...|+++.|++|.++|++++.||.+.|||.-+...+..+......|..++|+| .++++++|+-|+...||++
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEec
Confidence 456789999999999999999999999999999999999999999998899999999999 9999999999999999999
Q ss_pred ccC--C---eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEE
Q 019847 131 RVS--N---NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVL 205 (335)
Q Consensus 131 ~~~--~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 205 (335)
.+. + +..+.+.+|.+.+.++.|-+| ..|++++.|.+..+||+++ .+.+..+.+|.+.|.++.++|...+.+
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~---g~~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIET---GQQTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEccc---ceEEEEecCCcccEEEEecCCCCCCeE
Confidence 854 2 356678899999999999875 6789999999999999887 456888999999999999999555677
Q ss_pred EEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC--CC
Q 019847 206 ATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS--NS 282 (335)
Q Consensus 206 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~ 282 (335)
++|+ -|+..++||++.+.+++.|..+ ..|+++.|.|+|..+++| ++|++.++||++..+.+..+... ..
T Consensus 203 vSg~--cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatG------SDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 203 VSGG--CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATG------SDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred Eecc--cccceeeeeccCcceeEeecccccccceEEEccCCCeeeec------CCCceeEEEeecCCcEEeeeccCcccC
Confidence 7776 8999999999999999999875 589999999999998888 89999999999999988877632 34
Q ss_pred ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 283 RILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 283 ~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
+|++++||..|++|++|..|..+.+||.-.++....+.+|...|.++..+
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s 324 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS 324 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC
Confidence 79999999999999999999999999999999999999999999888654
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=269.50 Aligned_cols=283 Identities=21% Similarity=0.393 Sum_probs=249.6
Q ss_pred CCCcccccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC
Q 019847 11 PYLMEDYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE 88 (335)
Q Consensus 11 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 88 (335)
...+....+++++|+. +.++++..||.+++|+..... ...+..|..+|.++.|+..|+||++++.||++.+||..
T Consensus 230 ~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l---~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~ 306 (524)
T KOG0273|consen 230 KSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL---ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAH 306 (524)
T ss_pred ccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchh---hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEecc
Confidence 4556667899999995 456677799999999986654 34567899999999999999999999999999999999
Q ss_pred CceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeE
Q 019847 89 TSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVV 168 (335)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (335)
+++..+.+.-|..+-..+.|. +...|++++.|+.|+++.+.... +...+.+|.++|.++.|+|.+.+|++++.|+++
T Consensus 307 ~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tl 383 (524)
T KOG0273|consen 307 TGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDR-PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTL 383 (524)
T ss_pred CceEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecCCC-cceeeecccCceEEEEECCCCceEEEecCCCee
Confidence 999999999998888889997 67789999999999999998555 466778899999999999999999999999999
Q ss_pred EEEEccCCCcccceeeccCCCCCeeEEEecCCCC--------cEEEEecCCCCCeEEEEECCCCceEEEe-ecCCcEeEE
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQV--------NVLATGGGREDGCIKIWNVQKGTCIHGI-DAKAQICGL 239 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~ 239 (335)
+||.... ......+..|...|..+.|+|.++ ..+++++ .|++|++||+..+.++..+ ++..+|.++
T Consensus 384 kiWs~~~---~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas--~dstV~lwdv~~gv~i~~f~kH~~pVysv 458 (524)
T KOG0273|consen 384 KIWSMGQ---SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS--FDSTVKLWDVESGVPIHTLMKHQEPVYSV 458 (524)
T ss_pred EeeecCC---CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee--cCCeEEEEEccCCceeEeeccCCCceEEE
Confidence 9999665 445777888999999999999764 3455555 7999999999999999999 677899999
Q ss_pred EeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 240 EWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
+|+|+|+++++| +.||.|++|+.++++.++.+.+.. .|..++|+.+|.+|..+-.||.+.+-|+.
T Consensus 459 afS~~g~ylAsG------s~dg~V~iws~~~~~l~~s~~~~~-~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 459 AFSPNGRYLASG------SLDGCVHIWSTKTGKLVKSYQGTG-GIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EecCCCcEEEec------CCCCeeEeccccchheeEeecCCC-eEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999 779999999999999999987654 49999999999999999999999998875
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=258.66 Aligned_cols=281 Identities=23% Similarity=0.401 Sum_probs=250.0
Q ss_pred ccccceeeeecCCceEE--EecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC-ce
Q 019847 15 EDYYSKVIDWGRNNVLA--VALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET-SK 91 (335)
Q Consensus 15 ~~~~~~~~~~~~~~~~~--~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~ 91 (335)
....+..+-++|...+. ++.|.+|++||..++++ ...+.+|.+.+..++|+..|++|++++.|=.+++||.++ .+
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~ 184 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFR 184 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHH
Confidence 44566777788875444 44699999999999998 456779999999999999999999999998899999987 57
Q ss_pred eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEE
Q 019847 92 LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
+++.+.+|...|.++.|-| .++++++++.|.+|+.|++.++.+ +..+.+|...|..++.+.||.++|+++.|.++++|
T Consensus 185 c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~c-v~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 185 CIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYC-VKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW 262 (406)
T ss_pred HHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEeccccee-EEeccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence 7888889999999999999 889999999999999999997776 66789999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCC--------------CCcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcE
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPH--------------QVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQI 236 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~ 236 (335)
-+.+. .....+..|+.+|.+++|.|. +..++.+++ .|++|++||+.++.++.++..+ +-|
T Consensus 263 ~~~t~---~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S--rDktIk~wdv~tg~cL~tL~ghdnwV 337 (406)
T KOG0295|consen 263 VVATK---QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS--RDKTIKIWDVSTGMCLFTLVGHDNWV 337 (406)
T ss_pred Eeccc---hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec--ccceEEEEeccCCeEEEEEeccccee
Confidence 97764 345666789999999999874 224666666 9999999999999999999865 579
Q ss_pred eEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 237 CGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
..++|+|.|+++++. .+|+++++||++++++...+.+|..-++++.|+.+..+++||+-|..+++|.-
T Consensus 338 r~~af~p~Gkyi~Sc------aDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 338 RGVAFSPGGKYILSC------ADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeEEcCCCeEEEEE------ecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999988 78999999999999999999999999999999999999999999999999974
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=266.10 Aligned_cols=284 Identities=21% Similarity=0.436 Sum_probs=243.8
Q ss_pred cccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 14 MEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
.-...+..+.|.++ ++++++..|.+.+|+..+-.. ..-+..|.++|+++.|++++.++++|..+|.|++|+..- .
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF--EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-n 170 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF--ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-N 170 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceeeH--HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-h
Confidence 34567888999985 789999999999999754433 223468999999999999999999999999999999764 4
Q ss_pred eEeeecccc-cceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 92 LVRNLEGHH-RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 92 ~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
.++.+..|. ..|++++|+| ++..|++++.||+|+|||.....+ ...+.+|.-.|.+++|+|...++++++.|..|++
T Consensus 171 nVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~ke-e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKl 248 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKL 248 (464)
T ss_pred hhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCch-hheeccCCCCcceeccCCccceeEEccCCceeEe
Confidence 455555555 9999999999 899999999999999999986655 5557899999999999999999999999999999
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceee
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEIL 249 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 249 (335)
||.++ ..++.++..|+..|..+.|+|++ .++++++ .|..++++|+++.+.+..++. ...+.++.|+|-...++
T Consensus 249 WDprS---g~cl~tlh~HKntVl~~~f~~n~-N~Llt~s--kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lf 322 (464)
T KOG0284|consen 249 WDPRS---GSCLATLHGHKNTVLAVKFNPNG-NWLLTGS--KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLF 322 (464)
T ss_pred ecCCC---cchhhhhhhccceEEEEEEcCCC-CeeEEcc--CCceEEEEehhHhHHHHHhhcchhhheeeccccccccce
Confidence 99776 55688888999999999999999 5666655 999999999998888888884 56899999999888775
Q ss_pred eeeeeeeecCCCeEEEEECCCCceeeccc-CCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 250 SGHGFSASGDGNKLCLWKYPNMTKVGELQ-SSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+. ++.||.|..|.+...+++..+. +|...|.+++|+|-|.+|++|+.|.++++|.-..+
T Consensus 323 ts-----gg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 323 TS-----GGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred ee-----ccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 43 4789999999999666666654 79999999999999999999999999999976554
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=237.84 Aligned_cols=279 Identities=20% Similarity=0.402 Sum_probs=229.1
Q ss_pred cceeeeecCC---ceEEEecCCeEEEEEecCCc-eeeEEee-cCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc--
Q 019847 18 YSKVIDWGRN---NVLAVALGPVLFLWKWENGK-VKKLLQV-PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-- 90 (335)
Q Consensus 18 ~~~~~~~~~~---~~~~~~~~~~i~vw~~~~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-- 90 (335)
.+-.++|++. .+++++.|+.|++|+...+. ......+ .+|+..|++++|+|.|++||+|+.|.++.||.-..+
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef 95 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF 95 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCce
Confidence 5677999997 36667789999999988432 2222222 579999999999999999999999999999986644
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC--eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN--NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVV 168 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (335)
+++..+++|+..|.+++|++ ++++||++++|+.|-+|.+.... .+...+++|...|..+.|+|...+|++++.|.+|
T Consensus 96 ecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTI 174 (312)
T KOG0645|consen 96 ECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTI 174 (312)
T ss_pred eEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeE
Confidence 77889999999999999999 99999999999999999998544 3567789999999999999998999999999999
Q ss_pred EEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCcee
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEI 248 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (335)
++|+-.........+++.+|...|.+++|+|.|.+++.+ + .|++++||...+.- ...+..++..+.|. ...+
T Consensus 175 k~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~-s--dD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~--~~~I 246 (312)
T KOG0645|consen 175 KVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSC-S--DDGTVSIWRLYTDL---SGMHSRALYDVPWD--NGVI 246 (312)
T ss_pred EEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEe-c--CCcceEeeeeccCc---chhcccceEeeeec--ccce
Confidence 999977566778899999999999999999999665554 4 89999999866221 11234678888888 4455
Q ss_pred eeeeeeeeecCCCeEEEEECCCC------ceee-cccCCCCceeEeEEcCC-CCEEEEEeCCCcEEEEecC
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNM------TKVG-ELQSSNSRILDLSQSPD-GLTVATAGADETIRFWEAF 311 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~------~~~~-~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iw~~~ 311 (335)
+++ +.|+.|++|.-... +.+. .-..|...|++++|+|. ..+|++|+.||.|++|.+.
T Consensus 247 aS~------ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 247 ASG------GGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred Eec------cCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 555 77999999976532 1122 33578889999999994 6789999999999999875
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=261.37 Aligned_cols=306 Identities=19% Similarity=0.388 Sum_probs=249.8
Q ss_pred ccccceeeeecC--C-ceEEEecCCeEEEEEecC--Cceee------EEeec----CCCCCceEEEEcCCCCEEEEEECC
Q 019847 15 EDYYSKVIDWGR--N-NVLAVALGPVLFLWKWEN--GKVKK------LLQVP----GEDDYPTSVSWSHDAKTLAVGYMD 79 (335)
Q Consensus 15 ~~~~~~~~~~~~--~-~~~~~~~~~~i~vw~~~~--~~~~~------~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d 79 (335)
+.-.+.+.+|+| + .+.+++.+...++|++.. ..... .+... ..+..|++++|+.+|..||+|+.|
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~ 256 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED 256 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence 455678899999 3 344455788999999874 11111 11111 124679999999999999999999
Q ss_pred CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEE
Q 019847 80 SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159 (335)
Q Consensus 80 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 159 (335)
|.+++|+. +|.++..+..|.++|.++.|+. .+++|++++.|+++.+||..++.. .+.+.-|+.+-..+.|-.+ .-+
T Consensus 257 G~~riw~~-~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~-~q~f~~~s~~~lDVdW~~~-~~F 332 (524)
T KOG0273|consen 257 GEARIWNK-DGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTV-KQQFEFHSAPALDVDWQSN-DEF 332 (524)
T ss_pred cEEEEEec-CchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceE-EEeeeeccCCccceEEecC-ceE
Confidence 99999996 5788889999999999999999 999999999999999999986554 6667778888788899755 568
Q ss_pred EEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC-cEeE
Q 019847 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA-QICG 238 (335)
Q Consensus 160 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-~~~~ 238 (335)
++++.|+.|+++.+.. ..+..++.+|.++|.++.|+|.+. |+++++ .|++++||++........+..+. .|..
T Consensus 333 ~ts~td~~i~V~kv~~---~~P~~t~~GH~g~V~alk~n~tg~-LLaS~S--dD~TlkiWs~~~~~~~~~l~~Hskei~t 406 (524)
T KOG0273|consen 333 ATSSTDGCIHVCKVGE---DRPVKTFIGHHGEVNALKWNPTGS-LLASCS--DDGTLKIWSMGQSNSVHDLQAHSKEIYT 406 (524)
T ss_pred eecCCCceEEEEEecC---CCcceeeecccCceEEEEECCCCc-eEEEec--CCCeeEeeecCCCcchhhhhhhccceee
Confidence 9999999999999775 466888889999999999999995 777777 89999999999888888887654 8999
Q ss_pred EEeCCCCcee---eeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 019847 239 LEWNRHHKEI---LSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 239 ~~~~~~~~~~---~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
+.|+|.|... -.+..+++++.|+.|++||+..+.++..+..|..+|.+++|+|+|+++|+|+.||.|.+|+...++.
T Consensus 407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe
Confidence 9999987532 1222345568899999999999999999999999999999999999999999999999999998877
Q ss_pred CCCcccccccccccee
Q 019847 316 DEDSVSHLAGLVSLKT 331 (335)
Q Consensus 316 ~~~~~~~~~~i~~~~~ 331 (335)
.....+ ..+|..+.+
T Consensus 487 ~~s~~~-~~~Ifel~W 501 (524)
T KOG0273|consen 487 VKSYQG-TGGIFELCW 501 (524)
T ss_pred eEeecC-CCeEEEEEE
Confidence 664433 333544443
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=278.86 Aligned_cols=253 Identities=24% Similarity=0.433 Sum_probs=225.8
Q ss_pred eEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc-------------------------------eeEeeecc
Q 019847 50 KLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-------------------------------KLVRNLEG 98 (335)
Q Consensus 50 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------------------------------~~~~~~~~ 98 (335)
..+++..-...++|..|++|+.+||.|..|..|++|.+... ...+.+.+
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 34444445567999999999999999999999999987631 12344678
Q ss_pred cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCc
Q 019847 99 HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSS 178 (335)
Q Consensus 99 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 178 (335)
|.++|..+.|+| +.++|++++.|+++++|.+.+... ...+.+|..+|+.+.|+|.|-+||+++.|++.++|....
T Consensus 450 H~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~-~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~--- 524 (707)
T KOG0263|consen 450 HSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSC-LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH--- 524 (707)
T ss_pred CCCceeeeeecc-cccceeeccCCcceeeeeccccee-EEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc---
Confidence 999999999999 999999999999999999997766 455779999999999999999999999999999999665
Q ss_pred ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeee
Q 019847 179 SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSAS 257 (335)
Q Consensus 179 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 257 (335)
..+++.+.+|.+.|.|+.|+|+.. ++++|+ .|.++|+||..+|..++.+.+| .+|.+++|+|+|+++++|
T Consensus 525 ~~PlRifaghlsDV~cv~FHPNs~-Y~aTGS--sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg------ 595 (707)
T KOG0263|consen 525 NKPLRIFAGHLSDVDCVSFHPNSN-YVATGS--SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASG------ 595 (707)
T ss_pred CCchhhhcccccccceEEECCccc-ccccCC--CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeec------
Confidence 567888999999999999999985 666665 9999999999999999999864 689999999999999998
Q ss_pred cCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 019847 258 GDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 258 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
++|+.|.+||+.+++++..+.+|.+.|.++.|+.||..||+|+.|..|++||+......
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 88999999999999999999999999999999999999999999999999999876554
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=249.81 Aligned_cols=286 Identities=21% Similarity=0.288 Sum_probs=238.9
Q ss_pred CcccccceeeeecCC-c-eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc
Q 019847 13 LMEDYYSKVIDWGRN-N-VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 13 ~~~~~~~~~~~~~~~-~-~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
..+...+.+++.+|+ . .++++.|..-.+|++.+++. ...+.+|++.|+++.|+.+|.+||+|..+|.|+||+..++
T Consensus 61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~--~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg 138 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF--AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG 138 (399)
T ss_pred hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc--eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC
Confidence 345556777777764 3 44456888999999999984 6677899999999999999999999999999999999999
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
.....+...-..+.-+.|+| ...+|++|+.||.+.+|.+.+. ...+.+.+|..++++=.|.|+|+.++++..||+|++
T Consensus 139 ~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 139 GEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred ceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCceEEEEecCceEEE
Confidence 98888876677888999999 9999999999999999999865 457888999999999999999999999999999999
Q ss_pred EEccCCCccccee----------------------------------------ecc--------CCCCCeeEEEecCCCC
Q 019847 171 WERSKMSSSKSLH----------------------------------------RFT--------DHCGGVKALAWSPHQV 202 (335)
Q Consensus 171 wd~~~~~~~~~~~----------------------------------------~~~--------~~~~~v~~~~~~~~~~ 202 (335)
||+.++.....+. ... .+...+.++.+.|...
T Consensus 217 Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 217 WNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred EecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence 9987653211111 000 1122233333333322
Q ss_pred --cEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC
Q 019847 203 --NVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 203 --~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 280 (335)
-|+++|+ .||+|.|||+...++.+..++...|..+.|-+ ..+++++ +.+|.|+.||.++|+++.++.+|
T Consensus 297 ~lpL~A~G~--vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~------c~~g~v~~wDaRtG~l~~~y~GH 367 (399)
T KOG0296|consen 297 KLPLAACGS--VDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTA------CANGKVRQWDARTGQLKFTYTGH 367 (399)
T ss_pred ccchhhccc--ccceEEEEecccchhheeccCCCceEEEEEcC-cchheee------ccCceEEeeeccccceEEEEecC
Confidence 2455554 99999999999999999999999999999999 7777776 66999999999999999999999
Q ss_pred CCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 281 NSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 281 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
...|.+++++|+.++++|+|.|++.+||+..
T Consensus 368 ~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 368 QMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999999864
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=236.02 Aligned_cols=264 Identities=17% Similarity=0.269 Sum_probs=229.1
Q ss_pred cccceeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEe
Q 019847 16 DYYSKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR 94 (335)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 94 (335)
+..++.+...++ +.++++....|++||+++++..+...+.+|+..|+.+.|..+|+.+++|+.||+++|||++...+-+
T Consensus 40 dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR 119 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR 119 (311)
T ss_pred ccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccch
Confidence 456777888874 6888888999999999999998999999999999999999999999999999999999999977666
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
.++ |..+|+++..+| +...|++|..+|.|++||+.+.............+|.++...|||.+++.+...|..++|++-
T Consensus 120 ~~~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 120 NYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred hcc-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 666 779999999999 888999999999999999987766555566667889999999999999999999999999986
Q ss_pred CCC---cccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-ceEEEeecC-CcEeEEEeCCCCceee
Q 019847 175 KMS---SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-TCIHGIDAK-AQICGLEWNRHHKEIL 249 (335)
Q Consensus 175 ~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~ 249 (335)
... ...++..++.|++.+..+.++|++++|++++ .|.+++||+.++. +....++.+ .-+..++||.+|.+++
T Consensus 198 ~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s---sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Ylv 274 (311)
T KOG0315|consen 198 NHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS---SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLV 274 (311)
T ss_pred CCCccccceEhhheecccceEEEEEECCCCcEEEeec---CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEE
Confidence 532 3455677889999999999999998666655 6999999999987 444455554 4689999999999999
Q ss_pred eeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEc
Q 019847 250 SGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQS 290 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 290 (335)
++ +.|+.+++|++..++.+....+|.....+++..
T Consensus 275 Ta------ssd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 275 TA------SSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ec------CCCCceeecccccCceeeecCCcccccEEEEee
Confidence 98 779999999999999999999998887777653
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=266.67 Aligned_cols=288 Identities=18% Similarity=0.388 Sum_probs=244.7
Q ss_pred ccccceeeeecC-CceEEEecC--CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 15 EDYYSKVIDWGR-NNVLAVALG--PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 15 ~~~~~~~~~~~~-~~~~~~~~~--~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
.+..+..++|+. +.-++.++. |.+.||++++... +++.++|...+++++++|||+++|+|+.||.|+|||...+-
T Consensus 306 s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY--VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf 383 (893)
T KOG0291|consen 306 SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY--VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF 383 (893)
T ss_pred ccceeeEEEecccCCEEEEcCCccceEEEEEeeccce--eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce
Confidence 356677888884 344554433 5999999998875 56677999999999999999999999999999999999999
Q ss_pred eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC-eEEE
Q 019847 92 LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN-VVRI 170 (335)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i 170 (335)
+..+|..|...|+.+.|+. .++.+++++-||+|+.||+...........+..-...|++..|.|.++.+|+.|. .|.+
T Consensus 384 C~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~Ifv 462 (893)
T KOG0291|consen 384 CFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFV 462 (893)
T ss_pred EEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEE
Confidence 9999999999999999999 9999999999999999999877765544444555678999999999999999886 5999
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-ceEEEeecCCcEeEEEeCCCCceee
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-TCIHGIDAKAQICGLEWNRHHKEIL 249 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (335)
|++++ ++.+..+.+|++||.+++|+|.+. ++++++ .|.+|++||+-.. ..+.+++....+..++|.|+|+.++
T Consensus 463 WS~qT---GqllDiLsGHEgPVs~l~f~~~~~-~LaS~S--WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~ela 536 (893)
T KOG0291|consen 463 WSVQT---GQLLDILSGHEGPVSGLSFSPDGS-LLASGS--WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELA 536 (893)
T ss_pred EEeec---CeeeehhcCCCCcceeeEEccccC-eEEecc--ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEE
Confidence 99877 566888899999999999999996 777766 9999999998543 5677888889999999999999999
Q ss_pred eeeeeeeecCCCeEEEEECCCCceeecccC--------------------CCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 250 SGHGFSASGDGNKLCLWKYPNMTKVGELQS--------------------SNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--------------------~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
+. +-||.|.+||...+..+..+.+ ....++.+++++||..+++||....|.+|+
T Consensus 537 Va------TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 537 VA------TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred EE------EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 87 5699999999987666544321 224689999999999999999999999999
Q ss_pred cCCCCCCC
Q 019847 310 AFGPSGDE 317 (335)
Q Consensus 310 ~~~~~~~~ 317 (335)
+..+-...
T Consensus 611 v~~~vllk 618 (893)
T KOG0291|consen 611 VPEGVLLK 618 (893)
T ss_pred Cchhheee
Confidence 98764443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=256.75 Aligned_cols=279 Identities=26% Similarity=0.497 Sum_probs=241.6
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
+...+.+++|+++ .+++++.++.+++|++++++.. ..+..|...+..+.|+|+++++++++.+|.|++|++.+++.
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~ 85 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC 85 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE--EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc
Confidence 4467889999984 4556667999999999988743 34557888899999999999999999999999999999888
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 172 (335)
+..+..|...+.++.|++ ++.++++++.++.+.+||+++.+. ...+..|...+.+++|+|++.++++++.|+.|++||
T Consensus 86 ~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d 163 (289)
T cd00200 86 VRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKC-LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD 163 (289)
T ss_pred eEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEE-EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEE
Confidence 888888999999999999 788888888899999999985543 555668899999999999989999888899999999
Q ss_pred ccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEe-ecCCcEeEEEeCCCCceeeee
Q 019847 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI-DAKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 251 (335)
++.. +.+..+..|...+.++.|+|++..+++++ .++.+++||+++++.+..+ .+...+.++.|+|++..++++
T Consensus 164 ~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 164 LRTG---KCVATLTGHTGEVNSVAFSPDGEKLLSSS---SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred cccc---ccceeEecCccccceEEECCCcCEEEEec---CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 8754 34555667888999999999997666654 5999999999999888888 455689999999997777765
Q ss_pred eeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 252 HGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 252 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
+.++.+++||+.+++....+..|...|.+++|+|++++|++++.||.+++|+
T Consensus 238 ------~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 ------SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ------cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 5699999999999999999999999999999999999999999999999996
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=237.17 Aligned_cols=255 Identities=18% Similarity=0.302 Sum_probs=218.1
Q ss_pred eeEEeecCCCCCceEEEEcCC-CCEEEEEECCCcEEEEeCC-----CceeEeeecccccceeEeeecCCCCCEEEEeeCC
Q 019847 49 KKLLQVPGEDDYPTSVSWSHD-AKTLAVGYMDSKLQLWDAE-----TSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122 (335)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 122 (335)
...-.+++|++.|+.++..+. .+.+++++.|.++.+|++. .|..++.+++|...|..+..++ ++++.++++.|
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD 84 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWD 84 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc-CCceEEecccc
Confidence 344567899999999999986 5688899999999999875 4677899999999999999999 99999999999
Q ss_pred CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccC--CCCCeeEEEecCC
Q 019847 123 KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD--HCGGVKALAWSPH 200 (335)
Q Consensus 123 g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~ 200 (335)
+.+++||+.+++ ..+.+.+|...|.+++|++|.+.+++|+.|.+|++|++.... ..+... +.+.|.|+.|+|+
T Consensus 85 ~~lrlWDl~~g~-~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c----k~t~~~~~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 85 GTLRLWDLATGE-STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC----KYTIHEDSHREWVSCVRFSPN 159 (315)
T ss_pred ceEEEEEecCCc-EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE----EEEEecCCCcCcEEEEEEcCC
Confidence 999999999774 577789999999999999999999999999999999977532 222222 3788999999999
Q ss_pred C-CcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc
Q 019847 201 Q-VNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ 278 (335)
Q Consensus 201 ~-~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 278 (335)
. .-++++++ .|+++++||+++.+....+..+ ..++.++++|||...++| +.||.+.+||++.++.+..+.
T Consensus 160 ~~~p~Ivs~s--~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG------gkdg~~~LwdL~~~k~lysl~ 231 (315)
T KOG0279|consen 160 ESNPIIVSAS--WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG------GKDGEAMLWDLNEGKNLYSLE 231 (315)
T ss_pred CCCcEEEEcc--CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC------CCCceEEEEEccCCceeEecc
Confidence 4 34666665 9999999999999988887765 579999999999999987 899999999999999987764
Q ss_pred CCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc
Q 019847 279 SSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 279 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 319 (335)
|...|.+++|+|+.-.|+.+. +..|+|||+.......++
T Consensus 232 -a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 232 -AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEEL 270 (315)
T ss_pred -CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhc
Confidence 667899999999987776665 456999999998766554
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=253.55 Aligned_cols=305 Identities=20% Similarity=0.288 Sum_probs=246.6
Q ss_pred ccccceeeeecCC---ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 15 EDYYSKVIDWGRN---NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 15 ~~~~~~~~~~~~~---~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
+...++++++.+. ++++++.|+.|.+|+-..-+. ...+..|..-|.|+.|+|||+++++.+.||++.+||-.+++
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF--k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge 223 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF--KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE 223 (603)
T ss_pred cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeee--eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc
Confidence 4556788888874 688889999999998655554 34556899999999999999999999999999999999999
Q ss_pred eEeeec---ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC----------------------------------
Q 019847 92 LVRNLE---GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN---------------------------------- 134 (335)
Q Consensus 92 ~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---------------------------------- 134 (335)
.+..+. +|.+.|.+++|+| ++..+++++.|.++++||+.+..
T Consensus 224 ~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i 302 (603)
T KOG0318|consen 224 KVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI 302 (603)
T ss_pred EEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence 999998 8999999999999 99999999999999999986543
Q ss_pred --------eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccc--------e----------------
Q 019847 135 --------NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS--------L---------------- 182 (335)
Q Consensus 135 --------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------~---------------- 182 (335)
.+...+.+|...|+++..+|++.+|++|+.||.|.-||...+...+. +
T Consensus 303 n~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~ 382 (603)
T KOG0318|consen 303 NYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGW 382 (603)
T ss_pred EEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEec
Confidence 12234568999999999999999999999999999999754322110 0
Q ss_pred ----e------------------------------------------eccC--------CCCCeeEEEecCCCCcEEEEe
Q 019847 183 ----H------------------------------------------RFTD--------HCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 183 ----~------------------------------------------~~~~--------~~~~v~~~~~~~~~~~~~~~~ 208 (335)
+ .+.. -.-...+++++|++. .++.|
T Consensus 383 Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~-~vaVG 461 (603)
T KOG0318|consen 383 DDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS-EVAVG 461 (603)
T ss_pred CCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC-EEEEe
Confidence 0 0000 011245677788774 56666
Q ss_pred cCCCCCeEEEEECCCCce---EEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceee-cccCCCCce
Q 019847 209 GGREDGCIKIWNVQKGTC---IHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVG-ELQSSNSRI 284 (335)
Q Consensus 209 ~g~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~i 284 (335)
+ .|+.+++|.+..+.. ...+++..++++++++|++.+++++ ...+.+.+||+.+.+... .+.-|...|
T Consensus 462 G--~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~------Da~rkvv~yd~~s~~~~~~~w~FHtakI 533 (603)
T KOG0318|consen 462 G--QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAG------DASRKVVLYDVASREVKTNRWAFHTAKI 533 (603)
T ss_pred c--ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEe------ccCCcEEEEEcccCceecceeeeeeeeE
Confidence 5 999999999987653 3455678899999999999999988 568999999999877633 234599999
Q ss_pred eEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC-cccccccccccee
Q 019847 285 LDLSQSPDGLTVATAGADETIRFWEAFGPSGDED-SVSHLAGLVSLKT 331 (335)
Q Consensus 285 ~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~i~~~~~ 331 (335)
.+++|+|+..++|||+-|-.|.||+++.+..... .-.|..+|.++.+
T Consensus 534 ~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~w 581 (603)
T KOG0318|consen 534 NCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAW 581 (603)
T ss_pred EEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEE
Confidence 9999999999999999999999999999866543 3478877877765
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=247.00 Aligned_cols=282 Identities=21% Similarity=0.365 Sum_probs=245.1
Q ss_pred ccccceeeeecCC-c-eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGRN-N-VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~~-~-~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
+..++.|+++.|. . +++++.|++++|||+.++++ ..++.+|-..|..+++|+-..|+++++.|+.|+.||++..+.
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L--kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL--KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV 227 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE--EEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhh
Confidence 5678999999984 3 56677899999999999987 456779999999999999999999999999999999999999
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 172 (335)
++.+.+|-..|.+++.+| .-+.|++|+.|.++++||+++... +..+.+|..+|.++.+.|-...+++|+.|++|++||
T Consensus 228 IR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~-V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD 305 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRAS-VHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD 305 (460)
T ss_pred HHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccce-EEEecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence 999999999999999999 899999999999999999997765 667899999999999999778899999999999999
Q ss_pred ccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC-cEeEEEeCCCCceeeee
Q 019847 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA-QICGLEWNRHHKEILSG 251 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 251 (335)
++.+ +....+..|+..+.+++.+|.. +++++++ ...|+-|++..|..+..+..+. .+.++....++-++ +|
T Consensus 306 l~ag---kt~~tlt~hkksvral~lhP~e-~~fASas---~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~-~G 377 (460)
T KOG0285|consen 306 LRAG---KTMITLTHHKKSVRALCLHPKE-NLFASAS---PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLV-SG 377 (460)
T ss_pred eccC---ceeEeeecccceeeEEecCCch-hhhhccC---CccceeccCCccchhhccccccceeeeeeeccCceEE-Ec
Confidence 8874 4577778899999999999987 5777764 5679999999999988877654 67888888777544 34
Q ss_pred eeeeeecCCCeEEEEECCCCceeecccC--------CCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 252 HGFSASGDGNKLCLWKYPNMTKVGELQS--------SNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 252 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
+++|.+.+||.+++...+..+. .+..|.+.+|...|..|++|..|.+|++|+-+...
T Consensus 378 ------~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 378 ------GDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHA 442 (460)
T ss_pred ------CCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccccc
Confidence 7899999999998876655421 23468999999999999999999999999877643
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=272.65 Aligned_cols=284 Identities=25% Similarity=0.444 Sum_probs=242.2
Q ss_pred cccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeC-CCcee
Q 019847 16 DYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDA-ETSKL 92 (335)
Q Consensus 16 ~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~-~~~~~ 92 (335)
...+.++.++++ .+++++.++.+++|+....+......+.+|...|.+++|+|+++++++++.|++|+|||+ ..+..
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~ 238 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN 238 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence 455677788874 455566899999999976662223444789999999999999999999999999999999 55689
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 172 (335)
++.+++|...|++++|+| .++++++|+.|++|++||+++ ..+...+.+|.+.|++++|++++++|++++.|+.|++||
T Consensus 239 ~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~-~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRT-GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWD 316 (456)
T ss_pred EEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccC-CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence 999999999999999999 779999999999999999997 455788999999999999999999999999999999999
Q ss_pred ccCCCcccceeeccCCCC--CeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC----cEeEEEeCCCCc
Q 019847 173 RSKMSSSKSLHRFTDHCG--GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA----QICGLEWNRHHK 246 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~ 246 (335)
+.++... ....+.++.. +++++.|+|++.++++.. .|+.+++||++.+.....+..+. .+.+...++.++
T Consensus 317 ~~~~~~~-~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~---~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (456)
T KOG0266|consen 317 LETGSKL-CLKLLSGAENSAPVTSVQFSPNGKYLLSAS---LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK 392 (456)
T ss_pred CCCCcee-eeecccCCCCCCceeEEEECCCCcEEEEec---CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCC
Confidence 8876522 2344444444 599999999998777755 79999999999998888876543 344555678888
Q ss_pred eeeeeeeeeeecCCCeEEEEECCCCceeecccCC-CCceeEeEEcCCCCEEEEEe--CCCcEEEEecC
Q 019847 247 EILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS-NSRILDLSQSPDGLTVATAG--ADETIRFWEAF 311 (335)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~--~dg~v~iw~~~ 311 (335)
++++| +.|+.|++||..++..+..+.+| ...+..+.++|..+++++++ .|+.+++|...
T Consensus 393 ~i~sg------~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 393 LIYSG------SEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eEEEE------eCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 88887 78999999999999999999999 88899999999999999998 78999999765
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=253.13 Aligned_cols=274 Identities=18% Similarity=0.310 Sum_probs=243.5
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEec
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 130 (335)
...+.+|..+|+.+-|+|+-..+++++.|++|++||..++++...+++|...+..++|+. .+.++++++.|-.+++||.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEec-CccEEEecCCccchhheeH
Confidence 345568999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC
Q 019847 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210 (335)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 210 (335)
.+.....+.+.+|+..|.+++|-|.|.++++++.|.+|+.|++.+ ...+.++.+|...|.-+..+.|| .++++++
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t---g~cv~t~~~h~ewvr~v~v~~DG-ti~As~s- 254 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT---GYCVKTFPGHSEWVRMVRVNQDG-TIIASCS- 254 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc---ceeEEeccCchHhEEEEEecCCe-eEEEecC-
Confidence 876666777889999999999999999999999999999999887 45688999999999999999999 5888877
Q ss_pred CCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCcee----eee-----eeeeeecCCCeEEEEECCCCceeecccCC
Q 019847 211 REDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEI----LSG-----HGFSASGDGNKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 211 ~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 280 (335)
.|.++++|-+.++++...++. ..++.+++|.|...+- +++ ..+.+++.|++|++||+.++.++.++.+|
T Consensus 255 -~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh 333 (406)
T KOG0295|consen 255 -NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH 333 (406)
T ss_pred -CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc
Confidence 999999999999988777764 4578888888765431 222 23556688999999999999999999999
Q ss_pred CCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcccccccccccee
Q 019847 281 NSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 281 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~ 331 (335)
...|..++|+|.|+||+++.+|+++++||+...+.......|..-+.++.+
T Consensus 334 dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf 384 (406)
T KOG0295|consen 334 DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF 384 (406)
T ss_pred cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEec
Confidence 999999999999999999999999999999999988877777776666655
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=236.72 Aligned_cols=280 Identities=17% Similarity=0.311 Sum_probs=240.7
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
+...+..+.|+|+ .+++++.|..|.+|++.. .+.....+.+|.++|..+.|.+|++.+++++.|.+++.||+++|+.
T Consensus 46 h~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g-dceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~ 124 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG-DCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR 124 (338)
T ss_pred CcceEEEEEECCCCCeEeecCCcceEEEEeccc-cccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccccee
Confidence 4566777888884 467778999999999643 3445667789999999999999999999999999999999999999
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 172 (335)
.+.++.|...+..+.-+.....++.+++.|+++++||++.... .+.+ ...-+++++.|..++..+.+|+-|+.|++||
T Consensus 125 ~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~-~~kyqltAv~f~d~s~qv~sggIdn~ikvWd 202 (338)
T KOG0265|consen 125 IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTF-ENKYQLTAVGFKDTSDQVISGGIDNDIKVWD 202 (338)
T ss_pred eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhcc-ccceeEEEEEecccccceeeccccCceeeec
Confidence 9999999999999996665667888999999999999996654 3322 3456799999999999999999999999999
Q ss_pred ccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC----ceEEEeecC-----CcEeEEEeCC
Q 019847 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG----TCIHGIDAK-----AQICGLEWNR 243 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~----~~~~~~~~~-----~~~~~~~~~~ 243 (335)
++.. ..+..+.+|..+|+.+..+|+|.+++.-+ .|.++++||++.. +++..+..+ .....+.|+|
T Consensus 203 ~r~~---d~~~~lsGh~DtIt~lsls~~gs~llsns---Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 203 LRKN---DGLYTLSGHADTITGLSLSRYGSFLLSNS---MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred cccC---cceEEeecccCceeeEEeccCCCcccccc---ccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 8864 45888899999999999999998777754 8999999999753 446666543 2467789999
Q ss_pred CCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 244 HHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
++..+.+| +.|..+++||......+..+.+|.+.|.+++|+|...+|.+++.|.+|++=+
T Consensus 277 ~~~~i~ag------s~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 277 NGTKITAG------SADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCCccccc------cccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 99999887 6799999999999999999999999999999999999999999999998743
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=269.86 Aligned_cols=242 Identities=25% Similarity=0.413 Sum_probs=212.1
Q ss_pred ccccceeeeecCC-ceEEEe-cCCeEEEEEecCCce-----------------------------eeEEeecCCCCCceE
Q 019847 15 EDYYSKVIDWGRN-NVLAVA-LGPVLFLWKWENGKV-----------------------------KKLLQVPGEDDYPTS 63 (335)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~~~-~~~~i~vw~~~~~~~-----------------------------~~~~~~~~~~~~v~~ 63 (335)
....++|..++++ .++|++ .|..|++|.+...++ .....+-+|.++|+.
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 3456788889885 555554 789999999874221 112335689999999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC
Q 019847 64 VSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH 143 (335)
Q Consensus 64 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 143 (335)
+.|+|+.++|++++.|+++|+|.+.+...+-.+++|..+|+.+.|+| .|.+|++++.|++-++|...... +.+.+.+|
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~-PlRifagh 534 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNK-PLRIFAGH 534 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCC-chhhhccc
Confidence 99999999999999999999999999999999999999999999999 99999999999999999998644 57888999
Q ss_pred CCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC
Q 019847 144 SGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 144 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 223 (335)
.+.|.|+.|+|+.+|+++||.|.++|+||+.++ ..++.|.+|.++|.+++|+|+|. .+++|+ .||.|.+||+.+
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G---~~VRiF~GH~~~V~al~~Sp~Gr-~LaSg~--ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG---NSVRIFTGHKGPVTALAFSPCGR-YLASGD--EDGLIKIWDLAN 608 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCC---cEEEEecCCCCceEEEEEcCCCc-eEeecc--cCCcEEEEEcCC
Confidence 999999999999999999999999999998875 45888899999999999999996 556655 999999999999
Q ss_pred CceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC
Q 019847 224 GTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 224 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
++.+..+.. .+.+.++.|+.+|..+++| +.|++|++||+..
T Consensus 609 ~~~v~~l~~Ht~ti~SlsFS~dg~vLasg------g~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 609 GSLVKQLKGHTGTIYSLSFSRDGNVLASG------GADNSVRLWDLTK 650 (707)
T ss_pred CcchhhhhcccCceeEEEEecCCCEEEec------CCCCeEEEEEchh
Confidence 999887765 4679999999999999988 7799999999865
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=258.05 Aligned_cols=302 Identities=20% Similarity=0.404 Sum_probs=256.8
Q ss_pred cceeeeecC--CceEEEecCCeEEEEEecC-----------------------Cce---------eeEEeecCCCCCceE
Q 019847 18 YSKVIDWGR--NNVLAVALGPVLFLWKWEN-----------------------GKV---------KKLLQVPGEDDYPTS 63 (335)
Q Consensus 18 ~~~~~~~~~--~~~~~~~~~~~i~vw~~~~-----------------------~~~---------~~~~~~~~~~~~v~~ 63 (335)
++.+.-|.. ..+++++.||.+.+|.... ++. .+..-+......|++
T Consensus 191 ~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvta 270 (893)
T KOG0291|consen 191 YVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTA 270 (893)
T ss_pred ceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceee
Confidence 344444444 4799999999999998861 110 001112223478999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCC-CcEEEEecccCCeeeEEeec
Q 019847 64 VSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD-KSIINHDVRVSNNVTSCIKA 142 (335)
Q Consensus 64 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~ 142 (335)
.+|++..+.|++|-..|...+|++....+++.+.-...+|..+.|+. .|+.|+.|+.. |.+.+|+.....- +...++
T Consensus 271 a~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~-tGDWiA~g~~klgQLlVweWqsEsY-VlKQQg 348 (893)
T KOG0291|consen 271 AAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNS-TGDWIAFGCSKLGQLLVWEWQSESY-VLKQQG 348 (893)
T ss_pred eeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecc-cCCEEEEcCCccceEEEEEeeccce-eeeccc
Confidence 99999999999999999999999999999999998889999999998 89999888754 8999999986554 555789
Q ss_pred CCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC
Q 019847 143 HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ 222 (335)
Q Consensus 143 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 222 (335)
|...+++++++|||+++|+|++||+|++||... ..++.++..|.+.|+.+.|+..+..+++++ .||+|+.||+.
T Consensus 349 H~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S---gfC~vTFteHts~Vt~v~f~~~g~~llssS---LDGtVRAwDlk 422 (893)
T KOG0291|consen 349 HSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS---GFCFVTFTEHTSGVTAVQFTARGNVLLSSS---LDGTVRAWDLK 422 (893)
T ss_pred cccceeeEEECCCCcEEEeccCCCcEEEEeccC---ceEEEEeccCCCceEEEEEEecCCEEEEee---cCCeEEeeeec
Confidence 999999999999999999999999999999765 567999999999999999999997665554 89999999999
Q ss_pred CCceEEEeecCCc--EeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEe
Q 019847 223 KGTCIHGIDAKAQ--ICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAG 300 (335)
Q Consensus 223 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 300 (335)
..+..+++..+.+ ..+++..|.|..+.+|. -+.-.|.+|++++|+.+-.+.+|+++|.+++|+|++..|++++
T Consensus 423 RYrNfRTft~P~p~QfscvavD~sGelV~AG~-----~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 423 RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA-----QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS 497 (893)
T ss_pred ccceeeeecCCCceeeeEEEEcCCCCEEEeec-----cceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc
Confidence 9999999987664 67899999999998873 3456799999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 301 ADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 301 ~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
.|.+|++|++.......+...+...+.+++|.
T Consensus 498 WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfr 529 (893)
T KOG0291|consen 498 WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFR 529 (893)
T ss_pred ccceEEEEEeeccCceeeeEeeccceeEEEEc
Confidence 99999999999988777777777777777764
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=254.49 Aligned_cols=260 Identities=21% Similarity=0.398 Sum_probs=225.9
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT 137 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 137 (335)
...|..+.|.|+|+.|++|+..|.+.+|+..+-.....++.|..+|+++.|++ ++..+++|+.+|.|++|+..... +.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmnn-Vk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMNN-VK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchhh-hH
Confidence 45789999999999999999999999999866665566788999999999999 99999999999999999987433 23
Q ss_pred EEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEE
Q 019847 138 SCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIK 217 (335)
Q Consensus 138 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (335)
.....|...|++++|+|+...|++++.||+|+|||.... +....+.+|.-.|.++.|+|.. .++++++ .|+.|+
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~---kee~vL~GHgwdVksvdWHP~k-gLiasgs--kDnlVK 247 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP---KEERVLRGHGWDVKSVDWHPTK-GLIASGS--KDNLVK 247 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC---chhheeccCCCCcceeccCCcc-ceeEEcc--CCceeE
Confidence 333345589999999999999999999999999997764 3445568899999999999987 4777776 899999
Q ss_pred EEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCC-CCE
Q 019847 218 IWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPD-GLT 295 (335)
Q Consensus 218 i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ 295 (335)
+||.++++++.++.. ...|..+.|+|++++|+++ +.|..+++||+++.+.+..+++|...+++++|+|- ..+
T Consensus 248 lWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~------skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 248 LWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTG------SKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESL 321 (464)
T ss_pred eecCCCcchhhhhhhccceEEEEEEcCCCCeeEEc------cCCceEEEEehhHhHHHHHhhcchhhheeeccccccccc
Confidence 999999999988865 4679999999999999988 88999999999999999999999999999999994 568
Q ss_pred EEEEeCCCcEEEEecCCC-CCCCCcccccccccccee
Q 019847 296 VATAGADETIRFWEAFGP-SGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 296 l~~~~~dg~v~iw~~~~~-~~~~~~~~~~~~i~~~~~ 331 (335)
|.+|+.||.|..|.+... +.......|...|.+++.
T Consensus 322 ftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~ 358 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAY 358 (464)
T ss_pred eeeccCCCceEEEeccccccccCCCcccccceeeeec
Confidence 889999999999999944 444455688888988865
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=266.95 Aligned_cols=262 Identities=27% Similarity=0.500 Sum_probs=231.3
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce--eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK--LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN 134 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 134 (335)
+...|.++.|+|+|+++++++.++.+++|+..+.+ ....+.+|...|..++|+| ++.++++++.|+++++||+....
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECC-CCcEEEEecCCceEEEeeccCCC
Confidence 47889999999999999999999999999998777 7777889999999999999 99999999999999999996666
Q ss_pred eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC
Q 019847 135 NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG 214 (335)
Q Consensus 135 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 214 (335)
...+.+.+|...|++++|+|+++++++|+.|++|++||+++ .+....+.+|.++|++++|++++..+++ ++ .|+
T Consensus 237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~---~~~~~~l~~hs~~is~~~f~~d~~~l~s-~s--~d~ 310 (456)
T KOG0266|consen 237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT---GECVRKLKGHSDGISGLAFSPDGNLLVS-AS--YDG 310 (456)
T ss_pred eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC---CeEEEeeeccCCceEEEEECCCCCEEEE-cC--CCc
Confidence 77888999999999999999999999999999999999887 5678889999999999999999965555 44 799
Q ss_pred eEEEEECCCCc--eEEEeecC--C-cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCc---eeE
Q 019847 215 CIKIWNVQKGT--CIHGIDAK--A-QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSR---ILD 286 (335)
Q Consensus 215 ~i~i~d~~~~~--~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~---i~~ 286 (335)
.|++||+.++. ++..+... . ++.++.|+|++++++++ ..|+.+++||+..+..+..+.+|... +.+
T Consensus 311 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~------~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~ 384 (456)
T KOG0266|consen 311 TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA------SLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFS 384 (456)
T ss_pred cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEe------cCCCeEEEEEccCCcceeeecccCCcceeEec
Confidence 99999999999 44555432 2 58999999999999988 67999999999999999999988774 444
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcccc-cccccccee
Q 019847 287 LSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSH-LAGLVSLKT 331 (335)
Q Consensus 287 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~~~i~~~~~ 331 (335)
...++.+.++++|+.|+.|++|++..........+| ...+..+.+
T Consensus 385 ~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~ 430 (456)
T KOG0266|consen 385 PTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSS 430 (456)
T ss_pred ccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceecccc
Confidence 556789999999999999999999998888888888 666655544
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=242.14 Aligned_cols=248 Identities=22% Similarity=0.399 Sum_probs=225.7
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccC
Q 019847 54 VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVS 133 (335)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 133 (335)
+.+|.+.|.|+++.|..+++++|+.|++|+|||+.++++..++.+|...|..+++++ ...++++++.|+.|+.||++..
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEEechhh
Confidence 468999999999999999999999999999999999999999999999999999999 8899999999999999999954
Q ss_pred CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC
Q 019847 134 NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213 (335)
Q Consensus 134 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 213 (335)
+ +++.+.+|-..|.+++.+|.-..|++|+.|.++++||+++ ...+..+.+|..+|.++.+.|.++.++..+ .|
T Consensus 226 k-vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt---r~~V~~l~GH~~~V~~V~~~~~dpqvit~S---~D 298 (460)
T KOG0285|consen 226 K-VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT---RASVHVLSGHTNPVASVMCQPTDPQVITGS---HD 298 (460)
T ss_pred h-hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc---cceEEEecCCCCcceeEEeecCCCceEEec---CC
Confidence 4 5777889999999999999989999999999999999987 456889999999999999999888766633 89
Q ss_pred CeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCC
Q 019847 214 GCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 214 ~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
++|++||++.|+....+.++ ..+.+++.+|....++++ ....|+-|++..+..++.+.+|..-|++++...|
T Consensus 299 ~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASa-------s~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD 371 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASA-------SPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSD 371 (460)
T ss_pred ceEEEeeeccCceeEeeecccceeeEEecCCchhhhhcc-------CCccceeccCCccchhhccccccceeeeeeeccC
Confidence 99999999999998888765 579999999999888775 3678999999999999999999999999999988
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 293 GLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 293 ~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
| ++++|+++|.+.+||..++..-+
T Consensus 372 ~-v~~~G~dng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 372 G-VLVSGGDNGSIMFWDWKSGHNYQ 395 (460)
T ss_pred c-eEEEcCCceEEEEEecCcCcccc
Confidence 7 78899999999999999875544
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=228.00 Aligned_cols=260 Identities=17% Similarity=0.278 Sum_probs=228.9
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEec
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 130 (335)
...+..++++|..+.|+-+|+|.++++.|.+|++|+...+.+++++.+|...|..++.+. ++..|++|+.|..+.+||+
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEc
Confidence 344568899999999999999999999999999999999999999999999999999988 9999999999999999999
Q ss_pred ccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC
Q 019847 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210 (335)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 210 (335)
++++. .+.+.+|.+.|+.++|+.+...+++|+.|.++++||.+.. ..++++.+......|.++.... ..+++|+
T Consensus 89 ~TGkv-~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~-s~ePiQildea~D~V~Si~v~~---heIvaGS- 162 (307)
T KOG0316|consen 89 NTGKV-DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR-SFEPIQILDEAKDGVSSIDVAE---HEIVAGS- 162 (307)
T ss_pred ccCee-eeecccccceeeEEEecCcceEEEeccccceeEEEEcccC-CCCccchhhhhcCceeEEEecc---cEEEeec-
Confidence 97765 6778999999999999999999999999999999999964 4678888888889999999875 3556655
Q ss_pred CCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCce--eEeE
Q 019847 211 REDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRI--LDLS 288 (335)
Q Consensus 211 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i--~~~~ 288 (335)
.||+++.||++.|+....+ ...+|+++.|+++++..+++ +-|+.+++.|-.+++.++.+++|...- ...+
T Consensus 163 -~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~------~l~stlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 163 -VDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLAS------SLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred -cCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEe------eccceeeecccchhHHHHHhcccccceeeeeee
Confidence 9999999999999875443 46789999999999999887 669999999999999999999998743 4456
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccc
Q 019847 289 QSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAG 325 (335)
Q Consensus 289 ~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~ 325 (335)
++.....+++|++||.|++||+.......+...+...
T Consensus 235 l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v 271 (307)
T KOG0316|consen 235 LNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV 271 (307)
T ss_pred ecccceeEEeccCCceEEEEEeccceeeeeeccCCce
Confidence 7777889999999999999999998877766555444
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=247.95 Aligned_cols=273 Identities=17% Similarity=0.410 Sum_probs=233.8
Q ss_pred ccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 17 YYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
-.+.|+.+.++.++++..|++|+|||.++..+. ..+.||++.|.|+.| +.+.+++|+.|.+|++||+++++++..+
T Consensus 198 kgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~--~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 198 KGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECL--KILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred CceEEEEecchhhhcccccCceEEeccccHHHH--HhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHH
Confidence 346789999999999999999999999887764 456799999999999 5669999999999999999999999999
Q ss_pred cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe--eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN--VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
-.|...|..+.| ++.++++++.|.++.+||+..... +...+.+|...|+.+.|+. +++++++.|.+|++|++.
T Consensus 274 ihHceaVLhlrf---~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~s 348 (499)
T KOG0281|consen 274 IHHCEAVLHLRF---SNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTS 348 (499)
T ss_pred hhhcceeEEEEE---eCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEecc
Confidence 999999999999 568999999999999999976543 3456789999999999864 599999999999999977
Q ss_pred CCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC-cEeEEEeCCCCceeeeeee
Q 019847 175 KMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA-QICGLEWNRHHKEILSGHG 253 (335)
Q Consensus 175 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 253 (335)
+ ...+.++.+|...|-|+.+. ..++++|+ .|.+|++||++.|.+++.++++. -+.++.|. .+.+++|
T Consensus 349 t---~efvRtl~gHkRGIAClQYr---~rlvVSGS--SDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSG-- 416 (499)
T KOG0281|consen 349 T---CEFVRTLNGHKRGIACLQYR---DRLVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSG-- 416 (499)
T ss_pred c---eeeehhhhcccccceehhcc---CeEEEecC--CCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeec--
Confidence 6 45688889999999888764 36888876 99999999999999999998865 57888884 5667777
Q ss_pred eeeecCCCeEEEEECCCCce---------eecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 019847 254 FSASGDGNKLCLWKYPNMTK---------VGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 254 ~~~~~~~~~i~i~d~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
+-||.|++||+..+.. +.++..|.+.|..+.| |...+++++.|.+|.|||+.++...
T Consensus 417 ----aYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 417 ----AYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ----cccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 5699999999987543 3445678999999999 4558999999999999999887554
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=234.82 Aligned_cols=285 Identities=18% Similarity=0.294 Sum_probs=253.1
Q ss_pred cccccceeeeecC----C-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC
Q 019847 14 MEDYYSKVIDWGR----N-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE 88 (335)
Q Consensus 14 ~~~~~~~~~~~~~----~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 88 (335)
.+..++.-++|++ + .+++++.|+.-.+-+-++|..+ -++.+|.+.|....++.+....|+++.|-+-++||.-
T Consensus 12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi--gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~ 89 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI--GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAV 89 (334)
T ss_pred CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE--EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhh
Confidence 3456677788876 2 3667788999999998899874 4567999999999999999899999999999999999
Q ss_pred CceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeE
Q 019847 89 TSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVV 168 (335)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (335)
+|..+..+. |..-|.+++|+. +.+.|++|+.+..+++||++..+.....+.+|.+.|..+.|....+.+++++.|++|
T Consensus 90 tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tV 167 (334)
T KOG0278|consen 90 TGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTV 167 (334)
T ss_pred hhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCce
Confidence 999999987 889999999999 999999999999999999998887788889999999999999988999999999999
Q ss_pred EEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCcee
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEI 248 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (335)
|+||.+++.. ++.+. .+.+|+++..+++|. +++++ ..+.|.+||..+...++.++.+..|.+...+|+...+
T Consensus 168 RLWD~rTgt~---v~sL~-~~s~VtSlEvs~dG~-ilTia---~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~f 239 (334)
T KOG0278|consen 168 RLWDHRTGTE---VQSLE-FNSPVTSLEVSQDGR-ILTIA---YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFF 239 (334)
T ss_pred EEEEeccCcE---EEEEe-cCCCCcceeeccCCC-EEEEe---cCceeEEeccccccceeeccCccccccccccCCCceE
Confidence 9999998654 44433 467899999999996 55555 5789999999999999999999999999999999888
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceeecc-cCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVGEL-QSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
++| ++|..++.||+.+++.+..+ ++|.++|.++.|+|+|...++|++||+|++|.....+..
T Consensus 240 VaG------ged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 240 VAG------GEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred Eec------CcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 877 89999999999999999886 899999999999999999999999999999998876654
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=253.94 Aligned_cols=280 Identities=21% Similarity=0.367 Sum_probs=236.2
Q ss_pred ccccceeeeecCC---ceEEEecCCeEEEEEecC-CceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc
Q 019847 15 EDYYSKVIDWGRN---NVLAVALGPVLFLWKWEN-GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 15 ~~~~~~~~~~~~~---~~~~~~~~~~i~vw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
+.--++++.|-+. .+++++.|+.|+||++-. ++ .+.++.+|..+|..++|+++|..+++++.|+.|++||+++|
T Consensus 213 H~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~--~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG 290 (503)
T KOG0282|consen 213 HTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR--CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG 290 (503)
T ss_pred CccccchhhhccceeeEEEecCCCceEEEEEEecCcc--eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccc
Confidence 4456778888872 466778999999999876 44 45677899999999999999999999999999999999999
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
+++..+. ....++++.|.|.+.+.|++|+.|+.|+.||+++++ +++.+..|-+.|..+.|-++++.+++.+.|++++|
T Consensus 291 ~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~ri 368 (503)
T KOG0282|consen 291 QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRI 368 (503)
T ss_pred eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhheeeeEEccCCceEeeeccCccEEE
Confidence 9999987 567899999999666999999999999999999766 57777889999999999999999999999999999
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceE---EEee---cCCcEeEEEeCCC
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI---HGID---AKAQICGLEWNRH 244 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~---~~~~---~~~~~~~~~~~~~ 244 (335)
|+.+.+...+.+.....| ...++..+|+++.+++- + .|+.|.++.+...-.+ ..++ ..+-...+.|||+
T Consensus 369 We~~~~v~ik~i~~~~~h--smP~~~~~P~~~~~~aQ-s--~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 369 WENRIPVPIKNIADPEMH--TMPCLTLHPNGKWFAAQ-S--MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred EEcCCCccchhhcchhhc--cCcceecCCCCCeehhh-c--cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 998876554444443333 46689999999755553 3 8999999986543221 2222 2456788999999
Q ss_pred CceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCC-CEEEEEeCCCcEEEEe
Q 019847 245 HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDG-LTVATAGADETIRFWE 309 (335)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iw~ 309 (335)
|.+|++| ..+|.+.+||.++-+.+..+++|.+++..+.|+|.. ..+|+++.||.|++|+
T Consensus 444 G~~l~SG------dsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 444 GRTLCSG------DSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCeEEee------cCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999998 679999999999999999999999999999999964 6799999999999996
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=255.79 Aligned_cols=261 Identities=16% Similarity=0.294 Sum_probs=237.5
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccC
Q 019847 54 VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVS 133 (335)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 133 (335)
+..+...|.++.|+|....++++-.+|.|.|||.++...++.+.....+|++..|.+ ..+.+++|+.|..|++|+.++.
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEecccc
Confidence 445789999999999999999999999999999999999999999999999999999 9999999999999999999988
Q ss_pred CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC
Q 019847 134 NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213 (335)
Q Consensus 134 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 213 (335)
++ +..+..|...|++++.+|...++++++.|-.|++||.+.. ..+.+++.+|...|.+++|+|....-+++++ .|
T Consensus 88 ek-V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~--wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s--LD 162 (794)
T KOG0276|consen 88 EK-VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE--WACEQTFEGHEHYVMQVAFNPKDPNTFASAS--LD 162 (794)
T ss_pred ee-eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc--eeeeeEEcCcceEEEEEEecCCCccceeeee--cc
Confidence 76 6668999999999999999999999999999999998763 6788999999999999999999999999988 99
Q ss_pred CeEEEEECCCCceEEEeecC-CcEeEEEeCCCC--ceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEc
Q 019847 214 GCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHH--KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQS 290 (335)
Q Consensus 214 ~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 290 (335)
++|++|.+.+..+..+++.+ ..++++.+-+.| .++++| ++|..++|||..+.++++++.+|...|..+.|+
T Consensus 163 rTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg------aDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fh 236 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG------ADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFH 236 (794)
T ss_pred ccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEec------CCCceEEEeecchHHHHHHhhcccccceEEEec
Confidence 99999999999999999875 479999998876 577777 889999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCCCcccccccc
Q 019847 291 PDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGL 326 (335)
Q Consensus 291 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i 326 (335)
|.-.++++|++||+++||+..+-+.+..+.-....+
T Consensus 237 p~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRv 272 (794)
T KOG0276|consen 237 PELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERV 272 (794)
T ss_pred CCCcEEEEecCCccEEEecCcceehhhhhhcCCceE
Confidence 999999999999999999988766655443333333
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=241.02 Aligned_cols=308 Identities=18% Similarity=0.294 Sum_probs=248.7
Q ss_pred CcccccceeeeecCCceEEEe--cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC--CCcEEEEeCC
Q 019847 13 LMEDYYSKVIDWGRNNVLAVA--LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM--DSKLQLWDAE 88 (335)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~--~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~ 88 (335)
.-+...++...++|..+..++ ..|+|+|||....+.....+++.-.++|..++|++++++|++.+. +.-.+++-.+
T Consensus 56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D 135 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD 135 (603)
T ss_pred ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec
Confidence 345666777888987555555 458999999876555555566667889999999999999988763 2233344444
Q ss_pred CceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeE
Q 019847 89 TSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVV 168 (335)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (335)
+|..+.++.+|...|.++.|-|..+-.+++|+.|+.|.+|+=. .-+.......|..-|.++.|+|||.++|+++.||++
T Consensus 136 SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGP-PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki 214 (603)
T KOG0318|consen 136 SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGP-PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKI 214 (603)
T ss_pred CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCC-CeeeeecccccccceeeEEECCCCCeEEEecCCccE
Confidence 7888999999999999999999888999999999999999855 344566778899999999999999999999999999
Q ss_pred EEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCc----EeEEEeCCC
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ----ICGLEWNRH 244 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~ 244 (335)
.+||-.+++....+..-.+|.+.|.+++|+||+..+++++ .|.+++|||+.+.++++++..... ...+.|.
T Consensus 215 ~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S---aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-- 289 (603)
T KOG0318|consen 215 YIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS---ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-- 289 (603)
T ss_pred EEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec---CCceEEEEEeeccceEEEeecCCchhceEEEEEEe--
Confidence 9999665544333333448999999999999998888776 599999999999999999976543 4455565
Q ss_pred CceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC-ccccc
Q 019847 245 HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED-SVSHL 323 (335)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~ 323 (335)
...+++- +.+|.|.+++.....++..+.+|...|++++.+||+.+|++|+.||.|.-|+...+..... ...|.
T Consensus 290 kd~lItV------Sl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~ 363 (603)
T KOG0318|consen 290 KDHLITV------SLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHT 363 (603)
T ss_pred CCeEEEE------EcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccccccc
Confidence 3334443 5599999999999999999999999999999999999999999999999999998765543 25677
Q ss_pred cccccceec
Q 019847 324 AGLVSLKTS 332 (335)
Q Consensus 324 ~~i~~~~~~ 332 (335)
..|.++...
T Consensus 364 nqI~~~~~~ 372 (603)
T KOG0318|consen 364 NQIKGMAAS 372 (603)
T ss_pred ceEEEEeec
Confidence 777666543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=252.25 Aligned_cols=278 Identities=16% Similarity=0.273 Sum_probs=248.9
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
..-.+.+++++|. -++++-.+|.|.|||.++..+.+.+.. ..-+|++..|-+..+.+++|+.|..|+||+.++++.
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV--~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek 89 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV--SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK 89 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee--cccchhhheeeeccceEEEecCCceEEEEeccccee
Confidence 4556889999994 467777999999999999988776654 467899999999999999999999999999999999
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIW 171 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iw 171 (335)
+..|..|.+-|++++.+| ...++++++.|-.|++||.+..-.+.+.+.+|...|.+++|+| |.+.+|+++-|++|++|
T Consensus 90 V~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW 168 (794)
T KOG0276|consen 90 VKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVW 168 (794)
T ss_pred eEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEE
Confidence 999999999999999999 8899999999999999999988888999999999999999999 77899999999999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCC-cEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQV-NVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEIL 249 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 249 (335)
.+.. ..+..++.+|...|+|+.+-+.|. -.+.+|+ .|..+++||.++..+++++++| ..+..+.|+|.-..++
T Consensus 169 slgs---~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga--DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiii 243 (794)
T KOG0276|consen 169 SLGS---PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA--DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIII 243 (794)
T ss_pred EcCC---CCCceeeeccccCcceEEeccCCCcceEEecC--CCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEE
Confidence 9776 455778889999999999987653 2444544 8999999999999999999965 5799999999999999
Q ss_pred eeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEE
Q 019847 250 SGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIR 306 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 306 (335)
+| ++||+++||+..+.++..++.-..+++.+++-.+.++.++.|..+|.|.
T Consensus 244 sg------sEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 244 SG------SEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred Ee------cCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 88 8999999999999999988888888999999999888888888777764
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=256.70 Aligned_cols=281 Identities=22% Similarity=0.361 Sum_probs=243.1
Q ss_pred cceeeeecC---CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc----
Q 019847 18 YSKVIDWGR---NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS---- 90 (335)
Q Consensus 18 ~~~~~~~~~---~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---- 90 (335)
.+..++|-+ +.+++++..+.+++|+..+..+. -+++|++.|.++....+|.+|++|+.|.++++|.++++
T Consensus 325 EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~ 401 (775)
T KOG0319|consen 325 EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS 401 (775)
T ss_pred hheeeeecCCccceEEEEeCCCceEEEecCCCceE---EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchh
Confidence 344455544 56777888999999998887754 56799999999996678889999999999999987443
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe----ee----EEeecCCCCEEEEEeecCCCEEEEE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN----VT----SCIKAHSGEVCGLKWSNEGNLLASG 162 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~----~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (335)
-++....+|...|.+++++.....+|++++.|+++++|++...+. +. .....|...|++++++|+..++|+|
T Consensus 402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~ 481 (775)
T KOG0319|consen 402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATG 481 (775)
T ss_pred hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEec
Confidence 345567789999999999887788999999999999999975221 11 1235699999999999999999999
Q ss_pred eCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEe
Q 019847 163 GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEW 241 (335)
Q Consensus 163 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~ 241 (335)
|.|++.+||++.. ......+.+|...|.++.|+|..+ ++++++ .|++|+||.+.+..++++++++ ..|..+.|
T Consensus 482 SqDktaKiW~le~---~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~S--gD~TvKIW~is~fSClkT~eGH~~aVlra~F 555 (775)
T KOG0319|consen 482 SQDKTAKIWDLEQ---LRLLGVLSGHTRGVWCVSFSKNDQ-LLATCS--GDKTVKIWSISTFSCLKTFEGHTSAVLRASF 555 (775)
T ss_pred ccccceeeecccC---ceEEEEeeCCccceEEEEeccccc-eeEecc--CCceEEEEEeccceeeeeecCccceeEeeee
Confidence 9999999999874 567889999999999999999885 667766 7999999999999999999954 57999999
Q ss_pred CCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 242 NRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
-.+++.++++ +.||-+++|++++.+++.++..|...|.+++.+|...+++||+.||.|.+|.=.+.
T Consensus 556 ~~~~~qliS~------~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 556 IRNGKQLISA------GADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred eeCCcEEEec------cCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9999999988 77999999999999999999999999999999999999999999999999975543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=269.94 Aligned_cols=281 Identities=17% Similarity=0.282 Sum_probs=225.7
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCc----e--eeEEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEE
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGK----V--KKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLW 85 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~----~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw 85 (335)
+...+.+++|+++ .+++++.|+.|+||+.+... . .+...+. +...+.+++|+| ++.+|++++.||.|++|
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 4667889999974 46678899999999975421 1 1122333 346789999987 57899999999999999
Q ss_pred eCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeC
Q 019847 86 DAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGD 164 (335)
Q Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 164 (335)
|+.+++.+..+.+|...|++++|+|.++.+|++|+.||.|++||++++.. ...+. +...+.++.|++ ++.+|++|+.
T Consensus 561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~-~~~~v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 561 DVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIK-TKANICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred ECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEe-cCCCeEEEEEeCCCCCEEEEEeC
Confidence 99999999999999999999999986789999999999999999987655 34444 346799999954 7999999999
Q ss_pred CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC------ceEEEeecC-CcEe
Q 019847 165 DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG------TCIHGIDAK-AQIC 237 (335)
Q Consensus 165 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~------~~~~~~~~~-~~~~ 237 (335)
||.|++||++... ..+..+.+|...|.++.|. ++. .+++++ .|+.|++||++.+ .++..+..+ ..+.
T Consensus 639 dg~I~iwD~~~~~--~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s--~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~ 712 (793)
T PLN00181 639 DHKVYYYDLRNPK--LPLCTMIGHSKTVSYVRFV-DSS-TLVSSS--TDNTLKLWDLSMSISGINETPLHSFMGHTNVKN 712 (793)
T ss_pred CCeEEEEECCCCC--ccceEecCCCCCEEEEEEe-CCC-EEEEEE--CCCEEEEEeCCCCccccCCcceEEEcCCCCCee
Confidence 9999999988642 2355667899999999997 444 455554 7999999999753 456666654 4678
Q ss_pred EEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeec-------------ccCCCCceeEeEEcCCCCEEEEEeCCCc
Q 019847 238 GLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE-------------LQSSNSRILDLSQSPDGLTVATAGADET 304 (335)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 304 (335)
.+.|+|++.++++| +.|+.+++|+.....++.. ...|...|.+++|+|++..|++|+.||.
T Consensus 713 ~v~~s~~~~~lasg------s~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~ 786 (793)
T PLN00181 713 FVGLSVSDGYIATG------SETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGN 786 (793)
T ss_pred EEEEcCCCCEEEEE------eCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCc
Confidence 99999999999888 7899999999876544322 1234567999999999999999999999
Q ss_pred EEEEec
Q 019847 305 IRFWEA 310 (335)
Q Consensus 305 v~iw~~ 310 (335)
|++|++
T Consensus 787 I~i~~~ 792 (793)
T PLN00181 787 IKILEM 792 (793)
T ss_pred EEEEec
Confidence 999986
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-39 Score=243.18 Aligned_cols=256 Identities=17% Similarity=0.361 Sum_probs=222.5
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV 136 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 136 (335)
....|+|+.+ |...+++|..|.+|+|||.++..+++.+.+|.+.|.|+.| +.+.+++|+.|.+|++||.++++.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy---d~rviisGSSDsTvrvWDv~tge~- 269 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY---DERVIVSGSSDSTVRVWDVNTGEP- 269 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec---cceEEEecCCCceEEEEeccCCch-
Confidence 3567999998 6667999999999999999999999999999999999999 667999999999999999997776
Q ss_pred eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeE
Q 019847 137 TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCI 216 (335)
Q Consensus 137 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 216 (335)
...+..|...|..+.|+. .++++++.|.++.+||+..+......+.+.+|...|+.+.|+.. ++++++ .|.+|
T Consensus 270 l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---yIVsAS--gDRTi 342 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSAS--GDRTI 342 (499)
T ss_pred hhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc---eEEEec--CCceE
Confidence 566778999999999985 49999999999999999988776777888999999999999753 555555 69999
Q ss_pred EEEECCCCceEEEeecCC-cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCE
Q 019847 217 KIWNVQKGTCIHGIDAKA-QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLT 295 (335)
Q Consensus 217 ~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 295 (335)
++|++.+++.++++.++. .|.|+.+ .++++++| +.|++|++||+..|.++..+++|+.-|.++.| |.+.
T Consensus 343 kvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSG------SSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~kr 412 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSG------SSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKR 412 (499)
T ss_pred EEEeccceeeehhhhcccccceehhc--cCeEEEec------CCCceEEEEeccccHHHHHHhchHHhhhheee--cCce
Confidence 999999999999998754 5766664 57777777 78999999999999999999999999999999 4558
Q ss_pred EEEEeCCCcEEEEecCCCCCC---------CCccccccccccceecccC
Q 019847 296 VATAGADETIRFWEAFGPSGD---------EDSVSHLAGLVSLKTSVIR 335 (335)
Q Consensus 296 l~~~~~dg~v~iw~~~~~~~~---------~~~~~~~~~i~~~~~~~~~ 335 (335)
+++|+.||+|++||+..+... .....|.+.|..+.|..+|
T Consensus 413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fq 461 (499)
T KOG0281|consen 413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQ 461 (499)
T ss_pred eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceE
Confidence 999999999999999886554 2346788888888887765
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=238.71 Aligned_cols=277 Identities=18% Similarity=0.284 Sum_probs=226.3
Q ss_pred eeeecC--CceEEEecCCeEEEEEecCC-ceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec
Q 019847 21 VIDWGR--NNVLAVALGPVLFLWKWENG-KVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97 (335)
Q Consensus 21 ~~~~~~--~~~~~~~~~~~i~vw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 97 (335)
.+.|++ .++++++.|.+..+|.+... +..-..++.+|..+|..+.||||.++|++++.+..+.+||+.+|.....+.
T Consensus 229 fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~ 308 (519)
T KOG0293|consen 229 FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP 308 (519)
T ss_pred EEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc
Confidence 355555 46777889999999997643 344456778999999999999999999999999999999999999887775
Q ss_pred c-cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC-CCCEEEEEeecCCCEEEEEeCCCeEEEEEccC
Q 019847 98 G-HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH-SGEVCGLKWSNEGNLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 98 ~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 175 (335)
. +...+.+++|.| ++..+++|+.|+.+..||++... .....+. ...|.+++..+||+++++...|..|++++.+.
T Consensus 309 ~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 309 SGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREA 385 (519)
T ss_pred cCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhh
Confidence 3 457899999999 99999999999999999997332 3333332 35699999999999999999999999999775
Q ss_pred CCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC---cEeEEEeCCCC-ceeeee
Q 019847 176 MSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA---QICGLEWNRHH-KEILSG 251 (335)
Q Consensus 176 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~ 251 (335)
..... +.....+|++++.+.++++.++.- .+..+++||++..+.+..+.++. -+..-+|-... .++++|
T Consensus 386 ~~dr~----lise~~~its~~iS~d~k~~LvnL---~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSG 458 (519)
T KOG0293|consen 386 RVDRG----LISEEQPITSFSISKDGKLALVNL---QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASG 458 (519)
T ss_pred hhhhc----cccccCceeEEEEcCCCcEEEEEc---ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEec
Confidence 33222 223557899999999998777765 69999999999888777776543 24444554443 566666
Q ss_pred eeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCC-CEEEEEeCCCcEEEEecCCC
Q 019847 252 HGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDG-LTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 252 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~ 313 (335)
++|+.|+||+..+++++..+.+|...|++++|+|.. .++|+||.||+||||.....
T Consensus 459 ------SED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 459 ------SEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ------CCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 899999999999999999999999999999999954 68899999999999988765
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=221.76 Aligned_cols=277 Identities=21% Similarity=0.374 Sum_probs=227.1
Q ss_pred eeecC---CceEEEe-------cCCeEEEEEecCC-ceeeEEeecCCCCCceEEEEcCC-CCEEEEEECCCcEEEEeCCC
Q 019847 22 IDWGR---NNVLAVA-------LGPVLFLWKWENG-KVKKLLQVPGEDDYPTSVSWSHD-AKTLAVGYMDSKLQLWDAET 89 (335)
Q Consensus 22 ~~~~~---~~~~~~~-------~~~~i~vw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~ 89 (335)
+.|+| +++++++ ..|.+.|.++..+ .+.....+ .-.+.+..++|+++ .+.+++++.||++++||+..
T Consensus 14 vqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~ 92 (311)
T KOG0277|consen 14 VQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM 92 (311)
T ss_pred eEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEeccCC
Confidence 45555 5655553 4689999999643 33333333 34678999999995 56788899999999999653
Q ss_pred -ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCe
Q 019847 90 -SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNV 167 (335)
Q Consensus 90 -~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~ 167 (335)
..++..++.|...|.++.|++.....+++++.|++|++|+...++. ++++.+|...|....|+| .++++++++.|+.
T Consensus 93 ~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S-v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 93 PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS-VQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc-eEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 4678899999999999999998899999999999999999985554 667899999999999999 7889999999999
Q ss_pred EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc-eEEEeecCC-cEeEEEeCCCC
Q 019847 168 VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT-CIHGIDAKA-QICGLEWNRHH 245 (335)
Q Consensus 168 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~-~~~~~~~~~~~ 245 (335)
+++||++.+. +.+. +..|..++.++.|+..+++++++++ .|+.|+.||+++-+ ++..+..++ .|..+.|||..
T Consensus 172 l~lwdvr~~g--k~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~--vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~ 246 (311)
T KOG0277|consen 172 LRLWDVRSPG--KFMS-IEAHNSEILCCDWSKYNHNVLATGG--VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHH 246 (311)
T ss_pred EEEEEecCCC--ceeE-EEeccceeEeecccccCCcEEEecC--CCceEEEEehhhccccceeecCCceEEEEEecCcch
Confidence 9999998763 3333 7789999999999999999999987 99999999999754 455665544 79999999998
Q ss_pred ceeeeeeeeeeecCCCeEEEEECCC-CceeecccCCCCceeEeEEcC-CCCEEEEEeCCCcEEEEec
Q 019847 246 KEILSGHGFSASGDGNKLCLWKYPN-MTKVGELQSSNSRILDLSQSP-DGLTVATAGADETIRFWEA 310 (335)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iw~~ 310 (335)
..+++. ++-|-+++|||... ...+.+...|++-+..+.|++ ++.++|+.+.|+.++||+.
T Consensus 247 ~~lLaS-----asYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 247 ASLLAS-----ASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhHhhh-----ccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 766443 36699999999874 445666778888899999998 4678999999999999984
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=241.48 Aligned_cols=266 Identities=27% Similarity=0.509 Sum_probs=230.4
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEeccc
Q 019847 53 QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV 132 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 132 (335)
.+.+|..+|++++|+|++++|++++.||.+++|++.+++....+..|...+..+.|+| +++.+++++.+|.+++||+..
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCc
Confidence 3458999999999999999999999999999999999888888888999999999999 788999999999999999986
Q ss_pred CCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCC
Q 019847 133 SNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE 212 (335)
Q Consensus 133 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 212 (335)
.+. ...+..|...+.++.|+|+++++++++.||.+++||+++. +....+..|...+.++.|+|++. ++++++ .
T Consensus 83 ~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~ 155 (289)
T cd00200 83 GEC-VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG---KCLTTLRGHTDWVNSVAFSPDGT-FVASSS--Q 155 (289)
T ss_pred ccc-eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc---EEEEEeccCCCcEEEEEEcCcCC-EEEEEc--C
Confidence 543 5556788889999999999888988888999999998753 44566667888999999999964 555553 6
Q ss_pred CCeEEEEECCCCceEEEeecCC-cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcC
Q 019847 213 DGCIKIWNVQKGTCIHGIDAKA-QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSP 291 (335)
Q Consensus 213 d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 291 (335)
|+.+++||+++++.+..+..+. .+.++.|+|+++.++++ +.++.+++||+..++.+..+..|...+.++.|+|
T Consensus 156 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 229 (289)
T cd00200 156 DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSS------SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP 229 (289)
T ss_pred CCcEEEEEccccccceeEecCccccceEEECCCcCEEEEe------cCCCcEEEEECCCCceecchhhcCCceEEEEEcC
Confidence 9999999999888888877654 89999999999888776 5599999999999999999988998999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 292 DGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 292 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
++.++++++.||.|++|++...........|...+.++.++
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~ 270 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS 270 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEEC
Confidence 99899888889999999999876666666777777776654
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=249.50 Aligned_cols=296 Identities=20% Similarity=0.322 Sum_probs=255.6
Q ss_pred ecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEE-cCCCCEEEEEECCCcEEEEeCCCceeEeeecccccc
Q 019847 24 WGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSW-SHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRR 102 (335)
Q Consensus 24 ~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 102 (335)
.+.+.+++++.+.++.++|.++.++.+ .+-|..+.|.+++| .|+.++||+++..+.+++|++.+..+. .+.+|...
T Consensus 291 ~~~~~~l~vtaeQnl~l~d~~~l~i~k--~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~ 367 (775)
T KOG0319|consen 291 ESMSQLLLVTAEQNLFLYDEDELTIVK--QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEA 367 (775)
T ss_pred cccCceEEEEccceEEEEEccccEEeh--hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhh
Confidence 344689999999999999988887644 44577888999987 467889999999999999998887765 78899999
Q ss_pred eeEeeecCCCCCEEEEeeCCCcEEEEecccCCe---eeEEeecCCCCEEEEEeecC-CCEEEEEeCCCeEEEEEccCCCc
Q 019847 103 VATSSWNHWNGHILTSGSKDKSIINHDVRVSNN---VTSCIKAHSGEVCGLKWSNE-GNLLASGGDDNVVRIWERSKMSS 178 (335)
Q Consensus 103 v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~ 178 (335)
|.++.... ++.+|++|+.|.++++|.++++.. +.....+|...|.+++++.. ..+|++++.|+++++|++.....
T Consensus 368 vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~ 446 (775)
T KOG0319|consen 368 VLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE 446 (775)
T ss_pred eeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccc
Confidence 99999444 678999999999999998853332 34456789999999999773 46899999999999999886222
Q ss_pred ccc--e----eeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC-cEeEEEeCCCCceeeee
Q 019847 179 SKS--L----HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA-QICGLEWNRHHKEILSG 251 (335)
Q Consensus 179 ~~~--~----~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 251 (335)
... . .....|...|++++.+|+. .++++|+ .|.+.++|+++..+.+..+.+|. .+.++.|+|..+.++++
T Consensus 447 ~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~S--qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~ 523 (775)
T KOG0319|consen 447 TAFPIVLTCRYTERAHDKDINCVAIAPND-KLIATGS--QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATC 523 (775)
T ss_pred ccccceehhhHHHHhhcccccceEecCCC-ceEEecc--cccceeeecccCceEEEEeeCCccceEEEEeccccceeEec
Confidence 111 1 2345699999999999998 5888887 99999999999999999998765 79999999999999988
Q ss_pred eeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcccccccccccee
Q 019847 252 HGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 252 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~ 331 (335)
+.|.+|+||.+.++.+++++.+|...|..+.|-.+|..|++++.||.+++|++.+......+-.|.+.|.++..
T Consensus 524 ------SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~ 597 (775)
T KOG0319|consen 524 ------SGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSV 597 (775)
T ss_pred ------cCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEee
Confidence 77999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred c
Q 019847 332 S 332 (335)
Q Consensus 332 ~ 332 (335)
+
T Consensus 598 ~ 598 (775)
T KOG0319|consen 598 S 598 (775)
T ss_pred c
Confidence 4
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=230.85 Aligned_cols=272 Identities=19% Similarity=0.307 Sum_probs=227.9
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEec
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 130 (335)
...+..|+..|.+++.+|+.+++++|+.|..-.+|++.+++....+.+|+..|+++.|+. ++.+|++|+.+|.|++|..
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEc
Confidence 456778999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC
Q 019847 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210 (335)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 210 (335)
.++..... +...-..+.-+.|+|.+..|++|+.||.+.+|.+.+. ...+.+.+|+.++++-.|.|+|++++...
T Consensus 136 stg~~~~~-~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~---~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy-- 209 (399)
T KOG0296|consen 136 STGGEQWK-LDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ---ALCKVMSGHNSPCTCGEFIPDGKRILTGY-- 209 (399)
T ss_pred ccCceEEE-eecccCceEEEEecccccEEEeecCCCcEEEEECCCc---ceeeEecCCCCCcccccccCCCceEEEEe--
Confidence 98776444 3345567888999999999999999999999998763 56788889999999999999998776644
Q ss_pred CCCCeEEEEECCCCceEEEeec--CCcEeEEEeCCCCceeeeee------------------------------------
Q 019847 211 REDGCIKIWNVQKGTCIHGIDA--KAQICGLEWNRHHKEILSGH------------------------------------ 252 (335)
Q Consensus 211 ~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------------------------------------ 252 (335)
.||+|++||+.+++++..+.. +.+..++.++..+..++.|.
T Consensus 210 -~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 210 -DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred -cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 799999999999999887762 12233333333322222220
Q ss_pred -----------eeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccc
Q 019847 253 -----------GFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVS 321 (335)
Q Consensus 253 -----------~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 321 (335)
.+++++-||+|.|||+...++...+ .|..+|+.+.|-+ ..+|++++.||.|+.||.+.++....+.+
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec
Confidence 1445688999999999887776555 5777899999999 67999999999999999999999999999
Q ss_pred cccccccceec
Q 019847 322 HLAGLVSLKTS 332 (335)
Q Consensus 322 ~~~~i~~~~~~ 332 (335)
|...|..+..+
T Consensus 367 H~~~Il~f~ls 377 (399)
T KOG0296|consen 367 HQMGILDFALS 377 (399)
T ss_pred CchheeEEEEc
Confidence 99999876543
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=250.59 Aligned_cols=290 Identities=20% Similarity=0.323 Sum_probs=249.0
Q ss_pred ccccCCCCcccccceeeeecCCceEE-EecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEE
Q 019847 6 RILDAPYLMEDYYSKVIDWGRNNVLA-VALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQL 84 (335)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (335)
++-......+...+.+++++.+.++. .+.++.+++|+.++.++...+. ...+.+..|.|.++++++|...|.+.+
T Consensus 363 ~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~----~~y~l~~~Fvpgd~~Iv~G~k~Gel~v 438 (888)
T KOG0306|consen 363 RTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT----CGYILASKFVPGDRYIVLGTKNGELQV 438 (888)
T ss_pred ccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEec----cccEEEEEecCCCceEEEeccCCceEE
Confidence 33334445566778899999876555 4568899999999998766554 347899999999999999999999999
Q ss_pred EeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe-------ee----EEeecCCCCEEEEEee
Q 019847 85 WDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN-------VT----SCIKAHSGEVCGLKWS 153 (335)
Q Consensus 85 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-------~~----~~~~~~~~~i~~~~~~ 153 (335)
||+.....+..++.|.+.|++++.+| ++..+++|+.|.+|++||..-... .. ......+..|.|+.+|
T Consensus 439 fdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S 517 (888)
T KOG0306|consen 439 FDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS 517 (888)
T ss_pred EEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence 99999999999999999999999999 999999999999999999752111 11 0122346789999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee-c
Q 019847 154 NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID-A 232 (335)
Q Consensus 154 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~ 232 (335)
||+++||++--|.++++|-+++ .+....+.+|.-||.|+..+||++ ++++|+ .|.+|++|-+.-|.+-+.+- +
T Consensus 518 pdgk~LaVsLLdnTVkVyflDt---lKFflsLYGHkLPV~smDIS~DSk-livTgS--ADKnVKiWGLdFGDCHKS~fAH 591 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLDT---LKFFLSLYGHKLPVLSMDISPDSK-LIVTGS--ADKNVKIWGLDFGDCHKSFFAH 591 (888)
T ss_pred CCCcEEEEEeccCeEEEEEecc---eeeeeeecccccceeEEeccCCcC-eEEecc--CCCceEEeccccchhhhhhhcc
Confidence 9999999999999999999877 455777889999999999999995 666666 89999999999999987765 4
Q ss_pred CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 233 KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
...|.++.|-|....+.++ +.|+.|+-||-...+.++.+.+|...|.+++.+|+|.++++++.|..|++|....
T Consensus 592 dDSvm~V~F~P~~~~FFt~------gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 592 DDSVMSVQFLPKTHLFFTC------GKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cCceeEEEEcccceeEEEe------cCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 5689999999988877766 8899999999999999999999999999999999999999999999999998776
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=227.53 Aligned_cols=269 Identities=21% Similarity=0.340 Sum_probs=228.1
Q ss_pred eeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC-CceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEE
Q 019847 49 KKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE-TSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIIN 127 (335)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 127 (335)
.+...+++|++.|+.+.|+|+|.+||+|+.|..|.+|++. ..+....+++|.+.|..+.|.+ +++.+++++.|.+++.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRG 116 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEE
Confidence 3455668999999999999999999999999999999954 4456677889999999999999 9999999999999999
Q ss_pred EecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEE
Q 019847 128 HDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLA 206 (335)
Q Consensus 128 ~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 206 (335)
||.++++. ....++|..-|+++.-+. ...++.+++.||++++||+|+.. .++++. .+.+++++.|...+...+.
T Consensus 117 wD~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~---~~~t~~-~kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 117 WDAETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE---AIKTFE-NKYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred Eeccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc---hhhccc-cceeEEEEEecccccceee
Confidence 99998876 555788999999988444 34577888999999999998743 344443 4567999999999987776
Q ss_pred EecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc----eeecccCCC
Q 019847 207 TGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT----KVGELQSSN 281 (335)
Q Consensus 207 ~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~----~~~~~~~~~ 281 (335)
.+ .|+.|++||++.+.....+.++ .+|+.+..+|+|.++.+- +.|..+++||++... ++..+.+|.
T Consensus 192 gg---Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsn------sMd~tvrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 192 GG---IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSN------SMDNTVRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred cc---ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccc------cccceEEEEEecccCCCCceEEEeecch
Confidence 54 8999999999999999999875 589999999999999876 679999999997643 355566553
Q ss_pred C----ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 282 S----RILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 282 ~----~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
. .....+|+|++..+.+|+.|..+++||........+..+|...|..+.|-
T Consensus 263 hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fh 317 (338)
T KOG0265|consen 263 HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFH 317 (338)
T ss_pred hhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeec
Confidence 3 34567899999999999999999999999999999999999999888774
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=215.73 Aligned_cols=276 Identities=20% Similarity=0.306 Sum_probs=234.9
Q ss_pred ccccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
.+..+.++.++. ++.++++.|.+|++|+...+.+++ ++.+|...|..++.+.|...+++|+.|..+.+||+++|+.
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik--tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv 93 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK--TYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKV 93 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeecccccceee--eecCCCceeeeccccccccccccCCCCceEEEEEcccCee
Confidence 456788888886 578889999999999999998755 5568999999999999999999999999999999999999
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC-eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN-NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
.+.+.+|...|+.++|+. +...+++|+.|.++++||.+... ++++.+......|.++..+ +..+++|+.||+++.|
T Consensus 94 ~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRty 170 (307)
T KOG0316|consen 94 DRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTY 170 (307)
T ss_pred eeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEE
Confidence 999999999999999998 99999999999999999998643 4577777888899999876 5689999999999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC---cEeEEEeCCCCcee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA---QICGLEWNRHHKEI 248 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 248 (335)
|++.+. ..... ...+|++++|++++...++.+ .|+++++.|-.+|+.+..++++. .-...+++.....+
T Consensus 171 diR~G~---l~sDy--~g~pit~vs~s~d~nc~La~~---l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV 242 (307)
T KOG0316|consen 171 DIRKGT---LSSDY--FGHPITSVSFSKDGNCSLASS---LDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHV 242 (307)
T ss_pred Eeecce---eehhh--cCCcceeEEecCCCCEEEEee---ccceeeecccchhHHHHHhcccccceeeeeeeecccceeE
Confidence 999753 23333 346799999999998777755 89999999999999998887654 23456677777777
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceeecccCCCCc-eeEeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSR-ILDLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
++| ++||.+.+||+.....+..+..+... +++++++|.-.-|+++.. +.+.+|.-
T Consensus 243 ~sg------SEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~ 298 (307)
T KOG0316|consen 243 FSG------SEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWYQ 298 (307)
T ss_pred Eec------cCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceeceee
Confidence 777 89999999999999999999988887 899999998777777754 45666643
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=213.35 Aligned_cols=250 Identities=22% Similarity=0.431 Sum_probs=212.7
Q ss_pred eeeEEeecCCCCCceEEEEcCC-CCEEEEEECCCcEEEEeCCCc---eeEeee-cccccceeEeeecCCCCCEEEEeeCC
Q 019847 48 VKKLLQVPGEDDYPTSVSWSHD-AKTLAVGYMDSKLQLWDAETS---KLVRNL-EGHHRRVATSSWNHWNGHILTSGSKD 122 (335)
Q Consensus 48 ~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d 122 (335)
+.....+++|.+.+..++|+|. |..||+++.|..|++|+...+ .+...+ .+|+..|++++|+| .+++|++++.|
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD 82 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFD 82 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeecc
Confidence 3445677899999999999998 889999999999999998843 333333 36899999999999 99999999999
Q ss_pred CcEEEEecccCC-eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCC
Q 019847 123 KSIINHDVRVSN-NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQ 201 (335)
Q Consensus 123 g~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 201 (335)
.++.+|.-..+. +....+.+|+..|.+++|+++|++||+++.|+.|.||.+...........+++|...|..+.|+|..
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 999999865332 4577889999999999999999999999999999999999878888899999999999999999987
Q ss_pred CcEEEEecCCCCCeEEEEECC---CCceEEEeecCC-cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecc
Q 019847 202 VNVLATGGGREDGCIKIWNVQ---KGTCIHGIDAKA-QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL 277 (335)
Q Consensus 202 ~~~~~~~~g~~d~~i~i~d~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 277 (335)
. ++++++ .|++|++|+-. ..+++.++..+. .+.+++|++.|..++++ ++|++++||...+.- -
T Consensus 163 d-lL~S~S--YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~------sdD~tv~Iw~~~~~~----~ 229 (312)
T KOG0645|consen 163 D-LLFSCS--YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSC------SDDGTVSIWRLYTDL----S 229 (312)
T ss_pred c-eeEEec--cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEe------cCCcceEeeeeccCc----c
Confidence 5 666666 89999999876 236778887654 89999999999988887 889999999865211 1
Q ss_pred cCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 278 QSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 278 ~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
..|..++..++|. + ..|++++.|+.|++|.-...
T Consensus 230 ~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~ 263 (312)
T KOG0645|consen 230 GMHSRALYDVPWD-N-GVIASGGGDDAIRLFKESDS 263 (312)
T ss_pred hhcccceEeeeec-c-cceEeccCCCEEEEEEecCC
Confidence 2467789999998 4 48999999999999988754
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=219.76 Aligned_cols=290 Identities=17% Similarity=0.269 Sum_probs=238.2
Q ss_pred ccccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
+..+++-+.++. +.+++++.|....||--.+|+. +-++.+|++.|.|++.+.+.+++++|+.|.++++||+++|+.
T Consensus 9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer--lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~ 86 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER--LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ 86 (327)
T ss_pred CccccceEEecCCCcEEEEecCCCCceEEEecCCce--eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE
Confidence 566778888887 4577888999999999888875 556779999999999999999999999999999999999999
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeC-----CCcEEEEecccC------CeeeEEeecCCCCEEEEEeecCCCEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSK-----DKSIINHDVRVS------NNVTSCIKAHSGEVCGLKWSNEGNLLAS 161 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 161 (335)
+..++ ...+|..+.|++ ++++++.... .+.|.++|++.. +.+...+..+.+.++.+-|.|-+++|++
T Consensus 87 la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~ 164 (327)
T KOG0643|consen 87 LATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA 164 (327)
T ss_pred EEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE
Confidence 99988 678999999999 8888777654 468999999832 2234445667899999999999999999
Q ss_pred EeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEe
Q 019847 162 GGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEW 241 (335)
Q Consensus 162 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 241 (335)
|.+||.|.+||++++. +.+.....|...|+.+.++|+..+++ +++ .|.+-++||.++-+.++++....|+++.++
T Consensus 165 Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~Fi-T~s--~Dttakl~D~~tl~v~Kty~te~PvN~aai 239 (327)
T KOG0643|consen 165 GHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFI-TGS--KDTTAKLVDVRTLEVLKTYTTERPVNTAAI 239 (327)
T ss_pred ecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEE-ecc--cCccceeeeccceeeEEEeeecccccceec
Confidence 9999999999998753 34555567889999999999996554 544 899999999999999999999999999999
Q ss_pred CCCCceeeeeeeeee------ecCC--CeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 242 NRHHKEILSGHGFSA------SGDG--NKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 242 ~~~~~~~~~~~~~~~------~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+|....++.|.+--+ .... -.-++|++-..+.+..+++|-++|++++|+|+|+..++|++||.|++.-++..
T Consensus 240 sP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 240 SPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 999988887632100 0001 11233333334556778899999999999999999999999999999876643
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=232.48 Aligned_cols=280 Identities=18% Similarity=0.340 Sum_probs=244.8
Q ss_pred cccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecC------CCCCceEEEEcCCCCEEEEEECCCcEEEEeC
Q 019847 16 DYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPG------EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDA 87 (335)
Q Consensus 16 ~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 87 (335)
...+.|..|+|+ .+++++.||-|.+||..+|+..+-++++. +..+|.|+.|+.|..++|+|+.||.|++|.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 445677788874 57777899999999999998876655543 6789999999999999999999999999999
Q ss_pred CCceeEeeec-ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC
Q 019847 88 ETSKLVRNLE-GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN 166 (335)
Q Consensus 88 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 166 (335)
++|.+++.|. .|...|+++.|+. ++..+++++.|.++++.-+..++. .+.+++|.+.|+...|.++|+++++++.||
T Consensus 293 ~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 293 ETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred ecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 9999999997 8999999999999 999999999999999999997665 666899999999999999999999999999
Q ss_pred eEEEEEccCCCcccceeecc--CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec----CCcEeEEE
Q 019847 167 VVRIWERSKMSSSKSLHRFT--DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA----KAQICGLE 240 (335)
Q Consensus 167 ~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~ 240 (335)
+|++|+.++.+. +.+++ +...+|+++..-|.++.-++.+. ..+++++.++. |+.++.+.. ++...+..
T Consensus 371 tvkvW~~KtteC---~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN--rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 371 TVKVWHGKTTEC---LSTFKPLGTDYPVNSVILLPKNPEHFIVCN--RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred cEEEecCcchhh---hhhccCCCCcccceeEEEcCCCCceEEEEc--CCCeEEEEecc-ceEEeeeccCCccCCceEEEE
Confidence 999999776443 44443 34567889988888877777776 78999999986 788888764 34677888
Q ss_pred eCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
.+|.|.++.+. ++|+.++.|.+.+++...++..|...+..++-+|..+.||+-++||.+++|.
T Consensus 445 lSpkGewiYci------gED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPKGEWIYCI------GEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCCCcEEEEE------ccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 99999999876 8899999999999999999999999999999999999999999999999995
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=250.60 Aligned_cols=287 Identities=19% Similarity=0.322 Sum_probs=244.3
Q ss_pred CcccccceeeeecCCc--eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc
Q 019847 13 LMEDYYSKVIDWGRNN--VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 13 ~~~~~~~~~~~~~~~~--~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
......+..++|+|.+ ++++-..|.|++||.+-+.++. ++..|.++|+.++|+|++.++++|+.|-.|+||+..+.
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~--rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID--RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh--hhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 3445567789999964 6677789999999999887744 56689999999999999999999999999999999999
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
+++.++.+|-+-|+.+.|++ .-..+++++.|.+|++|+..+.++ +..+.+|...|.|..|+|....++++|-|.+||+
T Consensus 84 rclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~-iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKC-IAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred eehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCce-EEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 99999999999999999999 999999999999999999996654 7779999999999999999999999999999999
Q ss_pred EEccCCCcc--------------------------cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC
Q 019847 171 WERSKMSSS--------------------------KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224 (335)
Q Consensus 171 wd~~~~~~~--------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 224 (335)
||+...... ...+.+.+|...|+-++|+|.-+ ++++|+ .|+.|++|.+...
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~--DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGA--DDRQVKLWRMNET 238 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecC--CcceeeEEEeccc
Confidence 998642211 01245678999999999999886 677766 9999999998654
Q ss_pred ce--EEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeC
Q 019847 225 TC--IHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA 301 (335)
Q Consensus 225 ~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 301 (335)
+. +.+.. +.+++.++-|+|....+++. ++|+.|++||+...+.+++++...++...++.+|..+++++| .
T Consensus 239 KaWEvDtcrgH~nnVssvlfhp~q~lIlSn------sEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-H 311 (1202)
T KOG0292|consen 239 KAWEVDTCRGHYNNVSSVLFHPHQDLILSN------SEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-H 311 (1202)
T ss_pred cceeehhhhcccCCcceEEecCccceeEec------CCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-c
Confidence 32 22333 35689999999999998877 899999999999999999998888889999999999877755 5
Q ss_pred CCcEEEEecCCC
Q 019847 302 DETIRFWEAFGP 313 (335)
Q Consensus 302 dg~v~iw~~~~~ 313 (335)
|+-+.+|.++..
T Consensus 312 DsGm~VFkleRE 323 (1202)
T KOG0292|consen 312 DSGMIVFKLERE 323 (1202)
T ss_pred CCceEEEEEccc
Confidence 666678888744
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=240.33 Aligned_cols=266 Identities=18% Similarity=0.316 Sum_probs=229.0
Q ss_pred EEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCC-ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEE
Q 019847 51 LLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAET-SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINH 128 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~ 128 (335)
...+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|++ .+..|++++.|+.+++|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLW 285 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeee
Confidence 456789999999999999 899999999999999999976 899999999999999999999 99999999999999999
Q ss_pred ecccCCeeeEEeecCCCCEEEEEeecCC-CEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEE
Q 019847 129 DVRVSNNVTSCIKAHSGEVCGLKWSNEG-NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207 (335)
Q Consensus 129 d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 207 (335)
|.+++....+. .....++++.|+|++ +.+++|+.|+.|+.||+|.+ +.++.+..|-+.|..+.|-+++.+++++
T Consensus 286 DtETG~~~~~f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~---kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 286 DTETGQVLSRF--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG---KVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred ccccceEEEEE--ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccch---HHHHHHHhhhhheeeeEEccCCceEeee
Confidence 99988865443 235568999999987 89999999999999999984 4678888899999999999999887776
Q ss_pred ecCCCCCeEEEEECCCCceEEEeec--CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC---ceeecccCCCC
Q 019847 208 GGGREDGCIKIWNVQKGTCIHGIDA--KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM---TKVGELQSSNS 282 (335)
Q Consensus 208 ~~g~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~---~~~~~~~~~~~ 282 (335)
. +|+.+++|+.+....+..+.. .....++..+|+++.++.- +.|+.|.+|.+... .....+++|..
T Consensus 361 S---Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ------s~dN~i~ifs~~~~~r~nkkK~feGh~v 431 (503)
T KOG0282|consen 361 S---DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQ------SMDNYIAIFSTVPPFRLNKKKRFEGHSV 431 (503)
T ss_pred c---cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhh------ccCceEEEEecccccccCHhhhhcceec
Confidence 6 799999999998877665543 3357789999999999876 67999999987543 33445677754
Q ss_pred --ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcccccccccccee
Q 019847 283 --RILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 283 --~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~ 331 (335)
.-..+.|||||++|++|+.||.+.+||..+.+.......|...+.++.+
T Consensus 432 aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~w 482 (503)
T KOG0282|consen 432 AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDW 482 (503)
T ss_pred cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEe
Confidence 4567899999999999999999999999999999988888777666544
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=246.36 Aligned_cols=284 Identities=20% Similarity=0.361 Sum_probs=245.2
Q ss_pred ccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEe
Q 019847 15 EDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR 94 (335)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 94 (335)
++..+.+..|.++.+++++.+++|++|+..++.... ..+.+|.+.|.++++...+.+|++|+.|.++++||..+|++..
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~-~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~ 285 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLIL-TRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH 285 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceEEE-eeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE
Confidence 566778888999999999999999999999887643 2378999999999998878899999999999999999999999
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
.+.+|...+.++.. .+..+++|+.|.+|++|+++++. ....+.+|.++|.++..+ +.++++|+.|++|++||+.
T Consensus 286 ~l~gh~stv~~~~~---~~~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 286 SLQGHTSSVRCLTI---DPFLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EecCCCceEEEEEc---cCceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 99999999999988 66888999999999999999655 466677799999999987 7799999999999999988
Q ss_pred CCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-ceEEEeecCCcEeEEEeCCCCceeeeeee
Q 019847 175 KMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-TCIHGIDAKAQICGLEWNRHHKEILSGHG 253 (335)
Q Consensus 175 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (335)
. .+.++.+.+|...|.++.+.+. ..+.+|+ .|+.|++||+++. +++..+.++..+. -.....++.++++
T Consensus 360 ~---~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs--~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs~-- 429 (537)
T KOG0274|consen 360 T---GKCLKSLSGHTGRVYSLIVDSE--NRLLSGS--LDTTIKVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVSS-- 429 (537)
T ss_pred h---ceeeeeecCCcceEEEEEecCc--ceEEeee--eccceEeecCCchhhhhhhhcCCcccc-cccccccceeEec--
Confidence 5 6779999999999999988775 3555655 8999999999999 8999998877655 3334456666666
Q ss_pred eeeecCCCeEEEEECCCCceeecccC-CCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccc
Q 019847 254 FSASGDGNKLCLWKYPNMTKVGELQS-SNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVS 321 (335)
Q Consensus 254 ~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 321 (335)
+.|+.|++||..+++++..+.+ |.+.|..+++. ...+++++.||.+++||+..++.......
T Consensus 430 ----~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~ 492 (537)
T KOG0274|consen 430 ----SADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLS 492 (537)
T ss_pred ----cccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhh
Confidence 6799999999999999999998 67889988886 45788999999999999999887775533
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=231.65 Aligned_cols=283 Identities=19% Similarity=0.297 Sum_probs=236.6
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
..-.+.+++|+|. .-+++++.-.+.+|+..+....+. +......++++.|..||++||+|...|.|+|||..+...
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~--~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKT--FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI 102 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhh--HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH
Confidence 3456788999983 566667778899999887665442 234567899999999999999999999999999888778
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIW 171 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iw 171 (335)
++.+.+|..++..+.|+|.++..|++|+.|+.+++||+.+... ...+.+|+..|.+.+|+| ++..+++|+.||.|++|
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 8999999999999999998999999999999999999986664 557889999999999999 56799999999999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-ceEEEee-cCCcEeEEEeCCCCceee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-TCIHGID-AKAQICGLEWNRHHKEIL 249 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~ 249 (335)
|++... ..+..+ .|..+|..+.+-|.|. ++++++ ...+++||+.+| +.+.... ++..++|+.+..++..|+
T Consensus 182 DtR~~~--~~v~el-nhg~pVe~vl~lpsgs-~iasAg---Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 182 DTRSLT--SRVVEL-NHGCPVESVLALPSGS-LIASAG---GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred EeccCC--ceeEEe-cCCCceeeEEEcCCCC-EEEEcC---CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEe
Confidence 999753 233343 4899999999999986 555553 589999999965 4444444 677899999999998888
Q ss_pred eeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 250 SGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
++ +-|+.+++||+.+.+.+..+.- .++|.+++.+|+++.++.|..||.+.+=+....+
T Consensus 255 S~------sLD~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 255 SG------SLDRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred ec------ccccceEEEEccceEEEEeeec-ccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence 87 7799999999999998888764 5689999999999999999999998877554443
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=218.23 Aligned_cols=238 Identities=25% Similarity=0.496 Sum_probs=203.8
Q ss_pred eeeeecC---CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCCceeEee
Q 019847 20 KVIDWGR---NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAETSKLVRN 95 (335)
Q Consensus 20 ~~~~~~~---~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~ 95 (335)
.-++|++ +.+++++.||++++||.. ....++..++.|...|.++.|++ +++.+++++.|++|++|+...++.+.+
T Consensus 64 fdV~Wse~~e~~~~~a~GDGSLrl~d~~-~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~T 142 (311)
T KOG0277|consen 64 FDVAWSENHENQVIAASGDGSLRLFDLT-MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQT 142 (311)
T ss_pred eEeeecCCCcceEEEEecCceEEEeccC-CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEe
Confidence 3478887 468888999999999953 33356777889999999999999 566788889999999999999999999
Q ss_pred ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEcc
Q 019847 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 174 (335)
+.+|...|...+|+|..++++++++.|+.+++||++...+.+. +..|...|.++.|+. +.+.+++|+.|+.|+.||++
T Consensus 143 f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir 221 (311)
T KOG0277|consen 143 FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIR 221 (311)
T ss_pred ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehh
Confidence 9999999999999999999999999999999999998776555 788999999999998 78899999999999999999
Q ss_pred CCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-ceEEEeecCC-cEeEEEeCCCCceeeeee
Q 019847 175 KMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-TCIHGIDAKA-QICGLEWNRHHKEILSGH 252 (335)
Q Consensus 175 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (335)
... .++..+.+|.-.|..++|+|....++++++ .|-++++||...+ ..+.+.+++. -+..+.|++.....++.
T Consensus 222 ~~r--~pl~eL~gh~~AVRkvk~Sph~~~lLaSas--YDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs- 296 (311)
T KOG0277|consen 222 NLR--TPLFELNGHGLAVRKVKFSPHHASLLASAS--YDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAS- 296 (311)
T ss_pred hcc--ccceeecCCceEEEEEecCcchhhHhhhcc--ccceEEecccccchhhhhhhhccceEEeccccccccCceeee-
Confidence 864 567888999999999999999999999998 9999999999854 4455555554 47789998875443332
Q ss_pred eeeeecCCCeEEEEEC
Q 019847 253 GFSASGDGNKLCLWKY 268 (335)
Q Consensus 253 ~~~~~~~~~~i~i~d~ 268 (335)
.+-|+.++||+.
T Consensus 297 ----~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 297 ----TGWDELLYVWNP 308 (311)
T ss_pred ----cccccceeeecc
Confidence 367999999983
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=220.96 Aligned_cols=282 Identities=19% Similarity=0.372 Sum_probs=228.8
Q ss_pred CcccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCC---CCEEEEEECCCcEEEEeCCC
Q 019847 13 LMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHD---AKTLAVGYMDSKLQLWDAET 89 (335)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iw~~~~ 89 (335)
+.++-.+.++.-.++.+++++.||.+++||... +. ...+.+|.++|.+++|.-. ...+++++.|.++++|..+.
T Consensus 102 ~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~G-k~--~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 102 FLHDDWVSSVKGASKWILTGSYDGTSRIWDLKG-KS--IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred ccchhhhhhhcccCceEEEeecCCeeEEEecCC-ce--EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 345667888888888999999999999999754 43 4456799999998888543 34699999999999999887
Q ss_pred ceeE----eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccC------------------------CeeeEEee
Q 019847 90 SKLV----RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVS------------------------NNVTSCIK 141 (335)
Q Consensus 90 ~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------------------------~~~~~~~~ 141 (335)
++.. ....+|...|-++...+ ++..+++|+.|..|.+|+.++. +.++..+.
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 7543 33458999999999999 9999999999999999993211 12355678
Q ss_pred cCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEEC
Q 019847 142 AHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV 221 (335)
Q Consensus 142 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 221 (335)
+|..+|.++.|++ ...+.+++.|.+|+.||+..+.. ...+. .+..++++..+|.. .++++|+ .|..|++||.
T Consensus 258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~---~~~~~-~~ksl~~i~~~~~~-~Ll~~gs--sdr~irl~DP 329 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL---KSTLT-TNKSLNCISYSPLS-KLLASGS--SDRHIRLWDP 329 (423)
T ss_pred ccccceeeEEEcC-CCceEeecccceEEEEEeecccc---eeeee-cCcceeEeeccccc-ceeeecC--CCCceeecCC
Confidence 9999999999998 67899999999999999988654 33332 45678999999976 5777766 8999999999
Q ss_pred CCCc---eEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc-eeecccCCCCceeEeEEcCCCCEE
Q 019847 222 QKGT---CIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT-KVGELQSSNSRILDLSQSPDGLTV 296 (335)
Q Consensus 222 ~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l 296 (335)
+++. ..+.+. +.+-|.++.|+|...+.++. ++.|+++++||+++.+ ++..+.+|...|.++.|+.. .++
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S-----~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~I 403 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS-----GSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLI 403 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEE-----EecCCeEEEEEeccCCCcceeeccCCceEEEEeccCC-ceE
Confidence 8863 223333 45579999999999877543 4779999999999987 99999999999999999764 489
Q ss_pred EEEeCCCcEEEEecCC
Q 019847 297 ATAGADETIRFWEAFG 312 (335)
Q Consensus 297 ~~~~~dg~v~iw~~~~ 312 (335)
++||.|.+|+|+.-..
T Consensus 404 vSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 404 VSGGADNKLRIFKGSP 419 (423)
T ss_pred EeccCcceEEEecccc
Confidence 9999999999997543
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=246.36 Aligned_cols=243 Identities=19% Similarity=0.316 Sum_probs=198.7
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC----------------------------------------------
Q 019847 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET---------------------------------------------- 89 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~---------------------------------------------- 89 (335)
.|.+.|.++.|++||+|||+|+.||.|+||.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 7999999999999999999999999999998643
Q ss_pred --------------ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-
Q 019847 90 --------------SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN- 154 (335)
Q Consensus 90 --------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~- 154 (335)
.+++..+.+|.+.|..+.|+ ..++|++++.|.+|++|++....+ +..+ .|...|+|++|+|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~C-L~~F-~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKEC-LKVF-SHNDFVTCVAFNPV 420 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccc--cCCeeEeccccccEEeecCCCcce-eeEE-ecCCeeEEEEeccc
Confidence 01334567899999999999 688999999999999999985554 4444 5999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec--
Q 019847 155 EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-- 232 (335)
Q Consensus 155 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-- 232 (335)
|.++|++|+-||.||||++... .+.....-..-|++++|.|+|+..+ +|+ .+|.+++|+.+..+.......
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~----~Vv~W~Dl~~lITAvcy~PdGk~av-IGt--~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDK----KVVDWNDLRDLITAVCYSPDGKGAV-IGT--FNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred CCCcEeecccccceEEeecCcC----eeEeehhhhhhheeEEeccCCceEE-EEE--eccEEEEEEccCCeEEEeeeEee
Confidence 8999999999999999998752 2333334457799999999997544 444 999999999988777655431
Q ss_pred -------CCcEeEEEeCCCCce-eeeeeeeeeecCCCeEEEEECCCCceeecccCCCC--ceeEeEEcCCCCEEEEEeCC
Q 019847 233 -------KAQICGLEWNRHHKE-ILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNS--RILDLSQSPDGLTVATAGAD 302 (335)
Q Consensus 233 -------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d 302 (335)
+..|+.++|.|...- +++. +.|..|+|||.++..++..++++.. .-....|+.||++|+++++|
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVT------SnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seD 567 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVT------SNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASED 567 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEe------cCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecC
Confidence 237999999987663 3332 6799999999999999999987644 23456899999999999999
Q ss_pred CcEEEEecCCCCC
Q 019847 303 ETIRFWEAFGPSG 315 (335)
Q Consensus 303 g~v~iw~~~~~~~ 315 (335)
..|++|++.....
T Consensus 568 s~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 568 SWVYIWKNDSFNS 580 (712)
T ss_pred ceEEEEeCCCCcc
Confidence 9999999866543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=208.86 Aligned_cols=281 Identities=17% Similarity=0.257 Sum_probs=229.9
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC--CCcEEEEeCCCc
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM--DSKLQLWDAETS 90 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~ 90 (335)
....+++++|+++ .+++++.|..+++||..+++..+.+. .+...+..++|......++.++. |.+|+..++.+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~--skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN--SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee--cccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence 3567889999984 46666788899999999998766554 45667888999887777777765 889999999999
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
+.++.+.+|...|.+++.+| .++.+++++.|++|++||++..++... +. ...-..++|.|+|-++|++.....|++
T Consensus 91 kylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~-l~--~~~~pi~AfDp~GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGL-LN--LSGRPIAAFDPEGLIFALANGSELIKL 166 (311)
T ss_pred ceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceE-Ee--cCCCcceeECCCCcEEEEecCCCeEEE
Confidence 99999999999999999999 779999999999999999996665333 22 223345789999999999998889999
Q ss_pred EEccCCCcccceeecc---CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCc----EeEEEeCC
Q 019847 171 WERSKMSSSKSLHRFT---DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ----ICGLEWNR 243 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~ 243 (335)
||+|.... .+..++. +.....+.+.|+|+|+.++.+. ..+.+++.|.-+|..+.++..... .....|+|
T Consensus 167 yD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT---~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP 242 (311)
T KOG1446|consen 167 YDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLST---NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP 242 (311)
T ss_pred EEecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEe---CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence 99997643 2333332 3467789999999999888876 689999999999998888875432 35789999
Q ss_pred CCceeeeeeeeeeecCCCeEEEEECCCCceeecccC-CCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 244 HHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS-SNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+++++++| ++||.|++|+++++..+..+.+ +.+++.++.|+|...++++++ ..+.+|=....
T Consensus 243 ds~Fvl~g------s~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~ 305 (311)
T KOG1446|consen 243 DSKFVLSG------SDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDED 305 (311)
T ss_pred CCcEEEEe------cCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecccc
Confidence 99999988 7799999999999999999988 688999999999977776664 57888866543
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=224.93 Aligned_cols=277 Identities=20% Similarity=0.325 Sum_probs=238.2
Q ss_pred ceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 19 SKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 19 ~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
+.+++..+ +.+++++.|..+.++|...++... .++||+..|+.+.++|+...+++++.|..|+||...........
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~--~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA--TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEecchhhhhh--hccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 45566555 678899999999999999988744 56799999999999999999999999999999999888888888
Q ss_pred cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeec-CCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA-HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 175 (335)
..|..+|+.+..+| .+.+|++++.|++..+.|++++..+...... ..-.+++.+|+|||.+|.+|..||.++|||+..
T Consensus 300 ~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred ccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 89999999999999 9999999999999999999988876554332 234589999999999999999999999999887
Q ss_pred CCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC--cEeEEEeCCCCceeeeeee
Q 019847 176 MSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA--QICGLEWNRHHKEILSGHG 253 (335)
Q Consensus 176 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 253 (335)
.. ....|.+|.++|..++|+.+| +++++++ +|+.|++||+|+.+...++.... ++.++.|++.|.+++.+
T Consensus 379 ~~---~~a~Fpght~~vk~i~FsENG-Y~Lat~a--dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-- 450 (506)
T KOG0289|consen 379 QT---NVAKFPGHTGPVKAISFSENG-YWLATAA--DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-- 450 (506)
T ss_pred cc---ccccCCCCCCceeEEEeccCc-eEEEEEe--cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee--
Confidence 43 578889999999999999999 5566655 89999999999999888887654 69999999999999887
Q ss_pred eeeecCCCeEEEEEC--CCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 254 FSASGDGNKLCLWKY--PNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 254 ~~~~~~~~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
+.+=.|++++- .+.+.+..+..|.+..+.+.|..+.+++++++.|..++++.+
T Consensus 451 ----g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 451 ----GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ----cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 44555555552 256778888889989999999999999999999999988864
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=237.54 Aligned_cols=268 Identities=16% Similarity=0.247 Sum_probs=206.4
Q ss_pred cccceeeeecCCceEEEecCCeEEEEEecCCcee----------e-EEeecCCCCCceEEEEcC-CCCEEEEEECCCcEE
Q 019847 16 DYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVK----------K-LLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQ 83 (335)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~----------~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 83 (335)
+..+...+|+...++++..+.....|+...+... . ...+.+|.+.|.+++|+| ++++|++|+.||+|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 3445556677666777776666667765433211 1 123568999999999999 889999999999999
Q ss_pred EEeCCCc-------eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCC
Q 019847 84 LWDAETS-------KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156 (335)
Q Consensus 84 iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 156 (335)
+||+.++ +.+..+.+|...|.+++|+|..+++|++++.|+.|++||++++.. ...+..|...|.+++|+|++
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~-~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA-VEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE-EEEEcCCCCceEEEEEECCC
Confidence 9999765 346678899999999999995568999999999999999986654 55677899999999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCCcccceeeccCCCCC-eeEEEecCCCCcEEEEec-CCCCCeEEEEECCCCc-eEEEeec-
Q 019847 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGG-VKALAWSPHQVNVLATGG-GREDGCIKIWNVQKGT-CIHGIDA- 232 (335)
Q Consensus 157 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~-~~~~~~~- 232 (335)
++|++++.|+.|++||++++ +.+..+.+|.+. ...+.|.+++..+++++. ++.|+.|++||+++.. ++.....
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg---~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d 257 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDG---TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD 257 (493)
T ss_pred CEEEEecCCCEEEEEECCCC---cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC
Confidence 99999999999999998874 346666777664 456789998877776652 2358999999998754 3333332
Q ss_pred -CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccC-CCCceeEeEEcCC
Q 019847 233 -KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS-SNSRILDLSQSPD 292 (335)
Q Consensus 233 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~ 292 (335)
...+....|++++..++++. ..|+.|++||+.+++++..... +..++..++|.|.
T Consensus 258 ~~~~~~~~~~d~d~~~L~lgg-----kgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 258 QSSALFIPFFDEDTNLLYIGS-----KGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCCceEEEEEcCCCCEEEEEE-----eCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 33466678999999887661 3599999999999888766543 4456788888885
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=227.48 Aligned_cols=266 Identities=18% Similarity=0.211 Sum_probs=228.2
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc---eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEe
Q 019847 53 QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS---KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHD 129 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 129 (335)
.+..|.+.|.-+.||++|+|||+++.|.+..+|++... ++.+++.+|..+|..+.|+| +.++|++++.+..+.+||
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHheeecc
Confidence 34679999999999999999999999999999987543 45778889999999999999 999999999999999999
Q ss_pred cccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCC-CCCeeEEEecCCCCcEEEEe
Q 019847 130 VRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDH-CGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~ 208 (335)
..++......-.++...+.+++|.|||..+++|+.|+.+..||+.... +...++- ...|.+++..+||+++++++
T Consensus 298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~----~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 298 VDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI----LGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred CCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch----hhcccccccceeEEEEEcCCCcEEEEEe
Confidence 998887655555567889999999999999999999999999987532 3333332 24589999999999999988
Q ss_pred cCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCc--eeE
Q 019847 209 GGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSR--ILD 286 (335)
Q Consensus 209 ~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~--i~~ 286 (335)
.|..|++++.++......+..+.++++++.|.+++++++. -.+..+++||++....+..+.+|... +..
T Consensus 374 ---~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lvn------L~~qei~LWDl~e~~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 374 ---VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVN------LQDQEIHLWDLEENKLVRKYFGHKQGHFIIR 444 (519)
T ss_pred ---cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEE------cccCeeEEeecchhhHHHHhhcccccceEEE
Confidence 6999999999888777777888999999999999999877 45999999999999999999999764 222
Q ss_pred eEEc-CCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 287 LSQS-PDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 287 ~~~~-~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
-+|- .+..++++|++|+.|+||+...++....+.+|...|..+++.
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswN 491 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWN 491 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecC
Confidence 2443 355899999999999999999999999999999988877653
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=256.22 Aligned_cols=264 Identities=16% Similarity=0.266 Sum_probs=211.7
Q ss_pred CCeEEEEEecCCceeeEEe---ecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc----e----eEeeecccccce
Q 019847 35 GPVLFLWKWENGKVKKLLQ---VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS----K----LVRNLEGHHRRV 103 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~----~~~~~~~~~~~v 103 (335)
+|.+++|+....+...... +..|...|.+++|+|++++||+|+.|+.|+||++.+. . ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 5667888877655433322 3458999999999999999999999999999997542 1 122233 34678
Q ss_pred eEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccce
Q 019847 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSL 182 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 182 (335)
.+++|++..+.+|++++.||.|++||+.++. ....+.+|...|++++|+| ++.+|++|+.||.|++||++... .+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~---~~ 611 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV---SI 611 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc---EE
Confidence 9999998678899999999999999998654 4566788999999999997 78999999999999999988643 34
Q ss_pred eeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc-eEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCC
Q 019847 183 HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT-CIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDG 260 (335)
Q Consensus 183 ~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (335)
..+.. ...+.++.|++....++++++ .|+.|++||+++.+ .+..+.. ...+.++.|. ++..++++ +.|
T Consensus 612 ~~~~~-~~~v~~v~~~~~~g~~latgs--~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~------s~D 681 (793)
T PLN00181 612 GTIKT-KANICCVQFPSESGRSLAFGS--ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSS------STD 681 (793)
T ss_pred EEEec-CCCeEEEEEeCCCCCEEEEEe--CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEE------ECC
Confidence 44443 367899999765446777776 89999999998765 3445544 4589999997 56677666 779
Q ss_pred CeEEEEECCC------CceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 261 NKLCLWKYPN------MTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 261 ~~i~i~d~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+.|++||+.. ..++..+.+|...+..++|+|++.+|++|+.||.|++|+...+
T Consensus 682 ~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 682 NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999999974 3567788999999999999999999999999999999997654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=229.58 Aligned_cols=291 Identities=16% Similarity=0.255 Sum_probs=233.1
Q ss_pred cccceeeeecC--CceEEEecCCeEEEEEecCCce--eeEEee-cCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc
Q 019847 16 DYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKV--KKLLQV-PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 16 ~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~--~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
...+.++++.+ -++++++.|-.|++||+..-.. .....+ +.....|.+++|++.|..|++.+.....+|+|-...
T Consensus 167 tk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~ 246 (641)
T KOG0772|consen 167 TKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGF 246 (641)
T ss_pred ceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCc
Confidence 34455666665 5899999999999999875322 111111 234456999999999999999988999999996544
Q ss_pred eeEee------------ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee-----cCCCCEEEEEee
Q 019847 91 KLVRN------------LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK-----AHSGEVCGLKWS 153 (335)
Q Consensus 91 ~~~~~------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-----~~~~~i~~~~~~ 153 (335)
+.+.. -++|...+++.+|+|.+...|++++.||++++||+...+...+.+. +..-+++.++|+
T Consensus 247 ~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~n 326 (641)
T KOG0772|consen 247 EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWN 326 (641)
T ss_pred eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecC
Confidence 43332 3578899999999998899999999999999999987665444433 234568999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCC--CeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc-eEEEe
Q 019847 154 NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCG--GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT-CIHGI 230 (335)
Q Consensus 154 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~ 230 (335)
++++++|+|..||.|.+|+.........+..-..|.. .|+|+.|+++|++|+.-+ .|+++++||+++.+ ++...
T Consensus 327 rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg---~D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 327 RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG---FDDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred CCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc---CCCceeeeeccccccchhhh
Confidence 9999999999999999999876544445555667877 899999999998777655 79999999999764 34333
Q ss_pred e---cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEE
Q 019847 231 D---AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRF 307 (335)
Q Consensus 231 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 307 (335)
. ...+-+.++|||+.+.+++|....-+...+.+.+||..+.+.++.+.-....|..+.|+|.-+.|++|+.||.+++
T Consensus 404 tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~v 483 (641)
T KOG0772|consen 404 TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHV 483 (641)
T ss_pred cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEE
Confidence 2 3456788999999999999987777777889999999999999998888888999999999888999999999998
Q ss_pred Ee
Q 019847 308 WE 309 (335)
Q Consensus 308 w~ 309 (335)
|=
T Consensus 484 yY 485 (641)
T KOG0772|consen 484 YY 485 (641)
T ss_pred EE
Confidence 73
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=221.44 Aligned_cols=264 Identities=20% Similarity=0.355 Sum_probs=223.3
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCC--CCEEEEeeCCCcEEEEecccC
Q 019847 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWN--GHILTSGSKDKSIINHDVRVS 133 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~ 133 (335)
-|.+.|.++... ++.+++|+.||.+++||. .|+....+.+|.++|.+++|...+ ...|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 367777777775 789999999999999996 588899999999999999886522 236999999999999999866
Q ss_pred Cee---eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCC----------------------CcccceeeccCC
Q 019847 134 NNV---TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM----------------------SSSKSLHRFTDH 188 (335)
Q Consensus 134 ~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------~~~~~~~~~~~~ 188 (335)
... .....+|...|.+++..+++..+++|+.|..|.+|+.... ....++..+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 542 2334589999999999999999999999999999993211 123346678899
Q ss_pred CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEEC
Q 019847 189 CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268 (335)
Q Consensus 189 ~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 268 (335)
..+|.++.|++.+ .+.+++ .|.+|+.||+.++....++..+..+.++..+|..+.+++| +.|..+++||.
T Consensus 260 t~~Vs~V~w~d~~--v~yS~S--wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~g------ssdr~irl~DP 329 (423)
T KOG0313|consen 260 TEPVSSVVWSDAT--VIYSVS--WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASG------SSDRHIRLWDP 329 (423)
T ss_pred ccceeeEEEcCCC--ceEeec--ccceEEEEEeecccceeeeecCcceeEeecccccceeeec------CCCCceeecCC
Confidence 9999999999943 566665 9999999999999999999999999999999999999988 78999999999
Q ss_pred CCCc---eeecccCCCCceeEeEEcCCC-CEEEEEeCCCcEEEEecCCCC-CCCCccccccccccceec
Q 019847 269 PNMT---KVGELQSSNSRILDLSQSPDG-LTVATAGADETIRFWEAFGPS-GDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 269 ~~~~---~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~-~~~~~~~~~~~i~~~~~~ 332 (335)
+++. ..+++.+|.+.|.++.|+|.. .+|++|+.|+++++||++..+ ....+.+|.+.|.++.+.
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN 398 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc
Confidence 8753 356788999999999999965 568899999999999999988 667788999999887653
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=209.10 Aligned_cols=269 Identities=22% Similarity=0.336 Sum_probs=225.0
Q ss_pred ceEEEecCCeEEEEEecCC----------ceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec
Q 019847 28 NVLAVALGPVLFLWKWENG----------KVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 97 (335)
++++++....|.-+++.-. .+.+.+.++.|..+|++++. ++.++|+|+.|.+|+|||+.+...+..+-
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee
Confidence 4677778887777776422 23456778899999999998 78999999999999999999999999999
Q ss_pred ccccceeEeeecCCCC--CEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC
Q 019847 98 GHHRRVATSSWNHWNG--HILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 98 ~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 175 (335)
.|.+.|+++.|.+ .- +.|++|+.||.|.+|+...- .....+++|.+.|+.++.+|.+++-++.+.|+.++.||+-+
T Consensus 81 ~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 81 SHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred ccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence 9999999999987 43 38999999999999999855 56788999999999999999999999999999999999887
Q ss_pred CCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeee
Q 019847 176 MSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFS 255 (335)
Q Consensus 176 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (335)
+.....+. + ......+.|+|.|.++++.+ ...|-+|.+.+......+..+..+.++.|...+. +++|
T Consensus 159 Gr~a~v~~-L---~~~at~v~w~~~Gd~F~v~~----~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~-L~vG---- 225 (362)
T KOG0294|consen 159 GRVAFVLN-L---KNKATLVSWSPQGDHFVVSG----RNKIDIYQLDNASVFREIENPKRILCATFLDGSE-LLVG---- 225 (362)
T ss_pred Cccceeec-c---CCcceeeEEcCCCCEEEEEe----ccEEEEEecccHhHhhhhhccccceeeeecCCce-EEEe----
Confidence 65433222 2 22234599999998777765 5789999999988888887777788888765544 4444
Q ss_pred eecCCCeEEEEECCCCceeecccCCCCceeEeEE--cCCCCEEEEEeCCCcEEEEecCCCCC
Q 019847 256 ASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQ--SPDGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 256 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
.+++.|.+||.....+...+.+|..+|-++.+ .|++.+|+|++.||.|++||++....
T Consensus 226 --~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 226 --GDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred --cCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence 67999999999999999999999999999984 56789999999999999999987633
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=241.85 Aligned_cols=252 Identities=16% Similarity=0.298 Sum_probs=219.8
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccC
Q 019847 54 VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVS 133 (335)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 133 (335)
++.....|..++|+|....++++-..|.|++||.+-+.++..|..|.++|+.+.|+| ...+|++|+.|-.|++|+..+.
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccc
Confidence 344567899999999999999999999999999999999999999999999999999 9999999999999999999865
Q ss_pred CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC
Q 019847 134 NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213 (335)
Q Consensus 134 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 213 (335)
+. ...+.+|...|..+.|++...+++++|.|.+|+||+..+ .+.+..+.+|+..|.|..|+|..+ ++++++ .|
T Consensus 84 rc-lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs---r~~iavltGHnHYVMcAqFhptED-lIVSaS--LD 156 (1202)
T KOG0292|consen 84 RC-LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS---RKCIAVLTGHNHYVMCAQFHPTED-LIVSAS--LD 156 (1202)
T ss_pred ee-hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC---CceEEEEecCceEEEeeccCCccc-eEEEec--cc
Confidence 54 666889999999999999999999999999999999655 677999999999999999999875 777766 99
Q ss_pred CeEEEEECCCCce-----------------------------EEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeE
Q 019847 214 GCIKIWNVQKGTC-----------------------------IHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKL 263 (335)
Q Consensus 214 ~~i~i~d~~~~~~-----------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (335)
.+||+||+..-+. .+.+++ ...|+-++|+|.-..+++| ++|..|
T Consensus 157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG------~DDRqV 230 (1202)
T KOG0292|consen 157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG------ADDRQV 230 (1202)
T ss_pred ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec------CCccee
Confidence 9999999853110 112222 3468889999999999988 899999
Q ss_pred EEEECCCCc--eeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc
Q 019847 264 CLWKYPNMT--KVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 264 ~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 319 (335)
++|.+..-+ .+-+..+|.+.|.++-|+|...++++.|+|+.|++||+...+.....
T Consensus 231 KlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 231 KLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred eEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence 999986544 35678899999999999999999999999999999999988776654
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=205.16 Aligned_cols=260 Identities=18% Similarity=0.227 Sum_probs=212.7
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeC--CCcEEEEecccC
Q 019847 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK--DKSIINHDVRVS 133 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~ 133 (335)
.....|.++.|+++|.++++++.|.++++||..+++.++.+..++-.+..++|.. ..+.++.++. |.+|+..++.+.
T Consensus 12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEeecC
Confidence 4567899999999999999999999999999999999999998888999999988 6666666665 889999999855
Q ss_pred CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC
Q 019847 134 NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213 (335)
Q Consensus 134 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 213 (335)
+ .++.+.+|...|.+++.+|-+..+++++.|++|++||++.......+. ...-..++|+|.| .++|++. ..
T Consensus 91 k-ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~-----~~~~pi~AfDp~G-LifA~~~--~~ 161 (311)
T KOG1446|consen 91 K-YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN-----LSGRPIAAFDPEG-LIFALAN--GS 161 (311)
T ss_pred c-eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe-----cCCCcceeECCCC-cEEEEec--CC
Confidence 5 588899999999999999988999999999999999999644322222 2223458899999 4666664 44
Q ss_pred CeEEEEECCCC--ceEEEeec----CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCce---
Q 019847 214 GCIKIWNVQKG--TCIHGIDA----KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRI--- 284 (335)
Q Consensus 214 ~~i~i~d~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i--- 284 (335)
..|++||++.- .+..++.. ..+.+.+.|+|+|++++.+ +..+.+++.|.-+|....++..+...-
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls------T~~s~~~~lDAf~G~~~~tfs~~~~~~~~~ 235 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS------TNASFIYLLDAFDGTVKSTFSGYPNAGNLP 235 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE------eCCCcEEEEEccCCcEeeeEeeccCCCCcc
Confidence 49999999864 34444432 4578999999999999987 678999999999999998888765532
Q ss_pred eEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccc-ccccccccee
Q 019847 285 LDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVS-HLAGLVSLKT 331 (335)
Q Consensus 285 ~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~i~~~~~ 331 (335)
.+.+|+||++++++|+.||+|.+|+++++.......+ +...+..+.|
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~f 283 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRF 283 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCcccccc
Confidence 5678999999999999999999999999888776666 3555554443
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=223.83 Aligned_cols=276 Identities=19% Similarity=0.307 Sum_probs=233.6
Q ss_pred cccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeE
Q 019847 16 DYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV 93 (335)
Q Consensus 16 ~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 93 (335)
...+..+.|-++ .+.+++.|..|++|+...++....-.+.+..+.|+.+.|.++++++++++.|+.+++|++...+..
T Consensus 175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~ 254 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLR 254 (459)
T ss_pred ccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhh
Confidence 445667888764 688899999999999988876566677788889999999999999999999999999999999999
Q ss_pred eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 94 RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
.++.+|.+.|+++.|.. ....+++|+.|.+|+.||+....+....+. ...+..|..+ ...+++|..|++|++||+
T Consensus 255 ~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~--~S~cnDI~~~--~~~~~SgH~DkkvRfwD~ 329 (459)
T KOG0288|consen 255 HTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLP--GSQCNDIVCS--ISDVISGHFDKKVRFWDI 329 (459)
T ss_pred hhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccc--cccccceEec--ceeeeecccccceEEEec
Confidence 99999999999999987 555599999999999999987555444332 3445566655 567899999999999998
Q ss_pred cCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-----CCcEeEEEeCCCCcee
Q 019847 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-----KAQICGLEWNRHHKEI 248 (335)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 248 (335)
+... .......+ +.|+++..++++..+++++ .|.++.+.|+++.+....+.. ....+.+.|||++.|+
T Consensus 330 Rs~~---~~~sv~~g-g~vtSl~ls~~g~~lLsss---RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yv 402 (459)
T KOG0288|consen 330 RSAD---KTRSVPLG-GRVTSLDLSMDGLELLSSS---RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYV 402 (459)
T ss_pred cCCc---eeeEeecC-cceeeEeeccCCeEEeeec---CCCceeeeecccccEEEEeeccccccccccceeEECCCCcee
Confidence 8754 34444433 5899999999998888875 799999999999998888764 3468899999999999
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceeecccCCCC--ceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNS--RILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
++| +.||.|+||++.++++...+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 403 aAG------S~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 403 AAG------SADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eec------cCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 998 7899999999999999888776554 499999999999999999999999993
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=228.26 Aligned_cols=303 Identities=17% Similarity=0.273 Sum_probs=251.8
Q ss_pred cccceeeeecCC----ceEEEecCCeEEEEEecC-Cce------eeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEE
Q 019847 16 DYYSKVIDWGRN----NVLAVALGPVLFLWKWEN-GKV------KKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQL 84 (335)
Q Consensus 16 ~~~~~~~~~~~~----~~~~~~~~~~i~vw~~~~-~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (335)
...+.+++|-++ ..++.-.++++..|.++. +.. ...+.+.+|...|.+++++.+...+++|+ .+.+++
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~Siki 398 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKI 398 (888)
T ss_pred hhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEE
Confidence 344566777552 234446788999998875 221 22366789999999999999988777775 568999
Q ss_pred EeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC
Q 019847 85 WDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD 164 (335)
Q Consensus 85 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (335)
|+..+.++++++... -+.+..|.| .+++++.|...|.+.+||+.... +....++|.+.|++++.+||+..+++|+.
T Consensus 399 Wn~~t~kciRTi~~~--y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~-l~Eti~AHdgaIWsi~~~pD~~g~vT~sa 474 (888)
T KOG0306|consen 399 WNRDTLKCIRTITCG--YILASKFVP-GDRYIVLGTKNGELQVFDLASAS-LVETIRAHDGAIWSISLSPDNKGFVTGSA 474 (888)
T ss_pred EEccCcceeEEeccc--cEEEEEecC-CCceEEEeccCCceEEEEeehhh-hhhhhhccccceeeeeecCCCCceEEecC
Confidence 999999999999753 889999999 99999999999999999998655 45667799999999999999999999999
Q ss_pred CCeEEEEEccCCCc--cc--c-ee----eccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC-
Q 019847 165 DNVVRIWERSKMSS--SK--S-LH----RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA- 234 (335)
Q Consensus 165 dg~i~iwd~~~~~~--~~--~-~~----~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~- 234 (335)
|.+|++||..-... .. . +. ....-...|.|+.++||++++.++- -|+++++|-+.+.+..-.+.+|.
T Consensus 475 DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL---LdnTVkVyflDtlKFflsLYGHkL 551 (888)
T KOG0306|consen 475 DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL---LDNTVKVYFLDTLKFFLSLYGHKL 551 (888)
T ss_pred CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe---ccCeEEEEEecceeeeeeeccccc
Confidence 99999999653211 11 1 10 1112356799999999997555543 89999999999998887777654
Q ss_pred cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 235 QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
|+.++..+|+++.+++| +.|.+|++|-++-|.+-..+-+|...|.++.|-|+...++++|.|+.|+-||-....
T Consensus 552 PV~smDIS~DSklivTg------SADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe 625 (888)
T KOG0306|consen 552 PVLSMDISPDSKLIVTG------SADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE 625 (888)
T ss_pred ceeEEeccCCcCeEEec------cCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh
Confidence 99999999999999998 779999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccceec
Q 019847 315 GDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 315 ~~~~~~~~~~~i~~~~~~ 332 (335)
....+.+|...|..+..+
T Consensus 626 ~iq~L~~H~~ev~cLav~ 643 (888)
T KOG0306|consen 626 EIQKLDGHHSEVWCLAVS 643 (888)
T ss_pred hheeeccchheeeeeEEc
Confidence 999999999988877653
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=214.59 Aligned_cols=260 Identities=19% Similarity=0.316 Sum_probs=220.3
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee--------cccccceeEeeecCCCCCEEEEeeCCCcEEE
Q 019847 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL--------EGHHRRVATSSWNHWNGHILTSGSKDKSIIN 127 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 127 (335)
+..+.+-|..|+|||+||++|+.||-|.+||..+|+..+.+ -.+..+|.|+.|+. +...+++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEE
Confidence 34566889999999999999999999999999999876544 35778999999999 9999999999999999
Q ss_pred EecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEE
Q 019847 128 HDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207 (335)
Q Consensus 128 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 207 (335)
|.++++.++.+.-..|...|+++.|+.|+..+++++.|.++++.-++. ++.++.+.+|.+.|+...|.++|..++.+
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS---GK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS---GKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc---chhHHHhcCccccccceEEcCCCCeEEEe
Confidence 999999987777779999999999999999999999999999999766 56788999999999999999999887776
Q ss_pred ecCCCCCeEEEEECCCCceEEEeecC---CcEeEEEeCCCCc-eeeeeeeeeeecCCCeEEEEECCCCceeecccC---C
Q 019847 208 GGGREDGCIKIWNVQKGTCIHGIDAK---AQICGLEWNRHHK-EILSGHGFSASGDGNKLCLWKYPNMTKVGELQS---S 280 (335)
Q Consensus 208 ~~g~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~ 280 (335)
+ .||+|++|+..+.+++.+++.. .++.++-.-|.+. .++++ ...++++|.++ .++.+.++.. .
T Consensus 367 S---sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC------Nrsntv~imn~-qGQvVrsfsSGkRE 436 (508)
T KOG0275|consen 367 S---SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC------NRSNTVYIMNM-QGQVVRSFSSGKRE 436 (508)
T ss_pred c---CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE------cCCCeEEEEec-cceEEeeeccCCcc
Confidence 6 6999999999999999988753 4678877777654 33433 56888999886 4666666643 3
Q ss_pred CCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccc
Q 019847 281 NSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSL 329 (335)
Q Consensus 281 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~ 329 (335)
.+...+.+.+|.|.++.+.++|+.++.|.+..++.+..+..|..-+.++
T Consensus 437 gGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl 485 (508)
T KOG0275|consen 437 GGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGL 485 (508)
T ss_pred CCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccccccc
Confidence 3456778899999999999999999999999998877766666555443
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=220.73 Aligned_cols=259 Identities=19% Similarity=0.302 Sum_probs=217.7
Q ss_pred CCCCceEEEEcCCCCE-EEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe
Q 019847 57 EDDYPTSVSWSHDAKT-LAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN 135 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 135 (335)
..+.|.+++|+|...+ +|+.+ .-.+.||+..+....+.+......+.++.|.. +|.+|++|...|.|++||+. .+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k-~r~ 101 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMK-SRV 101 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeec-CCeEEEccCCcCcEEEeccc-cHH
Confidence 3467999999996543 44443 45799999999888888888889999999998 99999999999999999954 455
Q ss_pred eeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC
Q 019847 136 VTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG 214 (335)
Q Consensus 136 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 214 (335)
+.+.+.+|+.++..+.|+| ++..|++|+.|+.+++||+.+.. ....+.+|++.|.+.+|+|..+.++++|+ .||
T Consensus 102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~---v~~~l~~htDYVR~g~~~~~~~hivvtGs--YDg 176 (487)
T KOG0310|consen 102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY---VQAELSGHTDYVRCGDISPANDHIVVTGS--YDG 176 (487)
T ss_pred HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE---EEEEecCCcceeEeeccccCCCeEEEecC--CCc
Confidence 6778899999999999999 56788889999999999988754 35578899999999999999999999988 999
Q ss_pred eEEEEECCCC-ceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC-ceeecccCCCCceeEeEEcCC
Q 019847 215 CIKIWNVQKG-TCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM-TKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 215 ~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~ 292 (335)
.|++||++.. ..+.++.++.+|..+.+-|.|..++++ ..+.+++||+.+| +.+..+..|...|+|+.+..+
T Consensus 177 ~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasA-------gGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~ 249 (487)
T KOG0310|consen 177 KVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASA-------GGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASD 249 (487)
T ss_pred eEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEc-------CCCeEEEEEecCCceehhhhhcccceEEEEEeecC
Confidence 9999999987 888999999999999999999988875 3789999999955 555556669999999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCCCcccccccccccee
Q 019847 293 GLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 293 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~ 331 (335)
+..|++|+-|+.|++||+.+-+... .....++|.++..
T Consensus 250 ~~rLlS~sLD~~VKVfd~t~~Kvv~-s~~~~~pvLsiav 287 (487)
T KOG0310|consen 250 STRLLSGSLDRHVKVFDTTNYKVVH-SWKYPGPVLSIAV 287 (487)
T ss_pred CceEeecccccceEEEEccceEEEE-eeecccceeeEEe
Confidence 9999999999999999976654433 2234445555443
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=206.46 Aligned_cols=265 Identities=17% Similarity=0.322 Sum_probs=238.8
Q ss_pred EeecCCCCCceEEEEcC---CCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEE
Q 019847 52 LQVPGEDDYPTSVSWSH---DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINH 128 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~ 128 (335)
+...+|+.+|..++|+| +|-+|++++.||.-.+-+-++|..+.+|.+|.+.|++..... +....++++.|-+-++|
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~-na~~aasaaadftakvw 86 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVW 86 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCc-hhhhhhhhcccchhhhh
Confidence 34578999999999986 888999999999999999999999999999999999999987 77888999999999999
Q ss_pred ecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEe
Q 019847 129 DVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 129 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
|.-++..+... .|..-|.+++|+.|.++|++|+.+..+|+||++.++ .+...+.+|.+.|..+.|....+.++.++
T Consensus 87 ~a~tgdelhsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~--App~E~~ghtg~Ir~v~wc~eD~~iLSSa 162 (334)
T KOG0278|consen 87 DAVTGDELHSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK--APPKEISGHTGGIRTVLWCHEDKCILSSA 162 (334)
T ss_pred hhhhhhhhhhh--hhhheeeeEEecccchhhhccchHHHhhhhhccCCC--CCchhhcCCCCcceeEEEeccCceEEeec
Confidence 99888775543 588889999999999999999999999999998764 45677889999999999998887777764
Q ss_pred cCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeE
Q 019847 209 GGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLS 288 (335)
Q Consensus 209 ~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 288 (335)
.|++||+||.+++..++++..+.+++++.++++|+++.+. ..+.|.+||..+..+++.++... .|.+.+
T Consensus 163 ---dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-------~gssV~Fwdaksf~~lKs~k~P~-nV~SAS 231 (334)
T KOG0278|consen 163 ---DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-------YGSSVKFWDAKSFGLLKSYKMPC-NVESAS 231 (334)
T ss_pred ---cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-------cCceeEEeccccccceeeccCcc-cccccc
Confidence 8999999999999999999999999999999999999875 37899999999999998887654 489999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCCCCCCc-cccccccccceec
Q 019847 289 QSPDGLTVATAGADETIRFWEAFGPSGDEDS-VSHLAGLVSLKTS 332 (335)
Q Consensus 289 ~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-~~~~~~i~~~~~~ 332 (335)
++|+...+++|++|+.++.||..++...... .+|.++|.+++|+
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS 276 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS 276 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC
Confidence 9999999999999999999999999888875 8999999999886
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=200.69 Aligned_cols=277 Identities=18% Similarity=0.254 Sum_probs=216.3
Q ss_pred cccccCCCCcccccceeeeecC--CceE-EEecCCeEEEEEecC-CceeeEEeecCCCCCceEEEEcCCCCEEEEEECCC
Q 019847 5 ARILDAPYLMEDYYSKVIDWGR--NNVL-AVALGPVLFLWKWEN-GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDS 80 (335)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~i~vw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (335)
...++.+..++| .+.+++|++ ..++ +++.|++||+|+++. +.... .....|.++|.+++|+.||..+++|+.|+
T Consensus 17 ~kd~ev~~pP~D-sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk 94 (347)
T KOG0647|consen 17 NKDYEVPNPPED-SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDK 94 (347)
T ss_pred ccceecCCCccc-chheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCC
Confidence 445556666665 678899998 3455 677999999999987 44444 34457899999999999999999999999
Q ss_pred cEEEEeCCCceeEeeecccccceeEeeecCCCCC--EEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCE
Q 019847 81 KLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGH--ILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNL 158 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 158 (335)
.+++||+.+++ +..+..|..+|..+.|-+ ... .|++|+.|.+|+.||.+...++... .....+.++.. ...+
T Consensus 95 ~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~--~LPeRvYa~Dv--~~pm 168 (347)
T KOG0647|consen 95 QAKLWDLASGQ-VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATL--QLPERVYAADV--LYPM 168 (347)
T ss_pred ceEEEEccCCC-eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeee--eccceeeehhc--cCce
Confidence 99999999994 667788999999999987 444 8999999999999999976654443 24556666654 3457
Q ss_pred EEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC--ceEEEeecCC--
Q 019847 159 LASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG--TCIHGIDAKA-- 234 (335)
Q Consensus 159 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~~~-- 234 (335)
++++..+..|.+|+++++...... .....+-.++|++..++.+.. +.|+ .+|.+.+..+..+ +.-..++.|.
T Consensus 169 ~vVata~r~i~vynL~n~~te~k~-~~SpLk~Q~R~va~f~d~~~~-alGs--iEGrv~iq~id~~~~~~nFtFkCHR~~ 244 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLENPPTEFKR-IESPLKWQTRCVACFQDKDGF-ALGS--IEGRVAIQYIDDPNPKDNFTFKCHRST 244 (347)
T ss_pred eEEEecCCcEEEEEcCCCcchhhh-hcCcccceeeEEEEEecCCce-Eeee--ecceEEEEecCCCCccCceeEEEeccC
Confidence 888899999999999765321111 111234458899999888655 5555 8999999998876 3333344322
Q ss_pred --------cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEE
Q 019847 235 --------QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATA 299 (335)
Q Consensus 235 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 299 (335)
.|++++|+|....+++. +.||++.+||-+....+.+.+.|..+|++.+|+.+|.+++-+
T Consensus 245 ~~~~~~VYaVNsi~FhP~hgtlvTa------GsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 245 NSVNDDVYAVNSIAFHPVHGTLVTA------GSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CCCCCceEEecceEeecccceEEEe------cCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 47889999998888876 789999999999999999999999999999999999988765
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=194.88 Aligned_cols=272 Identities=18% Similarity=0.330 Sum_probs=231.1
Q ss_pred cccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCCc
Q 019847 14 MEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
.+...+.+++|+-+ +++.++.|+++.+|+++..+........+|.+.|-.++|+| ....+++++.|.+|++||.+.+
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 34566788999863 67778899999999999887777777789999999999998 5678999999999999999999
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
++...+....+ -..+.|+| ++.+++.++.|..|.+.|.++.+.... ......+..++|+.++++++.....|+|.|
T Consensus 98 k~~~~i~~~~e-ni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~--~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 98 KCTARIETKGE-NINITWSP-DGEYIAVGNKDDRITFIDARTYKIVNE--EQFKFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred cEEEEeeccCc-ceEEEEcC-CCCEEEEecCcccEEEEEecccceeeh--hcccceeeeeeecCCCCEEEEecCCceEEE
Confidence 99998875444 44678999 999999999999999999986654222 235567888999988888777777899999
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceee
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEIL 249 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 249 (335)
.... ..++++.++.|+....|+.|+|+|+ .+++|+ .|-.+.+||++..-+++.+.. .-+|..+.|+.+|++++
T Consensus 174 Lsyp---sLkpv~si~AH~snCicI~f~p~Gr-yfA~Gs--ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 174 LSYP---SLKPVQSIKAHPSNCICIEFDPDGR-YFATGS--ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred Eecc---ccccccccccCCcceEEEEECCCCc-eEeecc--ccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence 8855 4677899999999999999999996 556655 899999999998888888764 66999999999999999
Q ss_pred eeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC
Q 019847 250 SGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 302 (335)
++ ++|..|-|=++++|..+..++ +.++...++|+|...+||-++.|
T Consensus 248 Sa------SEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 248 SA------SEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cc------CccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 88 899999999999999998885 56778999999999999888754
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=205.51 Aligned_cols=285 Identities=17% Similarity=0.328 Sum_probs=229.4
Q ss_pred ccccceeeeecCCc-eE-EEecCCeEEEEEecC------------Cce----eeEEeecCCCCCceEEEEcCCCCEEEEE
Q 019847 15 EDYYSKVIDWGRNN-VL-AVALGPVLFLWKWEN------------GKV----KKLLQVPGEDDYPTSVSWSHDAKTLAVG 76 (335)
Q Consensus 15 ~~~~~~~~~~~~~~-~~-~~~~~~~i~vw~~~~------------~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 76 (335)
+...+.+.+|+++. ++ +++.|-.|+|.|++. +.. .-+.++-.|.+.|+++.|+|....|++|
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~ 190 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG 190 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence 45678889999864 33 456899999999872 110 1134556799999999999999999999
Q ss_pred ECCCcEEEEeCCCceeEeeec--ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE--eecCCCCEEEEEe
Q 019847 77 YMDSKLQLWDAETSKLVRNLE--GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC--IKAHSGEVCGLKW 152 (335)
Q Consensus 77 ~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~i~~~~~ 152 (335)
+.|++|+++|+......+.++ ....+|.++.|+| .|.+|+.|..-..+++||+++.+..... -.+|.+.|+++.+
T Consensus 191 srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY 269 (430)
T ss_pred cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEe
Confidence 999999999997654333332 2457899999999 9999999999999999999987765433 3468999999999
Q ss_pred ecCCCEEEEEeCCCeEEEEEccCCCcccceeecc-CC-CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEe
Q 019847 153 SNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFT-DH-CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI 230 (335)
Q Consensus 153 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~ 230 (335)
++.+++.++++.||.|++|| +-..+++.++. .| ...|.+..|..++++++.+| .|..+++|.+.+++++..+
T Consensus 270 s~t~~lYvTaSkDG~IklwD---GVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG---~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 270 SSTGSLYVTASKDGAIKLWD---GVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG---KDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred cCCccEEEEeccCCcEEeec---cccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC---CcceeeeeeecCCceEEEE
Confidence 99999999999999999999 54455565553 34 34689999999999888877 7999999999999999998
Q ss_pred ecCC------cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc-CCCCceeEeEEcCCCCEEEEEeCCC
Q 019847 231 DAKA------QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ-SSNSRILDLSQSPDGLTVATAGADE 303 (335)
Q Consensus 231 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg 303 (335)
.+.+ .-+...|+....+++.-. ...+.+.-||.++...+..+. +|.+.+..+.-||.+.-+++++.|-
T Consensus 344 tGAg~tgrq~~rtqAvFNhtEdyVl~pD-----Eas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTEDYVLFPD-----EASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred ecCCcccchhhhhhhhhcCccceEEccc-----cccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 7542 234566777777776542 346789999999988766554 7999999999999999999999999
Q ss_pred cEEEEecC
Q 019847 304 TIRFWEAF 311 (335)
Q Consensus 304 ~v~iw~~~ 311 (335)
.+++|--.
T Consensus 419 raRFWyrr 426 (430)
T KOG0640|consen 419 RARFWYRR 426 (430)
T ss_pred eeeeeeec
Confidence 99999644
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=200.08 Aligned_cols=251 Identities=21% Similarity=0.352 Sum_probs=212.6
Q ss_pred EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee--ecccccceeEeeecCCCCCEEEEeeCCCcEEEEe
Q 019847 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN--LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHD 129 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 129 (335)
..+.+|...+.+++|+.+|..|++|+.|+++.+|+++..+.... ..+|.+.|-.++|.|..+++|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 34567899999999999999999999999999999987765544 4578899999999999999999999999999999
Q ss_pred cccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEec
Q 019847 130 VRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
++.+++..... . .+.-.-+.|+|+|.++++++.|..|.+.|.++... .... ...-.+..++|+.++..++++.+
T Consensus 94 ~r~~k~~~~i~-~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~---~~~~-~~~~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 94 IRSGKCTARIE-T-KGENINITWSPDGEYIAVGNKDDRITFIDARTYKI---VNEE-QFKFEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred eccCcEEEEee-c-cCcceEEEEcCCCCEEEEecCcccEEEEEecccce---eehh-cccceeeeeeecCCCCEEEEecC
Confidence 99888755542 2 33334588999999999999999999999887432 2222 24456788999977776676654
Q ss_pred CCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeE
Q 019847 210 GREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLS 288 (335)
Q Consensus 210 g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 288 (335)
.|.|.|.....-+++..++.+ ....|+.|+|+|+++++| +.|-.+.+||+...-++..+..+.-+|..+.
T Consensus 168 ---lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~G------sADAlvSLWD~~ELiC~R~isRldwpVRTlS 238 (313)
T KOG1407|consen 168 ---LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATG------SADALVSLWDVDELICERCISRLDWPVRTLS 238 (313)
T ss_pred ---CceEEEEeccccccccccccCCcceEEEEECCCCceEeec------cccceeeccChhHhhhheeeccccCceEEEE
Confidence 799999999999999999865 578999999999999998 7799999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 289 QSPDGLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 289 ~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
||.||++||+|++|..|-|=++.++....
T Consensus 239 FS~dg~~lASaSEDh~IDIA~vetGd~~~ 267 (313)
T KOG1407|consen 239 FSHDGRMLASASEDHFIDIAEVETGDRVW 267 (313)
T ss_pred eccCcceeeccCccceEEeEecccCCeEE
Confidence 99999999999999998777776665543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-31 Score=224.58 Aligned_cols=249 Identities=18% Similarity=0.270 Sum_probs=189.6
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeE-------------eeecccccceeEeeecCCCCCEEEEeeCCCcE
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV-------------RNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 125 (335)
..|.....++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+|.++++|++|+.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 34555556667666666666666666664433221 13678999999999999778899999999999
Q ss_pred EEEecccCC------eeeEEeecCCCCEEEEEeecCC-CEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEec
Q 019847 126 INHDVRVSN------NVTSCIKAHSGEVCGLKWSNEG-NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWS 198 (335)
Q Consensus 126 ~~~d~~~~~------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 198 (335)
++||+.... .....+.+|...|.+++|+|++ ++|++++.|+.|++||+++. ..+..+..|...|.+++|+
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg---~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG---KAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC---eEEEEEcCCCCceEEEEEE
Confidence 999997543 2355678899999999999975 79999999999999998864 4566778899999999999
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC--cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc-eee
Q 019847 199 PHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA--QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT-KVG 275 (335)
Q Consensus 199 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~-~~~ 275 (335)
|++. ++++++ .|+.|++||+++++.+..+..+. ....+.|.+++..+++.. ...+.|+.|++||+++.. ++.
T Consensus 178 pdG~-lLatgs--~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G--~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 178 LDGS-LLCTTS--KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLG--CSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred CCCC-EEEEec--CCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEe--cCCCCCCeEEEEeCCCCCCcee
Confidence 9986 555555 89999999999999888887654 345678888887776541 112458999999998754 333
Q ss_pred cccCC-CCceeEeEEcCCCCEEEEEe-CCCcEEEEecCCCCC
Q 019847 276 ELQSS-NSRILDLSQSPDGLTVATAG-ADETIRFWEAFGPSG 315 (335)
Q Consensus 276 ~~~~~-~~~i~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~ 315 (335)
....+ ...+....|++++.+|++++ .||.|++||+..+..
T Consensus 253 ~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 253 TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence 33323 23455667999999999887 599999999987654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=231.73 Aligned_cols=293 Identities=21% Similarity=0.310 Sum_probs=229.8
Q ss_pred ccccceeeeecCC--ceEEEe--cCCeEEEEEecCC----------ceeeEEeecCCCCCceEEEEcCCCCEEEEEECCC
Q 019847 15 EDYYSKVIDWGRN--NVLAVA--LGPVLFLWKWENG----------KVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDS 80 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~--~~~~i~vw~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (335)
++..+.+++.+++ .+++++ .|+.++||+.+.- ....+.+...|.+.|+|+.|+|||++||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 3455788998886 455556 6788899997531 1223445678999999999999999999999999
Q ss_pred cEEEEeCCC------------------ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeec
Q 019847 81 KLQLWDAET------------------SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA 142 (335)
Q Consensus 81 ~i~iw~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 142 (335)
.|.||+... .+.+..+.+|...|..++|+| ++.+|++++.|++|.+||..+. .....+.+
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~ 169 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRG 169 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccc-eeeeeeec
Confidence 999998762 135677889999999999999 9999999999999999999988 66888999
Q ss_pred CCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccC---CCCCeeEEEecCCCCcEEEEecCCCC---CeE
Q 019847 143 HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD---HCGGVKALAWSPHQVNVLATGGGRED---GCI 216 (335)
Q Consensus 143 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~g~~d---~~i 216 (335)
|.+.|..+.|.|-|++||+-+.|++|++|++.+....+.+..... ....+..+.|+|||+++.+.-+ .+ ..+
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA--~n~~~~~~ 247 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA--VNGGKSTI 247 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh--ccCCccee
Confidence 999999999999999999999999999999766333222222211 2334789999999987766543 33 367
Q ss_pred EEEECCCCceEEEee-cCCcEeEEEeCCCC-----c---e-----eeeeeeeeeecCCCeEEEEECCCCceeecccC-CC
Q 019847 217 KIWNVQKGTCIHGID-AKAQICGLEWNRHH-----K---E-----ILSGHGFSASGDGNKLCLWKYPNMTKVGELQS-SN 281 (335)
Q Consensus 217 ~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~-----~---~-----~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~ 281 (335)
.|.+-.+.+.-..+- |..++.++.|+|.- + . .+ ...++++.|+.|.||.....+++..+.. ..
T Consensus 248 ~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y--~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~ 325 (942)
T KOG0973|consen 248 AIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYY--CIAAVGSQDRSLSVWNTALPRPLFVIHNLFN 325 (942)
T ss_pred EEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcce--EEEEEecCCccEEEEecCCCCchhhhhhhhc
Confidence 788876666555554 45689999998731 1 0 01 1144569999999999988888766543 45
Q ss_pred CceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 282 SRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 282 ~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
..|.+++|+|||..|+++|.||+|.+..++..
T Consensus 326 ~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 326 KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 57999999999999999999999999998864
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=221.21 Aligned_cols=246 Identities=17% Similarity=0.233 Sum_probs=184.2
Q ss_pred cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCC-CCEEEEEECCCcEEEEeCCCce--------eEeeeccccccee
Q 019847 34 LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHD-AKTLAVGYMDSKLQLWDAETSK--------LVRNLEGHHRRVA 104 (335)
Q Consensus 34 ~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~v~ 104 (335)
..+.|++|+..... ....+.+|...|.+++|+|+ +++|++|+.||.|+|||+.++. .+..+.+|...|.
T Consensus 52 ~~gvI~L~~~~r~~--~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 52 LIGAIRLENQMRKP--PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred ceeEEEeeecCCCc--eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 45678899876543 45677899999999999996 7899999999999999997642 3345778999999
Q ss_pred EeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceee
Q 019847 105 TSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHR 184 (335)
Q Consensus 105 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 184 (335)
+++|+|....+|++++.|+.|++||++++..... +. |...|.+++|+|+|++|++++.|+.|++||++++ ..+..
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~-i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg---~~i~t 204 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ-IN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ---EIASS 204 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE-Ee-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC---cEEEE
Confidence 9999994444568999999999999997765433 33 6678999999999999999999999999998874 44667
Q ss_pred ccCCCCCeeEE-----EecCCCCcEEEEecC-CCCCeEEEEECCC-CceEEEeecCCc---EeEEEeCCCCceeeeeeee
Q 019847 185 FTDHCGGVKAL-----AWSPHQVNVLATGGG-REDGCIKIWNVQK-GTCIHGIDAKAQ---ICGLEWNRHHKEILSGHGF 254 (335)
Q Consensus 185 ~~~~~~~v~~~-----~~~~~~~~~~~~~~g-~~d~~i~i~d~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 254 (335)
+.+|.+.+... .|++++.++++++.. ..++.|++||+++ ++++..+..+.. +......+++.++++|
T Consensus 205 l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG--- 281 (568)
T PTZ00420 205 FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIG--- 281 (568)
T ss_pred EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEE---
Confidence 77888765432 345788777777640 0124899999995 566666554432 2223334457777666
Q ss_pred eeecCCCeEEEEECCCCceeeccc--CCCCceeEeEEcCCC
Q 019847 255 SASGDGNKLCLWKYPNMTKVGELQ--SSNSRILDLSQSPDG 293 (335)
Q Consensus 255 ~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~ 293 (335)
..|+.|++|++..+.. ..+. .+..++.+++|.|..
T Consensus 282 ---kGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 282 ---KGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred ---ECCCeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 6799999999977643 2222 245678899999964
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-32 Score=211.63 Aligned_cols=250 Identities=22% Similarity=0.423 Sum_probs=208.8
Q ss_pred cCCCCCceEEEEcCCC-CEEEEEECCCcEEEEeCCCce----------eEeeecccccceeEeeecCCCCCEEEEeeCCC
Q 019847 55 PGEDDYPTSVSWSHDA-KTLAVGYMDSKLQLWDAETSK----------LVRNLEGHHRRVATSSWNHWNGHILTSGSKDK 123 (335)
Q Consensus 55 ~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 123 (335)
-.|.+.|+.+.+-|+. ..+|+++..+.+.|||..+.. +-..+.+|...-..++|++.....|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 3588899999999965 566777888999999986431 12267788888888999998899999999999
Q ss_pred cEEEEecccCCe------eeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEE
Q 019847 124 SIINHDVRVSNN------VTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALA 196 (335)
Q Consensus 124 ~i~~~d~~~~~~------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 196 (335)
.|++||+..... ....+.+|...|..++|++ +..+|++++.|+.+.|||+|.. ..+..+...+|.+++.|++
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEE
Confidence 999999975443 3566789999999999999 6779999999999999999974 5566777889999999999
Q ss_pred ecCCCCcEEEEecCCCCCeEEEEECCCC-ceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC---
Q 019847 197 WSPHQVNVLATGGGREDGCIKIWNVQKG-TCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM--- 271 (335)
Q Consensus 197 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~--- 271 (335)
|+|.+.+++++++ .|++|++||+|+. +++..++. ...+.++.|+|....+++. ++.|+.+.+||+..-
T Consensus 280 fnp~~~~ilAT~S--~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLAS-----Sg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 280 FNPFNEFILATGS--ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLAS-----SGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred eCCCCCceEEecc--CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEe-----cccCCcEEEEeccccccc
Confidence 9999999999988 9999999999985 45666665 4589999999999887554 478999999998642
Q ss_pred -----------ceeecccCCCCceeEeEEcCCCCE-EEEEeCCCcEEEEecCC
Q 019847 272 -----------TKVGELQSSNSRILDLSQSPDGLT-VATAGADETIRFWEAFG 312 (335)
Q Consensus 272 -----------~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~v~iw~~~~ 312 (335)
+++..-.+|...|..+.|+|+..+ +++.++|+.++||++..
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 234556789999999999998754 66788999999999884
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-30 Score=193.90 Aligned_cols=272 Identities=17% Similarity=0.219 Sum_probs=214.3
Q ss_pred cCCCCcccccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEe
Q 019847 9 DAPYLMEDYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 86 (335)
+.+..|.+ .+..+.|++ +.+++++.||.+++|++...++...+ .|..++.+++|.+ ...+++|+.||.|+.+|
T Consensus 7 ~l~npP~d-~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~---~~~~plL~c~F~d-~~~~~~G~~dg~vr~~D 81 (323)
T KOG1036|consen 7 ELENPPED-GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF---KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYD 81 (323)
T ss_pred ccCCCChh-ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe---ecCCceeeeeccC-CceEEEeccCceEEEEE
Confidence 34444444 466777775 67999999999999999988654444 4788999999987 45799999999999999
Q ss_pred CCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC
Q 019847 87 AETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN 166 (335)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 166 (335)
+.+++.. .+..|..++.++.+++ ....+++|+.|++|++||.+.... ...+ .....|.++..+ ++.|++|..|.
T Consensus 82 ln~~~~~-~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~-~~~~-d~~kkVy~~~v~--g~~LvVg~~~r 155 (323)
T KOG1036|consen 82 LNTGNED-QIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVV-VGTF-DQGKKVYCMDVS--GNRLVVGTSDR 155 (323)
T ss_pred ecCCcce-eeccCCCceEEEEeec-cCCeEEEcccCccEEEEecccccc-cccc-ccCceEEEEecc--CCEEEEeecCc
Confidence 9988754 4556999999999998 888999999999999999985332 2222 234478887764 66899999999
Q ss_pred eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC----ceEEEeecC---------
Q 019847 167 VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG----TCIHGIDAK--------- 233 (335)
Q Consensus 167 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~----~~~~~~~~~--------- 233 (335)
.+.+||+++........ -..-+-.+.++++.|++.-++++. .||.|.+=.+... +....++.|
T Consensus 156 ~v~iyDLRn~~~~~q~r-eS~lkyqtR~v~~~pn~eGy~~sS---ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~ 231 (323)
T KOG1036|consen 156 KVLIYDLRNLDEPFQRR-ESSLKYQTRCVALVPNGEGYVVSS---IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEI 231 (323)
T ss_pred eEEEEEcccccchhhhc-cccceeEEEEEEEecCCCceEEEe---ecceEEEEccCCchHHhhhceeEEeeecccCCceE
Confidence 99999999876544222 223456789999999776666644 7999988766655 222333322
Q ss_pred -CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeC
Q 019847 234 -AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA 301 (335)
Q Consensus 234 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 301 (335)
.+|++++|+|-...+++| +.||.|.+||+.+.+.+..+......|.+++|+.+|..||+++.
T Consensus 232 ~yPVNai~Fhp~~~tfaTg------GsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 232 IYPVNAIAFHPIHGTFATG------GSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEEeceeEeccccceEEec------CCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 379999999999989888 88999999999999999999888888999999999999999874
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=221.96 Aligned_cols=280 Identities=16% Similarity=0.236 Sum_probs=230.5
Q ss_pred ecCCceEEEecCCeEEEEEecCCceeeEE----------e-------------------------ecCCCCCceEEEEcC
Q 019847 24 WGRNNVLAVALGPVLFLWKWENGKVKKLL----------Q-------------------------VPGEDDYPTSVSWSH 68 (335)
Q Consensus 24 ~~~~~~~~~~~~~~i~vw~~~~~~~~~~~----------~-------------------------~~~~~~~v~~~~~~~ 68 (335)
.-++-+++++.|++|++|+++.+.....+ + .-+....+.+++.+|
T Consensus 390 lp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp 469 (1080)
T KOG1408|consen 390 LPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP 469 (1080)
T ss_pred CCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC
Confidence 34456889999999999998763211110 0 001234689999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCC--CCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCC
Q 019847 69 DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW--NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGE 146 (335)
Q Consensus 69 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 146 (335)
+|++||+|..-|+++||++...+....++.|+..|.|+.|+.. ..++|++++.|..|.+||....-.+.+.+.+|...
T Consensus 470 ~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss 549 (1080)
T KOG1408|consen 470 DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS 549 (1080)
T ss_pred CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc
Confidence 9999999999999999999999999999999999999999853 35789999999999999998888888999999999
Q ss_pred EEEEEeecCC--CEEEEEeCCCeEEEEEccCCCcccce--eeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC
Q 019847 147 VCGLKWSNEG--NLLASGGDDNVVRIWERSKMSSSKSL--HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ 222 (335)
Q Consensus 147 i~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 222 (335)
|+++.|..+| ..+++++.|+.|.+--.+........ .+.......++.++..|..++++..+ .|..|+|||++
T Consensus 550 ITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c---QDrnirif~i~ 626 (1080)
T KOG1408|consen 550 ITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC---QDRNIRIFDIE 626 (1080)
T ss_pred eeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe---cccceEEEecc
Confidence 9999998876 78999999988765433322211111 11111245688999999997666655 89999999999
Q ss_pred CCceEEEeec----CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEE
Q 019847 223 KGTCIHGIDA----KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVAT 298 (335)
Q Consensus 223 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 298 (335)
+++..+.++. .+....+...|.|.|+++. ..|.++.++|..+++++.++.+|...|+.+.|.+|-+.|++
T Consensus 627 sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atS------csdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlIS 700 (1080)
T KOG1408|consen 627 SGKQVKSFKGSRDHEGDLIKVILDPSGIYLATS------CSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLIS 700 (1080)
T ss_pred ccceeeeecccccCCCceEEEEECCCccEEEEe------ecCCceEEEEeccchhhhhhcCcchheeeeeecccchhhee
Confidence 9999999975 3568889999999999988 66999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEecCC
Q 019847 299 AGADETIRFWEAFG 312 (335)
Q Consensus 299 ~~~dg~v~iw~~~~ 312 (335)
.+.||.|.||.+..
T Consensus 701 vsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 701 VSGDGCIFVWKLPL 714 (1080)
T ss_pred ecCCceEEEEECch
Confidence 99999999999863
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-31 Score=199.45 Aligned_cols=272 Identities=17% Similarity=0.301 Sum_probs=231.0
Q ss_pred CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeC------CC-----------
Q 019847 27 NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDA------ET----------- 89 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~------~~----------- 89 (335)
+-+-+++.|.+-+||.++++.+ +.++.+|.+.|++++|++.+.++++++.|++..||.. ..
T Consensus 161 pi~gtASADhTA~iWs~Esg~C--L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLESGAC--LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred cceeecccccceeEEeeccccc--eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 3455567899999999999987 5567799999999999999999999999999999961 10
Q ss_pred -----------------------ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCC
Q 019847 90 -----------------------SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGE 146 (335)
Q Consensus 90 -----------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~ 146 (335)
..++..+.+|...|.+..|.. .++.+++++.|.+..+||++++. +...+.+|...
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge-~v~~LtGHd~E 316 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGE-VVNILTGHDSE 316 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCc-eeccccCcchh
Confidence 014456788999999999998 99999999999999999999766 47789999999
Q ss_pred EEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-c
Q 019847 147 VCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-T 225 (335)
Q Consensus 147 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~ 225 (335)
.+.++-+|..+++++++.|.+.++||.+. ....+..|++|...|++..|..+. -+++++ .|.+|++||+++. .
T Consensus 317 LtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~dd--~vVSgS--DDrTvKvWdLrNMRs 390 (481)
T KOG0300|consen 317 LTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTDD--RVVSGS--DDRTVKVWDLRNMRS 390 (481)
T ss_pred ccccccCCcceEEEEeccCceeEeccchh--hcceeeeecccccceeEEEEecCC--ceeecC--CCceEEEeeeccccC
Confidence 99999999999999999999999999984 356788899999999999999876 355554 9999999999986 4
Q ss_pred eEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee----ecccCCCCceeEeEEcCCC--CEEEEE
Q 019847 226 CIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV----GELQSSNSRILDLSQSPDG--LTVATA 299 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~----~~~~~~~~~i~~~~~~~~~--~~l~~~ 299 (335)
++.++....+++.++.+..++.++.- -++..|++||+...... ..-++|...|+|.+|..+. .-|+++
T Consensus 391 plATIRtdS~~NRvavs~g~~iIAiP------hDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftc 464 (481)
T KOG0300|consen 391 PLATIRTDSPANRVAVSKGHPIIAIP------HDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTC 464 (481)
T ss_pred cceeeecCCccceeEeecCCceEEec------cCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccc
Confidence 68888999999999999998888876 56899999998654432 2335888999999998764 348899
Q ss_pred eCCCcEEEEecCCCC
Q 019847 300 GADETIRFWEAFGPS 314 (335)
Q Consensus 300 ~~dg~v~iw~~~~~~ 314 (335)
+-|..+.=|++..+.
T Consensus 465 GFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 465 GFDRMVAGWKINTPT 479 (481)
T ss_pred cccceeeeeEecccC
Confidence 999999999988764
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-31 Score=196.62 Aligned_cols=257 Identities=17% Similarity=0.233 Sum_probs=208.8
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV 136 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 136 (335)
..+.|..+.|+|.+..|+++++||++++||+...++...++ |..++.+++|. +...+++|+.||.|+.+|+.++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~--d~~~~~~G~~dg~vr~~Dln~~~~- 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFA--DESTIVTGGLDGQVRRYDLNTGNE- 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeecc--CCceEEEeccCceEEEEEecCCcc-
Confidence 36789999999999999999999999999999887766666 89999999998 477899999999999999987663
Q ss_pred eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeE
Q 019847 137 TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCI 216 (335)
Q Consensus 137 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 216 (335)
..+..|..+|.++.+++....+++|+.|++|++||.+.. .....+. ....|.++....+ .|++.+ .|..+
T Consensus 88 -~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~---~~~~~~d-~~kkVy~~~v~g~--~LvVg~---~~r~v 157 (323)
T KOG1036|consen 88 -DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK---VVVGTFD-QGKKVYCMDVSGN--RLVVGT---SDRKV 157 (323)
T ss_pred -eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc---ccccccc-cCceEEEEeccCC--EEEEee---cCceE
Confidence 446679999999999998889999999999999998852 2233332 3347888877643 455533 79999
Q ss_pred EEEECCCCceEEEe---ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC----ceeecccCCCC-------
Q 019847 217 KIWNVQKGTCIHGI---DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM----TKVGELQSSNS------- 282 (335)
Q Consensus 217 ~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~----~~~~~~~~~~~------- 282 (335)
.+||+++....... ..+..+.++++.|++.-.+++ +-+|.|.+=.++.. +....++.|..
T Consensus 158 ~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~s------SieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~ 231 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVS------SIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEI 231 (323)
T ss_pred EEEEcccccchhhhccccceeEEEEEEEecCCCceEEE------eecceEEEEccCCchHHhhhceeEEeeecccCCceE
Confidence 99999987654432 235678999999977766655 67999998777665 33445666642
Q ss_pred --ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceecc
Q 019847 283 --RILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTSV 333 (335)
Q Consensus 283 --~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~~ 333 (335)
+|++|+|+|-...|+||+.||.|.+||+...+...++......|.+++|+.
T Consensus 232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~ 284 (323)
T KOG1036|consen 232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM 284 (323)
T ss_pred EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc
Confidence 699999999999999999999999999999998888877778888888864
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-31 Score=215.95 Aligned_cols=275 Identities=18% Similarity=0.337 Sum_probs=228.7
Q ss_pred ccccceeeeecCCc-eEEEecCCeEEEEEecCCceeeEEeecCCCCCceE-EEEcC-CCCEEEEEECCCcEEEEeCCCce
Q 019847 15 EDYYSKVIDWGRNN-VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTS-VSWSH-DAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 15 ~~~~~~~~~~~~~~-~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
++..+..++..++. +++++.|+++++|+-..++......+.+|.+.|.+ +++-+ ++..+++|+.|+.|.+|...+..
T Consensus 13 H~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~ 92 (745)
T KOG0301|consen 13 HKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE 92 (745)
T ss_pred CccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCC
Confidence 33345666666654 77788899999999888888777778888888877 88876 55679999999999999999999
Q ss_pred eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEE
Q 019847 92 LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
+...+++|...|.++.-.. ++. +++|+.|.++++|.... +...+.+|...|++++.-|++ .+++|+.|.+|++|
T Consensus 93 P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklW 166 (745)
T KOG0301|consen 93 PLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLW 166 (745)
T ss_pred chhhhhccccceeeeecCC-cCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC-cEEeccCcceeeec
Confidence 9999999999999999765 454 99999999999998643 345588999999999999987 89999999999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILS 250 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 250 (335)
.- .+.++++.+|.+.|+.+++-|++. ++.++ .||.|++|++ +|+++..+.. ..-+.++...+++..+++
T Consensus 167 k~-----~~~l~tf~gHtD~VRgL~vl~~~~-flScs---NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs 236 (745)
T KOG0301|consen 167 KG-----GTLLKTFSGHTDCVRGLAVLDDSH-FLSCS---NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVS 236 (745)
T ss_pred cC-----CchhhhhccchhheeeeEEecCCC-eEeec---CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEE
Confidence 83 356889999999999999999873 55554 7999999999 5666666654 457899997777777776
Q ss_pred eeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 251 GHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
. ++|++++||+.. ++.+.+.-....|.++.+-++|. +++|+.||.||||......
T Consensus 237 ~------gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 237 T------GEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred e------cCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecccc
Confidence 6 899999999976 67777776666899999998886 6789999999999887543
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-30 Score=217.16 Aligned_cols=229 Identities=16% Similarity=0.233 Sum_probs=174.9
Q ss_pred EECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe-------eeEEeecCCCCEE
Q 019847 76 GYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN-------VTSCIKAHSGEVC 148 (335)
Q Consensus 76 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-------~~~~~~~~~~~i~ 148 (335)
|+.++.|++|+......+..+.+|...|.+++|+|.++++|++|+.||.|++||+.+... ....+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 556889999998888888889999999999999995589999999999999999975432 2345678999999
Q ss_pred EEEeecCCCE-EEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceE
Q 019847 149 GLKWSNEGNL-LASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI 227 (335)
Q Consensus 149 ~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~ 227 (335)
+++|+|++.. |++++.|+.|++||+++... ...+. |...|.+++|+|+|..+ ++++ .|+.|++||+++++.+
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~---~~~i~-~~~~V~SlswspdG~lL-at~s--~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKR---AFQIN-MPKKLSSLKWNIKGNLL-SGTC--VGKHMHIIDPRKQEIA 202 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcE---EEEEe-cCCcEEEEEECCCCCEE-EEEe--cCCEEEEEECCCCcEE
Confidence 9999998775 57899999999999987542 33333 56789999999999754 5554 7999999999999998
Q ss_pred EEeecCCc-E-----eEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC-Cceeeccc--CCCCceeEeEEcCCCCEEEE
Q 019847 228 HGIDAKAQ-I-----CGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN-MTKVGELQ--SSNSRILDLSQSPDGLTVAT 298 (335)
Q Consensus 228 ~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~ 298 (335)
..+..+.. + ....|++++.+++++.. ....++.|++||+++ .+++..+. .+.+.+......+++.++++
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~--d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ls 280 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGF--SKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLI 280 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEc--CCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEE
Confidence 88876542 2 22345688888877521 001125899999985 55555443 23333334444556889999
Q ss_pred EeCCCcEEEEecCCC
Q 019847 299 AGADETIRFWEAFGP 313 (335)
Q Consensus 299 ~~~dg~v~iw~~~~~ 313 (335)
|+.|+.|++|++..+
T Consensus 281 GkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 281 GKGDGNCRYYQHSLG 295 (568)
T ss_pred EECCCeEEEEEccCC
Confidence 999999999999765
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-30 Score=217.13 Aligned_cols=301 Identities=20% Similarity=0.232 Sum_probs=245.5
Q ss_pred ceeeeecC---CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee
Q 019847 19 SKVIDWGR---NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN 95 (335)
Q Consensus 19 ~~~~~~~~---~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 95 (335)
++++.--+ |.++.++.+|.+.+||+++++. +++++++.+.|+++.=+|--..+|.|..+|+|.+++++.++.+.+
T Consensus 162 Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~--v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s 239 (910)
T KOG1539|consen 162 ITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKV--VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS 239 (910)
T ss_pred eeeEecchhheeeEEEeecCCcEEEEEeccCcE--EEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE
Confidence 66665333 6789999999999999999987 556678889999999999999999999999999999999999999
Q ss_pred ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe----------------------------------------
Q 019847 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN---------------------------------------- 135 (335)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---------------------------------------- 135 (335)
++...+.|++++|..+...++++|+..|.+.+||++..+.
T Consensus 240 Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 240 FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeC
Confidence 9955699999999985556777888889999999832210
Q ss_pred --------------------------------------------------------------------------------
Q 019847 136 -------------------------------------------------------------------------------- 135 (335)
Q Consensus 136 -------------------------------------------------------------------------------- 135 (335)
T Consensus 320 ~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~ 399 (910)
T KOG1539|consen 320 GDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIV 399 (910)
T ss_pred CCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcce
Confidence
Q ss_pred --------------e---------e------------EE-----eecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC
Q 019847 136 --------------V---------T------------SC-----IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 136 --------------~---------~------------~~-----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 175 (335)
+ . .. ++.....+++++.++.|++.+.|+..|.|-+|++..
T Consensus 400 ~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS 479 (910)
T KOG1539|consen 400 EFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS 479 (910)
T ss_pred eeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc
Confidence 0 0 00 001125677888889999999999999999999887
Q ss_pred CCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeee
Q 019847 176 MSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFS 255 (335)
Q Consensus 176 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (335)
+-.......-..|.++|+.++...-++.+++++ .+|.+.+||..+...+..++....+..+..+.....++.+
T Consensus 480 Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~---~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~---- 552 (910)
T KOG1539|consen 480 GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG---ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIA---- 552 (910)
T ss_pred CeeecccccCccccCceeEEEecCCCceEEEcc---CcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhh----
Confidence 544333333357999999999998886555554 7999999999999999999999999999998888877766
Q ss_pred eecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcccccccccccee
Q 019847 256 ASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 256 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~ 331 (335)
.+|-.|+++|..+.+.++.+.+|...|++++|||||++|++++.|++|++||+.++...... .-.....++++
T Consensus 553 --~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~-~vd~~~~sls~ 625 (910)
T KOG1539|consen 553 --LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL-LVDSPCTSLSF 625 (910)
T ss_pred --cCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE-ecCCcceeeEE
Confidence 67999999999999999999999999999999999999999999999999999988765432 23333444443
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=213.11 Aligned_cols=264 Identities=17% Similarity=0.300 Sum_probs=221.2
Q ss_pred EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce--eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEe
Q 019847 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK--LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHD 129 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 129 (335)
+.+..|...+..+.|-++...|++|+.|..|++|++..++ .+..+.+..++|+.+.|.+ ++..+++++.|+.+++|+
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecC-CCceEEeecCCCceeeee
Confidence 4456789999999999998999999999999999987665 6777888889999999999 999999999999999999
Q ss_pred cccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEec
Q 019847 130 VRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
+.... ....+.+|...|+++.|......+++|+.|.+|++||+..... .++.. ..+.+..++.++ ..++++.
T Consensus 248 vd~~r-~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C---~kt~l-~~S~cnDI~~~~---~~~~SgH 319 (459)
T KOG0288|consen 248 VDSLR-LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC---SKTVL-PGSQCNDIVCSI---SDVISGH 319 (459)
T ss_pred ccchh-hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe---ecccc-ccccccceEecc---eeeeecc
Confidence 98554 5777889999999999988766799999999999999887433 33322 234466666652 3556654
Q ss_pred CCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC----Ccee
Q 019847 210 GREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN----SRIL 285 (335)
Q Consensus 210 g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~----~~i~ 285 (335)
.|++|++||.+...+....+.++.++++..++++..+++. +.|..+.+.|+++.+....+.+.. ...+
T Consensus 320 --~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss------sRDdtl~viDlRt~eI~~~~sA~g~k~asDwt 391 (459)
T KOG0288|consen 320 --FDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS------SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWT 391 (459)
T ss_pred --cccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee------cCCCceeeeecccccEEEEeeccccccccccc
Confidence 9999999999999999999999999999999999999877 779999999999998877765422 2478
Q ss_pred EeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcccccc--ccccceec
Q 019847 286 DLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLA--GLVSLKTS 332 (335)
Q Consensus 286 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~--~i~~~~~~ 332 (335)
.+.|||++.|+++||.||.|+||++.+++.+........ +|.++.+.
T Consensus 392 rvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~ 440 (459)
T KOG0288|consen 392 RVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN 440 (459)
T ss_pred eeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc
Confidence 899999999999999999999999999988776543333 47777664
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=207.96 Aligned_cols=244 Identities=23% Similarity=0.443 Sum_probs=198.1
Q ss_pred ccceeeeecCC--ceEE-EecCCeEEEEEecCC--------ceeeEEeecCCCCCceEEEEcCC-CCEEEEEECCCcEEE
Q 019847 17 YYSKVIDWGRN--NVLA-VALGPVLFLWKWENG--------KVKKLLQVPGEDDYPTSVSWSHD-AKTLAVGYMDSKLQL 84 (335)
Q Consensus 17 ~~~~~~~~~~~--~~~~-~~~~~~i~vw~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i 84 (335)
..++-+...|. .+++ .+..+.|+|||.... +..+.+++.+|+..-++++|++. .-.|++++.|+.|++
T Consensus 125 gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~l 204 (422)
T KOG0264|consen 125 GEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICL 204 (422)
T ss_pred ccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEE
Confidence 33444444442 3333 457889999998642 33445578899988899999994 458899999999999
Q ss_pred EeCCCce-------eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEeccc-CCeeeEEeecCCCCEEEEEeec-C
Q 019847 85 WDAETSK-------LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV-SNNVTSCIKAHSGEVCGLKWSN-E 155 (335)
Q Consensus 85 w~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~-~ 155 (335)
||+.... ....+.+|...|..++|++.+..+|++++.|+.+.+||+++ ..+......+|.++|.|++|+| +
T Consensus 205 wdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~ 284 (422)
T KOG0264|consen 205 WDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN 284 (422)
T ss_pred EeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC
Confidence 9997432 34567899999999999999999999999999999999996 3445666788999999999999 7
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEE-------
Q 019847 156 GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIH------- 228 (335)
Q Consensus 156 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~------- 228 (335)
+..||+|+.|++|++||+|+.. +++..+.+|...|.++.|+|....++++++ .|+.+.+||+..-...+
T Consensus 285 ~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~~V~WSPh~etvLASSg--~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 285 EFILATGSADKTVALWDLRNLN--KPLHTFEGHEDEVFQVEWSPHNETVLASSG--TDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CceEEeccCCCcEEEeechhcc--cCceeccCCCcceEEEEeCCCCCceeEecc--cCCcEEEEeccccccccChhhhcc
Confidence 8899999999999999999874 478999999999999999999999999997 99999999996422111
Q ss_pred -----Eeec---CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC
Q 019847 229 -----GIDA---KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269 (335)
Q Consensus 229 -----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 269 (335)
.|.+ ...|..+.|+|+...++++ .++|+.+.||.+.
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~S-----vaeDN~LqIW~~s 404 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIAS-----VAEDNILQIWQMA 404 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEE-----ecCCceEEEeecc
Confidence 1222 3469999999999998765 3889999999975
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=195.25 Aligned_cols=258 Identities=19% Similarity=0.267 Sum_probs=200.2
Q ss_pred CCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCC-ceeE-eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEeccc
Q 019847 56 GEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAET-SKLV-RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV 132 (335)
Q Consensus 56 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 132 (335)
...+.|.+++||| ...++++|+.||+||+|+++. |..+ +....|.++|.+++|+. ++..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccC
Confidence 3567899999999 556667899999999999986 3332 44567899999999999 999999999999999999997
Q ss_pred CCeeeEEeecCCCCEEEEEeecCCC--EEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC
Q 019847 133 SNNVTSCIKAHSGEVCGLKWSNEGN--LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210 (335)
Q Consensus 133 ~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 210 (335)
++ ......|.++|..+.|-+... .|++|+.|++|+.||.|... ++.++. ..+.+.++..-.. +++.+.
T Consensus 104 ~Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~---pv~t~~-LPeRvYa~Dv~~p---m~vVat- 173 (347)
T KOG0647|consen 104 GQ--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN---PVATLQ-LPERVYAADVLYP---MAVVAT- 173 (347)
T ss_pred CC--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC---eeeeee-ccceeeehhccCc---eeEEEe-
Confidence 74 455678999999999988554 89999999999999988643 344433 3456777665432 444433
Q ss_pred CCCCeEEEEECCCCceEE-Ee--ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC--ceeecccCCCC---
Q 019847 211 REDGCIKIWNVQKGTCIH-GI--DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM--TKVGELQSSNS--- 282 (335)
Q Consensus 211 ~~d~~i~i~d~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~--~~~~~~~~~~~--- 282 (335)
.++.|.+|+++++.... .+ +..-.+.+++..++....+.| +-+|.+.|..+..+ +.-.+++.|..
T Consensus 174 -a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alG------siEGrv~iq~id~~~~~~nFtFkCHR~~~~ 246 (347)
T KOG0647|consen 174 -AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALG------SIEGRVAIQYIDDPNPKDNFTFKCHRSTNS 246 (347)
T ss_pred -cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEee------eecceEEEEecCCCCccCceeEEEeccCCC
Confidence 69999999998764432 22 234568889888888877776 66999999988876 44445666652
Q ss_pred ------ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcccccccccccee
Q 019847 283 ------RILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 283 ------~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~ 331 (335)
.|++|+|+|....|+|+|.||+..+||-+..........|...|..-.|
T Consensus 247 ~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~f 301 (347)
T KOG0647|consen 247 VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSF 301 (347)
T ss_pred CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEe
Confidence 4788999999999999999999999999887776666666666654443
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=204.22 Aligned_cols=283 Identities=20% Similarity=0.318 Sum_probs=231.9
Q ss_pred CCcccccceeeeecCC--ceEEEecCCeEEEEEecCCcee----eE----------Eee--cCCCCCceEEEEcCCCCEE
Q 019847 12 YLMEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVK----KL----------LQV--PGEDDYPTSVSWSHDAKTL 73 (335)
Q Consensus 12 ~~~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~----~~----------~~~--~~~~~~v~~~~~~~~~~~l 73 (335)
...+...+.++..+++ +.+.++.+++|.-|++.+++.. +. .+. .+|...+.+++.+|||+||
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl 217 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL 217 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE
Confidence 3456778889999885 7899999999999999887633 11 111 2788899999999999999
Q ss_pred EEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEee
Q 019847 74 AVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWS 153 (335)
Q Consensus 74 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~ 153 (335)
|+|+.|..|.||+.++.+.++.+++|.+.|.+++|-. ..+.+++++.|+.+++|+++... .+.++.+|...|..+...
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s-~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLS-YVETLYGHQDGVLGIDAL 295 (479)
T ss_pred EecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhH-HHHHHhCCccceeeechh
Confidence 9999999999999999999999999999999999998 88899999999999999998544 577788999999999988
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC
Q 019847 154 NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK 233 (335)
Q Consensus 154 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~ 233 (335)
.-++.+-+|+.|+++++|++.. .....+.++.+.+-|++|-.+. -+++|+ .+|.|.+|++.+.+++.+....
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~e----esqlifrg~~~sidcv~~In~~--HfvsGS--dnG~IaLWs~~KKkplf~~~~A 367 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIPE----ESQLIFRGGEGSIDCVAFINDE--HFVSGS--DNGSIALWSLLKKKPLFTSRLA 367 (479)
T ss_pred cccceEEeccccceeEEEeccc----cceeeeeCCCCCeeeEEEeccc--ceeecc--CCceEEEeeecccCceeEeecc
Confidence 8888888888999999999843 2234456788899999998775 455655 9999999999999988776521
Q ss_pred -----C--------cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC----ceeecccCCCCceeEeEEcCCCCEE
Q 019847 234 -----A--------QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM----TKVGELQSSNSRILDLSQSPDGLTV 296 (335)
Q Consensus 234 -----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l 296 (335)
. -+++++..|....+++| +.+|.|++|-+..+ +++..+. -.+-|++++|+++|+.+
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asG------S~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~i 440 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASG------SWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRI 440 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEec------CCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEE
Confidence 1 47888999999988888 77999999998776 4455554 56779999999999966
Q ss_pred EEE-eCCCcEEEEecC
Q 019847 297 ATA-GADETIRFWEAF 311 (335)
Q Consensus 297 ~~~-~~dg~v~iw~~~ 311 (335)
++| +....+-=|-..
T Consensus 441 vagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 441 VAGIGKEHRLGRWWCL 456 (479)
T ss_pred EEecccccccceeeEe
Confidence 555 566666555443
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-31 Score=221.02 Aligned_cols=290 Identities=20% Similarity=0.344 Sum_probs=227.9
Q ss_pred cccceeeeecCC-ceEEEecCCeEEEEEecCCceeeE--EeecC---CCCCceEEEEcC-CCCEEEEEECCCcEEEEeCC
Q 019847 16 DYYSKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKL--LQVPG---EDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAE 88 (335)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~--~~~~~---~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~ 88 (335)
+...++|+.+++ .-++.++...+.||.++....... ..... -...+..+.|.. +.++||+++..|.|.+||+.
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 344566777764 233444456778887765432221 11111 112355677875 57899999999999999998
Q ss_pred C---ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeC
Q 019847 89 T---SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGD 164 (335)
Q Consensus 89 ~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 164 (335)
. .+.+..|..|+..++++.|++...++|++|+.||.|++||++.... ...+.+....|+.+.|+| .+..|+++..
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-KSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-cccccccchhhhceeeccCCCceEEEecC
Confidence 7 5667788999999999999999999999999999999999997665 555667888999999999 7889999999
Q ss_pred CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc--eEEEeecCCcEeEEEeC
Q 019847 165 DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT--CIHGIDAKAQICGLEWN 242 (335)
Q Consensus 165 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~ 242 (335)
.|.+++||+|.+. +....+..|.++|.|+.|+|++ .++++|+ .|+.|+|||+.+.+ .+.++....++..+.|-
T Consensus 198 sG~lqlWDlRqp~--r~~~k~~AH~GpV~c~nwhPnr-~~lATGG--RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWR 272 (839)
T KOG0269|consen 198 SGYLQLWDLRQPD--RCEKKLTAHNGPVLCLNWHPNR-EWLATGG--RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWR 272 (839)
T ss_pred CceEEEeeccCch--hHHHHhhcccCceEEEeecCCC-ceeeecC--CCccEEEEeccCCCccceeEEeecceeeeeeec
Confidence 9999999999864 4567788999999999999966 6888886 99999999998654 46677778899999999
Q ss_pred CCCceeeeeeeeeeecCCCeEEEEECCCC-ceeecccCCCCceeEeEEcC-CCCEEEEEeCCCcEEEEecCCCC
Q 019847 243 RHHKEILSGHGFSASGDGNKLCLWKYPNM-TKVGELQSSNSRILDLSQSP-DGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
|...+.++.+ +...|-.|+|||++.. -+..++..|...++.++|.. |...|.+++.||.|..-.+++..
T Consensus 273 P~~~~hLAtc---smv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 273 PARSYHLATC---SMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred cCccchhhhh---hccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 9988765542 2256899999999764 45677889999999999976 45678899999998776665543
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.5e-30 Score=188.75 Aligned_cols=268 Identities=18% Similarity=0.289 Sum_probs=221.7
Q ss_pred EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecc
Q 019847 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR 131 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 131 (335)
+.+.+|+.+++.+.++.+|.+|++++.|.+..+|-..+|+.+.++.+|.+.|+++.... +.+.+++|+.|.++++||++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcC
Confidence 45679999999999999999999999999999999889999999999999999999988 89999999999999999999
Q ss_pred cCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC-----CeEEEEEccCCC----cccceeeccCCCCCeeEEEecCCCC
Q 019847 132 VSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD-----NVVRIWERSKMS----SSKSLHRFTDHCGGVKALAWSPHQV 202 (335)
Q Consensus 132 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~ 202 (335)
+++++... ....+|..+.|+++|++++....+ +.|.++|++... ...++..+..+.+.++.+.|.|-++
T Consensus 83 tGk~la~~--k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 83 TGKQLATW--KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred CCcEEEEe--ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 88875543 367889999999999988877643 579999998544 3445667777889999999999998
Q ss_pred cEEEEecCCCCCeEEEEECCCCceEEEe-e-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC
Q 019847 203 NVLATGGGREDGCIKIWNVQKGTCIHGI-D-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 203 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 280 (335)
.+++ |.+||.|..||+++|+.+... + +...|+.++++++..+++++ +.|.+-++||+.+.+.++++..
T Consensus 161 ~ii~---Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~------s~Dttakl~D~~tl~v~Kty~t- 230 (327)
T KOG0643|consen 161 TIIA---GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITG------SKDTTAKLVDVRTLEVLKTYTT- 230 (327)
T ss_pred EEEE---ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEec------ccCccceeeeccceeeEEEeee-
Confidence 6666 338999999999998665443 2 45689999999999999988 7899999999999999988864
Q ss_pred CCceeEeEEcCCCCEEEEEeCCCc--------------EEEEecCCCCCCCCccccccccccceec
Q 019847 281 NSRILDLSQSPDGLTVATAGADET--------------IRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 281 ~~~i~~~~~~~~~~~l~~~~~dg~--------------v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
..+|++.+++|....++.|+.... -++|++--.++.....+|.++|.++.+.
T Consensus 231 e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh 296 (327)
T KOG0643|consen 231 ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH 296 (327)
T ss_pred cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC
Confidence 457999999997777766653221 2344444444455567888888888764
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-30 Score=202.21 Aligned_cols=282 Identities=18% Similarity=0.272 Sum_probs=223.1
Q ss_pred CeEEEEEecCCceeeEEeecCC-CCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCceeEeeecccccceeEeeecCCCC
Q 019847 36 PVLFLWKWENGKVKKLLQVPGE-DDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNG 113 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 113 (335)
.++.+||+++|...- ++.+. ...-.++..- .+++++++. ....+.+|.+...........-.+++.+++-+| .|
T Consensus 18 ~~~~~~dl~TGt~~~--~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n-~G 93 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLL--QYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSN-LG 93 (476)
T ss_pred cceeEEecCCCceeE--EecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCC-Cc
Confidence 469999999998643 33332 1111111111 345676665 455899999877665554445678899999999 99
Q ss_pred CEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC------CCcccceeeccC
Q 019847 114 HILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK------MSSSKSLHRFTD 187 (335)
Q Consensus 114 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~ 187 (335)
.+|+.|+..|.|++|.+.++.. +..+.+|-..|+++.|+.|+.+|++|+.||.|.+|++.. ....+++..+..
T Consensus 94 ~~l~ag~i~g~lYlWelssG~L-L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~ 172 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELSSGIL-LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD 172 (476)
T ss_pred eEEEeecccCcEEEEEeccccH-HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence 9999999999999999997764 556789999999999999999999999999999998643 124567888999
Q ss_pred CCCCeeEEEecCCC--CcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEE
Q 019847 188 HCGGVKALAWSPHQ--VNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265 (335)
Q Consensus 188 ~~~~v~~~~~~~~~--~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 265 (335)
|.-+|+.+...+.+ .++++ ++ .|.++++||+..+..+.++..+..+.+++.+|.+..+++| +.+|.|.+
T Consensus 173 HtlsITDl~ig~Gg~~~rl~T-aS--~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiG------t~~G~I~~ 243 (476)
T KOG0646|consen 173 HTLSITDLQIGSGGTNARLYT-AS--EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIG------TEEGKIFQ 243 (476)
T ss_pred CcceeEEEEecCCCccceEEE-ec--CCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEec------CCcceEEe
Confidence 99999999887653 34444 44 8999999999999999999999999999999999999888 78999999
Q ss_pred EECCCCc----------------eeecccCCCC--ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccc
Q 019847 266 WKYPNMT----------------KVGELQSSNS--RILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLV 327 (335)
Q Consensus 266 ~d~~~~~----------------~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~ 327 (335)
.++.+.. .+..+.+|.+ .|+|++++-||..|++|+.||.|.|||+...+.........+.|.
T Consensus 244 ~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVt 323 (476)
T KOG0646|consen 244 NLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVT 323 (476)
T ss_pred eehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccc
Confidence 8875422 3445678888 999999999999999999999999999998876665544555565
Q ss_pred ccee
Q 019847 328 SLKT 331 (335)
Q Consensus 328 ~~~~ 331 (335)
.+.+
T Consensus 324 nL~i 327 (476)
T KOG0646|consen 324 NLQI 327 (476)
T ss_pred eeEe
Confidence 5554
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=203.95 Aligned_cols=261 Identities=14% Similarity=0.303 Sum_probs=218.9
Q ss_pred eecCCCCCceEEEEcCCC-CEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecc
Q 019847 53 QVPGEDDYPTSVSWSHDA-KTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR 131 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 131 (335)
.+.+|.+.|.|++=+|.. ..+++|+.||.|++||+.+.++...++.|.+.|..+++. ...+++++.|.+|+.|-++
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~---~~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVT---QTSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEec---ccceEEecCCcceeeeecc
Confidence 457999999999999976 789999999999999999999999999999999999995 3788999999999999987
Q ss_pred cCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCC
Q 019847 132 VSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGR 211 (335)
Q Consensus 132 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 211 (335)
.. +...+. ....+..+.-+..+..+++++. .|.|||.+. ..+++.+.-....|.++.|+|....++++++
T Consensus 138 ~~--p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R---~~Pv~smswG~Dti~svkfNpvETsILas~~-- 207 (433)
T KOG0268|consen 138 GP--PLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQR---DNPVSSMSWGADSISSVKFNPVETSILASCA-- 207 (433)
T ss_pred CC--cceeee-ccccccccccccccccccccCc--eeeeccccc---CCccceeecCCCceeEEecCCCcchheeeec--
Confidence 42 344333 3455677776777788999875 599999765 3456666666778999999999999999987
Q ss_pred CCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC-ceeecccCCCCceeEeEEc
Q 019847 212 EDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM-TKVGELQSSNSRILDLSQS 290 (335)
Q Consensus 212 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~ 290 (335)
.|+.|.+||++++.+++.+...-.-+.++|+|.+-.+.++ .+|..++.||++.. +++....+|.+.|.++.||
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a------~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAA------NEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred cCCceEEEecccCCccceeeeeccccceecCccccceeec------cccccceehhhhhhcccchhhcccceeEEEeccC
Confidence 8999999999999999999888888999999966555555 89999999999874 5677788999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCCCc-cccccccccceec
Q 019847 291 PDGLTVATAGADETIRFWEAFGPSGDEDS-VSHLAGLVSLKTS 332 (335)
Q Consensus 291 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-~~~~~~i~~~~~~ 332 (335)
|.|+-+++||.|.+|+||....+...... ...+..|.++++|
T Consensus 282 ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S 324 (433)
T KOG0268|consen 282 PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYS 324 (433)
T ss_pred CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEe
Confidence 99999999999999999999887655433 2445556666554
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-28 Score=198.34 Aligned_cols=272 Identities=14% Similarity=0.179 Sum_probs=202.4
Q ss_pred eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEE-EEEECCCcEEEEeCCCceeEeeecccccceeEee
Q 019847 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTL-AVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSS 107 (335)
Q Consensus 29 ~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 107 (335)
+++.+.|+.+++||..+++....+. .+ ..+.+++|+|+++.+ ++++.++.|++||..+++....+..+. .+..+.
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~--~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~ 79 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFP--VG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFA 79 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEE--CC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEE
Confidence 5566789999999999888655443 33 346789999999977 566778999999999998877776543 356789
Q ss_pred ecCCCCCEEE-EeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC-eEEEEEccCCCcccceeec
Q 019847 108 WNHWNGHILT-SGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN-VVRIWERSKMSSSKSLHRF 185 (335)
Q Consensus 108 ~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~ 185 (335)
|+| +++.++ ++..++.+++||+++... ...+. +...+.+++|+|+++++++++.++ .+.+||.++.. .....
T Consensus 80 ~~~-~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~---~~~~~ 153 (300)
T TIGR03866 80 LHP-NGKILYIANEDDNLVTVIDIETRKV-LAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE---IVDNV 153 (300)
T ss_pred ECC-CCCEEEEEcCCCCeEEEEECCCCeE-EeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe---EEEEE
Confidence 999 777665 456689999999986544 33332 234568899999999999988775 46778976532 22222
Q ss_pred cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC--------cEeEEEeCCCCceeeeeeeeeee
Q 019847 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA--------QICGLEWNRHHKEILSGHGFSAS 257 (335)
Q Consensus 186 ~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 257 (335)
. ....+..++|+|++..+++++. .++.|++||+++++.+..+.... ....+.|+|+++.++.+.
T Consensus 154 ~-~~~~~~~~~~s~dg~~l~~~~~--~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~----- 225 (300)
T TIGR03866 154 L-VDQRPRFAEFTADGKELWVSSE--IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL----- 225 (300)
T ss_pred E-cCCCccEEEECCCCCEEEEEcC--CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc-----
Confidence 2 2234578999999987777654 68999999999998877664221 235688999999865432
Q ss_pred cCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEE-eCCCcEEEEecCCCCCCCCc
Q 019847 258 GDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATA-GADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 258 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~ 319 (335)
+.++.+.+||..+++.+..+. +...+.+++|+|+|++|+++ +.+|.|.+||+.+.+.....
T Consensus 226 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 226 GPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred CCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 446789999999888776553 34568999999999999886 46899999999987765544
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=219.86 Aligned_cols=267 Identities=19% Similarity=0.328 Sum_probs=217.9
Q ss_pred CCCCceEEEEcCCCCEEEEEE--CCCcEEEEeCCC------------ceeEeeecccccceeEeeecCCCCCEEEEeeCC
Q 019847 57 EDDYPTSVSWSHDAKTLAVGY--MDSKLQLWDAET------------SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~--~dg~i~iw~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 122 (335)
++..|.+++.+|++..+++|+ .||.++||+.+. .+.+.....|.+.|.|+.|+| ++.+||+|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~-dG~~lAsGSDD 90 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP-DGSYLASGSDD 90 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC-CCCeEeeccCc
Confidence 455689999999999999999 899999998642 234556678999999999999 99999999999
Q ss_pred CcEEEEeccc------C-----------CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeec
Q 019847 123 KSIINHDVRV------S-----------NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF 185 (335)
Q Consensus 123 g~i~~~d~~~------~-----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 185 (335)
+.|.+|+... . -.....+.+|...|..++|+|++.+|++++.|++|.+|+.++. +.+..+
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF---~~~~vl 167 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF---ELLKVL 167 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc---eeeeee
Confidence 9999999872 0 0245678899999999999999999999999999999997764 668889
Q ss_pred cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-------CCcEeEEEeCCCCceeeeeeeeeeec
Q 019847 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-------KAQICGLEWNRHHKEILSGHGFSASG 258 (335)
Q Consensus 186 ~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (335)
.+|.+.|..+.|.|-|+++.+-+ .|++|++|++.+....+.+.. ......+.|+|+|+++++...+ .+
T Consensus 168 ~~H~s~VKGvs~DP~Gky~ASqs---dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~--n~ 242 (942)
T KOG0973|consen 168 RGHQSLVKGVSWDPIGKYFASQS---DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV--NG 242 (942)
T ss_pred ecccccccceEECCccCeeeeec---CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc--cC
Confidence 99999999999999997555544 799999999887767666643 2357889999999999998543 35
Q ss_pred CCCeEEEEECCCCceeecccCCCCceeEeEEcCC-----CC------------EEEEEeCCCcEEEEecCCCCCCCCccc
Q 019847 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPD-----GL------------TVATAGADETIRFWEAFGPSGDEDSVS 321 (335)
Q Consensus 259 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-----~~------------~l~~~~~dg~v~iw~~~~~~~~~~~~~ 321 (335)
....+.|.+-.+.+.-..+-+|..+++++.|+|. .. .+|+|+.|+.|.||....+++......
T Consensus 243 ~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~ 322 (942)
T KOG0973|consen 243 GKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN 322 (942)
T ss_pred CcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhh
Confidence 5678999998888888899999999999999981 11 678999999999999976665443321
Q ss_pred -cccccccceec
Q 019847 322 -HLAGLVSLKTS 332 (335)
Q Consensus 322 -~~~~i~~~~~~ 332 (335)
....|..++++
T Consensus 323 lf~~SI~DmsWs 334 (942)
T KOG0973|consen 323 LFNKSIVDMSWS 334 (942)
T ss_pred hhcCceeeeeEc
Confidence 22345555543
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-30 Score=215.54 Aligned_cols=243 Identities=16% Similarity=0.263 Sum_probs=195.7
Q ss_pred cccccceeeeecCC--ceEEEecCCeEEEEEecC--------------------------------Cc------------
Q 019847 14 MEDYYSKVIDWGRN--NVLAVALGPVLFLWKWEN--------------------------------GK------------ 47 (335)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~--------------------------------~~------------ 47 (335)
.+...|-++.|+++ .++++|.|+.|+||.+.. ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 46677888999984 566678999999999765 00
Q ss_pred --------------eeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCC
Q 019847 48 --------------VKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNG 113 (335)
Q Consensus 48 --------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 113 (335)
..+...+.||.+.|..+.|+.++ +|++++.|.+|++|++...++++.|. |..-|+|++|+|.|.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 01123345899999999999765 89999999999999999999999998 999999999999999
Q ss_pred CEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeec------cC
Q 019847 114 HILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF------TD 187 (335)
Q Consensus 114 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~ 187 (335)
++|++|+-||.+++|++...+ +.....-..-|++++|.|+|+..++|+.+|.+++|+.+........+.. ..
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~ 500 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ 500 (712)
T ss_pred CcEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc
Confidence 999999999999999997443 3334455688999999999999999999999999998764332211111 11
Q ss_pred CCCCeeEEEecCCCCc-EEEEecCCCCCeEEEEECCCCceEEEeecC---CcEeEEEeCCCCceeeeeeeeeeecCCCeE
Q 019847 188 HCGGVKALAWSPHQVN-VLATGGGREDGCIKIWNVQKGTCIHGIDAK---AQICGLEWNRHHKEILSGHGFSASGDGNKL 263 (335)
Q Consensus 188 ~~~~v~~~~~~~~~~~-~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (335)
|. .|+.+.|.|.... ++++. .|..|||||.++..++..+++. ..-....|+.+|++++++ ++|..|
T Consensus 501 ~~-rITG~Q~~p~~~~~vLVTS---nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~------seDs~V 570 (712)
T KOG0283|consen 501 GK-RITGLQFFPGDPDEVLVTS---NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA------SEDSWV 570 (712)
T ss_pred Cc-eeeeeEecCCCCCeEEEec---CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe------ecCceE
Confidence 33 7999999987664 66655 6999999999988888888753 345678899999999988 789999
Q ss_pred EEEECCC
Q 019847 264 CLWKYPN 270 (335)
Q Consensus 264 ~i~d~~~ 270 (335)
++|+...
T Consensus 571 YiW~~~~ 577 (712)
T KOG0283|consen 571 YIWKNDS 577 (712)
T ss_pred EEEeCCC
Confidence 9999744
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=199.63 Aligned_cols=276 Identities=11% Similarity=0.190 Sum_probs=214.6
Q ss_pred cccceeeeecCC---ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 16 DYYSKVIDWGRN---NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 16 ~~~~~~~~~~~~---~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
.--+.|++-+++ .+++++.||.|++||+...++ ...+..|.+.|..+++.. ..+++++.|.+|+.|.++- .+
T Consensus 66 rdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~--~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p 140 (433)
T KOG0268|consen 66 RDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC--IRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PP 140 (433)
T ss_pred ccccchhhcCcchhhhhhccccCceEEEEehhhhhh--hheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Cc
Confidence 344677887875 477888999999999998776 445668999999999976 6788999999999999864 45
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIW 171 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iw 171 (335)
+..+. ....+..+.-+. .++.+++++. .|-+||.+...+ ++.+.-....|.++.|+| ....|+++..|+.|.+|
T Consensus 141 ~~til-g~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~P-v~smswG~Dti~svkfNpvETsILas~~sDrsIvLy 215 (433)
T KOG0268|consen 141 LHTIL-GKSVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNP-VSSMSWGADSISSVKFNPVETSILASCASDRSIVLY 215 (433)
T ss_pred ceeee-cccccccccccc-ccccccccCc--eeeecccccCCc-cceeecCCCceeEEecCCCcchheeeeccCCceEEE
Confidence 55554 345677777766 7788888876 489999985554 555666677899999999 55678888899999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc-eEEEee-cCCcEeEEEeCCCCceee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT-CIHGID-AKAQICGLEWNRHHKEIL 249 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~ 249 (335)
|++.....+.+. ....-+.++|+|.+ ..+++++ +|..++.||++..+ ++..+. +.+.+.++.|+|.|+.++
T Consensus 216 D~R~~~Pl~KVi----~~mRTN~IswnPea-fnF~~a~--ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv 288 (433)
T KOG0268|consen 216 DLRQASPLKKVI----LTMRTNTICWNPEA-FNFVAAN--EDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV 288 (433)
T ss_pred ecccCCccceee----eeccccceecCccc-cceeecc--ccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc
Confidence 999865543332 22345689999954 6677766 99999999998753 344444 345799999999999999
Q ss_pred eeeeeeeecCCCeEEEEECCCCceeeccc-CCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 250 SGHGFSASGDGNKLCLWKYPNMTKVGELQ-SSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
+| +-|.+|+||.++.+.....+. .-...|.++.||.|.+++++||.|+.|++|.....+
T Consensus 289 sg------syDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 289 SG------SYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred cc------cccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 98 669999999998766543332 123469999999999999999999999999876543
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=213.31 Aligned_cols=250 Identities=19% Similarity=0.302 Sum_probs=212.1
Q ss_pred CCCCEEEEEECCCcEEEEeCCCce------eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC-eeeEEe
Q 019847 68 HDAKTLAVGYMDSKLQLWDAETSK------LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN-NVTSCI 140 (335)
Q Consensus 68 ~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~ 140 (335)
|.++||++|+.||.|++|+..... ....++.|...|..+.... +++.|++++.|-+|++|+..... ....++
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~~c~sti 113 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKDNTFCMSTI 113 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccCcchhHhhh
Confidence 467789999999999999986432 3667888999999999988 88899999999999999998664 456778
Q ss_pred ecCCCCEEEEEe-ecCCCEEEEEeCCCeEEEEEccCCCc-------ccceeecc-CCCCCeeEEEecCCCCcEEEEecCC
Q 019847 141 KAHSGEVCGLKW-SNEGNLLASGGDDNVVRIWERSKMSS-------SKSLHRFT-DHCGGVKALAWSPHQVNVLATGGGR 211 (335)
Q Consensus 141 ~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~g~ 211 (335)
..|...|.|+++ .++...+|+|+.|+.|.+||++.+.. ......+. ++..+|++++.++.+ .++++|+
T Consensus 114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGg-- 190 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGG-- 190 (735)
T ss_pred hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecC--
Confidence 899999999999 77888999999999999999986522 11222233 788899999999998 5777776
Q ss_pred CCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEc
Q 019847 212 EDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQS 290 (335)
Q Consensus 212 ~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 290 (335)
..+.+++||.++.+.+..+.+| ..|..+..+++|..++++ +.||+|++||+...+++.++..|...|.++..+
T Consensus 191 tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~------sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~ 264 (735)
T KOG0308|consen 191 TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSA------SSDGTIRLWDLGQQRCLATYIVHKEGVWALQSS 264 (735)
T ss_pred cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeec------CCCceEEeeeccccceeeeEEeccCceEEEeeC
Confidence 8999999999999999888865 479999999999999988 789999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccc
Q 019847 291 PDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLV 327 (335)
Q Consensus 291 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~ 327 (335)
|+-..+.+|+.||.|..=|+.+...........+.|.
T Consensus 265 ~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~ 301 (735)
T KOG0308|consen 265 PSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVL 301 (735)
T ss_pred CCcceEEecCCCCcEEecccCCchhheEeecCCCchh
Confidence 9999999999999999999998644433334444443
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=213.34 Aligned_cols=273 Identities=17% Similarity=0.353 Sum_probs=228.4
Q ss_pred ceEEEecCCeEEEEEecCCcee----eEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc--eeEeeeccccc
Q 019847 28 NVLAVALGPVLFLWKWENGKVK----KLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS--KLVRNLEGHHR 101 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~ 101 (335)
.+++++.||.|++|++...... ...+++.|.+.|..+....+++.|++++.|-+|++|+...+ -+...+..|..
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~D 118 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKD 118 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccc
Confidence 4899999999999998754432 25567889999999999999999999999999999999877 56778889999
Q ss_pred ceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe---------eeEEee-cCCCCEEEEEeecCCCEEEEEeCCCeEEEE
Q 019847 102 RVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN---------VTSCIK-AHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 102 ~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---------~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
-|.|+++...+..++++|+-|+.|.+||++++.. ....+. ++..+|++++.++.+..+++|+.++.+++|
T Consensus 119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~w 198 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLW 198 (735)
T ss_pred hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEe
Confidence 9999999444999999999999999999986522 122233 788899999999999999999999999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILS 250 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (335)
|.++ .+.+..+.+|...|..+..++||..++.++ .||+|++||+...+++.++..+ ..+.++..+|+-..+++
T Consensus 199 Dprt---~~kimkLrGHTdNVr~ll~~dDGt~~ls~s---SDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYs 272 (735)
T KOG0308|consen 199 DPRT---CKKIMKLRGHTDNVRVLLVNDDGTRLLSAS---SDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYS 272 (735)
T ss_pred cccc---ccceeeeeccccceEEEEEcCCCCeEeecC---CCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEe
Confidence 9776 455677779999999999999998888766 6999999999999999998754 46899999999988888
Q ss_pred eeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 251 GHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
| +.|+.|..=|+++......+-....+|..+..+...+-+-+++.|+.|+-|....
T Consensus 273 G------~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 273 G------GRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred c------CCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 7 7899999999988654444444556677777776555557788899999997654
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=194.65 Aligned_cols=267 Identities=19% Similarity=0.328 Sum_probs=214.6
Q ss_pred EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC------------c------eeEeeecccccceeEeeecCCCC
Q 019847 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET------------S------KLVRNLEGHHRRVATSSWNHWNG 113 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~ 113 (335)
..+..|+.++.+.+|+|||.++|+|+.|..|+|.|++. + -.++++..|..+|+++.|+| ..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RE 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hh
Confidence 34567999999999999999999999999999999861 1 24667788999999999999 99
Q ss_pred CEEEEeeCCCcEEEEecccCCe--eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCC
Q 019847 114 HILTSGSKDKSIINHDVRVSNN--VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGG 191 (335)
Q Consensus 114 ~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 191 (335)
.+|++|+.|++|++||+..... ..+.+ ....+|.++.|+|.|.+|++|..-..+++||+++.+....-..-..|.+.
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 9999999999999999864321 11212 24568999999999999999999999999999885543333444578999
Q ss_pred eeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec---CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEEC
Q 019847 192 VKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA---KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268 (335)
Q Consensus 192 v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 268 (335)
|+++.+++.+. +.++++ .||.|++||--+++++.++.. +..|++..|..++++++++ +.|..+++|.+
T Consensus 264 i~~V~Ys~t~~-lYvTaS--kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS------G~DS~vkLWEi 334 (430)
T KOG0640|consen 264 ITQVRYSSTGS-LYVTAS--KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS------GKDSTVKLWEI 334 (430)
T ss_pred eeEEEecCCcc-EEEEec--cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec------CCcceeeeeee
Confidence 99999999995 777776 999999999999999988863 4589999999999999987 88999999999
Q ss_pred CCCceeecccCCC--C---ceeEeEEcCCCCEEEEEeC-CCcEEEEecCCCCCCC-Cccccccccccc
Q 019847 269 PNMTKVGELQSSN--S---RILDLSQSPDGLTVATAGA-DETIRFWEAFGPSGDE-DSVSHLAGLVSL 329 (335)
Q Consensus 269 ~~~~~~~~~~~~~--~---~i~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~-~~~~~~~~i~~~ 329 (335)
.+++.+.++.+-. + --+...|+....|++.-.+ .+.+.-||.++..... -..+|.+.+.-+
T Consensus 335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i 402 (430)
T KOG0640|consen 335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI 402 (430)
T ss_pred cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEE
Confidence 9999998876531 1 1244567777777776653 4678899998875443 345777766544
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=214.03 Aligned_cols=252 Identities=25% Similarity=0.432 Sum_probs=216.7
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee-ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN-LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN 135 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 135 (335)
+...+.+..|. ..++++++.+.+|++||..++..+.. +.+|.+.|.++++.. .++++++|+.|.++++||..++.+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcE
Confidence 56677888887 66899999999999999999998888 999999999999976 799999999999999999886665
Q ss_pred eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe
Q 019847 136 VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215 (335)
Q Consensus 136 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 215 (335)
...+.+|...+.++...+ .++++|+.|.+|++|++.+ ...+..+.+|.++|.++..+ + .++++++ .|++
T Consensus 284 -~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n---~~~l~l~~~h~~~V~~v~~~--~-~~lvsgs--~d~~ 352 (537)
T KOG0274|consen 284 -THSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTN---GACLNLLRGHTGPVNCVQLD--E-PLLVSGS--YDGT 352 (537)
T ss_pred -EEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccC---cceEEEeccccccEEEEEec--C-CEEEEEe--cCce
Confidence 777889999999988654 5788899999999999886 45678888899999999998 3 3666655 8999
Q ss_pred EEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC-ceeecccCCCCceeEeEEcCCC
Q 019847 216 IKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM-TKVGELQSSNSRILDLSQSPDG 293 (335)
Q Consensus 216 i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~ 293 (335)
|++||+.+++++..+..+ ..|.++.+.+. ..+++| +.|+.|++||+++. +++.++.+|.+-+..+.+ .+
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sg------s~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~ 423 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSG------SLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RD 423 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEee------eeccceEeecCCchhhhhhhhcCCccccccccc--cc
Confidence 999999999999999875 47999987776 667776 67999999999999 999999999998876665 56
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCCCccc-ccccccccee
Q 019847 294 LTVATAGADETIRFWEAFGPSGDEDSVS-HLAGLVSLKT 331 (335)
Q Consensus 294 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~i~~~~~ 331 (335)
++|++++.|+.|++||...++......+ |...|..+..
T Consensus 424 ~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~ 462 (537)
T KOG0274|consen 424 NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALAL 462 (537)
T ss_pred ceeEeccccccEEEeecccCceeeeeccCCcccEEEeec
Confidence 6999999999999999999988887777 5666766654
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-30 Score=203.23 Aligned_cols=283 Identities=19% Similarity=0.253 Sum_probs=228.3
Q ss_pred CCcccccceeeeecC-CceEEEecCCeEEEEEecCCce-eeEEee--cCCCCCceEEEEcCCCCEEEEEECCCcEEEEeC
Q 019847 12 YLMEDYYSKVIDWGR-NNVLAVALGPVLFLWKWENGKV-KKLLQV--PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDA 87 (335)
Q Consensus 12 ~~~~~~~~~~~~~~~-~~~~~~~~~~~i~vw~~~~~~~-~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 87 (335)
.+.+...+.++..++ .+.+..+..|.|+|||+..... .++-.+ ......|+++.+.|||+.|++|+.-.++.|||+
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 344555566666665 5667777889999999865322 122222 234678999999999999999999999999999
Q ss_pred CCcee--EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC
Q 019847 88 ETSKL--VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD 165 (335)
Q Consensus 88 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 165 (335)
....+ ..++....-...+++.+| +.++.+++..||.|.|||+. .+.+++.+++|...+.||.++++|..|.+|+-|
T Consensus 495 AapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLh-nq~~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcc-cceeeecccCCCCCceeEEecCCCceeecCCCc
Confidence 76543 344444445677888999 99999999999999999998 555688899999999999999999999999999
Q ss_pred CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCC
Q 019847 166 NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHH 245 (335)
Q Consensus 166 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (335)
.+||.||+++... ++.. ...+.|.++..+|.++++++ |-+++.+.+......+..+...+..-|.++.|.+.|
T Consensus 573 ntvRcWDlregrq---lqqh-dF~SQIfSLg~cP~~dWlav---GMens~vevlh~skp~kyqlhlheScVLSlKFa~cG 645 (705)
T KOG0639|consen 573 NTVRCWDLREGRQ---LQQH-DFSSQIFSLGYCPTGDWLAV---GMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCG 645 (705)
T ss_pred cceeehhhhhhhh---hhhh-hhhhhheecccCCCccceee---ecccCcEEEEecCCccceeecccccEEEEEEecccC
Confidence 9999999987543 2211 23578999999999986665 338899999887766666656667789999999999
Q ss_pred ceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 246 KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
+++++. +.|+-+..|...-+..+...+. .+.|.+..+|.|+++++||+.|....+|.+
T Consensus 646 kwfvSt------GkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 646 KWFVST------GKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceeeec------CchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999876 7899999999999988887765 456999999999999999999999999875
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-27 Score=171.28 Aligned_cols=288 Identities=18% Similarity=0.290 Sum_probs=218.1
Q ss_pred CcccccceeeeecCC-ceEEEe-cCCeEEEEEec------CC----c---eeeEEeecCCCCCceEEEEcCCCCEEEEEE
Q 019847 13 LMEDYYSKVIDWGRN-NVLAVA-LGPVLFLWKWE------NG----K---VKKLLQVPGEDDYPTSVSWSHDAKTLAVGY 77 (335)
Q Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~-~~~~i~vw~~~------~~----~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 77 (335)
+.+...+.+++|+|. .+++++ ..++.+|.... .+ + .....+.+.|.+.|+|.+|+|+|+++++|+
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 345567889999994 566655 55677776432 11 1 111223356899999999999999999999
Q ss_pred CCCcEEEEeCCCce-----eEeeecccccceeEeeecC---CCCCEEEEee-CCCcEEEEecccCCeeeEEeecCCCCEE
Q 019847 78 MDSKLQLWDAETSK-----LVRNLEGHHRRVATSSWNH---WNGHILTSGS-KDKSIINHDVRVSNNVTSCIKAHSGEVC 148 (335)
Q Consensus 78 ~dg~i~iw~~~~~~-----~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~i~ 148 (335)
.|.+|++..++... .-.++..|.+.|..++|.. ..+.+|++++ .|..|++-|...+.. ...+.+|.+.|.
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~-~~a~sghtghil 187 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG-FHALSGHTGHIL 187 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc-ceeecCCcccEE
Confidence 99999998765332 1235778999999999964 1345666654 467788888876554 666889999998
Q ss_pred EEEeecCCCEEEEEeCCCeEEEEEccCCCcccceee-ccC---CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC
Q 019847 149 GLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHR-FTD---HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224 (335)
Q Consensus 149 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~---~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 224 (335)
++ ++-++-.+++|+.|.+|++||++-+.....+.. +.+ ..+.|.+++..|.| ++++++. .|....+||++.+
T Consensus 188 al-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~--~dssc~lydirg~ 263 (350)
T KOG0641|consen 188 AL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGH--ADSSCMLYDIRGG 263 (350)
T ss_pred EE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc-ceeeecc--CCCceEEEEeeCC
Confidence 76 344688999999999999999986544332221 111 23568999999999 5778765 9999999999999
Q ss_pred ceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC----ceeecccCCCCceeEeEEcCCCCEEEEE
Q 019847 225 TCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM----TKVGELQSSNSRILDLSQSPDGLTVATA 299 (335)
Q Consensus 225 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 299 (335)
+.++.+.. ...|.++.|+|...+++++ +-|..|++-|+... -++.....|...+..+.|+|..-.+++.
T Consensus 264 r~iq~f~phsadir~vrfsp~a~yllt~------syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 264 RMIQRFHPHSADIRCVRFSPGAHYLLTC------SYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred ceeeeeCCCccceeEEEeCCCceEEEEe------cccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence 99998865 4689999999999999988 55999999998641 2233455788888999999999999999
Q ss_pred eCCCcEEEEecC
Q 019847 300 GADETIRFWEAF 311 (335)
Q Consensus 300 ~~dg~v~iw~~~ 311 (335)
+.|.++.+|-+.
T Consensus 338 sadkt~tlwa~~ 349 (350)
T KOG0641|consen 338 SADKTATLWALN 349 (350)
T ss_pred cCcceEEEeccC
Confidence 999999999764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-29 Score=195.60 Aligned_cols=253 Identities=20% Similarity=0.320 Sum_probs=209.9
Q ss_pred EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee-----------------e-cccccceeEeeecCCCC
Q 019847 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN-----------------L-EGHHRRVATSSWNHWNG 113 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-----------------~-~~~~~~v~~~~~~~~~~ 113 (335)
.....|.-+|.+++++|++++.++++.+|+|.=|++.+++.... - +.|...+.+++.++ ++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-Dg 214 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-DG 214 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC-CC
Confidence 34567999999999999999999999999999999988763310 1 26778899999999 99
Q ss_pred CEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCee
Q 019847 114 HILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVK 193 (335)
Q Consensus 114 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 193 (335)
++|++|+.|..|.||+.++.+. .+.+.+|.+.|.+++|-.....|++++.|+.|++|+++. ...+.++.+|.+.|.
T Consensus 215 kylatgg~d~~v~Iw~~~t~eh-v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~---~s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEH-VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ---LSYVETLYGHQDGVL 290 (479)
T ss_pred cEEEecCCCceEEEecCcccch-hhcccccccceeeeeeecCccceeeeecCCceEEEehhH---hHHHHHHhCCcccee
Confidence 9999999999999999997765 556889999999999998888999999999999999876 445778889999999
Q ss_pred EEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 194 ALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
.+....-+ ..+++++ .|+++++|++.....+....+...+-|++|-.+.. +++| +++|.|.+|++.+.++
T Consensus 291 ~IdaL~re-R~vtVGg--rDrT~rlwKi~eesqlifrg~~~sidcv~~In~~H-fvsG------SdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 291 GIDALSRE-RCVTVGG--RDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEH-FVSG------SDNGSIALWSLLKKKP 360 (479)
T ss_pred eechhccc-ceEEecc--ccceeEEEeccccceeeeeCCCCCeeeEEEecccc-eeec------cCCceEEEeeecccCc
Confidence 99887766 5888876 99999999996555444444556788888866554 3444 8899999999999888
Q ss_pred eeccc-CC-----------CCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc
Q 019847 274 VGELQ-SS-----------NSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 274 ~~~~~-~~-----------~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 319 (335)
+.+.+ +| ...|++++..|...++++|+.+|.|++|.+..+.....+
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~ 418 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINL 418 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccce
Confidence 77653 22 127899999999999999999999999999998544433
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=196.53 Aligned_cols=287 Identities=16% Similarity=0.216 Sum_probs=222.7
Q ss_pred ccccceeeeecC--C-ceEEE-ecCCeEEEEEecCC--ceeeEEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeC
Q 019847 15 EDYYSKVIDWGR--N-NVLAV-ALGPVLFLWKWENG--KVKKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDA 87 (335)
Q Consensus 15 ~~~~~~~~~~~~--~-~~~~~-~~~~~i~vw~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~ 87 (335)
.+..+.+++|+| + .++++ ...|.|-+||+.+. .....+.+..|..+|.++.|+| +...+++.+.||+|++-|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 456788999998 3 44444 47799999999632 2234556678999999999999 5578899999999999999
Q ss_pred CCcee--EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeC
Q 019847 88 ETSKL--VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGD 164 (335)
Q Consensus 88 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 164 (335)
+++.. +.........+..+.|+. +...++.+..=|...+||+++++.....+..|...|.+++++| ...+||+++.
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~ 343 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASL 343 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeeccc
Confidence 87643 333333556778888988 6666777777779999999998876777788999999999999 5678999999
Q ss_pred CCeEEEEEccCCCcccc-eeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEEC----CCCceEEEeecCC-----
Q 019847 165 DNVVRIWERSKMSSSKS-LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV----QKGTCIHGIDAKA----- 234 (335)
Q Consensus 165 dg~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~----~~~~~~~~~~~~~----- 234 (335)
|++.+|||++....... +.....|...|.+..|+|.+..+++++ .|..|+|||. ....+...+.+..
T Consensus 344 D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~---~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rw 420 (498)
T KOG4328|consen 344 DQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC---QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRW 420 (498)
T ss_pred CcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec---cCCceEEeecccccccCCccceeeccCccccc
Confidence 99999999998766553 444556999999999999999977777 7999999998 4555666666543
Q ss_pred -cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCC-ceeEe-EEcCCCCEEEEE-eCCCcEEEEec
Q 019847 235 -QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNS-RILDL-SQSPDGLTVATA-GADETIRFWEA 310 (335)
Q Consensus 235 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~-~~~~~~~~l~~~-~~dg~v~iw~~ 310 (335)
......|.|+..++++|. --..|-|+|-..++.+..+..... .|.++ .|+|-+..+++| +..|.|+||--
T Consensus 421 lT~fKA~W~P~~~li~vg~------~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 421 LTPFKAAWDPDYNLIVVGR------YPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred ccchhheeCCCccEEEEec------cCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 345678999999999884 367799999988887777654443 55554 799988745555 56788888854
Q ss_pred C
Q 019847 311 F 311 (335)
Q Consensus 311 ~ 311 (335)
+
T Consensus 495 k 495 (498)
T KOG4328|consen 495 K 495 (498)
T ss_pred C
Confidence 4
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=204.58 Aligned_cols=300 Identities=15% Similarity=0.221 Sum_probs=235.7
Q ss_pred eeeeecC--CceEEEecCCeEEEEEecCCc-eeeEEeecCCCCCceEEEEcCC-----------CCEEEEEECCCcEEEE
Q 019847 20 KVIDWGR--NNVLAVALGPVLFLWKWENGK-VKKLLQVPGEDDYPTSVSWSHD-----------AKTLAVGYMDSKLQLW 85 (335)
Q Consensus 20 ~~~~~~~--~~~~~~~~~~~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~dg~i~iw 85 (335)
-++.|++ +.+.++-.|..++|||++.-+ ..+...+-.|...|+.+.--|. ..-+.+++.|++|++|
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 3455665 467777799999999998643 3344445568877877766551 2358899999999999
Q ss_pred eCCCce---eE----------ee------------------------ecccccceeEeeecCCCCCEEEEeeCCCcEEEE
Q 019847 86 DAETSK---LV----------RN------------------------LEGHHRRVATSSWNHWNGHILTSGSKDKSIINH 128 (335)
Q Consensus 86 ~~~~~~---~~----------~~------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~ 128 (335)
+++.+. .. +. .-.....+.+++.+| ++.+|++|..-|++++|
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVY 486 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC-CcceecccCccCceEEE
Confidence 987521 10 00 011234799999999 99999999999999999
Q ss_pred ecccCCeeeEEeecCCCCEEEEEeec---CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCC--Cc
Q 019847 129 DVRVSNNVTSCIKAHSGEVCGLKWSN---EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQ--VN 203 (335)
Q Consensus 129 d~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~ 203 (335)
++..-.. ......|+..|.|+.|+. ..++||+++.|.-|.+||+... ...++++.+|...|+++.|...| ..
T Consensus 487 ~Lq~l~~-~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn--y~l~qtld~HSssITsvKFa~~gln~~ 563 (1080)
T KOG1408|consen 487 DLQELEY-TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN--YDLVQTLDGHSSSITSVKFACNGLNRK 563 (1080)
T ss_pred Eehhhhh-hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc--cchhhhhcccccceeEEEEeecCCceE
Confidence 9985543 556788999999999986 4579999999999999998754 45678889999999999998877 44
Q ss_pred EEEEecCCCCCeEEEEECCCCceEEEe------ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecc
Q 019847 204 VLATGGGREDGCIKIWNVQKGTCIHGI------DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL 277 (335)
Q Consensus 204 ~~~~~~g~~d~~i~i~d~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 277 (335)
++.+| .|..|.+--.++......+ ..+..+..++..|..++++++ +.|..|+||++.++++.+.|
T Consensus 564 MiscG---ADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~------cQDrnirif~i~sgKq~k~F 634 (1080)
T KOG1408|consen 564 MISCG---ADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV------CQDRNIRIFDIESGKQVKSF 634 (1080)
T ss_pred EEecc---CchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE------ecccceEEEeccccceeeee
Confidence 55555 5777665433322111111 124578999999999999988 67999999999999999998
Q ss_pred cC---CCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 278 QS---SNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 278 ~~---~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
++ |.+....+...|.|.||++...|.++.++|+..++....+.+|...|.+++|.
T Consensus 635 Kgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 635 KGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL 692 (1080)
T ss_pred cccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeec
Confidence 75 66678889999999999999999999999999999999999999999999885
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-29 Score=193.69 Aligned_cols=261 Identities=17% Similarity=0.277 Sum_probs=214.3
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS 138 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 138 (335)
..+.++...|....+++|+.|..+.++|...++.+..+++|...|+.+.++| +...+++++.|..|++|....... ..
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~-~~ 297 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSE-PT 297 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEecc-chhheeecCCcceEEeeccccccC-cc
Confidence 4578888888878999999999999999999999999999999999999999 999999999999999999986554 55
Q ss_pred EeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEE
Q 019847 139 CIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKI 218 (335)
Q Consensus 139 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i 218 (335)
....|..+|+.+..+|.|.||++++.||+..+.|++++........ ....-.+++.+|+||| .++.+|. .|+.+++
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~-~~s~v~~ts~~fHpDg-Lifgtgt--~d~~vki 373 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD-ETSDVEYTSAAFHPDG-LIFGTGT--PDGVVKI 373 (506)
T ss_pred ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee-ccccceeEEeeEcCCc-eEEeccC--CCceEEE
Confidence 5678999999999999999999999999999999988654322221 1223458999999999 5777766 9999999
Q ss_pred EECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC-CceeEeEEcCCCCEE
Q 019847 219 WNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN-SRILDLSQSPDGLTV 296 (335)
Q Consensus 219 ~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l 296 (335)
||+.++..+..|..+ ++|..++|+.+|-+++++ .+|+.|++||++..+...++.-.. .++.++.|.+.|.+|
T Consensus 374 wdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~------add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L 447 (506)
T KOG0289|consen 374 WDLKSQTNVAKFPGHTGPVKAISFSENGYWLATA------ADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYL 447 (506)
T ss_pred EEcCCccccccCCCCCCceeEEEeccCceEEEEE------ecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeE
Confidence 999999988888865 589999999999999988 789999999999988877776433 369999999999999
Q ss_pred EEEeCCCcEEEEecCCC--CCCCCcccccccccccee
Q 019847 297 ATAGADETIRFWEAFGP--SGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 297 ~~~~~dg~v~iw~~~~~--~~~~~~~~~~~~i~~~~~ 331 (335)
+.++.|=.|++++-... .+......|.+....+.|
T Consensus 448 ~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~F 484 (506)
T KOG0289|consen 448 GIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRF 484 (506)
T ss_pred EeecceeEEEEEecccccceeeehhhhcccccceeee
Confidence 99988766666664333 333344445443433333
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=181.54 Aligned_cols=255 Identities=22% Similarity=0.324 Sum_probs=202.3
Q ss_pred cCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc---eeEeeecccccceeEeee-cCCCCCEEEEeeCCCcEEEEec
Q 019847 55 PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS---KLVRNLEGHHRRVATSSW-NHWNGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~dg~i~~~d~ 130 (335)
..|.+.|..+...--|++||+++.|++|+|+.++.. +++.++.+|.++|..++| +|.-+.+|++++.||.|.+|.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 468889999888889999999999999999999754 568889999999999999 4567899999999999999998
Q ss_pred ccCCe-eeEEeecCCCCEEEEEeec--CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCC---C---
Q 019847 131 RVSNN-VTSCIKAHSGEVCGLKWSN--EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH---Q--- 201 (335)
Q Consensus 131 ~~~~~-~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~--- 201 (335)
+++.- .......|...|++++|.| -|-.|++++.||.|.+.+.+........+....|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 76532 1234567999999999999 4678999999999999998876444455566789999999999996 3
Q ss_pred -------CcEEEEecCCCCCeEEEEECCCCce--EEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC
Q 019847 202 -------VNVLATGGGREDGCIKIWNVQKGTC--IHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM 271 (335)
Q Consensus 202 -------~~~~~~~~g~~d~~i~i~d~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~ 271 (335)
.+-+++++ .|+.|+||+..+++- ..+++.+ .-+..++|.|.-.+.-+. +++++.||++.||..+..
T Consensus 168 ~~~~~~~~krlvSgG--cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~--iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGG--CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKST--IASCSQDGTVIIWTKDEE 243 (299)
T ss_pred ccCcccccceeeccC--CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCcee--eEEecCCCcEEEEEecCc
Confidence 12366665 899999999988632 2334443 468999999986543332 556699999999987632
Q ss_pred c---eeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 272 T---KVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 272 ~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
. ....++.....+..+.||..|++|+.++.|+.|.+|.-...
T Consensus 244 ~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 244 YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 1 11223445667999999999999999999999999986654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-27 Score=170.41 Aligned_cols=245 Identities=19% Similarity=0.339 Sum_probs=199.7
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC------Cc---------eeEeeecccccceeEeeecCCCCCEEEEee
Q 019847 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE------TS---------KLVRNLEGHHRRVATSSWNHWNGHILTSGS 120 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~------~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 120 (335)
.....|.+++|+|.|.+.++|+...+++|-... .+ -..+.-+.|.+.|.|.+|+| .+.++++|+
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~-~geliatgs 108 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP-CGELIATGS 108 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-ccCeEEecC
Confidence 346789999999999999999999999887432 11 11223456889999999999 999999999
Q ss_pred CCCcEEEEecccCCe----eeEEeecCCCCEEEEEeec----CCCEEEEEe-CCCeEEEEEccCCCcccceeeccCCCCC
Q 019847 121 KDKSIINHDVRVSNN----VTSCIKAHSGEVCGLKWSN----EGNLLASGG-DDNVVRIWERSKMSSSKSLHRFTDHCGG 191 (335)
Q Consensus 121 ~dg~i~~~d~~~~~~----~~~~~~~~~~~i~~~~~~~----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 191 (335)
.|.+|++...+.... .-..+..|.+.|..++|-. .+.+|++++ .|..|++-|... .+.++.+.+|.+.
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~---g~~~~a~sghtgh 185 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR---GQGFHALSGHTGH 185 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC---CCcceeecCCccc
Confidence 999999987754322 1234667999999999965 355777765 466777777554 5668888999999
Q ss_pred eeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec--------CCcEeEEEeCCCCceeeeeeeeeeecCCCeE
Q 019847 192 VKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA--------KAQICGLEWNRHHKEILSGHGFSASGDGNKL 263 (335)
Q Consensus 192 v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (335)
|.++- +-++ .++++++ .|.+|++||++-..++..+.. ...+.+++..|.|+.+++| -.|...
T Consensus 186 ilaly-swn~-~m~~sgs--qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg------~~dssc 255 (350)
T KOG0641|consen 186 ILALY-SWNG-AMFASGS--QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG------HADSSC 255 (350)
T ss_pred EEEEE-EecC-cEEEccC--CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeec------cCCCce
Confidence 98763 2223 6888876 999999999999988887753 1468999999999999998 569999
Q ss_pred EEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 264 CLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 264 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
.+||++.++.++.+..|...|.++.|+|...||++++.|..|++=|+.+.-
T Consensus 256 ~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 256 MLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred EEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccch
Confidence 999999999999999999999999999999999999999999999998753
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=201.19 Aligned_cols=282 Identities=20% Similarity=0.295 Sum_probs=213.2
Q ss_pred CceEEEe-cCCeEEEEEecCCcee----eEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee--eccc
Q 019847 27 NNVLAVA-LGPVLFLWKWENGKVK----KLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN--LEGH 99 (335)
Q Consensus 27 ~~~~~~~-~~~~i~vw~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~ 99 (335)
..+++.+ .+|.|.++|....... +......|...|..+.|-|....|++++.|.++++||+++.++... +.+|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 3566554 7899999998765443 1234468999999999999777899999999999999999988877 8899
Q ss_pred ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe--------------------------eeEEeecCCCCEEE---E
Q 019847 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN--------------------------VTSCIKAHSGEVCG---L 150 (335)
Q Consensus 100 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--------------------------~~~~~~~~~~~i~~---~ 150 (335)
...|.+++|.|.+...|++|+.||.|.+||++.... -......+...|.+ +
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV 223 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence 999999999999999999999999999999964330 00111234444554 5
Q ss_pred EeecCCCEEEEEeC-CCeEEEEEccCCCcccc-----eeeccCC---CCCeeEEEecCCCCcEEEEecCCCCCeEEEEEC
Q 019847 151 KWSNEGNLLASGGD-DNVVRIWERSKMSSSKS-----LHRFTDH---CGGVKALAWSPHQVNVLATGGGREDGCIKIWNV 221 (335)
Q Consensus 151 ~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~-----~~~~~~~---~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 221 (335)
.+..|...||+++. |+.|++||++....... ...+..| .-.+.++.....|.++++.| .|+.|++||+
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC---tD~sIy~ynm 300 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC---TDNSIYFYNM 300 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe---cCCcEEEEec
Confidence 55668889999888 99999999997543211 1122223 33578888888999999998 5999999999
Q ss_pred CCCc--eEEEeecC---CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce-eecccCCCCceeEeEEcCCC-C
Q 019847 222 QKGT--CIHGIDAK---AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK-VGELQSSNSRILDLSQSPDG-L 294 (335)
Q Consensus 222 ~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~-~ 294 (335)
..-. ++..+.+. ..-..-..+|++.++++| +.|...++|.+.+.+. ...+.+|...|++++|.|.. .
T Consensus 301 ~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~Sg------Ssd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t 374 (720)
T KOG0321|consen 301 RSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSG------SSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATT 374 (720)
T ss_pred cccCcCchhhccCcccceeeeeeecCCCCceEecc------CCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCC
Confidence 8643 22222221 122334568999999988 7799999999988654 55677999999999998843 3
Q ss_pred EEEEEeCCCcEEEEecCCCCCCC
Q 019847 295 TVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 295 ~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
-+++++.|..+++|++..+-...
T Consensus 375 ~v~TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 375 PVATCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred CceeeccCcceEEEeccCchhhc
Confidence 47778999999999997654433
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=182.76 Aligned_cols=287 Identities=18% Similarity=0.304 Sum_probs=219.5
Q ss_pred cccccceeeeecC---CceEEEecCCeEEEEEecCCce----------ee---EEeecCCCCCceEEEEcC-CCCEEEEE
Q 019847 14 MEDYYSKVIDWGR---NNVLAVALGPVLFLWKWENGKV----------KK---LLQVPGEDDYPTSVSWSH-DAKTLAVG 76 (335)
Q Consensus 14 ~~~~~~~~~~~~~---~~~~~~~~~~~i~vw~~~~~~~----------~~---~~~~~~~~~~v~~~~~~~-~~~~l~~~ 76 (335)
++...++++...+ ..+++++.||.|.+||++.... +. ...-.+|.-.|..+.|-| |..++.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 3456677777766 3688888999999999976431 11 111246888999999999 67788899
Q ss_pred ECCCcEEEEeCCCceeEeeecccccceeEeeecCCC--CCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec
Q 019847 77 YMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWN--GHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN 154 (335)
Q Consensus 77 ~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~ 154 (335)
+.|.+++|||.++.+....|+ .++.|.+-+++|-. ..++++|..+-.|++.|+..+. ....+.+|.+.|.++.|+|
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred cccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ceeeeccccCceEEEEecc
Confidence 999999999999998888887 56788888888732 3578888899999999999655 5778999999999999999
Q ss_pred CCC-EEEEEeCCCeEEEEEccCCC------------cccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEEC
Q 019847 155 EGN-LLASGGDDNVVRIWERSKMS------------SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV 221 (335)
Q Consensus 155 ~~~-~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 221 (335)
... .|++|+.||.|++||++... ....++.-..|.+.+..++|..++.+++.++ .|..+++|+.
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g---td~r~r~wn~ 275 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG---TDDRIRVWNM 275 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc---CccceEEeec
Confidence 554 67899999999999998641 1222334557889999999999998887776 6999999999
Q ss_pred CCCceEEE-ee--cCCcEeEEEe---CCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCE
Q 019847 222 QKGTCIHG-ID--AKAQICGLEW---NRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLT 295 (335)
Q Consensus 222 ~~~~~~~~-~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 295 (335)
.+|+.... +- .++.-...++ +.+...+ ++. -.++.+.++.+-.+..+..+..|...|.+.++.|+-+.
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vf-v~~-----p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~ 349 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVF-VLF-----PNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQ 349 (397)
T ss_pred ccCcccccccccccccccccceEEEeecccceE-EEE-----ecCCeEEEEEccCceEEEeeecccceeeEEeecCchhh
Confidence 98864221 10 0111111111 1222211 111 33699999999999999999999889999999999889
Q ss_pred EEEEeCCCcEEEEecC
Q 019847 296 VATAGADETIRFWEAF 311 (335)
Q Consensus 296 l~~~~~dg~v~iw~~~ 311 (335)
..+|..|+.+..|-..
T Consensus 350 ~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 350 CFTGDMNGNIYMWSPA 365 (397)
T ss_pred hhccccCCcccccccc
Confidence 9999999999999873
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=201.91 Aligned_cols=239 Identities=21% Similarity=0.418 Sum_probs=202.5
Q ss_pred cccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecC-CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 16 DYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPG-EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 16 ~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
...++++.|++ +.++++..+|.|.|||..+.+..+ .+.+ |...|-+++|+ +..+.+|+.|+.|..+|++..+.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~--~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR--TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc--cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh
Confidence 56788899997 356666789999999998776544 4445 99999999997 66899999999999999998766
Q ss_pred Eee-ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEe--CCCeE
Q 019847 93 VRN-LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGG--DDNVV 168 (335)
Q Consensus 93 ~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~dg~i 168 (335)
... +.+|...|..++|++ ++.++++|+.|+.+.|||..... +...+..|..+|.+++|+| ...+||+|+ .|+.|
T Consensus 293 ~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i 370 (484)
T KOG0305|consen 293 VVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCI 370 (484)
T ss_pred hhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCcc-ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEE
Confidence 555 888999999999999 99999999999999999996444 4666788999999999999 778899874 69999
Q ss_pred EEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCce
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKE 247 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 247 (335)
++||..++. .+.... ..+.|..|.|++..+.++++- |..++.|.||+..+.+.+..+..| ..|..++++|+|..
T Consensus 371 ~fwn~~~g~---~i~~vd-tgsQVcsL~Wsk~~kEi~sth-G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~ 445 (484)
T KOG0305|consen 371 KFWNTNTGA---RIDSVD-TGSQVCSLIWSKKYKELLSTH-GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGET 445 (484)
T ss_pred EEEEcCCCc---Eecccc-cCCceeeEEEcCCCCEEEEec-CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCE
Confidence 999988643 344433 467899999999998787776 678899999999998888888765 57999999999999
Q ss_pred eeeeeeeeeecCCCeEEEEECCCC
Q 019847 248 ILSGHGFSASGDGNKLCLWKYPNM 271 (335)
Q Consensus 248 ~~~~~~~~~~~~~~~i~i~d~~~~ 271 (335)
++++ +.|.++++|++-..
T Consensus 446 i~t~------a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 446 IVTG------AADETLRFWNLFDE 463 (484)
T ss_pred EEEe------cccCcEEeccccCC
Confidence 9988 77999999998664
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-29 Score=180.70 Aligned_cols=240 Identities=23% Similarity=0.402 Sum_probs=196.1
Q ss_pred eeeecCCceEEEecCCeEEEEEecCCce-eeEEeecCCCCCceEEEEcC--CCCEEEEEECCCcEEEEeCCCcee--Eee
Q 019847 21 VIDWGRNNVLAVALGPVLFLWKWENGKV-KKLLQVPGEDDYPTSVSWSH--DAKTLAVGYMDSKLQLWDAETSKL--VRN 95 (335)
Q Consensus 21 ~~~~~~~~~~~~~~~~~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~--~~~ 95 (335)
.+++.+.+++++++|++|+|+..+.+.. ..+.++.+|.++|..++|.. .|.+||+++.||.|.||.-++++- ...
T Consensus 18 ~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e 97 (299)
T KOG1332|consen 18 QLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYE 97 (299)
T ss_pred hhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhh
Confidence 4677888999999999999999987654 67788999999999999976 899999999999999999887743 445
Q ss_pred ecccccceeEeeecCCC-CCEEEEeeCCCcEEEEecccCC--eeeEEeecCCCCEEEEEeecC---C-----------CE
Q 019847 96 LEGHHRRVATSSWNHWN-GHILTSGSKDKSIINHDVRVSN--NVTSCIKAHSGEVCGLKWSNE---G-----------NL 158 (335)
Q Consensus 96 ~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~---~-----------~~ 158 (335)
...|...|++++|.|.+ +-.|++++.||.|.+.+.+... ...+....|.-.|++++|.|. | +.
T Consensus 98 ~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 98 HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence 66899999999999843 4578899999999999988652 234456689999999999985 4 56
Q ss_pred EEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCC---CcEEEEecCCCCCeEEEEECCCCce--EEEe--e
Q 019847 159 LASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQ---VNVLATGGGREDGCIKIWNVQKGTC--IHGI--D 231 (335)
Q Consensus 159 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~g~~d~~i~i~d~~~~~~--~~~~--~ 231 (335)
|++|+.|..|+||+.... ....-..+.+|.+.|+.++|.|.- ...+++++ +||++.||-.+.... ..++ +
T Consensus 178 lvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S--qDg~viIwt~~~e~e~wk~tll~~ 254 (299)
T KOG1332|consen 178 LVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS--QDGTVIIWTKDEEYEPWKKTLLEE 254 (299)
T ss_pred eeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEec--CCCcEEEEEecCccCccccccccc
Confidence 999999999999998865 445556689999999999999974 34677777 999999998763211 1111 1
Q ss_pred cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC
Q 019847 232 AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269 (335)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 269 (335)
.+..+..+.|++.|..|+++ +.|+.+.+|.-.
T Consensus 255 f~~~~w~vSWS~sGn~LaVs------~GdNkvtlwke~ 286 (299)
T KOG1332|consen 255 FPDVVWRVSWSLSGNILAVS------GGDNKVTLWKEN 286 (299)
T ss_pred CCcceEEEEEeccccEEEEe------cCCcEEEEEEeC
Confidence 35679999999999999887 679999999743
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-29 Score=198.50 Aligned_cols=258 Identities=17% Similarity=0.249 Sum_probs=194.2
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce----eEeeec-ccccceeEeeecCCCCCEEEEeeCCCcE
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK----LVRNLE-GHHRRVATSSWNHWNGHILTSGSKDKSI 125 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i 125 (335)
.+.+++|+..|.++++.|.|-+|++|+.|..|++||+.... ..+.+. .....|.++.|++ .++.|++.+.....
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGSAQA 238 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecCcce
Confidence 45678899999999999999999999999999999997532 222332 2345799999999 88888888888999
Q ss_pred EEEecccCCeeeE------------EeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeec---cCCC
Q 019847 126 INHDVRVSNNVTS------------CIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRF---TDHC 189 (335)
Q Consensus 126 ~~~d~~~~~~~~~------------~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~ 189 (335)
+++|-. +..+.. ..++|...+++.+|+| +...+++++.||++++||++.......+... .+..
T Consensus 239 kl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 239 KLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 999975 333222 2457899999999999 4568999999999999999876443222221 2334
Q ss_pred CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce--EEEee--c--CCcEeEEEeCCCCceeeeeeeeeeecCCCeE
Q 019847 190 GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC--IHGID--A--KAQICGLEWNRHHKEILSGHGFSASGDGNKL 263 (335)
Q Consensus 190 ~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~--~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (335)
-+++.++|+|+++. ++++. .||.|.+|+..+... ...+. + +..|+++.||++|++|++- +.|+++
T Consensus 318 v~~tsC~~nrdg~~-iAagc--~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR------g~D~tL 388 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKL-IAAGC--LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR------GFDDTL 388 (641)
T ss_pred cCceeeecCCCcch-hhhcc--cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhc------cCCCce
Confidence 56889999999976 55544 899999999865432 22221 2 3479999999999999987 789999
Q ss_pred EEEECCCCc-eeecccCCC--CceeEeEEcCCCCEEEEEe------CCCcEEEEecCCCCCCCCc
Q 019847 264 CLWKYPNMT-KVGELQSSN--SRILDLSQSPDGLTVATAG------ADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 264 ~i~d~~~~~-~~~~~~~~~--~~i~~~~~~~~~~~l~~~~------~dg~v~iw~~~~~~~~~~~ 319 (335)
++||+++.+ ++....+-. -+-+.++|||+.++|++|+ ..|.+.+||..+.....++
T Consensus 389 KvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 389 KVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred eeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 999998854 444443322 2457899999999999986 3577999987766555443
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-28 Score=205.02 Aligned_cols=241 Identities=17% Similarity=0.283 Sum_probs=202.8
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc-eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC
Q 019847 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN 134 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 134 (335)
.|+..-+.++|.|+|++|++++.||.|++|+.... +....+..+...|.+++. ..+.|++|+.+++|.+|.+..+.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee---cccceEEeeccceEEEeeCCCCC
Confidence 57888899999999999999999999999997765 555555557788888887 56699999999999999998665
Q ss_pred eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC
Q 019847 135 NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG 214 (335)
Q Consensus 135 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 214 (335)
. -..+....-++++++|+.+|+++|.|+.|-.|++-++.+. .....+.+|.++|.++.|+|.+..++++. -||
T Consensus 88 ~-~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~---s~~~~lrgh~apVl~l~~~p~~~fLAvss---~dG 160 (933)
T KOG1274|consen 88 E-DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS---SQEKVLRGHDAPVLQLSYDPKGNFLAVSS---CDG 160 (933)
T ss_pred c-cceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc---chheeecccCCceeeeeEcCCCCEEEEEe---cCc
Confidence 4 3345557788999999999999999999999999997764 34677789999999999999996555544 699
Q ss_pred eEEEEECCCCceEEEeec---------CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccC--CCCc
Q 019847 215 CIKIWNVQKGTCIHGIDA---------KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS--SNSR 283 (335)
Q Consensus 215 ~i~i~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~ 283 (335)
.|++||++++.+...+.. ...+..++|+|++..++.. ..|+.|++|+..++++...+.. +...
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~------~~d~~Vkvy~r~~we~~f~Lr~~~~ss~ 234 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP------PVDNTVKVYSRKGWELQFKLRDKLSSSK 234 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee------ccCCeEEEEccCCceeheeecccccccc
Confidence 999999999887766642 2357789999997777655 5699999999999988877653 4445
Q ss_pred eeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 284 ILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 284 i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
+..++|+|+|+|||+++.||.|.|||.++
T Consensus 235 ~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 235 FSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 99999999999999999999999999996
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=187.94 Aligned_cols=223 Identities=26% Similarity=0.505 Sum_probs=182.0
Q ss_pred CceEEEe--cCCeEEEEEecC--------------CceeeEEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCC
Q 019847 27 NNVLAVA--LGPVLFLWKWEN--------------GKVKKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAET 89 (335)
Q Consensus 27 ~~~~~~~--~~~~i~vw~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~ 89 (335)
+..++++ ..|.|+||++.. .+..+++++.+|...=+.++||| ....|++|.--+.|++|...+
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~ 243 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST 243 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence 4445544 679999999752 23456788899999999999999 333588888888999999988
Q ss_pred ceeE---eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe-eeEEeecCCCCEEEEEeecCCCEEEEEeCC
Q 019847 90 SKLV---RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN-VTSCIKAHSGEVCGLKWSNEGNLLASGGDD 165 (335)
Q Consensus 90 ~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 165 (335)
+.-. ..+.+|...|-.++|+|.....|++|+.||+|+|||++.+.+ .....+.|.+.|+.|.|+....+||+|+.|
T Consensus 244 g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd 323 (440)
T KOG0302|consen 244 GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDD 323 (440)
T ss_pred CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCC
Confidence 7543 346679999999999999999999999999999999997732 233447899999999999988899999999
Q ss_pred CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-------------------ce
Q 019847 166 NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-------------------TC 226 (335)
Q Consensus 166 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-------------------~~ 226 (335)
|+++|||+|..+..+++..++.|..+|+++.|+|.....+++++ .|.+|.+||+.-. ++
T Consensus 324 Gt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg--~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQL 401 (440)
T KOG0302|consen 324 GTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG--EDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQL 401 (440)
T ss_pred ceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc--CCCcEEEEEeeccCChhhhccccccchhcCCcee
Confidence 99999999998888999999999999999999999888888887 8999999998532 12
Q ss_pred EEEeecCCcEeEEEeCCCCceeeee
Q 019847 227 IHGIDAKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (335)
+........+..+.|+++-.-+++.
T Consensus 402 LFVHqGQke~KevhWH~QiPG~lvs 426 (440)
T KOG0302|consen 402 LFVHQGQKEVKEVHWHRQIPGLLVS 426 (440)
T ss_pred EEEecchhHhhhheeccCCCCeEEE
Confidence 2223344567788888887665544
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-28 Score=182.93 Aligned_cols=259 Identities=22% Similarity=0.293 Sum_probs=191.1
Q ss_pred eEEEEEecCCceee---EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee---------------------
Q 019847 37 VLFLWKWENGKVKK---LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL--------------------- 92 (335)
Q Consensus 37 ~i~vw~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--------------------- 92 (335)
...-|+.+..+... ...+.+|...|++++|+.||++|++++.|++|++|+++..+.
T Consensus 62 r~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 62 RNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFA 141 (420)
T ss_pred chhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEEC
Confidence 35556655444322 234579999999999999999999999999999999753210
Q ss_pred ---------------Eeee-----------------------cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC
Q 019847 93 ---------------VRNL-----------------------EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN 134 (335)
Q Consensus 93 ---------------~~~~-----------------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 134 (335)
+..+ +.|.-.+..+-... ++.+|++++.|..|.+|+++ ++
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq 219 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQ 219 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cc
Confidence 0000 00112222333333 56789999999999999997 44
Q ss_pred eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCC-----CcccceeeccCCCCCeeEEEecCCCCcEEEEec
Q 019847 135 NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM-----SSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 135 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
.+.........-+..+.+|+|+++++++.--.|++|.+--. +.......+.+|...|..++|+|+..++++++
T Consensus 220 -~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS- 297 (420)
T KOG2096|consen 220 -LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS- 297 (420)
T ss_pred -eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe-
Confidence 45555555566677889999999999999999999986321 22344567889999999999999997766655
Q ss_pred CCCCCeEEEEECCC-------CceEEEee-----cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecc
Q 019847 210 GREDGCIKIWNVQK-------GTCIHGID-----AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL 277 (335)
Q Consensus 210 g~~d~~i~i~d~~~-------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 277 (335)
.||++++||..- .+.++... .......+..+|.|+.++.+. ...+++|..++++...++
T Consensus 298 --kDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-------gs~l~~~~se~g~~~~~~ 368 (420)
T KOG2096|consen 298 --KDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-------GSDLKVFASEDGKDYPEL 368 (420)
T ss_pred --cCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-------CCceEEEEcccCccchhH
Confidence 899999999752 12222221 133455899999999998763 688999999998887776
Q ss_pred c-CCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 278 Q-SSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 278 ~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
+ .|...|.+++|+++|+++++++ |..+++..
T Consensus 369 e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 369 EDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred HHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 5 5888999999999999999987 56787775
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=210.15 Aligned_cols=247 Identities=19% Similarity=0.381 Sum_probs=197.5
Q ss_pred ccceeeeecC---CceEEEecCCeEEEEEecCC-ceeeEEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCCce
Q 019847 17 YYSKVIDWGR---NNVLAVALGPVLFLWKWENG-KVKKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 17 ~~~~~~~~~~---~~~~~~~~~~~i~vw~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
+.+.-+.|+. +.+++++..|.|.+||+... .......+..|+..+.++.|++ ...+|++|+.||.|++||++..+
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence 4455677875 45667778999999999762 2223445678999999999998 45788999999999999999998
Q ss_pred eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEE
Q 019847 92 LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
-...+.+....|+.++|+|..++.|+++...|.+++||++........+.+|.++|.++.|+|++.+||+|+.|+.|+||
T Consensus 168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW 247 (839)
T ss_pred ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence 88889889999999999999999999999999999999999888888899999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc-eEEEeec-CCcEeEEEeCCCCceee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT-CIHGIDA-KAQICGLEWNRHHKEIL 249 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~ 249 (335)
|...... +.+.++. ...++.++.|-|...+.+++++.-.|-.|+|||++..- +..++.. ...++.++|......+
T Consensus 248 d~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~- 324 (839)
T KOG0269|consen 248 DMTDSRA-KPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRIN- 324 (839)
T ss_pred eccCCCc-cceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCcee-
Confidence 9886433 3444443 45789999999999999999876678999999997643 3445544 4567788887633322
Q ss_pred eeeeeeeecCCCeEEEEECCC
Q 019847 250 SGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~ 270 (335)
+.+++.|+.+..-..++
T Consensus 325 ----l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 325 ----LWSCSKDGTVLQHLFKN 341 (839)
T ss_pred ----eEeecCccHHHHhhhhc
Confidence 12236677665544443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-27 Score=175.90 Aligned_cols=257 Identities=14% Similarity=0.210 Sum_probs=199.0
Q ss_pred CCcccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCC--EEEEEECCCcEEEEeCCC
Q 019847 12 YLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAK--TLAVGYMDSKLQLWDAET 89 (335)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iw~~~~ 89 (335)
+..+...+++++.+...+++++.|.+|+|||++...... .+-.|.+.|+++.|.++-. .|++|+.||.|.+|+...
T Consensus 39 ~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg--~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 39 FSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLG--ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred ccccccceeEEEecceeEeccCCCCcEEEEeccchhhhc--ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC
Confidence 455678899999999999999999999999998876433 4457899999999999765 899999999999999999
Q ss_pred ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEE
Q 019847 90 SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVR 169 (335)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 169 (335)
.+++..+++|...|+.++.+| .+++.++.+.|+.++.||+-.++.-......+. .+.+.|+|.|.+++.+..+ .|-
T Consensus 117 W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v~~~~-~i~ 192 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFVVSGRN-KID 192 (362)
T ss_pred eEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCc--ceeeEEcCCCCEEEEEecc-EEE
Confidence 999999999999999999999 999999999999999999987765333322233 3449999999999998866 589
Q ss_pred EEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEe--CCCCc
Q 019847 170 IWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEW--NRHHK 246 (335)
Q Consensus 170 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~--~~~~~ 246 (335)
+|.+..... +.... .+..+.++.|...+ .+++|+ .|+.|.+||.....+...+.. ...|..+.+ .|++.
T Consensus 193 i~q~d~A~v---~~~i~-~~~r~l~~~~l~~~--~L~vG~--d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~ 264 (362)
T KOG0294|consen 193 IYQLDNASV---FREIE-NPKRILCATFLDGS--ELLVGG--DNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHE 264 (362)
T ss_pred EEecccHhH---hhhhh-ccccceeeeecCCc--eEEEec--CCceEEEeccCCCccceeeecchhheeeeEEEecCCce
Confidence 999776332 22222 23457777776554 455554 899999999998888888765 457777763 45666
Q ss_pred eeeeeeeeeeecCCCeEEEEECCCC-----ceeecccCCCCceeEeEE
Q 019847 247 EILSGHGFSASGDGNKLCLWKYPNM-----TKVGELQSSNSRILDLSQ 289 (335)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~ 289 (335)
++++. +.||.|++||++.. +++..+.. ..+++|+..
T Consensus 265 ~lvTa------SSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 265 YLVTA------SSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred EEEEe------ccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 77666 78999999999765 33333332 344555543
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=180.49 Aligned_cols=270 Identities=15% Similarity=0.285 Sum_probs=220.5
Q ss_pred ceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEE
Q 019847 47 KVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSII 126 (335)
Q Consensus 47 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 126 (335)
+......+.+|.+.|..++-......+.+++.|.+.+||.+++++++..+.+|.+.|.+++|++ .+.++++++.|++-.
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAH 215 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecc-ccceEEEccCCcchH
Confidence 3334556789999999999988888899999999999999999999999999999999999999 999999999999999
Q ss_pred EEec------ccC---------------------------------CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCe
Q 019847 127 NHDV------RVS---------------------------------NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNV 167 (335)
Q Consensus 127 ~~d~------~~~---------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 167 (335)
||.. ... ..++..+.+|.+.|.+..|...|+.+++++.|.+
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRT 295 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRT 295 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccc
Confidence 9972 110 0234457789999999999999999999999999
Q ss_pred EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-ceEEEeecC-CcEeEEEeCCCC
Q 019847 168 VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-TCIHGIDAK-AQICGLEWNRHH 245 (335)
Q Consensus 168 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~-~~~~~~~~~~~~ 245 (335)
..+||++++ ..+..+.+|....+.++-+|.. .|+++++ .|.+.++||++.. ..+..|+++ ..+++..|..+.
T Consensus 296 AnlwDVEtg---e~v~~LtGHd~ELtHcstHptQ-rLVvTsS--rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd 369 (481)
T KOG0300|consen 296 ANLWDVETG---EVVNILTGHDSELTHCSTHPTQ-RLVVTSS--RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD 369 (481)
T ss_pred ceeeeeccC---ceeccccCcchhccccccCCcc-eEEEEec--cCceeEeccchhhcceeeeecccccceeEEEEecCC
Confidence 999998874 5688889999999999999987 5777766 8999999999843 334556654 468888888776
Q ss_pred ceeeeeeeeeeecCCCeEEEEECCCCc-eeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC----cc
Q 019847 246 KEILSGHGFSASGDGNKLCLWKYPNMT-KVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED----SV 320 (335)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~----~~ 320 (335)
+ +++| ++|.+|++||+++.. ++.++. -.++++.++.+..+..++.-..+..|++||+.+...... ..
T Consensus 370 ~-vVSg------SDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRq 441 (481)
T KOG0300|consen 370 R-VVSG------SDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQ 441 (481)
T ss_pred c-eeec------CCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccc
Confidence 5 3344 889999999998854 455554 356789999999999999988899999999998765443 34
Q ss_pred cccccccccee
Q 019847 321 SHLAGLVSLKT 331 (335)
Q Consensus 321 ~~~~~i~~~~~ 331 (335)
+|...|.+..+
T Consensus 442 gHrRMV~c~AW 452 (481)
T KOG0300|consen 442 GHRRMVTCCAW 452 (481)
T ss_pred ccceeeeeeec
Confidence 66666655544
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-27 Score=198.21 Aligned_cols=272 Identities=14% Similarity=0.220 Sum_probs=215.4
Q ss_pred ceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 19 SKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 19 ~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
.+.++|.+ +.+++++.|+.|++|+.....-.+. .+..+...|.+++- .+.+|++|+.+++|.+|.+..++.-..+
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~-ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE-TIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc-hhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCcccee
Confidence 44566665 5677888999999999766532221 12226777777776 5569999999999999999988776667
Q ss_pred cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCC
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 176 (335)
....-++++++|+. ++++++.|+.|-.|++.+...... ...+.+|.++|.++.|+|++++||+.+-||.|++||+.+.
T Consensus 93 ~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~-~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 93 ARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQ-EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG 170 (933)
T ss_pred eeeeccceEEEEec-CCcEEEeecCceeEEEEeccccch-heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence 66778999999998 999999999999999999986655 6668899999999999999999999999999999999876
Q ss_pred CcccceeeccC----C-CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec---CCcEeEEEeCCCCcee
Q 019847 177 SSSKSLHRFTD----H-CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA---KAQICGLEWNRHHKEI 248 (335)
Q Consensus 177 ~~~~~~~~~~~----~-~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 248 (335)
.....+..... . ...+..++|+|++..+++.+ .|+.|++|+..+++....+.. ...+..++|+|.|+|+
T Consensus 171 ~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~---~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 171 ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP---VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI 247 (933)
T ss_pred hhhhhcccCCccccccccceeeeeeecCCCCeEEeec---cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence 54333332221 1 34567899999988888877 599999999999988887764 3358999999999999
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEE
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw 308 (335)
+++ +.+|.|.|||+++.+. ......|++++|.|+..-+-.-...|...+|
T Consensus 248 AAs------~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 248 AAS------TLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred eee------ccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 988 6799999999988332 3334579999999998766555555555444
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=179.10 Aligned_cols=222 Identities=21% Similarity=0.350 Sum_probs=180.6
Q ss_pred CCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCCcee----------Ee-----eecccccceeEeeecCCCCCEEEEe
Q 019847 56 GEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAETSKL----------VR-----NLEGHHRRVATSSWNHWNGHILTSG 119 (335)
Q Consensus 56 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~----------~~-----~~~~~~~~v~~~~~~~~~~~~l~~~ 119 (335)
.|.+.|+++...+ .|+|+++|+.||.|.+||++.... +. .-.+|.-.|.++.|-|.+..+|.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 5889999999988 789999999999999999975431 11 1235778999999999999999999
Q ss_pred eCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec---CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEE
Q 019847 120 SKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN---EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALA 196 (335)
Q Consensus 120 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 196 (335)
+.|.++++||.++.+.... ...++.|.+-+++| ...++|+|..|-.|++.|+..+ ..-+.+.+|.+.|.++.
T Consensus 121 SFDhtlKVWDtnTlQ~a~~--F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG---s~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVD--FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG---SFSHTLSGHRDGVLAVE 195 (397)
T ss_pred cccceEEEeecccceeeEE--eecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC---cceeeeccccCceEEEE
Confidence 9999999999987664332 24677889989988 3557888999999999998874 45788899999999999
Q ss_pred ecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce---
Q 019847 197 WSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK--- 273 (335)
Q Consensus 197 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~--- 273 (335)
|+|..++++++++ .||.|++||++.. .|..++.|..+++.
T Consensus 196 Wsp~~e~vLatgs--aDg~irlWDiRra-----------------------------------sgcf~~lD~hn~k~~p~ 238 (397)
T KOG4283|consen 196 WSPSSEWVLATGS--ADGAIRLWDIRRA-----------------------------------SGCFRVLDQHNTKRPPI 238 (397)
T ss_pred eccCceeEEEecC--CCceEEEEEeecc-----------------------------------cceeEEeecccCccCcc
Confidence 9999999999988 9999999999853 23344444433222
Q ss_pred eecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc
Q 019847 274 VGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 319 (335)
++.-.+|.+.+..++|+.++.++++.+.|..+++|+...+......
T Consensus 239 ~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~ 284 (397)
T KOG4283|consen 239 LKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLRE 284 (397)
T ss_pred ccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccc
Confidence 2234578999999999999999999999999999999988765543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-27 Score=177.60 Aligned_cols=278 Identities=13% Similarity=0.254 Sum_probs=215.6
Q ss_pred ceeeeecC-C-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 19 SKVIDWGR-N-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 19 ~~~~~~~~-~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
..|+.|++ + .+++++.+|.|.|||+.+....+ .+.+|..+|.+++||++|+.|++++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar--~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR--MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh--hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 67888998 3 45556789999999999987644 45689999999999999999999999999999999999999888
Q ss_pred cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC-----CCCEEEEEeecCCCEEEEEeCCCeEEEE
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH-----SGEVCGLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
. ...+|+...|+|.+.+..++.-.+..-.+-++.... ...+... .....+..|.+.|+++++|...|.+.++
T Consensus 104 r-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 104 R-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY 180 (405)
T ss_pred E-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence 7 778999999999777777777777666666665322 2222111 1112334588899999999999999999
Q ss_pred EccCCCcccceeeccCCC-CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-------ceE--EEee---cCCcEeE
Q 019847 172 ERSKMSSSKSLHRFTDHC-GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-------TCI--HGID---AKAQICG 238 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-------~~~--~~~~---~~~~~~~ 238 (335)
|..+. +.+..++-.. ..|..+.++..|..++.-+ .|+.||.|+++.- ++. +.+. ...+-.+
T Consensus 181 ~a~t~---e~vas~rits~~~IK~I~~s~~g~~liiNt---sDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 181 DAETL---ECVASFRITSVQAIKQIIVSRKGRFLIINT---SDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ecchh---eeeeeeeechheeeeEEEEeccCcEEEEec---CCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 97764 4444444333 6788999999997776655 6999999998621 111 1111 1335678
Q ss_pred EEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC-CceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 239 LEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN-SRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
++|+.+|.++.++. .....++||....|.+++.+.+.. ....++.|+|-...+++- ..|.+++|.....
T Consensus 255 ccfs~dgeYv~a~s-----~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGS-----ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred eeecCCccEEEecc-----ccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence 89999999998774 567889999999999999999877 567889999998888877 6799999987643
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=183.49 Aligned_cols=284 Identities=19% Similarity=0.258 Sum_probs=222.8
Q ss_pred cccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCC-EEEEEECCCcEEEEeCCCc
Q 019847 14 MEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAK-TLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~ 90 (335)
+....++++.|++. -+++++.|+.+++|.++......+..+.-...+|.+.+|.|+|. .+++++....++.||+++.
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 45567999999995 58888999999999997654433333333467899999999999 8899999999999999987
Q ss_pred eeEee--ecccc-cceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCe
Q 019847 91 KLVRN--LEGHH-RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNV 167 (335)
Q Consensus 91 ~~~~~--~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 167 (335)
+..+. ..++. ..+.....+| ++++|+..+..|.|.+....+++.+.. + .-.+.|..++|+.+++.|++++.+|.
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s-~-KieG~v~~~~fsSdsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITS-F-KIEGVVSDFTFSSDSKELLASGGTGE 367 (514)
T ss_pred ccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhhe-e-eeccEEeeEEEecCCcEEEEEcCCce
Confidence 65432 33333 4567778888 999999999999999999887665333 3 25678999999999999999999999
Q ss_pred EEEEEccCCCcccceeeccCCCCCe--eEEEecCCCCcEEEEecCCCCCeEEEEECCC------CceEEEee-cCCcEeE
Q 019847 168 VRIWERSKMSSSKSLHRFTDHCGGV--KALAWSPHQVNVLATGGGREDGCIKIWNVQK------GTCIHGID-AKAQICG 238 (335)
Q Consensus 168 i~iwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~------~~~~~~~~-~~~~~~~ 238 (335)
|.+||++.. ..++.+.. .+.| ++++.++++. ++++|+ ..|.|.|||..+ .+++..+. ....|++
T Consensus 368 V~v~nl~~~---~~~~rf~D-~G~v~gts~~~S~ng~-ylA~GS--~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its 440 (514)
T KOG2055|consen 368 VYVWNLRQN---SCLHRFVD-DGSVHGTSLCISLNGS-YLATGS--DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS 440 (514)
T ss_pred EEEEecCCc---ceEEEEee-cCccceeeeeecCCCc-eEEecc--CcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence 999999875 44555543 2333 5677788885 777776 999999999654 23444443 2457999
Q ss_pred EEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC---CceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 239 LEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN---SRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
++|+|+.+.++.+. ...+..+++-.+.+......++... +.|+|++|+|.+.+||.|..+|.+.+|.+.
T Consensus 441 l~Fn~d~qiLAiaS----~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 441 LQFNHDAQILAIAS----RVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeCcchhhhhhhh----hccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99999999998663 3668899999998877776665443 468999999999999999999999999875
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-25 Score=177.00 Aligned_cols=278 Identities=19% Similarity=0.313 Sum_probs=219.3
Q ss_pred cccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEee-cC-CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 16 DYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQV-PG-EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 16 ~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
+..+....|+| ..++.....+.+..|+++.+.+.+...+ +. ....|.|++|.++|+ +++|..+|.|.||+..+.+
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~ 278 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNR 278 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCce
Confidence 34456677887 4677778889999999998877554433 22 246799999999996 8899999999999999888
Q ss_pred eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC-------------------------------------
Q 019847 92 LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN------------------------------------- 134 (335)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------------------------------------- 134 (335)
..+....|.+.|.+++... ++.+| +|+.|..|..||-.-.+
T Consensus 279 ~~k~~~aH~ggv~~L~~lr-~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~ 356 (626)
T KOG2106|consen 279 ISKQVHAHDGGVFSLCMLR-DGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTL 356 (626)
T ss_pred EEeEeeecCCceEEEEEec-CccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeee
Confidence 8888889999999999986 66655 49999999999832100
Q ss_pred --eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCC
Q 019847 135 --NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE 212 (335)
Q Consensus 135 --~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 212 (335)
.......+|......++.+|+.+.+++++.|+.+++|+-. +.... ..-..+..|+.|+|.| .++.|. .
T Consensus 357 ~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~-----k~~wt-~~~~d~~~~~~fhpsg--~va~Gt--~ 426 (626)
T KOG2106|consen 357 ENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH-----KLEWT-KIIEDPAECADFHPSG--VVAVGT--A 426 (626)
T ss_pred cCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCC-----ceeEE-EEecCceeEeeccCcc--eEEEee--c
Confidence 0011234677888899999999999999999999999911 12221 1135678999999999 566655 8
Q ss_pred CCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC-ceeeccc-CCCCceeEeEEc
Q 019847 213 DGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM-TKVGELQ-SSNSRILDLSQS 290 (335)
Q Consensus 213 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~-~~~~~i~~~~~~ 290 (335)
.|...+.|.++...+.......+++.+.|+|+|.+++.| +.|+.|++|.+... ....... .+.++|+.+.||
T Consensus 427 ~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvg------s~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS 500 (626)
T KOG2106|consen 427 TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVG------SHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWS 500 (626)
T ss_pred cceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEe------cCCCeEEEEEECCCCcEEEEeeeecCceeEEeeec
Confidence 999999999998777777778899999999999999998 78999999998653 3333332 344789999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCC
Q 019847 291 PDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 291 ~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
+|+++|.+-+.|-.|..|....
T Consensus 501 ~Ds~~~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 501 SDSQFLVSNSGDYEILYWKPSE 522 (626)
T ss_pred CCCceEEeccCceEEEEEcccc
Confidence 9999999999999999994443
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-29 Score=206.12 Aligned_cols=248 Identities=20% Similarity=0.403 Sum_probs=217.5
Q ss_pred cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCC
Q 019847 34 LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNG 113 (335)
Q Consensus 34 ~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 113 (335)
..-.+++|+.+ ++..|...+.++..-..++.+++|+.|..+.+|.+.....+..+.+|..+|.++.|++ ..
T Consensus 12 ~~t~Lr~~~~~--------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E 82 (825)
T KOG0267|consen 12 RATKLRVWDTR--------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SE 82 (825)
T ss_pred eeeccccccch--------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-ch
Confidence 34456677643 2336888889998877889999999999999999988877888999999999999999 99
Q ss_pred CEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCee
Q 019847 114 HILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVK 193 (335)
Q Consensus 114 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 193 (335)
.+|++|+.+|+|++||++..+ ..+.+.+|...+.++.|+|-+.++|.|+.|+.+++||++. ..+.+.+.+|...+.
T Consensus 83 ~LlaagsasgtiK~wDleeAk-~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk---~Gc~~~~~s~~~vv~ 158 (825)
T KOG0267|consen 83 RLLAAGSASGTIKVWDLEEAK-IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK---KGCSHTYKSHTRVVD 158 (825)
T ss_pred hhhcccccCCceeeeehhhhh-hhhhhhccccCcceeeeccceEEeccccccccceehhhhc---cCceeeecCCcceeE
Confidence 999999999999999999555 4667889999999999999999999999999999999886 356788888999999
Q ss_pred EEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc
Q 019847 194 ALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 272 (335)
.+.|+|+|. +++.++ +|..+++||+..|+....|+ +...+..+.|+|..-.++.| +.|+.+++||+++.+
T Consensus 159 ~l~lsP~Gr-~v~~g~--ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~G------s~d~tv~f~dletfe 229 (825)
T KOG0267|consen 159 VLRLSPDGR-WVASGG--EDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPG------SSDRTVRFWDLETFE 229 (825)
T ss_pred EEeecCCCc-eeeccC--CcceeeeecccccccccccccccccccccccCchhhhhccC------CCCceeeeeccceeE
Confidence 999999995 666665 79999999999999999998 56789999999999888887 789999999999999
Q ss_pred eeecccCCCCceeEeEEcCCCCEEEEEeCCC
Q 019847 273 KVGELQSSNSRILDLSQSPDGLTVATAGADE 303 (335)
Q Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 303 (335)
.+.........|.+.+|+|++..+++|..+.
T Consensus 230 ~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 230 VISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred EeeccCCccCCceeeeecCCceeeecCchhh
Confidence 9998888888999999999999988887653
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-27 Score=186.90 Aligned_cols=262 Identities=17% Similarity=0.300 Sum_probs=212.7
Q ss_pred ceeeeecCCc-eEEEe--cCCeEEEEEecCC--ceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeE
Q 019847 19 SKVIDWGRNN-VLAVA--LGPVLFLWKWENG--KVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV 93 (335)
Q Consensus 19 ~~~~~~~~~~-~~~~~--~~~~i~vw~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 93 (335)
+..+.|+... +++++ .|..+++|.-... +........+ +.-.|++......|+++|+..+.|+|||++...+.
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence 6789999865 44443 5778888874332 2222223232 24456666666789999999999999999977788
Q ss_pred eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCC-CEEEEEeCCCeEEEEE
Q 019847 94 RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG-NLLASGGDDNVVRIWE 172 (335)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd 172 (335)
+.++.|...|+++.|+. .+.+|++++..|.|.+..+.++........+....|.-+.|+|.. .+|.+++.+|.|.+||
T Consensus 115 r~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 115 RFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred hhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 88999999999999998 889999999999999999987765333323334567789999954 4667789999999999
Q ss_pred ccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeee
Q 019847 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGH 252 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (335)
+.... ....-...|..+...++|+|.++.|+++-+ .|..|.+||.+..+....+....+...++|.++|.+|++|
T Consensus 194 v~g~s--p~~~~~~~HsAP~~gicfspsne~l~vsVG--~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG- 268 (673)
T KOG4378|consen 194 VQGMS--PIFHASEAHSAPCRGICFSPSNEALLVSVG--YDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAG- 268 (673)
T ss_pred ccCCC--cccchhhhccCCcCcceecCCccceEEEec--ccceEEEeecccccccceeeecCCcceeeecCCceEEEee-
Confidence 88643 234455679999999999999999999987 9999999999998888888889999999999999999988
Q ss_pred eeeeecCCCeEEEEECCC-CceeecccCCCCceeEeEEcCCC
Q 019847 253 GFSASGDGNKLCLWKYPN-MTKVGELQSSNSRILDLSQSPDG 293 (335)
Q Consensus 253 ~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~ 293 (335)
...|.|..||++. ..++..+..|...|++++|-|..
T Consensus 269 -----~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 269 -----NSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred -----cCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 6799999999986 56788889999999999998764
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-27 Score=183.72 Aligned_cols=238 Identities=21% Similarity=0.354 Sum_probs=189.7
Q ss_pred ceEEEecCCeEEEEEecCC-ceeeEEe------------------ecCCCCCceEEEEcCC-CCEEEEEECCCcEEEEeC
Q 019847 28 NVLAVALGPVLFLWKWENG-KVKKLLQ------------------VPGEDDYPTSVSWSHD-AKTLAVGYMDSKLQLWDA 87 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~-~~~~~~~------------------~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~ 87 (335)
.++.++.+..|.|||++-. ...+.+. ..+|++.|..++|+.. .+.||+|+.|.+|++||+
T Consensus 194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~ 273 (463)
T KOG0270|consen 194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV 273 (463)
T ss_pred eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc
Confidence 4555668999999998621 1112222 2379999999999874 568899999999999999
Q ss_pred CCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCC
Q 019847 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDN 166 (335)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg 166 (335)
.++++...+..|.+.|.++.|+|..+..|++|+.|+++.+.|.+........+ ...+.|-.++|.| ....++++..||
T Consensus 274 ~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~tddG 352 (463)
T KOG0270|consen 274 DTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVSTDDG 352 (463)
T ss_pred CCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEecCCc
Confidence 99999999999999999999999999999999999999999999544322322 3577899999999 566788889999
Q ss_pred eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec---CCcEeEEEeCC
Q 019847 167 VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA---KAQICGLEWNR 243 (335)
Q Consensus 167 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~ 243 (335)
+++-+|+|... +++.++..|.++|.++++++.-+.++++++ .|+.+++|++..........+ -+...|.++.|
T Consensus 353 ~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s--~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~ 428 (463)
T KOG0270|consen 353 TVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTAS--TDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDP 428 (463)
T ss_pred eEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcceeecc--ccceEEEEeecCCCCcccccccccccceeecccCC
Confidence 99999999864 778899999999999999999999999987 999999999876544222221 12367777888
Q ss_pred CCceeeeeeeeeeecCCCeEEEEECCCCceee
Q 019847 244 HHKEILSGHGFSASGDGNKLCLWKYPNMTKVG 275 (335)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~ 275 (335)
+-..+++ .++..+.+++||+.+...+.
T Consensus 429 ~~a~~la-----~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 429 DVAFTLA-----FGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred CcceEEE-----ecCccceEEEeecccChhHH
Confidence 7665533 34777899999998766543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=184.33 Aligned_cols=281 Identities=16% Similarity=0.276 Sum_probs=219.4
Q ss_pred cceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee
Q 019847 18 YSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN 95 (335)
Q Consensus 18 ~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 95 (335)
.+.+++++. +.++++-.+|.|.+|++..+-.....-..+....|.+++|++ +..|++.+.+|.|.-||+.+++....
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~ 105 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYN 105 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEE
Confidence 467788876 344445589999999998865544333334567899999994 55688888999999999999999999
Q ss_pred ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE-EeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS-CIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
+....+.|++++.+| .+..++.|+.||.+..++...+..... .+...++.+.+++|+|++..+++|+.||.|++||..
T Consensus 106 ~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 106 IDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred ecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence 999999999999999 889999999999888887765543332 333456899999999999999999999999999988
Q ss_pred CCCccccee----ecc-CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCcee
Q 019847 175 KMSSSKSLH----RFT-DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEI 248 (335)
Q Consensus 175 ~~~~~~~~~----~~~-~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 248 (335)
.+....... .+. +...-|.++.|-.++ .+++|. ..|+|.+||...+.+++.+.. ...+.+++..+++.++
T Consensus 185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgD--S~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~v 260 (691)
T KOG2048|consen 185 SGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGD--SAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRV 260 (691)
T ss_pred CCceEEEeeecccccccCCceEEEEEEEeecC--cEEEec--CCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeE
Confidence 765533111 111 123347788888766 555543 899999999999999988875 5689999999999998
Q ss_pred eeeeeeeeecCCCeEEEEECCCCce----eecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTK----VGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
+++ +-|+.|..|...+... ......|...|.+++..++ .+++|+.|..+.+=....
T Consensus 261 fsa------Gvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 261 FSA------GVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EEc------cCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 877 6799988888766533 2334567788999999888 899999999988876655
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=183.97 Aligned_cols=291 Identities=15% Similarity=0.203 Sum_probs=222.0
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEE--ECCCcEEEEeCCCc--eeEeeecccccce
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVG--YMDSKLQLWDAETS--KLVRNLEGHHRRV 103 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~--~~~~~~~~~~~~v 103 (335)
.+.+++.+..+++||+...+....+.-......+.++.|+.... |+++ +.|..|++|.-... +....-+.....-
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~ 82 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNA 82 (673)
T ss_pred ceeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchH
Confidence 36777788899999998766544433222233488999987664 5444 46888999974322 1211111122244
Q ss_pred eEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCccccee
Q 019847 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLH 183 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 183 (335)
.|++... ...++++|+..+.|++||++ .+.+.+.+.+|...|+++.++....+||+++..|.|.+..+.+......
T Consensus 83 ~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~-- 158 (673)
T KOG4378|consen 83 FCVACAS-QSLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTT-- 158 (673)
T ss_pred HHHhhhh-cceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccc--
Confidence 4555544 55799999999999999999 6667888999999999999999999999999999999999887544333
Q ss_pred eccCC-CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee--cCCcEeEEEeCCCCceeeeeeeeeeecCC
Q 019847 184 RFTDH-CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID--AKAQICGLEWNRHHKEILSGHGFSASGDG 260 (335)
Q Consensus 184 ~~~~~-~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (335)
+... ...|.-+.++|..+.++.+++ .+|.|.+||.....++..+. +..+...++|+|....+++.. +-|
T Consensus 159 -f~~~sgqsvRll~ys~skr~lL~~as--d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV-----G~D 230 (673)
T KOG4378|consen 159 -FTIDSGQSVRLLRYSPSKRFLLSIAS--DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV-----GYD 230 (673)
T ss_pred -eecCCCCeEEEeecccccceeeEeec--cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe-----ccc
Confidence 3322 344668999999999999988 99999999999888776664 456889999999998886653 679
Q ss_pred CeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC-CCccccccccccceec
Q 019847 261 NKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGD-EDSVSHLAGLVSLKTS 332 (335)
Q Consensus 261 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~~~~~~i~~~~~~ 332 (335)
..|.+||.........+.. ..+.+.++|+++|.+|+.|+..|.|..||++..+.+ .....|...|.++.|.
T Consensus 231 kki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq 302 (673)
T KOG4378|consen 231 KKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQ 302 (673)
T ss_pred ceEEEeecccccccceeee-cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEee
Confidence 9999999987776665543 457899999999999999999999999999987654 4456888888888774
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=167.89 Aligned_cols=253 Identities=18% Similarity=0.346 Sum_probs=189.9
Q ss_pred cCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC----ceeEeeecccccceeEeeecC-CCCCEEEEeeCCCcEEEEe
Q 019847 55 PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET----SKLVRNLEGHHRRVATSSWNH-WNGHILTSGSKDKSIINHD 129 (335)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~~d 129 (335)
.+|.+-|.++.|.+.|+++|+|+.|++|+|||.+. ..+....+.|.+.|..+.|.+ .-|+.+++++.|+++.+|.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 47889999999999999999999999999999653 356677889999999999954 4689999999999999998
Q ss_pred cccCC--------eeeEEeecCCCCEEEEEeec--CCCEEEEEeCCCeEEEEEccCCCc---ccceeecc-------CCC
Q 019847 130 VRVSN--------NVTSCIKAHSGEVCGLKWSN--EGNLLASGGDDNVVRIWERSKMSS---SKSLHRFT-------DHC 189 (335)
Q Consensus 130 ~~~~~--------~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~-------~~~ 189 (335)
-.... .....+......|+.+.|.| -|-.||+++.||.+|||+.-.... ......+. .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 63111 12344566778999999999 577999999999999998654322 11222222 356
Q ss_pred CCeeEEEecCCC--CcEEEEecCCCC-----CeEEEEECCCCc----eEEEee-cCCcEeEEEeCCCCceeeeeeeeeee
Q 019847 190 GGVKALAWSPHQ--VNVLATGGGRED-----GCIKIWNVQKGT----CIHGID-AKAQICGLEWNRHHKEILSGHGFSAS 257 (335)
Q Consensus 190 ~~v~~~~~~~~~--~~~~~~~~g~~d-----~~i~i~d~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (335)
.+..|+.|+|.. ..+++.|+ .+ +.++||....+. .+.++. +..+|..++|.|+-..-. ..++++
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs--~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y--~~lAvA 245 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGS--DEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSY--HLLAVA 245 (361)
T ss_pred CcceEEeeccccccCceEEEEc--ccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCce--eeEEEe
Confidence 678899999753 34777775 22 378888764432 223333 456899999999843211 113344
Q ss_pred cCCCeEEEEECCC--------------------CceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 258 GDGNKLCLWKYPN--------------------MTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 258 ~~~~~i~i~d~~~--------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
+.|| |+||.++. -+.+..+..|.+.|..+.|+-.|..|++.|.||.||+|...-
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 7788 99999873 123455778999999999999999999999999999998654
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-25 Score=176.69 Aligned_cols=298 Identities=17% Similarity=0.275 Sum_probs=224.7
Q ss_pred ccccceeeeecC---CceEEEe---cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC
Q 019847 15 EDYYSKVIDWGR---NNVLAVA---LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE 88 (335)
Q Consensus 15 ~~~~~~~~~~~~---~~~~~~~---~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 88 (335)
.+--+.|++|++ +.++.+- .+..+.+||++.+..... ....++.|....|+|.+..++.....|.+..|+.+
T Consensus 153 f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~--vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~ 230 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP--VKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLR 230 (626)
T ss_pred ccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc--ceeccceEEEEEeccCCCcEEEEeCCceEEEEEcc
Confidence 345578888887 3455443 445789999987764332 23456778999999976666666668899999999
Q ss_pred CceeEee---ecc-cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC
Q 019847 89 TSKLVRN---LEG-HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD 164 (335)
Q Consensus 89 ~~~~~~~---~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (335)
.+.+.+. ++. ...-|.|++|.+ +++ +++|..+|.|.+|+..+.+- .+....|.+.|.+++...+|.+|- |+.
T Consensus 231 ~~~l~k~~~~fek~ekk~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~~~-~k~~~aH~ggv~~L~~lr~GtllS-GgK 306 (626)
T KOG2106|consen 231 GGSLVKRQGIFEKREKKFVLCVTFLE-NGD-VITGDSGGNILIWSKGTNRI-SKQVHAHDGGVFSLCMLRDGTLLS-GGK 306 (626)
T ss_pred CCceEEEeeccccccceEEEEEEEcC-CCC-EEeecCCceEEEEeCCCceE-EeEeeecCCceEEEEEecCccEee-cCc
Confidence 8866554 332 236799999997 554 77999999999999975554 444449999999999999987555 999
Q ss_pred CCeEEEEEccCCCcccc--------------------------------------eeeccCCCCCeeEEEecCCCCcEEE
Q 019847 165 DNVVRIWERSKMSSSKS--------------------------------------LHRFTDHCGGVKALAWSPHQVNVLA 206 (335)
Q Consensus 165 dg~i~iwd~~~~~~~~~--------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~~ 206 (335)
|..|..||-. ....+. .....+|......++.+|+...+++
T Consensus 307 DRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T 385 (626)
T KOG2106|consen 307 DRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLT 385 (626)
T ss_pred cceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheee
Confidence 9999999821 110000 0122457778889999999876666
Q ss_pred EecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeE
Q 019847 207 TGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILD 286 (335)
Q Consensus 207 ~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 286 (335)
++ .|+.+++|+ ..+++.+.....+..++.|+|.| .++.| ...|...+.|.++...+..-.. .++++.
T Consensus 386 ~g---qdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~G------t~~G~w~V~d~e~~~lv~~~~d-~~~ls~ 452 (626)
T KOG2106|consen 386 CG---QDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVG------TATGRWFVLDTETQDLVTIHTD-NEQLSV 452 (626)
T ss_pred cc---CcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEe------eccceEEEEecccceeEEEEec-CCceEE
Confidence 55 899999999 66777777788999999999999 77777 5689999999999666655555 889999
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcc--ccccccccceec
Q 019847 287 LSQSPDGLTVATAGADETIRFWEAFGPSGDEDSV--SHLAGLVSLKTS 332 (335)
Q Consensus 287 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~i~~~~~~ 332 (335)
++|+|+|.+||.|+.|+.|++|.++......... -+.+.|..|.++
T Consensus 453 v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS 500 (626)
T KOG2106|consen 453 VRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWS 500 (626)
T ss_pred EEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeec
Confidence 9999999999999999999999998876554332 223566666665
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=181.86 Aligned_cols=268 Identities=19% Similarity=0.259 Sum_probs=205.9
Q ss_pred ceEEEe-cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEe
Q 019847 28 NVLAVA-LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATS 106 (335)
Q Consensus 28 ~~~~~~-~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 106 (335)
.++++. ....+.+|.+....... ...--.++|.+++-+|+|.+|+.|+..|.|++|.+.+|+++..+..|-..|+++
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~--q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL 129 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVV--QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCL 129 (476)
T ss_pred heeeecccCccccccccCchhhhh--hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEE
Confidence 444444 34478888876544322 111235679999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCEEEEeeCCCcEEEEeccc--------CCeeeEEeecCCCCEEEEEeecC--CCEEEEEeCCCeEEEEEccCC
Q 019847 107 SWNHWNGHILTSGSKDKSIINHDVRV--------SNNVTSCIKAHSGEVCGLKWSNE--GNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 107 ~~~~~~~~~l~~~~~dg~i~~~d~~~--------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~ 176 (335)
.|+. ++.+|++|+.||.|.+|.+.. ...+...+..|.-+|+++...+. ..++++++.|.++++||+..+
T Consensus 130 ~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 130 KFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred EEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence 9999 999999999999999998742 22356778899999999998764 468999999999999998875
Q ss_pred CcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc----------------eEEEeec-C--CcEe
Q 019847 177 SSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT----------------CIHGIDA-K--AQIC 237 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----------------~~~~~~~-~--~~~~ 237 (335)
. .+.++. ....+.+++.+|-+..++ +|+ .+|.|.+.++.+.. .+..+.+ . .+|+
T Consensus 209 ~---LLlti~-fp~si~av~lDpae~~~y-iGt--~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT 281 (476)
T KOG0646|consen 209 V---LLLTIT-FPSSIKAVALDPAERVVY-IGT--EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT 281 (476)
T ss_pred e---eeEEEe-cCCcceeEEEcccccEEE-ecC--CcceEEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence 3 344333 467799999999886544 444 89999998875432 1222222 2 3799
Q ss_pred EEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEE-EeCCCcEEEEecC
Q 019847 238 GLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVAT-AGADETIRFWEAF 311 (335)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~v~iw~~~ 311 (335)
|++.+-+|..+++| +.||.++|||+.+.++++++....++|+.+.+.|-.+-.+. -+....+-.|++.
T Consensus 282 cLais~DgtlLlSG------d~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 282 CLAISTDGTLLLSG------DEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred EEEEecCccEEEee------CCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhh
Confidence 99999999999998 88999999999999999998877889999998664332222 2233344445444
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-28 Score=200.65 Aligned_cols=228 Identities=25% Similarity=0.464 Sum_probs=196.1
Q ss_pred ccccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
+...+.++..-. ..++.++.+..+.+|.+.... ....+.+|..+|.++.|++...+|++|+.+|+|++||++.++.
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~--~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~ 104 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN--AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKI 104 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCc--hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhh
Confidence 344444544322 345566678888899876544 4556789999999999999999999999999999999999999
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 172 (335)
++.+.+|...+..+.|+| -+.+++.|+.|+.+++||++..++ ...+.+|...+..++|+|+|++++.+++|..+++||
T Consensus 105 vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc-~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d 182 (825)
T KOG0267|consen 105 VRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGC-SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWD 182 (825)
T ss_pred hhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCc-eeeecCCcceeEEEeecCCCceeeccCCcceeeeec
Confidence 999999999999999999 999999999999999999996554 666778999999999999999999999999999999
Q ss_pred ccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeee
Q 019847 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 251 (335)
+.. ++.+..|..|.+.+..+.|+|.. .+++.|+ .|+++++||+++.+.+...+. ...+.+..|+|+++.+++|
T Consensus 183 ~~a---gk~~~ef~~~e~~v~sle~hp~e-~Lla~Gs--~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 183 LTA---GKLSKEFKSHEGKVQSLEFHPLE-VLLAPGS--SDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred ccc---cccccccccccccccccccCchh-hhhccCC--CCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecC
Confidence 765 56688889999999999999986 6888877 999999999999888877665 4579999999999999887
Q ss_pred e
Q 019847 252 H 252 (335)
Q Consensus 252 ~ 252 (335)
.
T Consensus 257 ~ 257 (825)
T KOG0267|consen 257 E 257 (825)
T ss_pred c
Confidence 3
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-25 Score=175.02 Aligned_cols=251 Identities=27% Similarity=0.468 Sum_probs=193.6
Q ss_pred CCceEEEEcC-------CCCEEEEEECCCcEEEEeCCCcee---------------------EeeecccccceeEeeecC
Q 019847 59 DYPTSVSWSH-------DAKTLAVGYMDSKLQLWDAETSKL---------------------VRNLEGHHRRVATSSWNH 110 (335)
Q Consensus 59 ~~v~~~~~~~-------~~~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~~~~v~~~~~~~ 110 (335)
....|++|.. .|+|+|.|+.|..|.|||+.-... -..-.+|+..|.++.|+.
T Consensus 174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~ 253 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR 253 (463)
T ss_pred CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc
Confidence 3446777743 368999999999999999752110 011236888999999998
Q ss_pred CCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCC
Q 019847 111 WNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHC 189 (335)
Q Consensus 111 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 189 (335)
...+.|++|+.|.+|++||+.++++ ...+..|.+.|.++.|+| ...+|++|+.|++|.+.|.|........-. -.
T Consensus 254 ~~~nVLaSgsaD~TV~lWD~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk---~~ 329 (463)
T KOG0270|consen 254 NFRNVLASGSADKTVKLWDVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK---FD 329 (463)
T ss_pred ccceeEEecCCCceEEEEEcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE---ec
Confidence 7889999999999999999997775 666778999999999999 678999999999999999996433322222 35
Q ss_pred CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-ceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEE
Q 019847 190 GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-TCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK 267 (335)
Q Consensus 190 ~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 267 (335)
+.|-.++|.|.....+.++. .||+++-+|+|+. +++.++.. ..+|.++++++....+++. ++.++.+++|+
T Consensus 330 g~VEkv~w~~~se~~f~~~t--ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t-----~s~d~~Vklw~ 402 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVST--DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLST-----ASTDKVVKLWK 402 (463)
T ss_pred cceEEEEecCCCceeEEEec--CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceee-----ccccceEEEEe
Confidence 67999999999988888876 9999999999986 88888875 4689999999988776543 47899999999
Q ss_pred CCCCce--eecccCCCCceeEeEEcCCC-CEEEEEeCCCcEEEEecCCCCCCCCcc
Q 019847 268 YPNMTK--VGELQSSNSRILDLSQSPDG-LTVATAGADETIRFWEAFGPSGDEDSV 320 (335)
Q Consensus 268 ~~~~~~--~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~ 320 (335)
+..-.+ +..-.-..+...|+++.|+- -.|+.|+..+.+++||+.......+.+
T Consensus 403 ~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF 458 (463)
T KOG0270|consen 403 FDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAF 458 (463)
T ss_pred ecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHHhh
Confidence 865443 22211122346677788875 456778888889999999876655443
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-24 Score=174.34 Aligned_cols=258 Identities=12% Similarity=0.123 Sum_probs=188.1
Q ss_pred ceeeeecCC--ceEE-EecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEE-ECCCcEEEEeCCCceeEe
Q 019847 19 SKVIDWGRN--NVLA-VALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVG-YMDSKLQLWDAETSKLVR 94 (335)
Q Consensus 19 ~~~~~~~~~--~~~~-~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~ 94 (335)
+..++|+++ .+++ ++.++.|++||..+++....+ ..+. .+..++|+|+++.++++ ..++.+++||+.+++.+.
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~ 109 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL--PSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLA 109 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec--cCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe
Confidence 456888875 3433 456789999999988765433 3333 35678999999987665 468999999999988777
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCCC-cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEE-eCCCeEEEEE
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKDK-SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASG-GDDNVVRIWE 172 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd 172 (335)
.+.. ...+..++|+| ++..++++..++ .+.+||.++........ .......++|+|++++|+++ ..++.|++||
T Consensus 110 ~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d 185 (300)
T TIGR03866 110 EIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTADGKELWVSSEIGGTVSVID 185 (300)
T ss_pred EeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEE
Confidence 7653 34568899999 999999888775 46778987654433222 23345789999999988655 4689999999
Q ss_pred ccCCCcccceeec--cCC--CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCcee
Q 019847 173 RSKMSSSKSLHRF--TDH--CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEI 248 (335)
Q Consensus 173 ~~~~~~~~~~~~~--~~~--~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (335)
+++......+... ..+ ......++|+|+++.++++.+ .++.+.+||+++++.+..+.....+.++.|+|+++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l 263 (300)
T TIGR03866 186 VATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG--PANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYL 263 (300)
T ss_pred cCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC--CCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEE
Confidence 8875432222110 001 112346889999987666554 5678999999999888777667789999999999998
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcC
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSP 291 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 291 (335)
+++. ..++.|++||+.+++.+..++.. ...+.++++|
T Consensus 264 ~~~~-----~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 264 LTTN-----GVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEc-----CCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 7652 45899999999999999888754 4458888765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-26 Score=187.03 Aligned_cols=239 Identities=20% Similarity=0.375 Sum_probs=200.8
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEe--eecccccceeE-eeecCCCCCEEEEeeCCCcEEE
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR--NLEGHHRRVAT-SSWNHWNGHILTSGSKDKSIIN 127 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~~ 127 (335)
...+.+|...|..++..+.. .+++++.||++++|+-...+.+. .+.+|.+-|.. ++|.+.++..+++|+.|..|.+
T Consensus 7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence 34567999999999877554 78999999999999976555443 46667777776 8887756778999999999999
Q ss_pred EecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEE
Q 019847 128 HDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207 (335)
Q Consensus 128 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 207 (335)
|...... +...+.+|+..|.+++...++. +++||.|.++++|-+.. ....+.+|+..|.++..-|++ .+++
T Consensus 86 ~~~~~~~-P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~-----l~~~l~gH~asVWAv~~l~e~--~~vT 156 (745)
T KOG0301|consen 86 FKLSQAE-PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE-----LVYSLQGHTASVWAVASLPEN--TYVT 156 (745)
T ss_pred EecCCCC-chhhhhccccceeeeecCCcCc-eEecccccceEEecchh-----hhcccCCcchheeeeeecCCC--cEEe
Confidence 9998555 4777899999999999888877 99999999999998654 345588999999999999987 5555
Q ss_pred ecCCCCCeEEEEECCCCceEEEeecCC-cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeE
Q 019847 208 GGGREDGCIKIWNVQKGTCIHGIDAKA-QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILD 286 (335)
Q Consensus 208 ~~g~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 286 (335)
|+ .|.+|++|.- ++.++++..|. -+..+++-+++.++-+ +.||.|+.|++ +++.+.++.+|+.-|.+
T Consensus 157 gs--aDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flSc-------sNDg~Ir~w~~-~ge~l~~~~ghtn~vYs 224 (745)
T KOG0301|consen 157 GS--ADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSC-------SNDGSIRLWDL-DGEVLLEMHGHTNFVYS 224 (745)
T ss_pred cc--CcceeeeccC--CchhhhhccchhheeeeEEecCCCeEee-------cCCceEEEEec-cCceeeeeeccceEEEE
Confidence 55 8999999975 77888888765 5888988888765533 67999999998 88999999999999999
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 287 LSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 287 ~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
++...++..++++++|++++||+..
T Consensus 225 is~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 225 ISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEecCCCCeEEEecCCceEEEeecC
Confidence 9988888899999999999999988
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=170.37 Aligned_cols=284 Identities=20% Similarity=0.296 Sum_probs=209.3
Q ss_pred ccceeeeecC------CceEEEecCCeEEEEEecCCc---eeeEEeecCCCCCceEEEEcCC----CCEEEEEECCCcEE
Q 019847 17 YYSKVIDWGR------NNVLAVALGPVLFLWKWENGK---VKKLLQVPGEDDYPTSVSWSHD----AKTLAVGYMDSKLQ 83 (335)
Q Consensus 17 ~~~~~~~~~~------~~~~~~~~~~~i~vw~~~~~~---~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~ 83 (335)
..+..++|+. ..+++..+.+.+.+|+....- ..+...-+.|....+.++|+-+ ..++|+|+.-|.|+
T Consensus 39 ~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIr 118 (385)
T KOG1034|consen 39 KPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIR 118 (385)
T ss_pred CccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEE
Confidence 3444455552 367777788899999976543 2233333457788888999764 45889999999999
Q ss_pred EEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE--EeecCCCCEEEEEeecCCCEEEE
Q 019847 84 LWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS--CIKAHSGEVCGLKWSNEGNLLAS 161 (335)
Q Consensus 84 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~ 161 (335)
|.|+.+++....+.+|...|..+.+.|.+.+++++++.|..|++|++++...+.. -..+|...|.++.|++++.++++
T Consensus 119 Vid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~S 198 (385)
T KOG1034|consen 119 VIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIAS 198 (385)
T ss_pred EEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeec
Confidence 9999999999999999999999999998899999999999999999997765432 24579999999999999999999
Q ss_pred EeCCCeEEEEEccCCCcccce-------------------------eeccCCCCCeeEEEecCCCCcEEEEecCCCCCeE
Q 019847 162 GGDDNVVRIWERSKMSSSKSL-------------------------HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCI 216 (335)
Q Consensus 162 ~~~dg~i~iwd~~~~~~~~~~-------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 216 (335)
++.|.++++|++...+-...+ .+-.-|...|-|+.|-- ..++.-+ -++.|
T Consensus 199 cGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilSks---cenaI 273 (385)
T KOG1034|consen 199 CGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILSKS---CENAI 273 (385)
T ss_pred cCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--hheeecc---cCceE
Confidence 999999999998732211100 01123666677777764 3444444 57899
Q ss_pred EEEEC-CCCceEEEe-------------ecC-CcE--eEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceee--cc
Q 019847 217 KIWNV-QKGTCIHGI-------------DAK-AQI--CGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVG--EL 277 (335)
Q Consensus 217 ~i~d~-~~~~~~~~~-------------~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~--~~ 277 (335)
..|.. +-.+.+... +-+ ..+ ...+|+|.++.++.| ...|.+.+||++..++.. ++
T Consensus 274 ~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g------nq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 274 VCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG------NQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred EEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc------cCCCcEEEEECCCCCCccCceE
Confidence 99987 222221111 111 122 335677888888887 679999999999877632 12
Q ss_pred c--CCCCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 278 Q--SSNSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 278 ~--~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
. .....|...+|+.|+.+|+....|+.|--||.-
T Consensus 348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 1 123468999999999999999999999988853
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=170.32 Aligned_cols=275 Identities=16% Similarity=0.259 Sum_probs=198.9
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC--CCCEEEEEECCCcEEEEeCCCceeEeee--cccc-cc
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH--DAKTLAVGYMDSKLQLWDAETSKLVRNL--EGHH-RR 102 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~-~~ 102 (335)
.++++.+.|.|++||..+++.... +.++...++.++|.. ....+.+++.||+|++||++.......+ ..+. .+
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~--fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE--FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe--ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 466667899999999999887554 457788888899977 4667899999999999999876554443 3444 45
Q ss_pred eeEeeecCCCCCEEEEee----CCCcEEEEecccCCe-eeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCC
Q 019847 103 VATSSWNHWNGHILTSGS----KDKSIINHDVRVSNN-VTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 103 v~~~~~~~~~~~~l~~~~----~dg~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 176 (335)
..+++-.. +++++++|. .+-.+.+||++..++ +......|...|++++|+| +.++|++|+.||.|.+||++..
T Consensus 120 f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 120 FICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred ceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 66666665 677888875 456899999998877 4455667999999999999 7789999999999999999877
Q ss_pred CcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC-------------cEeEEEeCC
Q 019847 177 SSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA-------------QICGLEWNR 243 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-------------~~~~~~~~~ 243 (335)
.....+.....+...|.++.|..++-.-+.+-+ ......+|+++.+.+...++.+. .+... .+|
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT--H~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~ 275 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT--HMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSP 275 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEEEE--ccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccC
Confidence 655556555668888999999988732233333 79999999999988665554321 11111 122
Q ss_pred CC-ceeeeeeeeeeecCCCeEEEEEC---CC---CceeecccC-CCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 244 HH-KEILSGHGFSASGDGNKLCLWKY---PN---MTKVGELQS-SNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 244 ~~-~~~~~~~~~~~~~~~~~i~i~d~---~~---~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
.+ ...+.+ ++.-+...++-+ .+ .+.+..+++ |..-|+++.|...+.++.||++||.+.+|.....
T Consensus 276 ~~~~~~~l~-----g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 276 GDKDTCALA-----GTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVEDA 348 (376)
T ss_pred CCcceEEEe-----ccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCCc
Confidence 22 222222 232444444433 22 344555665 6667889999988999999999999999996443
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-26 Score=182.30 Aligned_cols=240 Identities=19% Similarity=0.296 Sum_probs=202.6
Q ss_pred CcccccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc
Q 019847 13 LMEDYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 13 ~~~~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
+..+-++.++...+ ..+++++.-.++.|||+......-..++....-..++++.+||.+..+++..||.|.|||+.+.
T Consensus 462 l~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq 541 (705)
T KOG0639|consen 462 LNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ 541 (705)
T ss_pred cCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc
Confidence 33455566655555 4688888889999999987665444444444556788999999999999999999999999999
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
..++.|++|.+.+.|+..++ ++..|.+|+-|++|+-||++++.++.+ ..+.+.|.++..+|++.++++|-+++.+.+
T Consensus 542 ~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqq--hdF~SQIfSLg~cP~~dWlavGMens~vev 618 (705)
T KOG0639|consen 542 TLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQ--HDFSSQIFSLGYCPTGDWLAVGMENSNVEV 618 (705)
T ss_pred eeeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhh--hhhhhhheecccCCCccceeeecccCcEEE
Confidence 99999999999999999999 999999999999999999998776443 235678999999999999999999999999
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeee
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS 250 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (335)
......+ ...+..|.+-|.++.|.+.|++++.+| .|+.+..|...-|..+...+....|.++.++.+.+++++
T Consensus 619 lh~skp~----kyqlhlheScVLSlKFa~cGkwfvStG---kDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVT 691 (705)
T KOG0639|consen 619 LHTSKPE----KYQLHLHESCVLSLKFAYCGKWFVSTG---KDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVT 691 (705)
T ss_pred EecCCcc----ceeecccccEEEEEEecccCceeeecC---chhhhhhccCccccceeeccccCcceeeeeccCceEEEe
Confidence 8866533 334455889999999999998877777 799999999999999998888999999999999999999
Q ss_pred eeeeeeecCCCeEEEEEC
Q 019847 251 GHGFSASGDGNKLCLWKY 268 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d~ 268 (335)
| +.|..-.+|.+
T Consensus 692 G------SGdkkATVYeV 703 (705)
T KOG0639|consen 692 G------SGDKKATVYEV 703 (705)
T ss_pred c------CCCcceEEEEE
Confidence 8 55777777764
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=172.11 Aligned_cols=210 Identities=25% Similarity=0.433 Sum_probs=171.2
Q ss_pred ccccceeEeeecCC-CCCEEEEeeCCCcEEEEecccC---------------CeeeEEeecCCCCEEEEEeec-CCCEEE
Q 019847 98 GHHRRVATSSWNHW-NGHILTSGSKDKSIINHDVRVS---------------NNVTSCIKAHSGEVCGLKWSN-EGNLLA 160 (335)
Q Consensus 98 ~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~---------------~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 160 (335)
.|.+.+..+.-.+. +..+.++=+..|.|+||++... ...+..+.+|...=..++||| ....|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 46677777776663 3455566678899999998531 223555778888889999999 334588
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC---ceEEEeecCCcEe
Q 019847 161 SGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG---TCIHGIDAKAQIC 237 (335)
Q Consensus 161 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~---~~~~~~~~~~~~~ 237 (335)
+|.--+.|++|...++.-..-...+.+|+..|..++|+|....++++|+ -||+|+|||++.+ .++..-.++..|+
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS--~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCS--CDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeee--cCceEEEEEecCCCccceeEeeccCCcee
Confidence 8888889999998875433344567789999999999999999999998 9999999999988 4555655677999
Q ss_pred EEEeCCCCceeeeeeeeeeecCCCeEEEEECCC---CceeecccCCCCceeEeEEcCC-CCEEEEEeCCCcEEEEecCCC
Q 019847 238 GLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN---MTKVGELQSSNSRILDLSQSPD-GLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~ 313 (335)
.+.|+....+|++| ++||.++|||+++ ++++.+++.|..+|+++.|+|. ...|++++.|..|.+||+.-.
T Consensus 307 VISWnr~~~lLasG------~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 307 VISWNRREPLLASG------GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eEEccCCcceeeec------CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 99999999988877 8999999999976 6788999999999999999996 467888899999999999876
Q ss_pred CC
Q 019847 314 SG 315 (335)
Q Consensus 314 ~~ 315 (335)
+.
T Consensus 381 ~D 382 (440)
T KOG0302|consen 381 AD 382 (440)
T ss_pred CC
Confidence 54
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-24 Score=175.68 Aligned_cols=244 Identities=22% Similarity=0.373 Sum_probs=196.7
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee-Eeeecc-cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL-VRNLEG-HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN 135 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 135 (335)
..+|.++||+.+.+.||.+-.+|.|.+|++..+=. ...+.+ ....|.+++|+ ++..|++.+.+|.|.-||+.+.++
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc--cCCeEEeecCCceEEEEecccCce
Confidence 56799999999999999999999999999987532 233443 45689999998 577888999999999999997776
Q ss_pred eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe
Q 019847 136 VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215 (335)
Q Consensus 136 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 215 (335)
........+.|++++.+|.+..++.|+.||.+..++.... .......+...++.+.++.|+|++..++. | +.||.
T Consensus 103 -~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~-~I~~~r~l~rq~sRvLslsw~~~~~~i~~-G--s~Dg~ 177 (691)
T KOG2048|consen 103 -KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD-KITYKRSLMRQKSRVLSLSWNPTGTKIAG-G--SIDGV 177 (691)
T ss_pred -eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc-eEEEEeecccccceEEEEEecCCccEEEe-c--ccCce
Confidence 4446677899999999999999999999997777776542 22223344455789999999999965554 4 48999
Q ss_pred EEEEECCCCceEEEeec-----C----CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeE
Q 019847 216 IKIWNVQKGTCIHGIDA-----K----AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILD 286 (335)
Q Consensus 216 i~i~d~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 286 (335)
|++||..++..+..... . .-+.++.+-.++ .+++| ...|.|.+||...+.+++.+..|.+.|.+
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sg------DS~G~V~FWd~~~gTLiqS~~~h~adVl~ 250 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASG------DSAGTVTFWDSIFGTLIQSHSCHDADVLA 250 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEe------cCCceEEEEcccCcchhhhhhhhhcceeE
Confidence 99999999988773322 1 135666666444 34444 67899999999999999999999999999
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 019847 287 LSQSPDGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 287 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
++..+++.++++++.|+.|.-|...+.+.
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 99999999999999999999998887754
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-24 Score=181.40 Aligned_cols=278 Identities=20% Similarity=0.306 Sum_probs=204.8
Q ss_pred ccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCE-EEEEECCCcEEEEeCCCceeE
Q 019847 17 YYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKT-LAVGYMDSKLQLWDAETSKLV 93 (335)
Q Consensus 17 ~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~ 93 (335)
..++++.-+| +-++.+..+|+|.++|++.++.+..++. ..+.|+.++|.-||+. +|+|+..|.+.+||++..+..
T Consensus 203 s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~--d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~ 280 (910)
T KOG1539|consen 203 SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQ--DWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI 280 (910)
T ss_pred cceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEc--cccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee
Confidence 4577787777 4455566899999999999997655542 2589999999999875 566777899999999876544
Q ss_pred eeec-ccccceeEeeecCCCCCEEEEeeCCCcEEE---------------------------------------------
Q 019847 94 RNLE-GHHRRVATSSWNHWNGHILTSGSKDKSIIN--------------------------------------------- 127 (335)
Q Consensus 94 ~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~--------------------------------------------- 127 (335)
..+. .|.+.+....|.| ....+++++.|+.+++
T Consensus 281 ~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~ 359 (910)
T KOG1539|consen 281 NVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTL 359 (910)
T ss_pred eeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcch
Confidence 4333 3334444444443 3333333333333332
Q ss_pred --------------------------------------------------------------------------------
Q 019847 128 -------------------------------------------------------------------------------- 127 (335)
Q Consensus 128 -------------------------------------------------------------------------------- 127 (335)
T Consensus 360 r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L 439 (910)
T KOG1539|consen 360 RSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL 439 (910)
T ss_pred hhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe
Confidence
Q ss_pred -----------------------------------EecccCCeeeEEe---ecCCCCEEEEEeecCCCEEEEEeCCCeEE
Q 019847 128 -----------------------------------HDVRVSNNVTSCI---KAHSGEVCGLKWSNEGNLLASGGDDNVVR 169 (335)
Q Consensus 128 -----------------------------------~d~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 169 (335)
|++..+-. ...+ ..|.++|+.++...-++.+++++.+|.++
T Consensus 440 ~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~-r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilk 518 (910)
T KOG1539|consen 440 DPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH-RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILK 518 (910)
T ss_pred cCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee-ecccccCccccCceeEEEecCCCceEEEccCcceEE
Confidence 22221111 1222 46899999999998889999999999999
Q ss_pred EEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee-cCCcEeEEEeCCCCcee
Q 019847 170 IWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID-AKAQICGLEWNRHHKEI 248 (335)
Q Consensus 170 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 248 (335)
+||..+.. .+..+. -..++.++..+.... +++.+. .|-.|+++|..+.+.++.+. +.+.+++++|||+|+++
T Consensus 519 fw~f~~k~---l~~~l~-l~~~~~~iv~hr~s~-l~a~~~--ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWl 591 (910)
T KOG1539|consen 519 FWDFKKKV---LKKSLR-LGSSITGIVYHRVSD-LLAIAL--DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWL 591 (910)
T ss_pred EEecCCcc---eeeeec-cCCCcceeeeeehhh-hhhhhc--CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEE
Confidence 99987643 233332 345677888887775 444444 79999999999999999998 46789999999999999
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC-CcEEEEecCC
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD-ETIRFWEAFG 312 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~v~iw~~~~ 312 (335)
++. +.|++|++||+.++.++-.+.- ..+++++.|+|+|.+|||...| .-|++|.-..
T Consensus 592 isa------smD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 592 ISA------SMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred EEe------ecCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 988 7799999999999999877643 4578999999999999999988 6699996443
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-25 Score=173.80 Aligned_cols=254 Identities=16% Similarity=0.176 Sum_probs=199.9
Q ss_pred CCCCCceEEEEcCCC--CEEEEEECCCcEEEEeCCCc----eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEe
Q 019847 56 GEDDYPTSVSWSHDA--KTLAVGYMDSKLQLWDAETS----KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHD 129 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 129 (335)
-+...|++++|+|.. +++|+|..-|.|-+||+.+. .-+..+..|..+|.++.|+|.+...+++.+.||+|+.-|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence 467899999999954 58889999999999999533 335567889999999999999999999999999999999
Q ss_pred cccCCe-eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEe
Q 019847 130 VRVSNN-VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 130 ~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
++.... .+..+......+..+.|+.+...++.+..=|...+||++.... ....+.-|...|..++++|-.+++++++
T Consensus 264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s--~~~~~~lh~kKI~sv~~NP~~p~~laT~ 341 (498)
T KOG4328|consen 264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS--EYENLRLHKKKITSVALNPVCPWFLATA 341 (498)
T ss_pred ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc--cchhhhhhhcccceeecCCCCchheeec
Confidence 975432 1111222445677888988888888888778999999998643 3445556888999999999999999999
Q ss_pred cCCCCCeEEEEECCCCc-----eEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC----CCceeecccC
Q 019847 209 GGREDGCIKIWNVQKGT-----CIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP----NMTKVGELQS 279 (335)
Q Consensus 209 ~g~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~----~~~~~~~~~~ 279 (335)
+ .|++.+|||++.-. .+..+++...|.+..|||.+..+++. +.|..|+|||.. ...+..++..
T Consensus 342 s--~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT------~~D~~IRv~dss~~sa~~~p~~~I~H 413 (498)
T KOG4328|consen 342 S--LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTT------CQDNEIRVFDSSCISAKDEPLGTIPH 413 (498)
T ss_pred c--cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEee------ccCCceEEeecccccccCCccceeec
Confidence 8 99999999998632 25667778899999999999888776 679999999983 3444444431
Q ss_pred ---CCCc--eeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc
Q 019847 280 ---SNSR--ILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 280 ---~~~~--i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 319 (335)
+... .....|.|+..++++|-.-..|-|+|-..++...+.
T Consensus 414 n~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el 458 (498)
T KOG4328|consen 414 NNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL 458 (498)
T ss_pred cCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec
Confidence 1112 345689999999999998888999998888755443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=177.42 Aligned_cols=245 Identities=16% Similarity=0.273 Sum_probs=196.7
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEec
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 130 (335)
.+.+.+|++.|.++...|.|.+|++|+.||+|+||.+.+|++++.+. ..+.|.+++|+|....-+++......+.+.+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 34567999999999999999999999999999999999999999987 56799999999954444444444444444443
Q ss_pred ccC------------------------------------CeeeEEeecCCCCEEEEEeecCCCEEEEEeCC---CeEEEE
Q 019847 131 RVS------------------------------------NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD---NVVRIW 171 (335)
Q Consensus 131 ~~~------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iw 171 (335)
.-+ ..-+.....|...|..+.|+..|.||++...+ ..|.|+
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 111 00112334588899999999999999998654 478999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILS 250 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (335)
++..... ...|....+.|.++.|+|...+++++. ...|++||+..++.++.+... ..+..++.+|.|..++.
T Consensus 552 QLSK~~s---Q~PF~kskG~vq~v~FHPs~p~lfVaT----q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 552 QLSKRKS---QSPFRKSKGLVQRVKFHPSKPYLFVAT----QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred ecccccc---cCchhhcCCceeEEEecCCCceEEEEe----ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 9876443 334444567799999999998888874 789999999988877776554 46889999999999998
Q ss_pred eeeeeeecCCCeEEEEECCCC-ceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 251 GHGFSASGDGNKLCLWKYPNM-TKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
| +.|+.+..||+.-. ++.+++..|...+++++|++.-.++++|+.||.+.|+-
T Consensus 625 g------s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 625 G------SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred e------cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 8 67999999999754 67788899999999999999999999999999999884
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=195.78 Aligned_cols=270 Identities=21% Similarity=0.398 Sum_probs=207.5
Q ss_pred CCeEEEEEecC--Cc--eeeEEeecCCCCCceEEEEcCCCCE----EEEEECCCcEEEEeCCCc------eeEeeecccc
Q 019847 35 GPVLFLWKWEN--GK--VKKLLQVPGEDDYPTSVSWSHDAKT----LAVGYMDSKLQLWDAETS------KLVRNLEGHH 100 (335)
Q Consensus 35 ~~~i~vw~~~~--~~--~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~dg~i~iw~~~~~------~~~~~~~~~~ 100 (335)
+.++.+|.++. .+ ++..-.+ .-....+.++|.+.+.. ||.|..||.|.+||...- ..+.....|+
T Consensus 38 ~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~ 116 (1049)
T KOG0307|consen 38 SASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT 116 (1049)
T ss_pred ccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccC
Confidence 44566666543 22 1222222 23456789999997765 888889999999997652 3455677899
Q ss_pred cceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE-eecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCc
Q 019847 101 RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC-IKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSS 178 (335)
Q Consensus 101 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~ 178 (335)
+.|..+.|++..+++|++|+.||.|.|||+...+..... -....+.|.+++|+. ..+.|++++.+|.+.|||++..
T Consensus 117 G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-- 194 (1049)
T KOG0307|consen 117 GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-- 194 (1049)
T ss_pred CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC--
Confidence 999999999988889999999999999999875544333 223567899999998 4678899999999999999974
Q ss_pred ccceeeccCCC--CCeeEEEecCCCCcEEEEecC-CCCCeEEEEECCCC-ceEEEeecC-CcEeEEEeCCCCc-eeeeee
Q 019847 179 SKSLHRFTDHC--GGVKALAWSPHQVNVLATGGG-REDGCIKIWNVQKG-TCIHGIDAK-AQICGLEWNRHHK-EILSGH 252 (335)
Q Consensus 179 ~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~g-~~d~~i~i~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~ 252 (335)
+++..+..+. ..+..+.|+|++..-++++++ ...-.|.+||+|.. .+++.+++| ..+.++.|++.+. +++++
T Consensus 195 -~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSs- 272 (1049)
T KOG0307|consen 195 -KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSS- 272 (1049)
T ss_pred -CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcc-
Confidence 3344444343 347789999998776666652 12347999999864 456666554 5799999999994 44544
Q ss_pred eeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCC-EEEEEeCCCcEEEEecCCCC
Q 019847 253 GFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGL-TVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 253 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~ 314 (335)
+.|+.|.+|+.++++.+..+......+..+.|+|... .++.++-||.|.||.+.+..
T Consensus 273 -----gkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 273 -----GKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred -----cCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 8899999999999999999999888999999999765 78888999999999998765
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-25 Score=179.60 Aligned_cols=262 Identities=15% Similarity=0.200 Sum_probs=203.9
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC--------ceeEeeecccccceeEeeecCCCCCEEEEeeCC
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET--------SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 122 (335)
.+++..|.+.|+.++|.|....|++++.||.|.+|+++. -+++.+|.+|.++|.|+++.+ ++..+++|+.|
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~D 365 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGID 365 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccC
Confidence 345667899999999999999999999999999999932 256788999999999999998 99999999999
Q ss_pred CcEEEEecccC---------CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCee
Q 019847 123 KSIINHDVRVS---------NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVK 193 (335)
Q Consensus 123 g~i~~~d~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 193 (335)
|+|+.|++... ..+...+.+|.+.++.+++++....|++++.||+++.|+...... .........+...
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFGEPKEHGYPL 443 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc--cccCCccccCCcc
Confidence 99999966522 134566889999999999999888999999999999999765432 1111111223345
Q ss_pred EEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec--------CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEE
Q 019847 194 ALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA--------KAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265 (335)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 265 (335)
++.+-.....+..+.. .-+.-.++++.....+..+.. ...+..+.++|.+...+++ .+++.|++
T Consensus 444 svd~~ss~~a~~~~s~--~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~------hed~~Ir~ 515 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASF--RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTA------HEDRSIRF 515 (577)
T ss_pred eEeeccchhHhhhhhc--ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEec------ccCCceec
Confidence 6666554433333221 334444455555554444432 1357778889998887776 67999999
Q ss_pred EECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccc
Q 019847 266 WKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHL 323 (335)
Q Consensus 266 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 323 (335)
+|..++.++.....|...++++++.|+|.+|++++.||.+++|++..+........|.
T Consensus 516 ~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 516 FDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred ccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 9999999999999999999999999999999999999999999998887766655544
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.5e-24 Score=167.72 Aligned_cols=261 Identities=16% Similarity=0.265 Sum_probs=205.4
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCC--ceeEeeecccccceeEeeecCCCCC-EEEEeeCCCcEEEEecccCC
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET--SKLVRNLEGHHRRVATSSWNHWNGH-ILTSGSKDKSIINHDVRVSN 134 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~ 134 (335)
.+.|+++.|+|....|++++.||.++||.+.. ...++.+.-...+|.+..|.| +|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p-~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP-NGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC-CCceEEEecccceEEEEeeccccc
Confidence 46799999999999999999999999998863 445666666778999999999 776 99999999999999998655
Q ss_pred ee-eEEeecCC-CCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCC
Q 019847 135 NV-TSCIKAHS-GEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE 212 (335)
Q Consensus 135 ~~-~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 212 (335)
.. +....+++ ..+.....+|++++|+..+..|.|.+....+. ..+..++ -.+.|..++|+.+++.++++++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~---eli~s~K-ieG~v~~~~fsSdsk~l~~~~~--- 364 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK---ELITSFK-IEGVVSDFTFSSDSKELLASGG--- 364 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh---hhhheee-eccEEeeEEEecCCcEEEEEcC---
Confidence 32 22223333 45778889999999999999999999986654 3344443 4678999999999998888884
Q ss_pred CCeEEEEECCCCceEEEeecCCc--EeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC------CceeecccCCCCce
Q 019847 213 DGCIKIWNVQKGTCIHGIDAKAQ--ICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN------MTKVGELQSSNSRI 284 (335)
Q Consensus 213 d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~------~~~~~~~~~~~~~i 284 (335)
+|.|.+||++...+++.+...+. -++++.++++.++++| ++.|.|.|||..+ .+++..+..-...|
T Consensus 365 ~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~G------S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~I 438 (514)
T KOG2055|consen 365 TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATG------SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAI 438 (514)
T ss_pred CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEec------cCcceEEEeccchhhccCCCCchhhhhhhheee
Confidence 99999999999999999877664 4567888999999988 8899999999653 56777777777889
Q ss_pred eEeEEcCCCCEEEEEeC--CCcEEEEecCCCCCCCC---ccccccccccceec
Q 019847 285 LDLSQSPDGLTVATAGA--DETIRFWEAFGPSGDED---SVSHLAGLVSLKTS 332 (335)
Q Consensus 285 ~~~~~~~~~~~l~~~~~--dg~v~iw~~~~~~~~~~---~~~~~~~i~~~~~~ 332 (335)
++++|++|.++||.+|. +..+++-.+.+...-.. .-.....+.++.||
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFS 491 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFS 491 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEec
Confidence 99999999999988874 56788776655322111 12334445555554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-24 Score=176.47 Aligned_cols=276 Identities=19% Similarity=0.320 Sum_probs=213.1
Q ss_pred cceeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 18 YSKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
.+.-++|.|+ .-+..+.+..+.+||.+.|... .++.+|.+.|+|++|+.||+.+|+|+.|..|.+|+-+-...+ .+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~ll--qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLL--QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY 90 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccc--cccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee
Confidence 4566788874 4444556778999999999864 466799999999999999999999999999999985533322 22
Q ss_pred cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCC
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 176 (335)
.|.+.|.|+.|+| -...|++++-+ ..-+|......... ......+.+.+|..||++|+.|-.+|+|.+-+-. +
T Consensus 91 -SH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK~V~K---~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-g 163 (1081)
T KOG1538|consen 91 -SHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQKSVSK---HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-G 163 (1081)
T ss_pred -ccCCeeeEeecCc-hHHHhhhcchh-hccccChhhhhHHh---hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-C
Confidence 4899999999999 88888887753 45678765332211 1234568899999999999999999999998644 3
Q ss_pred CcccceeeccCCCCCeeEEEecCCCC----cEEEEecCCCCCeEEEEECCCCceEE-EeecCCcEeEEEeCCCCceeeee
Q 019847 177 SSSKSLHRFTDHCGGVKALAWSPHQV----NVLATGGGREDGCIKIWNVQKGTCIH-GIDAKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 251 (335)
+....+....+.+++|.+++|+|... .+++... ...++.++.+. |+.+. .-..+-...|+.+.++|.+++.|
T Consensus 164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D--W~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiG 240 (1081)
T KOG1538|consen 164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD--WGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLG 240 (1081)
T ss_pred CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe--ccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEc
Confidence 34445666667889999999999743 2444443 56677777765 44433 23334567899999999999988
Q ss_pred eeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 252 HGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 252 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+.|+.+++|- +.|-.+.++......|..++..|++++++.|+.||+|-.|++...
T Consensus 241 ------Gsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 241 ------GSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred ------cCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 7799999997 567777888778889999999999999999999999999987643
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=174.24 Aligned_cols=291 Identities=21% Similarity=0.306 Sum_probs=217.4
Q ss_pred ecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCC---EEEEEECCCcEEEEeCCCce------------------
Q 019847 33 ALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAK---TLAVGYMDSKLQLWDAETSK------------------ 91 (335)
Q Consensus 33 ~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~iw~~~~~~------------------ 91 (335)
+.+..|.++.-..++......+.||.+.|.+++|...+. +||++++|..||||.+.-+.
T Consensus 166 gs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~ 245 (764)
T KOG1063|consen 166 GSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLP 245 (764)
T ss_pred CcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCc
Confidence 356678888877788888899999999999999987544 88999999999999863221
Q ss_pred ---eE----------eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee----E--EeecCCCCEEEEEe
Q 019847 92 ---LV----------RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT----S--CIKAHSGEVCGLKW 152 (335)
Q Consensus 92 ---~~----------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~----~--~~~~~~~~i~~~~~ 152 (335)
.. ..+.+|.+.|.++.|+| .+..|++++.|.++.+|...+...+- + ...+.........|
T Consensus 246 ~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw 324 (764)
T KOG1063|consen 246 VFMILEEIQYRISFEALLMGHEDWVYSVWWHP-EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLW 324 (764)
T ss_pred eeeeeeeEEEEEehhhhhcCcccceEEEEEcc-chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEE
Confidence 11 11348999999999999 88899999999999999987552211 1 11223345788999
Q ss_pred ecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEE------------
Q 019847 153 SNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWN------------ 220 (335)
Q Consensus 153 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d------------ 220 (335)
+|+++.+++-+.-|..++|...+...........+|.+.|..++|+|.|+++++++ .|.+-|+|-
T Consensus 325 ~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs---~DQTTRlFa~wg~q~~wHEia 401 (764)
T KOG1063|consen 325 SPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVS---LDQTTRLFARWGRQQEWHEIA 401 (764)
T ss_pred cCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEec---cccceeeecccccccceeeec
Confidence 99999999999999999999555555566677789999999999999999888776 455555542
Q ss_pred ----------------------------------CCC-------------------------------------------
Q 019847 221 ----------------------------------VQK------------------------------------------- 223 (335)
Q Consensus 221 ----------------------------------~~~------------------------------------------- 223 (335)
...
T Consensus 402 RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~ 481 (764)
T KOG1063|consen 402 RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNT 481 (764)
T ss_pred ccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccc
Confidence 110
Q ss_pred Cce----EE-----------------------------Ee-ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC
Q 019847 224 GTC----IH-----------------------------GI-DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269 (335)
Q Consensus 224 ~~~----~~-----------------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 269 (335)
|.. .. .+ -+...+.+++.+|+++.+++++. ...-+.-.|++|+..
T Consensus 482 G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCK-S~~~ehAvI~lw~t~ 560 (764)
T KOG1063|consen 482 GGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACK-SSLKEHAVIRLWNTA 560 (764)
T ss_pred ccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhh-hCCccceEEEEEecc
Confidence 000 00 00 01235788899999998887642 112234679999999
Q ss_pred CCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC----cccccccccc
Q 019847 270 NMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED----SVSHLAGLVS 328 (335)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~----~~~~~~~i~~ 328 (335)
+....+.+..|.-.|+.++|||||++|++.+.|.++.+|+......... ...|..-|..
T Consensus 561 ~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWd 623 (764)
T KOG1063|consen 561 NWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWD 623 (764)
T ss_pred chhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEE
Confidence 9999999999999999999999999999999999999999865433221 3455554443
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-23 Score=172.06 Aligned_cols=294 Identities=20% Similarity=0.319 Sum_probs=228.1
Q ss_pred CCcccccceeeeecCC--ceEEEecCCeEEEEEecCC--ceeeEEee---cCCCCCceEEEEcCCCCEEEEEECCCcEEE
Q 019847 12 YLMEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENG--KVKKLLQV---PGEDDYPTSVSWSHDAKTLAVGYMDSKLQL 84 (335)
Q Consensus 12 ~~~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~--~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (335)
...++-.+.++.|++. .+++++.|+++.+|..++. -.....++ .+.........|+|+++.+++-+..|..++
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 3456778999999995 5899999999999997654 33334443 233445788999999999999999999999
Q ss_pred EeCCCc---eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe---eeEEeecCCCCEEEEEeecCCCE
Q 019847 85 WDAETS---KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN---VTSCIKAHSGEVCGLKWSNEGNL 158 (335)
Q Consensus 85 w~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~ 158 (335)
|..+.. .....+.+|.+.|..++|.| .+.+|++.+.|.+-++|-.-..+. .+...+-|.-.++|+++-+....
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 983321 33445678999999999999 999999999999999987652211 12234458888999999887778
Q ss_pred EEEEeCCCeEEEEEccC-------------------------------------------CC------------------
Q 019847 159 LASGGDDNVVRIWERSK-------------------------------------------MS------------------ 177 (335)
Q Consensus 159 l~~~~~dg~i~iwd~~~-------------------------------------------~~------------------ 177 (335)
+++|..+..+|+|+... +.
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 99999999999997311 00
Q ss_pred ------------cccceeeccCCCCCeeEEEecCCCCcEEEEecCC---CCCeEEEEECCCCceEEEeecCC-cEeEEEe
Q 019847 178 ------------SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGR---EDGCIKIWNVQKGTCIHGIDAKA-QICGLEW 241 (335)
Q Consensus 178 ------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~---~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~ 241 (335)
....++.+.+|...|.+++.+|+++ ++++++-+ +...|++|+..+...+..+..|. .|+.++|
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAF 580 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEE
Confidence 0001233457888999999999995 66665411 22469999999988888777665 7999999
Q ss_pred CCCCceeeeeeeeeeecCCCeEEEEECCCCce----eecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 242 NRHHKEILSGHGFSASGDGNKLCLWKYPNMTK----VGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+|++++|++. +.|.++.+|....... ....+.|..-|.+..|+|++.+++|+|.|.+|++|.....
T Consensus 581 Spdg~~LLsv------sRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 581 SPDGRYLLSV------SRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CCCCcEEEEe------ecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9999999987 7799999998754322 3346789999999999999999999999999999999887
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-24 Score=159.85 Aligned_cols=248 Identities=17% Similarity=0.231 Sum_probs=184.6
Q ss_pred ceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEe
Q 019847 61 PTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI 140 (335)
Q Consensus 61 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 140 (335)
-.|+.|++.|.+||+|+.||.|.|||+.|...-+.+.+|-.+|++++|++ +++.|++++.|..|.+||+..+..+.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~ri- 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRI- 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEE-
Confidence 68999999999999999999999999999999999999999999999999 9999999999999999999987754443
Q ss_pred ecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeecc--CCCCCeeEEEecCCCCcEEEEecCCCCCeEE
Q 019847 141 KAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFT--DHCGGVKALAWSPHQVNVLATGGGREDGCIK 217 (335)
Q Consensus 141 ~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (335)
...++|+...|+| +.+..++.-.+..-.+-++..+. ...+..-. ..+....+..|.+.|+++++ |...|.+.
T Consensus 104 -rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~yIit---GtsKGkll 178 (405)
T KOG1273|consen 104 -RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGKYIIT---GTSKGKLL 178 (405)
T ss_pred -EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeeccCCCccccccccccccccCCCCEEEE---ecCcceEE
Confidence 3688999999999 44444444445445555554321 11111100 01112233468888876666 34799999
Q ss_pred EEECCCCceEEEeecC--CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC---------ceeecccC--CCCce
Q 019847 218 IWNVQKGTCIHGIDAK--AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM---------TKVGELQS--SNSRI 284 (335)
Q Consensus 218 i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~---------~~~~~~~~--~~~~i 284 (335)
++|..+.+++..++.. ..|..+.++..|+.++.- +.|..|+.|+...- ++.+.++. ....-
T Consensus 179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiN------tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLIIN------TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred EEecchheeeeeeeechheeeeEEEEeccCcEEEEe------cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 9999999999888754 578999999999998876 67999999998631 11122221 11234
Q ss_pred eEeEEcCCCCEEEEEeC-CCcEEEEecCCCCCCCCccc
Q 019847 285 LDLSQSPDGLTVATAGA-DETIRFWEAFGPSGDEDSVS 321 (335)
Q Consensus 285 ~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~ 321 (335)
.+++|+.+|.|++.++. -..++||.-..+.....+.+
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG 290 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG 290 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecC
Confidence 57889999999988764 45699999888776554433
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-24 Score=165.29 Aligned_cols=251 Identities=20% Similarity=0.311 Sum_probs=195.9
Q ss_pred CCCceEEEEcCCCC-EEEEEECCCcEEEEeCCCce---------eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEE
Q 019847 58 DDYPTSVSWSHDAK-TLAVGYMDSKLQLWDAETSK---------LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIIN 127 (335)
Q Consensus 58 ~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 127 (335)
..++..+.|.++.. .+++|+.|..|++|-++.++ ....+..|...|+++.|+| ++++|++|+.+|.+.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEE
Confidence 46789999998766 99999999999999886432 3445778999999999999 9999999999999999
Q ss_pred Eecc--------c-----C--CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCe
Q 019847 128 HDVR--------V-----S--NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGV 192 (335)
Q Consensus 128 ~d~~--------~-----~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 192 (335)
|-.. + . ....+.+.+|...|..++|+|+++++++++.|..+++||+.. +.....+..|...+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~---G~l~~~~~dh~~yv 168 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA---GQLLAILDDHEHYV 168 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc---ceeEeecccccccc
Confidence 9865 2 1 124556778999999999999999999999999999999887 45577888999999
Q ss_pred eEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee-----------cCC-------------cEeEEEeCCCCcee
Q 019847 193 KALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID-----------AKA-------------QICGLEWNRHHKEI 248 (335)
Q Consensus 193 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-----------~~~-------------~~~~~~~~~~~~~~ 248 (335)
..++|.|-++++..-+ .|...+.+++...+.+.... .++ -...++|+|+|..+
T Consensus 169 qgvawDpl~qyv~s~s---~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ll 245 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKS---SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLL 245 (434)
T ss_pred ceeecchhhhhhhhhc---cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEE
Confidence 9999999997666655 57777777765443332221 011 13446788888887
Q ss_pred eeeee---------------------------------------------------------------eeeecCCCeEEE
Q 019847 249 LSGHG---------------------------------------------------------------FSASGDGNKLCL 265 (335)
Q Consensus 249 ~~~~~---------------------------------------------------------------~~~~~~~~~i~i 265 (335)
++..+ ..+-...+.+.+
T Consensus 246 vtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyv 325 (434)
T KOG1009|consen 246 VTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYV 325 (434)
T ss_pred EcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEE
Confidence 76421 112234577888
Q ss_pred EECCCCceeeccc-CCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 019847 266 WKYPNMTKVGELQ-SSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 266 ~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
||.++..++.... -|-..|++++|++||..|+..+.||...+-.++..+.
T Consensus 326 ydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 326 YDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 8888877776654 3777899999999999999999999998877766543
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.5e-22 Score=163.27 Aligned_cols=271 Identities=13% Similarity=0.203 Sum_probs=182.7
Q ss_pred EEEecCCeEEEEEecC-CceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCC-Ccee--Eeeeccccccee
Q 019847 30 LAVALGPVLFLWKWEN-GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAE-TSKL--VRNLEGHHRRVA 104 (335)
Q Consensus 30 ~~~~~~~~i~vw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~-~~~~--~~~~~~~~~~v~ 104 (335)
++...++.|.+|++.+ ++......++ +...+..++++|++++|++++ .++.|.+|+++ +++. +.... ......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 3446789999999964 4543333333 345578899999999987765 57889999986 3332 22222 334567
Q ss_pred EeeecCCCCCEEEEee-CCCcEEEEecccCCee---eEEeecCCCCEEEEEeecCCCEEEEEe-CCCeEEEEEccCCCcc
Q 019847 105 TSSWNHWNGHILTSGS-KDKSIINHDVRVSNNV---TSCIKAHSGEVCGLKWSNEGNLLASGG-DDNVVRIWERSKMSSS 179 (335)
Q Consensus 105 ~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~ 179 (335)
.+.++| +++.+++++ .++.|.+|++++.... .... .+......++++|+++++++++ .++.|.+||++.....
T Consensus 84 ~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 84 HISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred EEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 899999 888777765 4889999999744322 1212 2334567788999999886555 5689999999763221
Q ss_pred cc----eeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC--Cc--eEEEeec-------CCcEeEEEeCCC
Q 019847 180 KS----LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK--GT--CIHGIDA-------KAQICGLEWNRH 244 (335)
Q Consensus 180 ~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~--~~~~~~~-------~~~~~~~~~~~~ 244 (335)
.. ..... .......+.|+|++++++++.. .++.|.+|++.. ++ .+..+.. ......+.++|+
T Consensus 162 ~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~--~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 162 VAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNE--LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred cccCCCceecC-CCCCCceEEECCCCCEEEEEec--CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 11 01111 1234678999999988878764 589999999973 32 2333321 112335889999
Q ss_pred CceeeeeeeeeeecCCCeEEEEECCCCce----eecccCCCCceeEeEEcCCCCEEEEEeC-CCcEEEEecCCC
Q 019847 245 HKEILSGHGFSASGDGNKLCLWKYPNMTK----VGELQSSNSRILDLSQSPDGLTVATAGA-DETIRFWEAFGP 313 (335)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~ 313 (335)
+++++++. ..++.|.+|++..... +..... ......+.++|+|++|+++.. ++.|.+|+++..
T Consensus 239 g~~lyv~~-----~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 239 GRHLYACD-----RTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred CCEEEEec-----CCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence 99988763 4578999999865432 222222 124567899999999998875 899999998654
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=152.43 Aligned_cols=243 Identities=19% Similarity=0.321 Sum_probs=182.0
Q ss_pred cceeeeecCCceEEEecCCeEEEEEec--CCceeeEEeecCCCCCceEEEEcC--CCCEEEEEECCCcEEEEeCCC----
Q 019847 18 YSKVIDWGRNNVLAVALGPVLFLWKWE--NGKVKKLLQVPGEDDYPTSVSWSH--DAKTLAVGYMDSKLQLWDAET---- 89 (335)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~i~vw~~~--~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~---- 89 (335)
...+++|++.++++++.|++|+|||.+ ++.....-....|.+.|..+.|.+ -|+.+|+++.|+++.||.-..
T Consensus 17 hdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~ 96 (361)
T KOG2445|consen 17 HDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEE 96 (361)
T ss_pred eeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccc
Confidence 334455566889999999999999964 344555556678999999999976 689999999999999997521
Q ss_pred -----ceeEeeecccccceeEeeecCC-CCCEEEEeeCCCcEEEEecccCCeeeE------------EeecCCCCEEEEE
Q 019847 90 -----SKLVRNLEGHHRRVATSSWNHW-NGHILTSGSKDKSIINHDVRVSNNVTS------------CIKAHSGEVCGLK 151 (335)
Q Consensus 90 -----~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~------------~~~~~~~~i~~~~ 151 (335)
......+......|+.+.|.|. -+-.+++++.||.+++|+......+.+ ....+..+..|+.
T Consensus 97 ~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs 176 (361)
T KOG2445|consen 97 AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS 176 (361)
T ss_pred cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe
Confidence 1234456667789999999984 355789999999999999764332211 1223667788999
Q ss_pred eec---CCCEEEEEeCC-----CeEEEEEccCCC-cccceeeccCCCCCeeEEEecCCCC---cEEEEecCCCCCeEEEE
Q 019847 152 WSN---EGNLLASGGDD-----NVVRIWERSKMS-SSKSLHRFTDHCGGVKALAWSPHQV---NVLATGGGREDGCIKIW 219 (335)
Q Consensus 152 ~~~---~~~~l~~~~~d-----g~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~g~~d~~i~i~ 219 (335)
|+| ...+||+|+.+ +.++||...... ....+..+.+|..+|+.++|.|+-. +++++++ .|| |+||
T Consensus 177 Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~--kDg-v~I~ 253 (361)
T KOG2445|consen 177 WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT--KDG-VRIF 253 (361)
T ss_pred eccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee--cCc-EEEE
Confidence 998 45688888865 478999876544 4556777889999999999999743 4777776 899 9999
Q ss_pred ECCCC--------------------ceEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC
Q 019847 220 NVQKG--------------------TCIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269 (335)
Q Consensus 220 d~~~~--------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 269 (335)
.++.. +.+..+. +..++..+.|+-.|..|.+. ++||.+++|...
T Consensus 254 ~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsSt------GdDG~VRLWkan 318 (361)
T KOG2445|consen 254 KVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSST------GDDGCVRLWKAN 318 (361)
T ss_pred EEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeec------CCCceeeehhhh
Confidence 98731 1122233 34589999998888777765 899999999754
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=153.40 Aligned_cols=262 Identities=17% Similarity=0.281 Sum_probs=193.8
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCce------------eEeeec-ccccceeEeeec-------CCCCCEEEE
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK------------LVRNLE-GHHRRVATSSWN-------HWNGHILTS 118 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------------~~~~~~-~~~~~v~~~~~~-------~~~~~~l~~ 118 (335)
.-...+.|+|||..|++-+.|..+++|++...- ....++ .....|...+|- | +.+++++
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP-~t~l~a~ 128 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP-STNLFAV 128 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC-ccceeee
Confidence 345678999999999999999999999985210 011111 123456666664 4 7789999
Q ss_pred eeCCCcEEEEecccCCeeeEEeec--CCC---CEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeec-----cCC
Q 019847 119 GSKDKSIINHDVRVSNNVTSCIKA--HSG---EVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF-----TDH 188 (335)
Q Consensus 119 ~~~dg~i~~~d~~~~~~~~~~~~~--~~~---~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~ 188 (335)
.+.+.-|++||.-+++. ...+.+ |.. ...+++|+|||..|++|. ...|++||+..+......... .+.
T Consensus 129 ssr~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred ccccCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccc
Confidence 99999999999987664 322222 332 346899999999999876 678999999544332222222 233
Q ss_pred CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEE
Q 019847 189 CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK 267 (335)
Q Consensus 189 ~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 267 (335)
.+-+.+++|+|.....++.++ ....+-||.-..+.++..+-. .+.|+.++|.++|+.+.+|. ..+..|..||
T Consensus 207 ~giisc~a~sP~~~~~~a~gs--Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGa-----Rk~dkIl~WD 279 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGS--YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGA-----RKDDKILCWD 279 (406)
T ss_pred cceeeeeeccCCCCcceeeec--ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccc-----cCCCeEEEEe
Confidence 667899999999988999887 888899998888888777654 56899999999999998884 5689999999
Q ss_pred CCC-CceeecccCCCC-ceeE--eEEcCCCCEEEEEeCCCcEEEEecCC-CCCCCCccccccccccce
Q 019847 268 YPN-MTKVGELQSSNS-RILD--LSQSPDGLTVATAGADETIRFWEAFG-PSGDEDSVSHLAGLVSLK 330 (335)
Q Consensus 268 ~~~-~~~~~~~~~~~~-~i~~--~~~~~~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~~~~~~i~~~~ 330 (335)
++. ..++..+..|.+ .-.. ....|++++|++|+.||.|++||++. +........+.+.+..++
T Consensus 280 iR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvs 347 (406)
T KOG2919|consen 280 IRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVS 347 (406)
T ss_pred ehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccccccee
Confidence 986 556777777755 2223 45578899999999999999999998 444555566666555544
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=171.70 Aligned_cols=267 Identities=19% Similarity=0.289 Sum_probs=201.2
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCCcee--Eee----ecccccceeEeee
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAETSKL--VRN----LEGHHRRVATSSW 108 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~--~~~----~~~~~~~v~~~~~ 108 (335)
+.+.+|+++.. ..+...+. -...|+|+.|+| +..++|.|..+|.|.+||+..+.. ... ...|..+++.+.|
T Consensus 222 ~~~~vW~~~~p-~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNP-NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCC-CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 37999999877 33344443 367899999999 567788888999999999987654 222 2358899999999
Q ss_pred cCCCC--CEEEEeeCCCcEEEEecccCCeeeEE-----ee------cCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEcc
Q 019847 109 NHWNG--HILTSGSKDKSIINHDVRVSNNVTSC-----IK------AHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 109 ~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~-----~~------~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 174 (335)
.. +. .-|++++.||.|..|+++.-..+... .. .....+++++|.+ +...+++|+++|.|.--+-.
T Consensus 300 ~~-~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 300 LQ-NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred ec-cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 76 33 44999999999999998743321111 11 1234678999988 67789999999998774332
Q ss_pred CCCcc-----cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC-CCceEEEeecCC-cEeEEEeCCCCce
Q 019847 175 KMSSS-----KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ-KGTCIHGIDAKA-QICGLEWNRHHKE 247 (335)
Q Consensus 175 ~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 247 (335)
..... +....+..|.++|.++.++|-+..++.+++ |.++++|... ...++..+.... .+.+++|||....
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g---DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG---DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA 455 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeec---cceeEeccccCCCCcchhhhhccceeeeeEEcCcCce
Confidence 22111 224456678999999999999998999885 9999999987 666666665544 5999999999877
Q ss_pred eeeeeeeeeecCCCeEEEEECCC--CceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 248 ILSGHGFSASGDGNKLCLWKYPN--MTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 248 ~~~~~~~~~~~~~~~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
++. +...+|.+.+||+.. ..++.+.+.+....+.+.|+++|+.|++|...|.+.+|++...
T Consensus 456 vF~-----~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 456 VFA-----TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EEE-----EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 643 347799999999865 4455555555666788899999999999999999999999753
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=153.61 Aligned_cols=271 Identities=18% Similarity=0.309 Sum_probs=206.1
Q ss_pred cceeeeecCC--ceEEEecCCeEEEEEecCCc------------eeeEEeecCCCCCceEEEEc-------CCCCEEEEE
Q 019847 18 YSKVIDWGRN--NVLAVALGPVLFLWKWENGK------------VKKLLQVPGEDDYPTSVSWS-------HDAKTLAVG 76 (335)
Q Consensus 18 ~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~------------~~~~~~~~~~~~~v~~~~~~-------~~~~~l~~~ 76 (335)
+.....|+|+ -+++-+.|+.+.+|++...- ....+++. ....|+..+|- |+..++|+.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~-eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ-EGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec-cCCEEEEEEeeeccccCCCccceeeec
Confidence 3456789985 58888899999999985321 11122222 24567777775 677899999
Q ss_pred ECCCcEEEEeCCCceeEeeecc--cc---cceeEeeecCCCCCEEEEeeCCCcEEEEecc-cCCee-eEE-----eecCC
Q 019847 77 YMDSKLQLWDAETSKLVRNLEG--HH---RRVATSSWNHWNGHILTSGSKDKSIINHDVR-VSNNV-TSC-----IKAHS 144 (335)
Q Consensus 77 ~~dg~i~iw~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~-~~~-----~~~~~ 144 (335)
+.+.-|++||.-+|++...+.+ |. ....+++|+| ++..|++|. ...|++||+. .+... ... ..+..
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccc
Confidence 9999999999999998877754 32 3567899999 999998765 6789999994 33221 111 12336
Q ss_pred CCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC
Q 019847 145 GEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 145 ~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 223 (335)
+-+.+++|+| +...++.|+....+-||.-. ...++..+.+|.+.|+.++|.++|..+++-+. .|-.|..||++.
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~---~~~pl~llggh~gGvThL~~~edGn~lfsGaR--k~dkIl~WDiR~ 282 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDD---GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR--KDDKILCWDIRY 282 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecC---CCCceeeecccCCCeeeEEeccCcCeeccccc--CCCeEEEEeehh
Confidence 6789999999 56699999988888887743 35668888899999999999999987777654 789999999986
Q ss_pred Cc-eEEEeec----CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC-CceeecccCCCCceeEeEEcCCCCEEE
Q 019847 224 GT-CIHGIDA----KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN-MTKVGELQSSNSRILDLSQSPDGLTVA 297 (335)
Q Consensus 224 ~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~ 297 (335)
.+ ++..+.. .+.-.-....|.++.|++| +.+|.|++||++. +..+..+..+...++.++++|--.+++
T Consensus 283 ~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG------~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpila 356 (406)
T KOG2919|consen 283 SRDPVYALERHVGDTNQRILFDLDPKGEILASG------DTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILA 356 (406)
T ss_pred ccchhhhhhhhccCccceEEEecCCCCceeecc------CCCccEEEEecCCCCCcccccccccccccceecCcccceee
Confidence 43 3433332 2334456778999999988 7799999999998 777888889999999999999988888
Q ss_pred EEeCC
Q 019847 298 TAGAD 302 (335)
Q Consensus 298 ~~~~d 302 (335)
+++..
T Consensus 357 tssGq 361 (406)
T KOG2919|consen 357 TSSGQ 361 (406)
T ss_pred eccCc
Confidence 88754
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-23 Score=170.26 Aligned_cols=261 Identities=17% Similarity=0.303 Sum_probs=190.2
Q ss_pred eEEEEcC---CCCEEEEEECCCcEEEEeCCCcee------EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEeccc
Q 019847 62 TSVSWSH---DAKTLAVGYMDSKLQLWDAETSKL------VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV 132 (335)
Q Consensus 62 ~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 132 (335)
.+..|++ ....|+.+..||.|.++|...... +.....|...|..+.|.| ....|++++.|.++++||+++
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeecc
Confidence 3466765 345789999999999999865332 355668999999999999 899999999999999999986
Q ss_pred CCeee-EEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCc------------------------ccceeecc
Q 019847 133 SNNVT-SCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSS------------------------SKSLHRFT 186 (335)
Q Consensus 133 ~~~~~-~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~------------------------~~~~~~~~ 186 (335)
.+..- ..+.+|.+.|.+++|.| +...|++|+.||.|.|||++.... .+.+....
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 65432 24789999999999999 667899999999999999874320 00112222
Q ss_pred CCCCCeeE---EEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec------------CCcEeEEEeCCCCceeeee
Q 019847 187 DHCGGVKA---LAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA------------KAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 187 ~~~~~v~~---~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 251 (335)
.+...|.+ +.+..|...|+.++. .|+.|++||+++.......+. ...+.++..+..|.++++.
T Consensus 212 A~s~ti~ssvTvv~fkDe~tlaSaga--~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As 289 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDESTLASAGA--ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS 289 (720)
T ss_pred cccCceeeeeEEEEEeccceeeeccC--CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence 34444544 555566655555553 799999999998654433221 1247788888888888766
Q ss_pred eeeeeecCCCeEEEEECCCCc--eeecccCCCCce--eEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCC-Ccccccccc
Q 019847 252 HGFSASGDGNKLCLWKYPNMT--KVGELQSSNSRI--LDLSQSPDGLTVATAGADETIRFWEAFGPSGDE-DSVSHLAGL 326 (335)
Q Consensus 252 ~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~-~~~~~~~~i 326 (335)
+.|+.|++|++.+.. ++..+.++...- ..=..+||+.+|++|+.|...++|.+....... .+.+|...|
T Consensus 290 ------CtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eV 363 (720)
T KOG0321|consen 290 ------CTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREV 363 (720)
T ss_pred ------ecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEE
Confidence 569999999998643 444554443211 122468999999999999999999999986544 456888777
Q ss_pred cccee
Q 019847 327 VSLKT 331 (335)
Q Consensus 327 ~~~~~ 331 (335)
..+.+
T Consensus 364 t~V~w 368 (720)
T KOG0321|consen 364 TTVRW 368 (720)
T ss_pred EEEee
Confidence 76654
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-24 Score=188.06 Aligned_cols=251 Identities=18% Similarity=0.340 Sum_probs=196.7
Q ss_pred CCcccccceeeeecC--C---ceEEE-ecCCeEEEEEecC----CceeeEEeecCCCCCceEEEEcCCC-CEEEEEECCC
Q 019847 12 YLMEDYYSKVIDWGR--N---NVLAV-ALGPVLFLWKWEN----GKVKKLLQVPGEDDYPTSVSWSHDA-KTLAVGYMDS 80 (335)
Q Consensus 12 ~~~~~~~~~~~~~~~--~---~~~~~-~~~~~i~vw~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg 80 (335)
.+..+...+.++|.. . .++++ ..||.|.+||... .+...+.+...|++.|..+.|++.. +.||+|+.||
T Consensus 60 s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 60 SLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred cccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCC
Confidence 344566777899986 2 24555 4899999999765 2222344557899999999999955 5999999999
Q ss_pred cEEEEeCCCceeEeee--cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCC--CCEEEEEeecCC
Q 019847 81 KLQLWDAETSKLVRNL--EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHS--GEVCGLKWSNEG 156 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~ 156 (335)
.|.|||+.+.+.-... ....+.|.+++|+....++|++++.+|.+.|||++..+.++.. ..+. ..+..++|+|+.
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l-s~~~~~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL-SDTPGRMHCSVLAWHPDH 218 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc-ccCCCccceeeeeeCCCC
Confidence 9999999875544433 1245789999999888899999999999999999977665443 3333 357899999964
Q ss_pred -CEEEEEeCCC---eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec
Q 019847 157 -NLLASGGDDN---VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA 232 (335)
Q Consensus 157 -~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 232 (335)
..+++++.|. .|.+||+|... .+++.+.+|...|.++.|++.+..++.+++ .|+.|.+|+.++++.+..+..
T Consensus 219 aTql~~As~dd~~PviqlWDlR~as--sP~k~~~~H~~GilslsWc~~D~~lllSsg--kD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFAS--SPLKILEGHQRGILSLSWCPQDPRLLLSSG--KDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccC--CchhhhcccccceeeeccCCCCchhhhccc--CCCCeeEecCCCceEeeecCC
Confidence 4666666553 69999999754 456777899999999999999977888877 999999999999999999976
Q ss_pred -CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc
Q 019847 233 -KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 233 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 272 (335)
..-+..+.|+|....+++.. +-||.|.||.+....
T Consensus 295 ~~nW~fdv~w~pr~P~~~A~a-----sfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 295 QGNWCFDVQWCPRNPSVMAAA-----SFDGKISIYSLQGTD 330 (1049)
T ss_pred CCcceeeeeecCCCcchhhhh-----eeccceeeeeeecCC
Confidence 45689999999998665442 559999999987654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-22 Score=151.97 Aligned_cols=240 Identities=13% Similarity=0.197 Sum_probs=180.0
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCce------------------------------------eeEEee--
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKV------------------------------------KKLLQV-- 54 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~------------------------------------~~~~~~-- 54 (335)
+.-.+++++|+.+ .+++++.|+.|++|+++.... +.++.+
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K 164 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVK 164 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeee
Confidence 4556888888874 688888999999999864221 011111
Q ss_pred -------------------cCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCE
Q 019847 55 -------------------PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHI 115 (335)
Q Consensus 55 -------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 115 (335)
..|+-.+..+-....+++|++++.|..|.+|++. |+.+..+......-...+.+| +|++
T Consensus 165 ~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRF 242 (420)
T KOG2096|consen 165 KTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRF 242 (420)
T ss_pred cccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcE
Confidence 0122334444445567789999999999999998 899998888878888899999 9999
Q ss_pred EEEeeCCCcEEEEecccCC-------eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC----CCcccceee
Q 019847 116 LTSGSKDKSIINHDVRVSN-------NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK----MSSSKSLHR 184 (335)
Q Consensus 116 l~~~~~dg~i~~~d~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~ 184 (335)
+++++..-.+++|.+--.+ .....+.+|...|..++|+++...+++.+.||++++||++- .+..+.++.
T Consensus 243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~ 322 (420)
T KOG2096|consen 243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKE 322 (420)
T ss_pred EEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhc
Confidence 9999999999999974221 11345789999999999999999999999999999999752 122222322
Q ss_pred c----cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee--cCCcEeEEEeCCCCceeeeeeeeeeec
Q 019847 185 F----TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID--AKAQICGLEWNRHHKEILSGHGFSASG 258 (335)
Q Consensus 185 ~----~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (335)
. ....+....++.+|+++.+.++ ....++++..++++....++ +...|.++.|+++|++++++
T Consensus 323 g~~pl~aag~~p~RL~lsP~g~~lA~s----~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atc------- 391 (420)
T KOG2096|consen 323 GSAPLHAAGSEPVRLELSPSGDSLAVS----FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATC------- 391 (420)
T ss_pred CCcchhhcCCCceEEEeCCCCcEEEee----cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeee-------
Confidence 2 1123334589999999755554 35789999999998877775 46789999999999999986
Q ss_pred CCCeEEEEE
Q 019847 259 DGNKLCLWK 267 (335)
Q Consensus 259 ~~~~i~i~d 267 (335)
.|..++++.
T Consensus 392 Gdr~vrv~~ 400 (420)
T KOG2096|consen 392 GDRYVRVIR 400 (420)
T ss_pred cceeeeeec
Confidence 378888876
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-22 Score=162.27 Aligned_cols=275 Identities=17% Similarity=0.252 Sum_probs=207.0
Q ss_pred ccccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCC--EEEEEECCCcEEEEeCCCc
Q 019847 15 EDYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAK--TLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 15 ~~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iw~~~~~ 90 (335)
+...+.+++.++ ..+++++.||+|+||.+.++.+.....+.+ .|.|++|+|.+. .||++-.. .+.|-+..-|
T Consensus 399 Htg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G 474 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFG 474 (733)
T ss_pred cCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecC-ceEEeCcccc
Confidence 444566666655 467777899999999999999988887754 699999999654 45554333 3444442111
Q ss_pred -------------------------------------eeEeeecccccceeEeeecCCCCCEEEEeeCC---CcEEEEec
Q 019847 91 -------------------------------------KLVRNLEGHHRRVATSSWNHWNGHILTSGSKD---KSIINHDV 130 (335)
Q Consensus 91 -------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~ 130 (335)
.-+...-.|...|..+.|+. .|++|++...+ ..|.|+++
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceEEEEec
Confidence 00122234778899999999 99999988654 47889998
Q ss_pred ccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC
Q 019847 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210 (335)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 210 (335)
..... ...+....+.|.++.|+|...+|++++ ...|++||+.. ...++.+......|..++.+|.|.++++.+
T Consensus 554 SK~~s-Q~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~k---qelvKkL~tg~kwiS~msihp~GDnli~gs-- 626 (733)
T KOG0650|consen 554 SKRKS-QSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSK---QELVKKLLTGSKWISSMSIHPNGDNLILGS-- 626 (733)
T ss_pred ccccc-cCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhH---HHHHHHHhcCCeeeeeeeecCCCCeEEEec--
Confidence 74443 234545678899999999888888887 46899999876 344555555677899999999999888854
Q ss_pred CCCCeEEEEECCCC-ceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC------C---CceeecccC
Q 019847 211 REDGCIKIWNVQKG-TCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP------N---MTKVGELQS 279 (335)
Q Consensus 211 ~~d~~i~i~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~------~---~~~~~~~~~ 279 (335)
.|+.+..+|+.-. ++.+++..+ ..+.+++|++.-..++++ ++||.+.||.-. . --++..+++
T Consensus 627 -~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~------sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~g 699 (733)
T KOG0650|consen 627 -YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASG------SDDGTVIVFHGMVYNDLLQNPLIVPLKRLRG 699 (733)
T ss_pred -CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeee------cCCCcEEEEeeeeehhhhcCCceEeeeeccC
Confidence 7999999999754 455666654 578999999999998887 789999998532 1 234567788
Q ss_pred CCCc----eeEeEEcCCCCEEEEEeCCCcEEEE
Q 019847 280 SNSR----ILDLSQSPDGLTVATAGADETIRFW 308 (335)
Q Consensus 280 ~~~~----i~~~~~~~~~~~l~~~~~dg~v~iw 308 (335)
|... |.+..|+|...+|++++.||+|++|
T Consensus 700 H~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 700 HEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ceeecccceEeecccCCCceEEecCCCceEEee
Confidence 8654 8899999999999999999999998
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.4e-21 Score=142.88 Aligned_cols=280 Identities=17% Similarity=0.283 Sum_probs=203.4
Q ss_pred ccceeeeecC----CceEE-Ee----cCCeEEEEEec--CCceeeEEeecCCCCCceEEEEcCCC-----CEEEEEECCC
Q 019847 17 YYSKVIDWGR----NNVLA-VA----LGPVLFLWKWE--NGKVKKLLQVPGEDDYPTSVSWSHDA-----KTLAVGYMDS 80 (335)
Q Consensus 17 ~~~~~~~~~~----~~~~~-~~----~~~~i~vw~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~dg 80 (335)
+...+++|+. ...++ ++ ..+.|.|-.++ +++...... ..|..+++.+.|.|+. ++||+++ |
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g~~pdlLATs~-D- 121 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKGVYPDLLATSS-D- 121 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccccCcchhhccc-C-
Confidence 4556688883 34444 44 24667776654 445444333 3688999999999976 3556553 3
Q ss_pred cEEEEeCCCceeE----ee-----ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC--eeeEEeecCCCCEEE
Q 019847 81 KLQLWDAETSKLV----RN-----LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN--NVTSCIKAHSGEVCG 149 (335)
Q Consensus 81 ~i~iw~~~~~~~~----~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~ 149 (335)
.+|+|.+...+.. .. -..+..++++..|+..+.+++.+++-|-+..+||++++. .+...+-.|..+|..
T Consensus 122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~D 201 (364)
T KOG0290|consen 122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYD 201 (364)
T ss_pred eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeE
Confidence 7999998742111 11 123557999999999899999999999999999999863 356678899999999
Q ss_pred EEeecCC-CEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-ceE
Q 019847 150 LKWSNEG-NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-TCI 227 (335)
Q Consensus 150 ~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~ 227 (335)
++|...+ +.||+.+.||.+|+||+|..+....+..-.....+...++|++...+++++-. .....|.+.|++.. .++
T Consensus 202 Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~-~dS~~V~iLDiR~P~tpv 280 (364)
T KOG0290|consen 202 IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFA-MDSNKVVILDIRVPCTPV 280 (364)
T ss_pred EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhh-cCCceEEEEEecCCCcce
Confidence 9999843 58999999999999999987665555554444678899999999988888764 24568999999864 456
Q ss_pred EEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce------eecccCCCCceeEeEEcC-CCCEEEEE
Q 019847 228 HGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK------VGELQSSNSRILDLSQSP-DGLTVATA 299 (335)
Q Consensus 228 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~------~~~~~~~~~~i~~~~~~~-~~~~l~~~ 299 (335)
..++. ...|+.++|.|....-++ ++++|....+||+.+.-. +..+. -.+.|+.+.|++ .+.+++.+
T Consensus 281 a~L~~H~a~VNgIaWaPhS~~hic-----taGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~ 354 (364)
T KOG0290|consen 281 ARLRNHQASVNGIAWAPHSSSHIC-----TAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAIC 354 (364)
T ss_pred ehhhcCcccccceEecCCCCceee-----ecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEE
Confidence 66654 568999999999765543 348999999999976332 22222 456799999996 45677766
Q ss_pred eCCCcEEE
Q 019847 300 GADETIRF 307 (335)
Q Consensus 300 ~~dg~v~i 307 (335)
.. +.+.+
T Consensus 355 ~~-kklei 361 (364)
T KOG0290|consen 355 FG-KKLEI 361 (364)
T ss_pred ec-CeeeE
Confidence 54 44444
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=165.10 Aligned_cols=126 Identities=20% Similarity=0.330 Sum_probs=98.8
Q ss_pred cceeeeecC---CceEEEecCCeEEEEEecCCceee----EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc
Q 019847 18 YSKVIDWGR---NNVLAVALGPVLFLWKWENGKVKK----LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 18 ~~~~~~~~~---~~~~~~~~~~~i~vw~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
.++.+.|++ ..+++++.|..|+||.+..+.... ...+.+.+-.|-++.|+|...-|+..+..|.++|||+.++
T Consensus 81 ~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stq 160 (1012)
T KOG1445|consen 81 QVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQ 160 (1012)
T ss_pred eeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccC
Confidence 345566665 445667789999999998553222 2233344567889999996655666667899999999999
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCC
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHS 144 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 144 (335)
+.+.++.+|...|.+..|+. ++.+|++++.|..|+|||.+.....++...+|.
T Consensus 161 k~~~el~~h~d~vQSa~Wse-DG~llatscKdkqirifDPRa~~~piQ~te~H~ 213 (1012)
T KOG1445|consen 161 KTAVELSGHTDKVQSADWSE-DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHG 213 (1012)
T ss_pred ceeecccCCchhhhcccccc-CCceEeeecCCcceEEeCCccCCCccccccccc
Confidence 99999999999999999999 999999999999999999987666555555554
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.6e-22 Score=147.26 Aligned_cols=237 Identities=22% Similarity=0.341 Sum_probs=181.2
Q ss_pred CCCcccccceeeeecCCc-----eEEEecCCeEEEEEecC--CceeeEEee-----cCCCCCceEEEEcC-CCCEEEEEE
Q 019847 11 PYLMEDYYSKVIDWGRNN-----VLAVALGPVLFLWKWEN--GKVKKLLQV-----PGEDDYPTSVSWSH-DAKTLAVGY 77 (335)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~vw~~~~--~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~ 77 (335)
+.+.+.|+++.+-|.|+. -+.++.+..+++|.+.. .+......+ ..+..++++..|+. +.+++.+++
T Consensus 91 a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 91 ANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 345667888889998853 23344566899999874 333222222 24567899999987 778999999
Q ss_pred CCCcEEEEeCCCce---eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeec--CCCCEEEEEe
Q 019847 78 MDSKLQLWDAETSK---LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA--HSGEVCGLKW 152 (335)
Q Consensus 78 ~dg~i~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~ 152 (335)
-|-+..|||++++. ....+-.|..+|..++|.....+.|++.+.||.+++||++..+.-...+.. ...+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999999873 356677899999999999866789999999999999999966543333322 2457888999
Q ss_pred ec-CCCEEEEEeCC-CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc-----
Q 019847 153 SN-EGNLLASGGDD-NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT----- 225 (335)
Q Consensus 153 ~~-~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----- 225 (335)
++ |.+++|+-..| ..|.|.|+|.+ ..++..+.+|.+.|+.++|.|.....+++++ .|....+||+...-
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P--~tpva~L~~H~a~VNgIaWaPhS~~hictaG--DD~qaliWDl~q~~~~~~~ 326 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVP--CTPVARLRNHQASVNGIAWAPHSSSHICTAG--DDCQALIWDLQQMPRENGE 326 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCC--CcceehhhcCcccccceEecCCCCceeeecC--CcceEEEEecccccccCCC
Confidence 98 66788876655 46999999976 3568889999999999999999999999987 99999999997532
Q ss_pred -eEEEeecCCcEeEEEeCCC-Cceeeee
Q 019847 226 -CIHGIDAKAQICGLEWNRH-HKEILSG 251 (335)
Q Consensus 226 -~~~~~~~~~~~~~~~~~~~-~~~~~~~ 251 (335)
++..+..+.+|..+.|++. ...++.+
T Consensus 327 dPilay~a~~EVNqi~Ws~~~~Dwiai~ 354 (364)
T KOG0290|consen 327 DPILAYTAGGEVNQIQWSSSQPDWIAIC 354 (364)
T ss_pred CchhhhhccceeeeeeecccCCCEEEEE
Confidence 2334456778999999964 4455444
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-22 Score=147.79 Aligned_cols=252 Identities=17% Similarity=0.265 Sum_probs=180.0
Q ss_pred eEEEEEecCCce-------eeEEeec-CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee-Eeeec-----ccccc
Q 019847 37 VLFLWKWENGKV-------KKLLQVP-GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL-VRNLE-----GHHRR 102 (335)
Q Consensus 37 ~i~vw~~~~~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~-----~~~~~ 102 (335)
.+.||.+....- ..+-.+. .+-+.|.|+.|.|++..+++-. |..|.+|+++.+.. +..+. .+...
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ 172 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHS 172 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccce
Confidence 678999864321 1122222 3445899999999999998886 78999999987655 33332 24567
Q ss_pred eeEeeecC-CCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCC-CEEEEEeCCCeEEEEEccCCCccc
Q 019847 103 VATSSWNH-WNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG-NLLASGGDDNVVRIWERSKMSSSK 180 (335)
Q Consensus 103 v~~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 180 (335)
.++-+|+| .+++.+++ ..|+++..||+++..+...+-..|...|..+.|+|+. .+|++|+.||.|++||.|.. ..
T Consensus 173 ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--k~ 249 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--KF 249 (370)
T ss_pred ecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--Cc
Confidence 88889999 45666655 5589999999999888888888999999999999964 57889999999999999875 45
Q ss_pred ceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCC
Q 019847 181 SLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDG 260 (335)
Q Consensus 181 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (335)
+++.+.+|...|.++.|+|....|+.+++ .|..|.+|....-.....+.... +....- ..+
T Consensus 250 pv~el~~HsHWvW~VRfn~~hdqLiLs~~--SDs~V~Lsca~svSSE~qi~~~~---------dese~e--------~~d 310 (370)
T KOG1007|consen 250 PVQELPGHSHWVWAVRFNPEHDQLILSGG--SDSAVNLSCASSVSSEQQIEFED---------DESESE--------DED 310 (370)
T ss_pred cccccCCCceEEEEEEecCccceEEEecC--CCceeEEEecccccccccccccc---------ccccCc--------chh
Confidence 78889999999999999999999999987 99999999875432222221111 000000 000
Q ss_pred CeEEEEECCCCceeecccCCCCceeEeEEcCCCCE-EEEEeCCCcEEEEecCC
Q 019847 261 NKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLT-VATAGADETIRFWEAFG 312 (335)
Q Consensus 261 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~v~iw~~~~ 312 (335)
..=++= .-....+.++..|...|.+++||.-..+ +|+-+.||++.|=++..
T Consensus 311 seer~k-pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 311 SEERVK-PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hHHhcc-cccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 000000 1112234567789999999999986654 56779999998766543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=147.27 Aligned_cols=249 Identities=17% Similarity=0.249 Sum_probs=188.8
Q ss_pred eEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec-ccccceeEeeecCCCCCEEEEeeCCCcEEEE
Q 019847 50 KLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE-GHHRRVATSSWNHWNGHILTSGSKDKSIINH 128 (335)
Q Consensus 50 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~ 128 (335)
+.+.+.+|.+.++++.|..+++ |.+|...|.|++|++++.+.+..++ .+...|+.+.-.| + ..+.+-+.|+.+.+|
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLILW 82 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEEE
Confidence 3556668999999999987764 9999999999999999999888888 5778899998887 4 778889999999999
Q ss_pred ecccCCee-----------------------e-EE----------------------------eecCCCCEEEEEeec-C
Q 019847 129 DVRVSNNV-----------------------T-SC----------------------------IKAHSGEVCGLKWSN-E 155 (335)
Q Consensus 129 d~~~~~~~-----------------------~-~~----------------------------~~~~~~~i~~~~~~~-~ 155 (335)
++....-+ . +. ..+..+.+.+..+.. +
T Consensus 83 ~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c 162 (323)
T KOG0322|consen 83 TIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC 162 (323)
T ss_pred EccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence 98531100 0 00 001223455555432 2
Q ss_pred C--CEEEEEeCCCeEEEEEccCCCc-------ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC--
Q 019847 156 G--NLLASGGDDNVVRIWERSKMSS-------SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-- 224 (335)
Q Consensus 156 ~--~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-- 224 (335)
+ -++++|.++|.+.+||+..... .+.......|..+|.++.+.+.-..=+. ++ .+..+..|++...
T Consensus 163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGis-gg--a~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGIS-GG--ADDKLVMYSLNHSTG 239 (323)
T ss_pred cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcC-CC--ccccceeeeeccccC
Confidence 2 2577888999999999987421 2334445678999999999865433333 22 6778888887643
Q ss_pred ceE--EEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeC
Q 019847 225 TCI--HGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA 301 (335)
Q Consensus 225 ~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 301 (335)
.+. ..+.. +..+..+..-||++.++++ +-|+.|+||..++.+++..++.|.+.|++++|+|+...+|+++.
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATA------GWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATA------GWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeec------ccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccC
Confidence 222 12222 4468889999999999987 77999999999999999999999999999999999999999999
Q ss_pred CCcEEEEec
Q 019847 302 DETIRFWEA 310 (335)
Q Consensus 302 dg~v~iw~~ 310 (335)
|++|.+|++
T Consensus 314 D~rISLWkL 322 (323)
T KOG0322|consen 314 DARISLWKL 322 (323)
T ss_pred CceEEeeec
Confidence 999999987
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.8e-22 Score=147.37 Aligned_cols=202 Identities=27% Similarity=0.377 Sum_probs=164.4
Q ss_pred cceeeeecCC-ceEEEecCCeEEEEEecCCcee-eEEee---cCCCCCceEEEEcC--CCCEEEEEECCCcEEEEeCCCc
Q 019847 18 YSKVIDWGRN-NVLAVALGPVLFLWKWENGKVK-KLLQV---PGEDDYPTSVSWSH--DAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~-~~~~~---~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
.+.|+.|.|+ .-+++-.+..|.+|+++.+..+ ..... .+|....++-+|+| +++.+++. .|+++..||+++.
T Consensus 125 ~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTM 203 (370)
T ss_pred ceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccch
Confidence 6789999996 3445556999999999876642 22211 23566778889999 78888877 4889999999998
Q ss_pred eeEeeec-ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeE
Q 019847 91 KLVRNLE-GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVV 168 (335)
Q Consensus 91 ~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i 168 (335)
+....+. .|...|..+.|+|+...+|++|+.||.|++||.+..+.++..+.+|...|.++.|+| ..+++++|+.|..|
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAV 283 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCcee
Confidence 7776665 677899999999988889999999999999999998888999999999999999999 56789999999999
Q ss_pred EEEEccCCC--------------------------cccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC
Q 019847 169 RIWERSKMS--------------------------SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ 222 (335)
Q Consensus 169 ~iwd~~~~~--------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 222 (335)
.+|...... ....+.++..|...|++++|+.-.+.++++-+ .||.+.|=.+.
T Consensus 284 ~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS--YDGRviIs~V~ 361 (370)
T KOG1007|consen 284 NLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS--YDGRVIISSVP 361 (370)
T ss_pred EEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec--cCceEEeecCC
Confidence 999643211 01124567789999999999999999999988 99999886654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-21 Score=164.98 Aligned_cols=286 Identities=18% Similarity=0.267 Sum_probs=206.0
Q ss_pred ceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeec-CCCCCceEEEEcC--CCCEEEEEECCCcEEEEeCC-----
Q 019847 19 SKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVP-GEDDYPTSVSWSH--DAKTLAVGYMDSKLQLWDAE----- 88 (335)
Q Consensus 19 ~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~----- 88 (335)
...+.+++ ..++++.....|++||.+.++....+... .....|+.+.+-. |..++++|+.||.|+||+-.
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~ 1146 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK 1146 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccC
Confidence 44566666 34455545679999999999875544432 1345688888865 55689999999999999742
Q ss_pred CceeEeeeccc-------ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEE
Q 019847 89 TSKLVRNLEGH-------HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLA 160 (335)
Q Consensus 89 ~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 160 (335)
+.+++..+.+- .+.=.-+.|....| +|++++.-..|++||......+.....+....++++.-+. .|+.++
T Consensus 1147 ~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1147 KPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred CceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence 23344333221 11224567877444 4555555889999999877666665556666778776544 579999
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCCCCC--eeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEe--e----c
Q 019847 161 SGGDDNVVRIWERSKMSSSKSLHRFTDHCGG--VKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI--D----A 232 (335)
Q Consensus 161 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~--~----~ 232 (335)
+|..||.|++||.+.......+.....|+.. |..+.+.+.|-.-+++++ .||.|++||++.......+ . -
T Consensus 1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs--~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS--QDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec--cCCeEEEEecccCcccccceeeecccc
Confidence 9999999999999987666667777888877 999999998766566665 9999999999974222222 1 1
Q ss_pred CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC-------CCceeEeEEcCCCCEEEEEeCCCcE
Q 019847 233 KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS-------NSRILDLSQSPDGLTVATAGADETI 305 (335)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~dg~v 305 (335)
++..+++..+++...+++| +. +.|+||++.. +.+..++.+ .+.+.+++|+|..-++|+|+.|..|
T Consensus 1304 Gs~lTal~VH~hapiiAsG------s~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASG------SA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred CccceeeeeccCCCeeeec------Cc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence 3358999999999999987 33 9999999754 333333322 3457999999999999999999999
Q ss_pred EEEecCCCCC
Q 019847 306 RFWEAFGPSG 315 (335)
Q Consensus 306 ~iw~~~~~~~ 315 (335)
.||....+..
T Consensus 1376 ~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1376 SIYSCEKPRL 1385 (1387)
T ss_pred EEeecCCcCC
Confidence 9998876543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=150.72 Aligned_cols=258 Identities=15% Similarity=0.275 Sum_probs=191.7
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC------ceeEeeecc-cccceeEeeecCCCCCEEEEeeCCCcE
Q 019847 53 QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET------SKLVRNLEG-HHRRVATSSWNHWNGHILTSGSKDKSI 125 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~------~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i 125 (335)
.+.+|.+.|.++.|+.++++|++|+.|-.+++|+++. .+++..... |...|.|++|.. .+..+++|..+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCccee
Confidence 3458999999999999999999999999999999853 355554443 458999999998 88999999999999
Q ss_pred EEEecccCCeeeEEe-ecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcE
Q 019847 126 INHDVRVSNNVTSCI-KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNV 204 (335)
Q Consensus 126 ~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 204 (335)
...|+++.+.+.... ....+.|+.+..+|..+.|++.+.+|.|.+||.+.......+............+.|+|..+.|
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 999999776533221 1223589999999998999999999999999998765333333344455667889999999999
Q ss_pred EEEecCCCCCeEEEEECCCCce-EEE------eec-CCcEeEEEeCCCCceeeee-------------------------
Q 019847 205 LATGGGREDGCIKIWNVQKGTC-IHG------IDA-KAQICGLEWNRHHKEILSG------------------------- 251 (335)
Q Consensus 205 ~~~~~g~~d~~i~i~d~~~~~~-~~~------~~~-~~~~~~~~~~~~~~~~~~~------------------------- 251 (335)
+++.+ ..+-+-+||.+..+. +.. ++. ...-....|+|.|..+++-
T Consensus 210 i~~~~--~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~ 287 (609)
T KOG4227|consen 210 ILVNS--ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP 287 (609)
T ss_pred EEecc--ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence 99987 888999999875421 100 000 1112333444444333221
Q ss_pred -----------------eeeeeecCCCeEEEEECCCC-----------------------ceeecccCCCCceeEeEEcC
Q 019847 252 -----------------HGFSASGDGNKLCLWKYPNM-----------------------TKVGELQSSNSRILDLSQSP 291 (335)
Q Consensus 252 -----------------~~~~~~~~~~~i~i~d~~~~-----------------------~~~~~~~~~~~~i~~~~~~~ 291 (335)
..+++++++-.|++|.+... +.+..+++|.+-++.+.|+|
T Consensus 288 ~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~ 367 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ 367 (609)
T ss_pred CcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC
Confidence 11456788999999987531 12334678999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCC
Q 019847 292 DGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 292 ~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
...+|++.+-...+++|.-...
T Consensus 368 H~~~l~SSGVE~~~KlWS~~r~ 389 (609)
T KOG4227|consen 368 HNNLLVSSGVENSFKLWSDHRL 389 (609)
T ss_pred CcceEeccchhhheeccccccC
Confidence 9999999999999999975543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-20 Score=156.92 Aligned_cols=265 Identities=27% Similarity=0.512 Sum_probs=207.5
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce-eEeeeccccc-ceeEeee-cCCCCC-EEEEeeC-CCcEEEE
Q 019847 54 VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK-LVRNLEGHHR-RVATSSW-NHWNGH-ILTSGSK-DKSIINH 128 (335)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~~-~l~~~~~-dg~i~~~ 128 (335)
...|...+..+.+.+.+..++.++.|+.+.+|+...+. ....+..... .+..+.+ .+ ++. .++..+. |+.+.+|
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP-DGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECC-CcceEEeccCCCCccEEEE
Confidence 44688999999999999999999999999999998886 6666665443 6777777 66 555 5555444 9999999
Q ss_pred ecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC-CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEE
Q 019847 129 DVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD-DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207 (335)
Q Consensus 129 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 207 (335)
+..........+..|...|..++|+|++..+++++. |+.+++|++.. ...+..+..|...+.+++|+|++..++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT---GKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC---CceEEeeccCCCceEEEEEcCCcceEEEE
Confidence 998634556778889999999999999998888886 99999999876 34566677799999999999998745555
Q ss_pred ecCCCCCeEEEEECCCCceEE-EeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce-eecccCCCCcee
Q 019847 208 GGGREDGCIKIWNVQKGTCIH-GIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK-VGELQSSNSRIL 285 (335)
Q Consensus 208 ~~g~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~ 285 (335)
++ .|+.+++||...+.... .+..+.......|+|++..++++ +.++.+++|+...... +..+..|...+.
T Consensus 217 ~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 288 (466)
T COG2319 217 GS--SDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASG------SSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288 (466)
T ss_pred ec--CCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEe------cCCCcEEEeeecCCCcEEEEEecCCccEE
Confidence 44 89999999999887777 45554433222799999666644 7899999999987665 444467888999
Q ss_pred EeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcc--ccccccccce
Q 019847 286 DLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSV--SHLAGLVSLK 330 (335)
Q Consensus 286 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~i~~~~ 330 (335)
++.|+|++..+++++.|+.+.+|+........... .|...+..+.
T Consensus 289 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (466)
T COG2319 289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335 (466)
T ss_pred EEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEE
Confidence 99999988889889999999999888766544443 4544444444
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=150.64 Aligned_cols=228 Identities=17% Similarity=0.308 Sum_probs=176.4
Q ss_pred CCeEEEEEe-cCCceeeE-EeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCCc-------eeEeeeccccccee
Q 019847 35 GPVLFLWKW-ENGKVKKL-LQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAETS-------KLVRNLEGHHRRVA 104 (335)
Q Consensus 35 ~~~i~vw~~-~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~ 104 (335)
+|...+.-+ ++|+.... -...+|+.+|..++|+| +...||+|+.|.+|.||++..+ +++..+.+|...|-
T Consensus 56 Ggaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg 135 (472)
T KOG0303|consen 56 GGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVG 135 (472)
T ss_pred CcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEE
Confidence 334444443 23443222 23468999999999999 6678899999999999998654 45677889999999
Q ss_pred EeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceee
Q 019847 105 TSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHR 184 (335)
Q Consensus 105 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 184 (335)
.++|+|...+.|++++.|..|.+||+.++..++. +. |...|.++.|+.+|.+|++.+.|..|+|||.+++ +.+..
T Consensus 136 ~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~-l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~---~~v~e 210 (472)
T KOG0303|consen 136 LVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALIT-LD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG---TVVSE 210 (472)
T ss_pred EEeecccchhhHhhccCCceEEEEeccCCceeee-cC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC---cEeee
Confidence 9999999999999999999999999998887665 33 9999999999999999999999999999998874 34555
Q ss_pred ccCCCCC-eeEEEecCCCCcEEEEec-CCCCCeEEEEECCCCc---eEEEeecCCcEeEEEeCCCCceeeeeeeeeeecC
Q 019847 185 FTDHCGG-VKALAWSPHQVNVLATGG-GREDGCIKIWNVQKGT---CIHGIDAKAQICGLEWNRHHKEILSGHGFSASGD 259 (335)
Q Consensus 185 ~~~~~~~-v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (335)
-.+|.+. -..+.|-.++. ++++|- ...+..+.+||..+-+ .+..++..+.+.---|+++...+..+ +-.
T Consensus 211 ~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~-----GKG 284 (472)
T KOG0303|consen 211 GVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLC-----GKG 284 (472)
T ss_pred cccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEE-----ecC
Confidence 4566553 45667888886 777653 2357889999876543 34556666777777788888877543 466
Q ss_pred CCeEEEEECCCCce
Q 019847 260 GNKLCLWKYPNMTK 273 (335)
Q Consensus 260 ~~~i~i~d~~~~~~ 273 (335)
|+.|+-|.+.+..+
T Consensus 285 D~~IRYyEit~d~P 298 (472)
T KOG0303|consen 285 DSSIRYFEITNEPP 298 (472)
T ss_pred CcceEEEEecCCCc
Confidence 99999999876553
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.4e-21 Score=147.90 Aligned_cols=235 Identities=21% Similarity=0.306 Sum_probs=177.3
Q ss_pred CCCEEEEE---ECCCcEEEEeCC-Ccee---EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC------e
Q 019847 69 DAKTLAVG---YMDSKLQLWDAE-TSKL---VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN------N 135 (335)
Q Consensus 69 ~~~~l~~~---~~dg~i~iw~~~-~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------~ 135 (335)
+.+++|.. +..|...+.-+. +|+. .-.+.+|.++|..++|+|.+.+.|++|+.|.+|.+|.+..+. .
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte 122 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE 122 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence 45566553 233455555443 3433 234678999999999999999999999999999999997543 2
Q ss_pred eeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC
Q 019847 136 VTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG 214 (335)
Q Consensus 136 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 214 (335)
....+.+|...|--++|+| -.+.|++++.|..|.+||+.++.. +.++. |...|.++.|+.+|..+.+++ .|.
T Consensus 123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea---li~l~-hpd~i~S~sfn~dGs~l~Ttc---kDK 195 (472)
T KOG0303|consen 123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA---LITLD-HPDMVYSMSFNRDGSLLCTTC---KDK 195 (472)
T ss_pred ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce---eeecC-CCCeEEEEEeccCCceeeeec---ccc
Confidence 4567889999999999999 567899999999999999887543 44454 999999999999997666655 899
Q ss_pred eEEEEECCCCceEEEeecC--CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee---ecccCCCCceeEeEE
Q 019847 215 CIKIWNVQKGTCIHGIDAK--AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV---GELQSSNSRILDLSQ 289 (335)
Q Consensus 215 ~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~---~~~~~~~~~i~~~~~ 289 (335)
.|||||.++++.+..-..+ .....+.|-.++..+.+|. +...+..+.+||..+.+.. .++... +.|.---|
T Consensus 196 kvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf---sr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFy 271 (472)
T KOG0303|consen 196 KVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF---SRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFY 271 (472)
T ss_pred eeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc---ccccccceeccCcccccCcceeEEeccC-CceEEeee
Confidence 9999999999998877543 2455677888888666663 2345889999998775543 233333 34555567
Q ss_pred cCCCCEEEEE-eCCCcEEEEecCCCC
Q 019847 290 SPDGLTVATA-GADETIRFWEAFGPS 314 (335)
Q Consensus 290 ~~~~~~l~~~-~~dg~v~iw~~~~~~ 314 (335)
.+|..++..+ -.|+.||.|++....
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEecCCC
Confidence 8887776554 579999999998765
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.5e-19 Score=150.34 Aligned_cols=285 Identities=27% Similarity=0.511 Sum_probs=215.1
Q ss_pred cccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCC-CCceEEEE-cCCCC-EEEEEEC-CCcEEEEeC
Q 019847 14 MEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGED-DYPTSVSW-SHDAK-TLAVGYM-DSKLQLWDA 87 (335)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~~-~l~~~~~-dg~i~iw~~ 87 (335)
.....+..+.+... .++.++.++.+.+|+...+. .....+..+. ..+..+.+ ++++. +++..+. |+.+.+|+.
T Consensus 63 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 141 (466)
T COG2319 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDL 141 (466)
T ss_pred eccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEe
Confidence 44556667777763 35555579999999998876 1122333322 36777777 88887 5555444 999999999
Q ss_pred CC-ceeEeeecccccceeEeeecCCCCCEEEEeeC-CCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCC-EEEEEeC
Q 019847 88 ET-SKLVRNLEGHHRRVATSSWNHWNGHILTSGSK-DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN-LLASGGD 164 (335)
Q Consensus 88 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~ 164 (335)
.. ......+..|...|..+.|+| ++..+++++. ++.+++|+..... ....+..|...+.+++|+|++. .+++++.
T Consensus 142 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 142 STPGKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred cCCCeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 98 788888999999999999999 7778888885 9999999998633 4566677999999999999988 5555589
Q ss_pred CCeEEEEEccCCCccccee-eccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce-EEEe-ecCCcEeEEEe
Q 019847 165 DNVVRIWERSKMSSSKSLH-RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC-IHGI-DAKAQICGLEW 241 (335)
Q Consensus 165 dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~-~~~~~~~~~~~ 241 (335)
|+.|++||... ...+. .+..|.... ...|+|++. ++++++ .|+.+++|+++.... +..+ .+...+.++.|
T Consensus 220 d~~i~~wd~~~---~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 292 (466)
T COG2319 220 DGTIRLWDLST---GKLLRSTLSGHSDSV-VSSFSPDGS-LLASGS--SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292 (466)
T ss_pred CCcEEEEECCC---CcEEeeecCCCCcce-eEeECCCCC-EEEEec--CCCcEEEeeecCCCcEEEEEecCCccEEEEEE
Confidence 99999998763 33444 567777765 448999984 444555 899999999987664 4444 33578999999
Q ss_pred CCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc--CCCCceeEeEEcCCCCEEEEE-eCCCcEEEEecCCCC
Q 019847 242 NRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ--SSNSRILDLSQSPDGLTVATA-GADETIRFWEAFGPS 314 (335)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~-~~dg~v~iw~~~~~~ 314 (335)
.|++..++++ +.|+.+.+|+..+........ .|...+..+.+.+++..++.+ ..|+.+.+|+.....
T Consensus 293 ~~~~~~~~~~------~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 293 SPDGKLLASG------SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCCCCEEEEe------eCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 9988888775 456889999998887776665 787789999994332456555 688999999998877
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-21 Score=146.17 Aligned_cols=228 Identities=18% Similarity=0.309 Sum_probs=170.8
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCC-CEEEEEECCCcEEEEeCCCceeEeee---cccccce
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDA-KTLAVGYMDSKLQLWDAETSKLVRNL---EGHHRRV 103 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~v 103 (335)
.+++++.-|.|+|.|+.+++... .+.+|...|+.+.+.|+. +++++++.|..|++|++++..++..+ .+|...|
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~--~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV 184 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSK--NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV 184 (385)
T ss_pred eEEeecceeEEEEEecchhhhcc--ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence 35566688999999999998755 455899999999999954 78899999999999999999998876 5799999
Q ss_pred eEeeecCCCCCEEEEeeCCCcEEEEecccCCe---------------------------eeEEeecCCCCEEEEEeecCC
Q 019847 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSNN---------------------------VTSCIKAHSGEVCGLKWSNEG 156 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---------------------------~~~~~~~~~~~i~~~~~~~~~ 156 (335)
.++.|++ ++..|++++.|.++++|++...+- .......|...|.|+.|- |
T Consensus 185 LSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g 261 (385)
T KOG1034|consen 185 LSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G 261 (385)
T ss_pred EEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h
Confidence 9999999 999999999999999999973210 001223466666677765 4
Q ss_pred CEEEEEeCCCeEEEEEccCCCc-----------ccceeeccCCCCCeeEE--EecCCCCcEEEEecCCCCCeEEEEECCC
Q 019847 157 NLLASGGDDNVVRIWERSKMSS-----------SKSLHRFTDHCGGVKAL--AWSPHQVNVLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 157 ~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 223 (335)
+++++=+-++.|..|.....+. ...+..+.-....|.-+ +|.|-++ +++.+. ..|.+.+||++.
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gn--q~g~v~vwdL~~ 338 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGN--QSGKVYVWDLDN 338 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhcc--CCCcEEEEECCC
Confidence 6899988899999998621111 11123333334445544 4456564 556655 899999999998
Q ss_pred CceEE--Eee---cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC
Q 019847 224 GTCIH--GID---AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269 (335)
Q Consensus 224 ~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 269 (335)
.++.. ++. ....|...+|+.++..++.. .+|+.|.-||..
T Consensus 339 ~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~v------cdd~~Vwrwdrv 383 (385)
T KOG1034|consen 339 NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLV------CDDGTVWRWDRV 383 (385)
T ss_pred CCCccCceEEeccccceeeeeeecccCcEEEEE------eCCCcEEEEEee
Confidence 76632 222 34578999999999998876 679999999853
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-19 Score=154.95 Aligned_cols=287 Identities=15% Similarity=0.212 Sum_probs=209.0
Q ss_pred ceeeeecC-CceEEEecCCeEEEEEecCCceeeEEe---ecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC----c
Q 019847 19 SKVIDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQ---VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET----S 90 (335)
Q Consensus 19 ~~~~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~ 90 (335)
..++..++ +.+.....+..+.+|+..++. ..... -..|...+++.+++|+++++|+|..||.|.+|.--. .
T Consensus 163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred CccEEEcCCceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 45666666 456667788899999988755 11111 134777799999999999999999999999996432 1
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
.....+.-|..+|.+++|++ +|.+|++|+..|.+.+|.+.+++ .+.+..-.++|..+.++||+.+.+....|..|.+
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred ccceEEEecccccceeEEec-CCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEE
Confidence 23445667889999999999 99999999999999999999877 5556677889999999999999999999999999
Q ss_pred EEccCCCcccceeeccCC--------CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec----------
Q 019847 171 WERSKMSSSKSLHRFTDH--------CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA---------- 232 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---------- 232 (335)
....+......+..+... .+-.+.++++|.-..++..+ ..|.|.+||+.+.+.+..+..
T Consensus 319 i~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~---~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~ 395 (792)
T KOG1963|consen 319 IKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG---HPGHVQFYDLYTDSTIYKLQVCDENYSDGDV 395 (792)
T ss_pred EeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecC---CCceEEEEeccccceeeeEEEEeecccCCcc
Confidence 887554443333333322 34467788999544444444 799999999987766655431
Q ss_pred --CCcEeEEEeCCCCceeeeee-----------------------------------------------------eeeee
Q 019847 233 --KAQICGLEWNRHHKEILSGH-----------------------------------------------------GFSAS 257 (335)
Q Consensus 233 --~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------~~~~~ 257 (335)
.-.++.++.+..|.++++.- .++++
T Consensus 396 n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta 475 (792)
T KOG1963|consen 396 NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTA 475 (792)
T ss_pred eeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEe
Confidence 11344555555555555430 14466
Q ss_pred cCCCeEEEEECCCCcee----------ecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 258 GDGNKLCLWKYPNMTKV----------GELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 258 ~~~~~i~i~d~~~~~~~----------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+.||.+++|-+...+.+ ..-.-|..++++++|+.||.. ++.+.|+.|.+||..+.
T Consensus 476 ~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsl-la~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 476 SVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSL-LAVSFDDTITIWDYDTK 540 (792)
T ss_pred ccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcE-EEEecCCEEEEecCCCh
Confidence 78999999988432211 111136788999999999965 45667889999999985
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-20 Score=139.91 Aligned_cols=232 Identities=16% Similarity=0.258 Sum_probs=178.7
Q ss_pred ccceeeeecCC-ceEEE-ecCCeEEEEEecCCc-eeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeC-CCc--
Q 019847 17 YYSKVIDWGRN-NVLAV-ALGPVLFLWKWENGK-VKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDA-ETS-- 90 (335)
Q Consensus 17 ~~~~~~~~~~~-~~~~~-~~~~~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~-~~~-- 90 (335)
.+++|.+|+.+ ..++. .....|.||.....+ .....++..|...|++++|+|..+.|++++.|..-++|.. ..+
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W 90 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW 90 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence 46889999986 34444 466799999998887 6777788899999999999999999999999999999998 333
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee---eEEeecCCCCEEEEEeecCCCEEEEEeCCCe
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV---TSCIKAHSGEVCGLKWSNEGNLLASGGDDNV 167 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 167 (335)
++.-.+..++...+++.|+| .++.|++|+....|.+|-++..+.- ..+...+.+.|+++.|+|++-+|++|+.|+.
T Consensus 91 kptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k 169 (361)
T KOG1523|consen 91 KPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK 169 (361)
T ss_pred ccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence 34445667899999999999 9999999999999999988754421 2234467889999999999999999999999
Q ss_pred EEEEEcc-----CCC----------cccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc-eEEEee
Q 019847 168 VRIWERS-----KMS----------SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT-CIHGID 231 (335)
Q Consensus 168 i~iwd~~-----~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~ 231 (335)
.++|..- +.. -+..+..+....+.+..+.|+|+|..+...+ .|..+.+-|..... .+....
T Consensus 170 ~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~---Hds~v~~~da~~p~~~v~~~~ 246 (361)
T KOG1523|consen 170 CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG---HDSTVSFVDAAGPSERVQSVA 246 (361)
T ss_pred eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec---CCCceEEeecCCCchhccchh
Confidence 9998631 111 0112333334667899999999998877776 79999999987664 222222
Q ss_pred -cCCcEeEEEeCCCCceeeeee
Q 019847 232 -AKAQICGLEWNRHHKEILSGH 252 (335)
Q Consensus 232 -~~~~~~~~~~~~~~~~~~~~~ 252 (335)
..-+..++.|-.+...+..|.
T Consensus 247 ~~~lP~ls~~~ise~~vv~ag~ 268 (361)
T KOG1523|consen 247 TAQLPLLSVSWISENSVVAAGY 268 (361)
T ss_pred hccCCceeeEeecCCceeecCC
Confidence 235677777777766666654
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-20 Score=134.95 Aligned_cols=235 Identities=14% Similarity=0.194 Sum_probs=172.2
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEeCCC---------c-eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEe
Q 019847 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAET---------S-KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHD 129 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 129 (335)
.|..-+++|.+++|++|..+|.|.+..+.. + ..+-..++|.+++..++|. ..+|++|+. |.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeeccC-ceEEEee
Confidence 466778999999999999999999998753 1 2334457899999999995 567777664 9999998
Q ss_pred cccCCee------e-EEeecC-----CCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEe
Q 019847 130 VRVSNNV------T-SCIKAH-----SGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAW 197 (335)
Q Consensus 130 ~~~~~~~------~-~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 197 (335)
.+...+- . .....| -..|+++...|..+-++.++.|+.++-||+++ ++....+.+|.+.+.++.-
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~---G~i~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED---GRIQREYRGHTDYVHSVVG 164 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC---CEEEEEEcCCcceeeeeee
Confidence 7643321 0 011112 24688999999777777777899999999887 4567788999999999988
Q ss_pred cCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeE---------EEeCCCCceeeeeeeeeeecCCCeEEEEEC
Q 019847 198 SPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICG---------LEWNRHHKEILSGHGFSASGDGNKLCLWKY 268 (335)
Q Consensus 198 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 268 (335)
-.....+++ |+ +||++|+||.++++.+..++....-.. .+..-+...+++ +....+.+|.+
T Consensus 165 R~~~~qils-G~--EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvC-------GgGp~lslwhL 234 (325)
T KOG0649|consen 165 RNANGQILS-GA--EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVC-------GGGPKLSLWHL 234 (325)
T ss_pred cccCcceee-cC--CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEe-------cCCCceeEEec
Confidence 554545555 33 999999999999999988864322111 223334445554 45788999999
Q ss_pred CCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 269 PNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
+..++...+. -..++..+.|..| .++++++...|.-|.+.+--
T Consensus 235 rsse~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl 277 (325)
T KOG0649|consen 235 RSSESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVL 277 (325)
T ss_pred cCCCceEEEe-cccceeEeeeecc--eEEEeccccceeeeeeccEE
Confidence 9988877664 2345777888665 67888888889999887643
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-18 Score=135.26 Aligned_cols=241 Identities=13% Similarity=0.199 Sum_probs=183.6
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCC--CcEEEEecccCCe
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD--KSIINHDVRVSNN 135 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~~~d~~~~~~ 135 (335)
...+..+.|+.+...|..|+.|| .++|+.+..............|..+-|+ ..+++..+.+ ..+++++.+....
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS---SSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc---cceeEEEecCCCceEEEEEcccCce
Confidence 34567777999999999999997 7888877655433333344567777774 4566655544 3588999875554
Q ss_pred eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe
Q 019847 136 VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215 (335)
Q Consensus 136 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 215 (335)
+... ....+|.++.++.+ .|+++-.+ .|+|||+++......+.....+...+.++.+++.+.++..-++ ...|.
T Consensus 81 ICe~--~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s-~t~Gd 154 (391)
T KOG2110|consen 81 ICEI--FFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS-TTSGD 154 (391)
T ss_pred EEEE--ecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC-CCCce
Confidence 3333 35678999998754 56666654 4999999997766666666566667777777777766666553 45799
Q ss_pred EEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCC-eEEEEECCCCceeecccCCC--CceeEeEEcC
Q 019847 216 IKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGN-KLCLWKYPNMTKVGELQSSN--SRILDLSQSP 291 (335)
Q Consensus 216 i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~ 291 (335)
|.+||..+-+.+..+.. .+++.+++|+++|.+++++ ++.| .||||.+.+++.+.+++... ..|.+++|+|
T Consensus 155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATA------SeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ 228 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATA------SEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP 228 (391)
T ss_pred EEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEe------ccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC
Confidence 99999999999988875 5689999999999999988 4454 58999999999999987543 3588999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCC
Q 019847 292 DGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 292 ~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
++++|++.+..++|++|+++...
T Consensus 229 ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 229 DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CCCeEEEecCCCeEEEEEecccc
Confidence 99999999999999999998754
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=151.02 Aligned_cols=258 Identities=20% Similarity=0.344 Sum_probs=187.1
Q ss_pred ceeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC-------CCCEEEEEECCCcEEEEeCCCc
Q 019847 19 SKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH-------DAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 19 ~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
+.|+.|..+ .++.++.|..+.+|+--+........++.. .-.+.+-.-+ ....++.++.||.+.+.+ +.+
T Consensus 17 vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~d-f~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~-k~~ 94 (737)
T KOG1524|consen 17 VCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDD-FVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN-KSA 94 (737)
T ss_pred EEeecccccceEEEeccCceEEEeecccchhhhhhhCCcc-cCCccccccccccCCCCCcceEEEEcCCceEEEec-ccc
Confidence 357888874 688888888888887544433333333221 1111111111 235788889999999997 467
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
+..+.+..|.+.+.+-.|+| +|.-|+++++||.|++|.-. +-+...+.....+|.|++|.|+.+-++.+. .+.+.|
T Consensus 95 rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSrs--GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~I 170 (737)
T KOG1524|consen 95 RVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSRS--GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISI 170 (737)
T ss_pred hhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEecc--chHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEE
Confidence 88888999999999999999 99999999999999999853 223444556778999999999877666654 456666
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeee
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS 250 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (335)
=.+.. ...+...+.|.+-|.++.|++.+ .++++++ +|-..++||.........-.+..+|++++|.|+ +.++.
T Consensus 171 KpL~~---n~k~i~WkAHDGiiL~~~W~~~s-~lI~sgG--ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v 243 (737)
T KOG1524|consen 171 KPLAA---NSKIIRWRAHDGLVLSLSWSTQS-NIIASGG--EDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLL 243 (737)
T ss_pred eeccc---ccceeEEeccCcEEEEeecCccc-cceeecC--CceeEEeecccCcccccCChhccceeeeeeccc-cceee
Confidence 55443 23355678899999999999998 4788877 999999999764444444456779999999999 44444
Q ss_pred eeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEE
Q 019847 251 GHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRF 307 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 307 (335)
+. -+..++ -+...+.|..++||+||..++.|+..|.+.+
T Consensus 244 ~S-------~nt~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 244 WS-------YNTARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ee-------eeeeee-----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 32 233331 1234567999999999999999999998765
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-21 Score=155.94 Aligned_cols=253 Identities=16% Similarity=0.191 Sum_probs=183.2
Q ss_pred ccceeeeecC--CceEEEecCCeEEEEEec------CCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC
Q 019847 17 YYSKVIDWGR--NNVLAVALGPVLFLWKWE------NGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE 88 (335)
Q Consensus 17 ~~~~~~~~~~--~~~~~~~~~~~i~vw~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 88 (335)
-.++.+.+++ ..+++++.++.+.+|+++ ....++++++.+|..+|.|+++.++++.+.+|+.||+|+.|++.
T Consensus 295 d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p 374 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLP 374 (577)
T ss_pred hhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccC
Confidence 3455566665 578899999999999993 24567888999999999999999999999999999999999764
Q ss_pred Cc----------eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCC-C
Q 019847 89 TS----------KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG-N 157 (335)
Q Consensus 89 ~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 157 (335)
.. .....+.+|.+.++.+++++ ....|++++.||+++.|+......+........+.-.++.+-... .
T Consensus 375 ~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a 453 (577)
T KOG0642|consen 375 PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPA 453 (577)
T ss_pred CCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhH
Confidence 21 23456789999999999999 888899999999999999875544111111112223444443321 1
Q ss_pred EEEEEeCCCeEEEEEccCCCcccceeeccC-------CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEe
Q 019847 158 LLASGGDDNVVRIWERSKMSSSKSLHRFTD-------HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI 230 (335)
Q Consensus 158 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~ 230 (335)
+.++ +.....+++........+..+.. ....+..+.++|.++..+. +. .|+.|+++|..+++++...
T Consensus 454 ~~~~---s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~-~h--ed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 454 HSLA---SFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFT-AH--EDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred hhhh---hcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEe-cc--cCCceecccccccccchhe
Confidence 2222 33344444333332333333221 1234778889999865554 43 8999999999999998877
Q ss_pred ec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCC
Q 019847 231 DA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNS 282 (335)
Q Consensus 231 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 282 (335)
.. ...++++++.|+|.+++++ +.|+.+++|.+.....+.....|..
T Consensus 528 ~a~~~svtslai~~ng~~l~s~------s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 528 VAHKDSVTSLAIDPNGPYLMSG------SHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred eeccceecceeecCCCceEEee------cCCceeehhhccchheeeccccccc
Confidence 64 5679999999999999998 7799999999988888777666643
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-19 Score=153.96 Aligned_cols=233 Identities=13% Similarity=0.093 Sum_probs=163.6
Q ss_pred CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC---CcEEEEeCCCcee--EeeecccccceeEeeec
Q 019847 35 GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD---SKLQLWDAETSKL--VRNLEGHHRRVATSSWN 109 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~--~~~~~~~~~~v~~~~~~ 109 (335)
+..|.+||.+.... ..+..|...+...+|+|||++|+..+.+ ..|++||+.+++. +..+. +....++|+
T Consensus 183 ~~~i~i~d~dg~~~---~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~---g~~~~~~wS 256 (429)
T PRK01742 183 PYEVRVADYDGFNQ---FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR---GHNGAPAFS 256 (429)
T ss_pred eEEEEEECCCCCCc---eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC---CccCceeEC
Confidence 36899999876653 2344677789999999999999987653 3699999988754 33333 334578999
Q ss_pred CCCCCEEEEe-eCCCcEEEE--ecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEe-CCCeEEEEEccCCCcccceeec
Q 019847 110 HWNGHILTSG-SKDKSIINH--DVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGG-DDNVVRIWERSKMSSSKSLHRF 185 (335)
Q Consensus 110 ~~~~~~l~~~-~~dg~i~~~--d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 185 (335)
| +++.|+.+ +.+|.+.+| |+.++. ...+..+...+....|+|||+.|+.++ .+|...+|+++...... ..+
T Consensus 257 P-DG~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~--~~l 331 (429)
T PRK01742 257 P-DGSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA--SLV 331 (429)
T ss_pred C-CCCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe--EEe
Confidence 9 88877765 468876666 544333 344556677788999999999877655 57888888876432211 222
Q ss_pred cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEE
Q 019847 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265 (335)
Q Consensus 186 ~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 265 (335)
.+.. ....|+|+++.+++.+ .+ .+.+||+.+++...... ......+.|+|+|+.++.+ +.++...+
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~---~~-~i~~~Dl~~g~~~~lt~-~~~~~~~~~sPdG~~i~~~------s~~g~~~~ 397 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMIN---GD-NVVKQDLTSGSTEVLSS-TFLDESPSISPNGIMIIYS------STQGLGKV 397 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEc---CC-CEEEEECCCCCeEEecC-CCCCCCceECCCCCEEEEE------EcCCCceE
Confidence 2333 4578999998776664 34 46669999887643322 2234567899999999877 44676777
Q ss_pred EEC--CCCceeecccCCCCceeEeEEcCC
Q 019847 266 WKY--PNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 266 ~d~--~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
|++ .+++....+..|.+.+...+|+|-
T Consensus 398 l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 398 LQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 764 357778888888888999999985
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.4e-20 Score=140.11 Aligned_cols=199 Identities=19% Similarity=0.314 Sum_probs=159.0
Q ss_pred CEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCC-CCCEEEEeeCCCcEEEEecccCCeeeEE-eecCC-CCE
Q 019847 71 KTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW-NGHILTSGSKDKSIINHDVRVSNNVTSC-IKAHS-GEV 147 (335)
Q Consensus 71 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~-~~i 147 (335)
..+|++..+|.|++||..+++.+..+++++..+..+.|... .++.+.+|+.||+|++||++...+..+. ...++ .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 56899999999999999999999999999999999999764 5788999999999999999987654433 33444 467
Q ss_pred EEEEeecCCCEEEEEeC----CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC
Q 019847 148 CGLKWSNEGNLLASGGD----DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 148 ~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 223 (335)
.+++.+-+++.+++|.. +-.|.+||+|..+.. .-.-...|...|+++.|+|..+.++++|+ .||.+.+||+..
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-l~~~~eSH~DDVT~lrFHP~~pnlLlSGS--vDGLvnlfD~~~ 197 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL-LRQLNESHNDDVTQLRFHPSDPNLLLSGS--VDGLVNLFDTKK 197 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccch-hhhhhhhccCcceeEEecCCCCCeEEeec--ccceEEeeecCC
Confidence 77887778888888863 567999999975431 22334679999999999999999999988 999999999976
Q ss_pred Cc----eEEEeecCCcEeEEEeCCCC-ceeeeeeeeeeecCCCeEEEEECCCCceeeccc
Q 019847 224 GT----CIHGIDAKAQICGLEWNRHH-KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ 278 (335)
Q Consensus 224 ~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 278 (335)
.. ++..+.....|..+.|..++ +.+.+- +......+|+++.+.....+.
T Consensus 198 d~EeDaL~~viN~~sSI~~igw~~~~ykrI~cl------TH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 198 DNEEDALLHVINHGSSIHLIGWLSKKYKRIMCL------THMETFAIYELEDGSEETWLE 251 (376)
T ss_pred CcchhhHHHhhcccceeeeeeeecCCcceEEEE------EccCceeEEEccCCChhhccc
Confidence 42 35566677789999999888 223332 568999999999887655443
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-21 Score=164.71 Aligned_cols=252 Identities=17% Similarity=0.319 Sum_probs=193.2
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEeccc
Q 019847 53 QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV 132 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 132 (335)
.+.+|.+.|+|+.|...|.++++|+.|..++||..+++.++....+|.+.|+.++.+. +..++++++.|..|++|.+..
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCC
Confidence 3458999999999999999999999999999999999999999999999999999988 888999999999999999996
Q ss_pred CCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCccc---cee------------------------ec
Q 019847 133 SNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSK---SLH------------------------RF 185 (335)
Q Consensus 133 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~------------------------~~ 185 (335)
+.. +..+.+|.+.|++++|+|-. +.+.||++++||.+-..... +.. ..
T Consensus 264 ~~p-vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 264 GAP-VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred Cch-HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 654 77789999999999999954 67889999999987110000 000 00
Q ss_pred cCCCCCeeEEEecCCCCcEEEEec---------CCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeee
Q 019847 186 TDHCGGVKALAWSPHQVNVLATGG---------GREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFS 255 (335)
Q Consensus 186 ~~~~~~v~~~~~~~~~~~~~~~~~---------g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 255 (335)
......+.+++|.... .++++.+ ...+..+.+|++.+|...+.+..+ ..+..+.++|.+..++..
T Consensus 339 ea~n~e~~~l~~~~~~-lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms---- 413 (1113)
T KOG0644|consen 339 EARNHEFEQLAWRSNL-LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS---- 413 (1113)
T ss_pred ccccchhhHhhhhccc-eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh----
Confidence 0001112223333222 2222222 114567889999999888777654 478889999998887654
Q ss_pred eecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 019847 256 ASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 256 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
++.||...|||+-.+.+++......+.+..-+||+||..++....-|.++|......+.+
T Consensus 414 -ag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 414 -AGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred -ccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence 367999999999999887766544566788899999999998888899999877665443
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=141.31 Aligned_cols=246 Identities=19% Similarity=0.283 Sum_probs=177.1
Q ss_pred ccceeeeecCC---ceEEEecCCeEEEEEecCCc-------eeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEe
Q 019847 17 YYSKVIDWGRN---NVLAVALGPVLFLWKWENGK-------VKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 17 ~~~~~~~~~~~---~~~~~~~~~~i~vw~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 86 (335)
.++..+.+.++ .+++++.|..|++|.++.++ ....-.+..|...|+++.|+|+|+.||+|+.+|.|.+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 34556667663 57778899999999987543 333445678999999999999999999999999999997
Q ss_pred CC--------C--------ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEE
Q 019847 87 AE--------T--------SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGL 150 (335)
Q Consensus 87 ~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~ 150 (335)
.. + ....+.+.+|...|..++|+| ++..+++++.|+.+++||+..+. +...+..|...+..+
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~-l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQ-LLAILDDHEHYVQGV 171 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccce-eEeecccccccccee
Confidence 65 2 123455678999999999999 99999999999999999998655 577788899999999
Q ss_pred EeecCCCEEEEEeCCCeEEEEEccCCCcccc------------------eeeccC--CCCCeeEEEecCCCCc-------
Q 019847 151 KWSNEGNLLASGGDDNVVRIWERSKMSSSKS------------------LHRFTD--HCGGVKALAWSPHQVN------- 203 (335)
Q Consensus 151 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------------------~~~~~~--~~~~v~~~~~~~~~~~------- 203 (335)
+|.|-++++++-+.|...+.+.+........ .+.+.. ...-...++|+|+|..
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 9999888998888887665555432111000 000000 0011222333443321
Q ss_pred --------------------------------------------------------------EEEEecCCCCCeEEEEEC
Q 019847 204 --------------------------------------------------------------VLATGGGREDGCIKIWNV 221 (335)
Q Consensus 204 --------------------------------------------------------------~~~~~~g~~d~~i~i~d~ 221 (335)
+++.+ ..+.+++||.
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA---t~~svyvydt 328 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA---TKNSVYVYDT 328 (434)
T ss_pred eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe---ecceEEEecc
Confidence 22333 3567888888
Q ss_pred CCCceEEEeec--CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 222 QKGTCIHGIDA--KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 222 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
++-.++..... -..++.++|+++|..++.. +.||-..+..++..++
T Consensus 329 q~~~P~~~v~nihy~~iTDiaws~dg~~l~vS------S~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 329 QTLEPLAVVDNIHYSAITDIAWSDDGSVLLVS------STDGFCSLVTFEPWEL 376 (434)
T ss_pred ccccceEEEeeeeeeeecceeecCCCcEEEEe------ccCCceEEEEEcchhc
Confidence 88777766643 4579999999999999877 6788888777665544
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-18 Score=126.65 Aligned_cols=270 Identities=14% Similarity=0.195 Sum_probs=185.2
Q ss_pred eeeeecCCceEEEecCCeEEEEEecCC--------ceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 20 KVIDWGRNNVLAVALGPVLFLWKWENG--------KVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~i~vw~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
.+++.+...++++..+|.|.+..+++- ...++...++|..+|+.++|. ..+|++|+ ||.|+=|..+...
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~ 92 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEE 92 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhh
Confidence 334444456777789999999998631 123455668999999999997 44666665 6999999865432
Q ss_pred e------Eeee--ccc-----ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCE
Q 019847 92 L------VRNL--EGH-----HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNL 158 (335)
Q Consensus 92 ~------~~~~--~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 158 (335)
. +.+. ..+ --.|+++...| ..+-++.++.|+.++-||+++++ +.+.+++|...+.++.--.....
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~-i~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGR-IQREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCE-EEEEEcCCcceeeeeeecccCcc
Confidence 2 1111 111 13688888898 55555555589999999999655 67889999999999998555567
Q ss_pred EEEEeCCCeEEEEEccCCCcccceeecc------CCC-CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee
Q 019847 159 LASGGDDNVVRIWERSKMSSSKSLHRFT------DHC-GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID 231 (335)
Q Consensus 159 l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~-~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 231 (335)
+++|++||++|+||+++.+..+.+...+ .|. ..|.+++.+.+ .+++|+ ...+.+|.++..++...++
T Consensus 171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGg---Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGG---GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecC---CCceeEEeccCCCceEEEe
Confidence 9999999999999998865544433322 222 23566665543 555553 6789999999999999999
Q ss_pred cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCC-CEEEEEeCCCcEEEEe
Q 019847 232 AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDG-LTVATAGADETIRFWE 309 (335)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iw~ 309 (335)
.+.++..+.|..+- ++++ ++.+.+.-|.+. +..-...+......++..|+... +++-.++....+.|+.
T Consensus 245 ipa~v~~v~F~~d~--vl~~------G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 245 IPARVHLVDFVDDC--VLIG------GEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred cccceeEeeeecce--EEEe------ccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 99999999886553 3333 567888888864 33333444333445666665543 4455566667777663
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-19 Score=133.99 Aligned_cols=226 Identities=15% Similarity=0.254 Sum_probs=176.1
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc---eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS---KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN 134 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 134 (335)
..+|+|.+|++|+..+|++..+..|.||..... +...+++.|...|+.++|+| ..+.|++++.|..-++|....+.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCCC
Confidence 568999999999999999999999999998755 46778899999999999999 99999999999999999985443
Q ss_pred e--eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCccc-ceeeccCCCCCeeEEEecCCCCcEEEEecCC
Q 019847 135 N--VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSK-SLHRFTDHCGGVKALAWSPHQVNVLATGGGR 211 (335)
Q Consensus 135 ~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 211 (335)
. ..-.+..+....+++.|+|.++.||+|+.-..|.+|-++..+..- ..+.-+.+.+.|.++.|+|++ -++++|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VLlaaGs-- 165 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VLLAAGS-- 165 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-ceecccc--
Confidence 2 233455688999999999999999999999999999887654431 112234567889999999998 4667665
Q ss_pred CCCeEEEEECC------------------CCceEEEe-ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc
Q 019847 212 EDGCIKIWNVQ------------------KGTCIHGI-DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 212 ~d~~i~i~d~~------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 272 (335)
.|+..|+|..- -|+++.++ ...+-+..+.|+|.|..++-. +.|..+.+-|.....
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv------~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWV------GHDSTVSFVDAAGPS 239 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEe------cCCCceEEeecCCCc
Confidence 89999999641 12233333 345578999999999999866 679999999987665
Q ss_pred -eeecccCCCCceeEeEEcCCC
Q 019847 273 -KVGELQSSNSRILDLSQSPDG 293 (335)
Q Consensus 273 -~~~~~~~~~~~i~~~~~~~~~ 293 (335)
.+..+....-+..++.|-.+.
T Consensus 240 ~~v~~~~~~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 240 ERVQSVATAQLPLLSVSWISEN 261 (361)
T ss_pred hhccchhhccCCceeeEeecCC
Confidence 344444334566777776544
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-19 Score=144.13 Aligned_cols=200 Identities=18% Similarity=0.330 Sum_probs=156.2
Q ss_pred CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEe
Q 019847 27 NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATS 106 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 106 (335)
+.++.++.||.+.+.+- .++... ....|...+.+-.|+|||.-|++++.||.|++|. ++|-+...+.....+|.|+
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~--sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVER--SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhh--hhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 35788889999999874 444433 4468999999999999999999999999999998 4565555666677899999
Q ss_pred eecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeecc
Q 019847 107 SWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFT 186 (335)
Q Consensus 107 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 186 (335)
+|.|+..+.+++.+ +.+.+=.+..... ....+.|.+-|.++.|++..+++++|++|-..++||-. +..+..-.
T Consensus 152 ~W~p~S~~vl~c~g--~h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~----G~~Lf~S~ 224 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG--GHISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ----GANLFTSA 224 (737)
T ss_pred EECCCCCceEEecC--CeEEEeecccccc-eeEEeccCcEEEEeecCccccceeecCCceeEEeeccc----CcccccCC
Confidence 99996677777655 4455555554444 34478999999999999999999999999999999954 35577777
Q ss_pred CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeee
Q 019847 187 DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGH 252 (335)
Q Consensus 187 ~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (335)
.|..+|++++|+|+ .+++.++ -+++|+=. ...+.|..++|++||..++.|.
T Consensus 225 ~~ey~ITSva~npd--~~~~v~S---~nt~R~~~----------p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 225 AEEYAITSVAFNPE--KDYLLWS---YNTARFSS----------PRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred hhccceeeeeeccc--cceeeee---eeeeeecC----------CCccceEEEEEcCCCceeeccc
Confidence 89999999999999 3566553 45555221 1245788999999999998873
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-18 Score=140.18 Aligned_cols=232 Identities=11% Similarity=0.154 Sum_probs=158.1
Q ss_pred EEEECCCcEEEEeCCC-ce--eEeeecccccceeEeeecCCCCCEEEEee-CCCcEEEEecccCCeee-EEeecCCCCEE
Q 019847 74 AVGYMDSKLQLWDAET-SK--LVRNLEGHHRRVATSSWNHWNGHILTSGS-KDKSIINHDVRVSNNVT-SCIKAHSGEVC 148 (335)
Q Consensus 74 ~~~~~dg~i~iw~~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~-~~~~~~~~~i~ 148 (335)
++...++.|++|++.+ ++ .+..+. +.+....+.++| ++++|++++ .++.|.+|++.....+. .......+...
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 3345789999999964 33 444454 346678899999 888876654 58899999997332221 11112334567
Q ss_pred EEEeecCCCEEEEEeC-CCeEEEEEccCCCc-ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce
Q 019847 149 GLKWSNEGNLLASGGD-DNVVRIWERSKMSS-SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC 226 (335)
Q Consensus 149 ~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 226 (335)
.++++|+++++++++. ++.|.+|+++.... ...+.... +......++++|++++++++.. .++.|.+||+.+...
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~--~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCL--KEDRIRLFTLSDDGH 160 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeC--CCCEEEEEEECCCCc
Confidence 8999999998888764 78999999864221 12233222 2234667889999988888776 789999999976432
Q ss_pred EE-------EeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC--C--ceeecccCC------CCceeEeEE
Q 019847 227 IH-------GIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN--M--TKVGELQSS------NSRILDLSQ 289 (335)
Q Consensus 227 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~--~--~~~~~~~~~------~~~i~~~~~ 289 (335)
+. ..........+.|+|+++++++.. ..++.|.+|+++. + +.+..+..+ ......+.+
T Consensus 161 l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~-----~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~ 235 (330)
T PRK11028 161 LVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVN-----ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI 235 (330)
T ss_pred ccccCCCceecCCCCCCceEEECCCCCEEEEEe-----cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence 21 222344567899999999997763 4589999999973 2 223333221 112346889
Q ss_pred cCCCCEEEEEeC-CCcEEEEecCCCCC
Q 019847 290 SPDGLTVATAGA-DETIRFWEAFGPSG 315 (335)
Q Consensus 290 ~~~~~~l~~~~~-dg~v~iw~~~~~~~ 315 (335)
+|++++|+++.. ++.|.+|++.....
T Consensus 236 ~pdg~~lyv~~~~~~~I~v~~i~~~~~ 262 (330)
T PRK11028 236 TPDGRHLYACDRTASLISVFSVSEDGS 262 (330)
T ss_pred CCCCCEEEEecCCCCeEEEEEEeCCCC
Confidence 999999999854 78999999976543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-20 Score=151.20 Aligned_cols=244 Identities=14% Similarity=0.215 Sum_probs=171.7
Q ss_pred eeecCCceEE--EecCCeEEEEEecCCceeeEEeec--CCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCCc------
Q 019847 22 IDWGRNNVLA--VALGPVLFLWKWENGKVKKLLQVP--GEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAETS------ 90 (335)
Q Consensus 22 ~~~~~~~~~~--~~~~~~i~vw~~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~------ 90 (335)
++-+..+.++ ++..|.|-||+++..-..+--.++ -....|+.+.|.| |...||+++.||.|++|.+..+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~ 666 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE 666 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence 4444444333 356899999998754322221121 1356799999999 7789999999999999998754
Q ss_pred -eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEE
Q 019847 91 -KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVR 169 (335)
Q Consensus 91 -~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 169 (335)
.....+..|...|+++.|+|-..+.|++++.|-+|++||+.+... ...+.+|.+.|..++|+|+|+.+|+.+.||+|+
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-hheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 345667889999999999998899999999999999999997665 556889999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCCC-CCeeEEEecCCCCcEEEEec-CCCCCeEEEEECCCCc--eEEEe--ecCCcEeEEEeCC
Q 019847 170 IWERSKMSSSKSLHRFTDHC-GGVKALAWSPHQVNVLATGG-GREDGCIKIWNVQKGT--CIHGI--DAKAQICGLEWNR 243 (335)
Q Consensus 170 iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~--~~~~~--~~~~~~~~~~~~~ 243 (335)
+|..+.... +++.-.+.. ..--.+.|.-+|..++++|- ......|.+||.++-. .+.+. +....+.--.+.+
T Consensus 746 Vy~Prs~e~--pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~ 823 (1012)
T KOG1445|consen 746 VYEPRSREQ--PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDY 823 (1012)
T ss_pred EeCCCCCCC--ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccC
Confidence 999876432 333222211 22346788889988877762 0123578888876532 33222 2222222233455
Q ss_pred CCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 244 HHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
+...++ .++-.|..|.+|.+-...+
T Consensus 824 Ds~~lf-----ltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 824 DSNVLF-----LTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred CCceEE-----EecCCCceEEEEEecCCCc
Confidence 554442 2335688999998755443
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.2e-19 Score=150.19 Aligned_cols=244 Identities=16% Similarity=0.231 Sum_probs=179.2
Q ss_pred ccceeeeecC---CceEEEecCCeEEEEEecCCceeeE----EeecCCCCCceEEEEcCCC--CEEEEEECCCcEEEEeC
Q 019847 17 YYSKVIDWGR---NNVLAVALGPVLFLWKWENGKVKKL----LQVPGEDDYPTSVSWSHDA--KTLAVGYMDSKLQLWDA 87 (335)
Q Consensus 17 ~~~~~~~~~~---~~~~~~~~~~~i~vw~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iw~~ 87 (335)
..+.|+.+++ +.++.++.+|.|.+||+..+..... .....|..+++.+.|..+. .-+++++.||.|..|++
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~ 322 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDT 322 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeec
Confidence 3466677665 4566666899999999987765321 2224688999999997744 44999999999999987
Q ss_pred CCceeE------eeec------ccccceeEeeecCCCCCEEEEeeCCCcEEEEecc---cCC----eeeEEeecCCCCEE
Q 019847 88 ETSKLV------RNLE------GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR---VSN----NVTSCIKAHSGEVC 148 (335)
Q Consensus 88 ~~~~~~------~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~---~~~----~~~~~~~~~~~~i~ 148 (335)
+.-... .... .....+++++|.+.+.+.|+.|+.+|.|.--+.. ... +.......|.++|+
T Consensus 323 ~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~ 402 (555)
T KOG1587|consen 323 DMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVY 402 (555)
T ss_pred cccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceE
Confidence 643221 1111 1235789999999999999999999999873332 222 12334556889999
Q ss_pred EEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc--e
Q 019847 149 GLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT--C 226 (335)
Q Consensus 149 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~ 226 (335)
++.++|=+..++..+.|.+++||.... ...++..+..+...+++++|+|..+.+++++. .||.+.+||+.... +
T Consensus 403 ~v~~nPF~~k~fls~gDW~vriWs~~~--~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d--~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 403 AVSRNPFYPKNFLSVGDWTVRIWSEDV--IASPLLSLDSSPDYVTDVAWSPTRPAVFATVD--GDGNLDIWDLLQDDEEP 478 (555)
T ss_pred eeecCCCccceeeeeccceeEeccccC--CCCcchhhhhccceeeeeEEcCcCceEEEEEc--CCCceehhhhhccccCC
Confidence 999999554444444499999999552 24566777778888999999999999999986 89999999997543 3
Q ss_pred EEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC
Q 019847 227 IHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 227 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
+.+... ....+.+.|++.|+.+++| ...|.+++|++..
T Consensus 479 v~s~~~~~~~l~~~~~s~~g~~lavG------d~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 479 VLSQKVCSPALTRVRWSPNGKLLAVG------DANGTTHILKLSE 517 (555)
T ss_pred cccccccccccceeecCCCCcEEEEe------cCCCcEEEEEcCc
Confidence 333332 3456778889999999998 6799999999853
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-19 Score=149.55 Aligned_cols=233 Identities=13% Similarity=0.153 Sum_probs=158.7
Q ss_pred CCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCC---CcEEEEecccCCeeeEEeecCCCCEEEEEeecC
Q 019847 79 DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD---KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNE 155 (335)
Q Consensus 79 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 155 (335)
+..|.+||..... .+.+..+...+....|+| +++.|+..+.+ ..|++||+.++.... +....+....++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~--l~~~~g~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKV--VASFRGHNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEE--EecCCCccCceeECCC
Confidence 4689999986544 456667788899999999 88888877644 369999998654321 2222333456899999
Q ss_pred CCEEEEEe-CCCeEEEE--EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-ceEEEee
Q 019847 156 GNLLASGG-DDNVVRIW--ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-TCIHGID 231 (335)
Q Consensus 156 ~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~ 231 (335)
|+.|+.+. .+|.+.|| |+... ....+..+...+....|+|+|+.++.++. .++...+|++... .....+.
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~----~~~~lt~~~~~~~~~~wSpDG~~i~f~s~--~~g~~~I~~~~~~~~~~~~l~ 332 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGG----TPSQLTSGAGNNTEPSWSPDGQSILFTSD--RSGSPQVYRMSASGGGASLVG 332 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCC----CeEeeccCCCCcCCEEECCCCCEEEEEEC--CCCCceEEEEECCCCCeEEec
Confidence 99888765 67876665 54332 23444556667889999999988877764 6777888876432 2222232
Q ss_pred cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 232 AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
.. . ....|+|+|+.++.. +. ..+.+||+.+++.......+ ....+.|+|||++|+.++.+|.+.+|.+.
T Consensus 333 ~~-~-~~~~~SpDG~~ia~~------~~-~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 333 GR-G-YSAQISADGKTLVMI------NG-DNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CC-C-CCccCCCCCCEEEEE------cC-CCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 22 2 457899999998765 22 45667999888654322222 23567899999999999999999888864
Q ss_pred C--CCCCCCccccccccccceec
Q 019847 312 G--PSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 312 ~--~~~~~~~~~~~~~i~~~~~~ 332 (335)
. +........|.+.+....++
T Consensus 402 ~~~G~~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 402 SADGRFKARLPGSDGQVKFPAWS 424 (429)
T ss_pred ECCCCceEEccCCCCCCCCcccC
Confidence 3 33444444566666666554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-19 Score=148.46 Aligned_cols=236 Identities=19% Similarity=0.311 Sum_probs=173.8
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE
Q 019847 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC 139 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 139 (335)
.|..++|-|||..|+.+.. ..+.+||.+.|..+..+++|.+.|.+++|+. +|..+++|+.|..|.+|...-.+.+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG~L--- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGIL--- 88 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEeccccccee---
Confidence 7899999999999888764 4799999999999999999999999999999 9999999999999999997644432
Q ss_pred eecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEE
Q 019847 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219 (335)
Q Consensus 140 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~ 219 (335)
...|...|.|+.|+|-.+.|++++-. ..-+|..... .+...+ ....+.+++|..||.++ +.|- .+|+|.+-
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK----~V~K~k-ss~R~~~CsWtnDGqyl-alG~--~nGTIsiR 159 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK----SVSKHK-SSSRIICCSWTNDGQYL-ALGM--FNGTISIR 159 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcchh-hccccChhhh----hHHhhh-hheeEEEeeecCCCcEE-EEec--cCceEEee
Confidence 23699999999999988899998854 4678875532 122211 34568899999999654 4443 79999998
Q ss_pred ECCCCceEEEeec----CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCE
Q 019847 220 NVQKGTCIHGIDA----KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLT 295 (335)
Q Consensus 220 d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 295 (335)
+- +++....++. +.+|.+++|+|....=. ...+++..-..++.+|.+. |+.+..-+.-.-...++.+.++|.+
T Consensus 160 Nk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~-~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy 236 (1081)
T KOG1538|consen 160 NK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGR-NDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEY 236 (1081)
T ss_pred cC-CCCcceEEeCCCCCCCCceEEEecCCCCCCc-cceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcE
Confidence 74 4555444443 45899999999754100 0001112334555555543 4444333333334578999999999
Q ss_pred EEEEeCCCcEEEEecCC
Q 019847 296 VATAGADETIRFWEAFG 312 (335)
Q Consensus 296 l~~~~~dg~v~iw~~~~ 312 (335)
++.|+.|+.+.+|--++
T Consensus 237 ~LiGGsdk~L~~fTR~G 253 (1081)
T KOG1538|consen 237 ILLGGSDKQLSLFTRDG 253 (1081)
T ss_pred EEEccCCCceEEEeecC
Confidence 99999999999886443
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=147.66 Aligned_cols=248 Identities=18% Similarity=0.308 Sum_probs=170.8
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee-cccccceeEeeecCC-CCCEEEEeeCCCcEEEE
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL-EGHHRRVATSSWNHW-NGHILTSGSKDKSIINH 128 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~ 128 (335)
...+.||++.|+|++|+.+|.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-|. ++.++++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3456799999999999999999999999999999999888877776 479999999999985 45678899999999999
Q ss_pred eccc---------CCeeeEEeecCCCCEEEEEeecCC-CEEEEEeCCCeEEEEEccCCCcccc-------eeeccCCCCC
Q 019847 129 DVRV---------SNNVTSCIKAHSGEVCGLKWSNEG-NLLASGGDDNVVRIWERSKMSSSKS-------LHRFTDHCGG 191 (335)
Q Consensus 129 d~~~---------~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~ 191 (335)
|+.. .......+.-|...|..++..|++ +.+.++++||+|+-+|++.+..-.+ +..+...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9974 223344566688889999999977 8999999999999999997432211 1112222334
Q ss_pred eeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC
Q 019847 192 VKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM 271 (335)
Q Consensus 192 v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~ 271 (335)
..++..+|..++++++|+ .|-..++||.+... ..+..... ....|. -.++.++-|.....
T Consensus 203 lk~ltisp~rp~~laVGg--sdpfarLYD~Rr~l--ks~~s~~~---~~~~pp-------------~~~~cv~yf~p~hl 262 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGG--SDPFARLYDRRRVL--KSFRSDGT---MNTCPP-------------KDCRCVRYFSPGHL 262 (758)
T ss_pred eeeeeecCCCCceEEecC--CCchhhhhhhhhhc--cCCCCCcc---ccCCCC-------------cccchhheecCccc
Confidence 678999999999999987 99999999964321 11111100 000010 01122222221111
Q ss_pred ceeec-ccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 272 TKVGE-LQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 272 ~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
+...- ...-...++-++|+|+|.-|+..-..-.|+++|+...+....
T Consensus 263 kn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 263 KNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred cCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 00000 000111367789999997666555555899999988765543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-17 Score=135.79 Aligned_cols=277 Identities=12% Similarity=0.094 Sum_probs=180.2
Q ss_pred ecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCC
Q 019847 33 ALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWN 112 (335)
Q Consensus 33 ~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 112 (335)
..++.|.+.|..+.+....+.. ....-..+.|+|||+++++++.||.|.++|+.+++.+.+++.. .....+++++ +
T Consensus 13 ~~~~~v~viD~~t~~~~~~i~~--~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~-D 88 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVARIPT--GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP-D 88 (369)
T ss_dssp GGGTEEEEEETTT-SEEEEEE---STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE---T
T ss_pred cCCCEEEEEECCCCeEEEEEcC--CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC-C
Confidence 4689999999999887665553 2233345789999999999999999999999999999999854 4578899999 8
Q ss_pred CCEEEEee-CCCcEEEEecccCCeeeEEeec------CCCCEEEEEeecCCCEEEEEeCC-CeEEEEEccCCCcccceee
Q 019847 113 GHILTSGS-KDKSIINHDVRVSNNVTSCIKA------HSGEVCGLKWSNEGNLLASGGDD-NVVRIWERSKMSSSKSLHR 184 (335)
Q Consensus 113 ~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~ 184 (335)
+++++++. .++.+.++|.++.+.+...... ....+..+..+|....++..-.| +.|.+.|....... ....
T Consensus 89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~-~~~~ 167 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL-KVTT 167 (369)
T ss_dssp TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE-EEEE
T ss_pred CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc-ceee
Confidence 88887665 6899999999877654433211 23467788888888866665554 88888887764321 1222
Q ss_pred ccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-------------------------------
Q 019847 185 FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK------------------------------- 233 (335)
Q Consensus 185 ~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~------------------------------- 233 (335)
+ ..........|+|++++++++.. .++.|-++|.++++.+..++..
T Consensus 168 i-~~g~~~~D~~~dpdgry~~va~~--~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~ 244 (369)
T PF02239_consen 168 I-KVGRFPHDGGFDPDGRYFLVAAN--GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIP 244 (369)
T ss_dssp E-E--TTEEEEEE-TTSSEEEEEEG--GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEE
T ss_pred e-cccccccccccCcccceeeeccc--ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecc
Confidence 2 23455678999999998888765 6778989998877655433210
Q ss_pred ------------------------CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC-CceeEeE
Q 019847 234 ------------------------AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN-SRILDLS 288 (335)
Q Consensus 234 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~~~~ 288 (335)
+.-.-+..+|+++++.+.. ..+.+.+.|.++|.++.+.+.++.... ..+..+.
T Consensus 245 ~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~--~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~e 322 (369)
T PF02239_consen 245 LIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDT--FLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHME 322 (369)
T ss_dssp EEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE---TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEE
T ss_pred cccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeec--cCCCCCceEEEEECcCcceeEEEeccCCCcEeccE
Confidence 0012245577777776652 123457899999999998887775332 3588999
Q ss_pred EcCCCCEEEEEeCC--CcEEEEecCCCCCCCCc
Q 019847 289 QSPDGLTVATAGAD--ETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 289 ~~~~~~~l~~~~~d--g~v~iw~~~~~~~~~~~ 319 (335)
|+++|+.+..+..+ |.|.+||..+.+.....
T Consensus 323 f~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 323 FNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp E-TTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 99999977666543 46999999987665543
|
... |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-17 Score=129.05 Aligned_cols=285 Identities=18% Similarity=0.258 Sum_probs=188.7
Q ss_pred cccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCC-CCEEEEEECCCcEEEEeCCCc--
Q 019847 16 DYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHD-AKTLAVGYMDSKLQLWDAETS-- 90 (335)
Q Consensus 16 ~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~-- 90 (335)
......++|++. .+++++.|..|++|+-.+... ..++. ..+..|+|++|-|. ++.|++|+..| |.+|.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p-t~Lks-~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP-TKLKS-VSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC-ceecc-hhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccc
Confidence 455677999984 577788999999999776332 23322 34677999999994 56788887655 999986421
Q ss_pred --ee----------EeeecccccceeEeeecCCCCCEEEEeeC-CCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCC
Q 019847 91 --KL----------VRNLEGHHRRVATSSWNHWNGHILTSGSK-DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157 (335)
Q Consensus 91 --~~----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (335)
+. +..-.+| .+|+++.|.+ ++..+++++. |..|.+||..++....-. ....+.++-+.||||+.
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPDGD 251 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCCCC
Confidence 11 1112233 6899999999 8888888874 678999999977653322 23567788999999999
Q ss_pred EEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC----c--------
Q 019847 158 LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG----T-------- 225 (335)
Q Consensus 158 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~----~-------- 225 (335)
+|.++.-|+..++|+....-. ..+ ..-..+.|...+|+|.|..++.+++ +.-++|.+... .
T Consensus 252 ~lfaAt~davfrlw~e~q~wt--~er-w~lgsgrvqtacWspcGsfLLf~~s----gsp~lysl~f~~~~~~~~~~~~~k 324 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQSWT--KER-WILGSGRVQTACWSPCGSFLLFACS----GSPRLYSLTFDGEDSVFLRPQSIK 324 (445)
T ss_pred EEEEecccceeeeehhcccce--ecc-eeccCCceeeeeecCCCCEEEEEEc----CCceEEEEeecCCCccccCcccce
Confidence 999999999999997554321 111 2223458999999999999998875 44455544211 0
Q ss_pred ---eEEEee----------cCCcEeEEEeCCCCceeeeeeeeee--ecCCCeEEEEECCCCceeeccc-C--CCCceeEe
Q 019847 226 ---CIHGID----------AKAQICGLEWNRHHKEILSGHGFSA--SGDGNKLCLWKYPNMTKVGELQ-S--SNSRILDL 287 (335)
Q Consensus 226 ---~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~i~d~~~~~~~~~~~-~--~~~~i~~~ 287 (335)
++..+. ..+++.+++|+|.|.++++...-.. .--...|.+||.+..-.+.-.. + .......+
T Consensus 325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~I 404 (445)
T KOG2139|consen 325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYI 404 (445)
T ss_pred eeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceE
Confidence 011110 1357889999999999998642000 0012456677766544332221 1 01123445
Q ss_pred EEcC---CCCEEEEEeCCCcEEEEecCCC
Q 019847 288 SQSP---DGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 288 ~~~~---~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+|+| ++.+|..+=..|.+.-|++.-.
T Consensus 405 sF~pl~n~g~lLsiaWsTGriq~ypl~f~ 433 (445)
T KOG2139|consen 405 SFGPLKNEGRLLSIAWSTGRIQRYPLTFQ 433 (445)
T ss_pred EeeecccCCcEEEEEeccCceEeeeeEEE
Confidence 6665 5778888878899988877543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-17 Score=139.47 Aligned_cols=240 Identities=13% Similarity=0.085 Sum_probs=160.3
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC---CCcEEEEeCCCceeEeeecccccceeEeeecCCCC
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM---DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNG 113 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 113 (335)
.|.++|.+....... ..+...+...+|+|||+.|+..+. +..|.+|++.+++... +...........|+| ++
T Consensus 180 ~l~~~d~dg~~~~~l---t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SP-DG 254 (429)
T PRK03629 180 ELRVSDYDGYNQFVV---HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSP-DG 254 (429)
T ss_pred eEEEEcCCCCCCEEe---ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECC-CC
Confidence 799999887664333 235667899999999999987642 4579999998875433 222334456789999 88
Q ss_pred CEEEEe-eCCC--cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC-CeEEEE--EccCCCcccceeeccC
Q 019847 114 HILTSG-SKDK--SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD-NVVRIW--ERSKMSSSKSLHRFTD 187 (335)
Q Consensus 114 ~~l~~~-~~dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iw--d~~~~~~~~~~~~~~~ 187 (335)
+.|+.. +.+| .|++||+.++.. . .+..+...+....|+|||+.|+..+.+ +...+| |+.... ...+..
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~-~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~----~~~lt~ 328 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQI-R-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA----PQRITW 328 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCE-E-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC----eEEeec
Confidence 777654 4455 588899876543 3 334445567889999999988877754 444444 554432 222222
Q ss_pred CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEE
Q 019847 188 HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK 267 (335)
Q Consensus 188 ~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 267 (335)
.........|+|+|+.++.+........|.+||+.+++.. .+..........|+|+|+.++.... .+....+.+++
T Consensus 329 ~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~---~~~~~~l~~~~ 404 (429)
T PRK03629 329 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSS---QGMGSVLNLVS 404 (429)
T ss_pred CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEc---CCCceEEEEEE
Confidence 3344567899999988877664112346889999888643 3333333456889999999887631 01123477788
Q ss_pred CCCCceeecccCCCCceeEeEEcCC
Q 019847 268 YPNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
+ ++.....+..|.+.+...+|+|-
T Consensus 405 ~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 405 T-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred C-CCCCeEECccCCCCcCCcccCCC
Confidence 7 45555667778888899999873
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-17 Score=142.46 Aligned_cols=283 Identities=16% Similarity=0.210 Sum_probs=203.9
Q ss_pred eeecC-CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCC---CEEEEEECCCcEEEEeCCCceeEeeec
Q 019847 22 IDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDA---KTLAVGYMDSKLQLWDAETSKLVRNLE 97 (335)
Q Consensus 22 ~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~ 97 (335)
-.|++ ++.+.+..+..|.||...++++.. .+++|..+++.+.+.|.. .++.+++.+|.|++||...+++++.+.
T Consensus 22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~--~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~ 99 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGNFVKVYSTATGECIT--SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD 99 (792)
T ss_pred cccccCCcEEEEeeCCEEEEEecchHhhhh--hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence 34555 467788889999999999998765 677999999999998854 477899999999999998888777664
Q ss_pred ccccceeEeee-----------------------------------------------------------cCCCCCEEEE
Q 019847 98 GHHRRVATSSW-----------------------------------------------------------NHWNGHILTS 118 (335)
Q Consensus 98 ~~~~~v~~~~~-----------------------------------------------------------~~~~~~~l~~ 118 (335)
.+ .++..+.+ ++ .+. +..
T Consensus 100 ~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~-~ge-~~~ 176 (792)
T KOG1963|consen 100 NN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN-SGE-FKG 176 (792)
T ss_pred cC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC-Cce-EEE
Confidence 22 11111111 11 111 111
Q ss_pred eeCCCcEEEEecccCCee---eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC-CCcccceeeccCCCCCeeE
Q 019847 119 GSKDKSIINHDVRVSNNV---TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK-MSSSKSLHRFTDHCGGVKA 194 (335)
Q Consensus 119 ~~~dg~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~ 194 (335)
...+..+.+|+....... ...-..|...+++.+++|+++++|+|..||.|.+|.--. .......+.+.-|..+|++
T Consensus 177 i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~ 256 (792)
T KOG1963|consen 177 IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS 256 (792)
T ss_pred EEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence 112334455555442211 111234666789999999999999999999999997433 2223345556668899999
Q ss_pred EEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee
Q 019847 195 LAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV 274 (335)
Q Consensus 195 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 274 (335)
+.|+++|.+++..| ..+.+.+|.+.+++...--+...++..+.++|++.+.+.. ..|+.|.+....+.+..
T Consensus 257 L~fS~~G~~LlSGG---~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~------~~DNqI~li~~~dl~~k 327 (792)
T KOG1963|consen 257 LSFSSDGAYLLSGG---REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLV------LEDNQIHLIKASDLEIK 327 (792)
T ss_pred eEEecCCceEeecc---cceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEE------ecCceEEEEeccchhhh
Confidence 99999998666543 8999999999999844444568899999999999988776 45999999988766554
Q ss_pred ecccCC-----------CCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 275 GELQSS-----------NSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 275 ~~~~~~-----------~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
.++.+- .+-.+.++++|.-+.++-.+..|.|++||+.+.....+
T Consensus 328 ~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~ 382 (792)
T KOG1963|consen 328 STISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYK 382 (792)
T ss_pred hhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeee
Confidence 444322 23356788999777788888999999999988766544
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-16 Score=122.71 Aligned_cols=274 Identities=16% Similarity=0.219 Sum_probs=193.9
Q ss_pred ceeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC--CcEEEEeCCCceeEee
Q 019847 19 SKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD--SKLQLWDAETSKLVRN 95 (335)
Q Consensus 19 ~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~ 95 (335)
++.+.|+.+ .+++.+.....++|+.+.... ..........|..+-|+ ..++|..+.+ ..+++++++.+..+..
T Consensus 8 i~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k--~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDGYKIFSCSPFEK--CFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred eeeeeeccceeEEEccCCCceeEEecCchHH--hhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEEE
Confidence 455668875 577777777788998766443 22222223345555565 4456665543 3589999988887777
Q ss_pred ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee--cCCCCEEEEEeecCCCEEEEEe--CCCeEEEE
Q 019847 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK--AHSGEVCGLKWSNEGNLLASGG--DDNVVRIW 171 (335)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iw 171 (335)
+. ...+|.++.+ +.+.|+++-.+. |+|||+++.+.+..... .+...+.++.+++.+.++|.-+ ..|.|.+|
T Consensus 84 ~~-fpt~IL~Vrm---Nr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 84 IF-FPTSILAVRM---NRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred Ee-cCCceEEEEE---ccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 66 5678999999 456666666554 99999997776443322 3566677777777778888643 46899999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC-eEEEEECCCCceEEEeecC---CcEeEEEeCCCCce
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG-CIKIWNVQKGTCIHGIDAK---AQICGLEWNRHHKE 247 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~-~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 247 (335)
|+.+ .++...+..|.+++-+++|+++|. ++++++ +.| .||++.+.+|+.+.+++.+ ..|.+++|+|++.+
T Consensus 159 d~~n---l~~v~~I~aH~~~lAalafs~~G~-llATAS--eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 159 DTIN---LQPVNTINAHKGPLAALAFSPDGT-LLATAS--EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred Eccc---ceeeeEEEecCCceeEEEECCCCC-EEEEec--cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence 9776 456777789999999999999995 777765 555 5899999999999999865 36899999999999
Q ss_pred eeeeeeeeeecCCCeEEEEECCCCce---------------------------eecc----------cCCCC---ceeEe
Q 019847 248 ILSGHGFSASGDGNKLCLWKYPNMTK---------------------------VGEL----------QSSNS---RILDL 287 (335)
Q Consensus 248 ~~~~~~~~~~~~~~~i~i~d~~~~~~---------------------------~~~~----------~~~~~---~i~~~ 287 (335)
|.+. ++.++|++|.+..... +... +...+ .+..+
T Consensus 233 L~~s------S~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l 306 (391)
T KOG2110|consen 233 LAAS------SNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSL 306 (391)
T ss_pred EEEe------cCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEe
Confidence 8876 7899999998753210 0000 00011 12222
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 288 SQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 288 ~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
.-.+...++..++.||.++.|.+...
T Consensus 307 ~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 307 SSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred eccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 22246778999999999999999875
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-19 Score=140.88 Aligned_cols=295 Identities=15% Similarity=0.282 Sum_probs=222.3
Q ss_pred CCCcccccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC--CCCEEEEEECCCcEEEEe
Q 019847 11 PYLMEDYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH--DAKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 11 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~ 86 (335)
.--++...++.+.|+. +.+++++.|..|.+||+..++....+. .+|...|....|-| +...+++++.||.+++=.
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE-SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc-cccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 3345667788899987 356667788999999999888644433 58999999999988 446789999999999887
Q ss_pred CCCcee---EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee--eEEeecCCC---CEEEEEeec-CCC
Q 019847 87 AETSKL---VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV--TSCIKAHSG---EVCGLKWSN-EGN 157 (335)
Q Consensus 87 ~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--~~~~~~~~~---~i~~~~~~~-~~~ 157 (335)
+..... ...+..|.++|.-++.-|.....|.+++.|+.+.-+|++..... ......+.. ....++..| +..
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence 653322 34566799999999999988999999999999999999876542 222333444 567888888 455
Q ss_pred EEEEEeCCCeEEEEEccCCCcc---cceeecc------CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC--C--
Q 019847 158 LLASGGDDNVVRIWERSKMSSS---KSLHRFT------DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK--G-- 224 (335)
Q Consensus 158 ~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~-- 224 (335)
.+++++.|..+++||.+..... ..+..+. ...-.|++++++.++..++++. .|-.|+++.-.- |
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY---nDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY---NDEDIYLFNKSMGDGSE 372 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee---cccceEEeccccccCCC
Confidence 8999999999999998754322 1112221 2344589999998888899987 588999995432 2
Q ss_pred --------ceEEE-eecC---CcEeEEE-eCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcC
Q 019847 225 --------TCIHG-IDAK---AQICGLE-WNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSP 291 (335)
Q Consensus 225 --------~~~~~-~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 291 (335)
..+.. ++++ ..|..+. |-|...++++| ++-|.|.||+-.+++.+..+.+-..-|+||.=+|
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSG------SDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP 446 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSG------SDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP 446 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEec------CccceEEEEecchhHHHHHhhcccceEeccCCCC
Confidence 11112 3332 2355555 45778888887 7899999999999999999988777899999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCC
Q 019847 292 DGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 292 ~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
--..||+++-|..|+||-....+.
T Consensus 447 ~~PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 447 HLPVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred CCchhhccCCccceeeecCCcccc
Confidence 999999999999999998755443
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-18 Score=137.83 Aligned_cols=211 Identities=18% Similarity=0.271 Sum_probs=154.2
Q ss_pred CCCcccccceeeeecCC-c-eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC--CCCEEEEEECCCcEEEEe
Q 019847 11 PYLMEDYYSKVIDWGRN-N-VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH--DAKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 11 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~ 86 (335)
.-..+...++|++|+.+ . +++++.|-.+.|||.-..+....+. .+|...|.++.|-| +.+.+++|..|..|+++|
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-cccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 34557788999999985 3 4445567899999998777665554 58999999999999 567889999999999999
Q ss_pred CCC----------ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE---------eecCCCCE
Q 019847 87 AET----------SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC---------IKAHSGEV 147 (335)
Q Consensus 87 ~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---------~~~~~~~i 147 (335)
+.. .+....+..|...|..++-.|..++.+.++++||+|+-+|++........ +....-..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 974 23445567788999999999966699999999999999999864322111 11122356
Q ss_pred EEEEeec-CCCEEEEEeCCCeEEEEEccCCCcc-----c----------ceeec-cCCC--------C---CeeEEEecC
Q 019847 148 CGLKWSN-EGNLLASGGDDNVVRIWERSKMSSS-----K----------SLHRF-TDHC--------G---GVKALAWSP 199 (335)
Q Consensus 148 ~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~-----~----------~~~~~-~~~~--------~---~v~~~~~~~ 199 (335)
.++..+| +..+||+|+.|-..++||.+..... . .+..+ .+|- . .++-+.|+|
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnp 283 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNP 283 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECC
Confidence 7899999 5679999999999999995432100 0 01111 1111 1 145678999
Q ss_pred CCCcEEEEecCCCCCeEEEEECCCCc
Q 019847 200 HQVNVLATGGGREDGCIKIWNVQKGT 225 (335)
Q Consensus 200 ~~~~~~~~~~g~~d~~i~i~d~~~~~ 225 (335)
+|..++++-+ ...|+++|+..++
T Consensus 284 NGtElLvs~~---gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 284 NGTELLVSWG---GEHVYLFDVNEDK 306 (758)
T ss_pred CCcEEEEeeC---CeEEEEEeecCCC
Confidence 9998988874 5679999986554
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-15 Score=126.29 Aligned_cols=284 Identities=12% Similarity=0.201 Sum_probs=190.6
Q ss_pred eEEEecC----CeEEEEEe--cCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC----CCcEEEEeCCCc--e--eEe
Q 019847 29 VLAVALG----PVLFLWKW--ENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM----DSKLQLWDAETS--K--LVR 94 (335)
Q Consensus 29 ~~~~~~~----~~i~vw~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~--~--~~~ 94 (335)
+++++.. +.|++|++ +++++....... .......++++|++++|.+... +|.|..|++... + .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4555544 78999998 556655444332 3445678999999999999876 578999988753 3 333
Q ss_pred eecccccceeEeeecCCCCCEEEEee-CCCcEEEEecccCCeeeEEe--e-----------cCCCCEEEEEeecCCCEEE
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGS-KDKSIINHDVRVSNNVTSCI--K-----------AHSGEVCGLKWSNEGNLLA 160 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~--~-----------~~~~~i~~~~~~~~~~~l~ 160 (335)
...........++.+| ++++|+++. .+|.+.++++.....+.... . .......++.++|++++++
T Consensus 81 ~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred eeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 3433445667899999 777777776 58999999998755433321 1 1235578999999999888
Q ss_pred EEeC-CCeEEEEEccCCCc-ccceeec-cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC--CCce--EEEeec-
Q 019847 161 SGGD-DNVVRIWERSKMSS-SKSLHRF-TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ--KGTC--IHGIDA- 232 (335)
Q Consensus 161 ~~~~-dg~i~iwd~~~~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~--~~~~--~~~~~~- 232 (335)
+... ...|.+|++..... ......+ .......+.+.|+|++++++++.- .++.|.++++. ++.. +..+..
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e--~s~~v~v~~~~~~~g~~~~~~~~~~~ 237 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE--LSNTVSVFDYDPSDGSLTEIQTISTL 237 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC--CCCcEEEEeecccCCceeEEEEeeec
Confidence 8653 34799999876431 1111222 234456789999999998888876 89999999988 4432 222221
Q ss_pred ------CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC--Cc--eeecccCCCCceeEeEEcCCCCEEEEEe-C
Q 019847 233 ------KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN--MT--KVGELQSSNSRILDLSQSPDGLTVATAG-A 301 (335)
Q Consensus 233 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~--~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~ 301 (335)
......+.++|+|++++++. ...+.|.+|++.. ++ .+..+.......+.++++|+|++|+++. .
T Consensus 238 ~~~~~~~~~~~~i~ispdg~~lyvsn-----r~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 238 PEGFTGENAPAEIAISPDGRFLYVSN-----RGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp ETTSCSSSSEEEEEE-TTSSEEEEEE-----CTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred cccccccCCceeEEEecCCCEEEEEe-----ccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 12578899999999998764 5688999999842 33 3333433344578999999999999887 5
Q ss_pred CCcEEEEecCCCCCCCCccc
Q 019847 302 DETIRFWEAFGPSGDEDSVS 321 (335)
Q Consensus 302 dg~v~iw~~~~~~~~~~~~~ 321 (335)
++.|.+|+++..........
T Consensus 313 s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 313 SNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEEEeCCCCcEEEec
Confidence 67899999876555444443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=136.75 Aligned_cols=199 Identities=17% Similarity=0.188 Sum_probs=153.0
Q ss_pred eEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCccccee
Q 019847 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLH 183 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 183 (335)
..++|++ ++..+++++.||.+|+|+.+.... ......|.+.|.++.|+||+++|++-+.| ..+||+.+++.......
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t-~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLT-ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchh-hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 6789998 999999999999999999775554 33356799999999999999999999999 89999998863322222
Q ss_pred eccCCCCCeeEEEecCCC---CcEEEEecCCCCCeEEEEECCCCce------EEEeecCCcEeEEEeCCCCceeeeeeee
Q 019847 184 RFTDHCGGVKALAWSPHQ---VNVLATGGGREDGCIKIWNVQKGTC------IHGIDAKAQICGLEWNRHHKEILSGHGF 254 (335)
Q Consensus 184 ~~~~~~~~v~~~~~~~~~---~~~~~~~~g~~d~~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (335)
. .........+.|+.++ ..++++. -..-+.|+.||+....- .+.+.....+++++.+++|++++.|
T Consensus 225 ~-~~k~~~~~~cRF~~d~~~~~l~laa~-~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG--- 299 (398)
T KOG0771|consen 225 P-FSKDEMFSSCRFSVDNAQETLRLAAS-QFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG--- 299 (398)
T ss_pred C-cccchhhhhceecccCCCceEEEEEe-cCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe---
Confidence 1 2223345667777665 2233322 12456677777643221 2223345689999999999999998
Q ss_pred eeecCCCeEEEEECCCCceeeccc-CCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 255 SASGDGNKLCLWKYPNMTKVGELQ-SSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 255 ~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+.+|.|.|++..+.+.++.++ .|..-|+.+.|+||.+++++.+.|....+..+...
T Consensus 300 ---T~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 300 ---TMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred ---ccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 779999999999988877654 78899999999999999999999999999988764
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-18 Score=137.60 Aligned_cols=259 Identities=15% Similarity=0.286 Sum_probs=180.1
Q ss_pred ceEEEecCCeEEEEEecCCce--eeEEeecCCCCCceEEEEc-----CCCCEEEEEECCCcEEEEeCCCceeEeeec---
Q 019847 28 NVLAVALGPVLFLWKWENGKV--KKLLQVPGEDDYPTSVSWS-----HDAKTLAVGYMDSKLQLWDAETSKLVRNLE--- 97 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--- 97 (335)
..++..-...+++|+...+.. .++-+..-......|-+|+ |.+--++.|-..|.+.+.|....+..+.+.
T Consensus 136 d~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r 215 (636)
T KOG2394|consen 136 DRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEER 215 (636)
T ss_pred CEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhcc
Confidence 455556667899998874321 1111111112334555563 466678889889999999977633222221
Q ss_pred -ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEe--ecCCCEEEEEeCCCeEEEEEcc
Q 019847 98 -GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKW--SNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 98 -~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
-.+..++++.|-|.+...++.+-.+|.+++||... ....+...| .+++..++....-+. .+
T Consensus 216 ~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-----------~~~~t~p~~~~~k~~~~f~i~t~ksk---~~-- 279 (636)
T KOG2394|consen 216 LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-----------VCGATAPSYQALKDGDQFAILTSKSK---KT-- 279 (636)
T ss_pred cccccceEEEEEEeCCCceEEEEEecCceEEeeccc-----------cccCCCCcccccCCCCeeEEeeeecc---cc--
Confidence 13478999999998889999999999999999731 111111122 235555544332111 00
Q ss_pred CCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeee
Q 019847 175 KMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHG 253 (335)
Q Consensus 175 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 253 (335)
..++..+.--.+.|...+|+|||++|++++ .||.+||||..+.+++..++. -+...|++|+|||+++++|
T Consensus 280 ----rNPv~~w~~~~g~in~f~FS~DG~~LA~VS---qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtG-- 350 (636)
T KOG2394|consen 280 ----RNPVARWHIGEGSINEFAFSPDGKYLATVS---QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTG-- 350 (636)
T ss_pred ----CCccceeEeccccccceeEcCCCceEEEEe---cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEec--
Confidence 122333333456899999999997666655 899999999998877665544 4578999999999999998
Q ss_pred eeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCC-----------------------------------C-----
Q 019847 254 FSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPD-----------------------------------G----- 293 (335)
Q Consensus 254 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-----------------------------------~----- 293 (335)
++|.-|.||.+...+.+..-++|.++|..++|.|- +
T Consensus 351 ----GEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~ 426 (636)
T KOG2394|consen 351 ----GEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSS 426 (636)
T ss_pred ----CCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccc
Confidence 89999999999999999999999999999999830 1
Q ss_pred --------CEEEEEeCCCcEEEEecCCCCC
Q 019847 294 --------LTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 294 --------~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
-.+.+.+.|-.+.+||+.....
T Consensus 427 ~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 427 FNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred cccccceEEEeecccccceEEEEecchhhc
Confidence 1467788999999999986543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-17 Score=143.78 Aligned_cols=280 Identities=14% Similarity=0.167 Sum_probs=186.8
Q ss_pred eeeecC---CceEEEecCCeEEEEEecC-----CceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc--
Q 019847 21 VIDWGR---NNVLAVALGPVLFLWKWEN-----GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-- 90 (335)
Q Consensus 21 ~~~~~~---~~~~~~~~~~~i~vw~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-- 90 (335)
.++.++ ..+++++.||+|++|+... +......++......+.++.+.+.++.+|+++.||.|++.+++..
T Consensus 1053 k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~ 1132 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV 1132 (1431)
T ss_pred ceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc
Confidence 444444 3577788999999999864 223334444445778999999999999999999999999998752
Q ss_pred -----eeEeeeccc--ccceeEeeecCCCCC-EEEEeeCCCcEEEEecccCCeeeE-EeecCCCCEEEEEeecCCCEEEE
Q 019847 91 -----KLVRNLEGH--HRRVATSSWNHWNGH-ILTSGSKDKSIINHDVRVSNNVTS-CIKAHSGEVCGLKWSNEGNLLAS 161 (335)
Q Consensus 91 -----~~~~~~~~~--~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~ 161 (335)
...+....+ ..-+..-+|...... .++.+...+.|..||++....... ......+.|++++.+|.+++++.
T Consensus 1133 ~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wlvi 1212 (1431)
T KOG1240|consen 1133 SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVI 1212 (1431)
T ss_pred ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEE
Confidence 111112211 223344445443444 788889999999999986543221 12335678999999999999999
Q ss_pred EeCCCeEEEEEccCCCcccceee-ccCCCCCeeEEEecCCCC--cEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeE
Q 019847 162 GGDDNVVRIWERSKMSSSKSLHR-FTDHCGGVKALAWSPHQV--NVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICG 238 (335)
Q Consensus 162 ~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 238 (335)
|+..|.+.+||+|-... +.. ..++..+++.+..+|-.+ ...++++.+..+.|.+|++.+|.+...+-.......
T Consensus 1213 Gts~G~l~lWDLRF~~~---i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ 1289 (1431)
T KOG1240|consen 1213 GTSRGQLVLWDLRFRVP---ILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPI 1289 (1431)
T ss_pred ecCCceEEEEEeecCce---eecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcc
Confidence 99999999999985322 222 223457788887776544 444444322678999999999977666643311111
Q ss_pred --------------------EEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee------------------------
Q 019847 239 --------------------LEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV------------------------ 274 (335)
Q Consensus 239 --------------------~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~------------------------ 274 (335)
..+...+..++ +++.|..|+.||....+..
T Consensus 1290 ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~l------tggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~ 1363 (1431)
T KOG1240|consen 1290 LSYALPSNDARKPDSLAGISCGVCEKNGFLL------TGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIP 1363 (1431)
T ss_pred hhhhcccccCCCCCcccceeeecccCCceee------ecCCccceeeccCCCcccccccccCccccccccchhccccccC
Confidence 11222222333 4488999999997532211
Q ss_pred -----ec---------------------------ccCCCCceeEeEEcCC-CCEEEEEeCCCcEEEEe
Q 019847 275 -----GE---------------------------LQSSNSRILDLSQSPD-GLTVATAGADETIRFWE 309 (335)
Q Consensus 275 -----~~---------------------------~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iw~ 309 (335)
.. -..|..+|+++++... ..+|++++.||.|++|.
T Consensus 1364 ~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1364 GSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00 0136667888886654 46899999999999994
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-19 Score=141.85 Aligned_cols=265 Identities=19% Similarity=0.261 Sum_probs=206.9
Q ss_pred eeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecc
Q 019847 21 VIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEG 98 (335)
Q Consensus 21 ~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 98 (335)
.++++.+ .++.++..|.|..+|+.++++...+.. ...|.++.|-.+.+++|++ ....++|||- .|..+..++.
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v---~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHClk~ 208 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV---METVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHCLKR 208 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeeeeeeh---hhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEeehhh
Confidence 3566553 688888999999999999987665544 4678999999999888888 4668999994 5777777875
Q ss_pred cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCc
Q 019847 99 HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSS 178 (335)
Q Consensus 99 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 178 (335)
| ..|..+.|.| ...+|++++..|.++.-|+.+++. +..+....+.+..++-+|-+..+-+|...|+|.+|... .
T Consensus 209 ~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~Gkl-Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~---s 282 (545)
T KOG1272|consen 209 H-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKL-VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN---S 282 (545)
T ss_pred c-Cchhhhcccc-hhheeeecccCCceEEEeechhhh-hHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC---C
Confidence 4 6799999999 889999999999999999997765 44455667888889999988899999999999999954 4
Q ss_pred ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeec
Q 019847 179 SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASG 258 (335)
Q Consensus 179 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (335)
..++..+..|.++|.++++.++|.+++++| .|..++|||+++...+.++..+.+...+++|..|...+ +
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG---~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~--------~ 351 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGRYMATTG---LDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLAL--------S 351 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCcEEeecc---cccceeEeeeccccccceeecCCCccccccccccceee--------e
Confidence 566777788999999999999997666666 79999999999998888887777888899988775444 3
Q ss_pred CCCeEEEEEC-CCCc--eeecc--cCCCCceeEeEEcCCCCEEEEEeCCCcEEE
Q 019847 259 DGNKLCLWKY-PNMT--KVGEL--QSSNSRILDLSQSPDGLTVATAGADETIRF 307 (335)
Q Consensus 259 ~~~~i~i~d~-~~~~--~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 307 (335)
....+.||.- -.+. ....+ ....+.|..+.|.|-...|-.|..-|.-.+
T Consensus 352 ~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 352 YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 4788999952 2211 11111 122347999999997767766655554333
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-18 Score=126.65 Aligned_cols=253 Identities=15% Similarity=0.226 Sum_probs=180.7
Q ss_pred cccccccCCCCcccccceeeeecC-CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCc
Q 019847 3 REARILDAPYLMEDYYSKVIDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSK 81 (335)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (335)
.|...+... ++...++++.|.. ++++++..-|.|.+|++++......+++ .|...|+.+.--|+ ..+.+-+.|+.
T Consensus 3 pPdP~fvLR--p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~-~g~~~it~lq~~p~-d~l~tqgRd~~ 78 (323)
T KOG0322|consen 3 PPDPFFVLR--PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRL-FGRLFITNLQSIPN-DSLDTQGRDPL 78 (323)
T ss_pred CCCCeeEec--cccchheehhhccchhhhcccccceEEEEEeecCccchhhhh-hccceeeceeecCC-cchhhcCCCce
Confidence 344433333 5556678888887 4788888999999999999887665553 36778888888887 46777788999
Q ss_pred EEEEeCCCceeEee-------------------------e----------------------------cccccceeEeee
Q 019847 82 LQLWDAETSKLVRN-------------------------L----------------------------EGHHRRVATSSW 108 (335)
Q Consensus 82 i~iw~~~~~~~~~~-------------------------~----------------------------~~~~~~v~~~~~ 108 (335)
+.+|++.-+..+.. . .+..+.+.+..+
T Consensus 79 L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 79 LILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 99998754211100 0 011234555554
Q ss_pred cCCCC--CEEEEeeCCCcEEEEecccCCeee---------EEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCC
Q 019847 109 NHWNG--HILTSGSKDKSIINHDVRVSNNVT---------SCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMS 177 (335)
Q Consensus 109 ~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 177 (335)
....+ -++++|.++|.+.+||+.++...+ .....|..+|.++.+.+.-..=++|+.+..+..|.++...
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST 238 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence 33222 357788899999999998764322 2344689999999998865556777888889999987542
Q ss_pred cc-cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeee
Q 019847 178 SS-KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFS 255 (335)
Q Consensus 178 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 255 (335)
.. +.-....-.+-.+..+..-||++ ++++++ .|+.||+|+.++.+++..++- ...+.+++|+|+...++++
T Consensus 239 gslq~~~e~~lknpGv~gvrIRpD~K-IlATAG--WD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaa---- 311 (323)
T KOG0322|consen 239 GSLQIRKEITLKNPGVSGVRIRPDGK-ILATAG--WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAA---- 311 (323)
T ss_pred CcccccceEEecCCCccceEEccCCc-EEeecc--cCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhc----
Confidence 11 11111222344588899999995 777776 999999999999999988875 4689999999998888776
Q ss_pred eecCCCeEEEEEC
Q 019847 256 ASGDGNKLCLWKY 268 (335)
Q Consensus 256 ~~~~~~~i~i~d~ 268 (335)
+.|+.|.+|++
T Consensus 312 --skD~rISLWkL 322 (323)
T KOG0322|consen 312 --SKDARISLWKL 322 (323)
T ss_pred --cCCceEEeeec
Confidence 88999999986
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-16 Score=118.43 Aligned_cols=244 Identities=14% Similarity=0.152 Sum_probs=165.4
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccc--cceeEeeecCCCCCEEEEeeCC------CcEEEEecc
Q 019847 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH--RRVATSSWNHWNGHILTSGSKD------KSIINHDVR 131 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~d------g~i~~~d~~ 131 (335)
...+++|+.|..-+++|..+| .+||+.+.-+.....+.+. -.+..+-|- .+-+.++|+.+ +.+.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 345699999999999998776 9999987643322222222 334444452 22233344433 479999944
Q ss_pred cCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCC
Q 019847 132 VSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGR 211 (335)
Q Consensus 132 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 211 (335)
...+ ...+ ....+|.++.+.++ .+++.- ++.|++|...+. .+.++.+.....|=--++..|....-+.+.-|.
T Consensus 84 k~~~-i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n--~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 84 KERC-IIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDN--PKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred cCcE-EEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCC--hhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 3333 3322 47889999999876 555554 678999997632 333443332222211333444433333333356
Q ss_pred CCCeEEEEECCCCce---EEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC--CCceeE
Q 019847 212 EDGCIKIWNVQKGTC---IHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS--NSRILD 286 (335)
Q Consensus 212 ~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~ 286 (335)
.-|.|++-|+...+. .....+...|.+++.+.+|..++++. ...--|+|||..+++++.+++.. ...|.+
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS-----tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ 231 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS-----TKGTLIRIFDTEDGTLLQELRRGVDRADIYC 231 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec-----cCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence 789999999987655 34445677999999999999999873 34445899999999999998743 346999
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 287 LSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 287 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
++|||+..+|+++|+-|+++|+.+........
T Consensus 232 iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~ 263 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSDKGTLHIFSLRDTENTED 263 (346)
T ss_pred EEeCCCccEEEEEcCCCeEEEEEeecCCCCcc
Confidence 99999999999999999999999998654443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-17 Score=144.07 Aligned_cols=233 Identities=19% Similarity=0.318 Sum_probs=170.5
Q ss_pred ceEEEecCCeEEEEEecCC---ceeeEE---eecC----CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec
Q 019847 28 NVLAVALGPVLFLWKWENG---KVKKLL---QVPG----EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~---~~~~~~---~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 97 (335)
-+++++.||.|+||+--.. +.+-+. .+.+ ..+.=.-++|..+..+|++++.-..|+|||.+....+..+.
T Consensus 1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP 1204 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP 1204 (1387)
T ss_pred heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc
Confidence 5788899999999984322 111111 1111 11122446787766677777768899999999888877765
Q ss_pred c-cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe--eeEEeecCCCC--EEEEEeecCCC-EEEEEeCCCeEEEE
Q 019847 98 G-HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN--VTSCIKAHSGE--VCGLKWSNEGN-LLASGGDDNVVRIW 171 (335)
Q Consensus 98 ~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~--i~~~~~~~~~~-~l~~~~~dg~i~iw 171 (335)
. ....++++.-+...++.+++|..||.|++||.+.... .+...+.|... |..+.+.+.|- .|++|+.||.|++|
T Consensus 1205 ~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1205 YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLL 1284 (1387)
T ss_pred cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEE
Confidence 3 4567888877665789999999999999999986554 56777888887 99999998654 59999999999999
Q ss_pred EccCCCcccceeeccCCC--C-CeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec--------CCcEeEEE
Q 019847 172 ERSKMSSSKSLHRFTDHC--G-GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA--------KAQICGLE 240 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~--~-~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~ 240 (335)
|++... .........|. + ..+++..+++.+ ++++|+ . +.|+||++. |+.+..++. ...+.+++
T Consensus 1285 DlR~~~-~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs--~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~ 1358 (1387)
T KOG1517|consen 1285 DLRMSS-KETFLTIVAHWEYGSALTALTVHEHAP-IIASGS--A-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLA 1358 (1387)
T ss_pred ecccCc-ccccceeeeccccCccceeeeeccCCC-eeeecC--c-ceEEEEecC-hhhhcccccCcccccCcCCCcceee
Confidence 999752 23333333332 3 489999999885 888875 4 999999986 444443332 23579999
Q ss_pred eCCCCceeeeeeeeeeecCCCeEEEEECCCCc
Q 019847 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 272 (335)
|+|....+++| ..|..|.||......
T Consensus 1359 FHP~~~llAaG------~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1359 FHPHRLLLAAG------SADSTVSIYSCEKPR 1384 (1387)
T ss_pred ecchhHhhhhc------cCCceEEEeecCCcC
Confidence 99999999888 679999999876543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-17 Score=123.69 Aligned_cols=163 Identities=18% Similarity=0.310 Sum_probs=119.1
Q ss_pred EEEEeecCCCEEEEEeC----------CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEE
Q 019847 148 CGLKWSNEGNLLASGGD----------DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIK 217 (335)
Q Consensus 148 ~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (335)
..+.|+|+|++|+.-.. -|...+|.++..........+. ..++|.+++|+|++..++++. |..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~-g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIY-GSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEE-ccCCcccE
Confidence 45889999987776543 1345666665433222222222 345799999999998876665 44678999
Q ss_pred EEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEE
Q 019847 218 IWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVA 297 (335)
Q Consensus 218 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 297 (335)
+||++ ++.+..+. ...+..+.|+|+|++++.+.. +...|.+.+||.++.+.+.+.... .++.++|+|||++|+
T Consensus 87 lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~---~n~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGF---GNLNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLA 159 (194)
T ss_pred EEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEc---cCCCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEE
Confidence 99997 66666665 456788999999999988631 234588999999998888776533 478999999999999
Q ss_pred EEeC------CCcEEEEecCCCCCCCCc
Q 019847 298 TAGA------DETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 298 ~~~~------dg~v~iw~~~~~~~~~~~ 319 (335)
+++. |+.++||++.+.......
T Consensus 160 ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred EEEeccceeccccEEEEEecCeEeEecc
Confidence 9874 788999999876544433
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-16 Score=136.27 Aligned_cols=240 Identities=16% Similarity=0.135 Sum_probs=159.9
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC---CcEEEEeCCCceeEeeecccccceeEeeecCCC
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD---SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWN 112 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 112 (335)
..|.+||.+...... +..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+......|+| +
T Consensus 184 ~~l~i~D~~g~~~~~---lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~Sp-D 258 (433)
T PRK04922 184 YALQVADSDGYNPQT---ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSP-D 258 (433)
T ss_pred EEEEEECCCCCCceE---eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECC-C
Confidence 368899987655433 33466788999999999999987743 469999998876533 333445556789999 7
Q ss_pred CCEE-EEeeCCC--cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC-CCe--EEEEEccCCCcccceeecc
Q 019847 113 GHIL-TSGSKDK--SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD-DNV--VRIWERSKMSSSKSLHRFT 186 (335)
Q Consensus 113 ~~~l-~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~ 186 (335)
++.+ ++.+.+| .|++||+.++.. ..+..+.......+|+||++.|+..+. +|. |+++|+..+. ...+.
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~--~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~----~~~lt 332 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQL--TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS----AERLT 332 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCe--EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----eEEee
Confidence 7655 4556665 589999876542 334455555677899999998887764 444 6666655432 12222
Q ss_pred CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEE
Q 019847 187 DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLW 266 (335)
Q Consensus 187 ~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 266 (335)
.+.......+|+|+|+.++.+........|.+||+.+++.. .+..........|+|+|+.++.... ....+.+.++
T Consensus 333 ~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~---~~g~~~L~~~ 408 (433)
T PRK04922 333 FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATR---EGGRGVLAAV 408 (433)
T ss_pred cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEe---cCCceEEEEE
Confidence 22234457899999988877653111236999999887755 4443334556799999998876521 1234568888
Q ss_pred ECCCCceeecccCCCCceeEeEEcC
Q 019847 267 KYPNMTKVGELQSSNSRILDLSQSP 291 (335)
Q Consensus 267 d~~~~~~~~~~~~~~~~i~~~~~~~ 291 (335)
+... .....+..+.+.+...+|+|
T Consensus 409 ~~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 409 STDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ECCC-CceEEcccCCCCCCCCccCC
Confidence 8754 44555555666777888876
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.8e-17 Score=137.14 Aligned_cols=236 Identities=18% Similarity=0.169 Sum_probs=154.0
Q ss_pred CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCC---CcEEEEecccCCeeeEEeecCCCCEEEEEeecCC
Q 019847 80 SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD---KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156 (335)
Q Consensus 80 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 156 (335)
..|.+||... ...+.+..+...+.+.+|+| +++.|+..+.+ ..|++||+.++.. ..+..+.+...+.+|+|+|
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCC
Confidence 3689999864 44455666778899999999 88888877643 4699999976553 2233445555678999999
Q ss_pred CEEEE-EeCCC--eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC--eEEEEECCCCceEEEee
Q 019847 157 NLLAS-GGDDN--VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG--CIKIWNVQKGTCIHGID 231 (335)
Q Consensus 157 ~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~ 231 (335)
+.|+. .+.+| .|++||+..+. ...+..+.......+|+|+++.++.+.. .++ .|+++|+.+++......
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~----~~~lt~~~~~~~~~~~spDG~~l~f~sd--~~g~~~iy~~dl~~g~~~~lt~ 333 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQ----LTRLTNHFGIDTEPTWAPDGKSIYFTSD--RGGRPQIYRVAASGGSAERLTF 333 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCC----eEECccCCCCccceEECCCCCEEEEEEC--CCCCceEEEEECCCCCeEEeec
Confidence 97764 45555 59999987643 3334445455567899999988877753 444 47777887766443322
Q ss_pred cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC---CcEEEE
Q 019847 232 AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD---ETIRFW 308 (335)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~v~iw 308 (335)
........+|+|+|+.++.... ......|.+||+.+++.. .+. +........|+|||++|+..+.+ +.+.++
T Consensus 334 ~g~~~~~~~~SpDG~~Ia~~~~---~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 334 QGNYNARASVSPDGKKIAMVHG---SGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred CCCCccCEEECCCCCEEEEEEC---CCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 3334557899999999876521 122347999999887765 332 22234567999999988776653 357777
Q ss_pred ecCCCCCCCCcccccccccccee
Q 019847 309 EAFGPSGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 309 ~~~~~~~~~~~~~~~~~i~~~~~ 331 (335)
++.+.. ......+...+....+
T Consensus 409 ~~~g~~-~~~l~~~~g~~~~p~w 430 (433)
T PRK04922 409 STDGRV-RQRLVSADGEVREPAW 430 (433)
T ss_pred ECCCCc-eEEcccCCCCCCCCcc
Confidence 775432 2223233344444443
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-19 Score=151.38 Aligned_cols=235 Identities=17% Similarity=0.296 Sum_probs=175.5
Q ss_pred ceeeeec--CCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 19 SKVIDWG--RNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 19 ~~~~~~~--~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
+.|..++ +.++++++.|..++||..+++.+ .....||...|+.++.+.+..++++++.|..|++|.+.++.++..+
T Consensus 193 Vyca~fDrtg~~Iitgsdd~lvKiwS~et~~~--lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvL 270 (1113)
T KOG0644|consen 193 VYCAIFDRTGRYIITGSDDRLVKIWSMETARC--LASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVL 270 (1113)
T ss_pred eeeeeeccccceEeecCccceeeeeeccchhh--hccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHH
Confidence 3344444 45788888999999999888876 4567799999999999999999999999999999999999999999
Q ss_pred cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE---ee-cCCCCEEE-----------------------
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC---IK-AHSGEVCG----------------------- 149 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~-~~~~~i~~----------------------- 149 (335)
.+|++.|++++|+| - .+.+.||++++||.+-... ... .. .....+.+
T Consensus 271 rghtgavtaiafsP-~----~sss~dgt~~~wd~r~~~~-~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e 344 (1113)
T KOG0644|consen 271 RGHTGAVTAIAFSP-R----ASSSDDGTCRIWDARLEPR-IYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHE 344 (1113)
T ss_pred hccccceeeeccCc-c----ccCCCCCceEecccccccc-ccCCCCCCcccccceeeeeccccccccccccCCcccccch
Confidence 99999999999999 2 2778999999999871110 000 00 00111112
Q ss_pred ---EEeecCCCEEEE-----------EeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe
Q 019847 150 ---LKWSNEGNLLAS-----------GGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215 (335)
Q Consensus 150 ---~~~~~~~~~l~~-----------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 215 (335)
++|....-.+++ +-.+-.+.+|++.+ +...+...+|..++..+.++|.+..+..+++ .||.
T Consensus 345 ~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~---g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag--~dgs 419 (1113)
T KOG0644|consen 345 FEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT---GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAG--YDGS 419 (1113)
T ss_pred hhHhhhhccceEEEeccccccccceeeeeeeEeeeeeccc---chhhhhhcccccceeeeeecCCCcHhhhhcc--CCCc
Confidence 222222222222 22344566777555 3446677789999999999999999988887 9999
Q ss_pred EEEEECCCCceEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc
Q 019847 216 IKIWNVQKGTCIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 216 i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 272 (335)
..|||+-.|.+++.+. .+..+..-+|+++|..++.. .+-|.++|.....++
T Consensus 420 t~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ls------d~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 420 TIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALS------DDHGQLYILGTGQSK 471 (1113)
T ss_pred eEeeecccCCcceeeecccceeeccccCCCCceEecC------CCCCceEEeccCCCc
Confidence 9999999998877664 46788899999999988765 456777777654443
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.4e-17 Score=125.65 Aligned_cols=240 Identities=18% Similarity=0.264 Sum_probs=166.3
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec-ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE-GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT 137 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 137 (335)
..+..++|++.-..+|++..|-.|++||-.. +....++ .....|++++|-|.....|+.|+..| |.+|.........
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 4578899999777788999999999999776 4444444 34578999999998888888887654 8889764322111
Q ss_pred -------------EEeecCCCCEEEEEeecCCCEEEEEeC-CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCc
Q 019847 138 -------------SCIKAHSGEVCGLKWSNEGNLLASGGD-DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203 (335)
Q Consensus 138 -------------~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 203 (335)
....+| .+|+++.|++||..+++++. |..|.|||..++.. .++. ....+.+.-+.|+||+..
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~-~pL~--~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK-IPLI--PKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-cccc--ccCCCceeeEEEcCCCCE
Confidence 111233 68999999999999999875 56899999887543 2232 224567889999999999
Q ss_pred EEEEecCCCCCeEEEEECC-CCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC-----------
Q 019847 204 VLATGGGREDGCIKIWNVQ-KGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM----------- 271 (335)
Q Consensus 204 ~~~~~~g~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~----------- 271 (335)
++++. -|+..++|+.. +.....-.-..+.+...+|+|.|..++... .+.-++|.+.-.
T Consensus 253 lfaAt---~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~-------sgsp~lysl~f~~~~~~~~~~~~ 322 (445)
T KOG2139|consen 253 LFAAT---CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC-------SGSPRLYSLTFDGEDSVFLRPQS 322 (445)
T ss_pred EEEec---ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE-------cCCceEEEEeecCCCccccCccc
Confidence 88877 59999999543 344444444566899999999999987653 233333332110
Q ss_pred ----ceeecc-----cC----CCCceeEeEEcCCCCEEEEEeCCC--------cEEEEecCCCC
Q 019847 272 ----TKVGEL-----QS----SNSRILDLSQSPDGLTVATAGADE--------TIRFWEAFGPS 314 (335)
Q Consensus 272 ----~~~~~~-----~~----~~~~i~~~~~~~~~~~l~~~~~dg--------~v~iw~~~~~~ 314 (335)
.++..+ .. -.+++.+++|.|.|.+||+.-+.+ .|.+||.....
T Consensus 323 ~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 323 IKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred ceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 011111 11 145788999999999999875433 35667665543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-15 Score=130.26 Aligned_cols=236 Identities=12% Similarity=0.086 Sum_probs=155.5
Q ss_pred cEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEee---CCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCC
Q 019847 81 KLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS---KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (335)
.|.++|...... +.+..+...+...+|+| +++.|+..+ .+..+.+|++.+++. ..+....+.+...+|+|||+
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence 689999875543 34445667899999999 888877654 235799999976542 22223344456789999999
Q ss_pred EEEEE-eCCC--eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC--eEEEEECCCCceEEEeec
Q 019847 158 LLASG-GDDN--VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG--CIKIWNVQKGTCIHGIDA 232 (335)
Q Consensus 158 ~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~~ 232 (335)
.|+.. +.+| .|++||+.+.. ...+..+...+....|+|+++.++.+.. .++ .|+++|+.+++.......
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~----~~~lt~~~~~~~~~~wSPDG~~I~f~s~--~~g~~~Iy~~d~~~g~~~~lt~~ 329 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQNLAYTSD--QAGRPQVYKVNINGGAPQRITWE 329 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCC----EEEccCCCCCcCceEECCCCCEEEEEeC--CCCCceEEEEECCCCCeEEeecC
Confidence 88865 3344 58889987542 2333334456788999999988877653 344 455567776655433233
Q ss_pred CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCc---EEEEe
Q 019847 233 KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADET---IRFWE 309 (335)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~---v~iw~ 309 (335)
........|+|+|+.++.... ......|.+||+.+++.. .+... .......|+|||++|+.++.++. +.+++
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~---~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSS---NGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred CCCccCEEECCCCCEEEEEEc---cCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 344567899999999876421 122356889999887643 23221 12346789999999999988765 66777
Q ss_pred cCCCCCCCCccccccccccceec
Q 019847 310 AFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 310 ~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
+.+... .....|...+....++
T Consensus 405 ~~G~~~-~~l~~~~~~~~~p~Ws 426 (429)
T PRK03629 405 TDGRFK-ARLPATDGQVKFPAWS 426 (429)
T ss_pred CCCCCe-EECccCCCCcCCcccC
Confidence 755433 3344566666666554
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-16 Score=133.81 Aligned_cols=245 Identities=13% Similarity=0.094 Sum_probs=157.9
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC---CcEEEEeCCCceeEeeecccccceeEeeecCCC
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD---SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWN 112 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 112 (335)
..|.++|.+...... +..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+......|+| +
T Consensus 176 ~~L~~~D~dG~~~~~---l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SP-D 250 (427)
T PRK02889 176 YQLQISDADGQNAQS---ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSP-D 250 (427)
T ss_pred cEEEEECCCCCCceE---eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-C
Confidence 367777765443322 33566788999999999999887643 359999999887543 333445667899999 7
Q ss_pred CCEEE-EeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC-CCeEEEEEccCCCcccceeeccCCCC
Q 019847 113 GHILT-SGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD-DNVVRIWERSKMSSSKSLHRFTDHCG 190 (335)
Q Consensus 113 ~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~ 190 (335)
++.|+ +.+.+|...+|.++........+..+........|+|||+.|+..+. +|...+|.+...... ...+.....
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~--~~~lt~~g~ 328 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA--AQRVTFTGS 328 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc--eEEEecCCC
Confidence 77665 56778877777654332223444445555677899999998887664 466667765422111 111111223
Q ss_pred CeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC
Q 019847 191 GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 191 ~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
......|+|+|+.++.+.....+..|.+||+.+++... +..........|+|+|+.++.... ......+.+.+. +
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~~---~~g~~~l~~~~~-~ 403 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYATQ---QGGRSVLAAVSS-D 403 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEEe---cCCCEEEEEEEC-C
Confidence 34467899999887776531012379999998887543 333334467899999999887532 011234666676 4
Q ss_pred CceeecccCCCCceeEeEEcCC
Q 019847 271 MTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
+.....+..+.+.+...+|+|-
T Consensus 404 g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 404 GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCceEEeecCCCCCCCCccCCC
Confidence 5555566666677888888874
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.3e-16 Score=132.85 Aligned_cols=241 Identities=15% Similarity=0.163 Sum_probs=161.5
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC---CCcEEEEeCCCceeEeeecccccceeEeeecCCC
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM---DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWN 112 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 112 (335)
..|.++|.+...... +..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+....|+| +
T Consensus 182 ~~l~~~d~dg~~~~~---lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SP-D 256 (435)
T PRK05137 182 KRLAIMDQDGANVRY---LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSP-D 256 (435)
T ss_pred eEEEEECCCCCCcEE---EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECC-C
Confidence 378899886665432 3357778999999999999988763 468999999887653 4445666778899999 7
Q ss_pred CCEE-EEeeCCCc--EEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC-CC--eEEEEEccCCCcccceeecc
Q 019847 113 GHIL-TSGSKDKS--IINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD-DN--VVRIWERSKMSSSKSLHRFT 186 (335)
Q Consensus 113 ~~~l-~~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~ 186 (335)
++.| ++.+.++. |++||+.++. ...+..+........|+|||+.|+..+. +| .|+++|+.... .+.+.
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----~~~lt 330 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----PRRIS 330 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----eEEee
Confidence 7765 46666665 7777877544 3335556666778999999999887764 33 67888866432 22222
Q ss_pred CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCC--CeEE
Q 019847 187 DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDG--NKLC 264 (335)
Q Consensus 187 ~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~ 264 (335)
.+...+....|+|+|+.++.+.....+..|.+||+..+.. ..+.....+....|+|+|+.++.... ..+.. ..+.
T Consensus 331 ~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~--~~~~~~~~~L~ 407 (435)
T PRK05137 331 FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQ--TPGSGGAPKLY 407 (435)
T ss_pred cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEc--cCCCCCcceEE
Confidence 2345566788999998887765311234788899865543 44444445678899999998875421 00111 4688
Q ss_pred EEECCCCceeecccCCCCceeEeEEcCC
Q 019847 265 LWKYPNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 265 i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
++|+..+.. ..+. ..+.+...+|+|-
T Consensus 408 ~~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 408 TVDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred EEECCCCce-EEcc-CCCCccCcccCCC
Confidence 888876554 3443 2334667777763
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-18 Score=135.84 Aligned_cols=262 Identities=17% Similarity=0.240 Sum_probs=199.8
Q ss_pred EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec-ccccceeEeeecCCC-CCEEEEeeCCCcEEEEe
Q 019847 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE-GHHRRVATSSWNHWN-GHILTSGSKDKSIINHD 129 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~~d 129 (335)
.++..|.+.|..+.|+..|..|++|+.|..|.+||...++.+..+. +|...|..-.|.|.. ..-+++++.||.+++=.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 3567899999999999999999999999999999999887766654 688888888888753 45789999999999988
Q ss_pred cccCCee--eEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCC---CeeEEEecCCCCc
Q 019847 130 VRVSNNV--TSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCG---GVKALAWSPHQVN 203 (335)
Q Consensus 130 ~~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~ 203 (335)
+...+.+ ...+..|.++|..++.-| ....|.+++.|+.+.-+|++.......+..-..+.. ....++..|...+
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence 7654433 345667999999999998 456789999999999999987655444444344444 5678999999999
Q ss_pred EEEEecCCCCCeEEEEECCCCce------EEEe-------ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC
Q 019847 204 VLATGGGREDGCIKIWNVQKGTC------IHGI-------DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 204 ~~~~~~g~~d~~i~i~d~~~~~~------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
.+++++ .|..+++||.+.-.. +..+ ..+..|++++|+.++..++++ -.|-.|+++.-.-
T Consensus 296 ~faVgG--~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS------YnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 296 EFAVGG--SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS------YNDEDIYLFNKSM 367 (559)
T ss_pred ccccCC--hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee------ecccceEEecccc
Confidence 999987 999999999875322 1222 123469999999887777666 3588899884321
Q ss_pred --C----------ceeec-ccCCCC--ceeEeE-EcCCCCEEEEEeCCCcEEEEecCCCCCCCCccc
Q 019847 271 --M----------TKVGE-LQSSNS--RILDLS-QSPDGLTVATAGADETIRFWEAFGPSGDEDSVS 321 (335)
Q Consensus 271 --~----------~~~~~-~~~~~~--~i~~~~-~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 321 (335)
+ ..+.. +++|.. .|..+- |-|...|+++|+.-|.|.||+-.+++...-+.+
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg 434 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG 434 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc
Confidence 2 12223 677765 355554 568889999999999999999888765544433
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=131.13 Aligned_cols=197 Identities=21% Similarity=0.259 Sum_probs=149.5
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEe-
Q 019847 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI- 140 (335)
Q Consensus 62 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~- 140 (335)
.+++|+++|..|++|+.||.+|||+......+.....|...|.++.|+| ++..|++-+.| ..+||+.+++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 6899999999999999999999999888888888888999999999999 99999999999 99999999875433322
Q ss_pred ecCCCCEEEEEeecCC-----CEEEEEeCCCeEEEEEccCCCccc--ceeeccCCCCCeeEEEecCCCCcEEEEecCCCC
Q 019847 141 KAHSGEVCGLKWSNEG-----NLLASGGDDNVVRIWERSKMSSSK--SLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213 (335)
Q Consensus 141 ~~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 213 (335)
.........+.|+.++ ..++....-+.|+.||+....... ...........|.+++.+++|+ +++.|+ .|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-f~AlGT--~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-FLALGT--MD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-EEEEec--cC
Confidence 2334456778888776 333333445667777765322211 1222222345799999999996 666665 89
Q ss_pred CeEEEEECCCCceEEEeec--CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC
Q 019847 214 GCIKIWNVQKGTCIHGIDA--KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269 (335)
Q Consensus 214 ~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 269 (335)
|.|.+++..+.+.++..+. ..-|+.+.|+|+.+++++- +.+....+..+.
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv------Ss~~~~~v~~l~ 354 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASV------SSDNEAAVTKLA 354 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccc------ccCCceeEEEEe
Confidence 9999999999888877763 4579999999999998874 456777666553
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8e-17 Score=125.83 Aligned_cols=222 Identities=13% Similarity=0.174 Sum_probs=173.2
Q ss_pred ccceeeeecCCceEEEecCCeEEEEEecCCc--eeeEEeecCCCCCceEEEEcCCCCEE-EEEECC--CcEEEEeCCCce
Q 019847 17 YYSKVIDWGRNNVLAVALGPVLFLWKWENGK--VKKLLQVPGEDDYPTSVSWSHDAKTL-AVGYMD--SKLQLWDAETSK 91 (335)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d--g~i~iw~~~~~~ 91 (335)
..+..+...++.++++..+|.+.+|..+.+. ..+...+..+ ..+..+.-++...++ |+|+.. ..+.+||+++.+
T Consensus 106 ~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~ 184 (412)
T KOG3881|consen 106 KSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK 184 (412)
T ss_pred ccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccce
Confidence 4455566677889999999999999998543 2223333222 456777777755554 558887 789999999886
Q ss_pred eEeeeccc---------ccceeEeeecCCC--CCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEE
Q 019847 92 LVRNLEGH---------HRRVATSSWNHWN--GHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLA 160 (335)
Q Consensus 92 ~~~~~~~~---------~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 160 (335)
.+.+-+.- .-.++++.|.+ . ...|++++.-+.+++||.+.++.+...+.-.+.+++++...|++++++
T Consensus 185 qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy 263 (412)
T KOG3881|consen 185 QIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIY 263 (412)
T ss_pred eeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEE
Confidence 66554322 23577888988 5 789999999999999999988888888888889999999999999999
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEE
Q 019847 161 SGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLE 240 (335)
Q Consensus 161 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 240 (335)
+|..-|.+..||++.... ....+.+-.+.|+++..+|.++ ++++++ .|+.+||+|+++.+++........++++.
T Consensus 264 ~gn~~g~l~~FD~r~~kl--~g~~~kg~tGsirsih~hp~~~-~las~G--LDRyvRIhD~ktrkll~kvYvKs~lt~il 338 (412)
T KOG3881|consen 264 TGNTKGQLAKFDLRGGKL--LGCGLKGITGSIRSIHCHPTHP-VLASCG--LDRYVRIHDIKTRKLLHKVYVKSRLTFIL 338 (412)
T ss_pred EecccchhheecccCcee--eccccCCccCCcceEEEcCCCc-eEEeec--cceeEEEeecccchhhhhhhhhccccEEE
Confidence 999999999999987533 2233677889999999999986 566665 89999999999988887777777788877
Q ss_pred eCCCC
Q 019847 241 WNRHH 245 (335)
Q Consensus 241 ~~~~~ 245 (335)
+.++-
T Consensus 339 ~~~~~ 343 (412)
T KOG3881|consen 339 LRDDV 343 (412)
T ss_pred ecCCc
Confidence 76554
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-15 Score=123.28 Aligned_cols=291 Identities=14% Similarity=0.199 Sum_probs=202.0
Q ss_pred cccceeeeecC-CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEE-----EC-----CCcEEE
Q 019847 16 DYYSKVIDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVG-----YM-----DSKLQL 84 (335)
Q Consensus 16 ~~~~~~~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~-----dg~i~i 84 (335)
...++..++++ +++++.+.+..++|++..++...-... ...++++.|+|.+.+|.+= .. .-.+.+
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~----~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v 109 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVE----LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLV 109 (566)
T ss_pred CCcceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEec----cceeeeeeecccccccccccccccccCCCCCCCceee
Confidence 34466777887 578888999999999998886322222 1268999999999998762 11 245789
Q ss_pred EeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecC--CCEEEE-
Q 019847 85 WDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNE--GNLLAS- 161 (335)
Q Consensus 85 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~- 161 (335)
|+++++.....+......-++..|++ +. .+++--..+.+++|++...+.+... -|...|+.+.++|. ...+|+
T Consensus 110 ~~vet~~~~s~~q~k~Q~~W~~qfs~-dE-sl~arlv~nev~f~~~~~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvy 185 (566)
T KOG2315|consen 110 YNVETGVQRSQIQKKMQNGWVPQFSI-DE-SLAARLVSNEVQFYDLGSFKTIQHK--LSVSGITMLSLSPGPEPPFVAVY 185 (566)
T ss_pred eeeccceehhheehhhhcCccccccc-ch-hhhhhhhcceEEEEecCCccceeee--eeccceeeEEecCCCCCceEEEE
Confidence 99999666655554433337889986 44 3444455678999999865544433 36788999999985 334444
Q ss_pred ----EeCCCeEEEEEccCCCcccce--eeccCCCCCeeEEEecCCCCcEEEEecCCC---------CCeEEEEECCCCce
Q 019847 162 ----GGDDNVVRIWERSKMSSSKSL--HRFTDHCGGVKALAWSPHQVNVLATGGGRE---------DGCIKIWNVQKGTC 226 (335)
Q Consensus 162 ----~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~---------d~~i~i~d~~~~~~ 226 (335)
.+.-..++||..........+ +.+ ....-..+.|++-|.-|++..+-.- ..++++.+++...+
T Consensus 186 vPe~kGaPa~vri~~~~~~~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~ 263 (566)
T KOG2315|consen 186 VPEKKGAPASVRIYKYPEEGQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV 263 (566)
T ss_pred ccCCCCCCcEEEEeccccccccchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE
Confidence 344568999987632222222 222 1222346889988877766654112 34788888886667
Q ss_pred EEEeecCCcEeEEEeCCCCceeeeeee------------------------------------ee--eecCCCeEEEEEC
Q 019847 227 IHGIDAKAQICGLEWNRHHKEILSGHG------------------------------------FS--ASGDGNKLCLWKY 268 (335)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~--~~~~~~~i~i~d~ 268 (335)
...+...++|.++.|+|++..+++..+ +. .+.-.|.+.|||+
T Consensus 264 ~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 264 SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 777777889999999999987776533 11 1344689999999
Q ss_pred CCCceeecccCCCCceeEeEEcCCCCEEEEEeC------CCcEEEEecCCCCCCCC
Q 019847 269 PNMTKVGELQSSNSRILDLSQSPDGLTVATAGA------DETIRFWEAFGPSGDED 318 (335)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~v~iw~~~~~~~~~~ 318 (335)
.+.+++..+..... +-+.|+|||++++|++. |+.++||+..+......
T Consensus 344 ~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~ 397 (566)
T KOG2315|consen 344 PNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEK 397 (566)
T ss_pred cchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehh
Confidence 99999888877654 55789999999999874 78899999987654443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-16 Score=138.06 Aligned_cols=257 Identities=16% Similarity=0.188 Sum_probs=176.8
Q ss_pred EEeecCCCCCceEEEEcCCC-CEEEEEECCCcEEEEeCCCc-------eeEeeecccccceeEeeecCCCCCEEEEeeCC
Q 019847 51 LLQVPGEDDYPTSVSWSHDA-KTLAVGYMDSKLQLWDAETS-------KLVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 122 (335)
+..+..|...+..++.++.. .++++|+.||+|++||...- +...++......+.++...+ .++.+|.++.|
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVSTKD 1119 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEEcCC
Confidence 45566788888899888755 99999999999999998642 22223333567788888888 89999999999
Q ss_pred CcEEEEecccCCee------eEEeec-CCCCEEE-EEeec-CCC-EEEEEeCCCeEEEEEccCCCcccceeeccCCCCCe
Q 019847 123 KSIINHDVRVSNNV------TSCIKA-HSGEVCG-LKWSN-EGN-LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGV 192 (335)
Q Consensus 123 g~i~~~d~~~~~~~------~~~~~~-~~~~i~~-~~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 192 (335)
|.|++.+++..... .+.... ..+.+.+ -++.. .+. .++.+..-+.|..||++.......++. ....+.|
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~-~~~hG~v 1198 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN-QLRHGLV 1198 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc-Cccccce
Confidence 99999998752211 111111 2233333 33333 233 788888889999999987544333332 2345789
Q ss_pred eEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC--CcEeEEEeCCCCc---eeeeeeeeeeecCCCeEEEEE
Q 019847 193 KALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK--AQICGLEWNRHHK---EILSGHGFSASGDGNKLCLWK 267 (335)
Q Consensus 193 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~i~d 267 (335)
++++.+|.+. .+++|. ..|.+.+||++-+.++..+.++ .++..+..+|-.+ ..+++. .+..+.+.+|+
T Consensus 1199 TSi~idp~~~-WlviGt--s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~----~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1199 TSIVIDPWCN-WLVIGT--SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAG----SSSNNEVSTWN 1271 (1431)
T ss_pred eEEEecCCce-EEEEec--CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEec----ccCCCceeeee
Confidence 9999999986 556654 8999999999999998887654 4677776666544 333221 12688999999
Q ss_pred CCCCceeecccCC-------------------CCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 019847 268 YPNMTKVGELQSS-------------------NSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 268 ~~~~~~~~~~~~~-------------------~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
+.++.....+... .-......+...+.++.+|+.|..|+.||...+...
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred cccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 9887654443221 111122233444568999999999999999987665
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.2e-16 Score=126.70 Aligned_cols=245 Identities=19% Similarity=0.266 Sum_probs=177.2
Q ss_pred CCCCCceEEEEcCCCCEE-EEEECCCcEEEEeCCCceeEee----------------------------eccc-------
Q 019847 56 GEDDYPTSVSWSHDAKTL-AVGYMDSKLQLWDAETSKLVRN----------------------------LEGH------- 99 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~----------------------------~~~~------- 99 (335)
.+...-+.|..+|||+|+ |+|...-.|++||+.+..+... +.-|
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 456777899999999987 5666788999999865422110 0001
Q ss_pred ----ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC
Q 019847 100 ----HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 100 ----~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 175 (335)
...-..++++...-. |+.++....|+-++++.+. .+..+....+.++++..++...+|++|+.+|.|..||.+.
T Consensus 129 ~~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGr-fL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGR-FLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeecCcCCccccccCCCcc-EEEeecCcceEEEEccccc-cccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 112233444442333 4445556678888888554 4555666778999999999999999999999999999886
Q ss_pred CCccccee---eccCCCC-----CeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC--CcEeEEEeCCC-
Q 019847 176 MSSSKSLH---RFTDHCG-----GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK--AQICGLEWNRH- 244 (335)
Q Consensus 176 ~~~~~~~~---~~~~~~~-----~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~- 244 (335)
......+. ....|.+ .|+++.|+.+| .-+++|. .+|.+.|||++..+++..-.+. -+|..+.|.+.
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGt--s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGT--STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCc-eeEEeec--cCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence 44332222 1222333 39999999887 4555544 8999999999999988777664 47889999777
Q ss_pred -CceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 245 -HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 245 -~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+..+++ .+...++|||-.+++....+.... .++.+++-|++-++++|-.++.+..|=+..-
T Consensus 284 ~q~~v~S-------~Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 284 QQNKVVS-------MDKRILKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred CCceEEe-------cchHHhhhcccccCCceeeccccC-CcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 344544 457889999999999988887654 4999999999999999999988887765543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-16 Score=117.48 Aligned_cols=164 Identities=18% Similarity=0.324 Sum_probs=117.2
Q ss_pred eEeeecCCCCCEEEEeeC----------CCcEEEEecccCCeeeEEee-cCCCCEEEEEeecCCCEEEEE--eCCCeEEE
Q 019847 104 ATSSWNHWNGHILTSGSK----------DKSIINHDVRVSNNVTSCIK-AHSGEVCGLKWSNEGNLLASG--GDDNVVRI 170 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~----------dg~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i 170 (335)
..+.|++ +|+.|+.-.. -+...+|.++........+. ...++|.+++|+|+++.||+. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4567888 6665554332 13456666644443333333 245579999999999987665 35679999
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeee
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS 250 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (335)
||++ .+.+..+ +...++.+.|+|+|+++++++.|...|.|.+||.++.+.+...++. .+..++|+|+|+++++
T Consensus 88 yd~~----~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK----GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc----ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEE
Confidence 9986 3345544 3567889999999988887765556788999999998888887655 4789999999999998
Q ss_pred eeeeeeecCCCeEEEEECCCCceeec
Q 019847 251 GHGFSASGDGNKLCLWKYPNMTKVGE 276 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d~~~~~~~~~ 276 (335)
.....-...|+.++||+.. |+++..
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEe
Confidence 7543333468999999984 555544
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-15 Score=128.79 Aligned_cols=239 Identities=16% Similarity=0.157 Sum_probs=149.0
Q ss_pred CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCC---CcEEEEecccCCeeeEEeecCCCCEEEEEeecCC
Q 019847 80 SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD---KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156 (335)
Q Consensus 80 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 156 (335)
..|.++|.. +...+.+..+...+.+.+|+| +++.|+..+.+ ..|.+||+.++.. ..+....+.+...+|+|||
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDG 251 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCC
Confidence 357777764 444455556778899999999 88888776643 3599999986653 2233345566789999999
Q ss_pred CEEEE-EeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEE--ECCCCceEEEeecC
Q 019847 157 NLLAS-GGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW--NVQKGTCIHGIDAK 233 (335)
Q Consensus 157 ~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~--d~~~~~~~~~~~~~ 233 (335)
+.|+. .+.+|...+|.++... .....+..+........|+|||+.++.++. .++...+| ++.+++........
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~--~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~--~~g~~~Iy~~~~~~g~~~~lt~~g 327 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADG--SGLRRLTQSSGIDTEPFFSPDGRSIYFTSD--RGGAPQIYRMPASGGAAQRVTFTG 327 (427)
T ss_pred CEEEEEEccCCCceEEEEECCC--CCcEECCCCCCCCcCeEEcCCCCEEEEEec--CCCCcEEEEEECCCCceEEEecCC
Confidence 98874 5677876666654221 123444445555667899999988877653 44555555 44555433222223
Q ss_pred CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCC-c--EEEEec
Q 019847 234 AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADE-T--IRFWEA 310 (335)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~--v~iw~~ 310 (335)
.......|+|+|++++.... .+.+..|.+||+.+++.... ... .......|+|||+.|+.++.++ . +.+.++
T Consensus 328 ~~~~~~~~SpDG~~Ia~~s~---~~g~~~I~v~d~~~g~~~~l-t~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 328 SYNTSPRISPDGKLLAYISR---VGGAFKLYVQDLATGQVTAL-TDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CCcCceEECCCCCEEEEEEc---cCCcEEEEEEECCCCCeEEc-cCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 33456789999999875421 01123799999988765433 222 2346789999999988877544 3 444445
Q ss_pred CCCCCCCCccccccccccceec
Q 019847 311 FGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 311 ~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
.+ ........+.+.+....++
T Consensus 403 ~g-~~~~~l~~~~g~~~~p~ws 423 (427)
T PRK02889 403 DG-RIKQRLSVQGGDVREPSWG 423 (427)
T ss_pred CC-CceEEeecCCCCCCCCccC
Confidence 32 2222232344445544443
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-14 Score=109.46 Aligned_cols=276 Identities=14% Similarity=0.194 Sum_probs=182.5
Q ss_pred eeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEE-EECC------CcEEEEeCCCce
Q 019847 20 KVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAV-GYMD------SKLQLWDAETSK 91 (335)
Q Consensus 20 ~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d------g~i~iw~~~~~~ 91 (335)
..++|+.+ ..++++.+...++|+.+.-+...........-.+..+-| ..++||. |+.+ ..+.|||=...+
T Consensus 9 lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 9 LSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 34889875 688888888999999876433222222111122333333 3445544 4332 479999977777
Q ss_pred eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC--CCCEEEEEeecCCCEEEE-EeCCCeE
Q 019847 92 LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH--SGEVCGLKWSNEGNLLAS-GGDDNVV 168 (335)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~-~~~dg~i 168 (335)
++.++. ...+|.++.+.+ +.+++.- .+.|++|...+..+....+... .....+++-..+..+||. |-.-|.|
T Consensus 87 ~i~el~-f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 87 CIIELS-FNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred EEEEEE-eccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 777776 678999999964 4555544 6789999988554444433322 233444433334445554 3456899
Q ss_pred EEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe-EEEEECCCCceEEEeec---CCcEeEEEeCCC
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC-IKIWNVQKGTCIHGIDA---KAQICGLEWNRH 244 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~-i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~ 244 (335)
+|-|+...... ....+..|.+.|.|++.+.+|. ++|+++ ..|+ |||||.++|+.+.+++. +..+.+++|+|+
T Consensus 162 Qi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt-~vATaS--tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 162 QIVDLASTKPN-APSIINAHDSDIACVALNLQGT-LVATAS--TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred EEEEhhhcCcC-CceEEEcccCceeEEEEcCCcc-EEEEec--cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 99998864432 3456678999999999999995 677765 5664 89999999999999975 457999999999
Q ss_pred CceeeeeeeeeeecCCCeEEEEECCCCceeec------------------------ccCCCCceeEeEEcCCCCEEEEEe
Q 019847 245 HKEILSGHGFSASGDGNKLCLWKYPNMTKVGE------------------------LQSSNSRILDLSQSPDGLTVATAG 300 (335)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~------------------------~~~~~~~i~~~~~~~~~~~l~~~~ 300 (335)
..++++. ++.|+++||.++....-.. ++-..+...-++|-.+.+.++..+
T Consensus 238 ~s~Lavs------SdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~ 311 (346)
T KOG2111|consen 238 SSWLAVS------SDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAIC 311 (346)
T ss_pred ccEEEEE------cCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEE
Confidence 9999887 8899999998865321111 111123344556766655666777
Q ss_pred CCCcEEEEecCC
Q 019847 301 ADETIRFWEAFG 312 (335)
Q Consensus 301 ~dg~v~iw~~~~ 312 (335)
.||.-+=+.+..
T Consensus 312 ~Dgsy~k~~f~~ 323 (346)
T KOG2111|consen 312 ADGSYYKFKFDP 323 (346)
T ss_pred eCCcEEEEEecc
Confidence 788765554443
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-15 Score=127.11 Aligned_cols=223 Identities=13% Similarity=0.106 Sum_probs=151.8
Q ss_pred CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeC---CCcEEEEecccCCeeeEEeecCCCCEEEEEeecCC
Q 019847 80 SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK---DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156 (335)
Q Consensus 80 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 156 (335)
..|.++|.. +...+.+..+...+...+|+| +++.|+..+. +..|.+||+.++.. ..+..+.+.+...+|+|||
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCC
Confidence 378888875 444556667888999999999 8888777653 46899999986653 3344566778889999999
Q ss_pred CEEE-EEeCCCe--EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC
Q 019847 157 NLLA-SGGDDNV--VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK 233 (335)
Q Consensus 157 ~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~ 233 (335)
+.|+ +.+.++. |++||+.... ...+..+........|+||++.++.+.....+..|+++|+..++........
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~----~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~ 333 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGT----TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG 333 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCc----eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC
Confidence 8876 4455554 7777876532 3344445556678999999988877653112347888998776654433344
Q ss_pred CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC------CcEEE
Q 019847 234 AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD------ETIRF 307 (335)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~i 307 (335)
.......|+|+|+.++.... ...+..|.+||+..+.. ..+.. ...+....|+|||+.|+..+.+ ..+.+
T Consensus 334 ~~~~~~~~SpdG~~ia~~~~---~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~ 408 (435)
T PRK05137 334 GRYSTPVWSPRGDLIAFTKQ---GGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYT 408 (435)
T ss_pred CcccCeEECCCCCEEEEEEc---CCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEE
Confidence 55677899999999976521 12235788899765543 22322 2346788999999988765543 25677
Q ss_pred EecCCCCC
Q 019847 308 WEAFGPSG 315 (335)
Q Consensus 308 w~~~~~~~ 315 (335)
+++.+...
T Consensus 409 ~dl~g~~~ 416 (435)
T PRK05137 409 VDLTGRNE 416 (435)
T ss_pred EECCCCce
Confidence 77766543
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.8e-16 Score=118.66 Aligned_cols=274 Identities=19% Similarity=0.278 Sum_probs=197.7
Q ss_pred eeecC-CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEE-ECCCcEEEEeCCCceeEeeeccc
Q 019847 22 IDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVG-YMDSKLQLWDAETSKLVRNLEGH 99 (335)
Q Consensus 22 ~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~ 99 (335)
.+|++ ++.++...+-.+.|-|.++-+..+.+.. -+.|..+.|..|..+++++ ..++.|.+|++...+-...+...
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c---ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC---LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH---HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 45666 4667777777899988888776555443 3567889999988877665 57889999999999999999999
Q ss_pred ccceeEeeecCCCC-CEEEEeeCCCcEEEEecccCCeee-----------------------------------------
Q 019847 100 HRRVATSSWNHWNG-HILTSGSKDKSIINHDVRVSNNVT----------------------------------------- 137 (335)
Q Consensus 100 ~~~v~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~----------------------------------------- 137 (335)
..++.+++|+| ++ .+|.+...+-.|.+|.+.+.....
T Consensus 91 ~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 91 QAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCcceeeeECC-CcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 99999999999 66 777788889999999986533100
Q ss_pred ---------------------------------EE-eecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC--------
Q 019847 138 ---------------------------------SC-IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK-------- 175 (335)
Q Consensus 138 ---------------------------------~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------- 175 (335)
.. .....-.+..++|+|.+++|++|+.|+.+|+.+--+
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~efl 249 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFL 249 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhc
Confidence 00 001123566788999889999999999988764110
Q ss_pred -------CC------------------------------------------cccceee------ccCCCCCeeEEEecCC
Q 019847 176 -------MS------------------------------------------SSKSLHR------FTDHCGGVKALAWSPH 200 (335)
Q Consensus 176 -------~~------------------------------------------~~~~~~~------~~~~~~~v~~~~~~~~ 200 (335)
+. ....++. +....-.+.-++|++|
T Consensus 250 hl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D 329 (447)
T KOG4497|consen 250 HLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD 329 (447)
T ss_pred cchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCC
Confidence 00 0000111 1112334667999999
Q ss_pred CCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC
Q 019847 201 QVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 201 ~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 280 (335)
.. ++++-....-+.+-+||+++.+....+....+|....|+|....++.. .....+++|.......+.. ...
T Consensus 330 s~-y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vc------tg~srLY~W~psg~~~V~v-P~~ 401 (447)
T KOG4497|consen 330 ST-YAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVC------TGKSRLYFWAPSGPRVVGV-PKK 401 (447)
T ss_pred ce-EEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEE------cCCceEEEEcCCCceEEec-CCC
Confidence 85 555543334468999999998888888888999999999999998877 3466788888765444433 333
Q ss_pred CCceeEeEEcCCCCEEEEEeCCCcEEE
Q 019847 281 NSRILDLSQSPDGLTVATAGADETIRF 307 (335)
Q Consensus 281 ~~~i~~~~~~~~~~~l~~~~~dg~v~i 307 (335)
.-.|..+.|..+|..++-.+.|....-
T Consensus 402 GF~i~~l~W~~~g~~i~l~~kDafc~a 428 (447)
T KOG4497|consen 402 GFNIQKLQWLQPGEFIVLCGKDAFCVA 428 (447)
T ss_pred CceeeeEEecCCCcEEEEEcCCceEEE
Confidence 457999999999999999999976543
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-16 Score=120.01 Aligned_cols=248 Identities=17% Similarity=0.266 Sum_probs=180.0
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce-----eEeeeccc------------ccceeEeeecCC-CCCEEEEe
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK-----LVRNLEGH------------HRRVATSSWNHW-NGHILTSG 119 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~------------~~~v~~~~~~~~-~~~~l~~~ 119 (335)
.+-|.++.|...|.+||+|..+|.|.++.-+... ....++.| ...|..+.|.+. +...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568999999999999999999999999754322 22233333 246888898763 34577888
Q ss_pred eCCCcEEEEecccCCeee-----------------------------------EEeecCCCCEEEEEeecCCCEEEEEeC
Q 019847 120 SKDKSIINHDVRVSNNVT-----------------------------------SCIKAHSGEVCGLKWSNEGNLLASGGD 164 (335)
Q Consensus 120 ~~dg~i~~~d~~~~~~~~-----------------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (335)
+.|.+|++|.+....... .....|.-.|+++.++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 899999999886432110 01135777899999999999888876
Q ss_pred CCeEEEEEccCCCcccceeeccCCC-----CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEE----Eeec---
Q 019847 165 DNVVRIWERSKMSSSKSLHRFTDHC-----GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIH----GIDA--- 232 (335)
Q Consensus 165 dg~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~----~~~~--- 232 (335)
|=.|.+|+++-....-.+-.+++++ .-|++..|+|..-++++-++ ..|+|++-|++...+-. .++.
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS--SKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS--SKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec--CCCcEEEeechhhhhhcchhhhhccccC
Confidence 7889999987654444444444432 34889999999888888776 89999999998543211 1110
Q ss_pred ----------CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEEC-CCCceeecccCCCC------------ce---eE
Q 019847 233 ----------KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY-PNMTKVGELQSSNS------------RI---LD 286 (335)
Q Consensus 233 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~-~~~~~~~~~~~~~~------------~i---~~ 286 (335)
-..|..+.|++.|+++++- +--+|++||+ ...+++.+++.|.. .| ..
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsR-------Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe 334 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSR-------DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE 334 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEe-------ccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence 1358889999999999975 2379999999 45667777665532 22 35
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 019847 287 LSQSPDGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 287 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
++|+.++.+++||+.....+++++..+..
T Consensus 335 c~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 335 CSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred EEEcCCcceEecccccceEEEecCCCCcc
Confidence 78999999999999999999999766543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-14 Score=120.48 Aligned_cols=248 Identities=13% Similarity=0.146 Sum_probs=162.0
Q ss_pred eeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCceeEeeecc
Q 019847 22 IDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETSKLVRNLEG 98 (335)
Q Consensus 22 ~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 98 (335)
+.+++ ..+++++.|+.|.++|+.+.+....+.. .....++++++||++++++. ..+.+.++|.++.+.++.+..
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~---G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV---GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec---CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence 55666 3577778899999999999998776654 33468899999999998876 689999999999999988764
Q ss_pred c-------ccceeEeeecCCCCC-EEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEE-eCCCeEE
Q 019847 99 H-------HRRVATSSWNHWNGH-ILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASG-GDDNVVR 169 (335)
Q Consensus 99 ~-------~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~ 169 (335)
. ...+..+..+| ... ++++--..+.|.+.|......+...............|+|++++++++ ..+..|-
T Consensus 119 ~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~ 197 (369)
T PF02239_consen 119 GGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIA 197 (369)
T ss_dssp -EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred ccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeE
Confidence 3 24567788888 555 455555568898889876655444444456677889999999987765 3455677
Q ss_pred EEEccCCCc----------------------------------------------------ccceeeccCCCCCeeEEEe
Q 019847 170 IWERSKMSS----------------------------------------------------SKSLHRFTDHCGGVKALAW 197 (335)
Q Consensus 170 iwd~~~~~~----------------------------------------------------~~~~~~~~~~~~~v~~~~~ 197 (335)
++|.++... .+.++.+.....+ ..+..
T Consensus 198 viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~t 276 (369)
T PF02239_consen 198 VIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKT 276 (369)
T ss_dssp EEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE-
T ss_pred EEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeec
Confidence 776544211 0111122222223 56777
Q ss_pred cCCCCcEEEE-ecCCCCCeEEEEECCCCceEEEeecCC--cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee
Q 019847 198 SPHQVNVLAT-GGGREDGCIKIWNVQKGTCIHGIDAKA--QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV 274 (335)
Q Consensus 198 ~~~~~~~~~~-~~g~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 274 (335)
+|+++++.+. ..+...+.|.++|.++.+.+..+.... .+..+.|+++|+++..+.. ..++.|.+||..+.+.+
T Consensus 277 hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~----~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 277 HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVW----DGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp -TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE------TTEEEEEETTTTEEE
T ss_pred CCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEe----cCCCEEEEEECCCcEEE
Confidence 9999888886 111256899999999998888876543 4999999999999877643 44559999999999998
Q ss_pred eccc
Q 019847 275 GELQ 278 (335)
Q Consensus 275 ~~~~ 278 (335)
..+.
T Consensus 353 ~~i~ 356 (369)
T PF02239_consen 353 KRIP 356 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
|
... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-13 Score=106.65 Aligned_cols=279 Identities=11% Similarity=0.183 Sum_probs=191.5
Q ss_pred CCeEEEEEecC--CceeeEEeecCCCCCceEEEEcCCCCEEEEEEC---CCcEEEEeCCC--cee--EeeecccccceeE
Q 019847 35 GPVLFLWKWEN--GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM---DSKLQLWDAET--SKL--VRNLEGHHRRVAT 105 (335)
Q Consensus 35 ~~~i~vw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~--~~~--~~~~~~~~~~v~~ 105 (335)
+..|++|++++ +++ ....+-.+...++-++|+|+++.|.++.. +|.|.-|.++. |++ +........+.+.
T Consensus 15 s~gI~v~~ld~~~g~l-~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGEL-SLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCccccc-chhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 67899999984 332 22333456777899999999999988864 47788887764 443 2223333345588
Q ss_pred eeecCCCCCEEEEee-CCCcEEEEecccCCeeeE--EeecCCCC----------EEEEEeecCCCEEEEEeCC-CeEEEE
Q 019847 106 SSWNHWNGHILTSGS-KDKSIINHDVRVSNNVTS--CIKAHSGE----------VCGLKWSNEGNLLASGGDD-NVVRIW 171 (335)
Q Consensus 106 ~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~--~~~~~~~~----------i~~~~~~~~~~~l~~~~~d-g~i~iw 171 (335)
++.++ ++++++++. ..|.|.++-++....+.. ....|.+. +....+.|++++|++.+.. -.|.+|
T Consensus 94 vsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 94 VSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 99999 888888776 457999999976543221 12234444 7888999999999988632 369999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-ceEEEee----------cCCcEeEEE
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-TCIHGID----------AKAQICGLE 240 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~----------~~~~~~~~~ 240 (335)
++..+................+-+.|+|+++...+..- .+++|.+|..... ..+..++ .......+.
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E--L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE--LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEec--cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence 98865432222222234456788999999998777765 8999999998773 2222221 244678899
Q ss_pred eCCCCceeeeeeeeeeecCCCeEEEEECCCC-cee---ecccCCCCceeEeEEcCCCCEEEEEeCC-CcEEEEecCCCCC
Q 019847 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPNM-TKV---GELQSSNSRILDLSQSPDGLTVATAGAD-ETIRFWEAFGPSG 315 (335)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~v~iw~~~~~~~ 315 (335)
.+++|++|.++.. ....|.+|.+... ..+ .....+....+.+.+++.+++|+++.++ ..|.+|..+....
T Consensus 251 is~dGrFLYasNR-----g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 251 ISPDGRFLYASNR-----GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred ECCCCCEEEEecC-----CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence 9999999988753 3457888877543 222 2223344446889999999999999875 4699999887766
Q ss_pred CCCcccc
Q 019847 316 DEDSVSH 322 (335)
Q Consensus 316 ~~~~~~~ 322 (335)
.......
T Consensus 326 ~L~~~~~ 332 (346)
T COG2706 326 RLTLLGR 332 (346)
T ss_pred eEEeccc
Confidence 5544433
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-16 Score=128.97 Aligned_cols=167 Identities=20% Similarity=0.314 Sum_probs=127.7
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecC--CCCCceEEEEcCCC-CEEEEEECCCcEEEEeCCC--------------c
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPG--EDDYPTSVSWSHDA-KTLAVGYMDSKLQLWDAET--------------S 90 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~--------------~ 90 (335)
.++.+-..|.|.+.|....+..+++.... .+..|+|+.|-|.+ ..++++-.+|.+++||.+- +
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~ 266 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG 266 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence 56777777888888876644333332222 24789999999944 4566677899999997531 1
Q ss_pred --------------eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCC
Q 019847 91 --------------KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156 (335)
Q Consensus 91 --------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 156 (335)
.++..+.-....|...+|+| ++.+||+.+.||.++|||..+.+ +....+..-+...|++|+|||
T Consensus 267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLLCvcWSPDG 344 (636)
T KOG2394|consen 267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQE-LLGVMKSYFGGLLCVCWSPDG 344 (636)
T ss_pred CeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHH-HHHHHHhhccceEEEEEcCCc
Confidence 11112222345888999999 99999999999999999998544 344555566789999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecC
Q 019847 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199 (335)
Q Consensus 157 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 199 (335)
+++++|++|--|.||.+.. .+.+..-.+|++.|..++|.|
T Consensus 345 KyIvtGGEDDLVtVwSf~e---rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 345 KYIVTGGEDDLVTVWSFEE---RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cEEEecCCcceEEEEEecc---ceEEEeccccccceeeEeecc
Confidence 9999999999999999665 567888899999999999997
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.7e-17 Score=124.09 Aligned_cols=225 Identities=17% Similarity=0.209 Sum_probs=152.9
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeec
Q 019847 63 SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA 142 (335)
Q Consensus 63 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 142 (335)
-++|+|+|+++|+.+.- .+.|-|.++-+..+.+. --..|..+.|....-..|.....++.|.+|++...+- ...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEecc
Confidence 46799999999999755 78889988877666554 3467888899884555666677899999999986654 444566
Q ss_pred CCCCEEEEEeecCCCE-EEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC--eEEEE
Q 019847 143 HSGEVCGLKWSNEGNL-LASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG--CIKIW 219 (335)
Q Consensus 143 ~~~~i~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~ 219 (335)
...++.+++|+|+|+. |.+...|-.|.+|.+.+... ..+.-.+..+..++|+|+|++...... .|. .+.+.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~----~~~~~pK~~~kg~~f~~dg~f~ai~sR--rDCkdyv~i~ 163 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG----YLLPHPKTNVKGYAFHPDGQFCAILSR--RDCKDYVQIS 163 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEecccee----EEecccccCceeEEECCCCceeeeeec--ccHHHHHHHH
Confidence 7788999999999954 55666788999999886321 122223445688999999975444432 222 12222
Q ss_pred ECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEE
Q 019847 220 NVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVAT 298 (335)
Q Consensus 220 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 298 (335)
.-.....+..++.+ -..+.+.|+|+|..+++ ||.--.-.+..+. -.-.+..++|+|.+++|+.
T Consensus 164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------------wd~~Leykv~aYe-~~lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------------WDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAV 227 (447)
T ss_pred hhHHHHHHHhcCCCcccccCceECCCCcEEEE---------------ecchhhheeeeee-eccceeEEEeccccceEEe
Confidence 22233344444443 36788999999877764 4421111111111 1235888999999999999
Q ss_pred EeCCCcEEEEecCC
Q 019847 299 AGADETIRFWEAFG 312 (335)
Q Consensus 299 ~~~dg~v~iw~~~~ 312 (335)
|+.|+.+|+-+--+
T Consensus 228 GsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 228 GSYDQMLRVLNHFT 241 (447)
T ss_pred eccchhhhhhceee
Confidence 99999999855433
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-15 Score=116.51 Aligned_cols=263 Identities=13% Similarity=0.135 Sum_probs=186.9
Q ss_pred ccccceeeeecCC---ceEEEe-cCCeEEEEEecCCceeeEE----eecCCCCCceEEEEcCCCCEEEEEECCCcEEEEe
Q 019847 15 EDYYSKVIDWGRN---NVLAVA-LGPVLFLWKWENGKVKKLL----QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 15 ~~~~~~~~~~~~~---~~~~~~-~~~~i~vw~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 86 (335)
....+..+.|..+ .++.+. .+..+..+.++...+.... .......+|..++.. ...|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 3445566666542 344444 5666666666655543332 233345566666553 33678888899999999
Q ss_pred CCCce----eEeeecccccceeEeeecCCCCCEEEEeeCC--CcEEEEecccCCeeeEEeec--------CCCCEEEEEe
Q 019847 87 AETSK----LVRNLEGHHRRVATSSWNHWNGHILTSGSKD--KSIINHDVRVSNNVTSCIKA--------HSGEVCGLKW 152 (335)
Q Consensus 87 ~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~~~d~~~~~~~~~~~~~--------~~~~i~~~~~ 152 (335)
.+.+. .+..+. ...++..+.-.+....++++|+.. ..+.+||++...++...-.. -.-.++++.|
T Consensus 132 ~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 87443 233333 235677777778778888889999 89999999876443322111 1224678889
Q ss_pred ecC--CCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEE-
Q 019847 153 SNE--GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHG- 229 (335)
Q Consensus 153 ~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~- 229 (335)
-+. ...||+++.-+.+++||.+.. .+++..+.-...+++++...|.+..+++ +. .-+.+..||++.++....
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~q--RRPV~~fd~~E~~is~~~l~p~gn~Iy~-gn--~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQ--RRPVAQFDFLENPISSTGLTPSGNFIYT-GN--TKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCccc--CcceeEeccccCcceeeeecCCCcEEEE-ec--ccchhheecccCceeeccc
Confidence 886 889999999999999999854 4567777777889999999999975555 33 789999999999988776
Q ss_pred eec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCC
Q 019847 230 IDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 230 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
+.. .+.+.++..+|.+++++++ +-|..++|+|+++.+++..... ...++++-+.++
T Consensus 286 ~kg~tGsirsih~hp~~~~las~------GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 286 LKGITGSIRSIHCHPTHPVLASC------GLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDD 342 (412)
T ss_pred cCCccCCcceEEEcCCCceEEee------ccceeEEEeecccchhhhhhhh-hccccEEEecCC
Confidence 443 5689999999999999987 7799999999999777655432 234667776554
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-14 Score=121.15 Aligned_cols=249 Identities=13% Similarity=0.121 Sum_probs=153.9
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEE---EEECC--CcEEEEeCCCceeEeeecccccceeEeeecC
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLA---VGYMD--SKLQLWDAETSKLVRNLEGHHRRVATSSWNH 110 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~~~~d--g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 110 (335)
..|.+.|.+.++..++. ........-+|+|||+.++ +...+ ..|.+.++.+++... +....+.....+|+|
T Consensus 165 ~~l~~~d~dG~~~~~lt---~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSP 240 (428)
T PRK01029 165 GELWSVDYDGQNLRPLT---QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSP 240 (428)
T ss_pred ceEEEEcCCCCCceEcc---cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECC
Confidence 36778887776654332 3445567889999997532 33333 357888888775433 333445556789999
Q ss_pred CCCCEEEEeeC-CC----cEEEEecccC--CeeeEEeecCCCCEEEEEeecCCCEEEEEe-CCCeEEEEEccCCCcccce
Q 019847 111 WNGHILTSGSK-DK----SIINHDVRVS--NNVTSCIKAHSGEVCGLKWSNEGNLLASGG-DDNVVRIWERSKMSSSKSL 182 (335)
Q Consensus 111 ~~~~~l~~~~~-dg----~i~~~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 182 (335)
+++.|+..+. +| .+..|++..+ .................+|+|||+.|+..+ .+|...+|.+.........
T Consensus 241 -DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 241 -RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred -CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 8877765442 33 3444676542 222333333333456789999999888766 4665555543321111123
Q ss_pred eeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCe
Q 019847 183 HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNK 262 (335)
Q Consensus 183 ~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (335)
..+..+...+....|+|||+.++.+........|.+||+.+++..........+....|+|+|+.++.... ......
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~---~~g~~~ 396 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAG---NSNESE 396 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEEC---CCCCce
Confidence 33333445677899999998888776411134799999998876544434446678999999998875321 123567
Q ss_pred EEEEECCCCceeecccCCCCceeEeEEcCCC
Q 019847 263 LCLWKYPNMTKVGELQSSNSRILDLSQSPDG 293 (335)
Q Consensus 263 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 293 (335)
|.++|+..++..... ...+.+...+|+|-.
T Consensus 397 L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 397 LYLISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence 899998877654333 334456677888753
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-14 Score=122.19 Aligned_cols=219 Identities=16% Similarity=0.203 Sum_probs=144.2
Q ss_pred cEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCC---CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCC
Q 019847 81 KLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD---KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (335)
.|.++|....+ .+.+..+...+....|+| +++.|+.+..+ ..|++||+.++.. ..+..+...+.+++|+|+++
T Consensus 171 ~l~~~d~~g~~-~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 171 ELQVADYDGAN-PQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred eEEEEcCCCCC-CEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 68888875443 444555667788999999 88888877644 4799999986643 22334556677899999998
Q ss_pred EEEEE-eCCC--eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC
Q 019847 158 LLASG-GDDN--VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA 234 (335)
Q Consensus 158 ~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~ 234 (335)
.|+.. +.++ .|++||+.+.. ...+..+........|+|+++.++.+........|+++|+.+++.........
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~ 322 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQ----LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGG 322 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCC----EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC
Confidence 77654 4444 58888877532 23333344445577899999888776531112368888988776544333455
Q ss_pred cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCC---cEEEEecC
Q 019847 235 QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADE---TIRFWEAF 311 (335)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~v~iw~~~ 311 (335)
......|+|+++.++.... ......|.+||+.++... .+... .......|+||+++|+..+.++ .+.+.+..
T Consensus 323 ~~~~~~~spdg~~i~~~~~---~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHR---EGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CccCeEECCCCCEEEEEEc---cCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 6678899999998887631 011237889998875543 22222 2245568999999888877654 35555544
Q ss_pred C
Q 019847 312 G 312 (335)
Q Consensus 312 ~ 312 (335)
.
T Consensus 398 g 398 (417)
T TIGR02800 398 G 398 (417)
T ss_pred C
Confidence 4
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=127.42 Aligned_cols=232 Identities=16% Similarity=0.292 Sum_probs=185.2
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT 137 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 137 (335)
.-..+.+.++.+|++|+.|+..|.+..+|..++++..++. -...|.++.|.. +..+++++ ....+++||-. +.+ +
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LH-neq~~AVA-QK~y~yvYD~~-GtE-l 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLH-NEQFFAVA-QKKYVYVYDNN-GTE-L 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhc-chHHHHhh-hhceEEEecCC-CcE-E
Confidence 3456889999999999999999999999999999988887 457899999987 66666654 56789999965 443 4
Q ss_pred EEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEE
Q 019847 138 SCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIK 217 (335)
Q Consensus 138 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (335)
.++.. ...|..+.|-|..-+|++++..|.++.-|+..+. .+..+....+.+..++-+|-+. ++-.|. ..|+|.
T Consensus 204 HClk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk---lVa~~~t~~G~~~vm~qNP~Na-Vih~Gh--snGtVS 276 (545)
T KOG1272|consen 204 HCLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK---LVASIRTGAGRTDVMKQNPYNA-VIHLGH--SNGTVS 276 (545)
T ss_pred eehhh-cCchhhhcccchhheeeecccCCceEEEeechhh---hhHHHHccCCccchhhcCCccc-eEEEcC--CCceEE
Confidence 44443 3568899999998899999999999999988754 4555555677888888899874 666655 899999
Q ss_pred EEECCCCceEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEE
Q 019847 218 IWNVQKGTCIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTV 296 (335)
Q Consensus 218 i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 296 (335)
+|.....+++..+- +.+++.++++.++|.++++. +.|..++|||+++...+.++.. ..+...+++|..| +|
T Consensus 277 lWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTt------G~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lL 348 (545)
T KOG1272|consen 277 LWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATT------GLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LL 348 (545)
T ss_pred ecCCCCcchHHHHHhcCCCcceEEECCCCcEEeec------ccccceeEeeeccccccceeec-CCCcccccccccc-ce
Confidence 99998888776654 56799999999999999987 7899999999999887776655 3456788888876 34
Q ss_pred EEEeCCCcEEEEec
Q 019847 297 ATAGADETIRFWEA 310 (335)
Q Consensus 297 ~~~~~dg~v~iw~~ 310 (335)
| .+....|.||.=
T Consensus 349 A-~~~G~~v~iw~d 361 (545)
T KOG1272|consen 349 A-LSYGDHVQIWKD 361 (545)
T ss_pred e-eecCCeeeeehh
Confidence 4 445568999953
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-15 Score=114.73 Aligned_cols=284 Identities=18% Similarity=0.298 Sum_probs=190.3
Q ss_pred ccccceeeeecCCceEEEecCCeEEEEEe-cCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC----C
Q 019847 15 EDYYSKVIDWGRNNVLAVALGPVLFLWKW-ENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE----T 89 (335)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~i~vw~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~----~ 89 (335)
+..+-..+-.-.+.++.++.|.+++||-- +.++.-+.+.. ....+++++.+.++...|++|-.+|++.-+.+. .
T Consensus 25 d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnk 103 (404)
T KOG1409|consen 25 DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNK 103 (404)
T ss_pred hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhh
Confidence 33334444445578999999999999964 44544333322 235778999999999999999999999988653 3
Q ss_pred ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEE---------------------------------------ec
Q 019847 90 SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINH---------------------------------------DV 130 (335)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~---------------------------------------d~ 130 (335)
...++....|...+..+.|+- ....+++.+.|..+.-- .+
T Consensus 104 m~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~ 182 (404)
T KOG1409|consen 104 MTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKL 182 (404)
T ss_pred cchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEE
Confidence 445566667888888888876 66666666665443211 11
Q ss_pred c-cCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEec
Q 019847 131 R-VSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 131 ~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
. +.-.+...+.+|.+.+.+++|.|..+.|.+|..|..+.+||+-.. ......+.+|...|..+...+.-..+++++
T Consensus 183 ~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~--~g~~~el~gh~~kV~~l~~~~~t~~l~S~~- 259 (404)
T KOG1409|consen 183 EQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR--KGTAYELQGHNDKVQALSYAQHTRQLISCG- 259 (404)
T ss_pred eecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC--cceeeeeccchhhhhhhhhhhhheeeeecc-
Confidence 1 011234557789999999999999999999999999999998643 334566778999999998888777777766
Q ss_pred CCCCCeEEEEECCCCceEEE-e---------e--------------------c-----CCcEeEEEeCCCCceeeeeeee
Q 019847 210 GREDGCIKIWNVQKGTCIHG-I---------D--------------------A-----KAQICGLEWNRHHKEILSGHGF 254 (335)
Q Consensus 210 g~~d~~i~i~d~~~~~~~~~-~---------~--------------------~-----~~~~~~~~~~~~~~~~~~~~~~ 254 (335)
.||.|.+||+...+.... . . + ...+...+-+....+...|.
T Consensus 260 --edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~-- 335 (404)
T KOG1409|consen 260 --EDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGF-- 335 (404)
T ss_pred --CCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccc--
Confidence 799999999875432110 0 0 0 01122222222222222222
Q ss_pred eeecCCCeEEEEECC-------CCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 255 SASGDGNKLCLWKYP-------NMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 255 ~~~~~~~~i~i~d~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
.-.+++-|.- +..+++.+..-...|+.+.+...-.+|+|+|.|..|+|||+..
T Consensus 336 -----e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 336 -----EFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred -----eeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 2334443321 1233444444344699999988888999999999999999874
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.3e-14 Score=120.62 Aligned_cols=237 Identities=16% Similarity=0.159 Sum_probs=151.0
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC---CcEEEEeCCCceeEeeecccccceeEeeecCCCC
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD---SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNG 113 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 113 (335)
.|.++|.+......+ ..+...+...+|+|+|++|+.+..+ ..|++||+.+++... +..+...+.++.|+| ++
T Consensus 171 ~l~~~d~~g~~~~~l---~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~sp-Dg 245 (417)
T TIGR02800 171 ELQVADYDGANPQTI---TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSP-DG 245 (417)
T ss_pred eEEEEcCCCCCCEEe---ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CC
Confidence 688888765554332 2456678899999999999987644 479999999876543 333556677789999 77
Q ss_pred CEEE-EeeCCC--cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC-C--eEEEEEccCCCcccceeeccC
Q 019847 114 HILT-SGSKDK--SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD-N--VVRIWERSKMSSSKSLHRFTD 187 (335)
Q Consensus 114 ~~l~-~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~ 187 (335)
+.|+ +.+.++ .|++||+.++. ...+..+........|+|+++.|+..+.. + .|+++|+.... ...+..
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~ 319 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTF 319 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeec
Confidence 6555 555554 58888887544 23334454555677899999988776643 3 57777766432 223333
Q ss_pred CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEE
Q 019847 188 HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK 267 (335)
Q Consensus 188 ~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 267 (335)
+........|+|+++.++.+........|.+||+.++... .+..........|+|+++.++.... ......+.+.+
T Consensus 320 ~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l~~~~~---~~~~~~l~~~~ 395 (417)
T TIGR02800 320 RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNGRMILYATT---RGGRGVLGLVS 395 (417)
T ss_pred CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCCCEEEEEEe---CCCcEEEEEEE
Confidence 4455678899999987777663111127899999876543 3332333456689999998876532 11123466666
Q ss_pred CCCCceeecccCCCCceeEeEE
Q 019847 268 YPNMTKVGELQSSNSRILDLSQ 289 (335)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~ 289 (335)
.. ++....+..+.+.+..++|
T Consensus 396 ~~-g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 396 TD-GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred CC-CceeeECCCCCCCcCCCCC
Confidence 43 4444455444445555554
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-13 Score=117.32 Aligned_cols=238 Identities=15% Similarity=0.091 Sum_probs=148.3
Q ss_pred cEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCC---CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCC
Q 019847 81 KLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD---KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (335)
.|.++|.+.++ .+.+..+...+....|+| +++.|+..+.+ ..|.+||+.++.. ..+....+.+....|+|||+
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCC
Confidence 47778876544 344555677889999999 88877765533 3688999986653 22333444556789999999
Q ss_pred EEEE-EeCCC--eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC
Q 019847 158 LLAS-GGDDN--VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA 234 (335)
Q Consensus 158 ~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~ 234 (335)
.|+. .+.+| .|+++|+.+.. ...+..+........|+|+++.++.+........|+++|+.+++.........
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~----~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~ 331 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQ----LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGN 331 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCC----eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC
Confidence 8874 44454 58888987543 23334455556678999999888777541112468888888776543322233
Q ss_pred cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC-C--cEEEEecC
Q 019847 235 QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD-E--TIRFWEAF 311 (335)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~v~iw~~~ 311 (335)
......|+|+|+.++.... ......|.++|+.+++....... .......|+|||++++..+.+ | .+.++++.
T Consensus 332 ~~~~~~~Spdg~~i~~~~~---~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 332 YNARPRLSADGKTLVMVHR---QDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CccceEECCCCCEEEEEEc---cCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 3446789999999876521 01123688899988765332222 222356899999998876643 3 46666665
Q ss_pred CCCCCCCccccccccccceec
Q 019847 312 GPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 312 ~~~~~~~~~~~~~~i~~~~~~ 332 (335)
+... .....+...+....++
T Consensus 407 g~~~-~~l~~~~g~~~~p~ws 426 (430)
T PRK00178 407 GRVR-LPLPTAQGEVREPSWS 426 (430)
T ss_pred CCce-EECcCCCCCcCCCccC
Confidence 4333 1222333344444443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.3e-15 Score=115.66 Aligned_cols=242 Identities=14% Similarity=0.176 Sum_probs=169.4
Q ss_pred ccccceeeeecCC-ceEE-EecCCeEEEEEecCC------ceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEe
Q 019847 15 EDYYSKVIDWGRN-NVLA-VALGPVLFLWKWENG------KVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~-~~~~~~i~vw~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 86 (335)
+...++++.|+.+ ++++ ++.|..+++|+++.. +.+.+. -..|.+.|.|++|.....++.+|..+++|...|
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~-~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM-EHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceec-cCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 4567899999875 4444 556789999998642 222221 134678999999999999999999999999999
Q ss_pred CCCceeEeeecc--cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee--EEeecCCCCEEEEEeec-CCCEEEE
Q 019847 87 AETSKLVRNLEG--HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT--SCIKAHSGEVCGLKWSN-EGNLLAS 161 (335)
Q Consensus 87 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~~~i~~~~~~~-~~~~l~~ 161 (335)
+++.+.+..+.. ..+.|..+..+| ..+.|++.+.++.|.+||.+...... ..+.........+.|+| ...+|++
T Consensus 134 iEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 134 IETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV 212 (609)
T ss_pred cccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence 999888776652 235899999999 79999999999999999998655322 22334556778899999 5678889
Q ss_pred EeCCCeEEEEEccCCCcccc--------------------------e-----------eec--------c-CCC------
Q 019847 162 GGDDNVVRIWERSKMSSSKS--------------------------L-----------HRF--------T-DHC------ 189 (335)
Q Consensus 162 ~~~dg~i~iwd~~~~~~~~~--------------------------~-----------~~~--------~-~~~------ 189 (335)
.+..+-+.+||++....... + ..+ + .|+
T Consensus 213 ~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N 292 (609)
T KOG4227|consen 213 NSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCN 292 (609)
T ss_pred ccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCccee
Confidence 99999999999875321000 0 000 0 011
Q ss_pred -CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-----------------------ceEEEeecC-CcEeEEEeCCC
Q 019847 190 -GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-----------------------TCIHGIDAK-AQICGLEWNRH 244 (335)
Q Consensus 190 -~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-----------------------~~~~~~~~~-~~~~~~~~~~~ 244 (335)
..+.+++|..+ +-+++|+ .+-.|++|.+... +.+..++++ .-+..+.|+|.
T Consensus 293 ~~T~KS~~F~~D--~~v~tGS--D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H 368 (609)
T KOG4227|consen 293 IKTIKSMTFIDD--YTVATGS--DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQH 368 (609)
T ss_pred eeeeeeeeeecc--eeeeccC--cccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCC
Confidence 11334444433 3355554 8889999987531 112333443 35678999999
Q ss_pred CceeeeeeeeeeecCCCeEEEEEC
Q 019847 245 HKEILSGHGFSASGDGNKLCLWKY 268 (335)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~i~d~ 268 (335)
...+++. +-.+.+++|.-
T Consensus 369 ~~~l~SS------GVE~~~KlWS~ 386 (609)
T KOG4227|consen 369 NNLLVSS------GVENSFKLWSD 386 (609)
T ss_pred cceEecc------chhhheecccc
Confidence 8888766 66899999964
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-13 Score=117.61 Aligned_cols=238 Identities=13% Similarity=0.116 Sum_probs=150.5
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC---CcEEEEeCCCceeEeeecccccceeEeeecCCCC
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD---SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNG 113 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 113 (335)
.+.++|.+......+ ..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +...........|+| ++
T Consensus 199 ~l~i~d~dG~~~~~l---~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSP-DG 273 (448)
T PRK04792 199 QLMIADYDGYNEQML---LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSP-DG 273 (448)
T ss_pred EEEEEeCCCCCceEe---ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECC-CC
Confidence 677778766554322 2456678899999999999877543 258899998876533 222233445789999 77
Q ss_pred CEEE-EeeCCCc--EEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC-CC--eEEEEEccCCCcccceeeccC
Q 019847 114 HILT-SGSKDKS--IINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD-DN--VVRIWERSKMSSSKSLHRFTD 187 (335)
Q Consensus 114 ~~l~-~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~ 187 (335)
+.|+ +.+.+|. |+++|+.++. ...+..+.......+|+||++.|+..+. ++ .|+++|+..+.. ..+ ++.
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~L-t~~- 348 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-SRL-TFE- 348 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEE-ecC-
Confidence 7665 5566675 7777876544 2334445556678899999998877654 33 466667654321 112 122
Q ss_pred CCCCeeEEEecCCCCcEEEEecCCCCC--eEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEE
Q 019847 188 HCGGVKALAWSPHQVNVLATGGGREDG--CIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265 (335)
Q Consensus 188 ~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 265 (335)
........|+|+|+.++.+.. .++ .|.++|+.+++... +..........|+|+|+.++.... ......+.+
T Consensus 349 -g~~~~~~~~SpDG~~l~~~~~--~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~---~~g~~~l~~ 421 (448)
T PRK04792 349 -GEQNLGGSITPDGRSMIMVNR--TNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTT---YQGKQVLAA 421 (448)
T ss_pred -CCCCcCeeECCCCCEEEEEEe--cCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEe---cCCceEEEE
Confidence 222345789999988877754 344 56667888776532 322222234589999998876421 112234777
Q ss_pred EECCCCceeecccCCCCceeEeEEcCC
Q 019847 266 WKYPNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 266 ~d~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
++. ++.....+..+.+.+...+|+|-
T Consensus 422 ~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 422 VSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EEC-CCCceEECcCCCCCcCCCccCCC
Confidence 786 45555666666666788888873
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-13 Score=117.61 Aligned_cols=238 Identities=14% Similarity=0.143 Sum_probs=153.1
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC---CcEEEEeCCCceeEeeecccccceeEeeecCCCC
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD---SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNG 113 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 113 (335)
.|.++|.+.++... +..+...+...+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+| ++
T Consensus 180 ~l~~~d~~g~~~~~---l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~Sp-DG 254 (430)
T PRK00178 180 TLQRSDYDGARAVT---LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSP-DG 254 (430)
T ss_pred EEEEECCCCCCceE---EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECC-CC
Confidence 47777877665433 22456778999999999999877643 368999998886543 333344556789999 77
Q ss_pred CEEE-EeeCCC--cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC-CC--eEEEEEccCCCcccceeeccC
Q 019847 114 HILT-SGSKDK--SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD-DN--VVRIWERSKMSSSKSLHRFTD 187 (335)
Q Consensus 114 ~~l~-~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~ 187 (335)
+.|+ +...+| .|+++|+.++.. ..+..+........|+||++.++..+. +| .|+++|+..+.. ..+. ..
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-~~lt-~~- 329 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQL--SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-ERVT-FV- 329 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCe--EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEee-cC-
Confidence 7665 555555 588888876542 334445555677899999998877664 33 577777665432 1121 11
Q ss_pred CCCCeeEEEecCCCCcEEEEecCCCCC--eEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEE
Q 019847 188 HCGGVKALAWSPHQVNVLATGGGREDG--CIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265 (335)
Q Consensus 188 ~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 265 (335)
........|+|+++.++.+.. .++ .|.++|+.+++.. .+..........|+|+|+.++.... ......+.+
T Consensus 330 -~~~~~~~~~Spdg~~i~~~~~--~~~~~~l~~~dl~tg~~~-~lt~~~~~~~p~~spdg~~i~~~~~---~~g~~~l~~ 402 (430)
T PRK00178 330 -GNYNARPRLSADGKTLVMVHR--QDGNFHVAAQDLQRGSVR-ILTDTSLDESPSVAPNGTMLIYATR---QQGRGVLML 402 (430)
T ss_pred -CCCccceEECCCCCEEEEEEc--cCCceEEEEEECCCCCEE-EccCCCCCCCceECCCCCEEEEEEe---cCCceEEEE
Confidence 222345789999988877764 333 6889999887653 3332223335689999999876521 112345777
Q ss_pred EECCCCceeecccCCCCceeEeEEcCC
Q 019847 266 WKYPNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 266 ~d~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
++... .....+..+.+.+...+|+|-
T Consensus 403 ~~~~g-~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 403 VSING-RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECCC-CceEECcCCCCCcCCCccCCC
Confidence 77743 333445555566777788774
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-12 Score=103.85 Aligned_cols=269 Identities=13% Similarity=0.054 Sum_probs=168.3
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC----------CCcEEEEeCCCceeEeeeccccc----
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM----------DSKLQLWDAETSKLVRNLEGHHR---- 101 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~---- 101 (335)
+.|.+.|.++.+.+..+... .....+ ++||++.|+++.. +..|.+||..+.+.+.++.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G---~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGG---FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEcc---CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 89999999999887766542 222344 9999998887765 67999999999999988874222
Q ss_pred ---ceeEeeecCCCCCEEEEee-C-CCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCC
Q 019847 102 ---RVATSSWNHWNGHILTSGS-K-DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 102 ---~v~~~~~~~~~~~~l~~~~-~-dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 176 (335)
....++++| ++++|+... . +..+.+.|+.+.+.+...-. .+...-...+++ ..++. +.||......+...
T Consensus 103 ~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~-~~~~~-~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 103 VGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTAND-TFFMH-CRDGSLAKVGYGTK 177 (352)
T ss_pred ccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCC-ccEEE-eecCceEEEEecCC
Confidence 334788899 888888766 3 68999999997765443322 222222222222 22222 23555444433322
Q ss_pred Ccccc--eeeccCCCCCee-EEEecC-CCCcEEEEecCCCCCeEEEEECCCC-----ceEEEeec--------CCcEeEE
Q 019847 177 SSSKS--LHRFTDHCGGVK-ALAWSP-HQVNVLATGGGREDGCIKIWNVQKG-----TCIHGIDA--------KAQICGL 239 (335)
Q Consensus 177 ~~~~~--~~~~~~~~~~v~-~~~~~~-~~~~~~~~~~g~~d~~i~i~d~~~~-----~~~~~~~~--------~~~~~~~ 239 (335)
..... ...+.....++. .-.+.+ ++..++++. .|.|.+.|+... +....+.. +.....+
T Consensus 178 g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~----eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 178 GNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY----TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred CceEEeeeeeecCCccccccCCceEcCCCcEEEEec----CCeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 11110 111111011110 003455 776666664 599999996543 22222211 1223349
Q ss_pred EeCCCCceeeeeee-ee---eecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCC-EEEEEe-CCCcEEEEecCCC
Q 019847 240 EWNRHHKEILSGHG-FS---ASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGL-TVATAG-ADETIRFWEAFGP 313 (335)
Q Consensus 240 ~~~~~~~~~~~~~~-~~---~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~v~iw~~~~~ 313 (335)
+++|+++.+++... -. --...+.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.|.+.|..+.
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 99999998876310 00 001236899999999999988875 34688999999999 887776 5788999999887
Q ss_pred CCCCC
Q 019847 314 SGDED 318 (335)
Q Consensus 314 ~~~~~ 318 (335)
+....
T Consensus 333 k~i~~ 337 (352)
T TIGR02658 333 KELSS 337 (352)
T ss_pred eEEee
Confidence 66554
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-13 Score=103.29 Aligned_cols=270 Identities=19% Similarity=0.217 Sum_probs=187.5
Q ss_pred CCeEEEEEecCCceeeEEeec-CCCCCceEEEEcC---CCC-EEEEEECCCcEEEEeCCCceeEeeecccc------cce
Q 019847 35 GPVLFLWKWENGKVKKLLQVP-GEDDYPTSVSWSH---DAK-TLAVGYMDSKLQLWDAETSKLVRNLEGHH------RRV 103 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~~~---~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~~v 103 (335)
.|.+.+|++...+..+.-.+. ...+.+..+.|.. +|. .++-+..+|.|.++.....+....+++-. ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 367899999887765522221 2345677888864 455 55667788999999876544443333221 135
Q ss_pred eEeeecCCCCCEEEEeeCCCcEEEEecccCC-eeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccc
Q 019847 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSN-NVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKS 181 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 181 (335)
.++.|++ .+..++++..+|.+.+-+..... +..+..+.|+-+.+...|+. +.+++.+|+.|+.+..||+|.+. ...
T Consensus 125 lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i 202 (339)
T KOG0280|consen 125 LSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFI 202 (339)
T ss_pred eEEEeec-cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-cee
Confidence 5778988 88889999999999855543222 22346888999999999987 56799999999999999999543 233
Q ss_pred eeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC-CCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCC
Q 019847 182 LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ-KGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDG 260 (335)
Q Consensus 182 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (335)
.+..+-|...|.++.-+|..+..+++|+ .|..|++||.+ -++++..-...+.|..+.++|.-...+.+ +..-
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGs--YDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~-----~CMh 275 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGS--YDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLA-----ACMH 275 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEec--cccceeeeehhcccCccccCccccceEEEEecchhhhHHHH-----HHHh
Confidence 3445668899999999998888999987 99999999999 46788777778899999999976522211 1223
Q ss_pred CeEEEEECCCC--c---eeecccCCCCceeEeEEcCCCCEEEEEe-CCCcEE-EEecCCC
Q 019847 261 NKLCLWKYPNM--T---KVGELQSSNSRILDLSQSPDGLTVATAG-ADETIR-FWEAFGP 313 (335)
Q Consensus 261 ~~i~i~d~~~~--~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~-iw~~~~~ 313 (335)
+-.+|-+.... + .....+.|.+-...-.|.....+|+|++ .|..++ +|-.-++
T Consensus 276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 44555554432 2 3344566777677777755556788875 466654 7755443
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.2e-14 Score=114.85 Aligned_cols=199 Identities=17% Similarity=0.281 Sum_probs=150.9
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE---
Q 019847 63 SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC--- 139 (335)
Q Consensus 63 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--- 139 (335)
.++++.-..-|..++....|+-++++.|+.+..+....+.++++..++ ...+|++|+.+|.|..||.+....+...
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecc
Confidence 344443223344444455799999999999999998889999999999 8889999999999999999865543221
Q ss_pred --eecCCC-----CEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCC-cEEEEecCC
Q 019847 140 --IKAHSG-----EVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQV-NVLATGGGR 211 (335)
Q Consensus 140 --~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~g~ 211 (335)
...|.+ .|+++.|+.+|-.+++|+.+|.+.|||++.... .+..-.+..-+|..+.|.+.+. .-+++.
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~kdh~~e~pi~~l~~~~~~~q~~v~S~--- 291 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVKDHGYELPIKKLDWQDTDQQNKVVSM--- 291 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeecccCCccceeeecccccCCCceEEec---
Confidence 122333 499999999999999999999999999997432 2222233456789999977632 244443
Q ss_pred CCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 212 EDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 212 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
....++|||-.+|+....++....+..+++-|++..++++ .++..+..|-+....+
T Consensus 292 Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~A------ne~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 292 DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTA------NESSKMHTYYIPSLGP 347 (703)
T ss_pred chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEe------cCCCcceeEEccccCC
Confidence 5788999999999999999998899999999999888877 5577777776655433
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-11 Score=101.40 Aligned_cols=250 Identities=11% Similarity=0.150 Sum_probs=164.4
Q ss_pred cceeeeecC--CceEEEec----CCeEEEEEecC--CceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCC
Q 019847 18 YSKVIDWGR--NNVLAVAL----GPVLFLWKWEN--GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAE 88 (335)
Q Consensus 18 ~~~~~~~~~--~~~~~~~~----~~~i~vw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~ 88 (335)
....+++++ +.++++.. ++.|..|++.. +++..+-+..........++++|++++|+++. .+|.|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 344566655 45666654 46999999886 45555444443445667899999999999987 48999999998
Q ss_pred C-ceeEee---ec----------ccccceeEeeecCCCCCEEEEee-CCCcEEEEecccCCe-ee---EEeecCCCCEEE
Q 019847 89 T-SKLVRN---LE----------GHHRRVATSSWNHWNGHILTSGS-KDKSIINHDVRVSNN-VT---SCIKAHSGEVCG 149 (335)
Q Consensus 89 ~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~-~~---~~~~~~~~~i~~ 149 (335)
. +.+... +. .......++.++| +++++++.. ....|.+|++..... +. ..........+.
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 6 433322 11 1234577899999 877776654 445899999976552 21 112234566889
Q ss_pred EEeecCCCEEEEEe-CCCeEEEEEccCCC-cccceeeccC------CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEEC
Q 019847 150 LKWSNEGNLLASGG-DDNVVRIWERSKMS-SSKSLHRFTD------HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV 221 (335)
Q Consensus 150 ~~~~~~~~~l~~~~-~dg~i~iwd~~~~~-~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 221 (335)
++|+|+++++.+.. .++.|.++++.... ....++.... .......+.++|++++++++.. ..+.|.+|++
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr--~~~sI~vf~~ 274 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR--GSNSISVFDL 274 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC--TTTEEEEEEE
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec--cCCEEEEEEE
Confidence 99999999876655 46789999988211 2222222211 1125778999999999988876 6889999999
Q ss_pred C--CCc--eEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEEC--CCCceee
Q 019847 222 Q--KGT--CIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY--PNMTKVG 275 (335)
Q Consensus 222 ~--~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~--~~~~~~~ 275 (335)
. +++ .+..+.. ......+.++|+|++++++. ..++.|.+|++ .++.+..
T Consensus 275 d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~-----~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 275 DPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVAN-----QDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp CTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEE-----TTTTEEEEEEEETTTTEEEE
T ss_pred ecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEe-----cCCCeEEEEEEeCCCCcEEE
Confidence 3 333 3344444 34589999999999998764 57889999976 4555443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=122.77 Aligned_cols=288 Identities=15% Similarity=0.222 Sum_probs=199.1
Q ss_pred cccceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCC--CCEEEEEECCCcEEEEeCCC--
Q 019847 16 DYYSKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHD--AKTLAVGYMDSKLQLWDAET-- 89 (335)
Q Consensus 16 ~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~~-- 89 (335)
+..+.+++.++ ..++.++.- .+.+.|++..-..+..-..-..-.|-...|+|. -.+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~-gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQ-GLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhc-CeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 33444555555 334444433 466777764322222111111234667788874 34556666666788998853
Q ss_pred -ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeE
Q 019847 90 -SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVV 168 (335)
Q Consensus 90 -~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (335)
......+.+|...|+.+-|+|.....+++++.|-.+..||++...........-......++|+.....+.+.+....|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 3344456789999999999999999999999999999999998877777666666777889999854445555667789
Q ss_pred EEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc--eEEEeecCCcEeEEEeCCCCc
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT--CIHGIDAKAQICGLEWNRHHK 246 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~ 246 (335)
++||++.+. .++..+++|...|+.+.|...-...+.+++ .|++++.||..+.. ..+......++..-.+.|-|+
T Consensus 183 ~vwd~r~gs--~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~--~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 183 FVWDLRKGS--TPLCSLKGHVSSVNSIDFNRFKYSEIMSSS--NDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred EEEeccCCC--cceEEecccceeeehHHHhhhhhhhhcccC--CCCceeeecccccccccceeccccCcceeccccccCc
Confidence 999999864 467778889999999999876555555555 89999999987653 334455566777777888776
Q ss_pred eeeeeeeeeeecCCCeEEEEECC----------CCceeecccCCCCceeEeEEcCCC----------CEEEEEeCCCcEE
Q 019847 247 EILSGHGFSASGDGNKLCLWKYP----------NMTKVGELQSSNSRILDLSQSPDG----------LTVATAGADETIR 306 (335)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~i~d~~----------~~~~~~~~~~~~~~i~~~~~~~~~----------~~l~~~~~dg~v~ 306 (335)
-...... -.++.+.+++.+ ..+++.++.+|...|....|-..+ -.|+|-+.|..++
T Consensus 259 g~~~mp~----~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 259 GYCIMPM----VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred eeEeccc----cCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 5543311 113345554433 256788999999988877775432 3699999999999
Q ss_pred EEecCC
Q 019847 307 FWEAFG 312 (335)
Q Consensus 307 iw~~~~ 312 (335)
+|.+.+
T Consensus 335 lWpI~~ 340 (1081)
T KOG0309|consen 335 LWPIDS 340 (1081)
T ss_pred eeeccH
Confidence 998875
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-12 Score=111.72 Aligned_cols=238 Identities=15% Similarity=0.110 Sum_probs=143.7
Q ss_pred cEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeC-CC--cEEEEecccCCeeeEEeecCCCCEEEEEeecCCC
Q 019847 81 KLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK-DK--SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (335)
.|.++|....+. +.+......+....|+| +++.|+..+. ++ .|.++|+.+++. ..+....+.....+|+|||+
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~ 274 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGK 274 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCC
Confidence 567778654433 44555677889999999 8887776543 33 588889876553 22222333445789999999
Q ss_pred EEEE-EeCCCe--EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC
Q 019847 158 LLAS-GGDDNV--VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA 234 (335)
Q Consensus 158 ~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~ 234 (335)
.|+. .+.+|. |+++|+.+.. ...+..+........|+|+++.++.+........|+++|+.+++.........
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~----~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~ 350 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKA----LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE 350 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC
Confidence 8875 455664 7777876532 33334444556778999999888777641122457777888776543322222
Q ss_pred cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeC-CCc--EEEEecC
Q 019847 235 QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA-DET--IRFWEAF 311 (335)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--v~iw~~~ 311 (335)
......|+|+|+.++.... ......|.++|+.+++... +.... ......|+|||+.|+..+. +|. +.+++..
T Consensus 351 ~~~~~~~SpDG~~l~~~~~---~~g~~~I~~~dl~~g~~~~-lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 351 QNLGGSITPDGRSMIMVNR---TNGKFNIARQDLETGAMQV-LTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CCcCeeECCCCCEEEEEEe---cCCceEEEEEECCCCCeEE-ccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 3345789999998876421 0112356667887776532 22221 1234589999998876654 343 6666764
Q ss_pred CCCCCCCccccccccccceec
Q 019847 312 GPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 312 ~~~~~~~~~~~~~~i~~~~~~ 332 (335)
+.. ......+.+.+....++
T Consensus 426 G~~-~~~l~~~~g~~~~p~Ws 445 (448)
T PRK04792 426 GRF-KARLPAGQGEVKSPAWS 445 (448)
T ss_pred CCc-eEECcCCCCCcCCCccC
Confidence 432 22232333334444443
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-12 Score=103.07 Aligned_cols=224 Identities=13% Similarity=0.155 Sum_probs=152.7
Q ss_pred cccceeeeecCCceEEEecCCeEEEEEecCCceeeEE-eecCC---C-----CCceEEE-EcC-CCCEEEEEECCCcEEE
Q 019847 16 DYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLL-QVPGE---D-----DYPTSVS-WSH-DAKTLAVGYMDSKLQL 84 (335)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~-~~~~~---~-----~~v~~~~-~~~-~~~~l~~~~~dg~i~i 84 (335)
++++.-+. +++..++.+..|.|++||.++.++.++- .++-. . .+..-+. |++ +|++++..+ .|...|
T Consensus 268 dYY~R~~n-sDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi 345 (668)
T COG4946 268 DYYPRNAN-SDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFI 345 (668)
T ss_pred hccccccC-CCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEE
Confidence 44444443 3345666778899999999887754321 11110 0 1111111 444 788888886 577888
Q ss_pred EeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCC-cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEe
Q 019847 85 WDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK-SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGG 163 (335)
Q Consensus 85 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 163 (335)
.+...+-.++ + ++...|.-..+.. +++-++.|..|| .+-++|.++++ .+.+...-+.|.++..+|+|++++++.
T Consensus 346 ~~~~~~~~iq-v-~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~I~av~vs~dGK~~vvaN 420 (668)
T COG4946 346 MRPWDGYSIQ-V-GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGNIEAVKVSPDGKKVVVAN 420 (668)
T ss_pred ECCCCCeeEE-c-CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce--EEEeeCCccceEEEEEcCCCcEEEEEc
Confidence 8766554443 2 3566788888877 777899999999 89999998554 344556778899999999999999999
Q ss_pred CCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEec-CCCCCeEEEEECCCCceEEEeecCCcEeEEEeC
Q 019847 164 DDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG-GREDGCIKIWNVQKGTCIHGIDAKAQICGLEWN 242 (335)
Q Consensus 164 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 242 (335)
....+.+.|+.++.. ...-+...+-|+.+.|+|++.+++.+-- |.....|+++|+.+++..........-.+-+|.
T Consensus 421 dr~el~vididngnv---~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD 497 (668)
T COG4946 421 DRFELWVIDIDNGNV---RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFD 497 (668)
T ss_pred CceEEEEEEecCCCe---eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccC
Confidence 889999999987543 2222335567999999999976655431 223457999999988776655544444556677
Q ss_pred CCCceee
Q 019847 243 RHHKEIL 249 (335)
Q Consensus 243 ~~~~~~~ 249 (335)
|++++|.
T Consensus 498 ~d~ryLY 504 (668)
T COG4946 498 PDGRYLY 504 (668)
T ss_pred CCCcEEE
Confidence 7776654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.8e-12 Score=101.12 Aligned_cols=230 Identities=13% Similarity=0.126 Sum_probs=154.0
Q ss_pred cCCeEEEEEecCCceeeEEeecCC-----CCCceEEEEcCCCCEEEEEE-C-CCcEEEEeCCCceeEeeecccccceeEe
Q 019847 34 LGPVLFLWKWENGKVKKLLQVPGE-----DDYPTSVSWSHDAKTLAVGY-M-DSKLQLWDAETSKLVRNLEGHHRRVATS 106 (335)
Q Consensus 34 ~~~~i~vw~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 106 (335)
.+..|.+||..+.+....+.++.. ......++++|||++|++.. . +..|.+.|+.+++.+.++... ++..-.
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy 153 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIF 153 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEE
Confidence 468999999999998777765422 22345789999999999876 3 689999999999999988742 222222
Q ss_pred eecCCCCCEEEEeeCCCcEEEEecccCCeeeE-E---eec-----CCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCC
Q 019847 107 SWNHWNGHILTSGSKDKSIINHDVRVSNNVTS-C---IKA-----HSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 107 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~---~~~-----~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 176 (335)
..++ .. +..-+.||......+........ . +.. ...+ .|.+ +++++.+..+ |.|.+.|+...
T Consensus 154 ~t~e-~~--~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~ 225 (352)
T TIGR02658 154 PTAN-DT--FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSG 225 (352)
T ss_pred EecC-Cc--cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCC
Confidence 2222 22 22334566555554443332111 0 101 0112 3456 7887777665 99999996542
Q ss_pred Cc--ccceeeccC-------CCCCeeEEEecCCCCcEEEEecC-------CCCCeEEEEECCCCceEEEeecCCcEeEEE
Q 019847 177 SS--SKSLHRFTD-------HCGGVKALAWSPHQVNVLATGGG-------REDGCIKIWNVQKGTCIHGIDAKAQICGLE 240 (335)
Q Consensus 177 ~~--~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~g-------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 240 (335)
.. ...+..+.. ..+...-++++|+++++++...+ ...+.|.++|..+++.+..+.....+..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~ia 305 (352)
T TIGR02658 226 DAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSIN 305 (352)
T ss_pred cceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEE
Confidence 21 111221111 23334459999999988885311 012689999999999999999999999999
Q ss_pred eCCCCc-eeeeeeeeeeecCCCeEEEEECCCCceeecc
Q 019847 241 WNRHHK-EILSGHGFSASGDGNKLCLWKYPNMTKVGEL 277 (335)
Q Consensus 241 ~~~~~~-~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 277 (335)
++|+++ .+++. ...++.|.++|..+++.+.++
T Consensus 306 vS~Dgkp~lyvt-----n~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 306 VSQDAKPLLYAL-----STGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ECCCCCeEEEEe-----CCCCCcEEEEECcCCeEEeee
Confidence 999999 66544 246888999999999998887
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-12 Score=104.68 Aligned_cols=282 Identities=16% Similarity=0.200 Sum_probs=182.8
Q ss_pred ccccceeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC--------------
Q 019847 15 EDYYSKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD-------------- 79 (335)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------- 79 (335)
.+.++...+|+|. .+++...-..|.+|.-..... +..+. ...|..+.|+|.++||.+=+..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~--l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAK--LVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhh--eeeee--cCCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 5677888999994 566666677899999776653 33332 2458999999999999985432
Q ss_pred -CcEEEEeCCCceeEeeecccccc--ee-EeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee-cCCCCEEEEEeec
Q 019847 80 -SKLQLWDAETSKLVRNLEGHHRR--VA-TSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK-AHSGEVCGLKWSN 154 (335)
Q Consensus 80 -g~i~iw~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~ 154 (335)
..+.+||..+|..+..+.....+ .+ -+.|+. ++.+++-- ....+.++++ +.......+. -....|....|+|
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP 183 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP 183 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence 35999999999999988766555 44 567776 55554433 3445777775 2211000000 0123344444444
Q ss_pred CC--CEEEE-----EeCCCeEEEE-----------------------------------------------------Ecc
Q 019847 155 EG--NLLAS-----GGDDNVVRIW-----------------------------------------------------ERS 174 (335)
Q Consensus 155 ~~--~~l~~-----~~~dg~i~iw-----------------------------------------------------d~~ 174 (335)
.+ ..||. ...++.+++| +++
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 21 12222 1223344444 333
Q ss_pred CCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeee
Q 019847 175 KMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGF 254 (335)
Q Consensus 175 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (335)
.. .+.......++|...+|.|.+..+.++. |..+-.+.++|++.. +...-....-..+.|+|.+++++...
T Consensus 264 e~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~-g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~ag-- 334 (561)
T COG5354 264 ER----SIPVEKDLKDPVHDFTWEPLSSRFAVIS-GYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAG-- 334 (561)
T ss_pred cc----ccceeccccccceeeeecccCCceeEEe-cccccceeecccccc--eEEecCCcccccccccCcccEEEEec--
Confidence 11 1111123578899999999998777766 668999999999865 44444455667788999999987631
Q ss_pred eeecCCCeEEEEECCCCceee-cccCCCCceeEeEEcCCCCEEEEEe------CCCcEEEEecCCCCC
Q 019847 255 SASGDGNKLCLWKYPNMTKVG-ELQSSNSRILDLSQSPDGLTVATAG------ADETIRFWEAFGPSG 315 (335)
Q Consensus 255 ~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~v~iw~~~~~~~ 315 (335)
.+...|.+.+||......+. .+.+.. .+-+.|+||++++.+.. .|..+.||++.+.+.
T Consensus 335 -F~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 335 -FDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred -CCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 12446899999987765544 555543 34467999999998774 478899999987643
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-12 Score=104.96 Aligned_cols=287 Identities=16% Similarity=0.253 Sum_probs=188.3
Q ss_pred ceeeeecCC--ceEEEec-----------CCeEEEEEecCCceeeEEeecCCCCC-ceEEEEcCCCCEEEEEECCCcEEE
Q 019847 19 SKVIDWGRN--NVLAVAL-----------GPVLFLWKWENGKVKKLLQVPGEDDY-PTSVSWSHDAKTLAVGYMDSKLQL 84 (335)
Q Consensus 19 ~~~~~~~~~--~~~~~~~-----------~~~i~vw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~i 84 (335)
+..++|+|+ ++++.+. ...+.|||+.+|...+.+........ -.-..||.|++|+|.-..+ .|.|
T Consensus 252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisI 330 (698)
T KOG2314|consen 252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISI 330 (698)
T ss_pred ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEE
Confidence 556788885 4554442 25899999999998776665322222 2346899999999988765 6999
Q ss_pred EeCCCceeEeeecccccceeEeeecCCCCCEEEEeeC-----CCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEE
Q 019847 85 WDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK-----DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159 (335)
Q Consensus 85 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 159 (335)
|+..+..++..-.-.-..|....|+| .+++||-=.. -..+.+..+.+.+. ++...-|.-.=..+.|..+|.+|
T Consensus 331 yEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~-iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 331 YETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKRE-IRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccce-eeeccceeeeccEEEeccCCcEE
Confidence 99887665554444557899999999 7777764321 12455555554443 22222233333457788888888
Q ss_pred EEEeC-------C---CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC-C---c
Q 019847 160 ASGGD-------D---NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK-G---T 225 (335)
Q Consensus 160 ~~~~~-------d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~---~ 225 (335)
+.--. . ..+.|+.++.... ++... .-...|...+|-|.|..+.+..+.....++.+|-+++ . +
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdI--pve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~ 485 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDI--PVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS 485 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCC--Cceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence 76321 1 2355666665332 22222 2457789999999999888877644557888998873 2 2
Q ss_pred eEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeC----
Q 019847 226 CIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA---- 301 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---- 301 (335)
.+..++. ...+.+.|+|.|++++.+.. .+..|.+.++|+........-.......+.+.|.|.|+|+++++.
T Consensus 486 lVk~~dk-~~~N~vfwsPkG~fvvva~l---~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrh 561 (698)
T KOG2314|consen 486 LVKELDK-KFANTVFWSPKGRFVVVAAL---VSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRH 561 (698)
T ss_pred hhhhhcc-cccceEEEcCCCcEEEEEEe---cccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhh
Confidence 2333332 56788999999999988742 247899999998753332222222234688999999999999874
Q ss_pred --CCcEEEEecCCCCC
Q 019847 302 --DETIRFWEAFGPSG 315 (335)
Q Consensus 302 --dg~v~iw~~~~~~~ 315 (335)
|.--++|++.+...
T Consensus 562 k~d~GYri~tfqGrll 577 (698)
T KOG2314|consen 562 KVDNGYRIFTFQGRLL 577 (698)
T ss_pred ccccceEEEEeecHHH
Confidence 55567888876543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-12 Score=110.14 Aligned_cols=226 Identities=17% Similarity=0.164 Sum_probs=139.0
Q ss_pred CcEEEEeCCCceeEeeecccccceeEeeecCCCCCE---EEEeeCCC--cEEEEecccCCeeeEEeecCCCCEEEEEeec
Q 019847 80 SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHI---LTSGSKDK--SIINHDVRVSNNVTSCIKAHSGEVCGLKWSN 154 (335)
Q Consensus 80 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~ 154 (335)
..|.+.|...++. +.+.........-.|+| +++. +++...+| .|.+.++..+.. ..+....+.....+|+|
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSP 240 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSP 240 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECC
Confidence 3677777765443 44554556677889999 7753 33555554 577778775542 23334555666789999
Q ss_pred CCCEEEEEeC-CC----eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe--EEEEECCC-Cce
Q 019847 155 EGNLLASGGD-DN----VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC--IKIWNVQK-GTC 226 (335)
Q Consensus 155 ~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~--i~i~d~~~-~~~ 226 (335)
||+.|+..+. +| .+..|++......................+|+|||+.++.+.. .+|. |+++++.. +..
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~--~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSN--KDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEEC--CCCCceEEEEECcccccc
Confidence 9998887653 22 3444676543212222222222234467899999988887764 4564 44445532 222
Q ss_pred EEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeC---C
Q 019847 227 IHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA---D 302 (335)
Q Consensus 227 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d 302 (335)
...+.. ...+....|+|+|+.++.... ......|.+||+.+++.... ......+....|+|||+.|+.... .
T Consensus 319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~---~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~~L~f~~~~~g~ 394 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPDGKKIAFCSV---IKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSLHLVYSAGNSNE 394 (428)
T ss_pred eEEeccCCCCccceeECCCCCEEEEEEc---CCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCCEEEEEECCCCC
Confidence 333332 345678899999998876421 11235799999988876433 323345678999999998875432 3
Q ss_pred CcEEEEecCCCCC
Q 019847 303 ETIRFWEAFGPSG 315 (335)
Q Consensus 303 g~v~iw~~~~~~~ 315 (335)
..|.++++.+++.
T Consensus 395 ~~L~~vdl~~g~~ 407 (428)
T PRK01029 395 SELYLISLITKKT 407 (428)
T ss_pred ceEEEEECCCCCE
Confidence 4688888877654
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.2e-13 Score=109.38 Aligned_cols=187 Identities=16% Similarity=0.226 Sum_probs=150.8
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecCC-CCCceEEEEc------C--------------CCCEEEEEECCCcEEEEe
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPGE-DDYPTSVSWS------H--------------DAKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~-~~~v~~~~~~------~--------------~~~~l~~~~~dg~i~iw~ 86 (335)
.++....||.+++|+...++....+.-..| .+..++..|. | +...++-|...|.|.+|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 455567899999999998887554433222 2334444442 1 344778888999999999
Q ss_pred CCCceeEeeec--ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC
Q 019847 87 AETSKLVRNLE--GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD 164 (335)
Q Consensus 87 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (335)
+..++....+. .|.+.|.++.++. +-..|.+++.|+.+..|+.... ...+........+.+++.+||+..+++++
T Consensus 87 ~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~sl~is~D~~~l~~as- 163 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEK-VIIRIWKEQKPLVSSLCISPDGKILLTAS- 163 (541)
T ss_pred ecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccc-eeeeeeccCCCccceEEEcCCCCEEEecc-
Confidence 99999888876 6889999999988 8889999999999999999744 45777788888999999999999999887
Q ss_pred CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCC-----CCcEEEEecCCCCCeEEEEECCC
Q 019847 165 DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH-----QVNVLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 165 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~g~~d~~i~i~d~~~ 223 (335)
+.|++||+++ .+.+..|.+|.++|+++.|..+ |.+++++.. .+..+.+|-.+.
T Consensus 164 -~~ik~~~~~~---kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~--~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 -RQIKVLDIET---KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA--AERGITVWVVEK 221 (541)
T ss_pred -ceEEEEEccC---ceEEEEecCCCcceEEEEEEEeccccccceeeeccc--cccceeEEEEEc
Confidence 6899999887 5679999999999999999877 778888776 677788887654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.6e-13 Score=112.68 Aligned_cols=281 Identities=16% Similarity=0.248 Sum_probs=198.0
Q ss_pred CCcccccceeeeecCC--ceEEEecCCeEEEEEecCCce-------------eeEEeecCCCCCceEEEEcCCCCEEEEE
Q 019847 12 YLMEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKV-------------KKLLQVPGEDDYPTSVSWSHDAKTLAVG 76 (335)
Q Consensus 12 ~~~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 76 (335)
.+|......|++|+.+ .+++++.||.+++..+.+... .--.++.||+..|.-+.|+.+.+.|-++
T Consensus 10 ~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS 89 (1189)
T KOG2041|consen 10 GIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS 89 (1189)
T ss_pred CCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence 5677788899999984 566677999999998875321 1123567999999999999999999999
Q ss_pred ECCCcEEEEeCCCceeEeeec--ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec
Q 019847 77 YMDSKLQLWDAETSKLVRNLE--GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN 154 (335)
Q Consensus 77 ~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~ 154 (335)
..+|.|.+|-+-.|....++. ...+.|.+++|+. +|..+.....||.|.+=.++..+.--+.+.+ .....+.|++
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~ 166 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSE 166 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecc
Confidence 999999999998887655543 2456799999999 9999999999999988776633221111211 2234688999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcccc--------eeeccCCCCCeeEEEec--------CCCCcEEEEecCCCCCeEEE
Q 019847 155 EGNLLASGGDDNVVRIWERSKMSSSKS--------LHRFTDHCGGVKALAWS--------PHQVNVLATGGGREDGCIKI 218 (335)
Q Consensus 155 ~~~~l~~~~~dg~i~iwd~~~~~~~~~--------~~~~~~~~~~v~~~~~~--------~~~~~~~~~~~g~~d~~i~i 218 (335)
|.+.++.+-..|.+.+||....-..+. ...+......|..+.|. |+.+.++++. .+|.+.+
T Consensus 167 D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy---~nGr~Qi 243 (1189)
T KOG2041|consen 167 DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY---ANGRMQI 243 (1189)
T ss_pred cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE---cCceehh
Confidence 999888888899999999653211110 00111122235556663 4666565554 6899998
Q ss_pred EECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeee---cCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCE
Q 019847 219 WNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSAS---GDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLT 295 (335)
Q Consensus 219 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 295 (335)
..-.+...-..+..+-.+....|+++|..++++..-... .+.+.|++|. .-|+.+.+++.....|++++|-..|-.
T Consensus 244 MR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLr 322 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLR 322 (1189)
T ss_pred hhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceE
Confidence 877766666666667789999999999999875321100 1124566665 457788888888888999999776655
Q ss_pred EEEE
Q 019847 296 VATA 299 (335)
Q Consensus 296 l~~~ 299 (335)
++.+
T Consensus 323 iA~A 326 (1189)
T KOG2041|consen 323 IAIA 326 (1189)
T ss_pred EEEE
Confidence 5443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5e-13 Score=117.08 Aligned_cols=266 Identities=14% Similarity=0.232 Sum_probs=178.8
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEe----ecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccce
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQ----VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRV 103 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v 103 (335)
.++.++....|.+||+..+..+..+. .+.|...-.- .-.+.+++++..-+.+..=+... +.... -...+
T Consensus 18 ~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~---~l~~~~~v~~~~~~~v~~~~~~~-~~~~~---~s~wi 90 (967)
T KOG0974|consen 18 DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKV---KLLSGKIVTCAKSDEVYVKEASN-QIIER---FSDWI 90 (967)
T ss_pred ceeeecCCCceEEeeCCchhHhhhhhhhcccccccccccc---eeccceEEEEEeecceeecchhh-hhhhh---ccccc
Confidence 45666677899999999886543322 1233000000 01233555555444444333221 11111 22333
Q ss_pred eEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCC---EEEEEeecCCCEEEEEeCCCeEEEEEccCCCccc
Q 019847 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGE---VCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSK 180 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 180 (335)
....+.. +...++.++.++.+.+||................. ..-+.++++.-++++|+.-+.|.+|+....+ .
T Consensus 91 ~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn--~ 167 (967)
T KOG0974|consen 91 FGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN--K 167 (967)
T ss_pred cccchhh-hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC--C
Confidence 3344444 77888899999999999987554333322111111 1123346677799999999999999987322 2
Q ss_pred ceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEE--EeecCCcEeEEEeCCCCceeeeeeeeeeec
Q 019847 181 SLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIH--GIDAKAQICGLEWNRHHKEILSGHGFSASG 258 (335)
Q Consensus 181 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (335)
+. .+.+|.+.|.++.++.+|.+++. .+ +|.++|+|++++.+... -+.+...+..+.+.|+ .++++ +
T Consensus 168 p~-~l~GHeG~iF~i~~s~dg~~i~s-~S--dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~------g 235 (967)
T KOG0974|consen 168 PI-RLKGHEGSIFSIVTSLDGRYIAS-VS--DDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITV------G 235 (967)
T ss_pred cc-eecccCCceEEEEEccCCcEEEE-Ee--cCcceeeeecccccccCcccccccceeEEEEeccc--eeEEe------c
Confidence 22 67899999999999999965555 44 89999999999987765 4556778999999999 66665 8
Q ss_pred CCCeEEEEECCCCceeecccCCCC-ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 019847 259 DGNKLCLWKYPNMTKVGELQSSNS-RILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 259 ~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
+|.+.++|+. +++.+..+..|.. .|..++..++...++|++.||.+++|++......
T Consensus 236 edctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 236 EDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE 293 (967)
T ss_pred cceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence 8999999975 4455557777765 6899999999999999999999999998875443
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-14 Score=129.62 Aligned_cols=194 Identities=18% Similarity=0.323 Sum_probs=154.1
Q ss_pred ceeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 19 SKVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 19 ~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
+.++.-++ ..+++++.||.|++|....++....++..+. ..|+.+.|+.+|+.+..+..||.+.+|... .++....
T Consensus 2211 v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~ 2288 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSW 2288 (2439)
T ss_pred eeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC-Ccceecc
Confidence 34444454 4788999999999999999888777776665 899999999999999999999999999987 6777788
Q ss_pred cccccceeEeeecCCCCCEEEEee---CCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGS---KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
+.|........|.. ..+++++ .++.+.+||..........-..|.+.++++++.|..+.|++|+.+|.|++||+
T Consensus 2289 qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~ 2365 (2439)
T KOG1064|consen 2289 QCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDI 2365 (2439)
T ss_pred ccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeeh
Confidence 88999999999953 6677764 56899999975443322233689999999999999999999999999999998
Q ss_pred cCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC
Q 019847 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK 233 (335)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~ 233 (335)
+.. +.++.++. ++ .+..+++++ ..|.++||++.....++.++..
T Consensus 2366 rqr---ql~h~~~~---------~~--~~~~f~~~s--s~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2366 RQR---QLRHTFQA---------LD--TREYFVTGS--SEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred HHH---HHHHHhhh---------hh--hhheeeccC--cccceEEEEccccchhhcCchh
Confidence 863 33444432 33 234666765 8999999999988877777653
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-12 Score=99.00 Aligned_cols=243 Identities=12% Similarity=0.252 Sum_probs=161.0
Q ss_pred ccccceeeeecC--CceEEEecCCeEEEEEecCCc---eeeEEeecCC------------CCCceEEEEcCCCC--EEEE
Q 019847 15 EDYYSKVIDWGR--NNVLAVALGPVLFLWKWENGK---VKKLLQVPGE------------DDYPTSVSWSHDAK--TLAV 75 (335)
Q Consensus 15 ~~~~~~~~~~~~--~~~~~~~~~~~i~vw~~~~~~---~~~~~~~~~~------------~~~v~~~~~~~~~~--~l~~ 75 (335)
..-.+.++.|.. +.++++..+|.|.++.-+... ..-...++.| ...|..+.|.++++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 334466677764 566677789999999754322 1112222333 25688999998654 5666
Q ss_pred EECCCcEEEEeCCCceeE-----------------------------------eee-cccccceeEeeecCCCCCEEEEe
Q 019847 76 GYMDSKLQLWDAETSKLV-----------------------------------RNL-EGHHRRVATSSWNHWNGHILTSG 119 (335)
Q Consensus 76 ~~~dg~i~iw~~~~~~~~-----------------------------------~~~-~~~~~~v~~~~~~~~~~~~l~~~ 119 (335)
.+.|.+|++|.+...... +.+ ..|.-.|.++.++. +...++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeec
Confidence 778999999987532110 011 24777899999987 77777765
Q ss_pred eCCCcEEEEecccCCeeeEEe--ecC-----CCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcc----cce-----
Q 019847 120 SKDKSIINHDVRVSNNVTSCI--KAH-----SGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSS----KSL----- 182 (335)
Q Consensus 120 ~~dg~i~~~d~~~~~~~~~~~--~~~-----~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~----~~~----- 182 (335)
.|=.|.+|+++-..+...+. +++ ..-|++..|+| ..+.++-.+..|+|++-|+|....- +..
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 47789999987554433222 222 23478889999 5678888999999999999842110 000
Q ss_pred ----eeccCCCCCeeEEEecCCCCcEEEEecCCCC-CeEEEEEC-CCCceEEEeecCC----------------cEeEEE
Q 019847 183 ----HRFTDHCGGVKALAWSPHQVNVLATGGGRED-GCIKIWNV-QKGTCIHGIDAKA----------------QICGLE 240 (335)
Q Consensus 183 ----~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d-~~i~i~d~-~~~~~~~~~~~~~----------------~~~~~~ 240 (335)
.-+..--..|..+.|+++|.++++ .| -+|++||+ ...+++.+++.+. .-..++
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryils-----RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~ 336 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILS-----RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECS 336 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEE-----eccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence 111112345888999999987776 34 89999999 5566666665432 234578
Q ss_pred eCCCCceeeeeeeeeeecCCCeEEEEECCC
Q 019847 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
|+.++..+++| +-.+.+++|+...
T Consensus 337 ~sg~~~~v~TG------sy~n~frvf~~~~ 360 (433)
T KOG1354|consen 337 WSGNDSYVMTG------SYNNVFRVFNLAR 360 (433)
T ss_pred EcCCcceEecc------cccceEEEecCCC
Confidence 99999999998 5588888888544
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-13 Score=118.60 Aligned_cols=189 Identities=19% Similarity=0.304 Sum_probs=148.3
Q ss_pred eeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCC-----ceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 22 IDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDY-----PTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 22 ~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
+.|.+..++.++.++.+.+||...+...... . +... ..-+-++++.-++++|+.-+.|.+|+....+....+
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i--~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l 171 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKI--Q-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRL 171 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceehhc--C-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCccee
Confidence 3445567888889999999998877643222 1 2221 122334667779999999999999998744444468
Q ss_pred cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCC
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 176 (335)
.+|.+.|.++.|+. ++.++++.++|.++++|++++.+.......+|...+..+.|.|+ .+++++.|.+.++|+.+.
T Consensus 172 ~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~- 247 (967)
T KOG0974|consen 172 KGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG- 247 (967)
T ss_pred cccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc-
Confidence 89999999999999 99999999999999999999888766677789999999999998 899999999999997553
Q ss_pred CcccceeeccCCCC-CeeEEEecCCCCcEEEEecCCCCCeEEEEECCC
Q 019847 177 SSSKSLHRFTDHCG-GVKALAWSPHQVNVLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 177 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 223 (335)
..+..+..|.. .+..++..++.. +..+++ .|+.+++||+..
T Consensus 248 ---~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g--~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 248 ---TQLEVYDEHSGKGIWKIAVPIGVI-IKVTGG--NDSTLKLWDLNG 289 (967)
T ss_pred ---ceehhhhhhhhcceeEEEEcCCce-EEEeec--cCcchhhhhhhc
Confidence 33456666754 588888888764 566665 899999999753
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-12 Score=97.73 Aligned_cols=189 Identities=18% Similarity=0.226 Sum_probs=135.9
Q ss_pred EEEecCCeEEEEEecCCceeeEE-eecCCC---CCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee--Eeeecccccce
Q 019847 30 LAVALGPVLFLWKWENGKVKKLL-QVPGED---DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL--VRNLEGHHRRV 103 (335)
Q Consensus 30 ~~~~~~~~i~vw~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~v 103 (335)
+-+-..|.|.++..+..+....+ .+..-. ....++.|++.+..++++-.+|.+.+-+.....+ ++.++.|.-+.
T Consensus 89 ~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~ 168 (339)
T KOG0280|consen 89 LDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEA 168 (339)
T ss_pred eeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceee
Confidence 33446778888876543321111 111111 1245788999999999999999999666555544 44889999999
Q ss_pred eEeeecCCCCCEEEEeeCCCcEEEEecccCCe-eeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccc
Q 019847 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSNN-VTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKS 181 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 181 (335)
+...|+..+++++++|+.|+.+..||++..+. +.+..+-|...|.+|.-+| .+.++++|+.|-.|++||.|+.. ++
T Consensus 169 Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~--kP 246 (339)
T KOG0280|consen 169 WTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG--KP 246 (339)
T ss_pred eeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc--Cc
Confidence 99999998899999999999999999994443 3333556889999999887 68899999999999999999653 33
Q ss_pred eeeccCCCCCeeEEEecCCCCc-EEEEecCCCCCeEEEEECCCC
Q 019847 182 LHRFTDHCGGVKALAWSPHQVN-VLATGGGREDGCIKIWNVQKG 224 (335)
Q Consensus 182 ~~~~~~~~~~v~~~~~~~~~~~-~~~~~~g~~d~~i~i~d~~~~ 224 (335)
+..- .-.+.|..++++|.-.. +++++ .-+-.++-+.+.+
T Consensus 247 l~~~-~v~GGVWRi~~~p~~~~~lL~~C---Mh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 247 LFKA-KVGGGVWRIKHHPEIFHRLLAAC---MHNGAKILDSSDK 286 (339)
T ss_pred cccC-ccccceEEEEecchhhhHHHHHH---HhcCceEEEeccc
Confidence 3322 23478999999997543 33433 4555677776654
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-11 Score=101.22 Aligned_cols=191 Identities=16% Similarity=0.231 Sum_probs=145.9
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCceeEeeeccc---ccceeEeeec------C-------------CCCCEEEEeeCCCc
Q 019847 67 SHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH---HRRVATSSWN------H-------------WNGHILTSGSKDKS 124 (335)
Q Consensus 67 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~~~v~~~~~~------~-------------~~~~~l~~~~~dg~ 124 (335)
.|...|+|....||.+++|+..+++....+... .+..++..|. | .+...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 345678999999999999999999887776532 2333344442 1 13457888899999
Q ss_pred EEEEecccCCeeeEEe-ecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCc
Q 019847 125 IINHDVRVSNNVTSCI-KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203 (335)
Q Consensus 125 i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 203 (335)
|.+|+...++...... ..|.+.|.++.++.+-..|.+++.|+.+..|+... ...+..+...+..+.+++.+||+..
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~---~~~~~~~~~~~~~~~sl~is~D~~~ 158 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE---KVIIRIWKEQKPLVSSLCISPDGKI 158 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc---ceeeeeeccCCCccceEEEcCCCCE
Confidence 9999998555433322 46999999999999999999999999999999665 4557777777888999999999864
Q ss_pred EEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCC-----CceeeeeeeeeeecCCCeEEEEECCC
Q 019847 204 VLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRH-----HKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 204 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
++ ++ .+.|++||+++++.+..+.++ +++.++.|... |.+++++. ..+..+.+|-...
T Consensus 159 l~-~a----s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa-----~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 159 LL-TA----SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSA-----AAERGITVWVVEK 221 (541)
T ss_pred EE-ec----cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecc-----ccccceeEEEEEc
Confidence 44 43 589999999999999999976 58889988877 77777653 3355666675543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-10 Score=97.96 Aligned_cols=270 Identities=10% Similarity=0.010 Sum_probs=163.9
Q ss_pred ecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccce
Q 019847 24 WGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRV 103 (335)
Q Consensus 24 ~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v 103 (335)
..++.+++++.++.+..+|..+|+..-...+... ...... .++..+++++.+|.+..+|.++|+.+..........
T Consensus 63 v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~--~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ 138 (377)
T TIGR03300 63 VAGGKVYAADADGTVVALDAETGKRLWRVDLDER--LSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVL 138 (377)
T ss_pred EECCEEEEECCCCeEEEEEccCCcEeeeecCCCC--cccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceee
Confidence 3456788888889999999999987655554332 111222 256788888899999999999999887765332211
Q ss_pred eEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCE-----EEEEeecCCCEEEEEeCCCeEEEEEccCCCc
Q 019847 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEV-----CGLKWSNEGNLLASGGDDNVVRIWERSKMSS 178 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 178 (335)
..... .+..++.++.+|.+..+|.++++..-+.. ...... .+... .+..++.+..+|.+..+|.+++..
T Consensus 139 ~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 139 SPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYS-RVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQP 212 (377)
T ss_pred cCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEc-cCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCE
Confidence 11122 34567778889999999998776543321 111111 01111 124677888889999999876543
Q ss_pred ccceeeccCCC-CC------e-eEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeee
Q 019847 179 SKSLHRFTDHC-GG------V-KALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS 250 (335)
Q Consensus 179 ~~~~~~~~~~~-~~------v-~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (335)
.-......... .. + ....+ .+..+++.+ .+|.++.+|.++++.+...+... ..... ..+..++.
T Consensus 213 ~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~---~~g~l~a~d~~tG~~~W~~~~~~-~~~p~--~~~~~vyv 284 (377)
T TIGR03300 213 LWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVS---YQGRVAALDLRSGRVLWKRDASS-YQGPA--VDDNRLYV 284 (377)
T ss_pred eeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEE---cCCEEEEEECCCCcEEEeeccCC-ccCce--EeCCEEEE
Confidence 21111000000 00 0 11111 133455544 68999999999998876665322 11111 12334433
Q ss_pred eeeeeeecCCCeEEEEECCCCceeecccCCCC-ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc
Q 019847 251 GHGFSASGDGNKLCLWKYPNMTKVGELQSSNS-RILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 319 (335)
+ +.+|.+..+|..+++.+........ ....... .+..|++++.||.++++|..+++.....
T Consensus 285 ~------~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 285 T------DADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARL 346 (377)
T ss_pred E------CCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 3 6799999999999988765532211 1222222 3568889999999999998877655433
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-12 Score=100.00 Aligned_cols=243 Identities=17% Similarity=0.287 Sum_probs=171.7
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce-----eEeeecccc------------cceeEeeecC-CCCCEEEEe
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK-----LVRNLEGHH------------RRVATSSWNH-WNGHILTSG 119 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~-~~~~~l~~~ 119 (335)
.+.|+++.|...|.||++|...|.|.+|.-+... ...+++.|. ..|..+.|.. .....++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 5679999999999999999988999999765432 222344443 4678888865 234567788
Q ss_pred eCCCcEEEEecccCC-------------------e----------------------eeEE-eecCCCCEEEEEeecCCC
Q 019847 120 SKDKSIINHDVRVSN-------------------N----------------------VTSC-IKAHSGEVCGLKWSNEGN 157 (335)
Q Consensus 120 ~~dg~i~~~d~~~~~-------------------~----------------------~~~~-~~~~~~~i~~~~~~~~~~ 157 (335)
+.|.+|++|.+.... . +.+. ...|.-.|.++.++.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 899999999885431 0 0011 134667788999999888
Q ss_pred EEEEEeCCCeEEEEEccCCCcccceeeccCCC-----CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceE-----
Q 019847 158 LLASGGDDNVVRIWERSKMSSSKSLHRFTDHC-----GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI----- 227 (335)
Q Consensus 158 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~----- 227 (335)
.++++. |-.|.+|++......-.+-.+++|. .-|++..|+|....++.-++ ..|.|++-|++....-
T Consensus 186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs--SkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS--SKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec--CCCcEEehhhhhhhhccCchh
Confidence 887765 7889999987665544455555553 34788999998877777666 7999999999853221
Q ss_pred -EE--ee---------cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC-CceeecccCCC------------C
Q 019847 228 -HG--ID---------AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN-MTKVGELQSSN------------S 282 (335)
Q Consensus 228 -~~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~------------~ 282 (335)
.. +. .-..|..+.|+++|+++++- +-.++++||++. ..++.++.-|. .
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR-------dyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnD 335 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR-------DYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEND 335 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe-------ccceEEEEecccccCCceeechHHHHHHHHHhhhhcc
Confidence 11 11 12358889999999999875 357899999976 45566665442 2
Q ss_pred ce---eEeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 283 RI---LDLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 283 ~i---~~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
.| ..+.||.|...+++|+.....-+|-.
T Consensus 336 aifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred ceeeeEEEEecCCcccccccccccceeeecc
Confidence 23 34678889889999988777777763
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-10 Score=107.98 Aligned_cols=242 Identities=7% Similarity=0.080 Sum_probs=158.0
Q ss_pred eEEEEcCC-CCEEEEEECCCcEEEEeCCCceeEeeecc-c-------------ccceeEeeecCCCCCEEEEe-eCCCcE
Q 019847 62 TSVSWSHD-AKTLAVGYMDSKLQLWDAETSKLVRNLEG-H-------------HRRVATSSWNHWNGHILTSG-SKDKSI 125 (335)
Q Consensus 62 ~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~~l~~~-~~dg~i 125 (335)
..+++++. +..+++-..++.|+++|.. ++.+..+.. . -.....+++.+ +++.|+++ ..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 46888875 5566666678899999976 444433322 1 12357888988 66655554 456789
Q ss_pred EEEecccCCeeeEEeecC-----------------CCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccc-----e
Q 019847 126 INHDVRVSNNVTSCIKAH-----------------SGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKS-----L 182 (335)
Q Consensus 126 ~~~d~~~~~~~~~~~~~~-----------------~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~ 182 (335)
+.+|..++. ...+.+. -.....++++| ++.++++.+.++.|++||......... .
T Consensus 649 r~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 999986543 2222110 11236799999 566677777789999999765321000 0
Q ss_pred eeccC------CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee--------------c--------CC
Q 019847 183 HRFTD------HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID--------------A--------KA 234 (335)
Q Consensus 183 ~~~~~------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--------------~--------~~ 234 (335)
....+ .-.....++++|++..++++.+ .++.|++||+.++....... . -.
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEEC--CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 00000 1123567999999987888776 78999999998765321110 0 01
Q ss_pred cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecc-------------cCCCCceeEeEEcCCCCEEEEEeC
Q 019847 235 QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL-------------QSSNSRILDLSQSPDGLTVATAGA 301 (335)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~l~~~~~ 301 (335)
....++++++|..+++- ..++.|++||..++...... .+.-.....++++++|+++++-+.
T Consensus 805 ~P~Gvavd~dG~LYVAD------s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVAD------SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred CCceeeEeCCCcEEEEE------CCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 24578889998755544 66899999999876654221 112234678999999998888889
Q ss_pred CCcEEEEecCCCCC
Q 019847 302 DETIRFWEAFGPSG 315 (335)
Q Consensus 302 dg~v~iw~~~~~~~ 315 (335)
++.|++||+.....
T Consensus 879 Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 879 NSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEEECCCCcc
Confidence 99999999987654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-10 Score=104.74 Aligned_cols=288 Identities=17% Similarity=0.207 Sum_probs=179.4
Q ss_pred ccceeeeecC--CceEEEecCCeEEEE----EecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC--
Q 019847 17 YYSKVIDWGR--NNVLAVALGPVLFLW----KWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE-- 88 (335)
Q Consensus 17 ~~~~~~~~~~--~~~~~~~~~~~i~vw----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~-- 88 (335)
..+.++.+-. +.++++..+|.|.+. +..+.+....-.+ ...|.+++||||+..|+..+.++++.+-.-.
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 3455566554 467788899999999 6666665444443 5679999999999999999999988876421
Q ss_pred -------------C--------ceeEeeecc------------------------cccceeEeeecCCCCCEEEEeeC--
Q 019847 89 -------------T--------SKLVRNLEG------------------------HHRRVATSSWNHWNGHILTSGSK-- 121 (335)
Q Consensus 89 -------------~--------~~~~~~~~~------------------------~~~~v~~~~~~~~~~~~l~~~~~-- 121 (335)
. |+....|++ ....-..++|.. ||.++++.+.
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~ 231 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEP 231 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEc
Confidence 0 111111111 223456788988 9999998874
Q ss_pred -C---CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC---CCeEEEEEccCCCcccceeeccCCCCCeeE
Q 019847 122 -D---KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD---DNVVRIWERSKMSSSKSLHRFTDHCGGVKA 194 (335)
Q Consensus 122 -d---g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 194 (335)
. ..+++|+-+ + .+...-..-.+--.+++|.|.|+++|+.-. ...|.+|.-+....+.-...+......|..
T Consensus 232 ~~~~~R~iRVy~Re-G-~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-G-ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred CCCceeEEEEECCC-c-eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence 2 478999865 2 233333333344467899999999998765 346777775543322222222345667999
Q ss_pred EEecCCCCcEEEEecCCCCCeEEEEECCCCceE--EEee--cCCcEeEEEeCCCCcee-eeee----------eeeee-c
Q 019847 195 LAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI--HGID--AKAQICGLEWNRHHKEI-LSGH----------GFSAS-G 258 (335)
Q Consensus 195 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~-~~~~----------~~~~~-~ 258 (335)
+.|++++..|++.. ...|.+|-..+..-. +.+. ....+..+.|+|....- .... .+.+. +
T Consensus 310 l~Wn~ds~iLAv~~----~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s 385 (928)
T PF04762_consen 310 LAWNSDSEILAVWL----EDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS 385 (928)
T ss_pred EEECCCCCEEEEEe----cCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEec
Confidence 99999997554443 444999998876432 2222 23445568899865442 2210 01010 0
Q ss_pred ------CCCeEEEEECCCCce--e--eccc--------CCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 259 ------DGNKLCLWKYPNMTK--V--GELQ--------SSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 259 ------~~~~i~i~d~~~~~~--~--~~~~--------~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
+.+.+.+.|-.+-.. . ..++ ....+|.+++|++++..+++-..||.+.+|......
T Consensus 386 ~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 386 PGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred CCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 223444444322110 0 0011 124579999999999889999999999999966543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-10 Score=98.51 Aligned_cols=258 Identities=13% Similarity=0.052 Sum_probs=157.8
Q ss_pred ecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccce
Q 019847 24 WGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRV 103 (335)
Q Consensus 24 ~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v 103 (335)
..++.+++++.++.++.+|.++|+..-...+.+ .+.+.-.. .+..++.++.+|.+..+|.++|+.+.++.......
T Consensus 103 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~ 178 (377)
T TIGR03300 103 ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS---EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPAL 178 (377)
T ss_pred EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc---eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCce
Confidence 345677888889999999999998765444322 12111111 35577778889999999999999887765432211
Q ss_pred -----eEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCC---C---EEEEEeec--CCCEEEEEeCCCeEEE
Q 019847 104 -----ATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSG---E---VCGLKWSN--EGNLLASGGDDNVVRI 170 (335)
Q Consensus 104 -----~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~---~---i~~~~~~~--~~~~l~~~~~dg~i~i 170 (335)
.+... .+..++.+..+|.+..+|.++++........... . ...+.-+| .+..+++++.+|.++.
T Consensus 179 ~~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a 255 (377)
T TIGR03300 179 TLRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAA 255 (377)
T ss_pred eecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEE
Confidence 11112 2346778888999999999877654322111100 0 00111112 3457788888999999
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCc-EeEEEeCCCCcee
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQ-ICGLEWNRHHKEI 248 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~ 248 (335)
+|.++++. +.... . ........ .+..+++.. .+|.+..+|..+++.+...+. ... ...... .+..+
T Consensus 256 ~d~~tG~~---~W~~~-~-~~~~~p~~--~~~~vyv~~---~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l 323 (377)
T TIGR03300 256 LDLRSGRV---LWKRD-A-SSYQGPAV--DDNRLYVTD---ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYL 323 (377)
T ss_pred EECCCCcE---EEeec-c-CCccCceE--eCCEEEEEC---CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEE
Confidence 99876532 22222 1 11112222 344555543 699999999999988766532 211 111111 23344
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceeecccCCCCcee-EeEEcCCCCEEEEEeCCCcEEEE
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRIL-DLSQSPDGLTVATAGADETIRFW 308 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~v~iw 308 (335)
+++ +.+|.++++|..+++.+.+++.+...+. +..+. ++ .|+.++.||.|..+
T Consensus 324 ~~~------~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 324 VVG------DFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEE------eCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 443 7799999999999999988876664432 22332 33 58889999998876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-12 Score=120.37 Aligned_cols=221 Identities=13% Similarity=0.191 Sum_probs=168.0
Q ss_pred EEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEe
Q 019847 73 LAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKW 152 (335)
Q Consensus 73 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~ 152 (335)
+.....++...-|..+.+.. .++.+-..|.++.-+| ...+.++|+.||.+++|....+..+..........|+.+.|
T Consensus 2183 ~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f 2259 (2439)
T KOG1064|consen 2183 FTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRF 2259 (2439)
T ss_pred CCcccCCccccceeccccee--EeecccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhh
Confidence 33333344444454332222 2233456788888888 78889999999999999998777766555555688999999
Q ss_pred ecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC--ceEEEe
Q 019847 153 SNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG--TCIHGI 230 (335)
Q Consensus 153 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~ 230 (335)
+.+|+.+..+..||.+.+|.+. .++....+.|......+.|-. ..++..+..+.++.+.+||.-.. ..+...
T Consensus 2260 ~~qGnk~~i~d~dg~l~l~q~~----pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~ 2333 (2439)
T KOG1064|consen 2260 NHQGNKFGIVDGDGDLSLWQAS----PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHT 2333 (2439)
T ss_pred cccCCceeeeccCCceeecccC----CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeee
Confidence 9999999999999999999976 456777788888888888876 23555554457789999996432 222224
Q ss_pred ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 231 DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
-+.+..+++++-|....+++| +.+|.|++||++..+++++++. +. ...++++|+..|.++||++
T Consensus 2334 ~H~~gaT~l~~~P~~qllisg------gr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2334 CHDGGATVLAYAPKHQLLISG------GRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred ecCCCceEEEEcCcceEEEec------CCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEc
Confidence 456789999999999999988 8899999999999998887765 34 4568999999999999999
Q ss_pred CCCCCCCC
Q 019847 311 FGPSGDED 318 (335)
Q Consensus 311 ~~~~~~~~ 318 (335)
........
T Consensus 2398 s~~~ll~~ 2405 (2439)
T KOG1064|consen 2398 SEFGLLHT 2405 (2439)
T ss_pred cccchhhc
Confidence 98755443
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-11 Score=103.88 Aligned_cols=294 Identities=12% Similarity=0.135 Sum_probs=199.0
Q ss_pred CCCcccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCC------------CEEEEEEC
Q 019847 11 PYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDA------------KTLAVGYM 78 (335)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~ 78 (335)
|..++.-.-.+++|++..+++.++...|.+-|..+-+.++. ++-|+..|+.+.|.|.. -+||++..
T Consensus 10 pG~l~~sN~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqs--ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~ 87 (1062)
T KOG1912|consen 10 PGPLSRSNRNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQS--IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI 87 (1062)
T ss_pred CCCCCcccccccccCccceEEEecCceEEEEehhhhhhhhc--cccCccceeEEEeccCCCchhccCccccceeEEeccc
Confidence 44444445788999999999999999999999888776554 45688999999998731 25677788
Q ss_pred CCcEEEEeCCCceeEeeecccccceeEeeecCC--CC-CEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-
Q 019847 79 DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW--NG-HILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN- 154 (335)
Q Consensus 79 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~--~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~- 154 (335)
.|.|.+||...+..+..+..+..++..++|-+. +. +.|++-....++.+|+..+++...+.-. ......|+.+.|
T Consensus 88 ~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y-s~~iLs~f~~DPf 166 (1062)
T KOG1912|consen 88 SGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY-SHEILSCFRVDPF 166 (1062)
T ss_pred cCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc-CCcceeeeeeCCC
Confidence 899999999999999999999999999999663 22 5777778888999999998887655332 334567799999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCC----cccceeeccCCCC----------------C---------eeEEEecCCCCcEE
Q 019847 155 EGNLLASGGDDNVVRIWERSKMS----SSKSLHRFTDHCG----------------G---------VKALAWSPHQVNVL 205 (335)
Q Consensus 155 ~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~----------------~---------v~~~~~~~~~~~~~ 205 (335)
|.+.+..-+..|.+.+-+.-... ..+.++.-..|.+ . ...++|+|.-++++
T Consensus 167 d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 167 DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 77888887888888777643211 1122222222211 0 12356788776666
Q ss_pred EEecCCCCCeEEEEECCCCceEEEeecCC-cEeEEEeCCCC--ceeeeeeeeeeecCCCeEEEEECCCCceeec------
Q 019847 206 ATGGGREDGCIKIWNVQKGTCIHGIDAKA-QICGLEWNRHH--KEILSGHGFSASGDGNKLCLWKYPNMTKVGE------ 276 (335)
Q Consensus 206 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~------ 276 (335)
... ....+.++|++-..++.....+. .+.-+.+-|++ ..+++. -.+|.+.+|-.+......+
T Consensus 247 fi~---~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lfcl------H~nG~ltirvrk~~~~~f~~~~~~l 317 (1062)
T KOG1912|consen 247 FIT---FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCL------HSNGRLTIRVRKEEPTEFKKPNASL 317 (1062)
T ss_pred EEE---eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEE------ecCCeEEEEEeeccCccccccchhh
Confidence 655 58899999999888888776543 33444555554 455555 4599999997654211111
Q ss_pred ----------ccCC-CCceeEeEEcCC-CCEEEEEeCCCcEEEEecCCCCCC
Q 019847 277 ----------LQSS-NSRILDLSQSPD-GLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 277 ----------~~~~-~~~i~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
+..- +..+......|. ...++.--.+|.+.+|.+.+++..
T Consensus 318 ~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 318 SMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH 369 (1062)
T ss_pred ccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence 1110 111222333343 334444456788899999875443
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.4e-10 Score=86.94 Aligned_cols=229 Identities=13% Similarity=0.168 Sum_probs=155.2
Q ss_pred CCcEEEEeCCCc--ee-EeeecccccceeEeeecCCCCCEEEEeeCC---CcEEEEecccC-Ceee--EEeecCCCCEEE
Q 019847 79 DSKLQLWDAETS--KL-VRNLEGHHRRVATSSWNHWNGHILTSGSKD---KSIINHDVRVS-NNVT--SCIKAHSGEVCG 149 (335)
Q Consensus 79 dg~i~iw~~~~~--~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~-~~~~--~~~~~~~~~i~~ 149 (335)
+.-|++|++.+. +. ...+-.....++-++|+| +.+.|.++..+ |.|..|.++.. ..+. ........+-+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 467999998743 21 112224667899999999 88888887654 77888888743 2211 111122334488
Q ss_pred EEeecCCCEEEEEeC-CCeEEEEEccCCCcccceeeccCCCCC----------eeEEEecCCCCcEEEEecCCCCCeEEE
Q 019847 150 LKWSNEGNLLASGGD-DNVVRIWERSKMSSSKSLHRFTDHCGG----------VKALAWSPHQVNVLATGGGREDGCIKI 218 (335)
Q Consensus 150 ~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~~~~~~g~~d~~i~i 218 (335)
+++++++++++++.. -|.|.++-++.............|.++ +....+.|++++++++.- ---.|.+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL--G~Dri~~ 171 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL--GTDRIFL 171 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec--CCceEEE
Confidence 999999999988864 578999998764333333222334444 778899999988888765 3457999
Q ss_pred EECCCCceEE----EeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC-ceeecccCC---------CCce
Q 019847 219 WNVQKGTCIH----GIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM-TKVGELQSS---------NSRI 284 (335)
Q Consensus 219 ~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~---------~~~i 284 (335)
|++..|+... .++.+.....+.|+|++++..... .-+++|.+|..... ..+..++.+ ....
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~-----EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~ 246 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVN-----ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA 246 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEe-----ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence 9999776532 234456788999999999886653 55899999998773 233333221 2346
Q ss_pred eEeEEcCCCCEEEEEeC-CCcEEEEecCCCCC
Q 019847 285 LDLSQSPDGLTVATAGA-DETIRFWEAFGPSG 315 (335)
Q Consensus 285 ~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~ 315 (335)
.+|.+++||++|.++.. ...|-+|.+.....
T Consensus 247 aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g 278 (346)
T COG2706 247 AAIHISPDGRFLYASNRGHDSIAVFSVDPDGG 278 (346)
T ss_pred eEEEECCCCCEEEEecCCCCeEEEEEEcCCCC
Confidence 78899999999988753 23677777766544
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-10 Score=95.00 Aligned_cols=282 Identities=15% Similarity=0.178 Sum_probs=183.1
Q ss_pred cccceeeeecC-CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC-----------CCcEE
Q 019847 16 DYYSKVIDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM-----------DSKLQ 83 (335)
Q Consensus 16 ~~~~~~~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~ 83 (335)
...-+.+.|+| +.+++.-....|.+|--++-...+.+ .|. .|.-+.|||+.+||++-+. ...++
T Consensus 210 nWTetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF---~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 210 NWTETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRF---YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred cceeeeEEecCCceEEEEEeccceeeecCccHHHHHhc---cCC-CceeeecCCccceEEEecCCccccCcccCCCceEE
Confidence 44556789999 45666666778999975544433322 343 4889999999999999652 25799
Q ss_pred EEeCCCceeEeeeccc--cccee-EeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEE
Q 019847 84 LWDAETSKLVRNLEGH--HRRVA-TSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLA 160 (335)
Q Consensus 84 iw~~~~~~~~~~~~~~--~~~v~-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 160 (335)
|||+.+|.+.+.+... ...+. -..||. +++++|.-.. ..|.+|+...-. +.....-....|....|+|.+++||
T Consensus 286 IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~-lld~Kslki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFM-LLDKKSLKISGIRDFSWSPTSNLLA 362 (698)
T ss_pred EEEccccchhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCcee-eecccccCCccccCcccCCCcceEE
Confidence 9999999998888752 22332 357888 8888887665 678899876422 2222222346788999999988887
Q ss_pred EEeCC-----CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC-------CCCCeEEEEECCCC-ceE
Q 019847 161 SGGDD-----NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG-------REDGCIKIWNVQKG-TCI 227 (335)
Q Consensus 161 ~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g-------~~d~~i~i~d~~~~-~~~ 227 (335)
.=... ..+.+-.+-+ .+.+++..-++-.=..+-|-.+|++|.+-.-. ..-..+.|+.++.. -++
T Consensus 363 Ywtpe~~~~parvtL~evPs---~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv 439 (698)
T KOG2314|consen 363 YWTPETNNIPARVTLMEVPS---KREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV 439 (698)
T ss_pred EEcccccCCcceEEEEecCc---cceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc
Confidence 64422 2344444333 22233322232222346677777655443210 01224556666543 346
Q ss_pred EEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC----CceeecccCCCCceeEeEEcCCCCEEEEEe---
Q 019847 228 HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN----MTKVGELQSSNSRILDLSQSPDGLTVATAG--- 300 (335)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--- 300 (335)
..++....+...+|-|.|..+++-.+ .....++.+|.+.+ .+++..+.. ...+.+.|+|.|++++.+.
T Consensus 440 e~velke~vi~FaWEP~gdkF~vi~g---~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s 514 (698)
T KOG2314|consen 440 EVVELKESVIAFAWEPHGDKFAVISG---NTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVS 514 (698)
T ss_pred eeeecchheeeeeeccCCCeEEEEEc---cccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecc
Confidence 66777889999999999998876432 23467889998873 233344433 3467899999999998774
Q ss_pred CCCcEEEEecCC
Q 019847 301 ADETIRFWEAFG 312 (335)
Q Consensus 301 ~dg~v~iw~~~~ 312 (335)
..|.+.++|...
T Consensus 515 ~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 515 RRGDLEFYDTDY 526 (698)
T ss_pred cccceEEEecch
Confidence 578999999985
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.2e-11 Score=96.95 Aligned_cols=257 Identities=18% Similarity=0.216 Sum_probs=167.8
Q ss_pred eeeecCCceEE-EecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCC--CEEEE-----EECCCcEEEEeCCCcee
Q 019847 21 VIDWGRNNVLA-VALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDA--KTLAV-----GYMDSKLQLWDAETSKL 92 (335)
Q Consensus 21 ~~~~~~~~~~~-~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-----~~~dg~i~iw~~~~~~~ 92 (335)
+..|+.+..++ --..+.+.+|+....+.. .. .-|...|+.+.++|.+ ..+|+ .+.-+.++||.......
T Consensus 130 ~~qfs~dEsl~arlv~nev~f~~~~~f~~~-~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 130 VPQFSIDESLAARLVSNEVQFYDLGSFKTI-QH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred ccccccchhhhhhhhcceEEEEecCCccce-ee--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 46667654443 346789999998874422 12 2357779999999863 34444 24456899998763222
Q ss_pred Eeeec---ccccceeEeeecCCCCCEEEEeeC--C---------CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCE
Q 019847 93 VRNLE---GHHRRVATSSWNHWNGHILTSGSK--D---------KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNL 158 (335)
Q Consensus 93 ~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~--d---------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 158 (335)
-..+. -....-..+.|++....+|+.++. | .++++.+++ +.. ...-....++|.++.|+|+++.
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s-~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GES-VSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-Cce-EEEecCCCCCceEEEECCCCCE
Confidence 11111 112233457787744444444432 2 367777776 333 2222345899999999999987
Q ss_pred EEEE--eCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcE
Q 019847 159 LASG--GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQI 236 (335)
Q Consensus 159 l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~ 236 (335)
++++ -.--++.|||++. ..+..+ ..++-+++-|+|.|..++.+|-|...|.+.+||..+.+++..++... .
T Consensus 285 F~VvyGfMPAkvtifnlr~----~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-t 357 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRG----KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-T 357 (566)
T ss_pred EEEEEecccceEEEEcCCC----CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-c
Confidence 7664 4556899999874 344444 46778899999999988888878888999999999988887776543 4
Q ss_pred eEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcC
Q 019847 237 CGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSP 291 (335)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 291 (335)
+-+.|+|+|++++++..-.--.-|+.++||++. |..+....-.. ....+.|-|
T Consensus 358 t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~s-EL~qv~W~P 410 (566)
T KOG2315|consen 358 TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKS-ELLQVEWRP 410 (566)
T ss_pred eEEEEcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhH-hHhheeeee
Confidence 568999999999987431112348999999974 44443321111 455666665
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.1e-10 Score=89.64 Aligned_cols=147 Identities=13% Similarity=0.193 Sum_probs=118.1
Q ss_pred eeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCC-cEEEEeCCCceeEeeecccc
Q 019847 22 IDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDS-KLQLWDAETSKLVRNLEGHH 100 (335)
Q Consensus 22 ~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~ 100 (335)
++..++.+++.-+.|...+.+...+-..+ + +|...|.-..+..+++-++.|..|| .+-|+|..+++. +.+...-
T Consensus 327 fa~~~Gd~ia~VSRGkaFi~~~~~~~~iq---v-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~l 401 (668)
T COG4946 327 FAVVNGDYIALVSRGKAFIMRPWDGYSIQ---V-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDL 401 (668)
T ss_pred hccCCCcEEEEEecCcEEEECCCCCeeEE---c-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCc
Confidence 44456677777778888888876665433 2 4667788888988888999999999 899999987764 4455567
Q ss_pred cceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC----eEEEEEccC
Q 019847 101 RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN----VVRIWERSK 175 (335)
Q Consensus 101 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~ 175 (335)
+.|.++..++ +++.++.+.....+.+.|+.++.. ...-+...+-|+.+.|+|+++++|-+--+| .|+++|+..
T Consensus 402 g~I~av~vs~-dGK~~vvaNdr~el~vididngnv-~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 402 GNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNV-RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred cceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCe-eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 8999999999 999999999999999999997764 444455678899999999999999987665 588998765
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-09 Score=90.81 Aligned_cols=216 Identities=11% Similarity=0.059 Sum_probs=132.6
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCE-EEEEEC---CCcEEEEeCCCceeEeeecccccceeEeeecCC
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKT-LAVGYM---DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW 111 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 111 (335)
..|.+-|.+.... +.+.. + . ......|+|||+. ++..+. +..|.++|+.+++...... ..+......|+|
T Consensus 169 ~~l~~~d~dg~~~-~~~~~-~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP- 242 (419)
T PRK04043 169 SNIVLADYTLTYQ-KVIVK-G-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK- 242 (419)
T ss_pred ceEEEECCCCCce-eEEcc-C-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-
Confidence 3566666655443 22222 2 2 6778999999985 655443 3569999998886554433 455566788999
Q ss_pred CCCEE-EEeeCC--CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC-C--eEEEEEccCCCcccceeec
Q 019847 112 NGHIL-TSGSKD--KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD-N--VVRIWERSKMSSSKSLHRF 185 (335)
Q Consensus 112 ~~~~l-~~~~~d--g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~ 185 (335)
+++.+ ++.+.+ ..|.++|+..+. ...+..+........|+|||+.|+..+.. + .|++.|+..+...+ +. .
T Consensus 243 DG~~la~~~~~~g~~~Iy~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-lt-~ 318 (419)
T PRK04043 243 DGSKLLLTMAPKGQPDIYLYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-VV-F 318 (419)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-Cc-c
Confidence 77655 444444 467777876544 23333344334456899999988777643 3 57777876543211 11 1
Q ss_pred cCCCCCeeEEEecCCCCcEEEEecCCCC--------CeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeee
Q 019847 186 TDHCGGVKALAWSPHQVNVLATGGGRED--------GCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSAS 257 (335)
Q Consensus 186 ~~~~~~v~~~~~~~~~~~~~~~~~g~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (335)
.+. ....|+|+|+.++.+.. .. ..|.+.|+.+++.. .+..........|+|+|+.++.... .
T Consensus 319 ~g~----~~~~~SPDG~~Ia~~~~--~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SPDG~~I~f~~~---~ 388 (419)
T PRK04043 319 HGK----NNSSVSTYKNYIVYSSR--ETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSSDGGSIMFIKY---L 388 (419)
T ss_pred CCC----cCceECCCCCEEEEEEc--CCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECCCCCEEEEEEc---c
Confidence 111 12489999998888764 22 47888999887653 3433333446889999998875421 1
Q ss_pred cCCCeEEEEECCCC
Q 019847 258 GDGNKLCLWKYPNM 271 (335)
Q Consensus 258 ~~~~~i~i~d~~~~ 271 (335)
+....+.+.++...
T Consensus 389 ~~~~~L~~~~l~g~ 402 (419)
T PRK04043 389 GNQSALGIIRLNYN 402 (419)
T ss_pred CCcEEEEEEecCCC
Confidence 22344666776543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-09 Score=99.41 Aligned_cols=240 Identities=10% Similarity=0.098 Sum_probs=151.9
Q ss_pred eeeecC--CceEEE-ecCCeEEEEEecCCceeeEEeecC------------CCCCceEEEEcCCCCEEEEEE-CCCcEEE
Q 019847 21 VIDWGR--NNVLAV-ALGPVLFLWKWENGKVKKLLQVPG------------EDDYPTSVSWSHDAKTLAVGY-MDSKLQL 84 (335)
Q Consensus 21 ~~~~~~--~~~~~~-~~~~~i~vw~~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~-~dg~i~i 84 (335)
.++++. +.++++ ..++.|+++|..... ...+...+ .-.....++++++++.|+++. .++.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 355543 444444 467889999976443 22221111 113468899999888766654 4578999
Q ss_pred EeCCCceeEeeeccc-----------------ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeec-----
Q 019847 85 WDAETSKLVRNLEGH-----------------HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA----- 142 (335)
Q Consensus 85 w~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~----- 142 (335)
+|+.++.. ..+.+. -.....++++|.++.++++...++.|++||..++... .+.+
T Consensus 651 id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~--~~~G~G~~~ 727 (1057)
T PLN02919 651 IDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR--VFSGDGYER 727 (1057)
T ss_pred EecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE--EEecCCccc
Confidence 99877643 332110 1234678999856677778788899999998754321 1111
Q ss_pred ----------CCCCEEEEEeecCCCEE-EEEeCCCeEEEEEccCCCcccc----------eeeccCC--------CCCee
Q 019847 143 ----------HSGEVCGLKWSNEGNLL-ASGGDDNVVRIWERSKMSSSKS----------LHRFTDH--------CGGVK 193 (335)
Q Consensus 143 ----------~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~----------~~~~~~~--------~~~v~ 193 (335)
.-.....++++|+++.| ++-+.++.|++||++++..... +..+... -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 11235679999998844 4555678999999875431100 0001000 11245
Q ss_pred EEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC--------------CcEeEEEeCCCCceeeeeeeeeeecC
Q 019847 194 ALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK--------------AQICGLEWNRHHKEILSGHGFSASGD 259 (335)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (335)
.++++++|. ++++.. .++.|++||..++......... .....++++++|+.+++. +.
T Consensus 808 Gvavd~dG~-LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD------t~ 878 (1057)
T PLN02919 808 GVLCAKDGQ-IYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD------TN 878 (1057)
T ss_pred eeeEeCCCc-EEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE------CC
Confidence 889999986 666655 7999999999887665433211 246789999999866554 67
Q ss_pred CCeEEEEECCCCce
Q 019847 260 GNKLCLWKYPNMTK 273 (335)
Q Consensus 260 ~~~i~i~d~~~~~~ 273 (335)
++.|++||+.+++.
T Consensus 879 Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 879 NSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEEECCCCcc
Confidence 89999999988764
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7e-10 Score=83.45 Aligned_cols=261 Identities=13% Similarity=0.025 Sum_probs=166.1
Q ss_pred ecCCeEEEEEecCCc--eeeEEeecCCCCCceEEEEcC-----CCCEEEEEECCCcEEEEeCCCcee-Eeeeccccccee
Q 019847 33 ALGPVLFLWKWENGK--VKKLLQVPGEDDYPTSVSWSH-----DAKTLAVGYMDSKLQLWDAETSKL-VRNLEGHHRRVA 104 (335)
Q Consensus 33 ~~~~~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~v~ 104 (335)
.....+-+|++-+.. ..+.. ..+.|.| ...+||.|+..|...+|...+.+. .+....+...|+
T Consensus 49 ~~t~sv~i~~~y~N~~~iv~~y---------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~ 119 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPKGIVEFY---------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVT 119 (344)
T ss_pred cceeeeEeccccCCchhhEEee---------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchh
Confidence 344567778776544 22221 2344544 445899999999999999986543 333444444443
Q ss_pred EeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCC--CEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccce
Q 019847 105 TSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSG--EVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL 182 (335)
Q Consensus 105 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 182 (335)
-+.=.......+..++.|.++++.+++.+..... .|.. .+.+++++++++++++.+....|..|.+........-
T Consensus 120 ~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~---~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~ 196 (344)
T KOG4532|consen 120 LVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA---VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN 196 (344)
T ss_pred hhhhhcccccceeeccCCcceeEEEEecCcccce---eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee
Confidence 3322221344567788888888888874432122 2332 3789999999999999999999999998865433222
Q ss_pred eeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEe------ecCCcEeEEEeCCCCceeeeeeeeee
Q 019847 183 HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI------DAKAQICGLEWNRHHKEILSGHGFSA 256 (335)
Q Consensus 183 ~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (335)
.........-.+..|+.... .++++. .||++.|||++........ .+.+.+..+.|++.|..=+ +..
T Consensus 197 ~~~a~t~D~gF~~S~s~~~~-~FAv~~--Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDL----Lf~ 269 (344)
T KOG4532|consen 197 IYEAPTSDHGFYNSFSENDL-QFAVVF--QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDL----LFI 269 (344)
T ss_pred eEecccCCCceeeeeccCcc-eEEEEe--cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceE----EEE
Confidence 23334455567788988774 666665 9999999999876443222 1356789999998664322 112
Q ss_pred ecCCCeEEEEECCCCceeecccC-------CC-CceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 257 SGDGNKLCLWKYPNMTKVGELQS-------SN-SRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 257 ~~~~~~i~i~d~~~~~~~~~~~~-------~~-~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+..-+.+.+.|++++...+.+.. |. ..|..-.|+.++..+.+.+++ .+.=|++...
T Consensus 270 sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 270 SEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred ecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeecccc
Confidence 24468899999998776544322 22 237777788877777766654 3444555443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.9e-10 Score=90.01 Aligned_cols=251 Identities=12% Similarity=0.117 Sum_probs=161.0
Q ss_pred cCCeEEEEEecCCceeeEEeecC-CCCCceEEEEcCCC--CEEEE-----EECCCcEEEEeCCCceeEeeecccccceeE
Q 019847 34 LGPVLFLWKWENGKVKKLLQVPG-EDDYPTSVSWSHDA--KTLAV-----GYMDSKLQLWDAETSKLVRNLEGHHRRVAT 105 (335)
Q Consensus 34 ~~~~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 105 (335)
....++|+++ ++...+ ..+.. ....|...+|+|.+ ..||. .+..+.+++|.+..+..+..-.-....=..
T Consensus 150 v~~sl~i~e~-t~n~~~-~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 150 VGSSLYIHEI-TDNIEE-HPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred ccCeEEEEec-CCcccc-CchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 4557888886 443321 11111 12557888999953 34444 356789999999877665544333344456
Q ss_pred eeecCCCCCEEEEee-----------CCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEe--CCCeEEEEE
Q 019847 106 SSWNHWNGHILTSGS-----------KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGG--DDNVVRIWE 172 (335)
Q Consensus 106 ~~~~~~~~~~l~~~~-----------~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd 172 (335)
+.|.+ .+++|+.-- ...++++++++.... .......++|...+|.|.++.+++.+ .+-.+.++|
T Consensus 228 LkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i--~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 228 LKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI--PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred EEEec-CCceEEEEEEEeeecccceeccceEEEEeeccccc--ceeccccccceeeeecccCCceeEEecccccceeecc
Confidence 77888 666554321 124678888873332 22225689999999999888776655 678899999
Q ss_pred ccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeee
Q 019847 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGH 252 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (335)
++.. ... ......=+.+.|+|.+.+++.+|-+...|.+.+||......+..--......-+.|+|+++++.+..
T Consensus 305 lr~N----l~~--~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ 378 (561)
T COG5354 305 LRGN----LRF--YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDT 378 (561)
T ss_pred cccc----eEE--ecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecC
Confidence 8853 122 2234455678899999998888766677899999987554443222334456678999999987763
Q ss_pred eeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCC
Q 019847 253 GFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADE 303 (335)
Q Consensus 253 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 303 (335)
.-.--..|+.+.+||+...... ..+.+.|.|.+++..+.+.+.
T Consensus 379 ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 379 TSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred CCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence 2111245889999998644332 356677777776666655543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.9e-09 Score=96.14 Aligned_cols=240 Identities=14% Similarity=0.270 Sum_probs=153.9
Q ss_pred CceEEEEcCCCCEEEEEEC---C---CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeC---CCcEEEEec
Q 019847 60 YPTSVSWSHDAKTLAVGYM---D---SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK---DKSIINHDV 130 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~---d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~ 130 (335)
.-..++|-.||+|+|+.+. . ..++||+-+ |++...-+.-.+--.+++|.| .|+++++... ...|.+|.-
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfEr 288 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFER 288 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEec
Confidence 4567889999999999874 2 479999965 666555554455566889999 9999998765 345667764
Q ss_pred ccCCeeeEE----eecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeecc-CCCCCeeEEEecCCCCcEE
Q 019847 131 RVSNNVTSC----IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFT-DHCGGVKALAWSPHQVNVL 205 (335)
Q Consensus 131 ~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~ 205 (335)
+ +-. ... +......|..+.|++++..||..-.|. |.+|-..+.. +-..+.+. .....+..+.|+|..+.-+
T Consensus 289 N-GLr-hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH-WYLKqei~~~~~~~~~~~~Wdpe~p~~L 364 (928)
T PF04762_consen 289 N-GLR-HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH-WYLKQEIRFSSSESVNFVKWDPEKPLRL 364 (928)
T ss_pred C-CcE-eeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-EEEEEEEEccCCCCCCceEECCCCCCEE
Confidence 3 221 111 123456799999999999999988665 9999876532 11112221 1233455599999877655
Q ss_pred EEecCCCCCeEEEEECC----C----------------Cce----------------EEEeecCCcEeEEEeCCCCceee
Q 019847 206 ATGGGREDGCIKIWNVQ----K----------------GTC----------------IHGIDAKAQICGLEWNRHHKEIL 249 (335)
Q Consensus 206 ~~~~g~~d~~i~i~d~~----~----------------~~~----------------~~~~~~~~~~~~~~~~~~~~~~~ 249 (335)
.... .+|.+..++.. . |.. ...+..+.++.+++|++++..++
T Consensus 365 ~v~t--~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~a 442 (928)
T PF04762_consen 365 HVLT--SNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFA 442 (928)
T ss_pred EEEe--cCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEE
Confidence 5554 44666554431 1 111 12233456789999999987655
Q ss_pred eeeeeeeecCCCeEEEEECCCCce--------eeccc----------CCCCceeEeEEcCCCCEEEEEeCC---CcEEEE
Q 019847 250 SGHGFSASGDGNKLCLWKYPNMTK--------VGELQ----------SSNSRILDLSQSPDGLTVATAGAD---ETIRFW 308 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~~~~--------~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~d---g~v~iw 308 (335)
+- ..||.+.+|....... ...+. .....+..++|..+..+++....+ ..+.++
T Consensus 443 vl------~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 516 (928)
T PF04762_consen 443 VL------TSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLV 516 (928)
T ss_pred EE------ECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEE
Confidence 54 5699999998543221 11111 123357888888888777666554 678888
Q ss_pred ecCCC
Q 019847 309 EAFGP 313 (335)
Q Consensus 309 ~~~~~ 313 (335)
++...
T Consensus 517 ~~~~~ 521 (928)
T PF04762_consen 517 DIDDS 521 (928)
T ss_pred EeccC
Confidence 87543
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.1e-09 Score=78.82 Aligned_cols=232 Identities=16% Similarity=0.212 Sum_probs=136.6
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCc--eeEeee---cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE
Q 019847 64 VSWSHDAKTLAVGYMDSKLQLWDAETS--KLVRNL---EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS 138 (335)
Q Consensus 64 ~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 138 (335)
++.+++|+.||+- .|..|.|-..++. ..+.+. +...-.=+.++|+| ++.+|+.+...|+|++||+.. ..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence 5677889877776 5667777765542 222222 22233457899999 999999999999999999974 33222
Q ss_pred Eeec------CCCCEEEEEeecC------CCEEEEEeCCCeEEEEEccC--CCcccceeecc--C-CCCCeeEEEecCCC
Q 019847 139 CIKA------HSGEVCGLKWSNE------GNLLASGGDDNVVRIWERSK--MSSSKSLHRFT--D-HCGGVKALAWSPHQ 201 (335)
Q Consensus 139 ~~~~------~~~~i~~~~~~~~------~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~--~-~~~~v~~~~~~~~~ 201 (335)
.-.. ...+|..+.|.+. ...|++-..+|.++-|-+.. .+..+..+.+. . +...|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 2111 2356777777552 12466667788888777632 22223333322 2 46789999999998
Q ss_pred CcEEEEecCCCCC----------eEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC
Q 019847 202 VNVLATGGGREDG----------CIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM 271 (335)
Q Consensus 202 ~~~~~~~~g~~d~----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~ 271 (335)
..|++.|. ... -+..|.+-++.+.... ..+.+...-. ...+..+|.+.+.
T Consensus 160 ~LLlVgG~--~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~---------v~~~~~~~~~---------~~~~~~~~~~~~~ 219 (282)
T PF15492_consen 160 RLLLVGGC--EQNQDGMSKASSCGLTAWRILSDSPYYKQ---------VTSSEDDITA---------SSKRRGLLRIPSF 219 (282)
T ss_pred CEEEEecc--CCCCCccccccccCceEEEEcCCCCcEEE---------ccccCccccc---------cccccceeeccce
Confidence 65554443 332 2333443333222111 0000000000 0112233333333
Q ss_pred ceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 272 TKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
+...........|..|..||||..||+...+|.|.+|++..-....+
T Consensus 220 ~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 220 KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence 32222233456799999999999999999999999999987655543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.6e-11 Score=101.43 Aligned_cols=230 Identities=17% Similarity=0.271 Sum_probs=158.1
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce---------------eEeeecccccceeEeeecCCCCCEEEEeeCC
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK---------------LVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 122 (335)
.....|++|+....++|+|+.||.+++..+.+.. .-+.+.+|...|.-+.|+. +...|-+...+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCCC
Confidence 3457899999999999999999999999876532 2245778999999999998 88889999999
Q ss_pred CcEEEEecccCCeeeEEeec-CCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCC
Q 019847 123 KSIINHDVRVSNNVTSCIKA-HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQ 201 (335)
Q Consensus 123 g~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 201 (335)
|.|.+|-+-.+......... ..+.|.+++|+.+|..++....||.|.+=.+....... +.++ ......+.|++|.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwg--KeLk--g~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWG--KELK--GQLLAHVLWSEDL 168 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecc--hhcc--hheccceeecccH
Confidence 99999999876654333332 45668999999999999999999988776655322110 0111 1123468899999
Q ss_pred CcEEEEecCCCCCeEEEEECCCC-------ceEEEee-----cCCcEeEEEeC--------CCCceeeeeeeeeeecCCC
Q 019847 202 VNVLATGGGREDGCIKIWNVQKG-------TCIHGID-----AKAQICGLEWN--------RHHKEILSGHGFSASGDGN 261 (335)
Q Consensus 202 ~~~~~~~~g~~d~~i~i~d~~~~-------~~~~~~~-----~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 261 (335)
+.++..- .+|.+.+||.+.. .+..... .+..+..+.|. |+...++++ -.+|
T Consensus 169 ~~~Lf~~---ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavc------y~nG 239 (1189)
T KOG2041|consen 169 EQALFKK---ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVC------YANG 239 (1189)
T ss_pred HHHHhhh---cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEE------EcCc
Confidence 7766643 6899999997643 1111111 12234445443 455555555 4577
Q ss_pred eEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC
Q 019847 262 KLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302 (335)
Q Consensus 262 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 302 (335)
.+.+..-.+......+.. .-.+....|+++|..|+.++.|
T Consensus 240 r~QiMR~eND~~Pvv~dt-gm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDT-GMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred eehhhhhcCCCCCeEEec-ccEeecceecCCCcEEEEccCc
Confidence 777765443322222221 2468889999999999999864
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-08 Score=87.00 Aligned_cols=221 Identities=10% Similarity=0.001 Sum_probs=133.7
Q ss_pred cEEEEeCCCceeEeeecccccceeEeeecCCCCCE-EEEeeC---CCcEEEEecccCCeeeEEeecCCCCEEEEEeecCC
Q 019847 81 KLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHI-LTSGSK---DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 156 (335)
.|.+-|..... .+.+... .......|+| +++. ++..+. +..|.++|+.+++. ..+....+......|+|||
T Consensus 170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred eEEEECCCCCc-eeEEccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence 56665654333 3334333 3778899999 7763 554433 34688899876553 2233456666778899999
Q ss_pred CEEEEEe-CC--CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC
Q 019847 157 NLLASGG-DD--NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK 233 (335)
Q Consensus 157 ~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~ 233 (335)
+.++... .+ ..|.++|+.... ...+..+........|+|||+.++.+........|++.|+.+++..+.....
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~----~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g 320 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKT----LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG 320 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCc----EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC
Confidence 8776543 23 468888876532 2233333333345689999998888764112237888899887764433322
Q ss_pred CcEeEEEeCCCCceeeeeeeeeeec---CCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC-C--cEEE
Q 019847 234 AQICGLEWNRHHKEILSGHGFSASG---DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD-E--TIRF 307 (335)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~v~i 307 (335)
.. ...|+|+|+.++....-.... ....|.+.|+.+++.. .+... .......|+|||+.|+..+.+ + .+.+
T Consensus 321 ~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 321 KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 22 348999999987653210000 1147888898887653 33322 223458899999988766543 3 3556
Q ss_pred EecCCCC
Q 019847 308 WEAFGPS 314 (335)
Q Consensus 308 w~~~~~~ 314 (335)
.++.+..
T Consensus 397 ~~l~g~~ 403 (419)
T PRK04043 397 IRLNYNK 403 (419)
T ss_pred EecCCCe
Confidence 6666543
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-11 Score=91.04 Aligned_cols=154 Identities=14% Similarity=0.146 Sum_probs=107.2
Q ss_pred eeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-----CCCcEEEEeCCCceeEee
Q 019847 21 VIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-----MDSKLQLWDAETSKLVRN 95 (335)
Q Consensus 21 ~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~ 95 (335)
......+++..+..||.+.+++.+.. .....+.+.-...-.+.++...++.+.++. .-+..+.|+++..+....
T Consensus 96 ~~s~~~t~V~~~~~dg~~~v~s~~~~-~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~ 174 (319)
T KOG4714|consen 96 ACTMTDNRVCIGYADGSLAVFSTDKD-LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP 174 (319)
T ss_pred cccccCCceEecCCCceEEEEechHH-HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccc
Confidence 34445567888889999999997652 111111111111223334444566665542 223566666654433222
Q ss_pred ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEcc
Q 019847 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 174 (335)
-+.....|.+++-+|...+++++|+.||.+.+||.+....+...+..|+.+++.+.|+| ++..|+++++||.+..||..
T Consensus 175 ~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 175 SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 22233459999999988889999999999999999988777788889999999999999 78899999999999999955
Q ss_pred C
Q 019847 175 K 175 (335)
Q Consensus 175 ~ 175 (335)
+
T Consensus 255 ~ 255 (319)
T KOG4714|consen 255 T 255 (319)
T ss_pred C
Confidence 3
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-11 Score=99.29 Aligned_cols=266 Identities=14% Similarity=0.226 Sum_probs=173.0
Q ss_pred cCCceEEEecCCeEEEEEecC-----CceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec--
Q 019847 25 GRNNVLAVALGPVLFLWKWEN-----GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE-- 97 (335)
Q Consensus 25 ~~~~~~~~~~~~~i~vw~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-- 97 (335)
+.+.+++++.|++|++|.++. +.....+++..|+.+|.++.|-.+.++++++ ||.|++||.--++++..+.
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~da 823 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDA 823 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcC
Confidence 346899999999999999864 2233577888999999999999998888876 8899999988887766443
Q ss_pred ccccceeEeeecCC-CCCEEEEe-eCCCcEEEEecccCCeeeE--E--eecCCCCEEEEEeecCCCEEEEEeCCCeEEEE
Q 019847 98 GHHRRVATSSWNHW-NGHILTSG-SKDKSIINHDVRVSNNVTS--C--IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 98 ~~~~~v~~~~~~~~-~~~~l~~~-~~dg~i~~~d~~~~~~~~~--~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
...+.+..+...+. +..++++| +...+++++|.+..+.... . ..+....+.+++..+.|+.++++-..|.|.+.
T Consensus 824 pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~L 903 (1034)
T KOG4190|consen 824 PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAIL 903 (1034)
T ss_pred cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEE
Confidence 22334444444443 44455554 7788999999987654222 1 13344678999999999999999999999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEE-EECCCCceEEEeecCC-cEeEEEeCCCCceee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKI-WNVQKGTCIHGIDAKA-QICGLEWNRHHKEIL 249 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i-~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 249 (335)
|.+++. .+.......-....++ .|..+.++.+. .|.++.+ |-.-.+......+.+. +..-+ ..-|..++
T Consensus 904 DaR~G~---vINswrpmecdllqla-apsdq~L~~sa---ldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV 974 (1034)
T KOG4190|consen 904 DARNGK---VINSWRPMECDLLQLA-APSDQALAQSA---LDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLV 974 (1034)
T ss_pred ecCCCc---eeccCCcccchhhhhc-CchhHHHHhhc---ccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeE
Confidence 988753 3444443333344443 24443444444 6888888 8776665544443322 11111 11233333
Q ss_pred eeeeeeeecCCCeEEEEECCC----Cceeeccc--CCCCceeEeEEcCCCCEEEEEeCCCcEEE
Q 019847 250 SGHGFSASGDGNKLCLWKYPN----MTKVGELQ--SSNSRILDLSQSPDGLTVATAGADETIRF 307 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~----~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 307 (335)
+. ...+.+.+|.-.. ...+..++ ...+..++++.-|-..-++.|.+.|.|.+
T Consensus 975 ~a------~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 975 TA------QNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred Ee------ccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 33 4566677774211 11111222 23456788888887777778888888875
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.8e-10 Score=86.35 Aligned_cols=249 Identities=14% Similarity=0.221 Sum_probs=176.2
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC-CceeEeeec-ccccceeEeeecCCCCCEEEEeeCCCcEEEE
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE-TSKLVRNLE-GHHRRVATSSWNHWNGHILTSGSKDKSIINH 128 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~ 128 (335)
...++||.+.++....-|...-+++.+.|.+++||--. .++.-..+. ....+++++.+.+ +...|++|-.+|++.-+
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-ESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-cceEEEEEEecceEEEE
Confidence 44567899999999898988889999999999999543 344333332 2457889999998 88999999999999988
Q ss_pred ecccCC---eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEE
Q 019847 129 DVRVSN---NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVL 205 (335)
Q Consensus 129 d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 205 (335)
.+...- ...+....|...+..+-|+....++++.+.|..+.---.+.+...... .+. ..-+++.+.-. ..
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y-~~~---~~~t~~~~d~~---~~ 168 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGY-NFE---TPASALQFDAL---YA 168 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccce-Eee---ccCCCCceeeE---EE
Confidence 775322 234456679999999999998899999999987654433332111111 110 01111111110 12
Q ss_pred EEecCCCCCeEEEEECCC--CceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce-eecccCCC
Q 019847 206 ATGGGREDGCIKIWNVQK--GTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK-VGELQSSN 281 (335)
Q Consensus 206 ~~~~g~~d~~i~i~d~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~ 281 (335)
.. |...|.|..-.+.. -.++.++.. ...+.++.|.|....+.+| ..|..+.+||+.-.+- ...+.+|.
T Consensus 169 fv--Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg------~~d~~vi~wdigg~~g~~~el~gh~ 240 (404)
T KOG1409|consen 169 FV--GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSG------ASDHSVIMWDIGGRKGTAYELQGHN 240 (404)
T ss_pred Ee--cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEec------cccCceEEEeccCCcceeeeeccch
Confidence 22 33566666555433 344555544 4689999999999999988 6799999999976543 45677899
Q ss_pred CceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 019847 282 SRILDLSQSPDGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 282 ~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
..|..+...+--+.|++++.||.|-+|+++....
T Consensus 241 ~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 241 DKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred hhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 9999998888888999999999999999987543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-11 Score=101.54 Aligned_cols=207 Identities=13% Similarity=0.231 Sum_probs=149.1
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe------eeEEeecCCCCEEEEEeecCCCEEEEEeCCC
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN------VTSCIKAHSGEVCGLKWSNEGNLLASGGDDN 166 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 166 (335)
+..+.+|...|..+.-.. +.+.+++++.|.++++|.++.... ..-+++.|..+|.++.|-.+.++++++ ||
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 456788999999988777 889999999999999999975432 334567899999999999998888765 78
Q ss_pred eEEEEEccCCCcccceeeccCCCCCeeEEEecCC--CCcEEEEecCCCCCeEEEEECCCCceEEEeec------CCcEeE
Q 019847 167 VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH--QVNVLATGGGREDGCIKIWNVQKGTCIHGIDA------KAQICG 238 (335)
Q Consensus 167 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~------~~~~~~ 238 (335)
.|.+||.-.+.....+..-. ..+.+..+..-|+ ...+++.++ ...+++++|.+..+-...++. +.-+.+
T Consensus 805 giHlWDPFigr~Laq~~dap-k~~a~~~ikcl~nv~~~iliAgcs--aeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAP-KEGAGGNIKCLENVDRHILIAGCS--AESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred cceeecccccchhHhhhcCc-ccCCCceeEecccCcchheeeecc--chhhheeeecccccceeeEEeccCCCCchheeE
Confidence 99999954332222121111 1233333444443 333444334 789999999999887766653 235789
Q ss_pred EEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEE-EecCC
Q 019847 239 LEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRF-WEAFG 312 (335)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i-w~~~~ 312 (335)
++..+.|+.++++ -.+|.|.+.|.++|+.+............++ .|.++.|+....|..+.+ |....
T Consensus 882 iaVa~~GN~lAa~------LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 882 IAVADKGNKLAAA------LSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred EEeccCcchhhHH------hcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence 9999999999887 4589999999999999988877665555555 355567777777777777 75443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.30 E-value=4e-08 Score=77.91 Aligned_cols=217 Identities=13% Similarity=0.134 Sum_probs=139.9
Q ss_pred EEEEcC-CCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee
Q 019847 63 SVSWSH-DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK 141 (335)
Q Consensus 63 ~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 141 (335)
++.|.+ ++.++++-...+.|..|+..+++... +.... ...+.+...+ ..|+.+...+ +.++|..+++. .....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~-~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKV-TVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEE-EEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcE-EEEee
Confidence 578888 66666666678999999998876543 22122 6677777425 4455555444 45558876532 22222
Q ss_pred c-----CCCCEEEEEeecCCCEEEEEeCC--------CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEe
Q 019847 142 A-----HSGEVCGLKWSNEGNLLASGGDD--------NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 142 ~-----~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
. .....+.+++.|+|++.++.... |.|..++.. .. .......-...+.++|+|+++.++++.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~----~~~~~~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK----VTVVADGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE----EEEEEEEESSEEEEEEETTSSEEEEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce----EEEEecCcccccceEECCcchheeecc
Confidence 1 34567899999999977776543 557777754 22 222222334578999999998888877
Q ss_pred cCCCCCeEEEEECCCCce-E---EEe---ecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC
Q 019847 209 GGREDGCIKIWNVQKGTC-I---HGI---DAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 209 ~g~~d~~i~i~d~~~~~~-~---~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 280 (335)
+ ..+.|..+++..... + ..+ ... ...-.++++.+|+..++. ...+.|.+++.+ ++.+..+...
T Consensus 153 s--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~------~~~~~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 153 S--FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD------WGGGRIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp T--TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE------ETTTEEEEEETT-SCEEEEEE-S
T ss_pred c--ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE------cCCCEEEEECCC-ccEEEEEcCC
Confidence 6 789999999863221 1 112 222 247789999999877764 358999999977 8888877766
Q ss_pred CCceeEeEEc-CCCCEEEEE
Q 019847 281 NSRILDLSQS-PDGLTVATA 299 (335)
Q Consensus 281 ~~~i~~~~~~-~~~~~l~~~ 299 (335)
...+++++|. ++.+.|+..
T Consensus 224 ~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 224 VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp SSSEEEEEEESTTSSEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEE
Confidence 5689999994 665555543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-09 Score=80.46 Aligned_cols=199 Identities=9% Similarity=0.005 Sum_probs=134.6
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEe
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATS 106 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 106 (335)
.+++++..|...+|...+.+.. ......|...|+-+.=.. ..-.+..++.|.++++.+++-+..........-.+.++
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h-~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGH-LYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred EEEeccccceeeeecccCcccc-eeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 4555668899999998876542 222233443332221111 22346667788889998887554333332222338889
Q ss_pred eecCCCCCEEEEeeCCCcEEEEecccCCeeeE--EeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccc--e
Q 019847 107 SWNHWNGHILTSGSKDKSIINHDVRVSNNVTS--CIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS--L 182 (335)
Q Consensus 107 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~ 182 (335)
.+++ +++++++.+....|..|.+........ .....+..=.+..|+.....+|++..||++.|||++....... .
T Consensus 165 ~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 165 HYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred EEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 9999 999999999999999999986554332 2333445556788999889999999999999999997543321 1
Q ss_pred eeccCCCCCeeEEEecCCCCc--EEEEecCCCCCeEEEEECCCCceEEEee
Q 019847 183 HRFTDHCGGVKALAWSPHQVN--VLATGGGREDGCIKIWNVQKGTCIHGID 231 (335)
Q Consensus 183 ~~~~~~~~~v~~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 231 (335)
..-..|++.+..+.|++.|.. |+.+- .-+.+.+.|+++++..+.+.
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEec---CcceEEEEEcccCceeeEEe
Confidence 223458999999999986642 44433 46789999999987766554
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-11 Score=93.85 Aligned_cols=155 Identities=14% Similarity=0.228 Sum_probs=119.5
Q ss_pred EEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccC----CeeeEEeecCCCCEEE
Q 019847 74 AVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVS----NNVTSCIKAHSGEVCG 149 (335)
Q Consensus 74 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----~~~~~~~~~~~~~i~~ 149 (335)
++.+.+-.+-+-|+++|-. +.|. ..+.|.++.|.. .+++++.|..+|.|..+|++.. ......+ -|.+.|++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhh
Confidence 4444566788889888753 3343 667899999988 8999999999999999999876 2333333 48999999
Q ss_pred EEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeE--EEecCCCCcEEEEecCCCCCeEEEEECCCCce
Q 019847 150 LKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKA--LAWSPHQVNVLATGGGREDGCIKIWNVQKGTC 226 (335)
Q Consensus 150 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 226 (335)
+..-. ++++|++.+.+|+|++||++..+..+.+..+++|...-.- +-..+....+++ ++ +|...|+|.++.+..
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s-~G--dDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFS-VG--DDCYTRIWSLDSGHL 380 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEE-cc--CeeEEEEEecccCce
Confidence 98877 7889999999999999999987766678888888654333 334455544555 54 899999999999999
Q ss_pred EEEeecCCc
Q 019847 227 IHGIDAKAQ 235 (335)
Q Consensus 227 ~~~~~~~~~ 235 (335)
+.+++.+..
T Consensus 381 l~tipf~~s 389 (425)
T KOG2695|consen 381 LCTIPFPYS 389 (425)
T ss_pred eeccCCCCc
Confidence 998876543
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4e-10 Score=89.39 Aligned_cols=248 Identities=16% Similarity=0.190 Sum_probs=157.7
Q ss_pred eecCCCCCceEEEEcCCCC-EEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecc
Q 019847 53 QVPGEDDYPTSVSWSHDAK-TLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR 131 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 131 (335)
-+++|...|..++|+|..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|.-++.+++.+|..+|.|.+||++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 4567888999999999776 7888899999999999999999888877 8999999998788999999999999999999
Q ss_pred cCCeeeEEeec--CCCCEEEEEe------ecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCc
Q 019847 132 VSNNVTSCIKA--HSGEVCGLKW------SNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203 (335)
Q Consensus 132 ~~~~~~~~~~~--~~~~i~~~~~------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 203 (335)
..+.....+.+ ...+|..++. .+.+.+|+..+.+ +..|.+.......+.....+..+...++..++....
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence 77654443332 2234444433 2234455544433 566765532222122112224566777777777777
Q ss_pred EEEEecCCCCC---eEE----EEECCCCceEEEeec---CCc-----Ee-EEEeCCCCceeeeeeeeeeecCCCeEEEEE
Q 019847 204 VLATGGGREDG---CIK----IWNVQKGTCIHGIDA---KAQ-----IC-GLEWNRHHKEILSGHGFSASGDGNKLCLWK 267 (335)
Q Consensus 204 ~~~~~~g~~d~---~i~----i~d~~~~~~~~~~~~---~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 267 (335)
++++.- .+. +++ --|-.+|.++...+. +.+ -. .+.-.++..+++ + .+.+.+.+.+||
T Consensus 345 ~l~tyR--s~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv-~----~gd~tn~lil~D 417 (463)
T KOG1645|consen 345 LLLTYR--SNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIV-V----VGDSTNELILQD 417 (463)
T ss_pred EEEEec--CCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEE-E----ecCCcceeEEec
Confidence 777763 211 011 112233433322211 000 01 111223333333 2 236789999999
Q ss_pred CCCCceeecccCCCCceeEeEEcC-CC-CEEEEEeCCCcEEEEecCC
Q 019847 268 YPNMTKVGELQSSNSRILDLSQSP-DG-LTVATAGADETIRFWEAFG 312 (335)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~-~~-~~l~~~~~dg~v~iw~~~~ 312 (335)
..+++.++++.-. .+|.++.... ++ .+|++- .|..++||+.+.
T Consensus 418 ~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 418 PHSFEVVQTLALS-EPVLDICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred cchhheeeecccC-cceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence 9999999988654 6788876543 33 456555 466899987654
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.5e-10 Score=89.90 Aligned_cols=286 Identities=16% Similarity=0.140 Sum_probs=188.9
Q ss_pred CCCCcccccceeeeecCCceEEEecCCeEEEEEecCCc-eeeEEeecCCCCCceEEEEcCCCCEEEEEEC-CCcEEEEeC
Q 019847 10 APYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGK-VKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM-DSKLQLWDA 87 (335)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~ 87 (335)
..+...+....+++-..+.++.++.||.++.|.-..-. ..-...+..|...|.+++.+-++..+.+.+. |..++++|+
T Consensus 4 ksymhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 4 KSYMHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred hhhcccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 34555565556666666889999999999999865422 2223344578888999999999999999777 999999999
Q ss_pred CCceeEeeecccccceeEeeecCCCC----CEEEEeeCCCcEEEEecccCCe-eeEEeecCCCCEEEEEeecCCCEEEEE
Q 019847 88 ETSKLVRNLEGHHRRVATSSWNHWNG----HILTSGSKDKSIINHDVRVSNN-VTSCIKAHSGEVCGLKWSNEGNLLASG 162 (335)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (335)
++-..+.-++.. .....+.|....+ .+-++.-.++.+.++|-....+ ......-|..+|..+.+++-+..+++.
T Consensus 84 En~DminmiKL~-~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 84 ENFDMINMIKLV-DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred eccchhhhcccc-cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence 876555333311 1112222322123 2233344678999999876553 334445699999999999999999999
Q ss_pred eCCCeEEEEEccCC-Cccc-----------ceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEe
Q 019847 163 GDDNVVRIWERSKM-SSSK-----------SLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI 230 (335)
Q Consensus 163 ~~dg~i~iwd~~~~-~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~ 230 (335)
...|.|.-|..... +... -+..+........++.|+|++..+-..+ .|..|++++.++|+.++.+
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~---~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN---PDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC---cccEEEEEEeccchhhhhh
Confidence 99999999997631 0000 0112223455678999999997666655 7999999999998766544
Q ss_pred ec----------------------------------CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeec
Q 019847 231 DA----------------------------------KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE 276 (335)
Q Consensus 231 ~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 276 (335)
+. ...-..+.|...+++++.+.. -.|++.++.+++.++.
T Consensus 240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~-------~gikvin~~tn~v~ri 312 (558)
T KOG0882|consen 240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI-------LGIKVINLDTNTVVRI 312 (558)
T ss_pred hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc-------eeEEEEEeecCeEEEE
Confidence 31 012345678888888887642 3466677666555433
Q ss_pred cc---------------------------CCCCceeEeEEcCCCCEEEEEeCCCcEEEE
Q 019847 277 LQ---------------------------SSNSRILDLSQSPDGLTVATAGADETIRFW 308 (335)
Q Consensus 277 ~~---------------------------~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw 308 (335)
+- +...+. +.+.+|..+++++-...+++++
T Consensus 313 ~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~--~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 313 LGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL--LEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred eccchhhhhhhHHHHhhhhhccchhhhhhhccCcc--cccCCCCeEEEeeeecceEEEE
Confidence 21 111111 2355676677777777777777
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.3e-08 Score=74.47 Aligned_cols=237 Identities=12% Similarity=0.085 Sum_probs=142.9
Q ss_pred cCCceEEEecCCeEEEEEecCCc--eeeEEee-cCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecc---
Q 019847 25 GRNNVLAVALGPVLFLWKWENGK--VKKLLQV-PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEG--- 98 (335)
Q Consensus 25 ~~~~~~~~~~~~~i~vw~~~~~~--~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--- 98 (335)
++++++|+-.|..|.|-..++.- .....+. +.....-+.++||||+.+||.+...|+|+++|+...+ +..+..
T Consensus 7 ~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~ 85 (282)
T PF15492_consen 7 SDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMS 85 (282)
T ss_pred CCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccc
Confidence 45688999999999888765432 1111222 2223345789999999999999999999999987533 333322
Q ss_pred ----cccceeEeeecCCC-----CCEEEEeeCCCcEEEEecccC--Ce--eeEE---eecCCCCEEEEEeecCCCEEEEE
Q 019847 99 ----HHRRVATSSWNHWN-----GHILTSGSKDKSIINHDVRVS--NN--VTSC---IKAHSGEVCGLKWSNEGNLLASG 162 (335)
Q Consensus 99 ----~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~~~d~~~~--~~--~~~~---~~~~~~~i~~~~~~~~~~~l~~~ 162 (335)
-...|..+.|.+.. ...|++-..+|.++-|-+..+ +. .... ...+...|.++.++|..++|++|
T Consensus 86 ~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVg 165 (282)
T PF15492_consen 86 FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVG 165 (282)
T ss_pred cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEe
Confidence 23567777776532 335677777888887776321 11 1111 12346789999999998988887
Q ss_pred eCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC------eEEEEECCCCceEEE-eecCCc
Q 019847 163 GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG------CIKIWNVQKGTCIHG-IDAKAQ 235 (335)
Q Consensus 163 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~------~i~i~d~~~~~~~~~-~~~~~~ 235 (335)
+.... +... -......+++-..-.+.++..-+.+ ..|+ +-.+|.+-+.+.... ......
T Consensus 166 G~~~~------~~~~-------s~a~~~GLtaWRiL~~~Pyyk~v~~-~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~ 231 (282)
T PF15492_consen 166 GCEQN------QDGM-------SKASSCGLTAWRILSDSPYYKQVTS-SEDDITASSKRRGLLRIPSFKFFSRQGQEQDG 231 (282)
T ss_pred ccCCC------CCcc-------ccccccCceEEEEcCCCCcEEEccc-cCccccccccccceeeccceeeeeccccCCCc
Confidence 75432 0000 0111223333333333333322211 0111 123344333222211 123557
Q ss_pred EeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCC
Q 019847 236 ICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNS 282 (335)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 282 (335)
|..|..||+|..|++. ..+|.|.+|++.+..+......++.
T Consensus 232 i~kmSlSPdg~~La~i------h~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 232 IFKMSLSPDGSLLACI------HFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred eEEEEECCCCCEEEEE------EcCCeEEEEecCcchhhcccchhhC
Confidence 9999999999999988 4599999999999888777654433
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-08 Score=84.58 Aligned_cols=276 Identities=7% Similarity=-0.040 Sum_probs=159.0
Q ss_pred ecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCce-----EEEEcC--CCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 24 WGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPT-----SVSWSH--DAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 24 ~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~-----~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
..++.+++.+.++.+.-+|.++|+..-...+........ .+.-.| ++..++.++.+|.+..+|.++|+.+.+.
T Consensus 67 v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 67 VAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred EECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 345778888888999999999998766555433111100 001111 4567788888999999999999988877
Q ss_pred cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec--CCCEEEEEeCCCeEEEEEcc
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN--EGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~ 174 (335)
............ .+..++.+..++.+..+|.++++..-+.............-+| .+..++.++.+|.+..+|..
T Consensus 147 ~~~~~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 147 KVAGEALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred cCCCceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence 643322212222 3456777888999999999988765443221110000000112 23356677788999988877
Q ss_pred CCCcccceeeccCC-CC---CeeEEEecC--CCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCcee
Q 019847 175 KMSSSKSLHRFTDH-CG---GVKALAWSP--HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEI 248 (335)
Q Consensus 175 ~~~~~~~~~~~~~~-~~---~v~~~~~~~--~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (335)
+++..-........ .. ....+.-+| .+..+++.+ .+|.+..+|..+|+.+...+.... ..+. ..+..+
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~-~~~~--~~~~~v 297 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA---YNGNLVALDLRSGQIVWKREYGSV-NDFA--VDGGRI 297 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE---cCCeEEEEECCCCCEEEeecCCCc-cCcE--EECCEE
Confidence 65432111100000 00 000111112 133455544 689999999999988766543221 1111 122233
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceeecccCCCC-ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNS-RILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
...+.++.+..+|..+++.+-....... ...+... .+.+|+.++.||.+.+.|..+++..
T Consensus 298 ------y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 298 ------YLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred ------EEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 3336799999999999887654432111 1222222 2446788899999999998877544
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.3e-12 Score=109.41 Aligned_cols=221 Identities=15% Similarity=0.240 Sum_probs=159.4
Q ss_pred EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCC--cEEEEe
Q 019847 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK--SIINHD 129 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~~~d 129 (335)
..+..|+...+|++|+-+.+.|++|+..|.|+++++.+|........|..+|+.+.-+. ++..+++.+.-. -..+|+
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHHHhc
Confidence 34557888899999999999999999999999999999999999999999999999988 777666655433 467899
Q ss_pred cccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccc-eeeccCCCCCeeEEEecCCCCcEEEEe
Q 019847 130 VRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS-LHRFTDHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
+.........+. .-.++.|+..-..-+.|.......+||+.+...... +....+.+..-++..|+|+.. ++.
T Consensus 1174 ~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~-LIl-- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-LIL-- 1246 (1516)
T ss_pred cccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-eEe--
Confidence 875443333332 345678887555555566556789999988654322 111112223346788999985 555
Q ss_pred cCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeE
Q 019847 209 GGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLS 288 (335)
Q Consensus 209 ~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 288 (335)
.|| .+||.+..+.++.+..-..-..=.|+|.|..++.- -.|||+++.+.++....-.. ..+.
T Consensus 1247 ---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIIN-----------SEIwD~RTF~lLh~VP~Ldq--c~Vt 1308 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIIN-----------SEIWDMRTFKLLHSVPSLDQ--CAVT 1308 (1516)
T ss_pred ---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEee-----------chhhhhHHHHHHhcCccccc--eEEE
Confidence 466 58999998888877654444455799999888764 25899999888877665433 4567
Q ss_pred EcCCCCEEEE
Q 019847 289 QSPDGLTVAT 298 (335)
Q Consensus 289 ~~~~~~~l~~ 298 (335)
|+..|..+..
T Consensus 1309 FNstG~VmYa 1318 (1516)
T KOG1832|consen 1309 FNSTGDVMYA 1318 (1516)
T ss_pred eccCccchhh
Confidence 7777765543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-10 Score=90.31 Aligned_cols=161 Identities=14% Similarity=0.189 Sum_probs=109.8
Q ss_pred ceEEEEcCCCCEEEEEECCCcEEEEeCCCcee----EeeecccccceeEeeecCCCCCEEEEeeCCC---cEEEEecccC
Q 019847 61 PTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL----VRNLEGHHRRVATSSWNHWNGHILTSGSKDK---SIINHDVRVS 133 (335)
Q Consensus 61 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~ 133 (335)
+..+..+|.++++|++..+....++++..... .... .-...-+++.|.. +......+..-| .+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADS- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeee-ccceEEEEeecCCceeeeeecccc-
Confidence 34556778899999998888877887754332 2221 1223344445544 333444444444 445555443
Q ss_pred CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceee-ccCCCCCeeEEEecCCCCcEEEEecCCC
Q 019847 134 NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHR-FTDHCGGVKALAWSPHQVNVLATGGGRE 212 (335)
Q Consensus 134 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 212 (335)
.......+|-+.++.++|+||+++++++..|..|++-..... ..+.. ..+|..-|..++.-++. .+.+++ -
T Consensus 142 -~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~---f~IesfclGH~eFVS~isl~~~~--~LlS~s--G 213 (390)
T KOG3914|consen 142 -GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT---FVIESFCLGHKEFVSTISLTDNY--LLLSGS--G 213 (390)
T ss_pred -cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc---cchhhhccccHhheeeeeeccCc--eeeecC--C
Confidence 224445689999999999999999999999999999775432 22332 35799999999998875 445544 5
Q ss_pred CCeEEEEECCCCceEEEeec
Q 019847 213 DGCIKIWNVQKGTCIHGIDA 232 (335)
Q Consensus 213 d~~i~i~d~~~~~~~~~~~~ 232 (335)
|+++++||+++|+.+.++..
T Consensus 214 D~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CCcEEEEecccCCcccccch
Confidence 99999999999999877754
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.1e-10 Score=83.02 Aligned_cols=161 Identities=17% Similarity=0.338 Sum_probs=103.6
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee-EeeecccccceeEeeecCCCCCEEEEee-----CCCcEEEEec
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL-VRNLEGHHRRVATSSWNHWNGHILTSGS-----KDKSIINHDV 130 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~~~d~ 130 (335)
|+++-.+-+.+-.++.++++..||.+.+++.+.-.. ...+......-.+.++.. .++.+.++. .-+..+.|++
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~ 166 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNAQDNFYANTL 166 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceee-cccEEecCCcceEeeccceeeecc
Confidence 333333333444567899999999999999765211 111111111222223333 445554443 2235566776
Q ss_pred ccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEec
Q 019847 131 RVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
+..+.+...... ...|.+++-+| +.+.+++|+.||.+-+||.+.. ..+...+..|+.++..+-|+|..+.-+.+++
T Consensus 167 ~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s 243 (319)
T KOG4714|consen 167 DPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS 243 (319)
T ss_pred cccccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccc--cchHHHHHHhhhhhhheeccCCCchheeEec
Confidence 644433322222 23489999999 5667888999999999999876 3456667889999999999998776666666
Q ss_pred CCCCCeEEEEECCC
Q 019847 210 GREDGCIKIWNVQK 223 (335)
Q Consensus 210 g~~d~~i~i~d~~~ 223 (335)
+||.+.-||..+
T Consensus 244 --edGslw~wdas~ 255 (319)
T KOG4714|consen 244 --EDGSLWHWDAST 255 (319)
T ss_pred --CCCcEEEEcCCC
Confidence 999999999764
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-10 Score=88.77 Aligned_cols=164 Identities=13% Similarity=0.183 Sum_probs=116.8
Q ss_pred EEEEEeecCCCEEEEEeCCCeEEEEEccCCCc-ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc
Q 019847 147 VCGLKWSNEGNLLASGGDDNVVRIWERSKMSS-SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT 225 (335)
Q Consensus 147 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~ 225 (335)
...+..+++++++|.+..+....+++.+.... .+.+.... -...-+++.+..+....+++-.......+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34456678889999998888888888775443 22222221 22223444554444444444321155667777766666
Q ss_pred eEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc-CCCCceeEeEEcCCCCEEEEEeCCCc
Q 019847 226 CIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ-SSNSRILDLSQSPDGLTVATAGADET 304 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~ 304 (335)
+...+-+-..+..++++||++.++++ ..|..|++-.+.....+..+. +|..-|..++.-++. .|+++|.|++
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~Iita------DRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~t 216 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITA------DRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKT 216 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEe------cCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCc
Confidence 66666666789999999999999987 679999998888776666654 699999999988775 4899999999
Q ss_pred EEEEecCCCCCCCC
Q 019847 305 IRFWEAFGPSGDED 318 (335)
Q Consensus 305 v~iw~~~~~~~~~~ 318 (335)
+++||+.+++....
T Consensus 217 lr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 217 LRLWDITSGKLLDT 230 (390)
T ss_pred EEEEecccCCcccc
Confidence 99999999887643
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-07 Score=73.01 Aligned_cols=215 Identities=16% Similarity=0.241 Sum_probs=140.2
Q ss_pred eeeecC--CceEEEe-cCCeEEEEEecCCceeeEEeecCCCCCceEEEEc-CCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 21 VIDWGR--NNVLAVA-LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 21 ~~~~~~--~~~~~~~-~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
+..|.+ +.++.+. ..+.|+.|+..+++.. ...+++ ...+++. +++ .|+.+... .+.++|..+++.....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~----~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG----PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS----EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC----CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEe
Confidence 466775 5666665 5789999999887643 333322 6788888 565 55555554 4666699888654443
Q ss_pred cc-----cccceeEeeecCCCCCEEEEeeCC--------CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEE-EE
Q 019847 97 EG-----HHRRVATSSWNHWNGHILTSGSKD--------KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLA-SG 162 (335)
Q Consensus 97 ~~-----~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~ 162 (335)
.. .....+.+++.+ ++++.++.... |.+..++.. ..... ....-...+.++|+|+++.|+ +-
T Consensus 77 ~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~-~~~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTV-VADGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEE-EEEEESSEEEEEEETTSSEEEEEE
T ss_pred eccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC--CeEEE-EecCcccccceEECCcchheeecc
Confidence 32 346788999999 88877776544 446666654 33233 233345678999999998775 55
Q ss_pred eCCCeEEEEEccCCCc-c---cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEe
Q 019847 163 GDDNVVRIWERSKMSS-S---KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQIC 237 (335)
Q Consensus 163 ~~dg~i~iwd~~~~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~ 237 (335)
+..+.|..+++..... . ..+..+....+..-.+++..+|. +.++.. ..+.|.++|.+ |+.+..+..+ ..++
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~--~~~~I~~~~p~-G~~~~~i~~p~~~~t 228 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADW--GGGRIVVFDPD-GKLLREIELPVPRPT 228 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEE--TTTEEEEEETT-SCEEEEEE-SSSSEE
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEc--CCCEEEEECCC-ccEEEEEcCCCCCEE
Confidence 6778899999864332 1 12222333333477899999995 555543 58999999987 9988888876 6899
Q ss_pred EEEeC-CCCceeee
Q 019847 238 GLEWN-RHHKEILS 250 (335)
Q Consensus 238 ~~~~~-~~~~~~~~ 250 (335)
+++|. ++.+.|+.
T Consensus 229 ~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 229 NCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEEESTTSSEEEE
T ss_pred EEEEECCCCCEEEE
Confidence 99994 56555543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-08 Score=84.40 Aligned_cols=263 Identities=9% Similarity=0.003 Sum_probs=154.7
Q ss_pred eecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceE-EEEcCCCCEEEEEECCCcEEEEeCCCceeEeeeccccc
Q 019847 23 DWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTS-VSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHR 101 (335)
Q Consensus 23 ~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 101 (335)
...++.+++++.++.++.+|.++|+..-...+.+. +.+ ... .+..++++..+|.+.-+|.++|+.+........
T Consensus 117 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~---~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 117 TVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE---ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred EEECCEEEEEcCCCEEEEEECCCCCCcccccCCCc---eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCC
Confidence 33456788888899999999999987655554321 111 111 245677788899999999999998877753211
Q ss_pred ceeE-eeecCC-CCCEEEEeeCCCcEEEEecccCCeeeEEeecCCC------CEEEEEeec--CCCEEEEEeCCCeEEEE
Q 019847 102 RVAT-SSWNHW-NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSG------EVCGLKWSN--EGNLLASGGDDNVVRIW 171 (335)
Q Consensus 102 ~v~~-~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~------~i~~~~~~~--~~~~l~~~~~dg~i~iw 171 (335)
.... ..-+|. .+..++.++.+|.+..+|..+++..-+....... ....+.-+| .+..++.++.+|.+..+
T Consensus 192 ~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al 271 (394)
T PRK11138 192 SLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL 271 (394)
T ss_pred cccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence 1100 000110 2345677788899999998876643322111000 011111223 34567777789999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec--CCcEeEEEeCCCCceee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA--KAQICGLEWNRHHKEIL 249 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 249 (335)
|..+++. +-... ......+.. .+..+++.. .+|.+..+|..+|+.+-..+. .....+... .+..++
T Consensus 272 d~~tG~~---~W~~~--~~~~~~~~~--~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~ 339 (394)
T PRK11138 272 DLRSGQI---VWKRE--YGSVNDFAV--DGGRIYLVD---QNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLV 339 (394)
T ss_pred ECCCCCE---EEeec--CCCccCcEE--ECCEEEEEc---CCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEE
Confidence 9876532 22111 111112222 234566544 699999999999987654432 111111111 123333
Q ss_pred eeeeeeeecCCCeEEEEECCCCceeecccCCCCceeE-eEEcCCCCEEEEEeCCCcEEEEec
Q 019847 250 SGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILD-LSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
. ++.+|.+...|..+++.+.+.+-....+.+ ..+ .+..|+.++.||.++.++.
T Consensus 340 v------~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 340 V------GDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred E------EeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 3 367999999999999988776543332322 222 2347888999999988764
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.6e-09 Score=89.03 Aligned_cols=244 Identities=12% Similarity=0.175 Sum_probs=171.6
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCC-----------CCEEEEeeCCCcEEE
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWN-----------GHILTSGSKDKSIIN 127 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~l~~~~~dg~i~~ 127 (335)
..-.++.|+|.| ++|.|+. ..|.+-|..+-+.++.+..|...|+.+.|.|.. .-+|+++...|.|.+
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 345788999888 6777764 479999999999999999999999999998731 225788888999999
Q ss_pred EecccCCeeeEEeecCCCCEEEEEeec---CC-CEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCc
Q 019847 128 HDVRVSNNVTSCIKAHSGEVCGLKWSN---EG-NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203 (335)
Q Consensus 128 ~d~~~~~~~~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 203 (335)
||...... ...+..|..++..++|-+ +. ..|++-....++.+|+..+++ .+-..........|+.+.|-...
T Consensus 94 ~d~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~---k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 94 VDFVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE---KFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred EEehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc---eeeccccCCcceeeeeeCCCCcc
Confidence 99986554 445677889999999977 33 466666778899999977653 34444444456677899987665
Q ss_pred EEEEecCCCCCeEEEEECCC-------CceEEEeecCC--------------------------cEeEEEeCCCCceeee
Q 019847 204 VLATGGGREDGCIKIWNVQK-------GTCIHGIDAKA--------------------------QICGLEWNRHHKEILS 250 (335)
Q Consensus 204 ~~~~~~g~~d~~i~i~d~~~-------~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~ 250 (335)
-++.-+ ..|.+.+-+.-. ++..+.-..+. ....++|+|.-+.++.
T Consensus 170 h~~~l~--s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lf 247 (1062)
T KOG1912|consen 170 HFCVLG--SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILF 247 (1062)
T ss_pred eEEEEc--cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEE
Confidence 555543 567766665421 12221111100 0122466777655443
Q ss_pred eeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCC--CEEEEEeCCCcEEEEecCCCCCC
Q 019847 251 GHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDG--LTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
. .-...+.++|++-...+....-..+.+.-+.+-|++ ..|++...||.+.+|--+.....
T Consensus 248 i------~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~ 309 (1062)
T KOG1912|consen 248 I------TFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTE 309 (1062)
T ss_pred E------EeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcc
Confidence 3 237889999999888888877666666667777764 67999999999999987664433
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-07 Score=73.88 Aligned_cols=220 Identities=15% Similarity=0.104 Sum_probs=137.0
Q ss_pred CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCC
Q 019847 35 GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGH 114 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 114 (335)
++.|..||..+++..-...+........+. ..++++.+++++.++.+..||..+|+.+..+.. ...+..... . .+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~-~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-V-DGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-E-ETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-e-ccc
Confidence 678999999999887666653211222211 333677788888999999999999999887775 333222222 2 566
Q ss_pred EEEEeeCCCcEEEEecccCCeeeEEeecCC---CCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCC
Q 019847 115 ILTSGSKDKSIINHDVRVSNNVTSCIKAHS---GEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGG 191 (335)
Q Consensus 115 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 191 (335)
.++.++.++.+..+|..+++...+...... ...........+..++++..++.|..+|++++.. +.........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~---~w~~~~~~~~ 154 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL---LWKYPVGEPR 154 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE---EEEEESSTT-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE---EEEeecCCCC
Confidence 677777888999999988887665322221 1122223333477888888899999999887543 3322222211
Q ss_pred ----------e-eEEEecCCCCcEEEEecCCCCCe-EEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecC
Q 019847 192 ----------V-KALAWSPHQVNVLATGGGREDGC-IKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGD 259 (335)
Q Consensus 192 ----------v-~~~~~~~~~~~~~~~~~g~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (335)
+ ..+.+. ++ .++++. .++. +.+ |+++++.+.... ....... ....+..++.. +.
T Consensus 155 ~~~~~~~~~~~~~~~~~~-~~-~v~~~~---~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~------~~ 220 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVIS-DG-RVYVSS---GDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSVDGGTLYVT------SS 220 (238)
T ss_dssp SS--EEEETTEEEEEECC-TT-EEEEEC---CTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EECCCTEEEEE------ET
T ss_pred CCcceeeecccccceEEE-CC-EEEEEc---CCCeEEEE-ECCCCCEEEEec-CCCccCC-ceeeCCEEEEE------eC
Confidence 1 223333 34 566655 4665 555 999999765333 2333321 34566666655 46
Q ss_pred CCeEEEEECCCCceee
Q 019847 260 GNKLCLWKYPNMTKVG 275 (335)
Q Consensus 260 ~~~i~i~d~~~~~~~~ 275 (335)
++.+..||+.+++.+-
T Consensus 221 ~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 221 DGRLYALDLKTGKVVW 236 (238)
T ss_dssp TTEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCCEEe
Confidence 8999999999998753
|
... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=99.14 E-value=5e-07 Score=71.31 Aligned_cols=218 Identities=14% Similarity=0.201 Sum_probs=144.5
Q ss_pred eeecC--CceEEEec--CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-----CCCcEEEEeCC-Cce
Q 019847 22 IDWGR--NNVLAVAL--GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-----MDSKLQLWDAE-TSK 91 (335)
Q Consensus 22 ~~~~~--~~~~~~~~--~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~iw~~~-~~~ 91 (335)
++.++ ...++.+. .....+||..+++....+.-+...----.-.|++||++|++.- ..|.|-|||.. +-+
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 44455 34555542 4578899999998766544321111112357999999999863 46899999998 668
Q ss_pred eEeeecccccceeEeeecCCCCCEEEEee------------------CCCcEEEEecccCCeeeE-Ee--ecCCCCEEEE
Q 019847 92 LVRNLEGHHRRVATSSWNHWNGHILTSGS------------------KDKSIINHDVRVSNNVTS-CI--KAHSGEVCGL 150 (335)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------------------~dg~i~~~d~~~~~~~~~-~~--~~~~~~i~~~ 150 (335)
.+.++..+.-....+.+.| ++..|+.+. .+-++...|..++..+.+ .+ ..|...|..+
T Consensus 90 ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHL 168 (305)
T PF07433_consen 90 RIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHL 168 (305)
T ss_pred EEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeE
Confidence 8888988888888899999 887666652 223445555555554332 23 3367789999
Q ss_pred EeecCCCEEEEEeCCCe-------EEEEEccCCCccccee----eccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEE
Q 019847 151 KWSNEGNLLASGGDDNV-------VRIWERSKMSSSKSLH----RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219 (335)
Q Consensus 151 ~~~~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~ 219 (335)
++.++|..++..-..|. +-+++... ....+. ....-.+.+-++++++++..+++++- ..+.+.+|
T Consensus 169 a~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP--rGg~~~~~ 244 (305)
T PF07433_consen 169 AVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP--RGGRVAVW 244 (305)
T ss_pred EecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC--CCCEEEEE
Confidence 99999877666544432 34444222 111111 11234577899999999988888876 88999999
Q ss_pred ECCCCceEEEeecCCcEeEEEeCCCC
Q 019847 220 NVQKGTCIHGIDAKAQICGLEWNRHH 245 (335)
Q Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (335)
|..+++.+..... ..++.++..+++
T Consensus 245 d~~tg~~~~~~~l-~D~cGva~~~~~ 269 (305)
T PF07433_consen 245 DAATGRLLGSVPL-PDACGVAPTDDG 269 (305)
T ss_pred ECCCCCEeecccc-CceeeeeecCCc
Confidence 9999998766543 345666666666
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-07 Score=74.97 Aligned_cols=217 Identities=12% Similarity=0.065 Sum_probs=129.3
Q ss_pred CCcEEEEeCCCceeEeeecccccceeEee--ecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCC
Q 019847 79 DSKLQLWDAETSKLVRNLEGHHRRVATSS--WNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156 (335)
Q Consensus 79 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 156 (335)
+|.|..||..+|+.+...... ....... ..+ ++..+++++.++.+..||..+++...+.-. ...+.... ...+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~-~~~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG-PGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAP-VVDG 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS-SSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGE-EEET
T ss_pred CCEEEEEECCCCCEEEEEECC-CCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeec--ccccccee-eecc
Confidence 689999999999998887531 1122222 222 566777778999999999987776444332 22111111 2244
Q ss_pred CEEEEEeCCCeEEEEEccCCCcccceeeccCCC-CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCc
Q 019847 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHC-GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ 235 (335)
Q Consensus 157 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~ 235 (335)
..+++++.++.++.+|..+++..-......... ...........+..+++.. .++.|..+|+++|+.+.......+
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT---SSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE---TCSEEEEEETTTTEEEEEEESSTT
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe---ccCcEEEEecCCCcEEEEeecCCC
Confidence 566777788899999977765432211111011 1111122222254555554 589999999999999888765331
Q ss_pred E------------eEEEeCCCCceeeeeeeeeeecCCCe-EEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC
Q 019847 236 I------------CGLEWNRHHKEILSGHGFSASGDGNK-LCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302 (335)
Q Consensus 236 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 302 (335)
. ..+.+. ++ .++.. ..++. +.+ |..+++.+.... ...+..+ ...++..|+.++.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~-~~-~v~~~------~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~ 221 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVIS-DG-RVYVS------SGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSD 221 (238)
T ss_dssp -SS--EEEETTEEEEEECC-TT-EEEEE------CCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETT
T ss_pred CCCcceeeecccccceEEE-CC-EEEEE------cCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCC
Confidence 1 222222 33 33332 44664 555 999998664333 2223331 34566788888899
Q ss_pred CcEEEEecCCCCC
Q 019847 303 ETIRFWEAFGPSG 315 (335)
Q Consensus 303 g~v~iw~~~~~~~ 315 (335)
+.|..||+.+++.
T Consensus 222 ~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 222 GRLYALDLKTGKV 234 (238)
T ss_dssp TEEEEEETTTTEE
T ss_pred CEEEEEECCCCCE
Confidence 9999999998753
|
... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-09 Score=81.90 Aligned_cols=209 Identities=15% Similarity=0.279 Sum_probs=140.5
Q ss_pred cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe----eeEEeecCC------------CCEEEEEeecCC--CEEE
Q 019847 99 HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN----VTSCIKAHS------------GEVCGLKWSNEG--NLLA 160 (335)
Q Consensus 99 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~~~------------~~i~~~~~~~~~--~~l~ 160 (335)
....|+++.|.. .|.++++|...|.|.+|.-+.... ....+++|. ..|..+.|..++ ..++
T Consensus 25 ead~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 346789999988 899999999999999998654331 122244443 346778886643 4666
Q ss_pred EEeCCCeEEEEEccCCCc----------------c------cc-----------------eee-ccCCCCCeeEEEecCC
Q 019847 161 SGGDDNVVRIWERSKMSS----------------S------KS-----------------LHR-FTDHCGGVKALAWSPH 200 (335)
Q Consensus 161 ~~~~dg~i~iwd~~~~~~----------------~------~~-----------------~~~-~~~~~~~v~~~~~~~~ 200 (335)
..+.|.+|++|.+..... . +. .+. -..|.--+.++.|+.|
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 777899999998764310 0 00 000 1346666889999998
Q ss_pred CCcEEEEecCCCCCeEEEEECCCCce---EEEeecC------CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC
Q 019847 201 QVNVLATGGGREDGCIKIWNVQKGTC---IHGIDAK------AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM 271 (335)
Q Consensus 201 ~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~ 271 (335)
...++.+ .|=.|.+|+++.... +..++.+ .-|++..|+|....+.. .++..|.|++-|++..
T Consensus 184 ~et~lSa----DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fm-----YSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 184 KETLLSA----DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFM-----YSSSKGEIKLNDLRQS 254 (460)
T ss_pred hheeeec----cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEE-----EecCCCcEEehhhhhh
Confidence 8766654 688999999875322 2222222 24788899998765543 2367999999999843
Q ss_pred ce------eec----------ccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 272 TK------VGE----------LQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 272 ~~------~~~----------~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
.+ +.. +.+-...|.++.|+++|+++++-+. -+|++||+...+...+
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pik 316 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIK 316 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCce
Confidence 21 111 1122346888999999999987765 5899999988765543
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.2e-10 Score=94.28 Aligned_cols=208 Identities=16% Similarity=0.305 Sum_probs=153.5
Q ss_pred ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee-cCCCCEEEEEeecC--CCEEEEEeCCCeEEEEEccCC
Q 019847 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK-AHSGEVCGLKWSNE--GNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 100 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~ 176 (335)
.+++..+..+| .++-++.++.-| +.+.|+.......+.+. ...-.+-...|+|. -.+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p-~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINP-SGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeecc-ccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 46777888888 788888887766 44566655443333332 12234667788873 334455555667789998877
Q ss_pred CcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc-eEEEee-cCCcEeEEEeCCCCceeeeeeee
Q 019847 177 SSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT-CIHGID-AKAQICGLEWNRHHKEILSGHGF 254 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 254 (335)
.....-..+.+|...|+.+.|+|..+.++++++ .|-.+..||+++.. ++..+. -+.....+.|+.....+.+.
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcs--vdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas--- 176 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCS--VDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS--- 176 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeecc--ccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh---
Confidence 666666677889999999999999999999998 99999999998764 333333 35567788888776666554
Q ss_pred eeecCCCeEEEEECCCC-ceeecccCCCCceeEeEEcCC-CCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 255 SASGDGNKLCLWKYPNM-TKVGELQSSNSRILDLSQSPD-GLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 255 ~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
+..+.|.+||.+.+ .++..+++|...|+.+.|..- ...+.+.+.||+|++|+.+......
T Consensus 177 ---shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~ 238 (1081)
T KOG0309|consen 177 ---SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES 238 (1081)
T ss_pred ---ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc
Confidence 66899999999864 677888999999999998763 3467889999999999998765444
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6e-10 Score=86.73 Aligned_cols=144 Identities=16% Similarity=0.174 Sum_probs=111.3
Q ss_pred eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc-----eeEeeecccccce
Q 019847 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-----KLVRNLEGHHRRV 103 (335)
Q Consensus 29 ~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~v 103 (335)
-++++.+..|-+-|++++.... + ...+.|.++.|...++++..|+.+|.|..+|++.+ .+...+. |...|
T Consensus 227 hfs~G~sqqv~L~nvetg~~qs---f-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssv 301 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQQS---F-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSV 301 (425)
T ss_pred eecccccceeEEEEeecccccc---c-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcch
Confidence 4667888899999999986422 2 24677999999998999999999999999999864 3444444 88999
Q ss_pred eEeeecCCCCCEEEEeeCCCcEEEEecccCCe--eeEEeecCCCCEE--EEEeecCCCEEEEEeCCCeEEEEEccCCC
Q 019847 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSNN--VTSCIKAHSGEVC--GLKWSNEGNLLASGGDDNVVRIWERSKMS 177 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~i~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 177 (335)
+++.....++..|++.+.+|.|++||++..+. -+..+.+|-..-. -+...+....+++++.|...+||.++.+.
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 99987766888999999999999999986544 2444566654322 23345667788889999999999988753
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-08 Score=87.95 Aligned_cols=281 Identities=16% Similarity=0.234 Sum_probs=165.1
Q ss_pred CCCcccccceeeeecCC-ceEEEe-----cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEE
Q 019847 11 PYLMEDYYSKVIDWGRN-NVLAVA-----LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQL 84 (335)
Q Consensus 11 ~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (335)
.++..+...+..+|+|. .+++++ ..|.|.||- ++|++..-.+.+-| +++++|+|..-.|+.|-.-|.+.+
T Consensus 10 E~~Dsdavsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v 85 (1416)
T KOG3617|consen 10 EFLDSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDV 85 (1416)
T ss_pred ecccccccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccccee---hhhhccChHHHHHhhccccceeEE
Confidence 34445666777899994 455543 468899884 67776555555555 567999999988999999999999
Q ss_pred EeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee-EEeecCC--CC--EEEEEeecCCC--
Q 019847 85 WDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT-SCIKAHS--GE--VCGLKWSNEGN-- 157 (335)
Q Consensus 85 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~--~~--i~~~~~~~~~~-- 157 (335)
|...+.+.-.....|..+|..+.|++ +|..++++..-|.+.+|.....+.+. ..+..|. .. ..+...++++.
T Consensus 86 ~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~ 164 (1416)
T KOG3617|consen 86 QKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEK 164 (1416)
T ss_pred EecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHh
Confidence 99988887777778999999999999 99999999999999999987433221 1111222 22 23444455532
Q ss_pred ----EEEEEeCCCeEE-EEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec
Q 019847 158 ----LLASGGDDNVVR-IWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA 232 (335)
Q Consensus 158 ----~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 232 (335)
..++.+.+..+- .++.+.... -.. ..|. =.|+|..+++++ .+|+|+..| ++|++....+.
T Consensus 165 ~~laKaaVtgDe~alD~~fnwk~~~a---~rs-~~ks-------gv~~g~~F~~~~---~~GtVyyvd-q~g~~~~V~k~ 229 (1416)
T KOG3617|consen 165 FKLAKAAVTGDESALDEPFNWKESLA---ERS-DEKS-------GVPKGTEFLFAG---KSGTVYYVD-QNGRQRTVHKL 229 (1416)
T ss_pred hhhhhhhccCchhhhcccccCccchh---hcc-cccc-------CCCCCcEEEEEc---CCceEEEEc-CCCcEEEEEEc
Confidence 223333333332 333221000 000 0011 135665555555 799999888 45666555544
Q ss_pred CCcEeEEEeCCCCceeeeee-------------e-----------eeeecCCCeEEEEECCC---CceeecccCCCCcee
Q 019847 233 KAQICGLEWNRHHKEILSGH-------------G-----------FSASGDGNKLCLWKYPN---MTKVGELQSSNSRIL 285 (335)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~-------------~-----------~~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~i~ 285 (335)
.+. ..+-|.+....+.+-. + --.++..|.|..=.... ..+...+ .....++
T Consensus 230 dS~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~-e~ge~~~ 307 (1416)
T KOG3617|consen 230 DSE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGL-ELGEGIL 307 (1416)
T ss_pred cch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhh-hcCCceE
Confidence 332 1122222211111110 0 00011112221111100 0000001 1234699
Q ss_pred EeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 286 DLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 286 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+++++..+..|..|...|.+.+|.-.+.
T Consensus 308 c~cY~~~~~~l~agt~~gnv~~w~~v~~ 335 (1416)
T KOG3617|consen 308 CMCYGEKEIRLWAGTKEGNVTIWLDVNK 335 (1416)
T ss_pred EEEEeccceEEEecccCCcEEEeeecCc
Confidence 9999999999999999999999965543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.5e-10 Score=59.75 Aligned_cols=38 Identities=34% Similarity=0.567 Sum_probs=36.0
Q ss_pred ceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 272 TKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
+++.++.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.2e-08 Score=80.06 Aligned_cols=245 Identities=14% Similarity=0.106 Sum_probs=166.6
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC---ceeEeeecccccceeEeeecCCCCCEEEEeeC-CCcEEEEeccc
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET---SKLVRNLEGHHRRVATSSWNHWNGHILTSGSK-DKSIINHDVRV 132 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~ 132 (335)
|.+.|+.+.- ...+++.+++.||.++.|.-.. -+.+..+..|...+.+++.+. ++.++.+.+. |..++++|+++
T Consensus 8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeec
Confidence 6677776644 3567999999999999997543 245566778888999999888 8999999777 99999999986
Q ss_pred CCee-eEEeecCCCCEEEEEeecC-C-CEEEEE-eCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEe
Q 019847 133 SNNV-TSCIKAHSGEVCGLKWSNE-G-NLLASG-GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 133 ~~~~-~~~~~~~~~~i~~~~~~~~-~-~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
-.-+ ...+....+.+..+ .++. . ..++++ -.+|.+.++|-.... .+....-.-|..+|.++.+.|.++..++..
T Consensus 86 ~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~-~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDF-CQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred cchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCc-CccceecccccCceEEEEeeccccceeecc
Confidence 5432 11122223332222 1221 1 133333 457899999966432 233344455899999999999997655533
Q ss_pred cCCCCCeEEEEECCC------CceEEEe----------ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc
Q 019847 209 GGREDGCIKIWNVQK------GTCIHGI----------DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 209 ~g~~d~~i~i~d~~~------~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 272 (335)
..|.|..|..+. .+....+ +......++.|+|++..+.+- +.|..|++++.++++
T Consensus 164 ---~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl------~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 164 ---ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL------NPDRKVRGFVFKTGK 234 (558)
T ss_pred ---ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc------CcccEEEEEEeccch
Confidence 689999999872 1121122 234568899999999998876 679999999999887
Q ss_pred eeecccC--------------------------------CCC-ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 019847 273 KVGELQS--------------------------------SNS-RILDLSQSPDGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 273 ~~~~~~~--------------------------------~~~-~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
.++.+.. |.. .-+.+.|...+++|+-|+-=| |++.++.++..
T Consensus 235 lvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 235 LVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred hhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeE
Confidence 7655421 111 234567888888888877543 67777776554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.6e-07 Score=78.36 Aligned_cols=208 Identities=10% Similarity=0.136 Sum_probs=140.6
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCC-----cEEEEecccCC-----
Q 019847 65 SWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK-----SIINHDVRVSN----- 134 (335)
Q Consensus 65 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~----- 134 (335)
+|++.+..++.|+.+|.|.+.+- .-+.+..++.+...+...-|.-...++|++-+.|+ .+++|+++...
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 46788999999999999988873 34555778877777434444442557888877665 48999987431
Q ss_pred eee---EEee----cCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCC-cccceeeccCCCCCeeEEEecCCCCcEEE
Q 019847 135 NVT---SCIK----AHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMS-SSKSLHRFTDHCGGVKALAWSPHQVNVLA 206 (335)
Q Consensus 135 ~~~---~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 206 (335)
.+. +... ....++.+++.+.+-+.+|+|-.+|.|..+.-+-.. .............+|+.+.+..++...+.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 122 1111 135678999999999999999999999998622110 11122223345678999999999887333
Q ss_pred EecCCCCCeEEEEECCCCce-EEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc-CCCCc
Q 019847 207 TGGGREDGCIKIWNVQKGTC-IHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ-SSNSR 283 (335)
Q Consensus 207 ~~~g~~d~~i~i~d~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~ 283 (335)
++ ....|.+|.+....+ ...+.. +.+..|..+++....++++ .+..+.+|+.+...+-..+. +|...
T Consensus 189 v~---Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-------~~e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 189 VA---TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA-------GSEFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred EE---ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe-------cCceEEEEcCCCcceeeeecCCCeEE
Confidence 33 367899999984442 333444 4578888888877745443 27889999988777666666 55543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.4e-08 Score=83.78 Aligned_cols=183 Identities=15% Similarity=0.270 Sum_probs=132.8
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT 137 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 137 (335)
.+.++|+++ .+++|+.|+.+|.|++++.+ +.. .....|... .. +|.++++|+.||+|.+..+.+.+...
T Consensus 39 ~D~is~~av--~~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAV--HDKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHh--hcceeeeccccceEEEEecC-Ccc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccce
Confidence 345677777 46789999999999999875 333 333334333 33 89999999999999999988776544
Q ss_pred EEeecCCCCEEEEEeecC-----CCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCC
Q 019847 138 SCIKAHSGEVCGLKWSNE-----GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE 212 (335)
Q Consensus 138 ~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 212 (335)
. .....++.+++++|+ .+.+++|+.-| +.++.-+-......+ ......++|.++.|.. .+++-+ .
T Consensus 108 ~--~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g---~lIAWa---n 177 (846)
T KOG2066|consen 108 Q--YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRG---NLIAWA---N 177 (846)
T ss_pred e--EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecC---cEEEEe---c
Confidence 3 246788999999997 56899999888 777764433322223 3445678999999975 477766 4
Q ss_pred CCeEEEEECCCCceEEEeecCC-------cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC
Q 019847 213 DGCIKIWNVQKGTCIHGIDAKA-------QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269 (335)
Q Consensus 213 d~~i~i~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 269 (335)
|--|++||..+++.+..++.+. -...+.|.++...++ | -..+|+|..++
T Consensus 178 d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-G-------W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-G-------WGDSVKICSIK 233 (846)
T ss_pred CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-e-------cCCeEEEEEEe
Confidence 7779999999998888776432 245678887776554 3 36788888876
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-08 Score=86.74 Aligned_cols=184 Identities=16% Similarity=0.254 Sum_probs=135.7
Q ss_pred cCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeeccccccee
Q 019847 25 GRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVA 104 (335)
Q Consensus 25 ~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~ 104 (335)
++..++.++-...+..+|+++.+..+...+.. ..|+-++ .+++++.+|...|+|.+-|.++.+.++++..|.+.|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a--~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA--SGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccC--CceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 55678888888899999999988766555432 2344444 4788999999999999999999999999999999999
Q ss_pred EeeecCCCCCEEEEeeC---------CCcEEEEecccCCeeeEEeecCCCCEEEEEeecC-CCEEEEEeCCCeEEEEEcc
Q 019847 105 TSSWNHWNGHILTSGSK---------DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNE-GNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 105 ~~~~~~~~~~~l~~~~~---------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~ 174 (335)
.+.. .|++|++++. |..|+|||++..+.+.- +.-+.++ .-+.|.|. ...+++++..|...+-|..
T Consensus 222 DfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P-I~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 222 DFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP-IQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred eeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCC-cccccCc-hhhhhcccccceEEEEecccceeecccc
Confidence 9888 7889998875 44689999997665322 2222222 44677773 4578888889999999943
Q ss_pred CCCcc-cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEE
Q 019847 175 KMSSS-KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWN 220 (335)
Q Consensus 175 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d 220 (335)
+.... ..+..+......+..++++++++. ++.+. .+|.|.+|.
T Consensus 297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~a-lafgd--~~g~v~~wa 340 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNGSGISAFDISSNGDA-LAFGD--HEGHVNLWA 340 (1118)
T ss_pred ccCCCccceeEEccCCCcceeEEecCCCce-EEEec--ccCcEeeec
Confidence 32222 223334444556999999999964 44443 899999997
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-05 Score=67.58 Aligned_cols=257 Identities=16% Similarity=0.183 Sum_probs=142.2
Q ss_pred cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeeccc--------------
Q 019847 34 LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH-------------- 99 (335)
Q Consensus 34 ~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-------------- 99 (335)
..+.+.+||+++++..++... ...+....|+|+|+.+|... ++.|.+++..+++..+.-...
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvye 96 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYE 96 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHH
T ss_pred cceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecc
Confidence 346899999999876554432 56788999999999999986 678999998877544322211
Q ss_pred ---ccceeEeeecCCCCCEEEEeeCC-CcE-----------------------------------EEEecccCCeee-EE
Q 019847 100 ---HRRVATSSWNHWNGHILTSGSKD-KSI-----------------------------------INHDVRVSNNVT-SC 139 (335)
Q Consensus 100 ---~~~v~~~~~~~~~~~~l~~~~~d-g~i-----------------------------------~~~d~~~~~~~~-~~ 139 (335)
-+.-..+-|+| +++.|+....| ..+ .++|+.+++... ..
T Consensus 97 EEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~ 175 (353)
T PF00930_consen 97 EEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDP 175 (353)
T ss_dssp HHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE--
T ss_pred ccccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeee
Confidence 12235678999 77777654322 222 233443332211 11
Q ss_pred e---ecCCCCEEEEEeecCCCEEEEE--eCCC---eEEEEEccCCCcccceeeccCCCCC---eeEEEec-CCCCcEEEE
Q 019847 140 I---KAHSGEVCGLKWSNEGNLLASG--GDDN---VVRIWERSKMSSSKSLHRFTDHCGG---VKALAWS-PHQVNVLAT 207 (335)
Q Consensus 140 ~---~~~~~~i~~~~~~~~~~~l~~~--~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~---v~~~~~~-~~~~~~~~~ 207 (335)
. ......+..+.|.++++.|+.. +.+. .+.++|..++........ ..... .....+. +++..++..
T Consensus 176 ~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e--~~~~Wv~~~~~~~~~~~~~~~~l~~ 253 (353)
T PF00930_consen 176 PNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE--TSDGWVDVYDPPHFLGPDGNEFLWI 253 (353)
T ss_dssp -HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE--ESSSSSSSSSEEEE-TTTSSEEEEE
T ss_pred ccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe--cCCcceeeecccccccCCCCEEEEE
Confidence 1 1233457788899988844433 3332 466667665433222211 12222 2355554 777777776
Q ss_pred ecCCCCC--eEEEEECCCCceEEEeecCCcEe-EEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCce
Q 019847 208 GGGREDG--CIKIWNVQKGTCIHGIDAKAQIC-GLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRI 284 (335)
Q Consensus 208 ~~g~~d~--~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i 284 (335)
.. .+| .|.+++...+.......+.-.|. -+.++++++.+.....- -......+..-++..+..+..+......-
T Consensus 254 s~--~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~-~~p~~r~lY~v~~~~~~~~~~LT~~~~~~ 330 (353)
T PF00930_consen 254 SE--RDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANG-DNPGERHLYRVSLDSGGEPKCLTCEDGDH 330 (353)
T ss_dssp EE--TTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESS-GGTTSBEEEEEETTETTEEEESSTTSSTT
T ss_pred EE--cCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecC-CCCCceEEEEEEeCCCCCeEeccCCCCCc
Confidence 65 566 46666766665443333444564 47788888776532100 00124456666666233444554443333
Q ss_pred eEeEEcCCCCEEEEEe
Q 019847 285 LDLSQSPDGLTVATAG 300 (335)
Q Consensus 285 ~~~~~~~~~~~l~~~~ 300 (335)
..+.|||++++++-..
T Consensus 331 ~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 331 YSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEEE-TTSSEEEEEE
T ss_pred eEEEECCCCCEEEEEE
Confidence 6899999999887543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.9e-08 Score=83.61 Aligned_cols=186 Identities=15% Similarity=0.193 Sum_probs=131.6
Q ss_pred ccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEe
Q 019847 15 EDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR 94 (335)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 94 (335)
....+.|++++...++.++.+|.|++++.+..- ...+ .|... ..+|.++++|+.||+|.|-.+-+.+...
T Consensus 38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-~~~~---~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQGNP-KTNF---DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhhHHHHHHhhcceeeeccccceEEEEecCCcc-cccc---ccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 344577788888888899999999999976542 1111 23332 6689999999999999999998888776
Q ss_pred eecccccceeEeeecCC----CCCEEEEeeCCCcEEEEecccCCee-eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEE
Q 019847 95 NLEGHHRRVATSSWNHW----NGHILTSGSKDKSIINHDVRVSNNV-TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVR 169 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 169 (335)
.+. ...++.+++++|. ..+.+++|+.-| +.++.-+--+.. ...+....++|.++.|. |+++|-++.+| |+
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VK 182 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cE
Confidence 665 5578999999983 367899999998 777764322211 22356678999999997 67999988776 99
Q ss_pred EEEccCCCcccceeeccCC------CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC
Q 019847 170 IWERSKMSSSKSLHRFTDH------CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 170 iwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 223 (335)
+||+..... +..+... ......+.|.++. .++.| ...+|++..++.
T Consensus 183 vyd~~~~~~---l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIG---W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQR---LTNIPPPSQSVRPELFPPHLHWQDED--RLVIG---WGDSVKICSIKK 234 (846)
T ss_pred EEeccccce---eeccCCCCCCCCcccCCCceEecCCC--eEEEe---cCCeEEEEEEec
Confidence 999876433 2222211 1123467888876 34444 566788888873
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.3e-08 Score=84.28 Aligned_cols=180 Identities=20% Similarity=0.290 Sum_probs=135.1
Q ss_pred CCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEE
Q 019847 70 AKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCG 149 (335)
Q Consensus 70 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~ 149 (335)
+..++-|+-...+..+|+.+.+..+...-....++-++. +++.+++|...|+|.+-|.++.+ ....+..|.+.|..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGSISD 222 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCc-eeeeeeccccceee
Confidence 456677777778899999988887776655556777776 78999999999999999998655 46778899999987
Q ss_pred EEeecCCCEEEEEeC---------CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEE
Q 019847 150 LKWSNEGNLLASGGD---------DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWN 220 (335)
Q Consensus 150 ~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d 220 (335)
+.. .|+.|++++. |..|++||+|......++.. +.++ .-+.|+|.-...+++++ ..|...+-|
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---~~~P-~flrf~Psl~t~~~V~S--~sGq~q~vd 294 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---PYGP-QFLRFHPSLTTRLAVTS--QSGQFQFVD 294 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc---ccCc-hhhhhcccccceEEEEe--cccceeecc
Confidence 665 5789999875 45689999998665555443 3232 45778887666666666 789999998
Q ss_pred ---CCCC--ceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEE
Q 019847 221 ---VQKG--TCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK 267 (335)
Q Consensus 221 ---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 267 (335)
+.+. ...........+..+++++++..++.| ..+|.|.+|.
T Consensus 295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafg------d~~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFG------DHEGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccCCCcceeEEecCCCceEEEe------cccCcEeeec
Confidence 3332 112222334559999999999999988 6699999997
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.8e-06 Score=71.80 Aligned_cols=279 Identities=14% Similarity=0.096 Sum_probs=159.2
Q ss_pred CCceEEEecCCeEEEEEecCCceeeEEeecCC----CCCce--EEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeeccc
Q 019847 26 RNNVLAVALGPVLFLWKWENGKVKKLLQVPGE----DDYPT--SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99 (335)
Q Consensus 26 ~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~----~~~v~--~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 99 (335)
++.+++++.++.++-.|..+++..-....... ...+. .+... ++..++.++.+|.|.-+|.++|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 46677777889999999999987554443221 00010 11111 2267888889999999999999998877643
Q ss_pred ccc-----e-eEeeecCCCCCEEEEee---------CCCcEEEEecccCCeeeEEeecCCC-------------------
Q 019847 100 HRR-----V-ATSSWNHWNGHILTSGS---------KDKSIINHDVRVSNNVTSCIKAHSG------------------- 145 (335)
Q Consensus 100 ~~~-----v-~~~~~~~~~~~~l~~~~---------~dg~i~~~d~~~~~~~~~~~~~~~~------------------- 145 (335)
... + ....+ .+..++.++ .+|.+..+|..+++..-+.......
T Consensus 140 ~~~~~~~~i~ssP~v---~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 140 DQVPPGYTMTGAPTI---VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred CCcCcceEecCCCEE---ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 321 1 11122 224455554 3678899999887765443221110
Q ss_pred CE-EEEEeecCCCEEEEEeCCC------------------eEEEEEccCCCcccceeeccCCC--------CCe-eEEEe
Q 019847 146 EV-CGLKWSNEGNLLASGGDDN------------------VVRIWERSKMSSSKSLHRFTDHC--------GGV-KALAW 197 (335)
Q Consensus 146 ~i-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~--------~~v-~~~~~ 197 (335)
.+ ...++.+.+..++.++.++ .|.-+|.++++..-..+. ..+. .++ ..+.
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~-~~~~~~~~~~~s~p~~~~~~- 294 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQT-TPHDLWDYDGPNQPSLADIK- 294 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeC-CCCCCcccccCCCCeEEecc-
Confidence 01 1234445566777777665 688888776543222111 1111 111 0110
Q ss_pred cCCCC--cEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeee-e-----------eeecCCCeE
Q 019847 198 SPHQV--NVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG-F-----------SASGDGNKL 263 (335)
Q Consensus 198 ~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~i 263 (335)
.-++. .++..++ .+|.+...|.++|+.+-..+... ..+..+| ..+..+.. . .....+|.+
T Consensus 295 ~~~g~~~~~V~~g~--~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l 368 (488)
T cd00216 295 PKDGKPVPAIVHAP--KNGFFYVLDRTTGKLISARPEVE--QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGL 368 (488)
T ss_pred ccCCCeeEEEEEEC--CCceEEEEECCCCcEeeEeEeec--cccccCC--ceEEEccccccccCcccccCCCCCCCceEE
Confidence 01222 2455544 79999999999999987765321 1233344 22222100 0 011346888
Q ss_pred EEEECCCCceeecccCCC--------Cce--eEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 264 CLWKYPNMTKVGELQSSN--------SRI--LDLSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 264 ~i~d~~~~~~~~~~~~~~--------~~i--~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
.-.|..+++.+-+..... .+. ..+.. .+..|+.++.||.++.+|..+++..-+
T Consensus 369 ~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 369 AALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred EEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeE
Confidence 899999998876654321 111 11222 456888899999999999988876543
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-06 Score=79.05 Aligned_cols=204 Identities=16% Similarity=0.265 Sum_probs=135.7
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEec----ccC
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDV----RVS 133 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~----~~~ 133 (335)
...|.++.|..+++.++.+...|.|.+-|.++.... ....-...|.+++|+| +...++..+..+++.+-+- -..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhc
Confidence 468999999999999999999999999998876533 2333567899999999 9999999888888776543 101
Q ss_pred Cee------------------eEEeec---------------------CCCCEEEEEeecCCCEEEEE-----eCCCeEE
Q 019847 134 NNV------------------TSCIKA---------------------HSGEVCGLKWSNEGNLLASG-----GDDNVVR 169 (335)
Q Consensus 134 ~~~------------------~~~~~~---------------------~~~~i~~~~~~~~~~~l~~~-----~~dg~i~ 169 (335)
+++ ...+.+ ....=+++.|--||+++|+. .....|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 100 001110 01112358999999999984 2237899
Q ss_pred EEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEE----eecCC-cEeEEEeCCC
Q 019847 170 IWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHG----IDAKA-QICGLEWNRH 244 (335)
Q Consensus 170 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~----~~~~~-~~~~~~~~~~ 244 (335)
+||-+ +. .-..-....+.-.+++|-|.|..+.+...-..|+.|.+|. ++|-.-.. ++... ++..++|+.+
T Consensus 226 V~drE-g~---Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 226 VYDRE-GA---LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred Eeccc-ch---hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeecCC
Confidence 99965 11 1111111223345799999997776666544677899997 44433332 22333 4899999999
Q ss_pred CceeeeeeeeeeecCCCeEEEEECCCC
Q 019847 245 HKEILSGHGFSASGDGNKLCLWKYPNM 271 (335)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~i~d~~~~ 271 (335)
+..+++-. .......|++|-..+.
T Consensus 301 sdiLAv~~---~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 301 SDILAVVT---SNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCceeeee---cccccceEEEEEecCe
Confidence 99998732 1234555999988764
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=55.00 Aligned_cols=37 Identities=35% Similarity=0.865 Sum_probs=34.8
Q ss_pred eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE
Q 019847 136 VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172 (335)
Q Consensus 136 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 172 (335)
+...+.+|.+.|++++|+|++++|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4677889999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.5e-06 Score=72.92 Aligned_cols=217 Identities=10% Similarity=0.030 Sum_probs=127.1
Q ss_pred CCeEEEEEecCCceeeEEeecCCCCCceEEEEc--CCCCEEEEEE------------------CCCcEEEEeCCCceeEe
Q 019847 35 GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS--HDAKTLAVGY------------------MDSKLQLWDAETSKLVR 94 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~------------------~dg~i~iw~~~~~~~~~ 94 (335)
+..|-..+++.-+..++..++. ...+..++|- |+..|+++++ ..+.+.+.|.++.+...
T Consensus 151 n~Rvari~l~~~~~~~i~~iPn-~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~ 229 (635)
T PRK02888 151 NTRVARIRLDVMKCDKITELPN-VQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAW 229 (635)
T ss_pred CcceEEEECccEeeceeEeCCC-ccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEEE
Confidence 4466666666666666665543 2223333332 3333433332 24567777877777766
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCC----CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKD----KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
++... .....+.+++ ++.++++.+.+ .++...+...... ...+. -..+ -++.++|++... .++.|.+
T Consensus 230 qV~Vd-gnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~-~vvfn--i~~i--ea~vkdGK~~~V--~gn~V~V 300 (635)
T PRK02888 230 QVMVD-GNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDW-VVVFN--IARI--EEAVKAGKFKTI--GGSKVPV 300 (635)
T ss_pred EEEeC-CCcccceECC-CCCEEEEeccCcccCcceeeeccccCce-EEEEc--hHHH--HHhhhCCCEEEE--CCCEEEE
Confidence 66533 3556778888 78877777532 1233322221111 00000 0000 023456776665 3678999
Q ss_pred EEccCCC--cccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce------------EEEeecCCcE
Q 019847 171 WERSKMS--SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC------------IHGIDAKAQI 236 (335)
Q Consensus 171 wd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~------------~~~~~~~~~~ 236 (335)
.|.++.. ....+..+ .-......+.++|||+++++++. .+..+.++|+++.+. +.+.+.....
T Consensus 301 ID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVank--lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP 377 (635)
T PRK02888 301 VDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGK--LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP 377 (635)
T ss_pred EECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCC--CCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc
Confidence 9977510 01222222 23455778999999999999876 899999999988653 4445555556
Q ss_pred eEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC
Q 019847 237 CGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
...+|+++|....+- --|..|..|++.+
T Consensus 378 LHTaFDg~G~aytsl------f~dsqv~kwn~~~ 405 (635)
T PRK02888 378 LHTAFDGRGNAYTTL------FLDSQIVKWNIEA 405 (635)
T ss_pred ceEEECCCCCEEEeE------eecceeEEEehHH
Confidence 678899998744433 3488999999876
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.9e-06 Score=66.40 Aligned_cols=211 Identities=13% Similarity=0.170 Sum_probs=139.1
Q ss_pred ceeEeeecCCCCCEEEEeeCCCc-EEEEecccCCeeeEEeecCCCCE--EEEEeecCCCEEEEEeC-----CCeEEEEEc
Q 019847 102 RVATSSWNHWNGHILTSGSKDKS-IINHDVRVSNNVTSCIKAHSGEV--CGLKWSNEGNLLASGGD-----DNVVRIWER 173 (335)
Q Consensus 102 ~v~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~-----dg~i~iwd~ 173 (335)
....++.+|.....++.+-.-|+ ..+||.+++..... +....+.- -.-.|++||++|++.-. .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~-~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQR-LWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeE-EcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 34467777867777777777774 67899987765433 32222221 13679999999998643 478999998
Q ss_pred cCCCcccceeeccCCCCCeeEEEecCCCCcEEEEec---------------CCCCCeEEEEECCCCceEEEeec-----C
Q 019847 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG---------------GREDGCIKIWNVQKGTCIHGIDA-----K 233 (335)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------------g~~d~~i~i~d~~~~~~~~~~~~-----~ 233 (335)
.. ..+.+..+..+.-....+.+.||++.|++.-+ .+++-++.+.|..+|+.+..... .
T Consensus 85 ~~--~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 85 AR--GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ 162 (305)
T ss_pred cC--CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence 73 35567777777666778999999977777654 22445677788889998877543 3
Q ss_pred CcEeEEEeCCCCceeeeeeeeeeecCC--CeEEEEECCCCceeecc-------cCCCCceeEeEEcCCCCEEEEE-eCCC
Q 019847 234 AQICGLEWNRHHKEILSGHGFSASGDG--NKLCLWKYPNMTKVGEL-------QSSNSRILDLSQSPDGLTVATA-GADE 303 (335)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~-~~dg 303 (335)
..+..+++.++|..++.... -.-..+ --+.+++. ++.+..+ ..-.+.+-+|++++++.++++. -.-|
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~-qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQY-QGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred cceeeEEecCCCcEEEEEec-CCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 36899999999887665432 100011 12333332 2222222 2234578999999999877555 4678
Q ss_pred cEEEEecCCCCCCCC
Q 019847 304 TIRFWEAFGPSGDED 318 (335)
Q Consensus 304 ~v~iw~~~~~~~~~~ 318 (335)
.+.+||..++.....
T Consensus 240 ~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 240 RVAVWDAATGRLLGS 254 (305)
T ss_pred EEEEEECCCCCEeec
Confidence 899999988765543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-05 Score=64.40 Aligned_cols=235 Identities=14% Similarity=0.140 Sum_probs=149.5
Q ss_pred eEEEEEecCCceeeEEeecCC-C----CCceEEEEcCCCCEEEEEE--CCCcEEEEeCCCceeEeeecccccceeEeeec
Q 019847 37 VLFLWKWENGKVKKLLQVPGE-D----DYPTSVSWSHDAKTLAVGY--MDSKLQLWDAETSKLVRNLEGHHRRVATSSWN 109 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~ 109 (335)
.|.+||..+-.....+.++.- . ......+++.|++++++.. -.-+|.|.|+..++.+.++.. .++.. .|
T Consensus 68 vv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~--iy- 143 (342)
T PF06433_consen 68 VVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGCWL--IY- 143 (342)
T ss_dssp EEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSEEE--EE-
T ss_pred EEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCEEE--EE-
Confidence 799999999988777777652 1 2335578899999988864 345799999999999887763 22222 22
Q ss_pred CCCCCEEEEeeCCCcEEEEecccCCeeeEEe----ecCCCCE-EEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceee
Q 019847 110 HWNGHILTSGSKDKSIINHDVRVSNNVTSCI----KAHSGEV-CGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHR 184 (335)
Q Consensus 110 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 184 (335)
|..+.-|.+-+.||.+.-..+....+..+.. .....++ ..-++...+..++.-+.+|.|+--|+.... .+....
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~ 222 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGKP 222 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEEE
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-ccccCc
Confidence 3345678899999999999998554433221 1112222 233344455566667889999998887543 122222
Q ss_pred ccC----------CCCCeeEEEecCCCCcEEEEec-C----CCC--CeEEEEECCCCceEEEeecCCcEeEEEeCCCCce
Q 019847 185 FTD----------HCGGVKALAWSPHQVNVLATGG-G----RED--GCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKE 247 (335)
Q Consensus 185 ~~~----------~~~~v~~~~~~~~~~~~~~~~~-g----~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (335)
+.- -.+.-.-+++++....|++.-. | ..| ..|.++|+.+++.+..++...++.++..+.+.+=
T Consensus 223 ~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P 302 (342)
T PF06433_consen 223 WSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKP 302 (342)
T ss_dssp EESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-
T ss_pred ccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCc
Confidence 211 1223345777776655555421 0 011 2588889999999999998888999999998875
Q ss_pred eeeeeeeeeecCCCeEEEEECCCCceeecccCC
Q 019847 248 ILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 248 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 280 (335)
++.+ ....++.+.+||..+++++.++..-
T Consensus 303 ~L~~----~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 303 LLYA----LSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEEE----EETTTTEEEEEETTT--EEEEE---
T ss_pred EEEE----EcCCCCeEEEEeCcCCcEEeehhcc
Confidence 5433 2256899999999999999887643
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.5e-06 Score=64.53 Aligned_cols=196 Identities=14% Similarity=0.192 Sum_probs=114.9
Q ss_pred EEeecCCCCCceEEEEcCCCC-EEEEEECCCcEEEEeCCCceeEeeeccc-ccceeEeeecCCCCCEEEEeeCCCcEEEE
Q 019847 51 LLQVPGEDDYPTSVSWSHDAK-TLAVGYMDSKLQLWDAETSKLVRNLEGH-HRRVATSSWNHWNGHILTSGSKDKSIINH 128 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~~~ 128 (335)
...+++-...+..++|+|+.+ ++++....+.|..++. +|+.++.+.-. .+..-.+++.. ++.++++.-.++.+.++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIF 91 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEE
Confidence 345666667799999999766 4555667788888886 47887776533 35577788875 66666666678999999
Q ss_pred ecccCCee-----eEEe-----ecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccce--------eeccCCCC
Q 019847 129 DVRVSNNV-----TSCI-----KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL--------HRFTDHCG 190 (335)
Q Consensus 129 d~~~~~~~-----~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~ 190 (335)
++...... ...+ ..+...+-.++|+|.++.|+.+-+..-..+|.++.......+ ........
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 98432211 1111 124456899999998777777776666677776541100011 11112334
Q ss_pred CeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC----------cEeEEEeCCCCceeeee
Q 019847 191 GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA----------QICGLEWNRHHKEILSG 251 (335)
Q Consensus 191 ~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 251 (335)
.+.++.++|....+++.+. .+..|..+| .+|+.+..+.... ..-.++++++|...+++
T Consensus 172 d~S~l~~~p~t~~lliLS~--es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSD--ESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp ---EEEEETTTTEEEEEET--TTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred cccceEEcCCCCeEEEEEC--CCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 5789999999888888876 899999999 6788877665432 57889999999776664
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.7e-06 Score=75.92 Aligned_cols=206 Identities=9% Similarity=0.149 Sum_probs=136.8
Q ss_pred ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc----C
Q 019847 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS----K 175 (335)
Q Consensus 100 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~----~ 175 (335)
...|.++.|.. +.+.++.+...|.|.+-|..+.. ......-...|.+++|+||+..++..+.++++.+-+-. .
T Consensus 68 d~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLA-DTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CcceEEEEEec-ccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 35899999998 88889999999999999877544 34444567889999999999999999988887765421 0
Q ss_pred CCc----------------ccceeeccC---------------------CCCCeeEEEecCCCCcEEEEecC-CCC-CeE
Q 019847 176 MSS----------------SKSLHRFTD---------------------HCGGVKALAWSPHQVNVLATGGG-RED-GCI 216 (335)
Q Consensus 176 ~~~----------------~~~~~~~~~---------------------~~~~v~~~~~~~~~~~~~~~~~g-~~d-~~i 216 (335)
... ++.-..+.+ ..+.=+.++|--||++++++.-. ..+ +.|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 000 000001111 01112358999999765553210 023 799
Q ss_pred EEEECCCCceEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc---eeecccCCCCceeEeEEcCC
Q 019847 217 KIWNVQKGTCIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT---KVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 217 ~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~ 292 (335)
++||-+ |..-..-+ ....-.+++|-|.|..+++-. ..++++.|.+|.-+..+ ....+.....++..++|+.+
T Consensus 225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq---~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQ---CKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred EEeccc-chhhcccCcccccccceeecCCCCeEeeee---ecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 999976 54433222 234567899999999887743 33567789999854322 22223333345899999999
Q ss_pred CCEEEE---EeCCCcEEEEecCC
Q 019847 293 GLTVAT---AGADETIRFWEAFG 312 (335)
Q Consensus 293 ~~~l~~---~~~dg~v~iw~~~~ 312 (335)
+..|++ ......|++|-+.+
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CCceeeeecccccceEEEEEecC
Confidence 999988 55555699998765
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-05 Score=60.24 Aligned_cols=140 Identities=12% Similarity=0.061 Sum_probs=91.0
Q ss_pred CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEe
Q 019847 27 NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATS 106 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 106 (335)
..++.++..+.+.--|..+|++.-...+. ..|.+-+.- -|++++.|+..|.+++.+.++|+....+.... .|.+-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg---~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~ 98 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG---VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVR 98 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhC---ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh-hhccc
Confidence 45666777888999999999876554432 233333332 57789999999999999999998888776433 33322
Q ss_pred -eecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 107 -SWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 107 -~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
...+ ++.++..|+.|++.+..|.++...+.+. +-..+...+-+..|-...|..+...|.+.--..
T Consensus 99 a~~d~-~~glIycgshd~~~yalD~~~~~cVyks-kcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 99 AQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKS-KCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTK 164 (354)
T ss_pred eEEcC-CCceEEEecCCCcEEEecccccceEEec-ccCCceeccceecCCCceEEEEeccceEEEEcc
Confidence 2334 8999999999999999999977765542 212222233344552333444445565544443
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.9e-06 Score=72.12 Aligned_cols=289 Identities=15% Similarity=0.187 Sum_probs=163.7
Q ss_pred CCcccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 12 YLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
..+.....+|++-..+.+..+++.|.+++|+-..+++.. ++..+....+..+..+++..++|+|+..|.|.++-++.+.
T Consensus 31 ~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 31 FFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred cCcceEEEEEeecCCceEEEecccceEEEEecCchhhhc-ccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 334566778888888889999999999999988877543 3333445566777889999999999999999999887643
Q ss_pred eEe-----ee-cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC---eeeEEeecCCCCEEEEEeecCCCEEEEE
Q 019847 92 LVR-----NL-EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN---NVTSCIKAHSGEVCGLKWSNEGNLLASG 162 (335)
Q Consensus 92 ~~~-----~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (335)
+.. .. +.|...|++++|++ ++..+++|...|.|..-.+.... ...+.+....+.|..+.+.. +.+|++
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~~LLVS- 186 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-SYLLVS- 186 (726)
T ss_pred CCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc-ceehHh-
Confidence 211 11 23778999999999 99999999999999988887521 11233344567777777653 333333
Q ss_pred eCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCC----CCcEEEEecCCCCCeEEEEECC-CCceEEEeecC----
Q 019847 163 GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH----QVNVLATGGGREDGCIKIWNVQ-KGTCIHGIDAK---- 233 (335)
Q Consensus 163 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~g~~d~~i~i~d~~-~~~~~~~~~~~---- 233 (335)
+.- ...+++.+... .+.+..-....-.-...+|-|. .+-.+.++ .-..|+|... .|+.+.+....
T Consensus 187 tl~-r~~Lc~tE~et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca----RPG~RlWead~~G~V~~Thqfk~ala 260 (726)
T KOG3621|consen 187 TLT-RCILCQTEAET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA----RPGLRLWEADFAGEVIKTHQFKDALA 260 (726)
T ss_pred hhh-hhheeecchhH-HHHhcCCCcCCccccceEEeeccccCCCceEEEe----cCCCceEEeecceeEEEeeehhhhhc
Confidence 322 23445544322 1112111111111234455554 33344443 3446777654 24544444311
Q ss_pred ---Cc---EeEEEeCCCCceeeeee-------------eeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCC
Q 019847 234 ---AQ---ICGLEWNRHHKEILSGH-------------GFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGL 294 (335)
Q Consensus 234 ---~~---~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 294 (335)
.+ +.+.. +|+...+..+. .+.-+-.+-.|+|+|..+.+.+.-... ...|.+++- .++
T Consensus 261 ~~p~p~i~~~s~e-sp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~Giyv~d~~~~~v~l~se~-~~DI~dVs~--~~n 336 (726)
T KOG3621|consen 261 RPPAPEIPIRSLE-SPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVGIYVFDSNNSQVYLWSEG-GHDILDVSH--CGN 336 (726)
T ss_pred cCCCCcccCCCcC-CccccCCCCCccccccceeEEeecceEEEeecceEEEEEeccceEEEeecC-CCceeEEee--cCc
Confidence 11 11111 22221111110 000011233478888766555433322 233555544 344
Q ss_pred EEEEEeCCCcEEEEecCCCC
Q 019847 295 TVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 295 ~l~~~~~dg~v~iw~~~~~~ 314 (335)
-|+.-..|+.+++..+...+
T Consensus 337 eiFvL~~d~~l~~~sv~s~q 356 (726)
T KOG3621|consen 337 EIFVLNLDRGLKVESVASRQ 356 (726)
T ss_pred eEEEEecCCceeEEEeehhH
Confidence 55556667777777666543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5e-06 Score=73.06 Aligned_cols=204 Identities=9% Similarity=0.082 Sum_probs=135.9
Q ss_pred cceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCC-ceEEEEcCCCCEEEEEECCC-----cEEEEeCCCc-
Q 019847 18 YSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDY-PTSVSWSHDAKTLAVGYMDS-----KLQLWDAETS- 90 (335)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~- 90 (335)
.+.|++-+.+.++.++.+|.|.+.+-.- + ....+..+... |..+-...+..+|++.+.|+ .++||+++.-
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~-~--~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSF-Q--LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccc-e--eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 6777777778888899999998887322 2 12334455555 55554444556888877654 4899998643
Q ss_pred -----eeE---eeec----ccccceeEeeecCCCCCEEEEeeCCCcEEEEecc---cCCeeeEEeecCCCCEEEEEeecC
Q 019847 91 -----KLV---RNLE----GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR---VSNNVTSCIKAHSGEVCGLKWSNE 155 (335)
Q Consensus 91 -----~~~---~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~---~~~~~~~~~~~~~~~i~~~~~~~~ 155 (335)
.++ +.+. ....++.+++.+. +-..+++|-.+|.|..+.=+ ..............+|+.+++..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 222 1111 1356788888888 78999999999999988532 111112223335678999999988
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee
Q 019847 156 GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID 231 (335)
Q Consensus 156 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 231 (335)
+..++....-..|.+|.+.. .. ........|..+..|..+++....+++++ +..+.+||.....+-..+.
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~g-r~-p~~~~ld~~G~~lnCss~~~~t~qfIca~----~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSG-RT-PSLKVLDNNGISLNCSSFSDGTYQFICAG----SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEecceeEEEEecC-CC-cceeeeccCCccceeeecCCCCccEEEec----CceEEEEcCCCcceeeeec
Confidence 87734444456799999883 22 33455667788899999998776566654 6789999987655555554
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.2e-05 Score=68.64 Aligned_cols=244 Identities=11% Similarity=0.096 Sum_probs=137.4
Q ss_pred CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC--CCCEEEEEE---------CCCcEEEEeCCCceeEee
Q 019847 27 NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH--DAKTLAVGY---------MDSKLQLWDAETSKLVRN 95 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~---------~dg~i~iw~~~~~~~~~~ 95 (335)
+.+++++.++.|+-+|.++++..-......+...-..+.-+| .+..++.++ .+|.+..+|.++|+.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 778888889999999999999866655543310001111122 234555554 367899999999998877
Q ss_pred ecccccc--------------------e-eEeeecCCCCCEEEEeeCCC------------------cEEEEecccCCee
Q 019847 96 LEGHHRR--------------------V-ATSSWNHWNGHILTSGSKDK------------------SIINHDVRVSNNV 136 (335)
Q Consensus 96 ~~~~~~~--------------------v-~~~~~~~~~~~~l~~~~~dg------------------~i~~~d~~~~~~~ 136 (335)
++..... + ....+.+ .+..++.++.++ .+.-+|..+++..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 6542110 0 0123333 456777777665 7889999888765
Q ss_pred eEEeecCCC-----CEEEEEee----cCCC---EEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcE
Q 019847 137 TSCIKAHSG-----EVCGLKWS----NEGN---LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNV 204 (335)
Q Consensus 137 ~~~~~~~~~-----~i~~~~~~----~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 204 (335)
-+....+.. ......+. -++. .++.++.+|.+...|.++++. +-..... ...+..+| + .+
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~---~W~~~~~---~~~~~~~~-~-~v 341 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL---ISARPEV---EQPMAYDP-G-LV 341 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE---eeEeEee---ccccccCC-c-eE
Confidence 543222111 00000111 1232 677888899999999887643 2221100 11123333 1 22
Q ss_pred EEEec---------------CCCCCeEEEEECCCCceEEEeecCCcEeEEEe---CCCCceeeeeeeeeeecCCCeEEEE
Q 019847 205 LATGG---------------GREDGCIKIWNVQKGTCIHGIDAKAQICGLEW---NRHHKEILSGHGFSASGDGNKLCLW 266 (335)
Q Consensus 205 ~~~~~---------------g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~i~ 266 (335)
++... ...+|.+.-.|+.+|+.+-+.+.........+ ...+..++.+..+.+++.+|.++.+
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~al 421 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAF 421 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEE
Confidence 22110 11468899999999998877765411000000 0001112222333444779999999
Q ss_pred ECCCCceeecccC
Q 019847 267 KYPNMTKVGELQS 279 (335)
Q Consensus 267 d~~~~~~~~~~~~ 279 (335)
|.++++.+.+.+.
T Consensus 422 d~~tG~~lW~~~~ 434 (488)
T cd00216 422 DATTGKELWKFRT 434 (488)
T ss_pred ECCCCceeeEEEC
Confidence 9999999887664
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.8e-07 Score=75.73 Aligned_cols=99 Identities=15% Similarity=0.237 Sum_probs=75.9
Q ss_pred EEEEEecCCceeeE--EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCE
Q 019847 38 LFLWKWENGKVKKL--LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHI 115 (335)
Q Consensus 38 i~vw~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 115 (335)
-.+|++..+++.+. ..+ .....|.|++++|+.+.|+.|+.||+|.+||...+.. .+....-.++.++|+| ++.+
T Consensus 238 ~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp-~gai 313 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHP-DGAI 313 (545)
T ss_pred EEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcC-CCcE
Confidence 46677666654432 222 4577899999999999999999999999999876533 2333556789999999 9999
Q ss_pred EEEeeCCCcEEEEecccCCeeeEEe
Q 019847 116 LTSGSKDKSIINHDVRVSNNVTSCI 140 (335)
Q Consensus 116 l~~~~~dg~i~~~d~~~~~~~~~~~ 140 (335)
+++|+..|.+.+||+.-.....+.+
T Consensus 314 ~~V~s~qGelQ~FD~ALspi~~qLl 338 (545)
T PF11768_consen 314 FVVGSEQGELQCFDMALSPIKMQLL 338 (545)
T ss_pred EEEEcCCceEEEEEeecCccceeec
Confidence 9999999999999997554434433
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.6e-05 Score=61.94 Aligned_cols=280 Identities=16% Similarity=0.131 Sum_probs=137.6
Q ss_pred CCceEEEec---CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccc
Q 019847 26 RNNVLAVAL---GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRR 102 (335)
Q Consensus 26 ~~~~~~~~~---~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 102 (335)
+++++.++. ...+++.|+.+++..++...++ .......++|+.+.++-......++-.|+++.+....+.....-
T Consensus 47 G~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g--~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~ 124 (386)
T PF14583_consen 47 GRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG--DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDW 124 (386)
T ss_dssp S-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTE
T ss_pred CCEEEEEeccCCCcceEEEEcccCEEEECccCCC--CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccc
Confidence 346666553 4578888899998766655332 22335667898888876656678999999998766656555555
Q ss_pred eeEeeecC-CCCCEEEEeeC----------------------CCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCE
Q 019847 103 VATSSWNH-WNGHILTSGSK----------------------DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNL 158 (335)
Q Consensus 103 v~~~~~~~-~~~~~l~~~~~----------------------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 158 (335)
+-...|.. .++..++..-. ...|.-.|+.+++ ...+......+..+.|+| +...
T Consensus 125 ~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~~wlgH~~fsP~dp~l 202 (386)
T PF14583_consen 125 KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDTDWLGHVQFSPTDPTL 202 (386)
T ss_dssp EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-EEEEEEETTEEEE
T ss_pred ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecCccccCcccCCCCCCE
Confidence 55566642 24444432211 1234445555443 233333456678899999 5556
Q ss_pred EEEEeC---CC-eEEEEEccCCCcccceeeccCC--CCCeeEEEecCCCCcEEEEec--CCCCCeEEEEECCCCceEEEe
Q 019847 159 LASGGD---DN-VVRIWERSKMSSSKSLHRFTDH--CGGVKALAWSPHQVNVLATGG--GREDGCIKIWNVQKGTCIHGI 230 (335)
Q Consensus 159 l~~~~~---dg-~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~--g~~d~~i~i~d~~~~~~~~~~ 230 (335)
|+.|-+ +. .-|||-++..... ...+..+ ...+.-=-|.|+|..+...+. |..+..|.-+|+.+++.....
T Consensus 203 i~fCHEGpw~~Vd~RiW~i~~dg~~--~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 203 IMFCHEGPWDLVDQRIWTINTDGSN--VKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp EEEEE-S-TTTSS-SEEEEETTS-----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred EEEeccCCcceeceEEEEEEcCCCc--ceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence 666553 22 2367776643221 2222222 223444468999988776542 224667888899988765433
Q ss_pred ecCCcEeEEEeCCCCceeeeeeee----eee-------cCCCeEEEEECCCCceeec---------ccCCCC-ceeEeEE
Q 019847 231 DAKAQICGLEWNRHHKEILSGHGF----SAS-------GDGNKLCLWKYPNMTKVGE---------LQSSNS-RILDLSQ 289 (335)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~-------~~~~~i~i~d~~~~~~~~~---------~~~~~~-~i~~~~~ 289 (335)
+.+ ....+..+++|++++- .+- .+. ..+--|+++++..++.... +.++.. .=....|
T Consensus 281 ~~p-~~~H~~ss~Dg~L~vG-DG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~F 358 (386)
T PF14583_consen 281 EMP-WCSHFMSSPDGKLFVG-DGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSF 358 (386)
T ss_dssp EE--SEEEEEE-TTSSEEEE-EE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE
T ss_pred eCC-ceeeeEEcCCCCEEEe-cCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCcc
Confidence 333 4556777888887653 210 000 1123577788877654311 111111 1135789
Q ss_pred cCCCCEEE-EEeCCCcEEEEecCCC
Q 019847 290 SPDGLTVA-TAGADETIRFWEAFGP 313 (335)
Q Consensus 290 ~~~~~~l~-~~~~dg~v~iw~~~~~ 313 (335)
+|||++++ ++...|...||-++-+
T Consensus 359 SPDgk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 359 SPDGKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp -TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred CCCCCEEEEECCCCCCccEEEEeCc
Confidence 99998765 5567888888866543
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.8e-09 Score=87.90 Aligned_cols=202 Identities=21% Similarity=0.310 Sum_probs=138.5
Q ss_pred cccccceeeeecCC---ceEE-EecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC-CCCEEEEEE----CCCcEEE
Q 019847 14 MEDYYSKVIDWGRN---NVLA-VALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH-DAKTLAVGY----MDSKLQL 84 (335)
Q Consensus 14 ~~~~~~~~~~~~~~---~~~~-~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~i~i 84 (335)
.+..+..|+++.-+ -+++ +..+|.|.+-.+........-..++|....++++|++ |.+.||+|- .|..+.|
T Consensus 54 sdtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 54 SDTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred ccCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence 34556778887642 3444 5578999999887654432334467889999999998 677888874 4678999
Q ss_pred EeCCCc--eeEe--eecc-cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCE
Q 019847 85 WDAETS--KLVR--NLEG-HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNL 158 (335)
Q Consensus 85 w~~~~~--~~~~--~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 158 (335)
||+.++ .+.. .+.. ......+++|.. +.+++.+|.....+.++|++....... .-....+..+...| .+++
T Consensus 134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~--svnTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVS--SVNTKYVQGITVDPFSPNY 210 (783)
T ss_pred eecccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhhhh--hhhhhhcccceecCCCCCc
Confidence 999876 2221 2222 345566888985 889999999999999999984322111 12334566778888 7888
Q ss_pred EEEEeCCCeEEEEE-ccCCCcccceeeccCC----CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC
Q 019847 159 LASGGDDNVVRIWE-RSKMSSSKSLHRFTDH----CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ 222 (335)
Q Consensus 159 l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 222 (335)
+++-. ||.|.+|| .++-+ .++...... ...+..++|.|...-++++.. ...++|+++|+.
T Consensus 211 ~cs~~-dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~-RdS~tIrlydi~ 275 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLS-RDSITIRLYDIC 275 (783)
T ss_pred eeccc-cCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhc-cCcceEEEeccc
Confidence 88766 99999999 33322 223222222 234899999998877777764 356899999985
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.6e-06 Score=70.62 Aligned_cols=186 Identities=18% Similarity=0.234 Sum_probs=117.8
Q ss_pred CCCCceEEEEcCCCCEEEEEE---CC-CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCc--EEEEec
Q 019847 57 EDDYPTSVSWSHDAKTLAVGY---MD-SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKS--IINHDV 130 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~---~d-g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~~~d~ 130 (335)
....+..-+|+|+++.++... .. ..+.++++++++...... ..+.-...+|+|....++++...||. |.++|+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 345677788999998776553 22 469999999887665554 44555667899944445556667775 555566
Q ss_pred ccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC-CCe--EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEE
Q 019847 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD-DNV--VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207 (335)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 207 (335)
.... ...+....+.-..=.|+|||+.++..+. .|. |.++|.+.... ...+. ....-..-.|+|+|++++..
T Consensus 270 ~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~--~~~~~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 270 DGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTF--SGGGNSNPVWSPDGDKIVFE 343 (425)
T ss_pred CCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeec--cCCCCcCccCCCCCCEEEEE
Confidence 5444 2224333343446789999998887764 343 55556554322 22222 22222267899999988887
Q ss_pred ecCCCCCe--EEEEECCCCceEEEeecCCcEeEEEeCCCCceeeee
Q 019847 208 GGGREDGC--IKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 208 ~~g~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (335)
.. .+|. |.+.|+.++...+.+..........|.+++..+...
T Consensus 344 ~~--~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 344 SS--SGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred ec--cCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEe
Confidence 64 4555 777777766655566555556667788888777654
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.2e-06 Score=68.76 Aligned_cols=163 Identities=12% Similarity=0.146 Sum_probs=105.9
Q ss_pred EEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecC-CCEEE
Q 019847 82 LQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNE-GNLLA 160 (335)
Q Consensus 82 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~ 160 (335)
++..+..+.+....+..+...|..++|+|.+..++..++.+..|++.|+++... ...+..+ ..+++++|.-| .+++.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-VSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee-eeheecc-CCceeeeeccCCcceeE
Confidence 566665566666667778889999999996666899999999999999996554 4445555 78999999874 56788
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEec------CCCCcEEEEecCCCCCeEEEEECC----CCceEEEe
Q 019847 161 SGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWS------PHQVNVLATGGGREDGCIKIWNVQ----KGTCIHGI 230 (335)
Q Consensus 161 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~~~g~~d~~i~i~d~~----~~~~~~~~ 230 (335)
.|...|.|.+||++..+.......-.-...+|..++.- +.+. +++... -.+..|++. ...++..+
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~l----t~l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFAL----TVLQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeee----hhhhhhhhhccccCCCccccc
Confidence 88899999999999765432222111123344433322 2232 333322 234455543 22334445
Q ss_pred ecCCcEeEEEeCCCCceeeee
Q 019847 231 DAKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~ 251 (335)
+.++...++++.+..+.++..
T Consensus 328 e~pG~cismqy~~~snh~l~t 348 (463)
T KOG1645|consen 328 EPPGICISMQYHGVSNHLLLT 348 (463)
T ss_pred CCCcceeeeeecCccceEEEE
Confidence 556677777777766666554
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.3e-05 Score=67.11 Aligned_cols=223 Identities=9% Similarity=0.003 Sum_probs=133.7
Q ss_pred CCCEEEEEEC-CCcEEEEeCCCceeEeeec-ccccceeEeeec--CCCCCEEEEee------------------CCCcEE
Q 019847 69 DAKTLAVGYM-DSKLQLWDAETSKLVRNLE-GHHRRVATSSWN--HWNGHILTSGS------------------KDKSII 126 (335)
Q Consensus 69 ~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~l~~~~------------------~dg~i~ 126 (335)
||++|+.-.. +..|...++...+.-+.++ .....+..+.+. | +..++++++ ..+.+.
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p-~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIP-RTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccC-CccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 6777777653 5566666666555433332 122334444443 3 333443332 223455
Q ss_pred EEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC---C-eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCC
Q 019847 127 NHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD---N-VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQV 202 (335)
Q Consensus 127 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 202 (335)
+.|.++.+...+..- .+....++++|+++++++.+.+ | ++..-+.... ..+..+.. ..+ -++.++|+
T Consensus 219 vID~etmeV~~qV~V--dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~---d~~vvfni--~~i--ea~vkdGK 289 (635)
T PRK02888 219 AVDAETMEVAWQVMV--DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER---DWVVVFNI--ARI--EEAVKAGK 289 (635)
T ss_pred EEECccceEEEEEEe--CCCcccceECCCCCEEEEeccCcccCcceeeeccccC---ceEEEEch--HHH--HHhhhCCC
Confidence 556554433333222 2234567788888888877632 1 2222221110 00111100 000 13345676
Q ss_pred cEEEEecCCCCCeEEEEECCC-----CceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce----
Q 019847 203 NVLATGGGREDGCIKIWNVQK-----GTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK---- 273 (335)
Q Consensus 203 ~~~~~~~g~~d~~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~---- 273 (335)
+.++ .++.|.+.|.++ .+.+..+..+.....+.++|+|+++++.. ..++.+.|+|+.+.+.
T Consensus 290 ~~~V-----~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVan-----klS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 290 FKTI-----GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANG-----KLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred EEEE-----CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeC-----CCCCcEEEEEChhhhhhhhc
Confidence 5554 367899999998 46778888889999999999999997763 5689999999988653
Q ss_pred --------eecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 274 --------VGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 274 --------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
+.+.+--. .....+|.++|....|---|..|..|++..
T Consensus 360 ~~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33333322 245678999998888888999999999886
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.8e-05 Score=65.32 Aligned_cols=245 Identities=15% Similarity=0.166 Sum_probs=133.0
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEeCCCcee-------------------------------------------Eeee
Q 019847 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL-------------------------------------------VRNL 96 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------------------------------------~~~~ 96 (335)
.|+.+.|+++..-|++|...|.|.||.....+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 478899999988999999999999986532110 1112
Q ss_pred cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE-eec------CCCCEEEEEeec-----CC---CEEEE
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC-IKA------HSGEVCGLKWSN-----EG---NLLAS 161 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~------~~~~i~~~~~~~-----~~---~~l~~ 161 (335)
....++|++++.+ +-.+++.|..+|.+.+.|++....+... +.. ....++++.|.. |+ -.+++
T Consensus 83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 2335788899887 6789999999999999999854433321 112 234688888863 22 37889
Q ss_pred EeCCCeEEEEEccCCCcc----cceeeccCCCCCeeEEE-ecCC-C-------------------CcEEEEecCCCCCeE
Q 019847 162 GGDDNVVRIWERSKMSSS----KSLHRFTDHCGGVKALA-WSPH-Q-------------------VNVLATGGGREDGCI 216 (335)
Q Consensus 162 ~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~v~~~~-~~~~-~-------------------~~~~~~~~g~~d~~i 216 (335)
|...|.+.+|.+.-.... ........+.++|..+. ++.+ + +.+++++ .+..+
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv---Se~~i 237 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV---SESDI 237 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE----SSEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE---cccce
Confidence 999999999987521111 11111123556665554 3221 1 1244444 38899
Q ss_pred EEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC----CceeEeEEcC
Q 019847 217 KIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN----SRILDLSQSP 291 (335)
Q Consensus 217 ~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~----~~i~~~~~~~ 291 (335)
+++...+.+..+..... .....+.+-+-.. .-.+..+++-..+|.+++|.+...+.+..++.+. ..+....+++
T Consensus 238 rv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~-~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~ 316 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSFDDPFLCSSASVVPTIS-RNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR 316 (395)
T ss_dssp EEE-TT---EEEEE-SS-EEEEEEEEEEEE--EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred EEEeCCCCcccceeeccccccceEEEEeecc-cCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence 99999888776655422 1222333321000 0011123333679999999999999887776532 2456678899
Q ss_pred CCCEEEEEeCCCcEEEEecC
Q 019847 292 DGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 292 ~~~~l~~~~~dg~v~iw~~~ 311 (335)
+|..++-.+. ..+.++.+.
T Consensus 317 ~Gdi~~~~gp-sE~~l~sv~ 335 (395)
T PF08596_consen 317 NGDIFYWTGP-SEIQLFSVW 335 (395)
T ss_dssp TS-EEEE-SS-SEEEEEEEE
T ss_pred CCCEEEEeCc-ccEEEEEEE
Confidence 9997776654 344444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00012 Score=59.27 Aligned_cols=233 Identities=14% Similarity=0.089 Sum_probs=131.1
Q ss_pred eeecCCceEEEecCCeEEEEEe-cCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee----
Q 019847 22 IDWGRNNVLAVALGPVLFLWKW-ENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL---- 96 (335)
Q Consensus 22 ~~~~~~~~~~~~~~~~i~vw~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---- 96 (335)
.+-.++.++.|+.+| +++++. ...+...... ...|..+...|+-+.|++-+ |+.++++++..-......
T Consensus 3 ~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~----~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 3 ADSWGDRLLVGTEDG-LYVYDLSDPSKPTRILK----LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cccCCCEEEEEECCC-EEEEEecCCccceeEee----cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccc
Confidence 344556777777777 999998 3333333332 33499999999877776664 699999998764433311
Q ss_pred ----------cccccceeEee-ecCCCCCEEEEeeCCCcEEEEecccCC----eeeEEeecCCCCEEEEEeecCCCEEEE
Q 019847 97 ----------EGHHRRVATSS-WNHWNGHILTSGSKDKSIINHDVRVSN----NVTSCIKAHSGEVCGLKWSNEGNLLAS 161 (335)
Q Consensus 97 ----------~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~ 161 (335)
......+...+ -....+...++......|.+|...... ...+.+ .....+.+++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEE
Confidence 11223344444 112244444444555589888887531 122222 345788999998 457887
Q ss_pred EeCCCeEEEEEccCCCcccceeeccC----------CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEE--E
Q 019847 162 GGDDNVVRIWERSKMSSSKSLHRFTD----------HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIH--G 229 (335)
Q Consensus 162 ~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~--~ 229 (335)
|..+ ...+.|+.+... ..+..... ...++..+... ++..+ .+ .|..-.+.|. .|+..+ .
T Consensus 154 ~~~~-~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~L-l~----~~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GTSK-GFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFL-LC----YDNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred EeCC-ceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEeC-CceEE-EE----ecceEEEEcC-CCCcCcccE
Confidence 7755 477888885433 22221111 11233333333 34334 33 3444445554 444332 3
Q ss_pred eecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC
Q 019847 230 IDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN 281 (335)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 281 (335)
+.-...+.++.+. ..+++. -.++.|.||++.+++.++.+....
T Consensus 225 i~W~~~p~~~~~~--~pyli~-------~~~~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 225 IQWSSAPQSVAYS--SPYLIA-------FSSNSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EEcCCchhEEEEE--CCEEEE-------ECCCEEEEEECcCCcEEEEEECCC
Confidence 3333444455542 234433 236779999999999988876543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-08 Score=85.60 Aligned_cols=202 Identities=17% Similarity=0.299 Sum_probs=127.5
Q ss_pred cceeEeeecCC-CCCEEEEeeCCCcEEEEecccCCee-eEEeecCCCCEEEEEeec-CCCEEEEEe----CCCeEEEEEc
Q 019847 101 RRVATSSWNHW-NGHILTSGSKDKSIINHDVRVSNNV-TSCIKAHSGEVCGLKWSN-EGNLLASGG----DDNVVRIWER 173 (335)
Q Consensus 101 ~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~----~dg~i~iwd~ 173 (335)
..+.|+++.-. +..+++.|..+|.|-+-..+..... .....++..+.++++|++ |.++||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 34556665542 3367889999999999888754432 455667888999999999 677888874 3567999998
Q ss_pred cCCCc-ccceeecc-CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCC-CCceeee
Q 019847 174 SKMSS-SKSLHRFT-DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNR-HHKEILS 250 (335)
Q Consensus 174 ~~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 250 (335)
.+.-. ++.-..+. +......+++|..+.+ ++.+|. ....+.++|++........-....+..+..+| .+.++++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm--~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGM--TSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcc-hhhccc--ccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec
Confidence 86511 11111111 2334466889996664 555554 78899999998432211111122455677777 5555554
Q ss_pred eeeeeeecCCCeEEEEE-CCCCc-eeecccCCCC----ceeEeEEcCCC-CEEEEEe-CCCcEEEEecCC
Q 019847 251 GHGFSASGDGNKLCLWK-YPNMT-KVGELQSSNS----RILDLSQSPDG-LTVATAG-ADETIRFWEAFG 312 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d-~~~~~-~~~~~~~~~~----~i~~~~~~~~~-~~l~~~~-~dg~v~iw~~~~ 312 (335)
..|+.|.+|| ..+-+ ++..+..... .+..++|+|.. ..+++.. ..++|+.+++..
T Consensus 214 -------~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 214 -------NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred -------cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 4499999999 44332 3333322222 48899999953 2445554 457899998764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.63 E-value=7e-05 Score=63.83 Aligned_cols=220 Identities=18% Similarity=0.154 Sum_probs=116.5
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEE-ecccCCe
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINH-DVRVSNN 135 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~-d~~~~~~ 135 (335)
....+..+.++|+|++++++ .||.-.|+.....+... .+.-....|.+ . +.+++-..++.|.++ +.....
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~-n~yAv~~~~~~I~I~kn~~~~~- 101 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSS-R-NRYAVLESSSTIKIYKNFKNEV- 101 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-T-S-SEEEEE-TTS-EEEEETTEE-T-
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEec-C-ccEEEEECCCeEEEEEcCcccc-
Confidence 44567899999999999885 58889999854443322 24456678886 4 446777778899996 443222
Q ss_pred eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe
Q 019847 136 VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215 (335)
Q Consensus 136 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 215 (335)
... +. ....+..+-. |.+|+..+. +.|.+||..+. +.+..+.- .+|..+.|++++..++..+ +..
T Consensus 102 ~k~-i~-~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~---~~i~~i~v--~~vk~V~Ws~~g~~val~t----~~~ 166 (443)
T PF04053_consen 102 VKS-IK-LPFSVEKIFG---GNLLGVKSS-DFICFYDWETG---KLIRRIDV--SAVKYVIWSDDGELVALVT----KDS 166 (443)
T ss_dssp T-------SS-EEEEE----SSSEEEEET-TEEEEE-TTT-----EEEEESS---E-EEEEE-TTSSEEEEE-----S-S
T ss_pred ceE-Ec-CCcccceEEc---CcEEEEECC-CCEEEEEhhHc---ceeeEEec--CCCcEEEEECCCCEEEEEe----CCe
Confidence 111 11 1223444433 787877764 48999998763 45665542 3489999999997665554 567
Q ss_pred EEEEECCCC-----------ceEEEe-ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCc
Q 019847 216 IKIWNVQKG-----------TCIHGI-DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSR 283 (335)
Q Consensus 216 i~i~d~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 283 (335)
+.+++.... ..+..+ +....|.+..|..+ -++.+. .+.++-+ ..|+. ..+..-..+
T Consensus 167 i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT--------~~~lkYl--~~Ge~-~~i~~ld~~ 234 (443)
T PF04053_consen 167 IYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT--------SNHLKYL--VNGET-GIIAHLDKP 234 (443)
T ss_dssp EEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE---------TTEEEEE--ETTEE-EEEEE-SS-
T ss_pred EEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc--------CCeEEEE--EcCCc-ceEEEcCCc
Confidence 888775433 023333 23678888888776 333322 2355542 22222 122222345
Q ss_pred eeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 284 ILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 284 i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
+.=+...|+.+.+.....|+.|..+.+..
T Consensus 235 ~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 235 LYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp -EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred eEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 66677778777888899999998887653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00021 Score=60.41 Aligned_cols=265 Identities=12% Similarity=0.108 Sum_probs=170.3
Q ss_pred EEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEE
Q 019847 38 LFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHIL 116 (335)
Q Consensus 38 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 116 (335)
+.+++..+.+......+.. ....+...|++..+.... ....+...+...................++.++...+..
T Consensus 13 ~~v~~~~~~~~~~~~~~~~---~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vy 89 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR---GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVY 89 (381)
T ss_pred eEEEeecccEEEEEeecCC---CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEE
Confidence 6666666655544444322 467788889886555443 222455555542222221221113445677777344466
Q ss_pred EEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC---CCeEEEEEccCCCcccceeeccCCCCCee
Q 019847 117 TSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD---DNVVRIWERSKMSSSKSLHRFTDHCGGVK 193 (335)
Q Consensus 117 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 193 (335)
+....++.|.+.|..+.........+. ....++++|+++.+.++.. ++.+.+.|..+. +..........+ .
T Consensus 90 v~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~---~~~~~~~vG~~P-~ 163 (381)
T COG3391 90 VTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN---KVTATIPVGNTP-T 163 (381)
T ss_pred EecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC---eEEEEEecCCCc-c
Confidence 666677999999977665544443333 5678999999887777665 678888885553 333333322234 8
Q ss_pred EEEecCCCCcEEEEecCCCCCeEEEEECCCCceEE-----EeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEEC
Q 019847 194 ALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIH-----GIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268 (335)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 268 (335)
.++++|++..++++.. .++.|.+.|........ ..........+.++|+|.++..... .+.++.+...|.
T Consensus 164 ~~a~~p~g~~vyv~~~--~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~---~~~~~~v~~id~ 238 (381)
T COG3391 164 GVAVDPDGNKVYVTNS--DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND---GSGSNNVLKIDT 238 (381)
T ss_pred eEEECCCCCeEEEEec--CCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEec---cCCCceEEEEeC
Confidence 8999999998888765 79999999977666553 1333455678899999997766531 122468999999
Q ss_pred CCCceeecccCCCC-ceeEeEEcCCCCEEEEEeC-CCcEEEEecCCCCCC
Q 019847 269 PNMTKVGELQSSNS-RILDLSQSPDGLTVATAGA-DETIRFWEAFGPSGD 316 (335)
Q Consensus 269 ~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~ 316 (335)
.++.....-..-.. ....+..+|+|..+.+... .+.+.+-|.......
T Consensus 239 ~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~ 288 (381)
T COG3391 239 ATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVV 288 (381)
T ss_pred CCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence 88877665221111 4567899999998888844 477888887765433
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.6e-05 Score=59.72 Aligned_cols=227 Identities=15% Similarity=0.069 Sum_probs=129.7
Q ss_pred CCCCEEEEEECCCcEEEEeCCC-ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE-------
Q 019847 68 HDAKTLAVGYMDSKLQLWDAET-SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC------- 139 (335)
Q Consensus 68 ~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~------- 139 (335)
..++.|+.|+.+| +.+++... .+..+.. +...|..+...+ +-+.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 3678999999888 99999833 3333322 223499999998 666665554 499999998754332210
Q ss_pred ------eecCCCCEEEEE--eecCCCEEEEEeCCCeEEEEEccCCCc-c-cceeeccCCCCCeeEEEecCCCCcEEEEec
Q 019847 140 ------IKAHSGEVCGLK--WSNEGNLLASGGDDNVVRIWERSKMSS-S-KSLHRFTDHCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 140 ------~~~~~~~i~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~-~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
.......+...+ -.+.+...+......+|.+|....... . ...+.+. -...+..++|.++ .++.+
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~---~i~v~- 154 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN---KICVG- 154 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCC---EEEEE-
Confidence 111223444444 112333334444466999998876422 2 3444443 4577889999843 34444
Q ss_pred CCCCCeEEEEECCCCceEEEeecC-------------CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceee-
Q 019847 210 GREDGCIKIWNVQKGTCIHGIDAK-------------AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVG- 275 (335)
Q Consensus 210 g~~d~~i~i~d~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~- 275 (335)
......+.|+.++.....+... .++..+. -+++.++++. +..-.+.|. .|++..
T Consensus 155 --~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~--------~~~g~fv~~-~G~~~r~ 222 (275)
T PF00780_consen 155 --TSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY--------DNIGVFVNK-NGEPSRK 222 (275)
T ss_pred --eCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe--------cceEEEEcC-CCCcCcc
Confidence 2567899999977665443221 1222233 3344555543 333333343 444332
Q ss_pred -cccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcc
Q 019847 276 -ELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSV 320 (335)
Q Consensus 276 -~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 320 (335)
.++- ...+.++++.. .+|+..+.+ .|.||++.+++..+...
T Consensus 223 ~~i~W-~~~p~~~~~~~--pyli~~~~~-~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 223 STIQW-SSAPQSVAYSS--PYLIAFSSN-SIEVRSLETGELVQTIP 264 (275)
T ss_pred cEEEc-CCchhEEEEEC--CEEEEECCC-EEEEEECcCCcEEEEEE
Confidence 2222 22455666643 478877664 59999999987655443
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.8e-08 Score=85.64 Aligned_cols=198 Identities=15% Similarity=0.167 Sum_probs=143.8
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC--eE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN--VV 168 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i 168 (335)
+..+.+..|....+|++|+- +.+.|+.|+..|.|++|+..++.. ......|..+|+.+.-+.+|..+++.+.-. -.
T Consensus 1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCchH
Confidence 34456777888999999999 899999999999999999987765 455678999999999888998887766443 46
Q ss_pred EEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-----CCcEeEEEeCC
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-----KAQICGLEWNR 243 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~ 243 (335)
.+|++.. .....+.+.. -.++.|+.....-+ .|. ......+||++++.++.++-. ...-+...|+|
T Consensus 1170 aLW~~~s--~~~~~Hsf~e----d~~vkFsn~~q~r~-~gt--~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1170 ALWDASS--TGGPRHSFDE----DKAVKFSNSLQFRA-LGT--EADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred HHhcccc--ccCccccccc----cceeehhhhHHHHH-hcc--cccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence 7899765 2344444432 35678877643222 222 556789999999987766322 23457789999
Q ss_pred CCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 019847 244 HHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
....++- || .+||++..+.++.|...... ..-.|+|.|.-++.-++ |||+.+.+..
T Consensus 1241 ~D~LIln---------dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lL 1296 (1516)
T KOG1832|consen 1241 CDTLILN---------DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLL 1296 (1516)
T ss_pred CcceEee---------Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHH
Confidence 9988763 44 47999998888777655422 23469999988887664 8988875543
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00012 Score=60.51 Aligned_cols=220 Identities=12% Similarity=0.076 Sum_probs=125.3
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEE---cCC----CCEEEEEEC---------C-CcEEEEeCCCc----eeEe
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSW---SHD----AKTLAVGYM---------D-SKLQLWDAETS----KLVR 94 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~---~~~----~~~l~~~~~---------d-g~i~iw~~~~~----~~~~ 94 (335)
..|++.|..+.+....+.++.+ ..+.+++. ..+ ..++++|+. . |.|.++++... ..+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 4688899888887777777653 34555443 322 468888753 2 89999999884 1222
Q ss_pred ee--cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC-eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEE
Q 019847 95 NL--EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN-NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 95 ~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
.+ ....++|++++-. ++. |+++. .+.|.+|++...+ ............+.++... +++++.|+....+.++
T Consensus 81 ~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLL 154 (321)
T ss_dssp EEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred EEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEE
Confidence 22 2356889988875 444 44333 5889999998777 3333333334466776655 5599999988888888
Q ss_pred EccCCCc-ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC-------Cc----eEEEeecCCcEeEE
Q 019847 172 ERSKMSS-SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK-------GT----CIHGIDAKAQICGL 239 (335)
Q Consensus 172 d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-------~~----~~~~~~~~~~~~~~ 239 (335)
..+.... ...+.. ......++++.+-+++..++++. .+|.+.++.... +. ....+..+..++++
T Consensus 155 ~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D---~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~ 230 (321)
T PF03178_consen 155 RYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGD---KDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSF 230 (321)
T ss_dssp EEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEE---TTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEE
T ss_pred EEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEc---CCCeEEEEEECCCCcccccccccceeEEEEECCCccceE
Confidence 6554211 122221 22345588888987765444433 799999998752 22 23444556777777
Q ss_pred ---EeCCC--CceeeeeeeeeeecCCCeEEEE
Q 019847 240 ---EWNRH--HKEILSGHGFSASGDGNKLCLW 266 (335)
Q Consensus 240 ---~~~~~--~~~~~~~~~~~~~~~~~~i~i~ 266 (335)
.+.|. +........+..++.+|.|...
T Consensus 231 ~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 231 RRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 55552 2221001112223567887743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00017 Score=58.08 Aligned_cols=268 Identities=12% Similarity=0.126 Sum_probs=150.6
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE----------CCCcEEEEeCCCceeEeeeccccc-c--
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY----------MDSKLQLWDAETSKLVRNLEGHHR-R-- 102 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~-~-- 102 (335)
+.++++|.++++.+-.+.. +..-.+..+|+++.+.++. ..-.|.+||..+-....++.-... .
T Consensus 17 ~rv~viD~d~~k~lGmi~~----g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT----GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE----ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCCcEEEEeec----ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 4899999999987666553 2345577899999988753 234799999999888776543222 1
Q ss_pred ----eeEeeecCCCCCEEEEee--CCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCC
Q 019847 103 ----VATSSWNHWNGHILTSGS--KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 103 ----v~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 176 (335)
.....++. ++++++... -..+|.+.|+...+- ...+. -.+ ...+--+++ +-|.+-+.||.+.-..+...
T Consensus 93 ~~~~~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kv-v~ei~-~PG-C~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 93 VVPYKNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKV-VGEID-TPG-CWLIYPSGN-RGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp BS--GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEE-EEEEE-GTS-EEEEEEEET-TEEEEEETTSCEEEEEETST
T ss_pred ecccccceEEcc-CCcEEEEEccCCCCeEEEEECCCCce-eeeec-CCC-EEEEEecCC-CceEEEecCCceEEEEECCC
Confidence 12234444 555554432 234566666653332 32222 111 111211222 45777788999998888743
Q ss_pred Ccccce--eeccCCCCCe-eEEEecCCCCcEEEEecCCCCCeEEEEECCCCceE--EEeec-----------CCcEeEEE
Q 019847 177 SSSKSL--HRFTDHCGGV-KALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI--HGIDA-----------KAQICGLE 240 (335)
Q Consensus 177 ~~~~~~--~~~~~~~~~v-~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~-----------~~~~~~~~ 240 (335)
...... ..+.....++ ..-.+...+..++... .+|.|+--|+...... ..++. ++...-++
T Consensus 168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S---y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A 244 (342)
T PF06433_consen 168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS---YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIA 244 (342)
T ss_dssp SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEB---TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EE
T ss_pred CCEeEeeccccCCCCcccccccceECCCCeEEEEe---cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeee
Confidence 322211 1222223332 2334444444444433 6899999998765432 22221 11233356
Q ss_pred eCCCCceeeeeeeeeeec----CC--CeEEEEECCCCceeecccCCCCceeEeEEcCCCC-EEEEE-eCCCcEEEEecCC
Q 019847 241 WNRHHKEILSGHGFSASG----DG--NKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGL-TVATA-GADETIRFWEAFG 312 (335)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~----~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~~dg~v~iw~~~~ 312 (335)
+++....+.+-.. -+. .+ ..|-++|+.+++.+.++... .++.+|+.+.+.+ +|++. ..++.+.+||..+
T Consensus 245 ~~~~~~rlyvLMh--~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 245 YHAASGRLYVLMH--QGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EETTTTEEEEEEE--E--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred eccccCeEEEEec--CCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 6665555443211 111 11 34778899999999988742 3578999998865 66554 4689999999999
Q ss_pred CCCCCC
Q 019847 313 PSGDED 318 (335)
Q Consensus 313 ~~~~~~ 318 (335)
++....
T Consensus 322 Gk~~~~ 327 (342)
T PF06433_consen 322 GKLVRS 327 (342)
T ss_dssp --EEEE
T ss_pred CcEEee
Confidence 866543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00044 Score=58.96 Aligned_cols=119 Identities=11% Similarity=0.113 Sum_probs=83.7
Q ss_pred eeEEEecCCCCcEEEEec--CCCCCe----EEEEECCCCce----EEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCC
Q 019847 192 VKALAWSPHQVNVLATGG--GREDGC----IKIWNVQKGTC----IHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGN 261 (335)
Q Consensus 192 v~~~~~~~~~~~~~~~~~--g~~d~~----i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (335)
..++.|+-..++.+.+-. -+.+|. -.+|+...++. +..++.+..+.+++++|+...++.| +.||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlG------C~Dg 281 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLG------CEDG 281 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEE------ecCC
Confidence 456777765555444421 002332 34566654432 3455668899999999999999998 6799
Q ss_pred eEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 262 KLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 262 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
.|.+||...+... .....-..+.++|+|+|.++++|+..|.+.+||+.-......
T Consensus 282 SiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~q 336 (545)
T PF11768_consen 282 SIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQ 336 (545)
T ss_pred eEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcccee
Confidence 9999998766433 223334578899999999999999999999999986654443
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00044 Score=58.48 Aligned_cols=225 Identities=14% Similarity=0.170 Sum_probs=150.5
Q ss_pred CCceEEEEcCCCCEEEEE-ECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeC---CCcEEEEecccCC
Q 019847 59 DYPTSVSWSHDAKTLAVG-YMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK---DKSIINHDVRVSN 134 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~ 134 (335)
.....++.++.++.+... ..++.|.+.|..+.+........ .....+++++ +++.+..+.. ++.+.+.|..+..
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCe
Confidence 345678888988855444 45689999998877776665533 3777899999 6655555544 6889999988766
Q ss_pred eeeEEeecCCCCEEEEEeecCCCEEEEEe-CCCeEEEEEccCCCccc-ceeeccCCCCCeeEEEecCCCCcEEEEecCCC
Q 019847 135 NVTSCIKAHSGEVCGLKWSNEGNLLASGG-DDNVVRIWERSKMSSSK-SLHRFTDHCGGVKALAWSPHQVNVLATGGGRE 212 (335)
Q Consensus 135 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 212 (335)
.... ...-..+ ..+++.|+++.+.... .++.|.+.|.+...... .......-......+.++|++.++.+...++.
T Consensus 152 ~~~~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 152 VTAT-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred EEEE-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence 5555 3333334 8899999999666655 78899999966532211 00001112233467899999998877765333
Q ss_pred CCeEEEEECCCCceEEE-eecCC-cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCC---ceeEe
Q 019847 213 DGCIKIWNVQKGTCIHG-IDAKA-QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNS---RILDL 287 (335)
Q Consensus 213 d~~i~i~d~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~---~i~~~ 287 (335)
++.+...|..++..... ..... ....+..+|+|+.+.+.. ...+.+.+.|..+............ .+..+
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~-----~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~ 304 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVAN-----SQGGTVSVIDGATDRVVKTGPTGNEALGEPVSI 304 (381)
T ss_pred CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEe-----cCCCeEEEEeCCCCceeeeecccccccccceec
Confidence 47999999998877665 33222 567789999999987763 3368999999888777766543322 34445
Q ss_pred EEcCC
Q 019847 288 SQSPD 292 (335)
Q Consensus 288 ~~~~~ 292 (335)
++.+.
T Consensus 305 ~~~~~ 309 (381)
T COG3391 305 AISPL 309 (381)
T ss_pred cceee
Confidence 54443
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00025 Score=55.40 Aligned_cols=203 Identities=15% Similarity=0.199 Sum_probs=112.1
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
.+.+-...+..+.|.|.++.++++....+.|..++.+ ++.+.+......+..-.+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4555566799999999567788888888888888864 444333322334668889998888777766568999999984
Q ss_pred CCCccc---ceee-----ccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC---CceEEEee---------cCC
Q 019847 175 KMSSSK---SLHR-----FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK---GTCIHGID---------AKA 234 (335)
Q Consensus 175 ~~~~~~---~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---~~~~~~~~---------~~~ 234 (335)
...... .... ...++..+-.++|+|.+..++++- +..-..+|.+.. ...+.... .-.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceeeccccccccccceec
Confidence 322111 1111 113456689999999988888875 455555555543 22222111 123
Q ss_pred cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC---------CceeEeEEcCCCCEEEEEeCCCcE
Q 019847 235 QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN---------SRILDLSQSPDGLTVATAGADETI 305 (335)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~v 305 (335)
.+.++.++|....++.- +..+..+..+| .+++++..+.-.. ...-.|+|.++|++.++ ++-+..
T Consensus 172 d~S~l~~~p~t~~lliL-----S~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlf 244 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLIL-----SDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLF 244 (248)
T ss_dssp ---EEEEETTTTEEEEE-----ETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEE
T ss_pred cccceEEcCCCCeEEEE-----ECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceE
Confidence 57889999987655432 37788898999 6666655433111 23678999999975554 455544
Q ss_pred EEE
Q 019847 306 RFW 308 (335)
Q Consensus 306 ~iw 308 (335)
++|
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0002 Score=61.10 Aligned_cols=223 Identities=14% Similarity=0.149 Sum_probs=113.7
Q ss_pred ccccceeeeecC-CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeE
Q 019847 15 EDYYSKVIDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV 93 (335)
Q Consensus 15 ~~~~~~~~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 93 (335)
.+.++..++++| +++++++.+|...|+.....+... . +.-....|.+.+ .+|+-..+++|.|+.--+.+..
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~--~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA--F-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE--E-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT
T ss_pred CCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc--c-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccccc
Confidence 356678899998 478888999999999844433222 1 223568899855 4666666888999743333332
Q ss_pred eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 94 RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
+.++.. ..+..+- .|.+|...+.+ .|.+||+.+.+.+.+ .. -.+|..+.|++++.+++..+.+ .+.+++.
T Consensus 103 k~i~~~-~~~~~If----~G~LL~~~~~~-~i~~yDw~~~~~i~~-i~--v~~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 103 KSIKLP-FSVEKIF----GGNLLGVKSSD-FICFYDWETGKLIRR-ID--VSAVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp -----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEE-ES--S-E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred eEEcCC-cccceEE----cCcEEEEECCC-CEEEEEhhHcceeeE-Ee--cCCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 334321 2233332 26777776654 899999997765433 33 2248999999999999999855 6777764
Q ss_pred cCC------C--cccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCC
Q 019847 174 SKM------S--SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHH 245 (335)
Q Consensus 174 ~~~------~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (335)
+.. + ....+.....-...|.+.+|..+ -++.+. .+.++. +..|+.-..-....++.-+.+.|..
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT----~~~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~ 244 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT----SNHLKY--LVNGETGIIAHLDKPLYLLGYLPKE 244 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-----TTEEEE--EETTEEEEEEE-SS--EEEEEETTT
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc----CCeEEE--EEcCCcceEEEcCCceEEEEEEccC
Confidence 421 0 00123333222567899999876 344443 236666 4445543333334556666666655
Q ss_pred ceeeeeeeeeeecCCCeEEEEECC
Q 019847 246 KEILSGHGFSASGDGNKLCLWKYP 269 (335)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~i~d~~ 269 (335)
..+... ..++.+..+.+.
T Consensus 245 ~~ly~~------Dr~~~v~~~~ld 262 (443)
T PF04053_consen 245 NRLYLI------DRDGNVISYELD 262 (443)
T ss_dssp TEEEEE-------TT--EEEEE--
T ss_pred CEEEEE------ECCCCEEEEEEC
Confidence 555443 446666666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.2e-05 Score=69.64 Aligned_cols=144 Identities=16% Similarity=0.207 Sum_probs=101.6
Q ss_pred CCEEEEE-ECCCcEEEEeCCCceeEeeecccccc-eeEeeec----CCCCCEEEEeeCCCcEEEEecccCCe-eeEE-e-
Q 019847 70 AKTLAVG-YMDSKLQLWDAETSKLVRNLEGHHRR-VATSSWN----HWNGHILTSGSKDKSIINHDVRVSNN-VTSC-I- 140 (335)
Q Consensus 70 ~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~-v~~~~~~----~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~-~- 140 (335)
.++|+.- .....|+-.|+++|+.+.++..+... |..++-. ...+..-+.|-.++.+..||.+.... +... .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 34578999999999999999987654 5554332 11345567788899999999986542 2211 1
Q ss_pred -ecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEE
Q 019847 141 -KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219 (335)
Q Consensus 141 -~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~ 219 (335)
.......+|++-+.+| +||+|+.+|.||+||-- + ......+.+-..+|..+..+.||++++++| +..+.++
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g--~~AKT~lp~lG~pI~~iDvt~DGkwilaTc----~tyLlLi 644 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-G--KRAKTALPGLGDPIIGIDVTADGKWILATC----KTYLLLI 644 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-c--hhhhhcCCCCCCCeeEEEecCCCcEEEEee----cceEEEE
Confidence 1233456777776665 79999999999999932 2 223334456678999999999999999997 6888888
Q ss_pred EC
Q 019847 220 NV 221 (335)
Q Consensus 220 d~ 221 (335)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 85
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.9e-06 Score=74.54 Aligned_cols=114 Identities=18% Similarity=0.386 Sum_probs=92.3
Q ss_pred CCCceEEEEcCCCCEEEEEE----CCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccC
Q 019847 58 DDYPTSVSWSHDAKTLAVGY----MDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVS 133 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 133 (335)
....+-..|+|...++|+++ ..|+|.|| .++|++-+... .+-.+++++|+| ..-.|+.|-.-|.+.+|...+.
T Consensus 15 davsti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt-~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT-YPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc-cceehhhhccCh-HHHHHhhccccceeEEEecCCc
Confidence 33345568999999999886 46889998 46777655443 334567899999 8889999999999999998754
Q ss_pred CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC
Q 019847 134 NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 134 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 175 (335)
+ .......|..+|..+.|||+|..++++..-|.+.+|....
T Consensus 92 e-~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 92 E-THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred e-eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 4 4666678999999999999999999999999999998763
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00067 Score=57.86 Aligned_cols=197 Identities=14% Similarity=0.107 Sum_probs=102.8
Q ss_pred cEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE------EeecCCCCEEEEEeec
Q 019847 81 KLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS------CIKAHSGEVCGLKWSN 154 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~------~~~~~~~~i~~~~~~~ 154 (335)
.|+||+. .|+++..+.-..+.+.++.|.. ...|++-..||.+++||+. +..... ...-....+....+..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCC
Confidence 4889985 4666776654558999999985 4556677799999999986 322000 0011111222223333
Q ss_pred CCCEEEEEeCCCeEEEEEccCCC-cccceeeccC-------CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce
Q 019847 155 EGNLLASGGDDNVVRIWERSKMS-SSKSLHRFTD-------HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC 226 (335)
Q Consensus 155 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 226 (335)
+|-.++ ..++.+.+..-.... ..+.+..... +........++.+....+... .++.+.+.+-...+
T Consensus 138 ~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~---~g~~i~~i~~~~~~- 211 (410)
T PF04841_consen 138 NGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLA---NGETIYIIDENSFK- 211 (410)
T ss_pred CCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEe---cCCEEEEEEccccc-
Confidence 442233 345555444311110 0011111110 000000022333333333322 34555544432221
Q ss_pred EEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC-CCceeEeEEcCCCCE
Q 019847 227 IHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS-NSRILDLSQSPDGLT 295 (335)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~ 295 (335)
.+...+++..++.||++++++.- ..+|.+.+....-.+.+.++... ......+.|.-++..
T Consensus 212 --~i~~~~~i~~iavSpng~~iAl~------t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 212 --QIDSDGPIIKIAVSPNGKFIALF------TDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred --cccCCCCeEEEEECCCCCEEEEE------ECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 13345789999999999999865 45788888876655555555433 335567777665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.2e-06 Score=71.97 Aligned_cols=148 Identities=16% Similarity=0.150 Sum_probs=102.9
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee-cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL-EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN 135 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 135 (335)
+...|.--+++..+++++.|+.-|.+++|+-..++....- .+..+.+..+..++ +..+++.|+..|.|.++-+....+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence 3445555667778999999999999999997766543322 22445566666777 889999999999999998876443
Q ss_pred eeEE-----eecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC-CCcccceeeccCCCCCeeEEEecCCCCcEEEE
Q 019847 136 VTSC-----IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK-MSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207 (335)
Q Consensus 136 ~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 207 (335)
.... -..|...|++++|++++..+.+|...|+|..-.+.. ..-....+.+....+.|-.+..... +++++
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~--~LLVS 186 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQS--YLLVS 186 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccc--eehHh
Confidence 2221 123678899999999999999999999999887765 1111122333334566767666542 34443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4e-05 Score=65.04 Aligned_cols=163 Identities=17% Similarity=0.305 Sum_probs=102.7
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCC--cEEEEeCCCceeEeeecccccceeEeeecCCC
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDS--KLQLWDAETSKLVRNLEGHHRRVATSSWNHWN 112 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 112 (335)
..+.++++++++......+.++.. ..+|+|||++|+... .|| .|.+.|+.+++..+ +....+.-+.-.|+| +
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp-d 292 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP-D 292 (425)
T ss_pred ceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC-C
Confidence 469999999998877777766654 468999999887765 455 46666777666433 554444445778999 6
Q ss_pred CCEEE-EeeCCCc--EEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC-Ce--EEEEEccCCCcccceeecc
Q 019847 113 GHILT-SGSKDKS--IINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD-NV--VRIWERSKMSSSKSLHRFT 186 (335)
Q Consensus 113 ~~~l~-~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~--i~iwd~~~~~~~~~~~~~~ 186 (335)
++.++ +.+..|. |.+++.+.... ..+....+.-..-.|+|||++++..+.. |. |.+.|+.+... .+.+
T Consensus 293 G~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~---~~~l- 366 (425)
T COG0823 293 GSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK---IRIL- 366 (425)
T ss_pred CCEEEEEeCCCCCcceEEECCCCCce--eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc---EEEc-
Confidence 66555 4455564 55555554332 3333333333377899999999887753 44 55556554332 2222
Q ss_pred CCCCCeeEEEecCCCCcEEEEec
Q 019847 187 DHCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 187 ~~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
........-.|.|++..++...+
T Consensus 367 t~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 367 TSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred cccccCCCCCcCCCCceEEEecc
Confidence 23333445678888887777653
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.001 Score=57.25 Aligned_cols=248 Identities=12% Similarity=0.129 Sum_probs=128.5
Q ss_pred eEEEEcCCCCEEEEE-ECCC----cEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCC-----------CcE
Q 019847 62 TSVSWSHDAKTLAVG-YMDS----KLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD-----------KSI 125 (335)
Q Consensus 62 ~~~~~~~~~~~l~~~-~~dg----~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----------g~i 125 (335)
....++|+|+++|.+ +..| .++++|+++++.+...-.. .....+.|.+ +++.|+....+ ..|
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeC-CCCEEEEEEeCcccccccCCCCcEE
Confidence 357899999999876 3334 5999999999876543211 1222399999 66655544322 237
Q ss_pred EEEecccCCee-eEEeecCCCC--EEEEEeecCCCEEEEEeCC----CeEEEEEccCCC-cccceeeccCCCCCe-eEEE
Q 019847 126 INHDVRVSNNV-TSCIKAHSGE--VCGLKWSNEGNLLASGGDD----NVVRIWERSKMS-SSKSLHRFTDHCGGV-KALA 196 (335)
Q Consensus 126 ~~~d~~~~~~~-~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~-~~~~~~~~~~~~~~v-~~~~ 196 (335)
+.|.+.+.... ...+...... ...+..++++++++..... ..+.+.|+.... .......+......+ ..+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 77777655432 2333333322 6788899999988765433 347777876530 112222222233333 3333
Q ss_pred ecCCCCcEEEEecCCCCCeEEEEECCCCce---E-EEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc
Q 019847 197 WSPHQVNVLATGGGREDGCIKIWNVQKGTC---I-HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 197 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 272 (335)
.. .+..++.+..+..++.|...++.+... . ..++......-..+...+.+++.... -.....|+++++..+.
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~---~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR---ENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEE---ETTEEEEEEEETT-TE
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEE---ECCccEEEEEECCCCc
Confidence 33 444455554334567888888887652 2 22333332232333334445544321 1334578899988333
Q ss_pred eeeccc-CCCCceeEeEEcCCCCEEE-EEe---CCCcEEEEecCCCCC
Q 019847 273 KVGELQ-SSNSRILDLSQSPDGLTVA-TAG---ADETIRFWEAFGPSG 315 (335)
Q Consensus 273 ~~~~~~-~~~~~i~~~~~~~~~~~l~-~~~---~dg~v~iw~~~~~~~ 315 (335)
....+. ...+.|..+...+++..+. +.+ .-+.+.-||+.+++.
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 333332 2334456666555554332 222 125667777776543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00045 Score=53.93 Aligned_cols=191 Identities=17% Similarity=0.194 Sum_probs=121.5
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeeccc-ccceeEeeecCCCCC
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH-HRRVATSSWNHWNGH 114 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~ 114 (335)
....+|..+-..........+-...+.++.|+|+.+.|++......-.|+=..+|+.++.+.-. -...-.+.|.. ++.
T Consensus 63 r~~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~ 141 (316)
T COG3204 63 RYIARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQ 141 (316)
T ss_pred chhhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCE
Confidence 3355555443332222223455566999999999999998887777777766778888876521 22344567776 677
Q ss_pred EEEEeeCCCcEEEEecccCCeeeEE------e---ecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeec
Q 019847 115 ILTSGSKDKSIINHDVRVSNNVTSC------I---KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF 185 (335)
Q Consensus 115 ~l~~~~~dg~i~~~d~~~~~~~~~~------~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 185 (335)
+.++--.++.+.++.+......... + .......-.++|.|..+.|..+=+-.-+.||........-.....
T Consensus 142 fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~ 221 (316)
T COG3204 142 FVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHAS 221 (316)
T ss_pred EEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccc
Confidence 7777778888888887654322111 1 112456778999998888888877777777776643322222211
Q ss_pred cCC-------CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEe
Q 019847 186 TDH-------CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI 230 (335)
Q Consensus 186 ~~~-------~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~ 230 (335)
..+ -..+.++.|++....+++.+. +++.+.-.|.. |..+..+
T Consensus 222 ~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~--ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 222 LDPTADRDLFVLDVSGLEFNAITNSLLVLSD--ESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred cCcccccceEeeccccceecCCCCcEEEEec--CCceEEEEecC-CCeeeeE
Confidence 112 123678889887777888775 77888777754 4444333
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0013 Score=56.18 Aligned_cols=193 Identities=12% Similarity=0.130 Sum_probs=105.3
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee-------EeeecccccceeEeeec
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL-------VRNLEGHHRRVATSSWN 109 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------~~~~~~~~~~v~~~~~~ 109 (335)
.|.+|+.. |+....+.+.. +.|.++.|+.+.+ |++-..||.+++||+. |+. +.........+....+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~--~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDS--GRIVGMGWTDDEE-LVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCC-CCEeEEEEECC--CCEEEEEECCCCe-EEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccC
Confidence 58888864 44555566654 7899999988654 5566689999999986 333 11111111222222232
Q ss_pred CCCCCEEEEeeCCCcEEEEecccCCeeeEEeec--------CCC-CEEE-EEeecCCCEEEEEeCCCeEEEEEccCCCcc
Q 019847 110 HWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA--------HSG-EVCG-LKWSNEGNLLASGGDDNVVRIWERSKMSSS 179 (335)
Q Consensus 110 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--------~~~-~i~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 179 (335)
. +| ++.-..++.+.+.+-.......+.+.. +.. .... ..++.+....+....++.+.+.+-...
T Consensus 137 ~-~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~--- 210 (410)
T PF04841_consen 137 K-NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF--- 210 (410)
T ss_pred C-CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc---
Confidence 2 33 333334444444432211111111100 000 0111 224445555555555666665542221
Q ss_pred cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC--CcEeEEEeCCCCce
Q 019847 180 KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK--AQICGLEWNRHHKE 247 (335)
Q Consensus 180 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 247 (335)
.. . ...+++..++.||+++.+.... .+|.+.+.+..-.+.+..+... .....+.|..+...
T Consensus 211 ~~---i-~~~~~i~~iavSpng~~iAl~t---~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 211 KQ---I-DSDGPIIKIAVSPNGKFIALFT---DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred cc---c-cCCCCeEEEEECCCCCEEEEEE---CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 11 1 1346899999999997655544 6899999987766777666654 56778888766443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00083 Score=56.38 Aligned_cols=232 Identities=16% Similarity=0.207 Sum_probs=128.3
Q ss_pred cccceeeeecC-CceEEEecCCeEEEEEecCCceeeEEeecCC----------------CCCceEEEEcCCCCEEEEEEC
Q 019847 16 DYYSKVIDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQVPGE----------------DDYPTSVSWSHDAKTLAVGYM 78 (335)
Q Consensus 16 ~~~~~~~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~l~~~~~ 78 (335)
........|+| +..++...++.|++++..+++..++ +..+. -+.-..+.||||+++||....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~l-T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQL-TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEES-ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEecCceEEEECCCCCeEEe-ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 34566688998 4678888899999999887754333 22220 122367889999999988643
Q ss_pred C-Cc-----------------------------------EEEEeCCCceeEe-e-e---cccccceeEeeecCCCCCEEE
Q 019847 79 D-SK-----------------------------------LQLWDAETSKLVR-N-L---EGHHRRVATSSWNHWNGHILT 117 (335)
Q Consensus 79 d-g~-----------------------------------i~iw~~~~~~~~~-~-~---~~~~~~v~~~~~~~~~~~~l~ 117 (335)
| .. +.|+|+.+++... . . .....-+..+.|.+ ++..|+
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~ 199 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRLW 199 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEEE
Confidence 2 22 3334444443211 0 1 12334677888888 666333
Q ss_pred Ee--eCCC---cEEEEecccCCeeeEEeecCCCCE---EEEEee-cCC-CEEEEEeCCCeEEEEEccCCCcccceeeccC
Q 019847 118 SG--SKDK---SIINHDVRVSNNVTSCIKAHSGEV---CGLKWS-NEG-NLLASGGDDNVVRIWERSKMSSSKSLHRFTD 187 (335)
Q Consensus 118 ~~--~~dg---~i~~~d~~~~~~~~~~~~~~~~~i---~~~~~~-~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 187 (335)
.. .++. .+.++|..++.............| ....+. +++ .++.....||.-.+|-++... .....+..
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~--~~~~~lT~ 277 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDG--GKPRQLTS 277 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTS--SEEEESS-
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccc--cceecccc
Confidence 32 2222 456667765443222222222222 245554 544 455555677765555444321 12334444
Q ss_pred CCCCee-EEEecCCCCcEEEEecCC--CCCeEEEEECCCCceEEEeecCCcE-eEEEeCCCCceeeee
Q 019847 188 HCGGVK-ALAWSPHQVNVLATGGGR--EDGCIKIWNVQKGTCIHGIDAKAQI-CGLEWNRHHKEILSG 251 (335)
Q Consensus 188 ~~~~v~-~~~~~~~~~~~~~~~~g~--~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 251 (335)
..-.|. -+.++++++.++.++.+. ....++..++..+.....+...... ..+.|+|++++++..
T Consensus 278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 455564 477899988888777521 2346667777734445566554444 499999999998764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0024 Score=56.38 Aligned_cols=285 Identities=13% Similarity=0.069 Sum_probs=157.2
Q ss_pred CCceEEEecCCeEEEEEecCCceeeEEeecCCCC--Cc-------eEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 26 RNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDD--YP-------TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 26 ~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~--~v-------~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
++.+++++.++.|+-.|.++|+.+-.+....... .. ..+++ .+..++.++.|+.+.-.|.++|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4667777788899999999998765544322111 10 01122 2356778888999999999999998776
Q ss_pred ccccc----ceeE-eeecCCCCCEEEEee------CCCcEEEEecccCCeeeEEeecCC---------------------
Q 019847 97 EGHHR----RVAT-SSWNHWNGHILTSGS------KDKSIINHDVRVSNNVTSCIKAHS--------------------- 144 (335)
Q Consensus 97 ~~~~~----~v~~-~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~~--------------------- 144 (335)
..... .+++ -... ++ .++.+. .+|.|..+|.++++.+-+......
T Consensus 147 ~~~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred ccccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 53211 1111 1111 33 444443 268899999988776433211110
Q ss_pred ---------CCE-EEEEeecCCCEEEEEeCC-----C-----------eEEEEEccCCCcccceeeccCCC-------CC
Q 019847 145 ---------GEV-CGLKWSNEGNLLASGGDD-----N-----------VVRIWERSKMSSSKSLHRFTDHC-------GG 191 (335)
Q Consensus 145 ---------~~i-~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~~-------~~ 191 (335)
..+ ..+++.|+..++..+... + .|.-.|+++++..-..+. ..|. .+
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~-~~~D~wD~d~~~~ 302 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT-TPHDEWDYDGVNE 302 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC-CCCCCccccCCCC
Confidence 111 134566656666665522 2 455556555433222221 1111 11
Q ss_pred eeEEEecCCCC--cEEEEecCCCCCeEEEEECCCCceEEEeec------------C--CcE-------------------
Q 019847 192 VKALAWSPHQV--NVLATGGGREDGCIKIWNVQKGTCIHGIDA------------K--AQI------------------- 236 (335)
Q Consensus 192 v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~------------~--~~~------------------- 236 (335)
..-+....+++ .+++.+. .+|.+++.|-++|+.+...+. . .++
T Consensus 303 p~l~d~~~~G~~~~~v~~~~--K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~ 380 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHAD--RNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVC 380 (527)
T ss_pred cEEEEeccCCcEEEEEEEeC--CCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEEC
Confidence 12233334554 4666655 999999999999988622100 0 000
Q ss_pred ---------eEEEeCCCCceeeeeeeeee---------------------------ecCCCeEEEEECCCCceeecccCC
Q 019847 237 ---------CGLEWNRHHKEILSGHGFSA---------------------------SGDGNKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 237 ---------~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~i~i~d~~~~~~~~~~~~~ 280 (335)
..++++|+...++....-.. ...-+.+.-+|+.+++..-+.+..
T Consensus 381 Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~ 460 (527)
T TIGR03075 381 PGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKED 460 (527)
T ss_pred CCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCC
Confidence 12456665555543311000 011356888898888887665432
Q ss_pred CCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc
Q 019847 281 NSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 281 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 319 (335)
.....+. ..-.+.+++.++.||.++.+|..+++..-+.
T Consensus 461 ~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 461 FPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred CCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence 2211222 1124457778888999999999998776543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.9e-06 Score=69.17 Aligned_cols=95 Identities=17% Similarity=0.276 Sum_probs=81.4
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeeccccccee-EeeecCCCCCEEEEeeCCCcEEEEecccCCee
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVA-TSSWNHWNGHILTSGSKDKSIINHDVRVSNNV 136 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 136 (335)
...+.-+.|+|.-..+|.+..+|.+.+..++ .+.+..+.-+...++ +++|.| +|+.|+.|-.||+|++.|.+++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 3457889999999999999999999999988 777888886777777 999999 8999999999999999999988876
Q ss_pred eEEeecCCCCEEEEEeec
Q 019847 137 TSCIKAHSGEVCGLKWSN 154 (335)
Q Consensus 137 ~~~~~~~~~~i~~~~~~~ 154 (335)
..........|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 665555667788888864
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0013 Score=55.55 Aligned_cols=211 Identities=13% Similarity=0.128 Sum_probs=111.4
Q ss_pred ceeEeeecCCCCCEEEEeeCCCcEEEEecccCC------------------------------------------eeeEE
Q 019847 102 RVATSSWNHWNGHILTSGSKDKSIINHDVRVSN------------------------------------------NVTSC 139 (335)
Q Consensus 102 ~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------------------------------------------~~~~~ 139 (335)
.|+.+.|.+ +...|++|...|.|.+|.....+ .+...
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 477888888 77788888888888888653221 11122
Q ss_pred eecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccC------CCCCeeEEEecC-----CC--CcEEE
Q 019847 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD------HCGGVKALAWSP-----HQ--VNVLA 206 (335)
Q Consensus 140 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~v~~~~~~~-----~~--~~~~~ 206 (335)
+....++|++++.|. =.++|.|..+|.+.|.|+|.+..... ..+.. ....++++.|.- |+ .-++.
T Consensus 82 ~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 334578899999874 45899999999999999986432111 11111 344577888751 22 12344
Q ss_pred EecCCCCCeEEEEECCC---CceE----EEe-ecCCcEeEEE-eCCCCceeeee--------------eeeeeecCCCeE
Q 019847 207 TGGGREDGCIKIWNVQK---GTCI----HGI-DAKAQICGLE-WNRHHKEILSG--------------HGFSASGDGNKL 263 (335)
Q Consensus 207 ~~~g~~d~~i~i~d~~~---~~~~----~~~-~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~~~~~~i 263 (335)
+|. ..|.+.+|.+.- +... ... ....++..+. ++.+...-+.. ..+.....+..+
T Consensus 160 vGT--n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i 237 (395)
T PF08596_consen 160 VGT--NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI 237 (395)
T ss_dssp EEE--TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred EEe--CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence 443 789999998741 2111 111 2234444433 22221111110 113334558999
Q ss_pred EEEECCCCceeecccCCCCceeEeEE-----cCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 264 CLWKYPNMTKVGELQSSNSRILDLSQ-----SPDGLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 264 ~i~d~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
+++...+.+.........-....+.+ ...+..|++-..+|.+++|.+..-++..
T Consensus 238 rv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~ 296 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIK 296 (395)
T ss_dssp EEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEE
T ss_pred EEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhh
Confidence 99999887776554432222334444 2356778888999999999998755443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0016 Score=53.94 Aligned_cols=132 Identities=15% Similarity=0.149 Sum_probs=87.1
Q ss_pred CeEEEEEecCC-----ceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce-eEeeec-ccccceeEeee
Q 019847 36 PVLFLWKWENG-----KVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK-LVRNLE-GHHRRVATSSW 108 (335)
Q Consensus 36 ~~i~vw~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~-~~~~~v~~~~~ 108 (335)
|.|.++++... ++..... ....++|++++-- ++ +|+++. .+.|.+|++...+ ....-. .....+.++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999999884 3333333 2346788888765 33 465554 5789999998777 433322 12335666665
Q ss_pred cCCCCCEEEEeeCCCcEEEEecccCCe-eeEE-eecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 109 NHWNGHILTSGSKDKSIINHDVRVSNN-VTSC-IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 109 ~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
.+++++.|.....+.++..+.... +... .......++++.+-++++.++.+..+|.+.++...
T Consensus 138 ---~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 138 ---FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ---ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ---cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 456999999989898886654333 2222 22235568888888666799999999999999876
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0006 Score=45.27 Aligned_cols=100 Identities=15% Similarity=0.188 Sum_probs=69.4
Q ss_pred ceEEEEcC---CC-CEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee
Q 019847 61 PTSVSWSH---DA-KTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV 136 (335)
Q Consensus 61 v~~~~~~~---~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 136 (335)
|+++++.. +| +.|++|+.|..|++|+ ..+.+.++. ....|+++.-.. +..|+.+..+|+|-+|+-.. .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~--Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQ--RL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcC--CCEEEEEecCCEEEEEeCcc--ee
Confidence 56666654 32 5899999999999997 346777776 446777777764 47899999999999998632 22
Q ss_pred eEEeecCCCCEEEEEeec-CC---CEEEEEeCCCeEE
Q 019847 137 TSCIKAHSGEVCGLKWSN-EG---NLLASGGDDNVVR 169 (335)
Q Consensus 137 ~~~~~~~~~~i~~~~~~~-~~---~~l~~~~~dg~i~ 169 (335)
.+.. .+..+.++++.. ++ ..|++|-.+|.|-
T Consensus 75 WRiK--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIK--SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeec--cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2322 233366666654 22 3788888888774
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0012 Score=59.97 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=94.5
Q ss_pred cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCC-------CCEEEEEECCCcEEEEeCCCc--eeEee-e--ccccc
Q 019847 34 LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHD-------AKTLAVGYMDSKLQLWDAETS--KLVRN-L--EGHHR 101 (335)
Q Consensus 34 ~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~dg~i~iw~~~~~--~~~~~-~--~~~~~ 101 (335)
..+.|+-.|++.|++.....+.. ..+|.. +.|+ ....+.|-.+..+..||.+-. +++.. . .....
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~-~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHD-DIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCC-CcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 35789999999999988777632 223444 4443 335677778889999998753 23321 1 12334
Q ss_pred ceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 102 RVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 102 ~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
...|++-. ...+||+|+.+|.|++||-- +......+.+...+|..|..+.||+++++.+ +..+.+++.
T Consensus 579 ~Fs~~aTt--~~G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATT--EDGYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CceEEEec--CCceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 56666665 56789999999999999953 4445566777889999999999999998777 567778775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0071 Score=53.51 Aligned_cols=251 Identities=14% Similarity=0.131 Sum_probs=137.4
Q ss_pred eeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC--CCCEEEEEEC------CCcEEEEeCCCceeE
Q 019847 22 IDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH--DAKTLAVGYM------DSKLQLWDAETSKLV 93 (335)
Q Consensus 22 ~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~------dg~i~iw~~~~~~~~ 93 (335)
+...++.+++++.++.+.-.|.++|+..-......+... ..+.-+| .+..++++.. +|.|.-+|.++|+.+
T Consensus 116 ~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~-~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 116 VALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAG-YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred ceEECCEEEEEcCCCEEEEEECCCCCEEeeccccccccc-ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCcee
Confidence 345567788888999999999999998655544322211 1111122 2335555542 689999999999988
Q ss_pred eeeccccc-------------------------------cee-EeeecCCCCCEEEEeeCC-----C-----------cE
Q 019847 94 RNLEGHHR-------------------------------RVA-TSSWNHWNGHILTSGSKD-----K-----------SI 125 (335)
Q Consensus 94 ~~~~~~~~-------------------------------~v~-~~~~~~~~~~~l~~~~~d-----g-----------~i 125 (335)
..+..-.. .+. .+.+.+ ...+++.+..+ + .|
T Consensus 195 W~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~ 273 (527)
T TIGR03075 195 WRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSI 273 (527)
T ss_pred EeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeE
Confidence 76543211 111 224555 45555555422 2 56
Q ss_pred EEEecccCCeeeEEee-cCC-------CCEEEEEeecCCC---EEEEEeCCCeEEEEEccCCCcccce-----eec----
Q 019847 126 INHDVRVSNNVTSCIK-AHS-------GEVCGLKWSNEGN---LLASGGDDNVVRIWERSKMSSSKSL-----HRF---- 185 (335)
Q Consensus 126 ~~~d~~~~~~~~~~~~-~~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~---- 185 (335)
.-.|+++++..-.... .|. ....-+....+|+ .++.+..+|.+++.|-++++..... ...
T Consensus 274 vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~ 353 (527)
T TIGR03075 274 VARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGV 353 (527)
T ss_pred EEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccccc
Confidence 6777777765433211 121 1111222224565 7889999999999998765431000 000
Q ss_pred cCCC---------------------------CC--eeEEEecCCCCcEEEEecC--------------------------
Q 019847 186 TDHC---------------------------GG--VKALAWSPHQVNVLATGGG-------------------------- 210 (335)
Q Consensus 186 ~~~~---------------------------~~--v~~~~~~~~~~~~~~~~~g-------------------------- 210 (335)
.... +. -..++++|+...+++-..-
T Consensus 354 ~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (527)
T TIGR03075 354 DLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIK 433 (527)
T ss_pred CCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccC
Confidence 0000 00 0124556655433332210
Q ss_pred ----CCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC
Q 019847 211 ----REDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 211 ----~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 280 (335)
..-|.|.-+|+.+++..-..+...+...-...-.+.. +..++.+|.++.+|.++++.+.+++-.
T Consensus 434 p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~l------vf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 434 PPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDL------VFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCCCCCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcE------EEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 0125678888888888776654432111111112222 233467999999999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.4e-05 Score=42.33 Aligned_cols=38 Identities=29% Similarity=0.562 Sum_probs=32.9
Q ss_pred ceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 272 TKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
++...+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34555667888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00028 Score=59.36 Aligned_cols=144 Identities=15% Similarity=0.180 Sum_probs=100.0
Q ss_pred CCCEEE-EEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCC-------CEEEEeeCCCcEEEEecccCCe-eeEE
Q 019847 69 DAKTLA-VGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNG-------HILTSGSKDKSIINHDVRVSNN-VTSC 139 (335)
Q Consensus 69 ~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~l~~~~~dg~i~~~d~~~~~~-~~~~ 139 (335)
+.++|+ .+.....++-.|++.|+.+.+++-+.. |.-+.+.| +. ..-+.|-.+..|.-||.+-... .+..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 444444 444556788889999999999987665 77777766 32 2234567788999999985443 2222
Q ss_pred eecCC----CCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe
Q 019847 140 IKAHS----GEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215 (335)
Q Consensus 140 ~~~~~----~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 215 (335)
.+.|. ....|.+-..+ .++++|+.+|.|++||-- + ......+.+...+|..+..+.+|+++++++ +..
T Consensus 422 ~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri-~--~~AKTAlPgLG~~I~hVdvtadGKwil~Tc----~ty 493 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRI-G--RRAKTALPGLGDAIKHVDVTADGKWILATC----KTY 493 (644)
T ss_pred eeccccccccccceeeecCC-ceEEEeecCCcEEeehhh-h--hhhhhcccccCCceeeEEeeccCcEEEEec----ccE
Confidence 23332 33455554444 489999999999999952 2 222334566778899999999999999986 788
Q ss_pred EEEEECC
Q 019847 216 IKIWNVQ 222 (335)
Q Consensus 216 i~i~d~~ 222 (335)
+.+.++.
T Consensus 494 LlLi~t~ 500 (644)
T KOG2395|consen 494 LLLIDTL 500 (644)
T ss_pred EEEEEEe
Confidence 8888764
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0063 Score=54.34 Aligned_cols=204 Identities=14% Similarity=0.171 Sum_probs=112.3
Q ss_pred CCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEee------CCC--cEEEEecccCCeeeEEeecCCCCEEEE
Q 019847 79 DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS------KDK--SIINHDVRVSNNVTSCIKAHSGEVCGL 150 (335)
Q Consensus 79 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~ 150 (335)
+|.+.-.+-..-..+.-..+....+...+.+| +++.++... .|. .+.+++. +........+ ...+.-
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~lt~g--~~~t~P 402 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQVLEG--HSLTRP 402 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC--CCcceeeecC--CCCCCc
Confidence 66665554322223322223334678889999 777766554 243 4555554 3322332222 237888
Q ss_pred EeecCCCEEEEEeCC------------CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEE
Q 019847 151 KWSNEGNLLASGGDD------------NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKI 218 (335)
Q Consensus 151 ~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i 218 (335)
.|+|+|+.+++.... +.+.+.+++.+.. .. ...+.|..+.|+|||.++++.. ++.|++
T Consensus 403 sWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~----~~--~~~g~Issl~wSpDG~RiA~i~----~g~v~V 472 (591)
T PRK13616 403 SWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV----AS--RVPGPISELQLSRDGVRAAMII----GGKVYL 472 (591)
T ss_pred eECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchh----hh--ccCCCcCeEEECCCCCEEEEEE----CCEEEE
Confidence 999998888777533 2232223322111 10 2346799999999999888875 477777
Q ss_pred ---EECCCCce-E---EEee--cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccC--CCCceeEe
Q 019847 219 ---WNVQKGTC-I---HGID--AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS--SNSRILDL 287 (335)
Q Consensus 219 ---~d~~~~~~-~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~~ 287 (335)
-....|+. + ..+. ....+..+.|.+++..+ ++. .+.+..+...++...... .+.. ...++..+
T Consensus 473 a~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~----~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~v 546 (591)
T PRK13616 473 AVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGR----SDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAV 546 (591)
T ss_pred EEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEe----cCCCCceEEEecCCcccc-ccCCCCccCceEEE
Confidence 55445541 1 1111 12336889999999855 331 133444555555433322 2222 24567788
Q ss_pred EEcCCCCEEEEEeCCCcE
Q 019847 288 SQSPDGLTVATAGADETI 305 (335)
Q Consensus 288 ~~~~~~~~l~~~~~dg~v 305 (335)
+-+++ -++....+|.+
T Consensus 547 aa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 547 AASPS--TVYVTDARAVL 562 (591)
T ss_pred ecCCc--eEEEEcCCceE
Confidence 87764 45556666643
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0052 Score=49.95 Aligned_cols=200 Identities=13% Similarity=0.086 Sum_probs=114.4
Q ss_pred eecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeecc
Q 019847 107 SWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFT 186 (335)
Q Consensus 107 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 186 (335)
.|.+..+.++.+--..+.|.-|+..++.. ..+ .+.+.+.++..-..+..|+++.. .+.+++.+.......+....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~-~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK--RVF-PSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce--EEE-ECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 46664444666767788888898875543 222 23444455555445555555542 35666654332212222211
Q ss_pred -C-CCCCeeEEEecCCCCcEEEEec----C----CCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeee
Q 019847 187 -D-HCGGVKALAWSPHQVNVLATGG----G----REDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFS 255 (335)
Q Consensus 187 -~-~~~~v~~~~~~~~~~~~~~~~~----g----~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 255 (335)
+ .....+.+...|+|...+.+.+ + ..-|.++.+|. .+..++.+.. -...+.++|||+++.++...
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aD--- 181 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD--- 181 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEe---
Confidence 1 1234567889999865554432 0 11243444443 4555555444 34567899999999887653
Q ss_pred eecCCCeEEEEECCC--Cce-----eecccCCCCceeEeEEcCCCCEEEEEeCCC-cEEEEecCCCCCCCC
Q 019847 256 ASGDGNKLCLWKYPN--MTK-----VGELQSSNSRILDLSQSPDGLTVATAGADE-TIRFWEAFGPSGDED 318 (335)
Q Consensus 256 ~~~~~~~i~i~d~~~--~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~v~iw~~~~~~~~~~ 318 (335)
+..+.|.-|++.. +.. ...+....+..-.++...+|.+.+++..+| .|.+|+.+ ++....
T Consensus 182 --T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~ 249 (307)
T COG3386 182 --TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGE 249 (307)
T ss_pred --CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEE
Confidence 4568888887752 111 122223445566788888898876555554 89999988 444333
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0036 Score=55.83 Aligned_cols=195 Identities=13% Similarity=0.092 Sum_probs=102.8
Q ss_pred CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE------CCC--cEEEEeCCCceeEeeecccccceeEe
Q 019847 35 GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY------MDS--KLQLWDAETSKLVRNLEGHHRRVATS 106 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg--~i~iw~~~~~~~~~~~~~~~~~v~~~ 106 (335)
+|.+.-.+ .+...+.-...+....+...+++|+|+.++... .|+ .|.+++.. +.. ..+.. ....+.-
T Consensus 328 ~G~l~~~~--~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~P 402 (591)
T PRK13616 328 DGSLVSVD--GQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRP 402 (591)
T ss_pred CCeEEEec--CCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCc
Confidence 66664433 333222222223334678999999999887765 243 45555542 222 33322 2247888
Q ss_pred eecCCCCCEEEEeeCC------------CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 107 SWNHWNGHILTSGSKD------------KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 107 ~~~~~~~~~l~~~~~d------------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
.|+| ++..+++.... +.+.+.+++.+.. .. ...+.|..+.|||||..++... +|.|++=-+.
T Consensus 403 sWsp-DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~-~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vv 476 (591)
T PRK13616 403 SWSL-DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV-AS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVE 476 (591)
T ss_pred eECC-CCCceEEEecCcceEEEeccCCCceEEEEeccCchh-hh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEE
Confidence 9999 77766665432 2333334332221 11 3356799999999999998876 5777773332
Q ss_pred CCCccc-ce---eecc-CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec---CCcEeEEEeCC
Q 019847 175 KMSSSK-SL---HRFT-DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA---KAQICGLEWNR 243 (335)
Q Consensus 175 ~~~~~~-~~---~~~~-~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~ 243 (335)
...... .+ ..+. .-...+..+.|.+++. |++... ..+..+...++.... ...+.. ..++..++-++
T Consensus 477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~V~~~-~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 477 QTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS-LVVGRS-DPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASP 550 (591)
T ss_pred eCCCCceeecccEEeecccCCccccceEecCCE-EEEEec-CCCCceEEEecCCcc-ccccCCCCccCceEEEecCC
Confidence 221121 11 1122 2233468899999986 444332 133444444444222 212122 33455565554
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00083 Score=56.61 Aligned_cols=135 Identities=13% Similarity=0.153 Sum_probs=96.2
Q ss_pred ecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCC-------EEEEEECCCcEEEEeCCCcee--Eeeeccc----
Q 019847 33 ALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAK-------TLAVGYMDSKLQLWDAETSKL--VRNLEGH---- 99 (335)
Q Consensus 33 ~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~iw~~~~~~~--~~~~~~~---- 99 (335)
.....++-.|++.|+......+. .+ |+-+.+.|+.+ .-+.|-.|..|.-||.+-... +...+.|
T Consensus 353 ~~~~~l~klDIE~GKIVeEWk~~--~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~ 429 (644)
T KOG2395|consen 353 GEQDKLYKLDIERGKIVEEWKFE--DD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYST 429 (644)
T ss_pred CCcCcceeeecccceeeeEeecc--CC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccc
Confidence 34567888999999988877763 22 77888888653 234566788999999863221 2112222
Q ss_pred ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 100 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
.....|.+-. ...++++|+.+|.|++||- .+......+++...+|..+..+.+|++++..+ +..+.+-++.
T Consensus 430 k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 430 KNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccceeeec--CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 2233444433 5678999999999999997 46666677888899999999999999888766 6677777754
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0087 Score=48.69 Aligned_cols=199 Identities=15% Similarity=0.134 Sum_probs=117.1
Q ss_pred cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeeccc-----ccceeEeee
Q 019847 34 LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH-----HRRVATSSW 108 (335)
Q Consensus 34 ~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~~~v~~~~~ 108 (335)
..+.|.-|+..+++. ..+..+ +.+.++..-..+..|+++. . -+.+++.+++.....+... ....+.+..
T Consensus 45 ~~~~i~r~~~~~g~~-~~~~~p---~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v 118 (307)
T COG3386 45 LGGRIHRLDPETGKK-RVFPSP---GGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVV 118 (307)
T ss_pred CCCeEEEecCCcCce-EEEECC---CCcccceeecCCCeEEEEc-c-ccEEEeccCCceeEEeccccCCCCcCCCCceeE
Confidence 678889998887764 233333 2334444444444555552 3 4777777666553333211 134556777
Q ss_pred cCCCCCEEEEeeC-----C----CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC-CeEEEEEccC--C
Q 019847 109 NHWNGHILTSGSK-----D----KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD-NVVRIWERSK--M 176 (335)
Q Consensus 109 ~~~~~~~l~~~~~-----d----g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iwd~~~--~ 176 (335)
.| ++.+.++... . ..-.+|.+.......+....+-..-+.|+||||++.|..+... +.|.-|++.. .
T Consensus 119 ~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g 197 (307)
T COG3386 119 DP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATG 197 (307)
T ss_pred cC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccC
Confidence 77 6766665444 0 1113444442333345455555566889999999888777654 7788887652 1
Q ss_pred Ccc--cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC-eEEEEECCCCceEEEeecC-CcEeEEEeCC
Q 019847 177 SSS--KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG-CIKIWNVQKGTCIHGIDAK-AQICGLEWNR 243 (335)
Q Consensus 177 ~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~-~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~ 243 (335)
... .....+....+..-.++...+|. +.+++. .+| .|.+|+.. ++.+..++.+ ..+++++|--
T Consensus 198 ~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~--~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 198 PIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAV--WGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred ccCCcceEEEccCCCCCCCceEEeCCCC-EEEecc--cCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 111 11222223455666788888885 443332 333 99999988 9999988877 6677777643
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00011 Score=62.79 Aligned_cols=93 Identities=23% Similarity=0.418 Sum_probs=75.5
Q ss_pred CCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCee-EEEecCCCCcEEEEecCCCCCeEEEEECC
Q 019847 144 SGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVK-ALAWSPHQVNVLATGGGREDGCIKIWNVQ 222 (335)
Q Consensus 144 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 222 (335)
...+.-+.|+|.-.++|.+..+|.|.+..++ .+.+.++.-+...++ +++|.|||+ +++.|- .||+|++-|.+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~--kdG~I~L~Dve 92 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPDGK-LLAVGF--KDGTIRLHDVE 92 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCCCC-EEEEEe--cCCeEEEEEcc
Confidence 4467789999999999999999999998866 355667765666777 999999985 677765 89999999999
Q ss_pred CCceEEE--eecCCcEeEEEeCC
Q 019847 223 KGTCIHG--IDAKAQICGLEWNR 243 (335)
Q Consensus 223 ~~~~~~~--~~~~~~~~~~~~~~ 243 (335)
++..+.. +....++.++.|++
T Consensus 93 ~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 93 KGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCCceeccccccccchheeeccc
Confidence 9988877 44566788888864
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0024 Score=56.87 Aligned_cols=179 Identities=9% Similarity=0.034 Sum_probs=92.6
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCC-----cEEEEeCCCceeEe--eecccccceeEeeec
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDS-----KLQLWDAETSKLVR--NLEGHHRRVATSSWN 109 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~ 109 (335)
.+..||..+++......++........+ .-+++..+.|+.++ .+..||..+.+-.. .+.........+..
T Consensus 321 ~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~- 397 (557)
T PHA02713 321 KVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL- 397 (557)
T ss_pred eEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE-
Confidence 5778888777654443332222222222 23677778887654 48889988764332 22211112222222
Q ss_pred CCCCCEEEEeeCCC-----------------------cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC
Q 019847 110 HWNGHILTSGSKDK-----------------------SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN 166 (335)
Q Consensus 110 ~~~~~~l~~~~~dg-----------------------~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 166 (335)
++.+.+.|+.++ .+..||..+....... .........-...-++++.+.|+.++
T Consensus 398 --~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~-~m~~~r~~~~~~~~~~~IYv~GG~~~ 474 (557)
T PHA02713 398 --DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP-NFWTGTIRPGVVSHKDDIYVVCDIKD 474 (557)
T ss_pred --CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC-CCCcccccCcEEEECCEEEEEeCCCC
Confidence 778888887653 4777887765432111 11111111111223567777776542
Q ss_pred ------eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC--eEEEEECCCCce
Q 019847 167 ------VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG--CIKIWNVQKGTC 226 (335)
Q Consensus 167 ------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~ 226 (335)
.+..||.++...+..+..+.........+.+ +..+.++|+ .++ .+..||..+.+-
T Consensus 475 ~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg--~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 475 EKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHC--YESYMLQDTFNVYTYEW 537 (557)
T ss_pred CCccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEee--ecceeehhhcCcccccc
Confidence 4678887752234444444333333333333 336888876 666 677777766543
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0035 Score=41.73 Aligned_cols=102 Identities=21% Similarity=0.241 Sum_probs=63.3
Q ss_pred eeEeeecCC---CCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcc
Q 019847 103 VATSSWNHW---NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSS 179 (335)
Q Consensus 103 v~~~~~~~~---~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 179 (335)
|+++++... ..+.|++|+.|..|++|+- ..+..... ....|++++-... ..++.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~---~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~---- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG---DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ---- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC---CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc----
Confidence 455655442 3378999999999999984 33344333 4556777776655 6799999999999998422
Q ss_pred cceeeccCCCCCeeEEEecC---CCCcEEEEecCCCCCeEE
Q 019847 180 KSLHRFTDHCGGVKALAWSP---HQVNVLATGGGREDGCIK 217 (335)
Q Consensus 180 ~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~g~~d~~i~ 217 (335)
.+-..+. +..+.++.+.. +|..-+++|- .+|.|-
T Consensus 73 -RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~Gw--snGkve 109 (111)
T PF14783_consen 73 -RLWRIKS-KNQVTSMAFYDINGDGVPELIVGW--SNGKVE 109 (111)
T ss_pred -eeeeecc-CCCeEEEEEEcCCCCCceEEEEEe--cCCeEE
Confidence 2333332 23355555433 3333444443 677664
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0001 Score=38.81 Aligned_cols=36 Identities=33% Similarity=0.768 Sum_probs=31.8
Q ss_pred eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE
Q 019847 137 TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172 (335)
Q Consensus 137 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 172 (335)
...+..|...|.++.|+++++.+++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 445567888999999999989999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.011 Score=46.14 Aligned_cols=214 Identities=14% Similarity=0.173 Sum_probs=127.8
Q ss_pred ceeEeeecccccceeEeeecCCCCCEEEEeeCCCc-EEEEecccCCeeeEEeecCCC-CEEEEEeecCCCEEEEEeCC--
Q 019847 90 SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKS-IINHDVRVSNNVTSCIKAHSG-EVCGLKWSNEGNLLASGGDD-- 165 (335)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d-- 165 (335)
|+.+.... -...-..+.++|..+.-++.+-.-|+ ..++|......+......... ---.=.|||||.+|...-.|
T Consensus 58 Gk~v~~~~-lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd 136 (366)
T COG3490 58 GKIVFATA-LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFD 136 (366)
T ss_pred Cceeeeee-cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCC
Confidence 44443332 23445567888877777777777775 567888766554332211111 11224689999999876544
Q ss_pred ---CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC---------------CCCCeEEEEECCCCceE
Q 019847 166 ---NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG---------------REDGCIKIWNVQKGTCI 227 (335)
Q Consensus 166 ---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g---------------~~d~~i~i~d~~~~~~~ 227 (335)
|.|-+||.+.. .+.+-.+..|.-....+.|.+||..++.+.+| +..-++.+.|..+|+.+
T Consensus 137 ~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~li 214 (366)
T COG3490 137 PNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLI 214 (366)
T ss_pred CCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchh
Confidence 68999998843 45566777777777889999999766665431 11234556666666665
Q ss_pred EEeecC-----CcEeEEEeCCCCceeeeeee-------------------------------------------------
Q 019847 228 HGIDAK-----AQICGLEWNRHHKEILSGHG------------------------------------------------- 253 (335)
Q Consensus 228 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 253 (335)
.+...+ -.+..++..++|..++.+.+
T Consensus 215 ekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV 294 (366)
T COG3490 215 EKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLV 294 (366)
T ss_pred hhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeE
Confidence 544332 34666777777765554311
Q ss_pred eeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 254 FSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 254 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
..++-..+...+||..++..+....-.. ...++-... -++..+.+|.+.++.-
T Consensus 295 ~lTSP~GN~~vi~da~tG~vv~~a~l~d--aaGva~~~~--gf~vssg~G~~~~~s~ 347 (366)
T COG3490 295 ALTSPRGNRAVIWDAATGAVVSEAALPD--AAGVAAAKG--GFAVSSGQGRIIFYSR 347 (366)
T ss_pred EEecCCCCeEEEEEcCCCcEEecccccc--cccceeccC--ceEEecCCceEEeccc
Confidence 2234456677788888888765533211 222333333 3555667788887743
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0091 Score=53.28 Aligned_cols=181 Identities=15% Similarity=0.203 Sum_probs=102.0
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC------CcEEEEeCCCceeEe--eecccccceeEee
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD------SKLQLWDAETSKLVR--NLEGHHRRVATSS 107 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~--~~~~~~~~v~~~~ 107 (335)
..+..||..+++......++.... -.+++.. ++...++|+.| .++..||..+.+-.. .+...........
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRC-RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccc-cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence 478899999887766666653333 3344443 55778888888 357788887766433 2221222222222
Q ss_pred ecCCCCCEEEEeeCCC-----cEEEEecccCCeeeEEeecCCCCEEEEEee-cCCCEEEEEeCCC------eEEEEEccC
Q 019847 108 WNHWNGHILTSGSKDK-----SIINHDVRVSNNVTSCIKAHSGEVCGLKWS-NEGNLLASGGDDN------VVRIWERSK 175 (335)
Q Consensus 108 ~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg------~i~iwd~~~ 175 (335)
. ++.+.++|+.|| ++-.||..+.+... .............. -+|.+.++|+.++ ++..||..+
T Consensus 379 l---~g~iYavGG~dg~~~l~svE~YDp~~~~W~~--va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 379 L---DGKLYAVGGFDGEKSLNSVECYDPVTNKWTP--VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred E---CCEEEEEeccccccccccEEEecCCCCcccc--cCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 2 889999999997 46778877554321 11122223333322 2778888888664 467788664
Q ss_pred CCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC-----eEEEEECCCCceEEE
Q 019847 176 MSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG-----CIKIWNVQKGTCIHG 229 (335)
Q Consensus 176 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~-----~i~i~d~~~~~~~~~ 229 (335)
. .+..+..+........ ++.. +..+++.|+ .|+ ++..||.++.+-...
T Consensus 454 ~-~W~~~~~M~~~R~~~g-~a~~--~~~iYvvGG--~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 454 N-TWTLIAPMNTRRSGFG-VAVL--NGKIYVVGG--FDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred C-ceeecCCcccccccce-EEEE--CCEEEEECC--ccCCCccceEEEEcCCCCceeEc
Confidence 3 2333333322222222 2222 236888875 454 377788877655433
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.014 Score=45.06 Aligned_cols=145 Identities=12% Similarity=0.106 Sum_probs=90.7
Q ss_pred CCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEE
Q 019847 70 AKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCG 149 (335)
Q Consensus 70 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~ 149 (335)
..+++.|+..+.+.--|..+|+...+-. ....+.+-+.- -++.++.|...|.+++.+..++.+.........-.+ .
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV-R 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc-c
Confidence 4577888889999999999998876543 22333333332 467799999999999999998876544322222122 2
Q ss_pred EEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC
Q 019847 150 LKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224 (335)
Q Consensus 150 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 224 (335)
....+++..+..|+.|+..+..|.++ ...+...+-..+-..+-+..|-...++++. ..|.+.--....+
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~---~~cVykskcgG~~f~sP~i~~g~~sly~a~---t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKT---YGCVYKSKCGGGTFVSPVIAPGDGSLYAAI---TAGAVLAVTKNPY 167 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccc---cceEEecccCCceeccceecCCCceEEEEe---ccceEEEEccCCC
Confidence 33467899999999999999999776 334444333323333445556222344433 3455544444433
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.015 Score=45.50 Aligned_cols=218 Identities=12% Similarity=0.139 Sum_probs=119.1
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC-----CCcEEEEeCCCc-eeEeeecccccceeEeeec
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM-----DSKLQLWDAETS-KLVRNLEGHHRRVATSSWN 109 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~ 109 (335)
....++|.++.+...........-.--.=.|||||.+|.+.-. .|.|-|||...+ +.+.++..|.-....+.+.
T Consensus 91 tf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm 170 (366)
T COG3490 91 TFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLM 170 (366)
T ss_pred ceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEe
Confidence 3567778777664433322111111112369999999877643 478999998754 5677788888888899999
Q ss_pred CCCCCEEEEeeCC------------------CcEEEEecccCCeeeE-Eee--cCCCCEEEEEeecCCCEEEEEeCCCeE
Q 019847 110 HWNGHILTSGSKD------------------KSIINHDVRVSNNVTS-CIK--AHSGEVCGLKWSNEGNLLASGGDDNVV 168 (335)
Q Consensus 110 ~~~~~~l~~~~~d------------------g~i~~~d~~~~~~~~~-~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (335)
+ +++.++.+... -++.+.|..++..+.+ .+. .+.-.|..++..+||..++.+-..|.-
T Consensus 171 ~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~ 249 (366)
T COG3490 171 A-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPR 249 (366)
T ss_pred c-CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCC
Confidence 9 89888876421 1222333222222111 111 234456677777776655544332210
Q ss_pred -----EEEEccCCCcccceeecc-------CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcE
Q 019847 169 -----RIWERSKMSSSKSLHRFT-------DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQI 236 (335)
Q Consensus 169 -----~iwd~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~ 236 (335)
.+=-.+. .++++.+. .....|-+++.+.+...+.+++- ..+...+||..+|..+..-.... .
T Consensus 250 ~d~ppLvg~~~~---g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP--~GN~~vi~da~tG~vv~~a~l~d-a 323 (366)
T COG3490 250 NDLPPLVGHFRK---GEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSP--RGNRAVIWDAATGAVVSEAALPD-A 323 (366)
T ss_pred ccCCcceeeccC---CCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecC--CCCeEEEEEcCCCcEEecccccc-c
Confidence 0000001 11111111 12344667888877666666665 67788999999998875543211 1
Q ss_pred eEEEeCCCCceeeeeeeeeeecCCCeEEEEEC
Q 019847 237 CGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268 (335)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 268 (335)
..+.-. ...|.+++.+|.+.++.-
T Consensus 324 aGva~~--------~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 324 AGVAAA--------KGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred ccceec--------cCceEEecCCceEEeccc
Confidence 222211 122444466888888753
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.041 Score=50.46 Aligned_cols=292 Identities=10% Similarity=0.112 Sum_probs=161.3
Q ss_pred cCCCCcccccceeeeecCCceEEEecCCeEEEEEec--CCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEe
Q 019847 9 DAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWE--NGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 86 (335)
..+..|...-..++.-+...++++..||.+.-|.++ +++.....+..-...++.--.|+..++.-+.+..|.-..+|.
T Consensus 578 ~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~ 657 (1096)
T KOG1897|consen 578 SGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYS 657 (1096)
T ss_pred CCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEe
Confidence 334455554444444445678888899988766554 444433332222355666667776555444445566666665
Q ss_pred CCCceeEeeecccccceeEeeecCC-CCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC
Q 019847 87 AETSKLVRNLEGHHRRVATSSWNHW-NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD 165 (335)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 165 (335)
. +++++..--.-+..-..+.|+.+ -+..++.+ ..+.+++.-+..-+++....-.-......+++.+....+++.+.-
T Consensus 658 ~-n~kLv~spls~kev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r 735 (1096)
T KOG1897|consen 658 S-NGKLVYSPLSLKEVNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNR 735 (1096)
T ss_pred c-CCcEEEeccchHHhhhhcccccccCCceEEEe-cCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecc
Confidence 3 34443321111111112223321 23344444 345677766654333222222334455667777644444443321
Q ss_pred --------------CeEEEEEccCCCccccee--eccCC--CCCeeEEEecCCCCcEEEEecC--------CCCCeEEEE
Q 019847 166 --------------NVVRIWERSKMSSSKSLH--RFTDH--CGGVKALAWSPHQVNVLATGGG--------REDGCIKIW 219 (335)
Q Consensus 166 --------------g~i~iwd~~~~~~~~~~~--~~~~~--~~~v~~~~~~~~~~~~~~~~~g--------~~d~~i~i~ 219 (335)
..++++|-++. +.+. .+... ...+.++.|..|....++.|.+ ...|.|.+|
T Consensus 736 ~e~~~~~~~ee~~~s~l~vlD~nTf---~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivf 812 (1096)
T KOG1897|consen 736 IESSAEYYGEEYEVSFLRVLDQNTF---EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVF 812 (1096)
T ss_pred cccchhhcCCcceEEEEEEecCCce---eEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEE
Confidence 13566664432 1121 11111 1234555688775555555531 135788888
Q ss_pred ECCCCce---EEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEE
Q 019847 220 NVQKGTC---IHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTV 296 (335)
Q Consensus 220 d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 296 (335)
....+.. +......+.+.++.. -+|++++.- +..|++|++.+.+.++.-..+..++..+...-.|..+
T Consensus 813 e~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--------n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI 883 (1096)
T KOG1897|consen 813 EFEELNSLELVAETVVKGAVYALVE-FNGKLLAGI--------NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEI 883 (1096)
T ss_pred EEecCCceeeeeeeeeccceeehhh-hCCeEEEec--------CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEE
Confidence 8776332 233334455555543 245666543 7899999999998887777888889999999999999
Q ss_pred EEEeCCCcEEEEecCCCC
Q 019847 297 ATAGADETIRFWEAFGPS 314 (335)
Q Consensus 297 ~~~~~dg~v~iw~~~~~~ 314 (335)
++|.--+.+.+-.....+
T Consensus 884 ~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 884 AVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred EEeeccceEEEEEEeccC
Confidence 999888887776665544
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.031 Score=48.25 Aligned_cols=245 Identities=13% Similarity=0.112 Sum_probs=129.6
Q ss_pred eeeecCC-ceEEEe--cCC----eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCC-----------cE
Q 019847 21 VIDWGRN-NVLAVA--LGP----VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDS-----------KL 82 (335)
Q Consensus 21 ~~~~~~~-~~~~~~--~~~----~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~i 82 (335)
.+.++++ .+++.+ .+| .++++|+++++..... +.. .....+.|.++++.|+....+. .|
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4667763 444433 333 6999999999765432 111 1123499999988877765433 37
Q ss_pred EEEeCCCcee--Eeeecccccc--eeEeeecCCCCCEEEEeeCC----CcEEEEecccC---CeeeEEeecCCCCE-EEE
Q 019847 83 QLWDAETSKL--VRNLEGHHRR--VATSSWNHWNGHILTSGSKD----KSIINHDVRVS---NNVTSCIKAHSGEV-CGL 150 (335)
Q Consensus 83 ~iw~~~~~~~--~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~---~~~~~~~~~~~~~i-~~~ 150 (335)
+.|.+.+... ...+...... ...+..++ ++++++..... ..+.+.++... ......+......+ ..+
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 8888776532 2333333332 55777888 77776654322 34777787753 22233333334344 334
Q ss_pred EeecCCCEEEEEe---CCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC--CeEEEEECCCCc
Q 019847 151 KWSNEGNLLASGG---DDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED--GCIKIWNVQKGT 225 (335)
Q Consensus 151 ~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d--~~i~i~d~~~~~ 225 (335)
... .+.+++... ..+.|.-.++...........+..+...+.-..+...+.+|++... .+ ..|+++++..+.
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~--~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR--ENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEE--ETTEEEEEEEETT-TE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEE--ECCccEEEEEECCCCc
Confidence 333 444444443 2356777787765432222244445553333333344556777664 44 468899988445
Q ss_pred eEEEeec--CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee
Q 019847 226 CIHGIDA--KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV 274 (335)
Q Consensus 226 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 274 (335)
....+.. .+.+..+...+++..+... +.+-..-..+..||+.+++..
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~--~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFS--YSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEE--EEETTEEEEEEEEETTTTCEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEE--EeCCCCCCEEEEEECCCCCEE
Confidence 5444443 3345666666666655433 111233567888888877653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00017 Score=53.96 Aligned_cols=142 Identities=13% Similarity=0.099 Sum_probs=84.3
Q ss_pred eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc-eeEeeecccccceeEee
Q 019847 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-KLVRNLEGHHRRVATSS 107 (335)
Q Consensus 29 ~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~ 107 (335)
+.+.+.++.|+-+++...+...... .-|... .....-+..+++|+.+|.|.+|+.... .....+......|.++.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse-~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSE-RFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhh-hhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 5566677888877776544322111 112111 112224567899999999999987622 22222222233444444
Q ss_pred ecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCC-CCEEEEEeecCCCEEEEE--eCCCeEEEEEccC
Q 019847 108 WNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHS-GEVCGLKWSNEGNLLASG--GDDNVVRIWERSK 175 (335)
Q Consensus 108 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~--~~dg~i~iwd~~~ 175 (335)
-.-.++.+..++..+|.|+.|++...+. ......|. .++..+..+..++.++.+ |.|..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKV-LGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCce-eeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 3333566899999999999999985543 44444555 455555555556666666 6677777777654
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.026 Score=45.75 Aligned_cols=233 Identities=14% Similarity=0.179 Sum_probs=111.2
Q ss_pred cccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeec-CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce-eE
Q 019847 16 DYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVP-GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK-LV 93 (335)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~ 93 (335)
++...++++.++..++++..+ +.+...+.++.=....+. .-......+....++. ...++..|.|..=. +.|+ -.
T Consensus 61 ~~~l~~I~f~~~~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l~~~~G~iy~T~-DgG~tW~ 137 (302)
T PF14870_consen 61 DYHLNSISFDGNEGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS-AELAGDRGAIYRTT-DGGKTWQ 137 (302)
T ss_dssp --EEEEEEEETTEEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTE-EEEEETT--EEEES-STTSSEE
T ss_pred eeeEEEEEecCCceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc-EEEEcCCCcEEEeC-CCCCCee
Confidence 456777888877666666655 334444445432332221 1122233444433443 33334455433321 2222 22
Q ss_pred eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 94 RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
.........+..+.-++ ++.+++++..-....-||.-...- ..........|..+.|.|++.+.+.+ ..|.|+.=+.
T Consensus 138 ~~~~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~ 214 (302)
T PF14870_consen 138 AVVSETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD 214 (302)
T ss_dssp EEE-S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred EcccCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccc-eEEccCccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence 22344557788888888 899888887666667787542221 12223356789999999998766654 7888888771
Q ss_pred -cCCCcccc-eeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec----CCcEeEEEeCCCCce
Q 019847 174 -SKMSSSKS-LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA----KAQICGLEWNRHHKE 247 (335)
Q Consensus 174 -~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 247 (335)
...+.... +.......-.+..++|.+++ .+.++++ .|.+ +.....|+.=+..+. +.....+.|.+..+-
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg---~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~g 289 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPN-EIWAVGG---SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKG 289 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES---TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEE
T ss_pred CCCccccccccCCcccCceeeEEEEecCCC-CEEEEeC---CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCce
Confidence 11111111 11121223347899999886 4666664 5543 344555654444332 446788888877777
Q ss_pred eeeeeeeeeecCCCeEEEE
Q 019847 248 ILSGHGFSASGDGNKLCLW 266 (335)
Q Consensus 248 ~~~~~~~~~~~~~~~i~i~ 266 (335)
++.| .+|.+.-|
T Consensus 290 f~lG-------~~G~ll~~ 301 (302)
T PF14870_consen 290 FVLG-------QDGVLLRY 301 (302)
T ss_dssp EEE--------STTEEEEE
T ss_pred EEEC-------CCcEEEEe
Confidence 7765 47766544
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.03 Score=46.47 Aligned_cols=231 Identities=12% Similarity=0.108 Sum_probs=112.3
Q ss_pred eEEEEcCCCCEEEEEEC---CCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE
Q 019847 62 TSVSWSHDAKTLAVGYM---DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS 138 (335)
Q Consensus 62 ~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 138 (335)
+.=+|.++|+.|+.++. ...+.+.|+.+++..+.-.+..........+| +.+.++-......++-.|+++.+. ..
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~-~~ 116 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEE-RV 116 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--E-EE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCcCcE-EE
Confidence 34467889987777654 44678889999887665543333344566677 566665555567888999987654 34
Q ss_pred EeecCCCCEEEEEee--cCCCEEEEEeC----------------------CCeEEEEEccCCCcccceeeccCCCCCeeE
Q 019847 139 CIKAHSGEVCGLKWS--NEGNLLASGGD----------------------DNVVRIWERSKMSSSKSLHRFTDHCGGVKA 194 (335)
Q Consensus 139 ~~~~~~~~i~~~~~~--~~~~~l~~~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 194 (335)
.+......+-...|. .++..++-.-. ...|.--|+++++ ...+......+.-
T Consensus 117 vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~----~~~v~~~~~wlgH 192 (386)
T PF14583_consen 117 VYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE----RKVVFEDTDWLGH 192 (386)
T ss_dssp EEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT------EEEEEEESS-EEE
T ss_pred EEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc----eeEEEecCccccC
Confidence 444445555445554 35555443211 1123334444432 2222223456778
Q ss_pred EEecCCCCcEEEEec-CCC---CCeEEEEECCCCceEEEeec---CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEE
Q 019847 195 LAWSPHQVNVLATGG-GRE---DGCIKIWNVQKGTCIHGIDA---KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK 267 (335)
Q Consensus 195 ~~~~~~~~~~~~~~~-g~~---d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 267 (335)
+.|+|..+.+++-|- |.. |..|.+.+.. +.....+.. ...+..=-|.|+|..+..-. ...++.+..|.-+|
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~-~~~~~~~~~i~~~d 270 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDS-YTPGGQDFWIAGYD 270 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EEEEE-EETTT--EEEEEE-
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEEEEe-ecCCCCceEEEeeC
Confidence 899999888888763 112 2244444433 333333322 23455667999998886532 22345566788889
Q ss_pred CCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC
Q 019847 268 YPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302 (335)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 302 (335)
..+++....... .+...+..++||++++-=+.|
T Consensus 271 ~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 271 PDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCCceEEEeC--CceeeeEEcCCCCEEEecCCC
Confidence 988765432221 234566778899877644443
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.066 Score=49.22 Aligned_cols=306 Identities=12% Similarity=0.161 Sum_probs=162.3
Q ss_pred cccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCC--C----CEEEEEECCCcEEEE-eCC
Q 019847 16 DYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHD--A----KTLAVGYMDSKLQLW-DAE 88 (335)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~----~~l~~~~~dg~i~iw-~~~ 88 (335)
...+..+..+...++.++.++.+...++..+......+ ..-...|.|+.++|- + +++++|.++..+.+. -..
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~-~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSH-KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeee-heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 33344444444566677777777777777665332221 223567999999984 2 278888876655444 333
Q ss_pred CceeEeee----cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee---cCCCCEEEEEeec-------
Q 019847 89 TSKLVRNL----EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK---AHSGEVCGLKWSN------- 154 (335)
Q Consensus 89 ~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---~~~~~i~~~~~~~------- 154 (335)
+...+... +.-+..|.-..+-. +..+|.++..||.+.-|.+..........+ -...++.--.|+.
T Consensus 568 d~~~~~~~~l~~~~iPRSIl~~~~e~-d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vf 646 (1096)
T KOG1897|consen 568 DLILITHEQLSGEIIPRSILLTTFEG-DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVF 646 (1096)
T ss_pred CcceeeeeccCCCccchheeeEEeec-cceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEE
Confidence 33333222 11234455555554 578999999999988776643221111000 0011111111111
Q ss_pred ------------CC------------------------CEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEec
Q 019847 155 ------------EG------------------------NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWS 198 (335)
Q Consensus 155 ------------~~------------------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 198 (335)
++ ..|+.+. .+.+++..++.-.... +++. .-......+++.
T Consensus 647 a~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~-irtv-pl~~~prrI~~q 723 (1096)
T KOG1897|consen 647 ALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLH-IRTV-PLGESPRRICYQ 723 (1096)
T ss_pred EeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcc-eeee-cCCCChhheEec
Confidence 11 1222222 3345555444322211 2222 223456677777
Q ss_pred CCCCcEEEEecCC------------CCCeEEEEECCCCceEEEeecC-----CcEeEEEeCCC-Cceeeeeeeeeee---
Q 019847 199 PHQVNVLATGGGR------------EDGCIKIWNVQKGTCIHGIDAK-----AQICGLEWNRH-HKEILSGHGFSAS--- 257 (335)
Q Consensus 199 ~~~~~~~~~~~g~------------~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~--- 257 (335)
+.. .++.+.+.. .-..++++|-.+.+.+...+.. ..+.++.|..+ +.++++|..+.--
T Consensus 724 ~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ 802 (1096)
T KOG1897|consen 724 ESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDEN 802 (1096)
T ss_pred ccc-eEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCC
Confidence 743 333332200 0124777787777766555432 24666668877 7888888765432
Q ss_pred -cCCCeEEEEECCCCceeecccCC--CCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccce
Q 019847 258 -GDGNKLCLWKYPNMTKVGELQSS--NSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLK 330 (335)
Q Consensus 258 -~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~ 330 (335)
-..|.|.+|.+...+.+.....+ .+.+.++.. -+|++||.- +..|++|+....+.......+...+..+.
T Consensus 803 ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~ 875 (1096)
T KOG1897|consen 803 EPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALD 875 (1096)
T ss_pred CcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEE
Confidence 23588999988775544444332 234444432 256666654 46899999998866655555555544443
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.031 Score=49.96 Aligned_cols=235 Identities=15% Similarity=0.143 Sum_probs=119.0
Q ss_pred CCCCEEEEEECC------CcEEEEeCCCceeEeeecc-cccceeEeeecCCCCCEEEEeeCC-C-----cEEEEecccCC
Q 019847 68 HDAKTLAVGYMD------SKLQLWDAETSKLVRNLEG-HHRRVATSSWNHWNGHILTSGSKD-K-----SIINHDVRVSN 134 (335)
Q Consensus 68 ~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d-g-----~i~~~d~~~~~ 134 (335)
..+..++.|+.+ ..+..||..+++....... ....-.+++.. ++.+.++|+.| | ++..||..+..
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 345667777766 3678888887744332221 22333444444 67889999988 3 57788887665
Q ss_pred eeeEEeecCCCCEEEEEee-cCCCEEEEEeCCCe-----EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEe
Q 019847 135 NVTSCIKAHSGEVCGLKWS-NEGNLLASGGDDNV-----VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 135 ~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
... ...-..+-..+... -+|.+.|+|+.||. +-.||.++. ......... ..........-+..+.++|
T Consensus 361 W~~--~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~-~W~~va~m~---~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 361 WTP--VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN-KWTPVAPML---TRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred eec--cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCC-cccccCCCC---cceeeeEEEEECCEEEEEc
Confidence 321 11111111112222 26788999999874 677886643 223332222 1222333333334677777
Q ss_pred cCCCC----CeEEEEECCCCceEEEeecCC--cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeec--ccCC
Q 019847 209 GGRED----GCIKIWNVQKGTCIHGIDAKA--QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE--LQSS 280 (335)
Q Consensus 209 ~g~~d----~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~--~~~~ 280 (335)
+.+.. .++..||..+++-...-+... .-..++. -++...+.|. +...+....+..||..+.+-... +...
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG-~~~~~~~~~VE~ydp~~~~W~~v~~m~~~ 512 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGG-FDGTSALSSVERYDPETNQWTMVAPMTSP 512 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECC-ccCCCccceEEEEcCCCCceeEcccCccc
Confidence 51111 357788887765433322221 1122222 2333333331 00011123477888776544322 2222
Q ss_pred CCceeEeEEcCCCCEEEEEeCCC-----cEEEEecCCCC
Q 019847 281 NSRILDLSQSPDGLTVATAGADE-----TIRFWEAFGPS 314 (335)
Q Consensus 281 ~~~i~~~~~~~~~~~l~~~~~dg-----~v~iw~~~~~~ 314 (335)
...+-...+ ++...++|+.|| +|..||....+
T Consensus 513 rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 513 RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred cccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 222222222 566778888776 46677766554
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.037 Score=49.51 Aligned_cols=179 Identities=12% Similarity=0.115 Sum_probs=86.5
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC-----CcEEEEeCCCceeEee--ecccccceeEeeec
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD-----SKLQLWDAETSKLVRN--LEGHHRRVATSSWN 109 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~ 109 (335)
.+..||..+.+......++........+. -+++..+.|+.+ ..+..||..+.+.... +....... +++.
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~- 387 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN- 387 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-
Confidence 57888888877654433332222222222 267777788765 3577888876643321 11111111 1222
Q ss_pred CCCCCEEEEeeCC------CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC--------CeEEEEEccC
Q 019847 110 HWNGHILTSGSKD------KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD--------NVVRIWERSK 175 (335)
Q Consensus 110 ~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~ 175 (335)
- ++.+.+.|+.+ ..+..||+.+..............-.++ ...++..++.|+.+ ..+.+||..+
T Consensus 388 ~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 388 V-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred E-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 1 67777777742 3578888875443111000000001112 22356677777643 2378888765
Q ss_pred CCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCC----CCeEEEEECCCCce
Q 019847 176 MSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE----DGCIKIWNVQKGTC 226 (335)
Q Consensus 176 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~----d~~i~i~d~~~~~~ 226 (335)
.. ...+............+.+ ++ .+++.|+ .. .+.+.+||..+.+-
T Consensus 466 ~~-W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG-~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 466 NK-WTELSSLNFPRINASLCIF--NN-KIYVVGG-DKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred Cc-eeeCCCCCcccccceEEEE--CC-EEEEEcC-CcCCcccceeEEEeCCCCEE
Confidence 32 2222222111111122222 33 5666664 12 24678888776543
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.03 Score=50.08 Aligned_cols=224 Identities=9% Similarity=0.054 Sum_probs=107.5
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC------CcEEEEeCCCceeEe--eecccccceeEeee
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD------SKLQLWDAETSKLVR--NLEGHHRRVATSSW 108 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~--~~~~~~~~v~~~~~ 108 (335)
.+..||..+++......++..... .+++. -++...++|+.+ ..+..||..+.+... .+............
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 577888888876554444322211 22222 366777777753 347788887765322 12111112222222
Q ss_pred cCCCCCEEEEeeCCC-----cEEEEecccCCeeeEEeecCCCCE--EEEEeecCCCEEEEEeCCC---------------
Q 019847 109 NHWNGHILTSGSKDK-----SIINHDVRVSNNVTSCIKAHSGEV--CGLKWSNEGNLLASGGDDN--------------- 166 (335)
Q Consensus 109 ~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg--------------- 166 (335)
++.+.+.|+.++ .+..||..+..... ...-..+. .+++ .-++++.+.|+.++
T Consensus 351 ---~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~--~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~ 424 (557)
T PHA02713 351 ---DDTIYAIGGQNGTNVERTIECYTMGDDKWKM--LPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDM 424 (557)
T ss_pred ---CCEEEEECCcCCCCCCceEEEEECCCCeEEE--CCCCCcccccccEE-EECCEEEEEeCCCcccccccccccccccc
Confidence 778888888764 47889987654321 11111111 1111 23677778777553
Q ss_pred --------eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC-----CeEEEEECCC-CceE--EEe
Q 019847 167 --------VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED-----GCIKIWNVQK-GTCI--HGI 230 (335)
Q Consensus 167 --------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d-----~~i~i~d~~~-~~~~--~~~ 230 (335)
.+..||.++. .+..+..+....... +++.. ++ .+.+.|+ ..+ ..+..||.++ .+-. ..+
T Consensus 425 ~~~~~~~~~ve~YDP~td-~W~~v~~m~~~r~~~-~~~~~-~~-~IYv~GG-~~~~~~~~~~ve~Ydp~~~~~W~~~~~m 499 (557)
T PHA02713 425 EEDTHSSNKVIRYDTVNN-IWETLPNFWTGTIRP-GVVSH-KD-DIYVVCD-IKDEKNVKTCIFRYNTNTYNGWELITTT 499 (557)
T ss_pred cccccccceEEEECCCCC-eEeecCCCCcccccC-cEEEE-CC-EEEEEeC-CCCCCccceeEEEecCCCCCCeeEcccc
Confidence 4677886643 222232222111111 12222 23 5777764 111 2467888886 4332 222
Q ss_pred ecCCcEeEEEeCCCCceeeeeeeeeeecCCC--eEEEEECCCCceeecccCC
Q 019847 231 DAKAQICGLEWNRHHKEILSGHGFSASGDGN--KLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~ 280 (335)
+.+.....++.. +++..+.| +.++ .+..||..+.+-......|
T Consensus 500 ~~~r~~~~~~~~-~~~iyv~G------g~~~~~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 500 ESRLSALHTILH-DNTIMMLH------CYESYMLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred CcccccceeEEE-CCEEEEEe------eecceeehhhcCcccccccchhhhc
Confidence 222222222221 44444444 4444 6677777665544333333
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.048 Score=45.34 Aligned_cols=242 Identities=18% Similarity=0.240 Sum_probs=115.5
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEeCCCcee---Eeee----cccccceeEeeecCC---CCCEEEEeeCC-------
Q 019847 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL---VRNL----EGHHRRVATSSWNHW---NGHILTSGSKD------- 122 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~~l~~~~~d------- 122 (335)
..+.|+|.|+|+++++ ...|.|++++ ..+.. +..+ .........++++|. ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3688999999876665 5699999999 44443 2222 234467889999882 23444443321
Q ss_pred -CcEEEEecccC-------CeeeEEeec---CCCCEEEEEeecCCCEEEEEeCCC-------------eEEEEEccCCC-
Q 019847 123 -KSIINHDVRVS-------NNVTSCIKA---HSGEVCGLKWSNEGNLLASGGDDN-------------VVRIWERSKMS- 177 (335)
Q Consensus 123 -g~i~~~d~~~~-------~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg-------------~i~iwd~~~~~- 177 (335)
..|.-|..... +.+...... ....-..|.|.|||.+.++.+..+ .|.-.+....-
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 23444444332 112222222 233456799999997777665433 23333322100
Q ss_pred c----------ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc----------------------
Q 019847 178 S----------SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT---------------------- 225 (335)
Q Consensus 178 ~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~---------------------- 225 (335)
. ...+. -.++. ....++|+|....++++-.| .++.=.|--++.|.
T Consensus 161 ~dnP~~~~~~~~~~i~-A~GlR-N~~~~~~d~~tg~l~~~d~G-~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIY-AYGLR-NPFGLAFDPNTGRLWAADNG-PDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp TTSTTTTSTTSTTTEE-EE--S-EEEEEEEETTTTEEEEEEE--SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCccccCCCceEEEE-EeCCC-ccccEEEECCCCcEEEEccC-CCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 0 00000 01122 24578999983356555432 22222222222221
Q ss_pred -------eEEEeecCCcEeEEEeCCCCcee-eeeeeeeeecCCCeEEEEECCCCceeec----ccCCCCceeEeEEcCCC
Q 019847 226 -------CIHGIDAKAQICGLEWNRHHKEI-LSGHGFSASGDGNKLCLWKYPNMTKVGE----LQSSNSRILDLSQSPDG 293 (335)
Q Consensus 226 -------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~i~d~~~~~~~~~----~~~~~~~i~~~~~~~~~ 293 (335)
++..+..+..+..+.|.....+- .-+..+.+.-..+.|....+.....+.. +.....++.++++.|||
T Consensus 238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred CCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence 11122223344445544332210 0011122223466777777764433221 23445579999999999
Q ss_pred CEEEEEeCCCcEE
Q 019847 294 LTVATAGADETIR 306 (335)
Q Consensus 294 ~~l~~~~~dg~v~ 306 (335)
.++++-+.+|.|.
T Consensus 318 ~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 318 ALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEE-TTTTEE
T ss_pred eEEEEECCCCeEe
Confidence 9988888888774
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.042 Score=43.68 Aligned_cols=153 Identities=16% Similarity=0.110 Sum_probs=92.4
Q ss_pred CceEEEEcCCCCEEEEEE---CCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEe-cccCCe
Q 019847 60 YPTSVSWSHDAKTLAVGY---MDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHD-VRVSNN 135 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d-~~~~~~ 135 (335)
.+.+.+++++++.+|... ....++++. .+....... ....+..-.|.+ ++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcc
Confidence 688999999999887765 233455554 333333332 234788889999 677777766666666664 222222
Q ss_pred eeEEeec--CCCCEEEEEeecCCCEEEEEe---CCCeEEEEEccCCCcc------cceeeccCCCCCeeEEEecCCCCcE
Q 019847 136 VTSCIKA--HSGEVCGLKWSNEGNLLASGG---DDNVVRIWERSKMSSS------KSLHRFTDHCGGVKALAWSPHQVNV 204 (335)
Q Consensus 136 ~~~~~~~--~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~ 204 (335)
....... ....|..+.+||||..+|... .++.|.+--+...... ..+.........+..+.|.+++..+
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 1111111 122899999999999888776 3577887765543333 1122222335678999999998644
Q ss_pred EEEecCCCCCeEEE
Q 019847 205 LATGGGREDGCIKI 218 (335)
Q Consensus 205 ~~~~~g~~d~~i~i 218 (335)
+.... .++.+..
T Consensus 181 V~~~~--~~~~~~~ 192 (253)
T PF10647_consen 181 VLGRS--AGGPVVR 192 (253)
T ss_pred EEeCC--CCCceeE
Confidence 44432 4443443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.062 Score=45.20 Aligned_cols=174 Identities=14% Similarity=0.081 Sum_probs=87.3
Q ss_pred CeEEEEEecCCceeeEEeecC-CCCCceEEEEcCCCCEEEEEEC--------------------CCcEEEEeCCCceeEe
Q 019847 36 PVLFLWKWENGKVKKLLQVPG-EDDYPTSVSWSHDAKTLAVGYM--------------------DSKLQLWDAETSKLVR 94 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~--------------------dg~i~iw~~~~~~~~~ 94 (335)
|.+.+.|-++.+.+....... ....-+.+.|.|..+.+++... -.++.+||+.+.+.++
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q 236 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ 236 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee
Confidence 478888877777655554432 2334567888898888888632 3579999999999999
Q ss_pred eecccc--cceeEeeecC--CCCCEEEEeeCCCcEEEEecccCCe-----eeEEe----------------ecCCCCEEE
Q 019847 95 NLEGHH--RRVATSSWNH--WNGHILTSGSKDKSIINHDVRVSNN-----VTSCI----------------KAHSGEVCG 149 (335)
Q Consensus 95 ~~~~~~--~~v~~~~~~~--~~~~~l~~~~~dg~i~~~d~~~~~~-----~~~~~----------------~~~~~~i~~ 149 (335)
.+.-.. .....+.|.. ....-++.+.-..+|..|--..... ++..- ..-..-|+.
T Consensus 237 ~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD 316 (461)
T PF05694_consen 237 TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD 316 (461)
T ss_dssp EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence 887443 3466777754 2233344444555666554422221 11110 001345799
Q ss_pred EEeecCCCEEEEEe-CCCeEEEEEccCCCcccceeecc-C---------------CCCCeeEEEecCCCCcEEEEec
Q 019847 150 LKWSNEGNLLASGG-DDNVVRIWERSKMSSSKSLHRFT-D---------------HCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 150 ~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-~---------------~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
|..|.|.++|..+. .+|.|+.||+..+...+...... + -.+...-+..|-||+++.++.|
T Consensus 317 I~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 317 ILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred EEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 99999999887765 58999999999876655543321 0 1123356778888888888754
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.064 Score=45.11 Aligned_cols=252 Identities=14% Similarity=0.116 Sum_probs=113.1
Q ss_pred eEEEEEecC-----CceeeEEeecCCCCCceEEEEc-----------CCCCEEEEEE-CCCcEEEEeCCC----ceeEee
Q 019847 37 VLFLWKWEN-----GKVKKLLQVPGEDDYPTSVSWS-----------HDAKTLAVGY-MDSKLQLWDAET----SKLVRN 95 (335)
Q Consensus 37 ~i~vw~~~~-----~~~~~~~~~~~~~~~v~~~~~~-----------~~~~~l~~~~-~dg~i~iw~~~~----~~~~~~ 95 (335)
.+.+.|++. ++.+....++.-.+.....-|+ .+.++|+..+ ..+.|+|.|+.+ .++.+.
T Consensus 38 ~LatVDvdP~S~tYgqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~Kv 117 (461)
T PF05694_consen 38 YLATVDVDPDSPTYGQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKV 117 (461)
T ss_dssp EEEEEE--TTSTTTTSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEE
T ss_pred eEEEEECCCCCCCcccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEee
Confidence 355555543 4566666665545566666665 2456887777 678999999873 345555
Q ss_pred ecc---cc----cceeEeeecCCCCCEEEEeeC------CCcEEEEecccCCeeeEEeec---CCCCEEEEEeecCCCEE
Q 019847 96 LEG---HH----RRVATSSWNHWNGHILTSGSK------DKSIINHDVRVSNNVTSCIKA---HSGEVCGLKWSNEGNLL 159 (335)
Q Consensus 96 ~~~---~~----~~v~~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l 159 (335)
++. +. .....+-.-| ++++++++-. -|-+.++|-++.+. ...... ....-..+-|.|..+.+
T Consensus 118 Ie~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v-~g~We~~~~~~~~gYDfw~qpr~nvM 195 (461)
T PF05694_consen 118 IEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETFEV-KGRWEKDRGPQPFGYDFWYQPRHNVM 195 (461)
T ss_dssp E-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT--E-EEE--SB-TT------EEEETTTTEE
T ss_pred eCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccccc-cceeccCCCCCCCCCCeEEcCCCCEE
Confidence 542 11 2233344445 7888887532 24567777664332 222222 12334677888888888
Q ss_pred EEEeC--------------------CCeEEEEEccCCCcccceeeccCCC--CCeeEEEec--CCCCcEEEEecCCCCCe
Q 019847 160 ASGGD--------------------DNVVRIWERSKMSSSKSLHRFTDHC--GGVKALAWS--PHQVNVLATGGGREDGC 215 (335)
Q Consensus 160 ~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~--~~~~~~~~~~~g~~d~~ 215 (335)
++... ..++.+||+.+. +.++++.-.. .-...+.|. |+..+=++.+. ...+
T Consensus 196 iSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r---~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a--Lss~ 270 (461)
T PF05694_consen 196 ISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR---KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA--LSSS 270 (461)
T ss_dssp EE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT---EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE----EE
T ss_pred EEeccCChhhcccCCChhHhhcccccCeEEEEECCCC---cEeeEEecCCCCCceEEEEecCCCCccceEEEEe--ccce
Confidence 88642 357999998764 4444443222 224455554 44544444443 4555
Q ss_pred EEEEEC-CCCc----eEEEeec------------------CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc
Q 019847 216 IKIWNV-QKGT----CIHGIDA------------------KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 216 i~i~d~-~~~~----~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 272 (335)
|..|-- +.++ .+..+.. +.-++.+..|.+.++|..++ -..|.++.||+....
T Consensus 271 i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~-----W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 271 IWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSN-----WLHGDVRQYDISDPF 345 (461)
T ss_dssp EEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEE-----TTTTEEEEEE-SSTT
T ss_pred EEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEc-----ccCCcEEEEecCCCC
Confidence 555543 4432 1222211 23478999999999998764 569999999997632
Q ss_pred ---eeeccc----------------CCCCceeEeEEcCCCCEEEEEe
Q 019847 273 ---KVGELQ----------------SSNSRILDLSQSPDGLTVATAG 300 (335)
Q Consensus 273 ---~~~~~~----------------~~~~~i~~~~~~~~~~~l~~~~ 300 (335)
++.++. .-.+...-+..|.||+.|...+
T Consensus 346 ~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 346 NPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp S-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred CCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 222211 0112345678888998877654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00088 Score=37.13 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=29.9
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
...|.+++|+|..++||.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4443
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.006 Score=56.42 Aligned_cols=148 Identities=16% Similarity=0.088 Sum_probs=97.2
Q ss_pred CCceEEEEcCCCCEEEEEEC--CCcEEEEeCCCceeEe-----eec------ccccceeEeeecCCCCCEEEEeeCCCcE
Q 019847 59 DYPTSVSWSHDAKTLAVGYM--DSKLQLWDAETSKLVR-----NLE------GHHRRVATSSWNHWNGHILTSGSKDKSI 125 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~-----~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i 125 (335)
-++..+...+|+...++... +-.|..||+++-.... -+. .......++.|+|.-....+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 34556666778776655443 3378899987532211 111 2234567888998667778888899999
Q ss_pred EEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccC-CCCCeeEEEecCCCCcE
Q 019847 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD-HCGGVKALAWSPHQVNV 204 (335)
Q Consensus 126 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 204 (335)
++..+......... .......++++|+|.|+.++.|-..|++.-|...-. ....+..... ....|.+++|-....++
T Consensus 181 ~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEE
Confidence 99887654433332 234567899999999999999999999998875422 1112221111 24679999998877666
Q ss_pred EEEe
Q 019847 205 LATG 208 (335)
Q Consensus 205 ~~~~ 208 (335)
++-+
T Consensus 259 vvy~ 262 (1405)
T KOG3630|consen 259 VVYG 262 (1405)
T ss_pred EEec
Confidence 5554
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0008 Score=50.52 Aligned_cols=103 Identities=11% Similarity=0.165 Sum_probs=67.3
Q ss_pred CceEEEecCCeEEEEEecCC-ceeeEEeecCCCCCceEE-EEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccc-cce
Q 019847 27 NNVLAVALGPVLFLWKWENG-KVKKLLQVPGEDDYPTSV-SWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH-RRV 103 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~-~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~v 103 (335)
..+++++.+|.|++|++... ....... .-...|-++ .--.++.+..+++.||.|+.|++.-.+.+.....|. .++
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~--s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVC--SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhh--cccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 46888889999999998621 1111111 112223222 222355688899999999999999888887777777 555
Q ss_pred eEeeecCCCCCEEEEe--eCCCcEEEEeccc
Q 019847 104 ATSSWNHWNGHILTSG--SKDKSIINHDVRV 132 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~--~~dg~i~~~d~~~ 132 (335)
.....+. .+..+..+ +.|..++.|++..
T Consensus 149 e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 5555555 56666666 6777777777653
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0017 Score=59.46 Aligned_cols=108 Identities=17% Similarity=0.279 Sum_probs=75.8
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEeCCCc-eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEe
Q 019847 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETS-KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI 140 (335)
Q Consensus 62 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 140 (335)
..++-.-.+..++.|+..|.+-..|+... .+...-....++|++++|+. ++..++.|-.+|.|.+||+..++. .+.+
T Consensus 91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~-l~~i 168 (1206)
T KOG2079|consen 91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKI-LKVI 168 (1206)
T ss_pred ceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcc-eeee
Confidence 33333335667899999999999887643 21222233567999999998 999999999999999999986554 5556
Q ss_pred ecCCCCEEEEEe---ecCCCEEEEEeCCCeEEEEEc
Q 019847 141 KAHSGEVCGLKW---SNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 141 ~~~~~~i~~~~~---~~~~~~l~~~~~dg~i~iwd~ 173 (335)
..|..+.+.+-+ ..++..++++...|. +|.+
T Consensus 169 ~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 169 TEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 666665554443 345567888887776 5553
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0017 Score=36.01 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=28.7
Q ss_pred CCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 281 NSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 281 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
...|..++|+|...+||.++.||.|.+|++..
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 34689999999999999999999999999943
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.063 Score=40.93 Aligned_cols=135 Identities=10% Similarity=0.116 Sum_probs=86.8
Q ss_pred CCEEEEEeecCCCEEEEEeCC---------CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe
Q 019847 145 GEVCGLKWSNEGNLLASGGDD---------NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215 (335)
Q Consensus 145 ~~i~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 215 (335)
...+.-..+|+|++++-.-.| |.++.|-... .+..+...-+--+.++|+.+.+.+..+.+ .+-.
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-----~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs--ln~~ 181 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-----QVELIWNCVGISNGLAWDSDAKKFYYIDS--LNYE 181 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCC-----CceeeehhccCCccccccccCcEEEEEcc--CceE
Confidence 345556678999985432222 4455554321 12222222333467899999888888876 7888
Q ss_pred EEEEE--CCCCce-----EEEeecC-----CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCc
Q 019847 216 IKIWN--VQKGTC-----IHGIDAK-----AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSR 283 (335)
Q Consensus 216 i~i~d--~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 283 (335)
|.-|| ..+|.. +..++.. ...-.++...+|...++. -+.++|...|..+++.+.+++-....
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~------~ng~~V~~~dp~tGK~L~eiklPt~q 255 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT------FNGGTVQKVDPTTGKILLEIKLPTPQ 255 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE------ecCcEEEEECCCCCcEEEEEEcCCCc
Confidence 87787 555533 3333221 123345556666666555 45899999999999999999988889
Q ss_pred eeEeEEcCC
Q 019847 284 ILDLSQSPD 292 (335)
Q Consensus 284 i~~~~~~~~ 292 (335)
|++++|--.
T Consensus 256 itsccFgGk 264 (310)
T KOG4499|consen 256 ITSCCFGGK 264 (310)
T ss_pred eEEEEecCC
Confidence 999999643
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.019 Score=52.96 Aligned_cols=102 Identities=18% Similarity=0.328 Sum_probs=69.0
Q ss_pred CCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCC
Q 019847 112 NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGG 191 (335)
Q Consensus 112 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 191 (335)
.+..++.|+..|.+...|+...-.....-..-.++|++++|+.+|..++.|-.+|.|.+||+...+. ++.+..|..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~---l~~i~e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI---LKVITEHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc---eeeeeecCCc
Confidence 5667888999999999998754222222334567999999999999999999999999999887544 4444444443
Q ss_pred ---eeEEEecCCCCcEEEEecCCCCCeEEEEEC
Q 019847 192 ---VKALAWSPHQVNVLATGGGREDGCIKIWNV 221 (335)
Q Consensus 192 ---v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 221 (335)
+..+.+..++..++. +. ..|. +|.+
T Consensus 175 ~t~vi~v~~t~~nS~llt-~D--~~Gs--f~~l 202 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLT-SD--TGGS--FWKL 202 (1206)
T ss_pred cceEEEEEEeCCCcEEEE-cc--CCCc--eEEE
Confidence 444455555553444 21 3444 6654
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.013 Score=54.40 Aligned_cols=146 Identities=10% Similarity=0.077 Sum_probs=94.4
Q ss_pred CCEEEEEeecCCCEEEEE--eCCCeEEEEEccCCCcccce--eec------cCCCCCeeEEEecCCCCcEEEEecCCCCC
Q 019847 145 GEVCGLKWSNEGNLLASG--GDDNVVRIWERSKMSSSKSL--HRF------TDHCGGVKALAWSPHQVNVLATGGGREDG 214 (335)
Q Consensus 145 ~~i~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~--~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~d~ 214 (335)
-++..+...+|+...++. +.+-.|..||++........ ..+ ........++.|+|.-....+.+. .|+
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l--~dl 178 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL--SDL 178 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc--ccc
Confidence 456666667776655443 33447999998864332211 111 112234568889998665556555 799
Q ss_pred eEEEEECCCC-ceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccC----CCCceeEeEE
Q 019847 215 CIKIWNVQKG-TCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS----SNSRILDLSQ 289 (335)
Q Consensus 215 ~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~ 289 (335)
.|++..+... ..+..++.....++++|+|.|+.++.| ...|++.-|... ++....+.. ....|.++.|
T Consensus 179 sl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG------~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIG------RNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred chhhhhhhhhhhhhcccCcccceeeEEeccccceeeEe------cCCCeEEEeecc-cceeecccCCCcCCCcceeEEEE
Confidence 9999877543 233445667789999999999999998 568888888743 333233221 1357999999
Q ss_pred cCCCCEEEEE
Q 019847 290 SPDGLTVATA 299 (335)
Q Consensus 290 ~~~~~~l~~~ 299 (335)
-....++++-
T Consensus 252 l~t~eflvvy 261 (1405)
T KOG3630|consen 252 LSTQEFLVVY 261 (1405)
T ss_pred ecceeEEEEe
Confidence 8877777654
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.07 Score=40.32 Aligned_cols=147 Identities=12% Similarity=0.074 Sum_probs=87.7
Q ss_pred eeeecC-CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC---C---cEEEEe-CC----
Q 019847 21 VIDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD---S---KLQLWD-AE---- 88 (335)
Q Consensus 21 ~~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~iw~-~~---- 88 (335)
.++-++ +.++.+.....|.+|++...+......++. -+.|..+.++..|+||++--.+ . .+|+|- .+
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 355556 677777888999999999666666666654 3789999999999999996322 2 566662 11
Q ss_pred CceeEe-eec---------------------ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee---EEee--
Q 019847 89 TSKLVR-NLE---------------------GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT---SCIK-- 141 (335)
Q Consensus 89 ~~~~~~-~~~---------------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~---~~~~-- 141 (335)
..+++. .+- .-..++.+++..|..|++++.+ ++.+.+|.+....... ..+.
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~~~~lDFe 178 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEKFSFLDFE 178 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecccccEEech
Confidence 111111 010 1245778888888777777644 5678888775322100 0000
Q ss_pred ----cC-C-CCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 142 ----AH-S-GEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 142 ----~~-~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
.| . -....+++. +.++|..+ +-.++++.+
T Consensus 179 ~~l~~~~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 179 RSLIDHIDNFKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred hhhhheecCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 11 1 123444544 45777766 556777654
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.2 Score=43.74 Aligned_cols=153 Identities=15% Similarity=0.192 Sum_probs=92.2
Q ss_pred CCceEEEEcCCCCEEEEEE---CCCcEEEEeCCCceeEeeecccccceeEeeecCC---CCCEEEEeeCCCcEEEEeccc
Q 019847 59 DYPTSVSWSHDAKTLAVGY---MDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW---NGHILTSGSKDKSIINHDVRV 132 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~~~d~~~ 132 (335)
-++..++|. ||+.++-.. .+|.+++=| .+.+..| +.|..+.|.|. +..-+++......|.+|.+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 357889997 666554432 233333322 1233333 46888999883 233455556678999999852
Q ss_pred -----CCeeeEEeecC----CCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCc
Q 019847 133 -----SNNVTSCIKAH----SGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203 (335)
Q Consensus 133 -----~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 203 (335)
.+.+....-.. .---..+.|+|....|++-.....-.+++++.... .....+ ...+-|.|.+|.+||.+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQR 169 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCE
Confidence 12111111111 11224678999988888877665555666664332 222223 35678999999999999
Q ss_pred EEEEecCCCCCeEEEEECCC
Q 019847 204 VLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 204 ~~~~~~g~~d~~i~i~d~~~ 223 (335)
++++-+ ..=.-++||-..
T Consensus 170 LVVAvG--SsLHSyiWd~~q 187 (671)
T PF15390_consen 170 LVVAVG--SSLHSYIWDSAQ 187 (671)
T ss_pred EEEEeC--CeEEEEEecCch
Confidence 988875 555678898543
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0025 Score=57.41 Aligned_cols=158 Identities=18% Similarity=0.268 Sum_probs=94.3
Q ss_pred CeEEEEEec--CCceeeEEee---cCCCCCceEEEEcC---CCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEee
Q 019847 36 PVLFLWKWE--NGKVKKLLQV---PGEDDYPTSVSWSH---DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSS 107 (335)
Q Consensus 36 ~~i~vw~~~--~~~~~~~~~~---~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 107 (335)
|.+.||+++ .|++.+.+.+ ..-...+.-+.|+| +.-++..+-.++.+++.+..+... ..+..|...+..++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 578899876 4554333322 12234456666666 566778888889999888765443 55666888888888
Q ss_pred ecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCC--Ccccceeec
Q 019847 108 WNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM--SSSKSLHRF 185 (335)
Q Consensus 108 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~ 185 (335)
|.. .+-+.+.+ .+|||..|+++..||.+++|.+.-. ....+++..
T Consensus 232 ~~~-~g~~~l~~--------------------------------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhew 278 (1283)
T KOG1916|consen 232 FFA-EGVLKLAS--------------------------------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEW 278 (1283)
T ss_pred HHh-hchhhhee--------------------------------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhcc
Confidence 875 33222211 6789999999999998888875422 223445555
Q ss_pred cCCC-CCeeEEEecCC-------CCcEEEEecCCCCCeEEEEECCCCceE
Q 019847 186 TDHC-GGVKALAWSPH-------QVNVLATGGGREDGCIKIWNVQKGTCI 227 (335)
Q Consensus 186 ~~~~-~~v~~~~~~~~-------~~~~~~~~~g~~d~~i~i~d~~~~~~~ 227 (335)
+.|. .+-.|.-++.+ +.+.+...+...+..+++|.....+|+
T Consensus 279 kphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 279 KPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 6665 33323223322 111222221235677888887766665
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.12 Score=40.86 Aligned_cols=161 Identities=16% Similarity=0.222 Sum_probs=109.5
Q ss_pred CcccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc
Q 019847 13 LMEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 13 ~~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
......+.++.|+++ .++++.....-.|+=-..|+....+.+.+-.+ .-.+++..++++.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D-pE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-PETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCC-hhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 334455888999984 57777777777777667889888888877433 467888888888888778888988877654
Q ss_pred eeEeee----------cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee--EEeec-------CCCCEEEEE
Q 019847 91 KLVRNL----------EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT--SCIKA-------HSGEVCGLK 151 (335)
Q Consensus 91 ~~~~~~----------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~-------~~~~i~~~~ 151 (335)
..+..+ ...+...-.++|.| ....|+.+-+-.-+.+|......... ..... .-..+.++.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 322211 11256788999999 77777777777777777765333111 11111 123467788
Q ss_pred eec-CCCEEEEEeCCCeEEEEEccC
Q 019847 152 WSN-EGNLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 152 ~~~-~~~~l~~~~~dg~i~iwd~~~ 175 (335)
|++ .+.+|+-+.+++.+.-.|...
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCC
Confidence 887 567777788888888888664
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.22 Score=42.34 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=38.6
Q ss_pred CCceEEEEcC-----------CCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecC
Q 019847 59 DYPTSVSWSH-----------DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNH 110 (335)
Q Consensus 59 ~~v~~~~~~~-----------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 110 (335)
..|+++.+-| |...+++|..+|.|++|.. +|.++..-.-|..+|..+....
T Consensus 57 e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 57 ECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred CEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 5677776643 3568899999999999984 6777666666888888888743
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.15 Score=40.16 Aligned_cols=186 Identities=12% Similarity=0.147 Sum_probs=104.4
Q ss_pred cccceeeee-cCCceEEEe-c--CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 16 DYYSKVIDW-GRNNVLAVA-L--GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 16 ~~~~~~~~~-~~~~~~~~~-~--~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
..+...+.+ +++.++-++ . ...|+.+|+.+++......++.. ----.++.. +++.....-.++...+||.++.+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEE-TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEE-CCEEEEEEecCCeEEEEccccce
Confidence 345666777 555555544 2 34899999999998877777542 112334443 23333444478899999999999
Q ss_pred eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee-cCC---CCEEEEEeecCCCEEEEEeCCCe
Q 019847 92 LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK-AHS---GEVCGLKWSNEGNLLASGGDDNV 167 (335)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~---~~i~~~~~~~~~~~l~~~~~dg~ 167 (335)
.+.++.- ...=+.++. ++..|+.......++++|..+-+......- ... ..++.+.|. +|...|=.-....
T Consensus 122 ~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp EEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSE
T ss_pred EEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCe
Confidence 9888863 355566664 677788777788999999876544222111 111 234555554 4444444434444
Q ss_pred EEEEEccCCCcccce------eec------cCCCCCeeEEEecCCCCcEEEEe
Q 019847 168 VRIWERSKMSSSKSL------HRF------TDHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 168 i~iwd~~~~~~~~~~------~~~------~~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
|..-|..++.....+ ... .....-.+.+++.|..+.++++|
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 555554433211110 000 01134578999999999999987
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.33 Score=43.61 Aligned_cols=199 Identities=7% Similarity=0.028 Sum_probs=102.5
Q ss_pred CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee--EEeecCCCCEEEEEeecCCC
Q 019847 80 SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT--SCIKAHSGEVCGLKWSNEGN 157 (335)
Q Consensus 80 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~~~i~~~~~~~~~~ 157 (335)
-.|+||+. +|+++..+.-....+..+.|+ +...|++-..+|++++|++-...... .-.......|..+.+..+|-
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 45888886 466666655555588899998 56677888999999999986322111 00122334466666665654
Q ss_pred EEEEEeCCCeEEEE-EccCCCcccceeeccCCCCCeeEEEecCCCC--cE-EEEecCCCCC-eEEEEECCCCceEEEeec
Q 019847 158 LLASGGDDNVVRIW-ERSKMSSSKSLHRFTDHCGGVKALAWSPHQV--NV-LATGGGREDG-CIKIWNVQKGTCIHGIDA 232 (335)
Q Consensus 158 ~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~-~~~~~g~~d~-~i~i~d~~~~~~~~~~~~ 232 (335)
.+.+ .+|.+.+- +...+. ...+........+-.|....+++. .+ +...- ..+ .+..-+....+...-...
T Consensus 141 avlt--~~g~v~~i~~~~~~~-~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~--~v~~~~~q~~~~~~q~~~~~~~ 215 (829)
T KOG2280|consen 141 AVLT--VSGQVILINGVEEPK-LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV--AVGLHICQVEESRVQLHALSWP 215 (829)
T ss_pred EEEe--cCCcEEEEcCCCcch-hhhCCCCCCccCCCcceeEecCCCcceeEEeech--hhhhcccceecccccccccCCC
Confidence 3333 34544443 322211 111111111111222332222221 11 11100 000 011111111122211223
Q ss_pred CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc--CCCCceeEeEEcCCC
Q 019847 233 KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ--SSNSRILDLSQSPDG 293 (335)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~ 293 (335)
+..+..+..||+.++++.- .+.|.|.+-+.+..+....+. .|.. ...++|.-+.
T Consensus 216 ~~~~~ki~VS~n~~~laLy------t~~G~i~~vs~D~~~~lce~~~~~~~~-p~qm~Wcgnd 271 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALY------TETGKIWVVSIDLSQILCEFNCTDHDP-PKQMAWCGND 271 (829)
T ss_pred CceEEEEEEcCCcceEEEE------ecCCcEEEEecchhhhhhccCCCCCCc-hHhceeecCC
Confidence 4678889999999998866 668999998888777766655 2222 2355555443
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.19 Score=39.84 Aligned_cols=198 Identities=13% Similarity=0.082 Sum_probs=122.4
Q ss_pred cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC-CCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCC
Q 019847 99 HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH-SGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMS 177 (335)
Q Consensus 99 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 177 (335)
...-+..+.+ .+++...+..+.-+++.|+.+...+...-.-. .+--.++ .-.|++..++..|.-+.+.|+.++.
T Consensus 85 ~~~l~~Dv~v---se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv--~vsGn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 85 ARDLFADVRV---SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGV--YVSGNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhhheeEe---cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEE--EecCCEEEEeeccCcEEEEECCCCC
Confidence 4456777778 56778888888899999998776544332211 2333343 3457888888877778899999887
Q ss_pred cccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc---eEEEeecCCcEeEEEeCCCCceeeeeeee
Q 019847 178 SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT---CIHGIDAKAQICGLEWNRHHKEILSGHGF 254 (335)
Q Consensus 178 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (335)
..............-..++.+-+ +-..+. .|+-+.+-|+.+.. .+........+.++..+++..+++..
T Consensus 160 sP~lagrya~~~~d~~~v~ISGn--~AYvA~---~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--- 231 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAISGN--YAYVAW---RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--- 231 (370)
T ss_pred CceeeeeeccCCCCceeEEEecC--eEEEEE---eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc---
Confidence 76666555554444456666644 344444 68899999987643 34444455578888888888877765
Q ss_pred eeecCCCeEEEEECCCCceeeccc--CCCC--ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 019847 255 SASGDGNKLCLWKYPNMTKVGELQ--SSNS--RILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 255 ~~~~~~~~i~i~d~~~~~~~~~~~--~~~~--~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
+..+.+-|..+.+....+. .... .++.+.. .+++...+..+.-+.+-|++++...
T Consensus 232 -----~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp~sp 290 (370)
T COG5276 232 -----DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNPPSP 290 (370)
T ss_pred -----ccceEEEecCCCCCceEeeccccCCcccccceec--ccceeeeeccccCceeEeccCCCCC
Confidence 5566666766555332221 1111 1222233 3345555555556666666665443
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.11 Score=47.72 Aligned_cols=28 Identities=11% Similarity=-0.044 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeC
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDA 87 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 87 (335)
-.|..+.++|+|.++|..+..| |.|-.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 4578889999999999888765 555544
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.23 Score=39.68 Aligned_cols=227 Identities=11% Similarity=0.135 Sum_probs=126.0
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEeCC------Cc-eeEeeecc-----cccceeEeeecCCC-----------CCEE
Q 019847 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAE------TS-KLVRNLEG-----HHRRVATSSWNHWN-----------GHIL 116 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~-----------~~~l 116 (335)
....++++|.+.+-++....+...+||.. .. .++-.+.. .....+.+.|+... ...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35789999999888888888999999986 12 22333331 23467777776421 1236
Q ss_pred EEeeCCCcEEEEecccCCe----eeEEee-cCCCCE-EEEEeec--CCCEEEEE-eCCCeEEEEEccCCCcccceeeccC
Q 019847 117 TSGSKDKSIINHDVRVSNN----VTSCIK-AHSGEV-CGLKWSN--EGNLLASG-GDDNVVRIWERSKMSSSKSLHRFTD 187 (335)
Q Consensus 117 ~~~~~dg~i~~~d~~~~~~----~~~~~~-~~~~~i-~~~~~~~--~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~ 187 (335)
+.+++||+|.-|....... ....+. ...+.| ..+++.. .+.+|..+ -..++|.+||-.-. ++..-..
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~----~~~~~g~ 179 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR----PPPLPGS 179 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc----cccCCCC
Confidence 7789999999999643222 111121 122333 3455543 34555544 45789999984321 1110000
Q ss_pred CCCCeeEEEecCC-----CCcEEEEec-----------CCCCCeEEEEECCCCceEEEeecCC---cEeEEEeCCCCcee
Q 019847 188 HCGGVKALAWSPH-----QVNVLATGG-----------GREDGCIKIWNVQKGTCIHGIDAKA---QICGLEWNRHHKEI 248 (335)
Q Consensus 188 ~~~~v~~~~~~~~-----~~~~~~~~~-----------g~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 248 (335)
..++-.-.-|.|- +..++++.. |.--|.|-+||+. |+.++++.... ....++..|..---
T Consensus 180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred ccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCC
Confidence 0111000011111 122333321 1234789999965 88888886654 34556665543222
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceeecccCCCC------ceeEeEEcC
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNS------RILDLSQSP 291 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~------~i~~~~~~~ 291 (335)
+++..+...-.||+|..||..+++.+..+....+ .+..|+|-.
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 2222222224599999999999998877765443 356677754
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.35 Score=41.32 Aligned_cols=273 Identities=10% Similarity=0.067 Sum_probs=149.4
Q ss_pred CceEEEecCCeEEEEEecCCcee--eEEeecCCCCCceEEEEcC-----CCCEEEEEECCCcEEEEeCCC--ce------
Q 019847 27 NNVLAVALGPVLFLWKWENGKVK--KLLQVPGEDDYPTSVSWSH-----DAKTLAVGYMDSKLQLWDAET--SK------ 91 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iw~~~~--~~------ 91 (335)
+.+++++..|.++||+...+... ..+--..-+.+|..++.-+ +...||+ -.-..+.||.+.. +.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCcE
Confidence 46888999999999998654422 1211123457788887543 2234454 4456788888731 11
Q ss_pred -eEeeeccccc--ceeEee---ecCCC-CCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC
Q 019847 92 -LVRNLEGHHR--RVATSS---WNHWN-GHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD 164 (335)
Q Consensus 92 -~~~~~~~~~~--~v~~~~---~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (335)
.+..+..|.- ....++ |-... .+.+.+-+.||.+.+|+-+.-. ....+.. ---...+.|.+.-..|++++.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-FSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE-EEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 1222223322 222232 32212 5788899999999999965321 1222222 222344778888889999999
Q ss_pred CCeEEEEEccCCCcc-----------------cce---eeccCCCCCee---EEEecCCCCcEEEEecCCCCCeEEEEEC
Q 019847 165 DNVVRIWERSKMSSS-----------------KSL---HRFTDHCGGVK---ALAWSPHQVNVLATGGGREDGCIKIWNV 221 (335)
Q Consensus 165 dg~i~iwd~~~~~~~-----------------~~~---~~~~~~~~~v~---~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 221 (335)
+..+.-|........ +.+ -++. -..++. .+.++.....+++.| ...+.+.+.
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg----er~Lf~l~~ 269 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG----ERSLFCLKD 269 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe----cceEEEEcC
Confidence 989998875321110 000 0000 112222 333433444566665 677888875
Q ss_pred CCCceEEEeecCCcEeEEEe-------CCCCc-eeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeE---Ec
Q 019847 222 QKGTCIHGIDAKAQICGLEW-------NRHHK-EILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLS---QS 290 (335)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~---~~ 290 (335)
+|......+.+....++.. .|... .++. ++.++.+.||.-.+ ++...+....+| ++. |.
T Consensus 270 -~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV------~t~t~~LlVy~d~~--L~WsA~l~~~PV-al~v~~~~ 339 (418)
T PF14727_consen 270 -NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLV------GTHTGTLLVYEDTT--LVWSAQLPHVPV-ALSVANFN 339 (418)
T ss_pred -CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEE------EecCCeEEEEeCCe--EEEecCCCCCCE-EEEecccC
Confidence 5666555555544333321 11211 2333 37799999997443 222222222332 333 33
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 291 PDGLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 291 ~~~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
.-...|++-+.+|.+.+-=+.+.+...
T Consensus 340 ~~~G~IV~Ls~~G~L~v~YLGTdPs~~ 366 (418)
T PF14727_consen 340 GLKGLIVSLSDEGQLSVSYLGTDPSLF 366 (418)
T ss_pred CCCceEEEEcCCCcEEEEEeCCCCccc
Confidence 334578888999999998777655433
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.064 Score=45.72 Aligned_cols=144 Identities=18% Similarity=0.223 Sum_probs=92.3
Q ss_pred CCCEEE-EEECCCcEEEEeCCCceeEeeecccccceeEeeecCCC------CCEEEEeeCCCcEEEEecccCCeeeEEee
Q 019847 69 DAKTLA-VGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWN------GHILTSGSKDKSIINHDVRVSNNVTSCIK 141 (335)
Q Consensus 69 ~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 141 (335)
+..+|. .|.....++--|++.|+.+.++..|... -+.|.|.. ...-+.|-.+..|.-.|.+.....+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~- 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV- 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee-
Confidence 444444 3455667888899999999999877655 56676621 2233455666777777776544222211
Q ss_pred cCCCCEEEEEee----cCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEE
Q 019847 142 AHSGEVCGLKWS----NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIK 217 (335)
Q Consensus 142 ~~~~~i~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (335)
......+.-.|+ ....++|+++..|.|++||--.. .....+.+....|..+..+.+|++++++| ...+.
T Consensus 555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~---rAKtalP~lG~aIk~idvta~Gk~ilaTC----k~yll 627 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGK---RAKTALPGLGDAIKHIDVTANGKHILATC----KNYLL 627 (776)
T ss_pred eehhccccccccccccccCceEEEecCCCceeeehhhcc---hhhhcCcccccceeeeEeecCCcEEEEee----cceEE
Confidence 122222222222 24569999999999999994321 22233445567789999999999999997 57888
Q ss_pred EEECC
Q 019847 218 IWNVQ 222 (335)
Q Consensus 218 i~d~~ 222 (335)
+-|++
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 88875
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.59 Score=43.22 Aligned_cols=241 Identities=8% Similarity=0.007 Sum_probs=115.3
Q ss_pred CceEEEEcCCCCEEEEEEC-----CCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeC-C-----CcEEEE
Q 019847 60 YPTSVSWSHDAKTLAVGYM-----DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK-D-----KSIINH 128 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-----g~i~~~ 128 (335)
.+..+.++|++++|+.+.. ...|++.|+.+++.+...-.... ..++|.+ +++.|+.... + ..|+.+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEee-CCCEEEEEEecCCCCCCCEEEEE
Confidence 3667889999999987643 23688999988864322211111 4589998 6655544432 2 367778
Q ss_pred ecccCCe-eeEEeecCCCCEE-EEEeecCCCEEEEEeC---CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCc
Q 019847 129 DVRVSNN-VTSCIKAHSGEVC-GLKWSNEGNLLASGGD---DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203 (335)
Q Consensus 129 d~~~~~~-~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 203 (335)
++.++.. ....+........ ....+.++++++..+. ++.+.+++...... ..........+....+. +..+..
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA-EPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC-CceEEEECCCCCEEEEE-eCCCEE
Confidence 8876632 2223333333333 2333447777665543 34688888543221 11111111122222222 333333
Q ss_pred EEEEecCCCCCeEEEEECCC-CceEEEeec--CCcEeEEEeCCCCceeeeeeeeeeecCCCe--EEEEECCCCceeeccc
Q 019847 204 VLATGGGREDGCIKIWNVQK-GTCIHGIDA--KAQICGLEWNRHHKEILSGHGFSASGDGNK--LCLWKYPNMTKVGELQ 278 (335)
Q Consensus 204 ~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~i~d~~~~~~~~~~~ 278 (335)
++.+..+.....|...++.+ ++....+.. ...+..+.+. +..++... ..++. +.+++...+ .+..+.
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~-----~~~g~~~l~~~~~~~~-~~~~l~ 354 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEE-----RQRGLTSLRQINRKTR-EVIGIA 354 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEE-----EeCCEEEEEEEcCCCC-ceEEec
Confidence 33332222333455555552 222223333 2357777776 33333321 33444 444554333 233332
Q ss_pred -CCCCceeEeEEc--CCC-CEEEEEe---CCCcEEEEecCCC
Q 019847 279 -SSNSRILDLSQS--PDG-LTVATAG---ADETIRFWEAFGP 313 (335)
Q Consensus 279 -~~~~~i~~~~~~--~~~-~~l~~~~---~dg~v~iw~~~~~ 313 (335)
.....+..+.++ +++ .++++.+ .-+.+..+|+.++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 355 FDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 222223333344 333 3444443 2356777777654
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.17 Score=45.24 Aligned_cols=116 Identities=12% Similarity=0.135 Sum_probs=73.3
Q ss_pred cceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEee--cCCCEEEEEeCCCeEEEEEcc----
Q 019847 101 RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWS--NEGNLLASGGDDNVVRIWERS---- 174 (335)
Q Consensus 101 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~iwd~~---- 174 (335)
....-+.-+. -++..++-+....+.|||.+.+...........+.|.++.|. |+++.+++.+....|.+|.-.
T Consensus 30 ~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 30 SNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3444444444 444445545556899999986653333333457899999995 488989888999999998532
Q ss_pred --CCCcccceeec--cCC-CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC
Q 019847 175 --KMSSSKSLHRF--TDH-CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ 222 (335)
Q Consensus 175 --~~~~~~~~~~~--~~~-~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 222 (335)
.......+..+ ..+ ..+|.+..|.++|. +++. .++.+.++|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~----sGNqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVG----SGNQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEE----eCCEEEEECCC
Confidence 11112222222 223 36799999999994 3333 25789998753
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.18 Score=44.03 Aligned_cols=114 Identities=16% Similarity=0.232 Sum_probs=73.9
Q ss_pred CCceEEEEcCC----CCEEEEEECCCcEEEEeCC-----CceeEeeeccc---cc--ceeEeeecCCCCCEEEEeeCCCc
Q 019847 59 DYPTSVSWSHD----AKTLAVGYMDSKLQLWDAE-----TSKLVRNLEGH---HR--RVATSSWNHWNGHILTSGSKDKS 124 (335)
Q Consensus 59 ~~v~~~~~~~~----~~~l~~~~~dg~i~iw~~~-----~~~~~~~~~~~---~~--~v~~~~~~~~~~~~l~~~~~dg~ 124 (335)
..|..+.|.|- ...|++......|.||.+. +.+.+..-..+ .- -...+.|+| ...+|+.-.....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dv 135 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDV 135 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCce
Confidence 45899999994 3345555567789999875 22322221111 11 234578999 8888877776666
Q ss_pred EEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC-CeEEEEEc
Q 019847 125 IINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD-NVVRIWER 173 (335)
Q Consensus 125 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iwd~ 173 (335)
-.+++++......+.--...+.|.|.+|.+||+.|+++-.. =.-++||-
T Consensus 136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 56777765554444434567889999999999988776433 34578883
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.27 Score=39.06 Aligned_cols=156 Identities=13% Similarity=0.041 Sum_probs=96.9
Q ss_pred eeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce---eEeeec
Q 019847 21 VIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK---LVRNLE 97 (335)
Q Consensus 21 ~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~ 97 (335)
-+.++++..+.+-.+..++|.|+.+...-....+-.-...-++ +.-.|++..++..|.-+.+.|+.+.. +.....
T Consensus 91 Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~lagrya 168 (370)
T COG5276 91 DVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYA 168 (370)
T ss_pred eeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCceeeeeec
Confidence 3556777777888888999999987654222222111122233 44478888888866668888887543 333444
Q ss_pred ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEe-ecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCC
Q 019847 98 GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI-KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 98 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 176 (335)
........++. .+++-..+..|+-+.+-|+.....+...- ......+.++..+++..+++.. +--+.+-|...+
T Consensus 169 ~~~~d~~~v~I---SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ 243 (370)
T COG5276 169 LPGGDTHDVAI---SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGP 243 (370)
T ss_pred cCCCCceeEEE---ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEEecCCC
Confidence 33344455665 57788888899999999998665433221 2233467888877775555554 334777787765
Q ss_pred Cccccee
Q 019847 177 SSSKSLH 183 (335)
Q Consensus 177 ~~~~~~~ 183 (335)
.....+-
T Consensus 244 ssp~~~g 250 (370)
T COG5276 244 SSPTVFG 250 (370)
T ss_pred CCceEee
Confidence 5433333
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.44 Score=42.76 Aligned_cols=114 Identities=16% Similarity=0.267 Sum_probs=74.0
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec-ccccceeEeeecC-CCCCEEEEeeCCCcEEEEecc----
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE-GHHRRVATSSWNH-WNGHILTSGSKDKSIINHDVR---- 131 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~~d~~---- 131 (335)
-..+.-+.-+.-++..++-+....+.|||...+....+-. ...+.|.++.|.. .+++.+++.+....|.+|--.
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3445556666656555555555689999998887544322 3578899999953 277888888888999888542
Q ss_pred -cCC----eeeE-EeecCC-CCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 132 -VSN----NVTS-CIKAHS-GEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 132 -~~~----~~~~-~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
... .+.. .+..+. .+|.+..|.++|.+++.+ +..+.|+|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 111 1111 122333 678999999998765544 457888873
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.34 Score=38.24 Aligned_cols=180 Identities=12% Similarity=0.107 Sum_probs=107.4
Q ss_pred eeEeeecCCCCCEEEEeeCCC--cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCccc
Q 019847 103 VATSSWNHWNGHILTSGSKDK--SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSK 180 (335)
Q Consensus 103 v~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 180 (335)
...+.|.. ++.++-+.+.-| .|+.+|+.+++..........----.++... ++.....-.++...+||.++. +
T Consensus 47 TQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl---~ 121 (264)
T PF05096_consen 47 TQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTL---K 121 (264)
T ss_dssp EEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTT---E
T ss_pred CccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccc---e
Confidence 45566755 788888888777 7999999987754443322222233444443 345555567899999997764 3
Q ss_pred ceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC------CcEeEEEeCCCCceeeeeeee
Q 019847 181 SLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK------AQICGLEWNRHHKEILSGHGF 254 (335)
Q Consensus 181 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 254 (335)
.+.++. ..+.=..++ .+++.++.+.+ ...++++|..+.+....+... ..++.+.|- +|...+-.
T Consensus 122 ~~~~~~-y~~EGWGLt--~dg~~Li~SDG---S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANV--- 191 (264)
T PF05096_consen 122 KIGTFP-YPGEGWGLT--SDGKRLIMSDG---SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANV--- 191 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-S---SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEE---
T ss_pred EEEEEe-cCCcceEEE--cCCCEEEEECC---ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEe---
Confidence 444443 234556666 45667888764 678999999888877766532 235566665 44443332
Q ss_pred eeecCCCeEEEEECCCCceeeccc------------CC---CCceeEeEEcCCCCEEEEEe
Q 019847 255 SASGDGNKLCLWKYPNMTKVGELQ------------SS---NSRILDLSQSPDGLTVATAG 300 (335)
Q Consensus 255 ~~~~~~~~i~i~d~~~~~~~~~~~------------~~---~~~i~~~~~~~~~~~l~~~~ 300 (335)
-....|...|..+|+.+..+. .+ ..-.+.||+.|....|...|
T Consensus 192 ---W~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 192 ---WQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ---TTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred ---CCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 346788888999888766441 01 24578999988765554444
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.11 Score=43.72 Aligned_cols=138 Identities=12% Similarity=0.068 Sum_probs=89.5
Q ss_pred eeecC-CceEEEecCCeEEEEEecCCc--eeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeE----e
Q 019847 22 IDWGR-NNVLAVALGPVLFLWKWENGK--VKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV----R 94 (335)
Q Consensus 22 ~~~~~-~~~~~~~~~~~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----~ 94 (335)
+-|++ ++.+.+...|.+.=|-..... ....+.. ...++|.++.|++|.+.||+--.+.+|.+++....+.. .
T Consensus 28 vFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm-~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 28 VFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDM-DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred eeeccCcceEEEEecCCeeEEEEeCCCCCCCceeee-cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence 33444 555555556666667655332 2222332 24569999999999999999999999999998543322 2
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEe
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGG 163 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 163 (335)
+.+.....|....|+. + .-++.-...| +-+|.........+..+.|...|.-..|.++.+.++.++
T Consensus 107 ~ck~k~~~IlGF~W~~-s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 107 ECKTKNANILGFCWTS-S-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HhccCcceeEEEEEec-C-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 2334456688999986 3 4555544443 556665545544566677888899999999877555444
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.92 Score=42.25 Aligned_cols=204 Identities=11% Similarity=0.080 Sum_probs=112.6
Q ss_pred CCCEEEEEECCCcEEEEeCCCceeEeeecccccc--------eeEeeecC---------------CCCCEEEEeeCCCcE
Q 019847 69 DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRR--------VATSSWNH---------------WNGHILTSGSKDKSI 125 (335)
Q Consensus 69 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--------v~~~~~~~---------------~~~~~l~~~~~dg~i 125 (335)
.+..|..++.++.|.-.|..+|+.+.++...... ...+.+.. ..+..++.++.|+.+
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 3567888888899999999999988877543211 12233321 133478888999999
Q ss_pred EEEecccCCeeeEEeecCCCCE-------------EEEEeec--CCCEEEEEeC----------CCeEEEEEccCCCccc
Q 019847 126 INHDVRVSNNVTSCIKAHSGEV-------------CGLKWSN--EGNLLASGGD----------DNVVRIWERSKMSSSK 180 (335)
Q Consensus 126 ~~~d~~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~l~~~~~----------dg~i~iwd~~~~~~~~ 180 (335)
.-.|.++++.+... +..+.+ ..+.-.| .+..+++|+. +|.|+-+|.++++..-
T Consensus 273 iALDA~TGk~~W~f--g~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 273 IALDADTGKLCEDF--GNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEEECCCCCEEEEe--cCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 99999888765432 111111 1111122 2345666643 6889999988764321
Q ss_pred ceeeccC--------------CCCCe-eEEEecCCCCcEEEEec---------------CCCCCeEEEEECCCCceEEEe
Q 019847 181 SLHRFTD--------------HCGGV-KALAWSPHQVNVLATGG---------------GREDGCIKIWNVQKGTCIHGI 230 (335)
Q Consensus 181 ~~~~~~~--------------~~~~v-~~~~~~~~~~~~~~~~~---------------g~~d~~i~i~d~~~~~~~~~~ 230 (335)
....... ....+ ..++++|....++.-.+ ....+.|.-.|.++|+..-.+
T Consensus 351 ~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 351 AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF 430 (764)
T ss_pred EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence 1111000 00011 23344444332222110 012456778899999988777
Q ss_pred ec-CCcEe---------EEEeCC-CCceeeeeeeeeeecCCCeEEEEECCCCceeecc
Q 019847 231 DA-KAQIC---------GLEWNR-HHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL 277 (335)
Q Consensus 231 ~~-~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 277 (335)
+. +..+. -+.+.. +|+..- .+..++.+|.+.++|.++++++...
T Consensus 431 Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~---~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 431 QTVHHDLWDMDVPAQPSLVDLPDADGTTVP---ALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cccCCccccccccCCceEEeeecCCCcEee---EEEEECCCCEEEEEECCCCCEEeec
Confidence 54 22211 122222 442110 1233488999999999999887653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.41 Score=38.12 Aligned_cols=144 Identities=15% Similarity=0.238 Sum_probs=86.5
Q ss_pred ceeEeeecCCCCCEEEEee---CCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE-ccCCC
Q 019847 102 RVATSSWNHWNGHILTSGS---KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE-RSKMS 177 (335)
Q Consensus 102 ~v~~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~ 177 (335)
.+.+.+.++ ++..++... ....+.++.. +....... ....+..-.|++++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688899999 777666554 3334555544 33323322 233778889999987777766666666663 22221
Q ss_pred cccceee-ccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC---CC--ce----EEEe-ecCCcEeEEEeCCCCc
Q 019847 178 SSKSLHR-FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ---KG--TC----IHGI-DAKAQICGLEWNRHHK 246 (335)
Q Consensus 178 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~---~~--~~----~~~~-~~~~~~~~~~~~~~~~ 246 (335)
...... .......|..+.++|||.++++......++.|.+--+. .+ .. +... .....+..+.|.+++.
T Consensus 100 -~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 100 -GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred -ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 112211 11111289999999999998888632235777776543 22 11 1111 1235788999999998
Q ss_pred eeeee
Q 019847 247 EILSG 251 (335)
Q Consensus 247 ~~~~~ 251 (335)
.++.+
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 87765
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.42 Score=42.88 Aligned_cols=133 Identities=14% Similarity=0.170 Sum_probs=66.5
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC------CcEEEEeCCCceeEee--ecccccceeEeee
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD------SKLQLWDAETSKLVRN--LEGHHRRVATSSW 108 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~ 108 (335)
.+..||..+++......++...... +++ .-+++..+.|+.+ ..+..||..+.+.... +....... ++..
T Consensus 359 ~v~~yd~~~~~W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~ 435 (534)
T PHA03098 359 TVESWKPGESKWREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY 435 (534)
T ss_pred eEEEEcCCCCceeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE
Confidence 5788888887765443333222111 222 2366677777632 4588899877654322 11111111 2222
Q ss_pred cCCCCCEEEEeeCCC--------cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC-----CeEEEEEccC
Q 019847 109 NHWNGHILTSGSKDK--------SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD-----NVVRIWERSK 175 (335)
Q Consensus 109 ~~~~~~~l~~~~~dg--------~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 175 (335)
. ++.+++.|+.++ .+..||..+..............-.+++ .-+++.++.|+.+ ..+.+||..+
T Consensus 436 -~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 436 -H-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred -E-CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE-EECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 2 667777776532 3788888765432111001111111111 1256677777654 3677787664
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.15 Score=39.01 Aligned_cols=102 Identities=13% Similarity=0.206 Sum_probs=68.9
Q ss_pred ceeeeecCC--c-eEEEecCCeEEEEE--ecCCcee---eEEeecC----CCCCceEEEEcCCCCEEEEEECCCcEEEEe
Q 019847 19 SKVIDWGRN--N-VLAVALGPVLFLWK--WENGKVK---KLLQVPG----EDDYPTSVSWSHDAKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 19 ~~~~~~~~~--~-~~~~~~~~~i~vw~--~~~~~~~---~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 86 (335)
.+.++|+.+ . ++.=+.+-+|.-|| ..+|... .++.+.. ..-..-.++...+|++.++.-..|+|.-.|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 456888864 2 33334566787787 5666542 2233321 112234556667888888888889999999
Q ss_pred CCCceeEeeecccccceeEeeecCCCCCEEEEee
Q 019847 87 AETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS 120 (335)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 120 (335)
..+|+.+.+++-....+++++|--.+-+++++..
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 9999999999988999999999653445555443
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.61 Score=39.80 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=57.3
Q ss_pred EEEEcCCCCEEEEEECCCcEEE---EeCC-Cc----eeEee----eccc-ccceeEeeecCC----------CCCEEEEe
Q 019847 63 SVSWSHDAKTLAVGYMDSKLQL---WDAE-TS----KLVRN----LEGH-HRRVATSSWNHW----------NGHILTSG 119 (335)
Q Consensus 63 ~~~~~~~~~~l~~~~~dg~i~i---w~~~-~~----~~~~~----~~~~-~~~v~~~~~~~~----------~~~~l~~~ 119 (335)
.++.+|+++.||.+..+..+.+ |+.. .+ ..... +... ...|+++.+.|- +...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5678899999999977765554 5331 11 11111 1111 157787777542 46789999
Q ss_pred eCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec
Q 019847 120 SKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN 154 (335)
Q Consensus 120 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~ 154 (335)
..+|.|++|... +.. +....-|..+|..+.+..
T Consensus 86 ~ssG~vrfyte~-G~L-L~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTEN-GVL-LLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEecc-chH-HHHHhcCccceEEEEecc
Confidence 999999999974 433 222334788888887743
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.59 Score=39.62 Aligned_cols=142 Identities=11% Similarity=0.100 Sum_probs=75.2
Q ss_pred CCceEEEEcCCCCEEEEEE-----------CCC-cEEEEeCCC--ce--eEeeecccccceeEeeecCCCCCEEEEeeCC
Q 019847 59 DYPTSVSWSHDAKTLAVGY-----------MDS-KLQLWDAET--SK--LVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~-----------~dg-~i~iw~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 122 (335)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+...-.....+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 4467899999998776642 223 677776432 22 2233433344567888887 66 444 4444
Q ss_pred CcEEEEecccC-----C--eeeEEeec----CCCCEEEEEeecCCCEEEEEeCC-------------------CeEEEEE
Q 019847 123 KSIINHDVRVS-----N--NVTSCIKA----HSGEVCGLKWSNEGNLLASGGDD-------------------NVVRIWE 172 (335)
Q Consensus 123 g~i~~~d~~~~-----~--~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d-------------------g~i~iwd 172 (335)
...++.|.... + .+...+.. +......++|.|||.+.++-+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 33334354321 1 11121211 13447789999999876654421 3344444
Q ss_pred ccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEe
Q 019847 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
..... +..+...-.....++|+|++. ++++-
T Consensus 171 pdg~~----~e~~a~G~rnp~Gl~~d~~G~-l~~td 201 (367)
T TIGR02604 171 PDGGK----LRVVAHGFQNPYGHSVDSWGD-VFFCD 201 (367)
T ss_pred cCCCe----EEEEecCcCCCccceECCCCC-EEEEc
Confidence 33211 222222223356899999885 55543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.74 Score=40.65 Aligned_cols=173 Identities=13% Similarity=0.049 Sum_probs=83.6
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC--CcEEEEeCCCceeEe--eecccccceeEeeecCCC
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD--SKLQLWDAETSKLVR--NLEGHHRRVATSSWNHWN 112 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~~ 112 (335)
.+..||..+++......++........+ .-++...+.|+.+ ..+..||..+++... .+.........+.. +
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~---~ 362 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI---N 362 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE---C
Confidence 5778888877665544443222222222 2367777777753 357888876654322 22211111222222 7
Q ss_pred CCEEEEeeCCC---cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCC
Q 019847 113 GHILTSGSKDK---SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHC 189 (335)
Q Consensus 113 ~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 189 (335)
+.+.+.|+.++ .+..||.++..............-.++ ..-++++.+.|+ .+.+||.++. .+..+..+....
T Consensus 363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~-~~~~~~IYv~GG---~~e~ydp~~~-~W~~~~~m~~~r 437 (480)
T PHA02790 363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCA-LVFGRRLFLVGR---NAEFYCESSN-TWTLIDDPIYPR 437 (480)
T ss_pred CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceE-EEECCEEEEECC---ceEEecCCCC-cEeEcCCCCCCc
Confidence 78888888654 467788765443211100111111112 223566666663 5678887643 333333332222
Q ss_pred CCeeEEEecCCCCcEEEEecCCCC-----CeEEEEECCCC
Q 019847 190 GGVKALAWSPHQVNVLATGGGRED-----GCIKIWNVQKG 224 (335)
Q Consensus 190 ~~v~~~~~~~~~~~~~~~~~g~~d-----~~i~i~d~~~~ 224 (335)
.... ++.. ++ .+++.|+ .+ ..+..||.+++
T Consensus 438 ~~~~-~~v~-~~-~IYviGG--~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 438 DNPE-LIIV-DN-KLLLIGG--FYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cccE-EEEE-CC-EEEEECC--cCCCcccceEEEEECCCC
Confidence 2222 2222 23 5777764 22 34556665544
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.35 Score=36.67 Aligned_cols=107 Identities=18% Similarity=0.200 Sum_probs=66.6
Q ss_pred CEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC------eEEEE---EccC-CCccc---
Q 019847 114 HILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN------VVRIW---ERSK-MSSSK--- 180 (335)
Q Consensus 114 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~iw---d~~~-~~~~~--- 180 (335)
+.|+.+...+.|.+|++.............-+.|..+.++..|+++++--.+. .+|+| .... .....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 55555567788999999844443333334558899999999999999964332 55665 2110 00000
Q ss_pred ----------------ceeec-cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC
Q 019847 181 ----------------SLHRF-TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224 (335)
Q Consensus 181 ----------------~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 224 (335)
.+... .+-+.++.+++..|....+++.+ ++.+.+|.+...
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~----~~~l~lf~l~~~ 165 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC----GNKLVLFTLKYQ 165 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc----CCEEEEEEEEEE
Confidence 01000 01244677888888777777764 789999987643
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.24 E-value=1 Score=41.97 Aligned_cols=113 Identities=18% Similarity=0.163 Sum_probs=70.7
Q ss_pred CCceEEEecCCeEEEEEecCCceeeEEeecCCCC------CceEEEEc----------------CCCCEEEEEECCCcEE
Q 019847 26 RNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDD------YPTSVSWS----------------HDAKTLAVGYMDSKLQ 83 (335)
Q Consensus 26 ~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~------~v~~~~~~----------------~~~~~l~~~~~dg~i~ 83 (335)
++.+++++.++.|.-.|..+|+.+-.+....... ....+++. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 4677777888999999999998765554432111 11223332 1345788899999999
Q ss_pred EEeCCCceeEeeeccccccee-------------EeeecCC-CCCEEEEeeC----------CCcEEEEecccCCeeeEE
Q 019847 84 LWDAETSKLVRNLEGHHRRVA-------------TSSWNHW-NGHILTSGSK----------DKSIINHDVRVSNNVTSC 139 (335)
Q Consensus 84 iw~~~~~~~~~~~~~~~~~v~-------------~~~~~~~-~~~~l~~~~~----------dg~i~~~d~~~~~~~~~~ 139 (335)
-.|.++|+....+.. .+.+. .+.-.|. .+..++.|+. +|.|+-+|.++++..-+.
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999877642 11110 0000110 2345666643 688999999988765443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.54 Score=42.72 Aligned_cols=108 Identities=8% Similarity=0.104 Sum_probs=68.3
Q ss_pred CCCEEEEeeCCCcEEEEeccc-------C----Ce-e------eEEeecCCCCEEEEEee--cCCCEEEEEeCCCeEEEE
Q 019847 112 NGHILTSGSKDKSIINHDVRV-------S----NN-V------TSCIKAHSGEVCGLKWS--NEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 112 ~~~~l~~~~~dg~i~~~d~~~-------~----~~-~------~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~iw 171 (335)
+...|+.+..||.|.+|..+. . .. . ...........++++++ ...+++|+++....|.+|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 567788888888888886521 0 00 0 00111234578999998 788899999988888888
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCC--C---cEEEEecCCCCCeEEEEEC
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQ--V---NVLATGGGREDGCIKIWNV 221 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~---~~~~~~~g~~d~~i~i~d~ 221 (335)
-............-..+...|.+++|-++. . ..+++++ -.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d--I~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATD--ISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEe--ccCcEEEEEE
Confidence 655422211111112255668899997764 1 2455554 8999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.59 Score=39.63 Aligned_cols=147 Identities=13% Similarity=0.160 Sum_probs=77.5
Q ss_pred cceeEeeecCCCCCEEEEee-----------CCC-cEEEEecccC-Ce--eeEEeecCCCCEEEEEeecCCCEEEEEeCC
Q 019847 101 RRVATSSWNHWNGHILTSGS-----------KDK-SIINHDVRVS-NN--VTSCIKAHSGEVCGLKWSNEGNLLASGGDD 165 (335)
Q Consensus 101 ~~v~~~~~~~~~~~~l~~~~-----------~dg-~i~~~d~~~~-~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 165 (335)
.....++|.+ +++++++-. ..+ .|.+++-..+ .. ....+.........+++.+++ +++ +...
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 4556778877 777766642 223 6666654322 11 123333334456889999888 444 4444
Q ss_pred CeEEEE-EccCCC----cccce-eeccC----CCCCeeEEEecCCCCcEEEEecCC----------------CCCeEEEE
Q 019847 166 NVVRIW-ERSKMS----SSKSL-HRFTD----HCGGVKALAWSPHQVNVLATGGGR----------------EDGCIKIW 219 (335)
Q Consensus 166 g~i~iw-d~~~~~----~~~~~-~~~~~----~~~~v~~~~~~~~~~~~~~~~~g~----------------~d~~i~i~ 219 (335)
.|..+ |..... ..+.+ ..+.. +......+.|.|+|..+++.++.. ..+.|.-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 44434 543211 11112 22222 134477899999996555444200 01445666
Q ss_pred ECCCCceEEEeecCCcEeEEEeCCCCceeeee
Q 019847 220 NVQKGTCIHGIDAKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (335)
|...++....-........++|+++|..+++-
T Consensus 170 ~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 170 NPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred ecCCCeEEEEecCcCCCccceECCCCCEEEEc
Confidence 65544432222233456789999999887653
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.78 Score=40.51 Aligned_cols=183 Identities=10% Similarity=0.021 Sum_probs=83.9
Q ss_pred CCCEEEEeeCCC-----cEEEEecccCCeeeE-EeecCCCCEEEEEeecCCCEEEEEeCC--CeEEEEEccCCCccccee
Q 019847 112 NGHILTSGSKDK-----SIINHDVRVSNNVTS-CIKAHSGEVCGLKWSNEGNLLASGGDD--NVVRIWERSKMSSSKSLH 183 (335)
Q Consensus 112 ~~~~l~~~~~dg-----~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~ 183 (335)
++.+++.|+.++ .+..||..+...... .+....... +++ .-++...+.|+.+ ..+..||.... ....+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n-~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDA-AWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCC-eEEECC
Confidence 566777777543 466788765432111 111111111 122 2367777887754 35777886532 122222
Q ss_pred eccCCCCCeeEEEecCCCCcEEEEecCCCC---CeEEEEECCCCceEEEeecCCcEe-EEEeCCCCceeeeeeeeeeecC
Q 019847 184 RFTDHCGGVKALAWSPHQVNVLATGGGRED---GCIKIWNVQKGTCIHGIDAKAQIC-GLEWNRHHKEILSGHGFSASGD 259 (335)
Q Consensus 184 ~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d---~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 259 (335)
.+.........+.. ++ .+.+.|+ .+ ..+..||.++.+-...-....+.. .....-+++..+.|
T Consensus 348 ~l~~~r~~~~~~~~--~g-~IYviGG--~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G-------- 414 (480)
T PHA02790 348 SLLKPRCNPAVASI--NN-VIYVIGG--HSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG-------- 414 (480)
T ss_pred CCCCCCcccEEEEE--CC-EEEEecC--cCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--------
Confidence 22211111112222 33 5777774 33 356788877654432211111111 11112234444433
Q ss_pred CCeEEEEECCCCce--eecccCCCCceeEeEEcCCCCEEEEEeCC-----CcEEEEecCCC
Q 019847 260 GNKLCLWKYPNMTK--VGELQSSNSRILDLSQSPDGLTVATAGAD-----ETIRFWEAFGP 313 (335)
Q Consensus 260 ~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~~ 313 (335)
|.+.+||..+.+- +..+.........+ .-++++.+.||.+ ..+..||....
T Consensus 415 -G~~e~ydp~~~~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 415 -RNAEFYCESSNTWTLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred -CceEEecCCCCcEeEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 4567788765433 22222212222222 2366777788754 34666766654
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.57 Score=37.61 Aligned_cols=208 Identities=12% Similarity=0.083 Sum_probs=117.4
Q ss_pred cceeEeeecCCCCCEEEEeeCCCcEEEEecc------cCCeeeEEeec-----CCCCEEEEEeecCCC------------
Q 019847 101 RRVATSSWNHWNGHILTSGSKDKSIINHDVR------VSNNVTSCIKA-----HSGEVCGLKWSNEGN------------ 157 (335)
Q Consensus 101 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~------~~~~~~~~~~~-----~~~~i~~~~~~~~~~------------ 157 (335)
..-+.++++| .+.+-++....+...+||.. ....+...+.. .....+.+.|+....
T Consensus 23 ~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 23 RNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 3567899999 78888888888999999986 12222322221 234567777764322
Q ss_pred EEEEEeCCCeEEEEEccCCCcc--cceeecc-CCCCCe-eEEEec--CCCCcEEEEecCCCCCeEEEEECCCCceEEE--
Q 019847 158 LLASGGDDNVVRIWERSKMSSS--KSLHRFT-DHCGGV-KALAWS--PHQVNVLATGGGREDGCIKIWNVQKGTCIHG-- 229 (335)
Q Consensus 158 ~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~-~~~~~v-~~~~~~--~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-- 229 (335)
.++.+++||+|.-|...-.... .....+. ...+.| ..+++. ..+.+|.++-- ..++|.+||-.-.+....
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF--~~g~IDVFd~~f~~~~~~g~ 179 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF--RQGRIDVFKGSFRPPPLPGS 179 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc--CCCceEEecCccccccCCCC
Confidence 3678899999999985322210 1111121 112333 345554 33566777655 789999998543322110
Q ss_pred eecC-----C------------cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc--CCCCceeEeEEc
Q 019847 230 IDAK-----A------------QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ--SSNSRILDLSQS 290 (335)
Q Consensus 230 ~~~~-----~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~ 290 (335)
+..+ . -|+-..-.++.+.-+. +..-|.|-+||. .++.++++. +.-.....|+..
T Consensus 180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~------G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~A 252 (336)
T TIGR03118 180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVA------GAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIA 252 (336)
T ss_pred ccCCCCCCCCCCcceEEECCeEEEEEEecCCccccccc------CCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeC
Confidence 1000 0 0111111222221121 233578999996 566666653 223345667765
Q ss_pred C------CCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 291 P------DGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 291 ~------~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
| .+.+|+-=-.||+|..||..+++....
T Consensus 253 Pa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~ 286 (336)
T TIGR03118 253 PESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQ 286 (336)
T ss_pred hhhhCCCCCCeEEeecCCceeEEecCCCCceeee
Confidence 5 356666555799999999887664433
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.039 Score=29.66 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=27.6
Q ss_pred cceeEeeecCCCC--CEEEEeeCCCcEEEEeccc
Q 019847 101 RRVATSSWNHWNG--HILTSGSKDKSIINHDVRV 132 (335)
Q Consensus 101 ~~v~~~~~~~~~~--~~l~~~~~dg~i~~~d~~~ 132 (335)
+.+.++.|+|..+ ++|+.+-..|.+.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998556 7999999999999999985
|
It contains a characteristic DLL sequence motif. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.79 Score=44.08 Aligned_cols=33 Identities=12% Similarity=0.348 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
.....++|+|....+|.++.+|.|++|-...-+
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceE
Confidence 345678999999999999999999999755433
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.83 Score=38.13 Aligned_cols=150 Identities=10% Similarity=0.048 Sum_probs=85.6
Q ss_pred CCCEEEEEeecCCCEEEEEeCCCeEEEE-EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC
Q 019847 144 SGEVCGLKWSNEGNLLASGGDDNVVRIW-ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ 222 (335)
Q Consensus 144 ~~~i~~~~~~~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 222 (335)
...+..+.+.|++.+++++. .|.+..- | ........+. ......++.+.+.+++. +++.+ ..|.+++=...
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~--~~~~~~l~~i~~~~~g~-~~~vg---~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQ--RNSSRRLQSMGFQPDGN-LWMLA---RGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEee--CCCcccceeeeEcCCCC-EEEEe---cCCEEEEccCC
Confidence 55788999999887766654 5655432 2 1111222222 23346788999999885 45555 46766543334
Q ss_pred CCceEEEeec-----CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc---CCCCceeEeEEcCCCC
Q 019847 223 KGTCIHGIDA-----KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ---SSNSRILDLSQSPDGL 294 (335)
Q Consensus 223 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~ 294 (335)
.+..-..... ...+..+.+.+++..++++ .+|.+. .....++.-.... .-....+.+.|..+++
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-------~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~ 315 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-------GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK 315 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEEEc-------CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCc
Confidence 4433222221 2347788899988777665 355554 3444444333322 2223577788877776
Q ss_pred EEEEEeCCCcEEEEec
Q 019847 295 TVATAGADETIRFWEA 310 (335)
Q Consensus 295 ~l~~~~~dg~v~iw~~ 310 (335)
.++ .+..|.|.-|+-
T Consensus 316 ~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 316 GFV-LGQRGVLLRYVG 330 (334)
T ss_pred eEE-ECCCceEEEecC
Confidence 655 556788877754
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.64 Score=42.86 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=23.6
Q ss_pred CCceeEeEEcCC---CCEEEEEeCCCcEEEEecCCCCC
Q 019847 281 NSRILDLSQSPD---GLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 281 ~~~i~~~~~~~~---~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
...|..+.|+|. +..|+.-..|+.+|+||+.....
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCC
Confidence 345677777775 46777777777777777765443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.082 Score=28.36 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=31.4
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEe
Q 019847 199 PHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEW 241 (335)
Q Consensus 199 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 241 (335)
|++++++++.. .++.|.++|..+++.+..+........+.+
T Consensus 1 pd~~~lyv~~~--~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNS--GSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeC--CCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 57777888775 689999999999998888876555555544
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.075 Score=28.57 Aligned_cols=31 Identities=32% Similarity=0.334 Sum_probs=26.0
Q ss_pred CCEEEEEeecCC---CEEEEEeCCCeEEEEEccC
Q 019847 145 GEVCGLKWSNEG---NLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 145 ~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~ 175 (335)
+++.++.|+|++ .+|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999843 5888888889999999984
|
It contains a characteristic DLL sequence motif. |
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=95.64 E-value=1 Score=37.02 Aligned_cols=231 Identities=11% Similarity=0.008 Sum_probs=112.7
Q ss_pred eEEEecCCeEEEEEecC--CceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCcee-------------
Q 019847 29 VLAVALGPVLFLWKWEN--GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETSKL------------- 92 (335)
Q Consensus 29 ~~~~~~~~~i~vw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~------------- 92 (335)
.+..|.+..+++.+++. ++..+.+ +...|+++...+.-+.|++-+ ....++.+++..-..
T Consensus 15 ~lL~GTe~Gly~~~~~~~~~~~~kl~----~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 15 WLLVGTEEGLYVLNISDQPGTLEKLI----GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred EEEEEeCCceEEEEcccCCCCeEEec----CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 44445555566666654 3333332 466899999999877766654 334499999842221
Q ss_pred ---EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee-------cCCCCEEEEEeecC--CCEEE
Q 019847 93 ---VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK-------AHSGEVCGLKWSNE--GNLLA 160 (335)
Q Consensus 93 ---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~--~~~l~ 160 (335)
...+ .+................++++....+|.++............. ....++..+..+++ ...+.
T Consensus 91 ~~~~~~~-~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 91 KNVLTKI-PDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred ccceEeC-CcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence 1111 23332223333321233445555666777765432211111111 11223333333432 45777
Q ss_pred EEeCCCeEEEEEccC--CCcccc-ee-eccCCC-CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceE--EEeecC
Q 019847 161 SGGDDNVVRIWERSK--MSSSKS-LH-RFTDHC-GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI--HGIDAK 233 (335)
Q Consensus 161 ~~~~dg~i~iwd~~~--~~~~~~-~~-~~~~~~-~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~~ 233 (335)
.|+..+...++++.. ...... +. ...... .++.... -+++..+++ .|....+.|....+.. ..+.-.
T Consensus 170 vG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~-l~~~e~Llc-----~~~~~v~Vn~~G~~~~r~~~l~w~ 243 (302)
T smart00036 170 IGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQ-VPRDEFLLC-----YDEFGVFVNLYGKRRSRNPILHWE 243 (302)
T ss_pred EEEcCCCCeEEEEeecccccccccccccccccccCceEEEE-ECCCeEEEE-----ECcEEEEEeCCCCccccceEEEcC
Confidence 777642344444432 110000 00 001111 3333333 444443333 4666777776531221 233334
Q ss_pred CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccC
Q 019847 234 AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS 279 (335)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 279 (335)
..+.++++.. .+++.- .++.|.++++.+++.++++..
T Consensus 244 ~~p~~~~~~~--pyll~~-------~~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 244 FMPESFAYHS--PYLLAF-------HDNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred CcccEEEEEC--CEEEEE-------cCCcEEEEECCCCceEEEEec
Confidence 4555666653 344332 367799999999998887764
|
Unpublished observations. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.0016 Score=54.50 Aligned_cols=142 Identities=14% Similarity=0.315 Sum_probs=99.2
Q ss_pred CEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc
Q 019847 146 EVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT 225 (335)
Q Consensus 146 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~ 225 (335)
......|-|++.-++.++.+..+..||-.. +.+.. ...++....++|..+++.+++.+- ..+.+.+||+.+..
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~ag----q~~le-~n~tg~aldm~wDkegdvlavlAe--k~~piylwd~n~ey 108 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAG----QVILE-LNPTGKALDMAWDKEGDVLAVLAE--KTGPIYLWDVNSEY 108 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhc----ceecc-cCCchhHhhhhhccccchhhhhhh--cCCCeeechhhhhh
Confidence 334567788776688888888899998432 11221 223455678899998888777765 78999999987532
Q ss_pred eEEEee--cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC
Q 019847 226 CIHGID--AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302 (335)
Q Consensus 226 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 302 (335)
. ..++ ....-.-+.|++.+..++.+ ...+.+.|++..+.+.+...-.|..+++++++.+.+. .+.++.|
T Consensus 109 t-qqLE~gg~~s~sll~wsKg~~el~ig------~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd 179 (615)
T KOG2247|consen 109 T-QQLESGGTSSKSLLAWSKGTPELVIG------NNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCD 179 (615)
T ss_pred H-HHHhccCcchHHHHhhccCCcccccc------ccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcH
Confidence 2 1222 12222337889988888887 4589999999988887777666889999999999875 4444444
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.1 Score=37.36 Aligned_cols=152 Identities=13% Similarity=0.138 Sum_probs=85.2
Q ss_pred ccceeEeeecCCCCCEEEEeeCCCcEEEE-ecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCc
Q 019847 100 HRRVATSSWNHWNGHILTSGSKDKSIINH-DVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSS 178 (335)
Q Consensus 100 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~-d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 178 (335)
...+..+.+.| ++.++++ +..|.+..- +-. +..-..........++++.+.++++.++++ ..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~-~g~~v~~-g~~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAV-SSRGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEE-eCCceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688888888 6655544 445655432 211 122222223345678999999998877765 467665422333333
Q ss_pred ccceeec-cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee----cCCcEeEEEeCCCCceeeeeee
Q 019847 179 SKSLHRF-TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID----AKAQICGLEWNRHHKEILSGHG 253 (335)
Q Consensus 179 ~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 253 (335)
.+..... ......+..+.+.|++. +++++ .+|.+.. ....++.-...+ .......+.+..+++.+++|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G---~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-- 320 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGG---GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-- 320 (334)
T ss_pred cccccCCccccccceeeEEEcCCCC-EEEEc---CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC--
Confidence 3322211 11223477889998764 66655 4676553 444444333332 12357777777777777765
Q ss_pred eeeecCCCeEEEEE
Q 019847 254 FSASGDGNKLCLWK 267 (335)
Q Consensus 254 ~~~~~~~~~i~i~d 267 (335)
..|.|..++
T Consensus 321 -----~~G~il~~~ 329 (334)
T PRK13684 321 -----QRGVLLRYV 329 (334)
T ss_pred -----CCceEEEec
Confidence 467776665
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.60 E-value=1 Score=36.76 Aligned_cols=269 Identities=14% Similarity=0.134 Sum_probs=121.4
Q ss_pred ccccceeeeecC-CceEEEecCCeEEEEEe-cCCceeeEEeecCC---CCCceEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 019847 15 EDYYSKVIDWGR-NNVLAVALGPVLFLWKW-ENGKVKKLLQVPGE---DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET 89 (335)
Q Consensus 15 ~~~~~~~~~~~~-~~~~~~~~~~~i~vw~~-~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 89 (335)
.+..+..+.|.+ +.-++++..+.| +.. +.|+.=........ .-...++.|..+ +.+++| ..| +.+...+.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~Dg 89 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTDG 89 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETTTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESST
T ss_pred CCCceEEEEEecCCEEEEEecCCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecCC
Confidence 444667788876 455666666654 333 33332122111111 123567777543 344444 444 44444444
Q ss_pred ceeEeeec---ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee-eEEeecCCCCEEEEEeecCCCEEEEEeCC
Q 019847 90 SKLVRNLE---GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV-TSCIKAHSGEVCGLKWSNEGNLLASGGDD 165 (335)
Q Consensus 90 ~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 165 (335)
|+.=..+. .-......+.... ++..++ .+..|.| |....+..- ......-.+.+..+.-+++|++++++...
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~i--y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAI--YRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--E--EEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcE--EEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 43322221 1122333344333 333333 3444543 333333321 22234455778889889999999988766
Q ss_pred CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEEC-CCCceEEE--ee---cCCcEeEE
Q 019847 166 NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV-QKGTCIHG--ID---AKAQICGL 239 (335)
Q Consensus 166 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~-~~~~~~~~--~~---~~~~~~~~ 239 (335)
....-||--. ....+.. ......|..+.|.|++. +...+ ..|.|++=+. ...+.-.. .+ ....+..+
T Consensus 166 ~~~~s~~~G~-~~w~~~~--r~~~~riq~~gf~~~~~-lw~~~---~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~ 238 (302)
T PF14870_consen 166 NFYSSWDPGQ-TTWQPHN--RNSSRRIQSMGFSPDGN-LWMLA---RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDL 238 (302)
T ss_dssp SEEEEE-TT--SS-EEEE----SSS-EEEEEE-TTS--EEEEE---TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEE
T ss_pred cEEEEecCCC-ccceEEc--cCccceehhceecCCCC-EEEEe---CCcEEEEccCCCCccccccccCCcccCceeeEEE
Confidence 6666777332 1122222 22457799999999975 44444 5788888772 22222111 11 12348899
Q ss_pred EeCCCCceeeeeeeeeeecCCCeEEEEECCCCceee---cccCCCCceeEeEEcCCCCEEEEEeCCCcEEEE
Q 019847 240 EWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVG---ELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308 (335)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw 308 (335)
+|.+++...++|. .|. .+...+.++.-. ....-...++.+.|.++.+-++ -+.+|.+.-|
T Consensus 239 a~~~~~~~wa~gg-------~G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 239 AYRPPNEIWAVGG-------SGT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp EESSSS-EEEEES-------TT--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred EecCCCCEEEEeC-------Ccc-EEEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 9999988887762 333 333444444322 2233345678888876655444 5578887655
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.5 Score=40.01 Aligned_cols=127 Identities=12% Similarity=0.099 Sum_probs=80.9
Q ss_pred EeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEe----ecC-CcE
Q 019847 162 GGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI----DAK-AQI 236 (335)
Q Consensus 162 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~----~~~-~~~ 236 (335)
+...|.+.=|-...+....++..-....++|.++.|++|++ +++.-. .+..|.+++....+..... +.+ ..|
T Consensus 39 avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR--~~~~v~f~nf~~d~~~l~~~~~ck~k~~~I 115 (657)
T KOG2377|consen 39 AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQR--TSKTVDFCNFIPDNSQLEYTQECKTKNANI 115 (657)
T ss_pred EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEe--cCceEEEEecCCCchhhHHHHHhccCccee
Confidence 33455566676665544444444445678999999999996 555544 7999999998544332222 222 348
Q ss_pred eEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC-CceeecccCCCCceeEeEEcCCCCEEEEE
Q 019847 237 CGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN-MTKVGELQSSNSRILDLSQSPDGLTVATA 299 (335)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 299 (335)
....|+......+.. +..+.+|.... .+.++..+.|...|.-..|.++-+.++-+
T Consensus 116 lGF~W~~s~e~A~i~--------~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 116 LGFCWTSSTEIAFIT--------DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred EEEEEecCeeEEEEe--------cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 888998874444333 55667776543 34455566777788888888887654443
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.47 E-value=1.4 Score=37.69 Aligned_cols=145 Identities=10% Similarity=0.167 Sum_probs=83.2
Q ss_pred CCCEEEEEECCCcEEEEeCCCce-----eEeeecccccceeEeeec---CCCCCEEEEeeCCCcEEEEecccCC------
Q 019847 69 DAKTLAVGYMDSKLQLWDAETSK-----LVRNLEGHHRRVATSSWN---HWNGHILTSGSKDKSIINHDVRVSN------ 134 (335)
Q Consensus 69 ~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~~~d~~~~~------ 134 (335)
+...+++|+..|.++||+....+ .+-+. .-..+|..+..- +......++.-.-..+.+|.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 34689999999999999985433 12222 234677776643 3234344444667788888874221
Q ss_pred --eeeEEeecCC--CCEEEEEeec----C-CCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEE
Q 019847 135 --NVTSCIKAHS--GEVCGLKWSN----E-GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVL 205 (335)
Q Consensus 135 --~~~~~~~~~~--~~i~~~~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 205 (335)
........|. .....+++-| . ..++++-+.||.+.+|+-+... ...+.+..--...+++.+..+.++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~----f~~~lp~~llPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA----FSRFLPDFLLPGPLCYCPRTDSFV 190 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE----EEEEcCCCCCCcCeEEeecCCEEE
Confidence 1122223333 2334444434 2 3688889999999999954321 111111122223466777766666
Q ss_pred EEecCCCCCeEEEEEC
Q 019847 206 ATGGGREDGCIKIWNV 221 (335)
Q Consensus 206 ~~~~g~~d~~i~i~d~ 221 (335)
++. .+..+..|..
T Consensus 191 t~s---ss~~l~~Yky 203 (418)
T PF14727_consen 191 TAS---SSWTLECYKY 203 (418)
T ss_pred Eec---CceeEEEecH
Confidence 655 4677887764
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=2.2 Score=39.65 Aligned_cols=241 Identities=10% Similarity=0.035 Sum_probs=119.5
Q ss_pred ccceeeeecCC-ceEEEecC--C----eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC------CcEE
Q 019847 17 YYSKVIDWGRN-NVLAVALG--P----VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD------SKLQ 83 (335)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~--~----~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~ 83 (335)
+.+..+.|+++ ++++.+.| | .+++.|+.+++.... .+.+ . -..++|.+|++.|+....+ ..|.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-LLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-cccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 55666788874 56665543 2 688999988863221 1111 1 1569999999877766542 3678
Q ss_pred EEeCCCc--eeEeeecccccceeEeeecCCCCCEEEEeeC---CCcEEEEecccC-CeeeEEeecCCCCEEEEEeecCCC
Q 019847 84 LWDAETS--KLVRNLEGHHRRVATSSWNHWNGHILTSGSK---DKSIINHDVRVS-NNVTSCIKAHSGEVCGLKWSNEGN 157 (335)
Q Consensus 84 iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~ 157 (335)
.+++.++ +....+........-..+.+.++..++..+. ++.+.+++.... ......+.........+. +..+.
T Consensus 203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 281 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHR 281 (686)
T ss_pred EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCE
Confidence 8888877 3333344333333322233336665554433 357888885321 111222222222222222 32333
Q ss_pred EEEEEeCC---CeEEEEEccCCCcccceeeccCC-C-CCeeEEEecCCCCcEEEEecCCCCCeEEEE--ECCCCceEEEe
Q 019847 158 LLASGGDD---NVVRIWERSKMSSSKSLHRFTDH-C-GGVKALAWSPHQVNVLATGGGREDGCIKIW--NVQKGTCIHGI 230 (335)
Q Consensus 158 ~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~--d~~~~~~~~~~ 230 (335)
+++....+ ..|...++.... ....+..+ . ..+..+.+. ++.++++.. .++.-+++ +...+ .+..+
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~---~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~--~~g~~~l~~~~~~~~-~~~~l 353 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQ---QWEELIPPRENIMLEGFTLF--TDWLVVEER--QRGLTSLRQINRKTR-EVIGI 353 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcc---cCeEEECCCCCCEEEEEEEE--CCEEEEEEE--eCCEEEEEEEcCCCC-ceEEe
Confidence 33333222 234444443211 12233334 2 357777777 336777665 56655554 54333 33444
Q ss_pred ec--CCcEeEEEeC--CCCceeeeeeeeeeecCCCeEEEEECCCCc
Q 019847 231 DA--KAQICGLEWN--RHHKEILSGHGFSASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 231 ~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 272 (335)
.. ...+..+..+ +++..+... +.+-..-+.+..+|..+++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~--~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 354 AFDDPAYVTWIAYNPEPETSRLRYG--YSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred cCCCCceEeeecccCCCCCceEEEE--EecCCCCCEEEEEECCCCc
Confidence 32 2223333344 444434332 2223456888889987764
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.0016 Score=54.51 Aligned_cols=239 Identities=14% Similarity=0.159 Sum_probs=133.2
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE
Q 019847 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC 139 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 139 (335)
......|-|.+.-++.++.+..+..||-. ++...... .++....++|....+..++.+-..+.+.+||+.+.....-.
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 34456788877778888888889999844 44443333 45667788888733344556677899999999754321111
Q ss_pred eecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEE
Q 019847 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219 (335)
Q Consensus 140 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~ 219 (335)
. +-...-.-+.|++....++.+...|.+.+++.... +.+.....|...+.++++.+.+. .+. ++ .|..+.+-
T Consensus 114 ~-gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts---R~iiv~Gkh~RRgtq~av~lEd~-vil-~d--cd~~L~v~ 185 (615)
T KOG2247|consen 114 S-GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS---RRIIVMGKHQRRGTQIAVTLEDY-VIL-CD--CDNTLSVT 185 (615)
T ss_pred c-cCcchHHHHhhccCCccccccccccceEEEeccch---hhhhhhcccccceeEEEecccce-eee-cC--cHHHHHHh
Confidence 1 11111222788998888999999999999996553 33333344888899999999873 333 22 45555444
Q ss_pred ECCCCceEEEeecCCcEeE-----E---EeCCCCceeeeeeeeeeecCCCeEEEE-----ECCCCceeecccCCCCceeE
Q 019847 220 NVQKGTCIHGIDAKAQICG-----L---EWNRHHKEILSGHGFSASGDGNKLCLW-----KYPNMTKVGELQSSNSRILD 286 (335)
Q Consensus 220 d~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~i~i~-----d~~~~~~~~~~~~~~~~i~~ 286 (335)
... ++.....+.+..... + .|...|..+.... .+.+++. ..+...-+ .++...+.+.+
T Consensus 186 ~qe-geta~ltevggepdnm~~~y~k~n~w~kage~m~sVv-------sgKkhl~yak~nE~D~pval-~fq~~~gni~c 256 (615)
T KOG2247|consen 186 TQE-GETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVV-------SGKKHLMYAKYNELDEPVAL-QFQEKYGNIHC 256 (615)
T ss_pred hhc-cceeeeeeccCccchhhhheeeeeccccccceeeeee-------ecHHHHHHHhhcCCCCccce-EeeecCCceeE
Confidence 322 222222222221111 1 2333333332211 1111111 01111112 34444556778
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 287 LSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 287 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
..|--||. |.-+-.-|.|..-...+.+...+
T Consensus 257 yrwylDg~-i~igf~ag~iV~iS~h~aeLgae 287 (615)
T KOG2247|consen 257 YRWYLDGY-ILIGFDAGYIVSISAHNAELGAE 287 (615)
T ss_pred EEEecccc-ccccccceeEEEEeccchHHHHH
Confidence 88888875 44455556666666555544433
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.24 Score=38.33 Aligned_cols=62 Identities=10% Similarity=0.130 Sum_probs=46.9
Q ss_pred CCCEEEEeeCCCcEEEEecccCCeeeEE------ee-------cCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 112 NGHILTSGSKDKSIINHDVRVSNNVTSC------IK-------AHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 112 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~------~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
.++++++-+.+|.+++||+.+.+..... +. .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 7788999999999999999876643322 22 3456788888888888777765 5788888854
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.27 Score=38.12 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=53.5
Q ss_pred cccceeeeecCCceEEEecCCeEEEEEecCCceeeEE----e-ec-------CCCCCceEEEEcCCCCEEEEEECCCcEE
Q 019847 16 DYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLL----Q-VP-------GEDDYPTSVSWSHDAKTLAVGYMDSKLQ 83 (335)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~----~-~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (335)
...+..+...++.+++.+.+|.+++||+.+++..... . +. .....|..+.++.+|.-+++- .+|..+
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y 90 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSY 90 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEE
Confidence 3445557777888999999999999999987653211 0 11 345678888888888766655 467888
Q ss_pred EEeCCCcee
Q 019847 84 LWDAETSKL 92 (335)
Q Consensus 84 iw~~~~~~~ 92 (335)
.|+..-+.-
T Consensus 91 ~y~~~L~~W 99 (219)
T PF07569_consen 91 SYSPDLGCW 99 (219)
T ss_pred Eecccccee
Confidence 888664433
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=94.96 E-value=2.5 Score=37.65 Aligned_cols=248 Identities=15% Similarity=0.130 Sum_probs=117.5
Q ss_pred CceEEEecCCeEEEEEecCCce-eeEEeecCC-CCCceEEEEcCCC-CEEEEEEC--CCcEEEEeCCCceeEeeeccccc
Q 019847 27 NNVLAVALGPVLFLWKWENGKV-KKLLQVPGE-DDYPTSVSWSHDA-KTLAVGYM--DSKLQLWDAETSKLVRNLEGHHR 101 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~~~-~~~~~~~~~-~~~v~~~~~~~~~-~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~ 101 (335)
+.++.+..+|.+....+..... .....+ +. .....++.+..+| .+|+.|+. |+.+.-|....-+.+..+. .-+
T Consensus 223 ~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~ 300 (504)
T PF10433_consen 223 DRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWG 300 (504)
T ss_dssp SEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----
T ss_pred CEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcC
Confidence 4688888999999988876442 122222 12 3445667766555 47777775 4555555544445555555 457
Q ss_pred ceeEeeecCC---CCC------EEEEee---CCCcEEEEecccCCe-eeEEeecC--CCCEEEEEeec-CCCEEEEEeCC
Q 019847 102 RVATSSWNHW---NGH------ILTSGS---KDKSIINHDVRVSNN-VTSCIKAH--SGEVCGLKWSN-EGNLLASGGDD 165 (335)
Q Consensus 102 ~v~~~~~~~~---~~~------~l~~~~---~dg~i~~~d~~~~~~-~~~~~~~~--~~~i~~~~~~~-~~~~l~~~~~d 165 (335)
+|..++..+. ... .|++++ .+|.+++..---+-. ........ -..++.+.... ++.+|+.+..+
T Consensus 301 Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~ 380 (504)
T PF10433_consen 301 PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPN 380 (504)
T ss_dssp SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESS
T ss_pred CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCC
Confidence 8888887531 121 455543 567888775321111 01111112 22344444332 24566666644
Q ss_pred CeEEEEEccC---CCccccee--eccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec--CCcEeE
Q 019847 166 NVVRIWERSK---MSSSKSLH--RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA--KAQICG 238 (335)
Q Consensus 166 g~i~iwd~~~---~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--~~~~~~ 238 (335)
.-+++.+.. .+....+. .+......+.+-.+. ++ .++=+ ....|++.+...++....... +..|.+
T Consensus 381 -~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~~-~ivQV----t~~~i~l~~~~~~~~~~~w~~~~~~~I~~ 453 (504)
T PF10433_consen 381 -ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-DG-RIVQV----TPKGIRLIDLEDGKLTQEWKPPAGSIIVA 453 (504)
T ss_dssp -EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET-TT-EEEEE----ESSEEEEEESSSTSEEEEEE-TTS---SE
T ss_pred -ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-CC-eEEEE----ecCeEEEEECCCCeEEEEEeCCCCCeEEE
Confidence 555666542 11111111 121112223333332 33 44444 357799999888877766644 334555
Q ss_pred EEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc-----CCCCceeEeEEcC
Q 019847 239 LEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ-----SSNSRILDLSQSP 291 (335)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~ 291 (335)
.+... .+++.. -.++.+..+.+.......... .....|.++...|
T Consensus 454 a~~~~--~~v~v~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 454 ASIND--PQVLVA------LSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEESS--SEEEEE------E-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEECC--CEEEEE------EeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 55443 333333 237888888877665532222 1356688887765
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.87 E-value=3 Score=37.97 Aligned_cols=156 Identities=8% Similarity=0.052 Sum_probs=80.8
Q ss_pred cceeeeecCC-ceEEEecCCeEEEEEecCCceeeE-EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee
Q 019847 18 YSKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKL-LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN 95 (335)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 95 (335)
.+..+.|+.+ .++++..+|.+++|++-....... .-.+.....|..+.+..+|=.+.+ .+|.+.+-+-.......+
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~~~ 162 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKLRK 162 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchhhh
Confidence 5667899985 788999999999999865433221 111333445666667666643333 455555544222222233
Q ss_pred ecc---cccceeEeeecCCC--CCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 96 LEG---HHRRVATSSWNHWN--GHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 96 ~~~---~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
+.. ...+-.|-...++. ...++--...--..++...........+....+.+..+..||+.++|+--...|.|.+
T Consensus 163 ~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~ 242 (829)
T KOG2280|consen 163 MPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWV 242 (829)
T ss_pred CCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEE
Confidence 322 11111222222211 1111111100001122222221111222222356788999999999999999999998
Q ss_pred EEccC
Q 019847 171 WERSK 175 (335)
Q Consensus 171 wd~~~ 175 (335)
-+...
T Consensus 243 vs~D~ 247 (829)
T KOG2280|consen 243 VSIDL 247 (829)
T ss_pred Eecch
Confidence 87653
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.77 E-value=1.1 Score=38.75 Aligned_cols=134 Identities=14% Similarity=0.166 Sum_probs=85.2
Q ss_pred cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCC-------EEEEEECCCcEEEEeCCC-ceeEeeecccccceeE
Q 019847 34 LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAK-------TLAVGYMDSKLQLWDAET-SKLVRNLEGHHRRVAT 105 (335)
Q Consensus 34 ~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~ 105 (335)
....++-.|++.|+......+ |.. + -+.|.|+.+ .-++|-.+..|.-.|.+- |..+.... ...-++-
T Consensus 488 ~~~kLykmDIErGkvveeW~~--~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~tK 562 (776)
T COG5167 488 ERDKLYKMDIERGKVVEEWDL--KDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKTK 562 (776)
T ss_pred CcccceeeecccceeeeEeec--CCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhcccc
Confidence 445777788889988776665 332 3 567777532 234455555565556542 32222111 1122222
Q ss_pred eeecC---CCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 106 SSWNH---WNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 106 ~~~~~---~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
-.|+. ....++++++..|-|++||-- +......+.+....|..+..+.+|+++++.+ ...+.+-|++
T Consensus 563 n~Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 563 NKFSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred ccccccccccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 22221 156789999999999999965 4444556777888999999999999888777 4577787765
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.2 Score=42.30 Aligned_cols=167 Identities=13% Similarity=0.072 Sum_probs=92.5
Q ss_pred ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeec-CCCC----EE-EEEeecCCCEEEEEeCCCeEEEE
Q 019847 98 GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA-HSGE----VC-GLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 98 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~----i~-~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
.....+..+-..| +++.+..-+. .++.++++.+.....+.+.. ..+. |+ .+..-..|.-+.+++.||-|.-|
T Consensus 218 ~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 218 VPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW 295 (733)
T ss_pred CCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence 3445666777778 8888877665 67888888644322222111 1111 11 11112245668888899988766
Q ss_pred -EccCCCccc--ceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCcee
Q 019847 172 -ERSKMSSSK--SLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEI 248 (335)
Q Consensus 172 -d~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (335)
|.+...... .++.++-...++..+.-..+. .-+++-. .+|++.++.....+.+-.-..-..+.-+++||++.++
T Consensus 296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~r-kgF~~l~--~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~L 372 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNR-KGFYSLY--RNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYL 372 (733)
T ss_pred eeeecCCCCcceeeeccccCcccceeecccccc-ceEEEEc--CCCceeeeecccCcceehhhhhcCcceeeeCcccchh
Confidence 655443211 122222222333333222222 2333333 6777777765544443333333456778999999999
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceeec
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVGE 276 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 276 (335)
++- +.|.++++.+++..+.-+
T Consensus 373 l~e-------~~gki~~~~l~Nr~Peis 393 (733)
T COG4590 373 LSE-------DQGKIRLAQLENRNPEIS 393 (733)
T ss_pred eee-------cCCceEEEEecCCCCCcc
Confidence 874 578999999887665433
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.091 Score=47.98 Aligned_cols=117 Identities=14% Similarity=0.117 Sum_probs=68.3
Q ss_pred CCcEEEEeCCCce-eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccC--C----eeeEEeecCCCCEEEEE
Q 019847 79 DSKLQLWDAETSK-LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVS--N----NVTSCIKAHSGEVCGLK 151 (335)
Q Consensus 79 dg~i~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--~----~~~~~~~~~~~~i~~~~ 151 (335)
.+.+++-+..+.- .-..+++..+.+..+.|...+-..+. -.-|.+.+||+..- + ..+.........+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 4567777655432 11234566778888888654433333 44578899987631 1 12222333344456666
Q ss_pred eec---CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCC
Q 019847 152 WSN---EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQ 201 (335)
Q Consensus 152 ~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 201 (335)
|.| +.-++..+..++.+++...++.. ...+.+|...+..++|-..|
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~----~~l~rsHs~~~~d~a~~~~g 236 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRAL----RSLFRSHSQRVTDMAFFAEG 236 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHH----HHHHHhcCCCcccHHHHhhc
Confidence 665 66778888888999988766532 23444577666666554433
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.57 Score=42.18 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=45.5
Q ss_pred cCCceEEEecCCeEEEEEecC----CceeeEEeecC--------------------CCCCceEEEEcC----CCCEEEEE
Q 019847 25 GRNNVLAVALGPVLFLWKWEN----GKVKKLLQVPG--------------------EDDYPTSVSWSH----DAKTLAVG 76 (335)
Q Consensus 25 ~~~~~~~~~~~~~i~vw~~~~----~~~~~~~~~~~--------------------~~~~v~~~~~~~----~~~~l~~~ 76 (335)
++..++++..||.+....... +.......+.. ....+..+++++ +..+|++-
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 667888888999888888764 22111111111 123456667766 77899999
Q ss_pred ECCCcEEEEeCCCceeEeee
Q 019847 77 YMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 77 ~~dg~i~iw~~~~~~~~~~~ 96 (335)
+.|+.+|+||+.+++++...
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEe
Confidence 99999999999999986654
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.1 Score=31.15 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=57.2
Q ss_pred EEeecCCCEEEEEeCCCeEEEEEccCCCc-----ccceeeccCCCCCeeEEEecC----CCCcEEEEecCCCCCeEEEEE
Q 019847 150 LKWSNEGNLLASGGDDNVVRIWERSKMSS-----SKSLHRFTDHCGGVKALAWSP----HQVNVLATGGGREDGCIKIWN 220 (335)
Q Consensus 150 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~g~~d~~i~i~d 220 (335)
-.|......|+.++.-|+|.|++...... ...+..+ .-...|++++--+ ++..++..| ....+..||
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliG---t~t~llaYD 79 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIG---TQTSLLAYD 79 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEe---ccceEEEEE
Confidence 34555666788888999999998654321 1122222 2455677776544 334577777 488999999
Q ss_pred CCCCceEEEeecCCcEeEEEe
Q 019847 221 VQKGTCIHGIDAKAQICGLEW 241 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~ 241 (335)
+.+...+..-+.+..+.++.+
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~ 100 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVI 100 (136)
T ss_pred cccCchhhhhhCccceeEEEE
Confidence 998877666566666666655
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=94.33 E-value=1.8 Score=34.99 Aligned_cols=114 Identities=20% Similarity=0.335 Sum_probs=69.4
Q ss_pred CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEee------CCCcEEEEecccCCeeeEEeec-----CCCCEE
Q 019847 80 SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS------KDKSIINHDVRVSNNVTSCIKA-----HSGEVC 148 (335)
Q Consensus 80 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~-----~~~~i~ 148 (335)
..|++||..+.+....-.+-.+.|+.+.|.. +..+++.|. ....+..||..+... ..+.. -.+++.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w--~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTW--SSLGGGSSNSIPGPVT 92 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCee--eecCCcccccCCCcEE
Confidence 4699999988877766666778999999986 677777764 355788888875432 22222 347888
Q ss_pred EEEeec-CC-CEEEEEe-C--CCeEEEEEccCCCcccceee-ccCCCCCeeEEEecC
Q 019847 149 GLKWSN-EG-NLLASGG-D--DNVVRIWERSKMSSSKSLHR-FTDHCGGVKALAWSP 199 (335)
Q Consensus 149 ~~~~~~-~~-~~l~~~~-~--dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~ 199 (335)
.+.+.. ++ ++.+.|. . +..|..|| +.....+.. .......|..+.+-|
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~d---Gs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYD---GSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEc---CCceEeccccccCCCCEEEEEEEEe
Confidence 888754 33 3444443 2 33577777 433443433 222234455555443
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=94.22 E-value=2.8 Score=34.86 Aligned_cols=99 Identities=11% Similarity=0.086 Sum_probs=51.2
Q ss_pred eeeecCCceEEEec------CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCC----cEEEEeCCCc
Q 019847 21 VIDWGRNNVLAVAL------GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDS----KLQLWDAETS 90 (335)
Q Consensus 21 ~~~~~~~~~~~~~~------~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iw~~~~~ 90 (335)
+.+..++.+++.+. ...+..||+.+.+......++... .....+...++++.+.|+.++ .+.+||.++.
T Consensus 118 ~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 118 SACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 33444555555443 246888998888765543333211 112222334677778887654 3568888876
Q ss_pred eeEeeecc----ccc---ceeEeeecCCCCCEEEEeeCC
Q 019847 91 KLVRNLEG----HHR---RVATSSWNHWNGHILTSGSKD 122 (335)
Q Consensus 91 ~~~~~~~~----~~~---~v~~~~~~~~~~~~l~~~~~d 122 (335)
+-...-.. ... ....+.. . ++.+++.|+.+
T Consensus 197 ~W~~~~~~~~~~~p~~~~~~~~~~~-~-~~~iyv~GG~~ 233 (323)
T TIGR03548 197 QWQKVADPTTDSEPISLLGAASIKI-N-ESLLLCIGGFN 233 (323)
T ss_pred eeEECCCCCCCCCceeccceeEEEE-C-CCEEEEECCcC
Confidence 54322110 011 1111222 2 57788888876
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.17 E-value=3.7 Score=36.15 Aligned_cols=274 Identities=17% Similarity=0.099 Sum_probs=135.2
Q ss_pred CCcccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 12 YLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
....+..+.++-++-+..+-++.+.-+..||..+++..+.-.. ....+|..+..+-+| .|.+|+.+| +.+.+.+..+
T Consensus 160 ~ll~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalql~s~-~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~ 236 (671)
T COG3292 160 PLLKDTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQLASP-PLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWR 236 (671)
T ss_pred ccccCccceeeeeeccCcEEEecCCcceEEccccceEEEcCCC-cchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhcc
Confidence 4445667777777775555555555688888888876544322 223567766666566 477787776 8888876643
Q ss_pred eEeeeccc-ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC--CCCEEEEEeecCCCEEEEEeCCCeE
Q 019847 92 LVRNLEGH-HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH--SGEVCGLKWSNEGNLLASGGDDNVV 168 (335)
Q Consensus 92 ~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i 168 (335)
........ .+.|..+.-. ....+-.|+.+|..+.- ...........+.| -+.|.++.-..+|. |-+++.+|.+
T Consensus 237 ~sn~~~~lp~~~I~ll~qD--~qG~lWiGTenGl~r~~-l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv 312 (671)
T COG3292 237 ASNWGPMLPSGNILLLVQD--AQGELWIGTENGLWRTR-LPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIV 312 (671)
T ss_pred ccccCCCCcchheeeeecc--cCCCEEEeecccceeEe-cCCCCccccccccCCccccccceeeccCCC-EeeeccCceE
Confidence 33322222 2333333332 33445566666644322 22122111111122 23456665555665 6666667666
Q ss_pred EEEEccCCCcccceeeccCCCCCe-eEEEecC--CCCcEEEEecCCCCCeEEEEECCCCceEEEeec--CCcEeEEEeCC
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGV-KALAWSP--HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA--KAQICGLEWNR 243 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v-~~~~~~~--~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~ 243 (335)
++-+-. ......+....+.+ -..+..| .+..+...- .-|.+.+-+-.++..+..... +..++..++..
T Consensus 313 ~~~~a~----w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n---s~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~ 385 (671)
T COG3292 313 RYLTAD----WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN---SIGELMVANGSTGELVRSVHQLRGMNITTTLEDS 385 (671)
T ss_pred EEecch----hhheeeeecCCCchhhhhccCchhcccceeecc---ccceEEEecCCCCcEEEEeeeccccccchhhhcc
Confidence 654421 11111111111111 1111122 111111110 123344444455555444321 23456666666
Q ss_pred CCceeeeeeeeeeecCCCeEEEEECCC-CceeecccC-CCCceeEeEEcCCCCEEEEEeCCCcEEE
Q 019847 244 HHKEILSGHGFSASGDGNKLCLWKYPN-MTKVGELQS-SNSRILDLSQSPDGLTVATAGADETIRF 307 (335)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~i 307 (335)
++..-+. +..+-+..|+.++ +.......+ ..++|..+-=.|+++ |..|+.+|.++.
T Consensus 386 ~g~lWlg-------s~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 386 RGRLWLG-------SMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred CCcEEEE-------ecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 5544332 3344555666555 333333222 345788888888888 777888886653
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.10 E-value=4.7 Score=37.05 Aligned_cols=146 Identities=12% Similarity=0.174 Sum_probs=85.9
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcccc---eeecc----------------CCCCCeeEEEecCC-CCcEEEEecCCCCCe
Q 019847 156 GNLLASGGDDNVVRIWERSKMSSSKS---LHRFT----------------DHCGGVKALAWSPH-QVNVLATGGGREDGC 215 (335)
Q Consensus 156 ~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~----------------~~~~~v~~~~~~~~-~~~~~~~~~g~~d~~ 215 (335)
.++++++. .+.|.||+++....... ...+. .....|+.+....- +..+++.+. +||.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~--DdG~ 125 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCT--DDGD 125 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEe--cCCe
Confidence 55666655 67899998764332110 00000 01122444433322 234555555 8999
Q ss_pred EEEEECCC-------C-------------ceEEEeecCCcEeEEEeC--CCCceeeeeeeeeeecCCCeEEEEECCCC-c
Q 019847 216 IKIWNVQK-------G-------------TCIHGIDAKAQICGLEWN--RHHKEILSGHGFSASGDGNKLCLWKYPNM-T 272 (335)
Q Consensus 216 i~i~d~~~-------~-------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~ 272 (335)
|.+|.+++ . ++...+..+....+++++ ...+++|++ +....|.||-.... +
T Consensus 126 V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVS------sNs~~VTVFaf~l~~~ 199 (717)
T PF08728_consen 126 VLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVS------SNSQEVTVFAFALVDE 199 (717)
T ss_pred EEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEe------cCCceEEEEEEecccc
Confidence 99997621 0 122333446678889988 777777776 66777888765432 1
Q ss_pred eeec--ccCCCCceeEeEEcCCC------CEEEEEeCCCcEEEEec
Q 019847 273 KVGE--LQSSNSRILDLSQSPDG------LTVATAGADETIRFWEA 310 (335)
Q Consensus 273 ~~~~--~~~~~~~i~~~~~~~~~------~~l~~~~~dg~v~iw~~ 310 (335)
.... -..|...|.+|+|-++. ..|++++-.|.+.+|++
T Consensus 200 r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 200 RFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1111 11245568899987753 27888899999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=93.79 E-value=1.2 Score=33.04 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=24.8
Q ss_pred CCEEEEEeecCC------CEEEEEeCCCeEEEEEcc
Q 019847 145 GEVCGLKWSNEG------NLLASGGDDNVVRIWERS 174 (335)
Q Consensus 145 ~~i~~~~~~~~~------~~l~~~~~dg~i~iwd~~ 174 (335)
..+..++|||.| -+||+.+.++.|.+|...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 478999999943 478889999999999844
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.73 E-value=6.5 Score=37.41 Aligned_cols=87 Identities=11% Similarity=0.124 Sum_probs=61.0
Q ss_pred CCCCcccccceeeeecCCceEEEecCCeEEEEEec-CCceeeEEeecCCCCCceEEEEcCCC------CEEEEEECCCcE
Q 019847 10 APYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWE-NGKVKKLLQVPGEDDYPTSVSWSHDA------KTLAVGYMDSKL 82 (335)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~dg~i 82 (335)
.-..|....+.+.+.+...++.+-+++.+.-+..+ ++++....+-..-+..|.|+++.+++ ++++.++.|+.+
T Consensus 533 ew~~P~~~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~v 612 (1205)
T KOG1898|consen 533 EWKTPERVRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMV 612 (1205)
T ss_pred cccCCCceEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccce
Confidence 33456777777888888888888888888777764 34443333223345678899998864 579999999999
Q ss_pred EEEeCCCceeEeee
Q 019847 83 QLWDAETSKLVRNL 96 (335)
Q Consensus 83 ~iw~~~~~~~~~~~ 96 (335)
+++.+.....+..+
T Consensus 613 riisL~p~d~l~~l 626 (1205)
T KOG1898|consen 613 RIISLDPSDCLQPL 626 (1205)
T ss_pred eEEEecCcceEEEc
Confidence 99988755544443
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=93.67 E-value=3.8 Score=34.56 Aligned_cols=189 Identities=16% Similarity=0.237 Sum_probs=106.9
Q ss_pred CCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec----CCCE--EEEEe-CC---CeEEEEEccCCCcccc
Q 019847 112 NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN----EGNL--LASGG-DD---NVVRIWERSKMSSSKS 181 (335)
Q Consensus 112 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~--l~~~~-~d---g~i~iwd~~~~~~~~~ 181 (335)
...+++....++-+.+||+. ++.+ +.+. .+.++.+..-. .++. |+.++ .+ ..|++|.+.... ..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~l-q~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~--g~ 140 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKEL-QSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT--GE 140 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EE-EEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT--TE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEE-Eeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC--Cc
Confidence 55678888888999999997 5443 3332 23444444321 3332 44444 32 469999876321 12
Q ss_pred eeeccC-------CCCCeeEEEe--cC-CCCcEEEEecCCCCCeEEEEECC---CC----ceEEEeecCCcEeEEEeCCC
Q 019847 182 LHRFTD-------HCGGVKALAW--SP-HQVNVLATGGGREDGCIKIWNVQ---KG----TCIHGIDAKAQICGLEWNRH 244 (335)
Q Consensus 182 ~~~~~~-------~~~~v~~~~~--~~-~~~~~~~~~~g~~d~~i~i~d~~---~~----~~~~~~~~~~~~~~~~~~~~ 244 (335)
+..+.. ....+..+|+ +| ++...+.... .+|.+..|.+. ++ +.++.+.....+..+..+..
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~--k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe 218 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG--KDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDE 218 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE--TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETT
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec--CCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecc
Confidence 322221 1234666776 34 3544555444 78988888764 33 46788888889999999999
Q ss_pred CceeeeeeeeeeecCCCeEEEEECCC-----CceeecccC--CCCceeEeEEc--CCC-CEEEEEe-CCCcEEEEecCCC
Q 019847 245 HKEILSGHGFSASGDGNKLCLWKYPN-----MTKVGELQS--SNSRILDLSQS--PDG-LTVATAG-ADETIRFWEAFGP 313 (335)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~i~d~~~-----~~~~~~~~~--~~~~i~~~~~~--~~~-~~l~~~~-~dg~v~iw~~~~~ 313 (335)
...++.+ .++.-|.-|+.+. ++.+....+ ....|..|++- +++ .||++++ .++...+|+...+
T Consensus 219 ~g~LYvg------EE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 219 TGRLYVG------EEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TTEEEEE------ETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred cCCEEEe------cCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 8888887 6677777777652 223322222 33467777764 333 3555444 5778999998865
Q ss_pred C
Q 019847 314 S 314 (335)
Q Consensus 314 ~ 314 (335)
.
T Consensus 293 ~ 293 (381)
T PF02333_consen 293 N 293 (381)
T ss_dssp -
T ss_pred C
Confidence 3
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=93.05 E-value=1 Score=33.45 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=25.4
Q ss_pred cceeEeeecCC-----CCCEEEEeeCCCcEEEEecc
Q 019847 101 RRVATSSWNHW-----NGHILTSGSKDKSIINHDVR 131 (335)
Q Consensus 101 ~~v~~~~~~~~-----~~~~l~~~~~dg~i~~~d~~ 131 (335)
..+..++|+|. ..-+|++.+.++.+.+|...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 48999999983 24578889999999999865
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.69 Score=24.59 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=24.5
Q ss_pred CCCCEEEEEE-CCCcEEEEeCCCceeEeeecc
Q 019847 68 HDAKTLAVGY-MDSKLQLWDAETSKLVRNLEG 98 (335)
Q Consensus 68 ~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 98 (335)
|++++|+++. .+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5777776665 578999999999888887765
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.04 E-value=1.1 Score=43.24 Aligned_cols=163 Identities=12% Similarity=0.098 Sum_probs=86.7
Q ss_pred eCCCcEEEEecccCCeeeEEeecCCCCEEEEEe--------ecCCCEEEEEeCCCeEEEEEccCCCcccceeecc-----
Q 019847 120 SKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKW--------SNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFT----- 186 (335)
Q Consensus 120 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----- 186 (335)
+.|+.+.+|+.+++.. ...+.+.+..|..+.. -|.=++++.-+.--.|.++-+...........+.
T Consensus 96 TiDn~L~lWny~~~~e-~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNE-LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EeCCeEEEEEcCCCCc-cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 3578999999997554 3445555556655543 2222344444445667776554322211122221
Q ss_pred -CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC--CCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeE
Q 019847 187 -DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ--KGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKL 263 (335)
Q Consensus 187 -~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (335)
.....|+++....+| +++.+| .|| .+|.+. ...- -+ ......++. ....+..-
T Consensus 175 ~~dg~~V~~I~~t~nG-RIF~~G---~dg--~lyEl~Yq~~~g--Wf--~~rc~Kicl--t~s~ls~l------------ 230 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENG-RIFFAG---RDG--NLYELVYQAEDG--WF--GSRCRKICL--TKSVLSSL------------ 230 (1311)
T ss_pred ecCCceEEEEEeccCC-cEEEee---cCC--CEEEEEEeccCc--hh--hcccccccC--chhHHHHh------------
Confidence 224557788866666 566666 566 444331 1000 00 000000110 00000000
Q ss_pred EEEECCCCceeecc-cCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 264 CLWKYPNMTKVGEL-QSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 264 ~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
+. . +..+ -.+..+|..++.......+.+-+..|.|++|++....
T Consensus 231 ----vP--s-~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 231 ----VP--S-LLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred ----hh--h-hhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCC
Confidence 00 1 1122 2566789999999988899999999999999998743
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.00 E-value=4.7 Score=35.19 Aligned_cols=135 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred EEeecCCCEEEEEeCCCeEEEEEcc---------CCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEE
Q 019847 150 LKWSNEGNLLASGGDDNVVRIWERS---------KMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWN 220 (335)
Q Consensus 150 ~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d 220 (335)
+.|..| ..++--+.|..+.+-+++ .....+.+.....-.-.|..+..++.|..++.+|. +|.+.++=
T Consensus 56 ~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~---~Gi~vMeL 131 (741)
T KOG4460|consen 56 VFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGI---KGLMVMEL 131 (741)
T ss_pred hcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecC---CeeEEEEc
Q ss_pred CCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCC---CEEE
Q 019847 221 VQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDG---LTVA 297 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~ 297 (335)
.+..-.-..++.+.++..+...+-+..+++. ...-.+..++|+|+. ..|.
T Consensus 132 p~rwG~~s~~eDgk~~v~CRt~~i~~~~fts---------------------------s~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 132 PKRWGKNSEFEDGKSTVNCRTTPVAERFFTS---------------------------STSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred hhhcCccceecCCCceEEEEeecccceeecc---------------------------CCceeeeeccccCCccCCceEE
Q ss_pred EEeCCCcEEEEecCCCCC
Q 019847 298 TAGADETIRFWEAFGPSG 315 (335)
Q Consensus 298 ~~~~dg~v~iw~~~~~~~ 315 (335)
.-+.|..+|+|++.....
T Consensus 185 iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred EEecCcEEEEEecCCcch
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=92.89 E-value=4.6 Score=33.22 Aligned_cols=231 Identities=10% Similarity=-0.057 Sum_probs=107.8
Q ss_pred CCCEEEEEECCCcEEEEeCCC--ceeEeeecccccceeEeeecCCCCCEEE-EeeCCCcEEEEecccCCe----------
Q 019847 69 DAKTLAVGYMDSKLQLWDAET--SKLVRNLEGHHRRVATSSWNHWNGHILT-SGSKDKSIINHDVRVSNN---------- 135 (335)
Q Consensus 69 ~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~---------- 135 (335)
++++|+.|+.+| +.+.++.. ++..+.+ +...|+++...+ ..+.|+ .++....++.+++..-..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~-~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~ 87 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLE-ENNVLLMISGKKPQLYSHPLSALVEKKEALGSARL 87 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEh-hhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccc
Confidence 346899999998 55555654 3344333 456899999988 555444 444555699999843221
Q ss_pred ----eeEEeecCCCCEEEEEeecC-CCEEEEEeCCCeEEEEEccCCC-cccceeec----cCCCCCeeEEEecCCC-CcE
Q 019847 136 ----VTSCIKAHSGEVCGLKWSNE-GNLLASGGDDNVVRIWERSKMS-SSKSLHRF----TDHCGGVKALAWSPHQ-VNV 204 (335)
Q Consensus 136 ----~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~----~~~~~~v~~~~~~~~~-~~~ 204 (335)
......++............ ...++.+....+|.++...... .....+.+ .....++..+..+++. ..-
T Consensus 88 ~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (302)
T smart00036 88 VIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPG 167 (302)
T ss_pred cccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceE
Confidence 00112233333333333322 2233444556677776543221 11111110 0112233333333331 223
Q ss_pred EEEecCCCCCeEEEEECCC--CceEE----E-eecCC-cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee--
Q 019847 205 LATGGGREDGCIKIWNVQK--GTCIH----G-IDAKA-QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV-- 274 (335)
Q Consensus 205 ~~~~~g~~d~~i~i~d~~~--~~~~~----~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~-- 274 (335)
+..|+ ..+...++++.. ..... . ..... ...++..-+++.++++- +....+.|....+..
T Consensus 168 lcvG~--~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~--------~~~~v~Vn~~G~~~~r~ 237 (302)
T smart00036 168 ICIGS--DKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCY--------DEFGVFVNLYGKRRSRN 237 (302)
T ss_pred EEEEE--cCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEE--------CcEEEEEeCCCCccccc
Confidence 44443 222344455432 11000 0 00011 23333333445555543 455555554431111
Q ss_pred ecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 275 GELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 275 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
..+. -.....++++.. .+|+.-+. ..|.++++.++...+
T Consensus 238 ~~l~-w~~~p~~~~~~~--pyll~~~~-~~ievr~l~~~~l~q 276 (302)
T smart00036 238 PILH-WEFMPESFAYHS--PYLLAFHD-NGIEIRSIKTGELLQ 276 (302)
T ss_pred eEEE-cCCcccEEEEEC--CEEEEEcC-CcEEEEECCCCceEE
Confidence 1111 233456777764 47776654 559999999876543
|
Unpublished observations. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.85 E-value=3.3 Score=31.44 Aligned_cols=168 Identities=15% Similarity=0.190 Sum_probs=84.4
Q ss_pred CCCEEEEeeCCC--cEEEEecccCCeeeEEeec----CCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeec
Q 019847 112 NGHILTSGSKDK--SIINHDVRVSNNVTSCIKA----HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF 185 (335)
Q Consensus 112 ~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 185 (335)
++.++.+.+.-| .|++||+++++........ ....++.+ .+ .+.+..-.||.-..+|.++.+ .+..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~---gd-~~y~LTw~egvaf~~d~~t~~---~lg~~ 127 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL---GD-YFYQLTWKEGVAFKYDADTLE---ELGRF 127 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec---cc-eEEEEEeccceeEEEChHHhh---hhccc
Confidence 566777766544 7999999977764433222 11112211 12 222333568888889976633 33332
Q ss_pred cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec---CCc---EeEEEeCCCCceeeeeeeeeeecC
Q 019847 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA---KAQ---ICGLEWNRHHKEILSGHGFSASGD 259 (335)
Q Consensus 186 ~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 259 (335)
. .++.=..++ .+++.++.+.+ ...++.-|.++.....++.. ..+ ++.+.|- +|...+-. -.
T Consensus 128 ~-y~GeGWgLt--~d~~~LimsdG---satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANV------w~ 194 (262)
T COG3823 128 S-YEGEGWGLT--SDDKNLIMSDG---SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANV------WQ 194 (262)
T ss_pred c-cCCcceeee--cCCcceEeeCC---ceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEee------ee
Confidence 2 233334444 45666777543 45666667665544433321 112 2233332 22222211 12
Q ss_pred CCeEEEEECCCCceeecc------------cCCCCceeEeEEcCCC-CEEEEE
Q 019847 260 GNKLCLWKYPNMTKVGEL------------QSSNSRILDLSQSPDG-LTVATA 299 (335)
Q Consensus 260 ~~~i~i~d~~~~~~~~~~------------~~~~~~i~~~~~~~~~-~~l~~~ 299 (335)
+..|...|..+++.+..+ ..|..-.+.+++.|++ ++++||
T Consensus 195 t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 195 TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 334444455555544332 2344567889999987 566665
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=92.81 E-value=2.3 Score=29.65 Aligned_cols=115 Identities=13% Similarity=0.165 Sum_probs=70.2
Q ss_pred eeecCCCCCEEEEeeCCCcEEEEecccCCeee------EEeecCCCCEEEEEeec-----CCCEEEEEeCCCeEEEEEcc
Q 019847 106 SSWNHWNGHILTSGSKDKSIINHDVRVSNNVT------SCIKAHSGEVCGLKWSN-----EGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 106 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~------~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~iwd~~ 174 (335)
-+|.. ....|++++.-|.|.+++........ ..+......|++++-.+ +...|+.|+ ...+..||+.
T Consensus 4 GkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 45555 55678888899999999876432111 12233566788876544 345677776 5679999988
Q ss_pred CCCcccceeeccCCCCCeeEEEec---CCCCcEEEEecCCCCCeEEEEECCCCceEEE
Q 019847 175 KMSSSKSLHRFTDHCGGVKALAWS---PHQVNVLATGGGREDGCIKIWNVQKGTCIHG 229 (335)
Q Consensus 175 ~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~ 229 (335)
.... +.. +.-...++++.+- .....++.+|+ +..|.-||.+..+...+
T Consensus 82 ~N~d---~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGG---ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 NNSD---LFY-KEVPDGVNAIVIGKLGDIPSPLVIVGG---NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cCch---hhh-hhCccceeEEEEEecCCCCCcEEEECc---eEEEEEeCCCCcEEEEE
Confidence 6433 211 1234567776652 22335777775 77888888765554433
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.78 E-value=4.5 Score=39.37 Aligned_cols=142 Identities=15% Similarity=0.198 Sum_probs=83.8
Q ss_pred eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEE--------cCCCCEEEEEECCCcEEEEeCCC----ceeE---
Q 019847 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSW--------SHDAKTLAVGYMDSKLQLWDAET----SKLV--- 93 (335)
Q Consensus 29 ~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~~~~~dg~i~iw~~~~----~~~~--- 93 (335)
.+-.+.|+.+.+|+.+++...+. +.+-...|..+.. .|.=+++++-..--.|.++-+.- +..-
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~--~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~ 169 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAE--YDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFN 169 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCcccc--ccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccc
Confidence 34456799999999998554333 2333444555543 23223444433344566664431 1110
Q ss_pred --eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEec--ccCC----------------------eeeEEeecCCCCE
Q 019847 94 --RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDV--RVSN----------------------NVTSCIKAHSGEV 147 (335)
Q Consensus 94 --~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~--~~~~----------------------~~~~~~~~~~~~i 147 (335)
..+......|.++.... +|++|++|- ||. +|.+ .... .+.+....+..+|
T Consensus 170 ~~~~i~~dg~~V~~I~~t~-nGRIF~~G~-dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI 245 (1311)
T KOG1900|consen 170 TSFKISVDGVSVNCITYTE-NGRIFFAGR-DGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPI 245 (1311)
T ss_pred cceeeecCCceEEEEEecc-CCcEEEeec-CCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcc
Confidence 11222355788888665 777777655 554 4433 1100 0111112457799
Q ss_pred EEEEeecCCCEEEEEeCCCeEEEEEccCC
Q 019847 148 CGLKWSNEGNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 148 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 176 (335)
..+......+.+.+-++.|+|.+||+...
T Consensus 246 ~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 246 RQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eeeEeccccceeeeeccCceEEEEEccCC
Confidence 99999988889999999999999998763
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=92.66 E-value=7.8 Score=35.30 Aligned_cols=236 Identities=14% Similarity=0.079 Sum_probs=118.8
Q ss_pred ceEEEecCCeEEEEEec-CCceeeEEeecCCCCCceEEEEcCC---CCEEEEEECCCc-EEEEeCCCc-----------e
Q 019847 28 NVLAVALGPVLFLWKWE-NGKVKKLLQVPGEDDYPTSVSWSHD---AKTLAVGYMDSK-LQLWDAETS-----------K 91 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~-~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~-i~iw~~~~~-----------~ 91 (335)
.+-.|-+...|--|=+. +.+....+.++ .+..|.||..... .+..++|-.++. -++-.+.++ +
T Consensus 41 ~IdiGIS~S~ISsYIi~PTPKLiwsypi~-pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e 119 (670)
T PF10395_consen 41 QIDIGISGSAISSYIIKPTPKLIWSYPIS-PTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSE 119 (670)
T ss_pred eEEEEeccchhhheecCCCcceeEeeccC-cCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCcc
Confidence 44444455555555442 34443333333 3556777776442 235555534432 343333222 1
Q ss_pred --eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee--eEEeecCCC------CEEEEEeecCCCEEEE
Q 019847 92 --LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV--TSCIKAHSG------EVCGLKWSNEGNLLAS 161 (335)
Q Consensus 92 --~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--~~~~~~~~~------~i~~~~~~~~~~~l~~ 161 (335)
...+++ -...+..+.+.+ ++..+++...+|.|.+||....... ......+.. -|.....-....++++
T Consensus 120 ~~~~~~~k-l~~kvv~Ik~~~-~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~ 197 (670)
T PF10395_consen 120 TTNEFELK-LDDKVVGIKFSS-DGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLT 197 (670)
T ss_pred ccceEEEE-cccceEEEEEec-CCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEE
Confidence 111222 357889999997 8999999999999999999322110 111111222 1221111112344544
Q ss_pred EeC-C---CeEEEEEccCC-CcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC---
Q 019847 162 GGD-D---NVVRIWERSKM-SSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK--- 233 (335)
Q Consensus 162 ~~~-d---g~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--- 233 (335)
.+. + -..+++.+... .....+.....+........|.-....+..- .++.|.+|++.+.+..+++..+
T Consensus 198 v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l----~~~~i~~ysip~f~~~~tI~l~~ii 273 (670)
T PF10395_consen 198 VSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL----SKKTISSYSIPNFQIQKTISLPSII 273 (670)
T ss_pred EEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE----eCCEEEEEEcCCceEEEEEEechhh
Confidence 443 2 24667777211 1111121001111122222232222234443 4789999999988887777644
Q ss_pred ----CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc
Q 019847 234 ----AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ 278 (335)
Q Consensus 234 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 278 (335)
..+.++.--...+.+++ .++.|++.|+.-...+.++.
T Consensus 274 ~~~~~~~vSl~~~s~nRvLLs--------~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 274 DKESDDLVSLKPPSPNRVLLS--------VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred ccccccceEeecCCCCeEEEE--------cCCEEEEEeehhhhhhhhhh
Confidence 23444443333444443 38999999987665555544
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.57 E-value=9.6 Score=36.11 Aligned_cols=72 Identities=8% Similarity=-0.021 Sum_probs=48.0
Q ss_pred eeeeecCCceEEEecCCeEEEEEecCCceeeEEe-------e--cCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc
Q 019847 20 KVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQ-------V--PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~-------~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
.|++-.++.+++++.+|.+.+|.+.......... + .-+..+|..+...+.-.++.+- .|+.|.++++.+.
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPEL 98 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCcc
Confidence 4777788999999999999999987653211111 1 1124667777776655555554 3677888888766
Q ss_pred ee
Q 019847 91 KL 92 (335)
Q Consensus 91 ~~ 92 (335)
+.
T Consensus 99 ~~ 100 (877)
T KOG2063|consen 99 EP 100 (877)
T ss_pred cc
Confidence 55
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=92.56 E-value=7.4 Score=34.77 Aligned_cols=232 Identities=12% Similarity=0.081 Sum_probs=112.6
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCcee---EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC
Q 019847 67 SHDAKTLAVGYMDSKLQLWDAETSKL---VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH 143 (335)
Q Consensus 67 ~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 143 (335)
..++..++.+..+|.+....+..... +..+..-.....++.+....+.+|+.|+.-|.=.++.+.............
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 34677899999999999888765431 222221144556777764223488888877765555554333222222234
Q ss_pred CCCEEEEEeecC----CC------EEEEEe---CCCeEEEEEccCCCccc--ce--eeccCCCCCeeEEEecCC-CCcEE
Q 019847 144 SGEVCGLKWSNE----GN------LLASGG---DDNVVRIWERSKMSSSK--SL--HRFTDHCGGVKALAWSPH-QVNVL 205 (335)
Q Consensus 144 ~~~i~~~~~~~~----~~------~l~~~~---~dg~i~iwd~~~~~~~~--~~--~~~~~~~~~v~~~~~~~~-~~~~~ 205 (335)
-++|..+++.+. .. .|++++ .+|.+++..-. -... .. ..+.+ ...++.+..... +.+++
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~G--i~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv 375 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNG--IGIEGLELASSELPG-VTGIWTLKLSSSDHSYLV 375 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEES--BEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEecc--CCceeeeeeccCCCC-ceEEEEeeecCCCceEEE
Confidence 578888888531 11 455554 46788887521 1111 11 11111 233444544332 33444
Q ss_pred EEecCCCCCeEEEEECC---CCceEEEee-----cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecc
Q 019847 206 ATGGGREDGCIKIWNVQ---KGTCIHGID-----AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL 277 (335)
Q Consensus 206 ~~~~g~~d~~i~i~d~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 277 (335)
.+. ...-+++.+. ..+.+..++ ...+-..+....++..+-+. ...|++.+....+.....
T Consensus 376 ~S~----~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt--------~~~i~l~~~~~~~~~~~w 443 (504)
T PF10433_consen 376 LSF----PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVT--------PKGIRLIDLEDGKLTQEW 443 (504)
T ss_dssp EEE----SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEE--------SSEEEEEESSSTSEEEEE
T ss_pred EEc----CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEe--------cCeEEEEECCCCeEEEEE
Confidence 443 3445555553 233332221 11111122222233322222 567888888777776665
Q ss_pred cCC-CCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 019847 278 QSS-NSRILDLSQSPDGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 278 ~~~-~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
... ...|.+.+... .+++.+-.++.+..+.+.....
T Consensus 444 ~~~~~~~I~~a~~~~--~~v~v~~~~~~~~~~~~~~~~~ 480 (504)
T PF10433_consen 444 KPPAGSIIVAASIND--PQVLVALSGGELVYFELDDNKI 480 (504)
T ss_dssp E-TTS---SEEEESS--SEEEEEE-TTEEEEEEEETTEE
T ss_pred eCCCCCeEEEEEECC--CEEEEEEeCCcEEEEEEECCce
Confidence 433 33466555543 4666677788899998887654
|
... |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=92.53 E-value=4.3 Score=32.86 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=58.6
Q ss_pred CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE------CCCcEEEEeCCCceeEeeec----cccccee
Q 019847 35 GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY------MDSKLQLWDAETSKLVRNLE----GHHRRVA 104 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~----~~~~~v~ 104 (335)
...|.+||..+.+....- .+-.+.|+.+.|..+.+.++.|. ....+..||+.+......-. .-.+++.
T Consensus 15 C~~lC~yd~~~~qW~~~g--~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPG--NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCC--CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 457999999888764432 23467799999987777777764 34578899988765432222 1247888
Q ss_pred EeeecCCCCCEEE-Eee-CCC--cEEEEe
Q 019847 105 TSSWNHWNGHILT-SGS-KDK--SIINHD 129 (335)
Q Consensus 105 ~~~~~~~~~~~l~-~~~-~dg--~i~~~d 129 (335)
.+.+...+...+. .|. .+| .|..||
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEc
Confidence 8888654554444 443 333 345554
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.68 Score=24.25 Aligned_cols=30 Identities=27% Similarity=0.489 Sum_probs=21.7
Q ss_pred CCCCeeEEEecCCCCcEEEEecCCCC--CeEEEE
Q 019847 188 HCGGVKALAWSPHQVNVLATGGGRED--GCIKIW 219 (335)
Q Consensus 188 ~~~~v~~~~~~~~~~~~~~~~~g~~d--~~i~i~ 219 (335)
....-....|+|||+.++.++. .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~--~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSN--RNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEE--CT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEec--CCCCCCcCEE
Confidence 4456678899999999988876 55 666665
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=92.37 E-value=7.5 Score=34.37 Aligned_cols=136 Identities=11% Similarity=0.071 Sum_probs=64.9
Q ss_pred eEEEEEecCCceeeEEeecCCCC--CceEEEEcCCCCEEEEEECC-----CcEEEEeCCCceeEeeecc----cccceeE
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDD--YPTSVSWSHDAKTLAVGYMD-----SKLQLWDAETSKLVRNLEG----HHRRVAT 105 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~----~~~~v~~ 105 (335)
.+.+||+.+.+............ ........-++++.+.|+.+ ..+..||+.+.+....-.. ....-.+
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~ 273 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS 273 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence 47788887776543211100000 11111122255666777654 3588899887654332111 1111112
Q ss_pred eeecCCCCCEEEEeeCCC-----cEEEEecccCCeeeEEee----cCCCCEEEEEeecCCCEEEEEeCC----CeEEEEE
Q 019847 106 SSWNHWNGHILTSGSKDK-----SIINHDVRVSNNVTSCIK----AHSGEVCGLKWSNEGNLLASGGDD----NVVRIWE 172 (335)
Q Consensus 106 ~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd 172 (335)
+.. - ++.+++.|+.++ .+..||+.+......... ...... .++ .-++++++.++.+ ..+.+||
T Consensus 274 ~~~-~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD 349 (470)
T PLN02193 274 MAA-D-EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYD 349 (470)
T ss_pred EEE-E-CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEE
Confidence 222 2 667777777653 466778765432111000 001111 122 2256777777655 3588899
Q ss_pred ccCC
Q 019847 173 RSKM 176 (335)
Q Consensus 173 ~~~~ 176 (335)
+.+.
T Consensus 350 ~~t~ 353 (470)
T PLN02193 350 PVQD 353 (470)
T ss_pred CCCC
Confidence 7753
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=92.33 E-value=5.9 Score=33.11 Aligned_cols=105 Identities=16% Similarity=0.151 Sum_probs=55.2
Q ss_pred ceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe--eeEE----eecCCCCEEEEEeecC---CCEEEEEeC-C------
Q 019847 102 RVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN--VTSC----IKAHSGEVCGLKWSNE---GNLLASGGD-D------ 165 (335)
Q Consensus 102 ~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~----~~~~~~~i~~~~~~~~---~~~l~~~~~-d------ 165 (335)
..+.|+|.| +++++++ ...|.|++++.. +.. .... ..........++++|+ ..+|..... .
T Consensus 3 ~P~~~a~~p-dG~l~v~-e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLP-DGRLLVA-ERSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEET-TSCEEEE-ETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeC-CCcEEEE-eCCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 467899999 7777664 669999999932 322 1111 1234567899999994 233333332 1
Q ss_pred --CeEEEEEccCC----Ccccce-eeccC---CCCCeeEEEecCCCCcEEEEec
Q 019847 166 --NVVRIWERSKM----SSSKSL-HRFTD---HCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 166 --g~i~iwd~~~~----~~~~~~-~~~~~---~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
..|.-|..... ...+.+ ..... ....-..|.|.|++..++++|.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 23444544332 001111 11111 2334567999999965555554
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=92.30 E-value=1.2 Score=40.24 Aligned_cols=75 Identities=20% Similarity=0.306 Sum_probs=41.9
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCC----cccc-----------eeec--------cCCCCCeeEEEecC----CCCcEEE
Q 019847 154 NEGNLLASGGDDNVVRIWERSKMS----SSKS-----------LHRF--------TDHCGGVKALAWSP----HQVNVLA 206 (335)
Q Consensus 154 ~~~~~l~~~~~dg~i~iwd~~~~~----~~~~-----------~~~~--------~~~~~~v~~~~~~~----~~~~~~~ 206 (335)
++...++.+..||.+......... .... +..+ .........+++++ +...+++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 366788888889988888765411 0000 0000 01123455666666 4444555
Q ss_pred EecCCCCCeEEEEECCCCceEEEee
Q 019847 207 TGGGREDGCIKIWNVQKGTCIHGID 231 (335)
Q Consensus 207 ~~~g~~d~~i~i~d~~~~~~~~~~~ 231 (335)
.+ .|+.+|+||+.+++++....
T Consensus 236 l~---~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LS---RDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EE---TTSEEEEEETTTTCEEEEEE
T ss_pred Ee---CCCeEEEEECCCCeEEEEec
Confidence 54 79999999999999977654
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=92.29 E-value=10 Score=35.86 Aligned_cols=114 Identities=7% Similarity=0.100 Sum_probs=73.2
Q ss_pred CCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCC--cccceeeccCCC----------CCeeEEEecCCCCcEEEEecCC
Q 019847 145 GEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMS--SSKSLHRFTDHC----------GGVKALAWSPHQVNVLATGGGR 211 (335)
Q Consensus 145 ~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~g~ 211 (335)
.+...++|+| +.+.||+....|...||++.... ....+.....+. +.-..+.|.++...++++
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~---- 221 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC---- 221 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE----
Confidence 4677899999 66799999999999999992111 111111111111 223478898887777776
Q ss_pred CCCeEEEEECCCCceEE---EeecCCcEeEEEeCCC--CceeeeeeeeeeecCCCeEEEEECCC
Q 019847 212 EDGCIKIWNVQKGTCIH---GIDAKAQICGLEWNRH--HKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 212 ~d~~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
....+.++|+++..... .......|..+.-+|. +..++.. ...|...++..
T Consensus 222 ~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--------s~eiiw~~~~~ 277 (765)
T PF10214_consen 222 NRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--------SKEIIWLDVKS 277 (765)
T ss_pred cCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--------cCeEEEEEccC
Confidence 46889999999876533 2223456888888877 2222221 46777777665
|
These proteins are found in fungi. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=91.97 E-value=6.7 Score=32.93 Aligned_cols=94 Identities=13% Similarity=0.132 Sum_probs=47.8
Q ss_pred eEEEEEecCCceeeEEeecC-CCC---CceEEEEcCCCCEEEEEECC-----CcEEEEeCCCceeEe--eec----cccc
Q 019847 37 VLFLWKWENGKVKKLLQVPG-EDD---YPTSVSWSHDAKTLAVGYMD-----SKLQLWDAETSKLVR--NLE----GHHR 101 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~-~~~---~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~--~~~----~~~~ 101 (335)
.+.+||..+.+......... ... ....+.+ ++++++.|+.+ ..+.+||..+.+-.. .+. ....
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 58888888776544322211 010 1112222 56677777643 357889987754332 121 0111
Q ss_pred ceeEeeecCCCCCEEEEeeCC-----------CcEEEEecccCC
Q 019847 102 RVATSSWNHWNGHILTSGSKD-----------KSIINHDVRVSN 134 (335)
Q Consensus 102 ~v~~~~~~~~~~~~l~~~~~d-----------g~i~~~d~~~~~ 134 (335)
.-.+++.. ++.+++.|+.+ ..+.+||..+..
T Consensus 129 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 129 TFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred eeeEEEEE--CCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 11122222 56777777754 246778887554
|
|
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.87 E-value=13 Score=36.13 Aligned_cols=179 Identities=15% Similarity=0.114 Sum_probs=95.6
Q ss_pred CCeEEEEEecCCceeeEEeecCCCCCceEEEEcC---------CCCEEEEEEC---------CCcEEEEeCCC-----ce
Q 019847 35 GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH---------DAKTLAVGYM---------DSKLQLWDAET-----SK 91 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~l~~~~~---------dg~i~iw~~~~-----~~ 91 (335)
...|.+.+..+.+.+..+.++. ..-|++++... -..||++|.. .|.+.|+|+-. ++
T Consensus 1003 ~f~i~LisP~sw~vi~~iefq~-~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgk 1081 (1366)
T KOG1896|consen 1003 QFSIQLISPESWEVIDKIEFQE-NEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGK 1081 (1366)
T ss_pred cceeEEecCCccccccccccCc-cceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCC
Confidence 3456666666666655555532 23355555421 1358888753 48999999632 22
Q ss_pred e-----Eeee--cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC
Q 019847 92 L-----VRNL--EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD 164 (335)
Q Consensus 92 ~-----~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (335)
+ ++.+ +..+++|..++=- +|.++.+ ....|.+|+++....+.-.-. -.-++.-....-=.++++.|.-
T Consensus 1082 P~t~~KlKel~~eE~KGtVsavceV--~G~l~~~--~GqKI~v~~l~r~~~ligVaF-iD~~~yv~s~~~vknlIl~gDV 1156 (1366)
T KOG1896|consen 1082 PFTKNKLKELYIEEQKGTVSAVCEV--RGHLLSS--QGQKIIVRKLDRDSELIGVAF-IDLPLYVHSMKVVKNLILAGDV 1156 (1366)
T ss_pred CcccceeeeeehhhcccceEEEEEe--ccEEEEc--cCcEEEEEEeccCCcceeeEE-eccceeEEehhhhhhheehhhh
Confidence 2 2222 2345677766653 4554443 345789999954444332211 1222222222233567777777
Q ss_pred CCeEEEEEccCCCcccceeecc--CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC
Q 019847 165 DNVVRIWERSKMSSSKSLHRFT--DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ 222 (335)
Q Consensus 165 dg~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 222 (335)
-..|.+.-.... ...+..+. ...-.+.+..|--+|..+-...+ +.+++|++|-..
T Consensus 1157 ~ksisfl~fqee--p~rlsL~srd~~~l~v~s~EFLVdg~~L~flvs-Da~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1157 MKSISFLGFQEE--PYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVS-DADRNIHVYMYA 1213 (1366)
T ss_pred hhceEEEEEccC--ceEEEEeecCCchhhceeeeeEEcCCeeEEEEE-cCCCcEEEEEeC
Confidence 677777665432 12222222 12334778888877776544432 378999888543
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=91.65 E-value=7 Score=32.50 Aligned_cols=104 Identities=12% Similarity=0.111 Sum_probs=52.5
Q ss_pred CCCEEEEEECC-----CcEEEEeCCCcee---Eeeecccccce--eEeeecCCCCCEEEEeeC-----CCcEEEEecccC
Q 019847 69 DAKTLAVGYMD-----SKLQLWDAETSKL---VRNLEGHHRRV--ATSSWNHWNGHILTSGSK-----DKSIINHDVRVS 133 (335)
Q Consensus 69 ~~~~l~~~~~d-----g~i~iw~~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~ 133 (335)
++..++.|+.+ ..+..+|+.+.+. ...+..-..+. .+++.. ++.+.+.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 56666777654 3566777766543 12222111111 122222 6677777774 236788888765
Q ss_pred CeeeEE-eecCCCCEEEEEeecCCCEEEEEeCCC----eEEEEEccC
Q 019847 134 NNVTSC-IKAHSGEVCGLKWSNEGNLLASGGDDN----VVRIWERSK 175 (335)
Q Consensus 134 ~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~ 175 (335)
...... +. ........+...++++.+.|+.++ .+..||+++
T Consensus 150 ~W~~~~~~p-~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 150 EWFELPDFP-GEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CeeECCCCC-CCCCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 432111 11 111112222334667888887654 356788765
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=91.50 E-value=8.3 Score=33.10 Aligned_cols=145 Identities=12% Similarity=0.149 Sum_probs=80.9
Q ss_pred EEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc-
Q 019847 147 VCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT- 225 (335)
Q Consensus 147 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~- 225 (335)
...+..++++.+++.+.....++-||--. ...+.+. ......+..+.+.+++..++ ++ .+|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~-~~W~~~~--~~~~~~l~~v~~~~dg~l~l-~g---~~G~l~~-S~d~G~~ 312 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQ-PYWQPHN--RASARRIQNMGWRADGGLWL-LT---RGGGLYV-SKGTGLT 312 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCC-cceEEec--CCCccceeeeeEcCCCCEEE-Ee---CCceEEE-ecCCCCc
Confidence 34456677887777766433333444211 0012222 22345688999999986444 44 4666544 334443
Q ss_pred ----eEEEeec---CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc---CCCCceeEeEEcCCCCE
Q 019847 226 ----CIHGIDA---KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ---SSNSRILDLSQSPDGLT 295 (335)
Q Consensus 226 ----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~ 295 (335)
....... ...+..+.+.+++..+++| ..|.+..-. ..++.-...+ .-....+.+.|.++++.
T Consensus 313 ~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-------~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g 384 (398)
T PLN00033 313 EEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-------GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKG 384 (398)
T ss_pred ccccceeecccCCCCcceEEEEEcCCCcEEEEE-------CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCce
Confidence 2233322 2358889999998888876 355555443 4444322222 22356789999887765
Q ss_pred EEEEeCCCcEEEE
Q 019847 296 VATAGADETIRFW 308 (335)
Q Consensus 296 l~~~~~dg~v~iw 308 (335)
+++ +.+|.|.-|
T Consensus 385 ~~~-G~~G~il~~ 396 (398)
T PLN00033 385 FVL-GNDGVLLRY 396 (398)
T ss_pred EEE-eCCcEEEEe
Confidence 554 467877654
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.34 E-value=8.7 Score=33.01 Aligned_cols=160 Identities=16% Similarity=0.100 Sum_probs=84.6
Q ss_pred CCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCC----Cee-EEEecCCCCcEEEEecCCCCCeEEEE
Q 019847 145 GEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCG----GVK-ALAWSPHQVNVLATGGGREDGCIKIW 219 (335)
Q Consensus 145 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~~~~~~~g~~d~~i~i~ 219 (335)
..+..+-..|||+.+..-+. ..+.++++.+.... ..+......+ .|+ .+..-..+..+++.. .||.|.-|
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~-~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~---~dG~vsQW 295 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQ-IRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVH---EDGLVSQW 295 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccc-hhhhhhcCCCchHHHHHHHHHHHhCceeEEEEc---CCCceeee
Confidence 45566777899998877664 67888887643211 1111111111 122 122223344455533 68888776
Q ss_pred -ECCCC-ce----EEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCC
Q 019847 220 -NVQKG-TC----IHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 220 -d~~~~-~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
|.+.+ .+ ++.++. +.++..+.-..+.+-+ .+-...|++..+.....+.+-.-..- ..+.-+++||+
T Consensus 296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF------~~l~~~G~L~~f~st~~~~lL~~~~~-~~~~~~~~Sp~ 368 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGF------YSLYRNGTLQSFYSTSEKLLLFERAY-QAPQLVAMSPN 368 (733)
T ss_pred eeeecCCCCcceeeeccccCcccceeeccccccceE------EEEcCCCceeeeecccCcceehhhhh-cCcceeeeCcc
Confidence 44432 21 112221 1223222222222222 22256777777765544443222222 24667899999
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 293 GLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 293 ~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
+.+|++- +.|.++++.+++...+.
T Consensus 369 ~~~Ll~e-~~gki~~~~l~Nr~Pei 392 (733)
T COG4590 369 QAYLLSE-DQGKIRLAQLENRNPEI 392 (733)
T ss_pred cchheee-cCCceEEEEecCCCCCc
Confidence 9999876 45889999999876554
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=91.19 E-value=2.8 Score=27.06 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=31.1
Q ss_pred CCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeee
Q 019847 211 REDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 211 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (335)
..+|.+.-||..+++....++.=.-.+.++.++++..++.+
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence 36789999999998876666666678899999999988775
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=90.96 E-value=8.4 Score=33.47 Aligned_cols=31 Identities=13% Similarity=0.305 Sum_probs=25.3
Q ss_pred CCEEEEEeecCCCEEEEEeCCCeEEEEEccC
Q 019847 145 GEVCGLKWSNEGNLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 145 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 175 (335)
..|.+++..+..+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999975
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=90.86 E-value=9.7 Score=32.71 Aligned_cols=144 Identities=10% Similarity=0.182 Sum_probs=78.6
Q ss_pred eeecCCCCCEEEEeeCCCcEEEEecccCCee-eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCccc--ce
Q 019847 106 SSWNHWNGHILTSGSKDKSIINHDVRVSNNV-TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSK--SL 182 (335)
Q Consensus 106 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~ 182 (335)
+...+ ++.+++.+..-..++-||- +... ..........++.+.+.+++..++++ .+|.+..=+ ..+.... .+
T Consensus 244 v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~-d~G~~~~~~~f 318 (398)
T PLN00033 244 VNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSK-GTGLTEEDFDF 318 (398)
T ss_pred EEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEec-CCCCcccccce
Confidence 34444 5555555544333333442 2111 11222345678899999998877766 466654422 2221111 12
Q ss_pred eeccC--CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee----cCCcEeEEEeCCCCceeeeeeeeee
Q 019847 183 HRFTD--HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID----AKAQICGLEWNRHHKEILSGHGFSA 256 (335)
Q Consensus 183 ~~~~~--~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (335)
..... ....+..+.|.+++ .+++++ ..|.+.... ..|+.-...+ ...+...+.|.++++.++.|
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~-~~~a~G---~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G----- 388 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKK-EAWAAG---GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG----- 388 (398)
T ss_pred eecccCCCCcceEEEEEcCCC-cEEEEE---CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-----
Confidence 22211 22348889999877 477776 577666653 4454433322 23568899998888877775
Q ss_pred ecCCCeEEEE
Q 019847 257 SGDGNKLCLW 266 (335)
Q Consensus 257 ~~~~~~i~i~ 266 (335)
.+|.|.-|
T Consensus 389 --~~G~il~~ 396 (398)
T PLN00033 389 --NDGVLLRY 396 (398)
T ss_pred --CCcEEEEe
Confidence 46666544
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.80 E-value=5.9 Score=30.14 Aligned_cols=181 Identities=14% Similarity=0.140 Sum_probs=92.7
Q ss_pred ceeeeecCCceEEEe---cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEE-EEECCCcEEEEeCCCceeEe
Q 019847 19 SKVIDWGRNNVLAVA---LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLA-VGYMDSKLQLWDAETSKLVR 94 (335)
Q Consensus 19 ~~~~~~~~~~~~~~~---~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~ 94 (335)
...+...++.++... ....|++||+.+++......+.. ..+..=-...-+.++. ..-.+|.-..+|..+.+.+.
T Consensus 48 TQGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg 125 (262)
T COG3823 48 TQGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG 125 (262)
T ss_pred hcceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCC--ccccccceeeccceEEEEEeccceeEEEChHHhhhhc
Confidence 334445555555443 35689999999998766655541 1222211222233332 23368888999998888777
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeec-CC---CCEEEEEeecCCCEEEEEe-------
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA-HS---GEVCGLKWSNEGNLLASGG------- 163 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~---~~i~~~~~~~~~~~l~~~~------- 163 (335)
.+. -++.=+.++. ++..|+.+....+++.-|.++-......... .. ..++.+.|- +|...|-.-
T Consensus 126 ~~~-y~GeGWgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~r 200 (262)
T COG3823 126 RFS-YEGEGWGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIAR 200 (262)
T ss_pred ccc-cCCcceeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEE
Confidence 665 3344455555 4555666666667777776543321111100 11 112222221 222222221
Q ss_pred ---CCCeEEEE-EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEe
Q 019847 164 ---DDNVVRIW-ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 164 ---~dg~i~iw-d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
..|.|.-| |+... ...+..-..+..-.+.+++.|++..++.+|
T Consensus 201 I~p~sGrV~~widlS~L--~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 201 IDPDSGRVVAWIDLSGL--LKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EcCCCCcEEEEEEccCC--chhcCccccccccccceeecCcCCeEEEec
Confidence 22333322 33221 111222233445578899999988888876
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=90.73 E-value=9.1 Score=32.17 Aligned_cols=94 Identities=15% Similarity=0.171 Sum_probs=44.0
Q ss_pred cCCceEEEec--CCeEEEEEec--CCceeeEEeecC-CCCCceEEEEcCCCCEEEEEECC-----------CcEEEEeCC
Q 019847 25 GRNNVLAVAL--GPVLFLWKWE--NGKVKKLLQVPG-EDDYPTSVSWSHDAKTLAVGYMD-----------SKLQLWDAE 88 (335)
Q Consensus 25 ~~~~~~~~~~--~~~i~vw~~~--~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iw~~~ 88 (335)
-++.+++++. ...+..+|++ +.+..+...++. ....... ..-+++..+.|+.+ ..+..||..
T Consensus 16 ~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~--~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~ 93 (346)
T TIGR03547 16 IGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVA--AAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPK 93 (346)
T ss_pred ECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceE--EEECCEEEEEeCCCCCCCCCcceecccEEEEECC
Confidence 3455555432 2466777763 233333333321 1111122 22367777777653 247778887
Q ss_pred CceeEeeecccccc---eeEeeecCCCCCEEEEeeCC
Q 019847 89 TSKLVRNLEGHHRR---VATSSWNHWNGHILTSGSKD 122 (335)
Q Consensus 89 ~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~d 122 (335)
+.+-...-...... ...+.. - ++++.+.|+.+
T Consensus 94 ~~~W~~~~~~~p~~~~~~~~~~~-~-~g~IYviGG~~ 128 (346)
T TIGR03547 94 KNSWQKLDTRSPVGLLGASGFSL-H-NGQAYFTGGVN 128 (346)
T ss_pred CCEEecCCCCCCCcccceeEEEE-e-CCEEEEEcCcC
Confidence 66543321111111 111211 2 77888888764
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.67 E-value=5.8 Score=36.72 Aligned_cols=146 Identities=13% Similarity=0.149 Sum_probs=86.9
Q ss_pred CEEEEEECCCcEEEEeCCCcee----EeeecccccceeEeeecCCCCCEEEEeeCCCcEEE--------EecccCCeeeE
Q 019847 71 KTLAVGYMDSKLQLWDAETSKL----VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIIN--------HDVRVSNNVTS 138 (335)
Q Consensus 71 ~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~--------~d~~~~~~~~~ 138 (335)
..+..|+.++.+.++.-..+.. ..........+.++.+++ ..+..|.-||++-. ||.+ ...
T Consensus 548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss---~Slgagl~dgt~a~y~rap~gSwd~e----p~~ 620 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSS---GSLGAGLIDGTLAVYGRAPSGSWDGE----PNI 620 (925)
T ss_pred CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccc---cccccCccCCccccccCCCCCCCCCC----Ccc
Confidence 3577888999999997652221 111223345666666653 34555555665544 4433 122
Q ss_pred EeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEE
Q 019847 139 CIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKI 218 (335)
Q Consensus 139 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i 218 (335)
.+.....++.+.++..| ++.++.+|.|.++...+............|...|+++....++- .++.. ....+++
T Consensus 621 ~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gV-wvafa---sG~~~rl 693 (925)
T KOG3522|consen 621 SIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGV-WVAFA---SGDEERL 693 (925)
T ss_pred ccccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCce-EEEEc---CCCEEEE
Confidence 22334567888887755 66677899999999776544333444445667799999887773 33333 3456666
Q ss_pred EECCCCceEEEe
Q 019847 219 WNVQKGTCIHGI 230 (335)
Q Consensus 219 ~d~~~~~~~~~~ 230 (335)
++.++-.....+
T Consensus 694 fhtetl~hlqd~ 705 (925)
T KOG3522|consen 694 FHTETLWHLQDS 705 (925)
T ss_pred ecccccCCcccc
Confidence 666554444433
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=90.45 E-value=10 Score=32.35 Aligned_cols=95 Identities=17% Similarity=0.199 Sum_probs=43.1
Q ss_pred CCceEE-Eec-CCeEEEEEecC--CceeeEEeecCCCCCceEEEEcCCCCEEEEEECC-----------CcEEEEeCCCc
Q 019847 26 RNNVLA-VAL-GPVLFLWKWEN--GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD-----------SKLQLWDAETS 90 (335)
Q Consensus 26 ~~~~~~-~~~-~~~i~vw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iw~~~~~ 90 (335)
++.+++ ++. +..+.++|++. .+......++.. .........-+++..+.|+.+ ..+..||..+.
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~-~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n 116 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGG-PREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN 116 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCC-CcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence 444444 443 35667777753 333332222211 111111222356677777643 24778888765
Q ss_pred eeEeeecccccce--eEeeecCCCCCEEEEeeCC
Q 019847 91 KLVRNLEGHHRRV--ATSSWNHWNGHILTSGSKD 122 (335)
Q Consensus 91 ~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~d 122 (335)
+-...-....... .+..... ++.+.+.|+.+
T Consensus 117 ~W~~~~~~~p~~~~~~~~~~~~-~~~IYv~GG~~ 149 (376)
T PRK14131 117 SWQKLDTRSPVGLAGHVAVSLH-NGKAYITGGVN 149 (376)
T ss_pred EEEeCCCCCCCcccceEEEEee-CCEEEEECCCC
Confidence 5333211111111 1111112 67888888754
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=90.26 E-value=11 Score=32.17 Aligned_cols=203 Identities=18% Similarity=0.111 Sum_probs=101.3
Q ss_pred eecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccc-c
Q 019847 23 DWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH-R 101 (335)
Q Consensus 23 ~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~ 101 (335)
...++.+++...+|.|.-.|.++++.+-...+......+..-.+..+|+ ++.++.+|.++.+|..+|+.+....... .
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~ 143 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSP 143 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCe
Confidence 3445667777788888888888887543222221111222222333665 7888889999999998999888777554 1
Q ss_pred ceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC--CCCEEEEEeecCCCEEEEEeC--CCeEEEEEccCCC
Q 019847 102 RVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH--SGEVCGLKWSNEGNLLASGGD--DNVVRIWERSKMS 177 (335)
Q Consensus 102 ~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~ 177 (335)
.+..-... ....+..++.++.+...|..++...-.....- ...+..-....++ .+..+.. ++.+.-.|.+.+.
T Consensus 144 ~~~~~~v~--~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 144 YYASPPVV--GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred EEecCcEE--cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCc
Confidence 11111111 23344444467888777777665433321110 1111100001122 3444444 4555556654433
Q ss_pred ccccee--eccCCCC-----CeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC
Q 019847 178 SSKSLH--RFTDHCG-----GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK 233 (335)
Q Consensus 178 ~~~~~~--~~~~~~~-----~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~ 233 (335)
..-..+ ...+... .+..-...-++ .+...+ .++.+...|..+++.+-.++..
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~---~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGS---YGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEECC-cEEEEe---cCCeEEEEEcCCCceEEEEecc
Confidence 211110 0001100 00000000111 122222 5788999999999998888764
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=89.61 E-value=12 Score=31.77 Aligned_cols=195 Identities=13% Similarity=0.165 Sum_probs=107.3
Q ss_pred CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEc----CCCCE--EEEEE-CC---CcEEEEeCC--CceeEe
Q 019847 27 NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS----HDAKT--LAVGY-MD---SKLQLWDAE--TSKLVR 94 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~-~d---g~i~iw~~~--~~~~~~ 94 (335)
..++....++-+.+||++..+. +.+. ...++.+..- -.|+. |++++ .+ ..|++|.+. ++. +.
T Consensus 69 SlIigTdK~~GL~VYdL~Gk~l-q~~~----~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~ 142 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDGKEL-QSLP----VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LT 142 (381)
T ss_dssp -EEEEEETTTEEEEEETTS-EE-EEE-----SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EE
T ss_pred ceEEEEeCCCCEEEEcCCCcEE-Eeec----CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ce
Confidence 3466666888999999976654 3222 1234433332 13433 44444 22 469999775 343 33
Q ss_pred eecc-------cccceeEeee--cCCCCC-EEEEeeCCCcEEEEecccCC------eeeEEeecCCCCEEEEEeecCCCE
Q 019847 95 NLEG-------HHRRVATSSW--NHWNGH-ILTSGSKDKSIINHDVRVSN------NVTSCIKAHSGEVCGLKWSNEGNL 158 (335)
Q Consensus 95 ~~~~-------~~~~v~~~~~--~~~~~~-~l~~~~~dg~i~~~d~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~ 158 (335)
.+.. ....+..++. ++.++. +++....+|.+..|.+.... .+.+.+. -...+..+........
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-~~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK-VGSQPEGCVVDDETGR 221 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec-CCCcceEEEEecccCC
Confidence 3321 1123555665 343443 66677889999988886321 2334443 3457888888888889
Q ss_pred EEEEeCCCeEEEEEccCCCc--ccceeeccC--CCCCeeEEEec--CCC-CcEEEEecCCCCCeEEEEECCCC-ceEEEe
Q 019847 159 LASGGDDNVVRIWERSKMSS--SKSLHRFTD--HCGGVKALAWS--PHQ-VNVLATGGGREDGCIKIWNVQKG-TCIHGI 230 (335)
Q Consensus 159 l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~--~~~~v~~~~~~--~~~-~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~ 230 (335)
|..+-++.-|.-|+.+.... ...+....+ ....|..++.- +++ .+|+++.- -+++..+|+.+.. ..+..+
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ--G~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ--GDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG--GGTEEEEEESSTT--EEEEE
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC--CCCeEEEEecCCCCcccceE
Confidence 99999998888888763221 222322222 34567777764 333 36777765 6789999997642 334443
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.58 E-value=12 Score=31.87 Aligned_cols=176 Identities=15% Similarity=0.211 Sum_probs=95.5
Q ss_pred cEEEEeCCCceeEeeecc--cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE--Ee--ecCCCCEEEEEeec
Q 019847 81 KLQLWDAETSKLVRNLEG--HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS--CI--KAHSGEVCGLKWSN 154 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~--~~~~~~i~~~~~~~ 154 (335)
.++|.| ++...+..+++ ....|.++.|.. +--++++--.-.-+.+.|+.+.+.+.. .+ .+.+. -.+|
T Consensus 407 ~vYilD-e~lnvvGkltGl~~gERIYAvRf~g-dv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~-----YLHp 479 (603)
T COG4880 407 AVYILD-ENLNVVGKLTGLAPGERIYAVRFVG-DVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSE-----YLHP 479 (603)
T ss_pred eeEEEc-CCCcEEEEEeccCCCceEEEEEEeC-ceEEEEEEeccCceEEEEcCCCCCCceeEEEecCCchh-----hccc
Confidence 456665 34556666654 456899999976 666667766667788889876654321 11 12111 2244
Q ss_pred --CCCEEEEEeCCCe--EEEEEccCCCcccceeeccCC--CC----CeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC
Q 019847 155 --EGNLLASGGDDNV--VRIWERSKMSSSKSLHRFTDH--CG----GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224 (335)
Q Consensus 155 --~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~--~~----~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 224 (335)
++++|-.|-.+|. |.+||+.+....+......-. -+ .-.+..|.|....++.-+. ..|. ++.++.|
T Consensus 480 igen~~lGvG~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay--~~gy--if~iedg 555 (603)
T COG4880 480 IGENRLLGVGAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAY--LGGY--IFFIEDG 555 (603)
T ss_pred cCCCcEEEeecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEeccc--CccE--EEEEecC
Confidence 5667778877775 557888776554443322110 01 1124556666554444443 4444 4444555
Q ss_pred ceEE-EeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeec
Q 019847 225 TCIH-GIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE 276 (335)
Q Consensus 225 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 276 (335)
..+. .-++..+....-|..+.-+++. ...+.++|-.+.+.+..
T Consensus 556 ~kl~k~~e~k~na~RA~fi~dylY~vg---------~~ev~~ldenswe~Vge 599 (603)
T COG4880 556 SKLRKRAERKLNADRAFFIKDYLYLVG---------GNEVWKLDENSWEVVGE 599 (603)
T ss_pred ceeeehhhhcccceeeEEecceEEEec---------cceeEEeccchHhhhhh
Confidence 3322 2233444444555555555543 35677777666655443
|
|
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=89.33 E-value=20 Score=33.97 Aligned_cols=187 Identities=10% Similarity=0.094 Sum_probs=103.3
Q ss_pred CEEEEeeCCCcEEEEecccCCeeeEEe-------ecCCCCEEEEEe--ecCCCEEEEEeCC---CeEEEEEccCCCc---
Q 019847 114 HILTSGSKDKSIINHDVRVSNNVTSCI-------KAHSGEVCGLKW--SNEGNLLASGGDD---NVVRIWERSKMSS--- 178 (335)
Q Consensus 114 ~~l~~~~~dg~i~~~d~~~~~~~~~~~-------~~~~~~i~~~~~--~~~~~~l~~~~~d---g~i~iwd~~~~~~--- 178 (335)
.-+++-..+|.+++|=.+...+....- ..-...++..++ ..+|+.++.++.+ +.|++|.+.-.-.
T Consensus 63 ~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~ 142 (753)
T PF11635_consen 63 SACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKP 142 (753)
T ss_pred eEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcC
Confidence 456666788999999874333322221 113344554444 4567666655555 7788876431100
Q ss_pred ----c---ccee--ec-----c--C-----------CCCCeeEEEecC------CCCcEEEEecCCC--CCeEEEEECCC
Q 019847 179 ----S---KSLH--RF-----T--D-----------HCGGVKALAWSP------HQVNVLATGGGRE--DGCIKIWNVQK 223 (335)
Q Consensus 179 ----~---~~~~--~~-----~--~-----------~~~~v~~~~~~~------~~~~~~~~~~g~~--d~~i~i~d~~~ 223 (335)
. ..+. .. . . .-..++.+.|-+ ..+.++++.+... ...|.-|.++.
T Consensus 143 ~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~ 222 (753)
T PF11635_consen 143 QQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE 222 (753)
T ss_pred ccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence 0 0000 00 0 0 112455666654 2334555543222 45799998865
Q ss_pred Cc-eEE--------------------------EeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeec
Q 019847 224 GT-CIH--------------------------GIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE 276 (335)
Q Consensus 224 ~~-~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 276 (335)
.. .++ .+..+..|.++....-+..++.. -.||+|.++|-.+.+.+..
T Consensus 223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~------~~DGsI~~~dr~t~~~~~~ 296 (753)
T PF11635_consen 223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFA------FSDGSIEFRDRNTMKELNE 296 (753)
T ss_pred cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEE------EcCCeEEEEecCcchhhcc
Confidence 32 111 01123346666666666655544 5699999999888755544
Q ss_pred c----cC---------------CCCceeEeEEcCCCCEEEEEeCCCcEE
Q 019847 277 L----QS---------------SNSRILDLSQSPDGLTVATAGADETIR 306 (335)
Q Consensus 277 ~----~~---------------~~~~i~~~~~~~~~~~l~~~~~dg~v~ 306 (335)
. .. +...+..++|||.+..++.-..+|.+.
T Consensus 297 ~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 297 TRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred cccccCCccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 3 11 011334588999999999999999966
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=89.12 E-value=13 Score=31.61 Aligned_cols=203 Identities=14% Similarity=0.078 Sum_probs=101.5
Q ss_pred CCCEEEEEECCCcEEEEeCCCceeEeeecccc--cceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCC-
Q 019847 69 DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH--RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSG- 145 (335)
Q Consensus 69 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~- 145 (335)
++ .+.++..+|.|.-.|.++++.+....... ..+..-.... +++ ++.++.++.+..+|.+++...-.... ...
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~-~~~~ 143 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNV-GGSP 143 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEec-CCCe
Confidence 44 45566789999999999988665433221 2232323332 344 77888899888888866665433221 220
Q ss_pred CEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCC--CCeEEEEECCC
Q 019847 146 EVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE--DGCIKIWNVQK 223 (335)
Q Consensus 146 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~--d~~i~i~d~~~ 223 (335)
.+..-..-.++ .+..++.++.+.-.|..++...-.......-...+..-....++ .+++.. . ++.+.-.|.++
T Consensus 144 ~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~---~~~~~~~~a~~~~~ 218 (370)
T COG1520 144 YYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGS---DGYDGILYALNAED 218 (370)
T ss_pred EEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEec---CCCcceEEEEEccC
Confidence 11111111132 33333356777777655432211111100000001100012222 233322 3 55788888888
Q ss_pred CceEEEeecCCcEeEE----EeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC
Q 019847 224 GTCIHGIDAKAQICGL----EWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 224 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 280 (335)
|......+....+..- .-.-.+..+.++.....++.++.+.-.|..+++.+-.+...
T Consensus 219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 8887765432222111 11122333333333344566777888888888888776653
|
|
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=89.06 E-value=21 Score=33.84 Aligned_cols=188 Identities=16% Similarity=0.167 Sum_probs=103.4
Q ss_pred CceEEEecCCeEEEEEec-CCceeeEE--e---ecCCCCCceEEEEc--CCCCEEEEEECC---CcEEEEeCC--Cc---
Q 019847 27 NNVLAVALGPVLFLWKWE-NGKVKKLL--Q---VPGEDDYPTSVSWS--HDAKTLAVGYMD---SKLQLWDAE--TS--- 90 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~-~~~~~~~~--~---~~~~~~~v~~~~~~--~~~~~l~~~~~d---g~i~iw~~~--~~--- 90 (335)
..++++...|.+++|=.+ +++..... . +..-...|+..++. .+|+.++.++.+ +.|++|.+. -+
T Consensus 63 ~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~ 142 (753)
T PF11635_consen 63 SACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKP 142 (753)
T ss_pred eEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcC
Confidence 358888999999999873 33332222 1 11234556665555 566666555544 788888642 01
Q ss_pred -----e--eEeeec----c-----------------cccceeEeeecC------CCCCEEEEeeC----CCcEEEEeccc
Q 019847 91 -----K--LVRNLE----G-----------------HHRRVATSSWNH------WNGHILTSGSK----DKSIINHDVRV 132 (335)
Q Consensus 91 -----~--~~~~~~----~-----------------~~~~v~~~~~~~------~~~~~l~~~~~----dg~i~~~d~~~ 132 (335)
+ +.-.+. . .-..++.+.|.+ ....++++.+. ...|.-|.++.
T Consensus 143 ~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~ 222 (753)
T PF11635_consen 143 QQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE 222 (753)
T ss_pred ccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence 0 000000 0 112566666654 12345555443 34688998865
Q ss_pred CCeeeEEe-------------------------ecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccce-----
Q 019847 133 SNNVTSCI-------------------------KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL----- 182 (335)
Q Consensus 133 ~~~~~~~~-------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----- 182 (335)
....+... ....+.|.++....-+.+++..-.||+|.++|-.+.+.....
T Consensus 223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~ 302 (753)
T PF11635_consen 223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGE 302 (753)
T ss_pred cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccC
Confidence 43211110 012355677777777788999999999999997654221111
Q ss_pred -----eecc------CCCCCeeEEEecCCCCcEEEEecCCCCCeEE
Q 019847 183 -----HRFT------DHCGGVKALAWSPHQVNVLATGGGREDGCIK 217 (335)
Q Consensus 183 -----~~~~------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (335)
..+. ..-.++..++|||.+..++... .+|.+.
T Consensus 303 ~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~---~~~~~~ 345 (753)
T PF11635_consen 303 PPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID---EDGKTK 345 (753)
T ss_pred CccccccccccccccccCCCCceEEECcccceEEEEe---cCCCce
Confidence 0000 0111344578999887666655 466654
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=88.95 E-value=21 Score=33.86 Aligned_cols=161 Identities=11% Similarity=0.108 Sum_probs=99.8
Q ss_pred CCCCceEEEEc---C----CCCEEEEEECCCcEEEEeCCCc---------------eeEeeecc---cccceeEeeecCC
Q 019847 57 EDDYPTSVSWS---H----DAKTLAVGYMDSKLQLWDAETS---------------KLVRNLEG---HHRRVATSSWNHW 111 (335)
Q Consensus 57 ~~~~v~~~~~~---~----~~~~l~~~~~dg~i~iw~~~~~---------------~~~~~~~~---~~~~v~~~~~~~~ 111 (335)
-..+|..|+|. . ..++|++= ....+.|+...-. .++..+.. ...+...++|+|.
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 46789999998 2 12355544 4557788772211 22333331 2357889999998
Q ss_pred CCCEEEEeeCCCcEEEEecccCC----eeeEEeecCCC----------CEEEEEeecCCCEEEEEeCCCeEEEEEccCCC
Q 019847 112 NGHILTSGSKDKSIINHDVRVSN----NVTSCIKAHSG----------EVCGLKWSNEGNLLASGGDDNVVRIWERSKMS 177 (335)
Q Consensus 112 ~~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~----------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 177 (335)
+...||.....|.-.+|++.... ........+.+ .-..+.|.++.+.|+.++ ...+.++|++...
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEECCCCC
Confidence 99999999999999999992111 11111111222 234788988888888877 4578999988654
Q ss_pred cccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC
Q 019847 178 SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 178 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 223 (335)
....+. .......|..+.-+|.....+..- ....|...++..
T Consensus 236 ~~~~l~-~~~~~~~IlDv~~~~~~~~~~FiL---Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 236 QTEYLV-TAKTWSWILDVKRSPDNPSHVFIL---TSKEIIWLDVKS 277 (765)
T ss_pred ccchhc-cCCChhheeeEEecCCccceEEEE---ecCeEEEEEccC
Confidence 423222 223456788888888733222222 257788888776
|
These proteins are found in fungi. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=88.29 E-value=2.4 Score=22.09 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=19.4
Q ss_pred CCCCceEEEEcCCCCEEEEEEC-C--CcEEEE
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYM-D--SKLQLW 85 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~-d--g~i~iw 85 (335)
....-....|+|||++|+..+. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445678899999999887664 3 555554
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=88.20 E-value=21 Score=32.77 Aligned_cols=167 Identities=15% Similarity=0.174 Sum_probs=86.7
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEe--eecc-cccceeEeeecC-----CCCCEEEEeeC-CC---cE
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR--NLEG-HHRRVATSSWNH-----WNGHILTSGSK-DK---SI 125 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~-~~~~v~~~~~~~-----~~~~~l~~~~~-dg---~i 125 (335)
.+.|..+.|.++++.+++...+|.|.+||...+.... .++. +...+.--.|.+ ....++++-+. ++ ..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 5678999999999999999999999999993322211 2221 111111112222 12345544444 32 46
Q ss_pred EEEecccCC-eeeEEe--ecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeec--cCCC-CCeeEEEec
Q 019847 126 INHDVRVSN-NVTSCI--KAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRF--TDHC-GGVKALAWS 198 (335)
Q Consensus 126 ~~~d~~~~~-~~~~~~--~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~-~~v~~~~~~ 198 (335)
+++.+.... .+...- ..+........|.- +|.+..- .++.|.+|++-..+..+.+... -... ..+.++. .
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~-~ 285 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK-P 285 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee-c
Confidence 677772111 111110 11222222233333 4544333 5778999998665433332221 1111 2333333 2
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceEEEee
Q 019847 199 PHQVNVLATGGGREDGCIKIWNVQKGTCIHGID 231 (335)
Q Consensus 199 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 231 (335)
|...+++.+ .++.|++.|+.-...+..++
T Consensus 286 ~s~nRvLLs----~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 286 PSPNRVLLS----VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCCeEEEE----cCCEEEEEeehhhhhhhhhh
Confidence 333345555 47999999998776666655
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 335 | ||||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 9e-80 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 1e-79 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 2e-79 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 1e-63 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 4e-16 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 6e-16 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 7e-04 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 6e-16 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 7e-04 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 6e-16 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 7e-04 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 7e-16 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 8e-04 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 7e-16 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 8e-04 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 7e-16 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 8e-04 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 7e-16 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 8e-04 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 7e-16 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 8e-04 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 8e-16 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 8e-16 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 8e-16 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 8e-04 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 8e-16 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 8e-04 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-15 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 1e-15 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-15 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-15 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 8e-04 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 5e-15 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 8e-04 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 8e-15 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 4e-10 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 3e-11 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 3e-11 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 8e-11 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-10 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-10 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 3e-10 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 9e-10 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 1e-09 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-09 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-09 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-09 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 3e-09 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 6e-06 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 8e-09 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 9e-09 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 1e-08 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 1e-08 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 2e-08 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 2e-08 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 7e-08 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 8e-08 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 2e-07 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 2e-07 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 2e-07 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 2e-07 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 3e-07 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 3e-07 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-07 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 3e-07 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-07 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 7e-07 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 2e-06 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 8e-07 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 1e-06 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 2e-06 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-06 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-06 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-06 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 4e-06 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 5e-06 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 2e-05 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 6e-05 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 4e-04 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 4e-04 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 4e-04 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 5e-04 |
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 349 bits (897), Expect = e-119
Identities = 126/308 (40%), Positives = 187/308 (60%), Gaps = 13/308 (4%)
Query: 6 RILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVS 65
R+LDAP +++DYY ++DW NV+AVAL +++W ++G V L + E Y SV
Sbjct: 83 RVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAET-DESTYVASVK 141
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
WSHD L+VG + + ++D E+ +R + GH RV SWN H+L+SGS+ +I
Sbjct: 142 WSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAI 198
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF 185
+HDVR++N+ ++ HS EVCGL W ++G LASGG+DNVV+IW+ SS
Sbjct: 199 HHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD---ARSSIPKFTK 255
Query: 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHH 245
T+H VKA+AW P Q N+LATGGG D I WN G ++ +DA +Q+ L W+ H
Sbjct: 256 TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHS 315
Query: 246 KEILSGHGFSASGDGNKLCLWKYP--NMTKVGELQSSNSRILDLSQSPDGLTVATAGADE 303
KEI+S HGF N L +W Y +TK ++ + ++R+L + SPDG ++TA +DE
Sbjct: 316 KEIMSTHGFP----DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE 371
Query: 304 TIRFWEAF 311
++FW +
Sbjct: 372 NLKFWRVY 379
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 3e-26
Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 10/171 (5%)
Query: 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILT--SG 119
++W D LA G D+ +Q+WDA +S H+ V +W W ++L G
Sbjct: 221 CGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG 280
Query: 120 SKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLAS--GGDDNVVRIWERSKMS 177
+ DK I + + + + A S +V L WS + S G DN + IW S
Sbjct: 281 TMDKQIHFWNAA-TGARVNTVDAGS-QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338
Query: 178 SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIH 228
+K H V A SP +L+T D +K W V G +
Sbjct: 339 LTK-QVDIPAHDTRVLYSALSPDG-RILSTAAS--DENLKFWRVYDGDHVK 385
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 6e-06
Identities = 12/67 (17%), Positives = 26/67 (38%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W + + + K + +P D + S D + L+ D L+ W V+
Sbjct: 331 IWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPI 390
Query: 100 HRRVATS 106
+ ++S
Sbjct: 391 TKTPSSS 397
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 6e-41
Identities = 61/275 (22%), Positives = 98/275 (35%), Gaps = 22/275 (8%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+ + N +V G + ++ D KTL DS +Q+W+ +T V L+ H
Sbjct: 987 IIELPNNRVFSSGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAH 1043
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
V + +L S S D ++ +V + + H G V S++
Sbjct: 1044 QETVKDFRLLQ-DSRLL-SWSFDGTVKVWNVI-TGRIERDFTCHQGTVLSCAISSDATKF 1100
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219
+S D +IW LH H G V+ A+S +LATG ++G I+IW
Sbjct: 1101 SSTSADKTAKIWS---FDLLSPLHELKGHNGCVRCSAFSLDG-ILLATGD--DNGEIRIW 1154
Query: 220 NVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFS------ASGDGNKLCLWKYPNMTK 273
NV G +H + G H + FS S G L W
Sbjct: 1155 NVSDGQLLHSCAPISVEEGTA--THGGWVTDVC-FSPDSKTLVSAGGY-LKWWNVATGDS 1210
Query: 274 VGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
++ + + + SPD T T +
Sbjct: 1211 SQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYIL 1245
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 3e-39
Identities = 56/285 (19%), Positives = 110/285 (38%), Gaps = 21/285 (7%)
Query: 39 FLWKWENGKVKKLLQV---PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN 95
+W N K K L D +S D + +A D LQ++ AET + + +
Sbjct: 593 LYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD 652
Query: 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNE 155
++ H V +++ + + + S DK + D + + HS +V ++N+
Sbjct: 653 IKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSA-TGKLVHTYDEHSEQVNCCHFTNK 710
Query: 156 GN--LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213
N LLA+G +D +++W+ ++ + + H V +SP +LA+ D
Sbjct: 711 SNHLLLATGSNDFFLKLWD---LNQKECRNTMFGHTNSVNHCRFSPDD-ELLASCS--AD 764
Query: 214 GCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFS------ASGDGNKLCLW 266
G +++W+V+ I+ K + + + I+ +S NK+ L+
Sbjct: 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 824
Query: 267 KYPNMTKVGE-LQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ E +S I SP A + + W
Sbjct: 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 869
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 6e-34
Identities = 48/271 (17%), Positives = 90/271 (33%), Gaps = 62/271 (22%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
L + G++ + + S + +A G D +++ + +++ + GH
Sbjct: 948 LIAGKTGQIDY-----LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGH 1002
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
+ V + +G L S S+D I + + + V ++AH V + + L
Sbjct: 1003 KKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYVF--LQAHQETVKDFRLLQDSRL- 1058
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219
S D V++W + + + FT H G V + A S ++ D KIW
Sbjct: 1059 LSWSFDGTVKVWN---VITGRIERDFTCHQGTVLSCAISSDA-TKFSSTS--ADKTAKIW 1112
Query: 220 NVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS 279
+ + +H L GH
Sbjct: 1113 SFDLLSPLH-------------------ELKGH--------------------------- 1126
Query: 280 SNSRILDLSQSPDGLTVATAGADETIRFWEA 310
N + + S DG+ +AT + IR W
Sbjct: 1127 -NGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 6e-34
Identities = 43/275 (15%), Positives = 91/275 (33%), Gaps = 24/275 (8%)
Query: 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96
VL +G + ++ G +S + ++LW+ ++ V +
Sbjct: 821 VLLFDIHTSGLLAEIHT--GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC 878
Query: 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156
GH V ++ +G + S D++I + V + + +
Sbjct: 879 RGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWET---KKVCKNSAIVLKQEIDVVFQENE 934
Query: 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCI 216
++ + + +++ + K+ V SPH +A G EDG I
Sbjct: 935 TMVLAVDNIRGLQLI------AGKTGQIDYLPEAQVSCCCLSPHL-EYVAFGD--EDGAI 985
Query: 217 KIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVG 275
KI + K + +++ K ++S S D + +W + V
Sbjct: 986 KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISS-----SEDS-VIQVWNWQTGDYVF 1039
Query: 276 ELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
LQ+ + D D + + D T++ W
Sbjct: 1040 -LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNV 1072
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 36/192 (18%), Positives = 71/192 (36%), Gaps = 19/192 (9%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W G++++ S + S DA + D ++W + + L+GH
Sbjct: 1069 VWNVITGRIERDFT--CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH 1126
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVR--------VSNNVTSCIKAHSGEVCGLK 151
+ V S+++ +G +L +G + I +V +V H G V +
Sbjct: 1127 NGCVRCSAFSL-DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVC 1185
Query: 152 WSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGR 211
+S + L S G ++ W +++ S F + +K + SP T
Sbjct: 1186 FSPDSKTLVSAGGY--LKWWN---VATGDSSQTFYTNGTNLKKIHVSPDF-RTYVTVD-- 1237
Query: 212 EDGCIKIWNVQK 223
G + I V +
Sbjct: 1238 NLGILYILQVLE 1249
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 3e-39
Identities = 55/307 (17%), Positives = 98/307 (31%), Gaps = 26/307 (8%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET----SKLVRN 95
LW +K + D + WSH+ K +A + L+L+ +
Sbjct: 49 LWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMAR 108
Query: 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR--------VSNNVTSCIKAHSGEV 147
H V T +N ++L SG + I D+ + + EV
Sbjct: 109 FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168
Query: 148 CGLKWS-NEGNLLASGGDDNVVRIWERSKMSSSKSL---HRFTDHCGGVKALAWSPHQVN 203
L W+ + ++ AS G N IW+ L + + + W P
Sbjct: 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST 228
Query: 204 VLATG-GGREDGCIKIWNVQKGTCIHGIDAK---AQICGLEWNRHHKEILSGHGFSASGD 259
+AT G D I IW+++ + I L+W + +L S+ D
Sbjct: 229 RVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL----SSGRD 284
Query: 260 GNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLT-VATAGADETIRFWEAFGPSGDED 318
N + LW + ++ + + + +P+ A A D I + D
Sbjct: 285 -NTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD 343
Query: 319 SVSHLAG 325
Sbjct: 344 EQETETK 350
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-36
Identities = 56/277 (20%), Positives = 107/277 (38%), Gaps = 31/277 (11%)
Query: 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH--HRRVATSSWNHWNGHI 115
D P VS + A DS L+LW + + + + W+H N I
Sbjct: 23 DKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSH-NNKI 81
Query: 116 LTSGSKDKSIINHDVRVSNNVTSCI---KAHSGEVCGLKWS-NEGNLLASGGDDNVVRIW 171
+ + S+ + +NN + + HS V +K++ + N+LASGG++ + IW
Sbjct: 82 IAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW 141
Query: 172 ------ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT 225
E + + + V +LAW+ +V A+ G IW+++
Sbjct: 142 DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG--SSNFASIWDLKAKK 199
Query: 226 CIHGIDAKAQICG-------LEWNRHHKEILSGHGFSASGDG--NKLCLWKYPNM-TKVG 275
+ + + G +EW+ + ++ +A+G + +W N T +
Sbjct: 200 EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA----TATGSDNDPSILIWDLRNANTPLQ 255
Query: 276 ELQSSNSR-ILDLSQSP-DGLTVATAGADETIRFWEA 310
L + + IL L D + ++G D T+ W
Sbjct: 256 TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-27
Identities = 45/306 (14%), Positives = 101/306 (33%), Gaps = 48/306 (15%)
Query: 40 LWKWENGKVKK--LLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDAETSKLVR-- 94
L+ + + +V ++ LA G + ++ +WD
Sbjct: 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN 152
Query: 95 -------NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR-----VSNNVTSCIKA 142
V + +WN H+ S D++ + + TS
Sbjct: 153 YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSG 212
Query: 143 HSGEVCGLKWSNEGN---LLASGGD-DNVVRIWE-RSKMSSSKSLHRFTDHCGGVKALAW 197
++ ++W + + A+G D D + IW+ R+ + ++L++ H G+ +L W
Sbjct: 213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQ--GHQKGILSLDW 270
Query: 198 SPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQIC-GLEWNRHHKEILSGHGFSA 256
++L + G D + +WN + + A+ C ++ ++ + A
Sbjct: 271 CHQDEHLLLSSG--RDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFA----CA 324
Query: 257 SGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316
S D K+ + + +L+ + D T + FW
Sbjct: 325 SFDN-KIEVQ----------------TLQNLTNTLDEQETETKQQESETDFWNNVSREES 367
Query: 317 EDSVSH 322
++ S
Sbjct: 368 KEKPSV 373
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 3e-11
Identities = 17/137 (12%), Positives = 37/137 (27%), Gaps = 18/137 (13%)
Query: 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDAETSKLVR 94
P + +W N G S+ W D L D+ + LW+ E+++ +
Sbjct: 240 PSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS 299
Query: 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN 154
+ + + S D I ++ L +
Sbjct: 300 QFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ-----------------NLTNTL 342
Query: 155 EGNLLASGGDDNVVRIW 171
+ + ++ W
Sbjct: 343 DEQETETKQQESETDFW 359
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 7e-10
Identities = 21/155 (13%), Positives = 55/155 (35%), Gaps = 22/155 (14%)
Query: 162 GGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV 221
G ++V++ E S++ H ++ + V A D +++W++
Sbjct: 1 GAMGSMVKLAEF-----SRTATFAWSHDKIPLLVSGTVSG-TVDANFST--DSSLELWSL 52
Query: 222 QKGTCIH---GIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLW----KYPNMTKV 274
+ ++ L+W+ ++K I +G+ L L+ + +
Sbjct: 53 LAADSEKPIASLQVDSKFNDLDWSHNNKIIAGA-----LDNGS-LELYSTNEANNAINSM 106
Query: 275 GELQSSNSRILDLSQSP-DGLTVATAGADETIRFW 308
+ +S + + + +A+ G + I W
Sbjct: 107 ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW 141
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 139 bits (354), Expect = 3e-39
Identities = 58/285 (20%), Positives = 112/285 (39%), Gaps = 41/285 (14%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+WKW + ++ + G SV SH A +D+ ++LWD E K +++++
Sbjct: 62 VWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG 121
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
T +++ + L +G+ + V S + + + +S +G L
Sbjct: 122 PVDAWTLAFSP-DSQYLATGTHVGKVNIFGVE-SGKKEYSLDTRGKFILSIAYSPDGKYL 179
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219
ASG D ++ I++ +++ K LH H +++L +SP +L T +DG IKI+
Sbjct: 180 ASGAIDGIINIFD---IATGKLLHTLEGHAMPIRSLTFSPDS-QLLVTAS--DDGYIKIY 233
Query: 220 NVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG-------FS------ASGDGNK-LCL 265
+VQ LSGH F S +K + +
Sbjct: 234 DVQHANLAG-------------------TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKV 274
Query: 266 WKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
W T V ++ + + +G + + G D+ I ++
Sbjct: 275 WDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 122 bits (310), Expect = 1e-32
Identities = 62/291 (21%), Positives = 111/291 (38%), Gaps = 49/291 (16%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWS----HDAKTLAVGYMDSKLQLWDAET--SKLV 93
+ G + K Q DD SV+W +++T+ G +D +++W L
Sbjct: 16 QGTNQYGILFKQEQ--AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ 73
Query: 94 RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWS 153
+LEGH V + +H I S S D I D+ + I A + L +S
Sbjct: 74 WSLEGHQLGVVSVDISH-TLPIAASSSLDAHIRLWDLE-NGKQIKSIDAGPVDAWTLAFS 131
Query: 154 NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213
+ LA+G V I+ + S K + + ++A+SP LA+G D
Sbjct: 132 PDSQYLATGTHVGKVNIFG---VESGKKEYSLDTRGKFILSIAYSPDG-KYLASGA--ID 185
Query: 214 GCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG-------FS------ASG-D 259
G I I+++ G +H L GH FS + D
Sbjct: 186 GIINIFDIATGKLLH-------------------TLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 260 GNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ ++ + G L S +L+++ PD ++ +D++++ W+
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 3e-30
Identities = 45/256 (17%), Positives = 85/256 (33%), Gaps = 43/256 (16%)
Query: 73 LAVGYMDSKLQLWDAETSKLVRNLEGHHRRV---ATSSWNHWNGHILTSGSKDKSIINHD 129
++ + L + + H + A + N + +GS D +
Sbjct: 5 HHHSSRENLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWK 64
Query: 130 VRV-SNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDH 188
R ++ ++ H V + S+ + AS D +R+W+ + + K +
Sbjct: 65 WRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD---LENGKQIKSIDAG 121
Query: 189 CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEI 248
LA+SP LATG G + I+ V+ G +
Sbjct: 122 PVDAWTLAFSPDS-QYLATGT--HVGKVNIFGVESGKKEY-------------------S 159
Query: 249 LSGHG-------FS------ASGDGNK-LCLWKYPNMTKVGELQSSNSRILDLSQSPDGL 294
L G +S ASG + + ++ + L+ I L+ SPD
Sbjct: 160 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 219
Query: 295 TVATAGADETIRFWEA 310
+ TA D I+ ++
Sbjct: 220 LLVTASDDGYIKIYDV 235
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 6e-28
Identities = 42/183 (22%), Positives = 86/183 (46%), Gaps = 10/183 (5%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
++ E+GK + L + S+++S D K LA G +D + ++D T KL+ LEGH
Sbjct: 148 IFGVESGKKEYSLD--TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 205
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
+ + +++ + +L + S D I +DV+ N+ + H+ V + + +
Sbjct: 206 AMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQ-HANLAGTLSGHASWVLNVAFCPDDTHF 263
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219
S D V++W+ + + +H F DH V + ++ + + + G +D I I+
Sbjct: 264 VSSSSDKSVKVWD---VGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVG--DDQEIHIY 317
Query: 220 NVQ 222
+
Sbjct: 318 DCP 320
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 1e-37
Identities = 70/309 (22%), Positives = 119/309 (38%), Gaps = 71/309 (22%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W +E G ++ L+ G D +S+ H K LA D ++LWD + + +R + GH
Sbjct: 134 VWDYETGDFERTLK--GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH 191
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT-SCIK---AHSGEVCGLKWSNE 155
V++ S NG + S S+DK+I ++ T C+K H V ++ + +
Sbjct: 192 DHNVSSVSIMP-NGDHIVSASRDKTI-----KMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 156 GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNV----------- 204
G L+AS +D VR+W +++ + +H V+ ++W+P
Sbjct: 246 GTLIASCSNDQTVRVWV---VATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 302
Query: 205 --------LATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG--- 253
L +G D IK+W+V G C+ L GH
Sbjct: 303 KSGKPGPFLLSGS--RDKTIKMWDVSTGMCLM-------------------TLVGHDNWV 341
Query: 254 ------------FSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA 301
S + D L +W Y N + L + + L V T
Sbjct: 342 RGVLFHSGGKFILSCADD-KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 400
Query: 302 DETIRFWEA 310
D+T++ WE
Sbjct: 401 DQTVKVWEC 409
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 1e-32
Identities = 47/260 (18%), Positives = 90/260 (34%), Gaps = 57/260 (21%)
Query: 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK 121
T V + + D+ +++WD ET R L+GH V S++H +G +L S S
Sbjct: 112 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSA 170
Query: 122 DKSIINHDVRVSNNVT-SCIK---AHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMS 177
D +I ++ + CI+ H V + G+ + S D +++WE +
Sbjct: 171 DMTI-----KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE---VQ 222
Query: 178 SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQIC 237
+ + FT H V+ + + ++A+ D +++W V C
Sbjct: 223 TGYCVKTFTGHREWVRMVRPNQDG-TLIASCS--NDQTVRVWVVATKECKA--------- 270
Query: 238 GLEWNRHHKEILSGHG-------FSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQS 290
L H ++ P + S +
Sbjct: 271 ----------ELREHRHVVECISWA-------------PESSYS--SISEATGSETKKSG 305
Query: 291 PDGLTVATAGADETIRFWEA 310
G + + D+TI+ W+
Sbjct: 306 KPGPFLLSGSRDKTIKMWDV 325
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 5e-26
Identities = 40/206 (19%), Positives = 76/206 (36%), Gaps = 36/206 (17%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W+ + G K G ++ V + D +A D +++W T + L H
Sbjct: 218 MWEVQTGYCVKTFT--GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 275
Query: 100 HRRV-------------------ATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT-SC 139
V + + + G L SGS+DK+I ++ + T C
Sbjct: 276 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI-----KMWDVSTGMC 330
Query: 140 IK---AHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALA 196
+ H V G+ + + G + S DD +R+W+ + + + H V +L
Sbjct: 331 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD---YKNKRCMKTLNAHEHFVTSLD 387
Query: 197 WSPHQVNVLATGGGREDGCIKIWNVQ 222
+ + TG D +K+W +
Sbjct: 388 FHKTA-PYVVTGS--VDQTVKVWECR 410
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 2e-11
Identities = 25/158 (15%), Positives = 42/158 (26%), Gaps = 54/158 (34%)
Query: 153 SNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE 212
E G + W + + H V + + P +V+ + E
Sbjct: 76 KEEFTSGGPLGQKRDPKEWI----PRPPEKYALSGHRSPVTRVIFHPVF-SVMVSAS--E 128
Query: 213 DGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT 272
D IK+W+ + G L GH
Sbjct: 129 DATIKVWDYETGDFER-------------------TLKGH-------------------- 149
Query: 273 KVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ D+S G +A+ AD TI+ W+
Sbjct: 150 --------TDSVQDISFDHSGKLLASCSADMTIKLWDF 179
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 134 bits (341), Expect = 2e-37
Identities = 67/292 (22%), Positives = 121/292 (41%), Gaps = 51/292 (17%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W +GK +K + G + V+WS D+ L D L++WD + K ++ L+GH
Sbjct: 49 IWGAYDGKFEKTIS--GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 106
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
V ++N +++ SGS D+S+ DV+ + + AHS V + ++ +G+L+
Sbjct: 107 SNYVFCCNFNP-QSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLI 164
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTD-HCGGVKALAWSPHQVNVLATGGGREDGCIKI 218
S D + RIW+ +S + L D V + +SP+ + D +K+
Sbjct: 165 VSSSYDGLCRIWD---TASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAAT--LDNTLKL 218
Query: 219 WNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG------------------FSASGDG 260
W+ KG C+ +GH S S D
Sbjct: 219 WDYSKGKCLK-------------------TYTGHKNEKYCIFANFSVTGGKWIVSGSED- 258
Query: 261 NKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA--DETIRFWEA 310
N + +W V +LQ ++ + P +A+A D+TI+ W++
Sbjct: 259 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 8e-35
Identities = 59/282 (20%), Positives = 110/282 (39%), Gaps = 41/282 (14%)
Query: 44 ENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRV 103
N +K L G +SV +S + + LA D +++W A K + + GH +
Sbjct: 11 PNYALKFTLA--GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT-SCIK---AHSGEVCGLKWSNEGNLL 159
+ +W+ + ++L S S DK++ ++ + + C+K HS V ++ + NL+
Sbjct: 69 SDVAWSS-DSNLLVSASDDKTL-----KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219
SG D VRIW+ + + K L H V A+ ++ +++ + DG +IW
Sbjct: 123 VSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSSS--YDGLCRIW 176
Query: 220 NVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFS--------ASGDGNKLCLWKYPNM 271
+ G C+ + +S FS A+ D N L LW Y
Sbjct: 177 DTASGQCLKTL-----------IDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKG 224
Query: 272 TKVGELQSSNSRILDLSQS---PDGLTVATAGADETIRFWEA 310
+ + + + G + + D + W
Sbjct: 225 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 2e-36
Identities = 53/305 (17%), Positives = 99/305 (32%), Gaps = 41/305 (13%)
Query: 41 WKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH 100
K ++ L+ G + + W D + + D K+ +WD+ T+ +
Sbjct: 49 LGQFVMKTRRTLK--GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPC 106
Query: 101 RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC-----IKAHSGEVCGLKWSNE 155
V ++ +G + G D + + N + H+ + ++N
Sbjct: 107 TWVMACAYAP-SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS 165
Query: 156 GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP-HQVNVLATGGGREDG 214
+ + D +W+ + S + L F H V L +P N +GG D
Sbjct: 166 DMQILTASGDGTCALWD---VESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG--CDK 220
Query: 215 CIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS------GHGF-SASGDGNKLCLW- 266
+W+++ G C+ + H ++ S G F S S D L+
Sbjct: 221 KAMVWDMRSGQCVQAFET-----------HESDVNSVRYYPSGDAFASGSDD-ATCRLYD 268
Query: 267 -KYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW-----EAFGP-SGDEDS 319
+ + +S + S G + D TI W G E+
Sbjct: 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR 328
Query: 320 VSHLA 324
VS L
Sbjct: 329 VSTLR 333
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 3e-33
Identities = 48/294 (16%), Positives = 102/294 (34%), Gaps = 55/294 (18%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE------TSKLV 93
+W + + + + +++ +A G +D+K ++ +
Sbjct: 90 VWDSFTTNKEHAV--TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKK 147
Query: 94 RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWS 153
+++ H ++ S+ + + + + S D + DV S + H +V L +
Sbjct: 148 KSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVE-SGQLLQSFHGHGADVLCLDLA 205
Query: 154 --NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGR 211
GN SGG D +W+ M S + + F H V ++ + P + A+G
Sbjct: 206 PSETGNTFVSGGCDKKAMVWD---MRSGQCVQAFETHESDVNSVRYYPSG-DAFASGS-- 259
Query: 212 EDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG-----------------F 254
+D ++++++ + I S F
Sbjct: 260 DDATCRLYDLRADREVA-------------------IYSKESIIFGASSVDFSLSGRLLF 300
Query: 255 SASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
+ D + +W ++V L +R+ L SPDG + D T+R W
Sbjct: 301 AGYNDYT-INVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-30
Identities = 52/288 (18%), Positives = 93/288 (32%), Gaps = 57/288 (19%)
Query: 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET--------------SKLVRNLEGHHR 101
G + T S +A++L + + +L D E K R L+GH
Sbjct: 6 GLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGN 65
Query: 102 RVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLAS 161
+V W + + S S+D +I D + N + V ++ G +A
Sbjct: 66 KVLCMDWCK-DKRRIVSSSQDGKVIVWDSF-TTNKEHAVTMPCTWVMACAYAPSGCAIAC 123
Query: 162 GGDDNVVRIWE---RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKI 218
GG DN ++ + + H + A +++ + T G DG +
Sbjct: 124 GGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASG--DGTCAL 180
Query: 219 WNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG-------FSASGDGNKL-------- 263
W+V+ G + GHG + S GN
Sbjct: 181 WDVESGQLLQ-------------------SFHGHGADVLCLDLAPSETGNTFVSGGCDKK 221
Query: 264 -CLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+W + V ++ S + + P G A+ D T R ++
Sbjct: 222 AMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 4e-22
Identities = 45/238 (18%), Positives = 77/238 (32%), Gaps = 37/238 (15%)
Query: 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC-------------IKA 142
+G H +S L +++ HDV + +K
Sbjct: 4 TDGLHENETLASLKS-EAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKG 62
Query: 143 HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQV 202
H +V + W + + S D V +W+ ++ H T C V A A++P
Sbjct: 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWD---SFTTNKEHAVTMPCTWVMACAYAPSG- 118
Query: 203 NVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFS------- 255
+A GG D ++ + + K + H LS F+
Sbjct: 119 CAIACGG--LDNKCSVYPLTFDKNENMAAKKKSVAM------HTNYLSACSFTNSDMQIL 170
Query: 256 -ASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPD--GLTVATAGADETIRFWEA 310
ASGD LW + + + +L L +P G T + G D+ W+
Sbjct: 171 TASGD-GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 3e-36
Identities = 51/280 (18%), Positives = 106/280 (37%), Gaps = 32/280 (11%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET----SKLVRN 95
+W + P + + +++ +A G +D+ +++ +T ++ R
Sbjct: 81 IWDSYTTNKVHAI--PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138
Query: 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNE 155
L GH ++ + + I+ + S D + D+ T+ H+G+V L + +
Sbjct: 139 LAGHTGYLSCCRFLD-DNQIV-TSSGDTTCALWDIETGQQTTT-FTGHTGDVMSLSLAPD 195
Query: 156 GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215
L SG D ++W+ + FT H + A+ + P N ATG +D
Sbjct: 196 TRLFVSGACDASAKLWD---VREGMCRQTFTGHESDINAICFFP-NGNAFATGS--DDAT 249
Query: 216 IKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS------GHG-FSASGDGNKLCLWKY 268
++++++ + + I S G + D N +W
Sbjct: 250 CRLFDLRADQELMT---------YSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDA 299
Query: 269 PNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
+ G L ++R+ L + DG+ VAT D ++ W
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 3e-34
Identities = 53/302 (17%), Positives = 110/302 (36%), Gaps = 40/302 (13%)
Query: 41 WKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH 100
+ ++ L+ G ++ W D++ L D KL +WD+ T+ V +
Sbjct: 40 VGRIQMRTRRTLR--GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS 97
Query: 101 RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI---KAHSGEVCGLKWSNEGN 157
V T ++ +G+ + G D ++++ H+G + ++ ++
Sbjct: 98 SWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156
Query: 158 LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIK 217
+ + D +W+ + + + FT H G V +L+ +P + +G D K
Sbjct: 157 -IVTSSGDTTCALWD---IETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGAC--DASAK 209
Query: 218 IWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS------GHGF-SASGDGNKLCLWKYPN 270
+W+V++G C H +I + G+ F + S D L+
Sbjct: 210 LWDVREGMCRQTFTG-----------HESDINAICFFPNGNAFATGSDD-ATCRLFDLRA 257
Query: 271 MTKVGELQ--SSNSRILDLSQSPDGLTVATAGADETIRFW-----EAFGP-SGDEDSVSH 322
++ + I +S S G + D W + G +G ++ VS
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317
Query: 323 LA 324
L
Sbjct: 318 LG 319
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 1e-23
Identities = 42/182 (23%), Positives = 66/182 (36%), Gaps = 10/182 (5%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
LW E G+ G S+S + D + G D+ +LWD + GH
Sbjct: 168 LWDIETGQQTTTFT--GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV-TSCIKAHSGEVCGLKWSNEGNL 158
+ + NG+ +GS D + D+R + T + + +S G L
Sbjct: 226 ESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 159 LASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKI 218
L +G DD +W+ + H V L + +ATG D +KI
Sbjct: 285 LLAGYDDFNCNVWD---ALKADRAGVLAGHDNRVSCLGVTDDG-MAVATGS--WDSFLKI 338
Query: 219 WN 220
WN
Sbjct: 339 WN 340
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 7e-36
Identities = 61/297 (20%), Positives = 119/297 (40%), Gaps = 48/297 (16%)
Query: 50 KLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWD----------AETSKLVRNLEG 98
++ + + +A +A S + ++D + + L G
Sbjct: 120 EIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG 179
Query: 99 HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI------KAHSGEVCGLKW 152
H + SWN L S S D +I D+ + I H+ V + W
Sbjct: 180 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW 239
Query: 153 S-NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGR 211
+L S DD + IW+ ++SK H H V L+++P+ +LATG
Sbjct: 240 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS-- 297
Query: 212 EDGCIKIWNVQKGTC-IHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269
D + +W+++ +H ++ K +I ++W+ H++ IL+ S+ D +L +W
Sbjct: 298 ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA----SSGTD-RRLHVW--- 349
Query: 270 NMTKVGELQSSN-----------------SRILDLSQSPDG-LTVATAGADETIRFW 308
+++K+GE QS+ ++I D S +P+ + + D ++ W
Sbjct: 350 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 4e-26
Identities = 51/270 (18%), Positives = 100/270 (37%), Gaps = 31/270 (11%)
Query: 63 SVSWSHDAKTLAVGYMDSKLQLWDAETSK----LVRNLEGHHRRVATSSWNHWNGHILTS 118
SV + + D++ + S + H V + + N ++ +
Sbjct: 87 SVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIAT 146
Query: 119 GSKDKSIINHDVR---------VSNNVTSCIKAHSGEVCGLKWS-NEGNLLASGGDDNVV 168
+ ++ D ++ H E GL W+ N L S DD+ +
Sbjct: 147 KTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTI 206
Query: 169 RIWERSKMSSS----KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV--- 221
+W+ + + + FT H V+ +AW ++ + +D + IW+
Sbjct: 207 CLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA--DDQKLMIWDTRNN 264
Query: 222 QKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT-KVGELQS 279
H +DA A++ L +N + + IL+ + S D + LW N+ K+ +S
Sbjct: 265 NTSKPSHTVDAHTAEVNCLSFNPYSEFILA----TGSADKT-VALWDLRNLKLKLHSFES 319
Query: 280 SNSRILDLSQSPDGLTV-ATAGADETIRFW 308
I + SP T+ A++G D + W
Sbjct: 320 HKDEIFQVQWSPHNETILASSGTDRRLHVW 349
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 7e-15
Identities = 34/201 (16%), Positives = 68/201 (33%), Gaps = 57/201 (28%)
Query: 38 LFLWKWENGKVKKLLQ-VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96
L +W N K V +S++
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY--------------------------- 288
Query: 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWS-NE 155
+ IL +GS DK++ D+R ++H E+ ++WS +
Sbjct: 289 ---------------SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN 333
Query: 156 GNLLASGGDDNVVRIWERSKMSSSKSLHRFTD-----------HCGGVKALAWSPHQVNV 204
+LAS G D + +W+ SK+ +S D H + +W+P++ +
Sbjct: 334 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWI 393
Query: 205 LATGGGREDGCIKIWNVQKGT 225
+ + ED +++W + +
Sbjct: 394 ICSVS--EDNIMQVWQMAENV 412
|
| >3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 9e-35
Identities = 13/262 (4%), Positives = 44/262 (16%), Gaps = 25/262 (9%)
Query: 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK 121
Y ++ K L+ R + + + ++
Sbjct: 29 LGTKNCDFQMERY-VYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQ-DIIVQSARPY 86
Query: 122 DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE----RSKMS 177
+ + + + H+ + + + + + +
Sbjct: 87 GQRAVLKFAQ-YTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGN 145
Query: 178 SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQIC 237
TD + + + G + +Q I
Sbjct: 146 IPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCL--FWLLARMVLQMRGTIL------PGH 197
Query: 238 GLEWNRHHKEILS-------GHGF-SASGDGNKLCLWKYPNMTKVGE-LQSSNSRILDLS 288
+ + + + +Y + +
Sbjct: 198 KWDVMVDLFFYRDPEEAKEQEEEEAALVAP-DYGAVAEYAAPAADTWGGEWGTDAAAQPA 256
Query: 289 QSPDGLTVATAGADETIRFWEA 310
P A
Sbjct: 257 AIPAQAGADWTAAPAPAAGGWD 278
|
| >3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 7e-10
Identities = 5/151 (3%), Positives = 15/151 (9%), Gaps = 43/151 (28%)
Query: 177 SSSKSLHRFTDHCGGVKALAWSP--HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA 234
S + + + + I+ + G
Sbjct: 13 SQREQDIQMMLAADVHLGTKNCDFQMER------YVYKRRTDGIYIINLGKTWE------ 60
Query: 235 QICGLEWNRHHKEILSGHG-------F--------SASGDGNKLCLWKYPNMTKVGELQS 279
L + + L
Sbjct: 61 -------------KLQLAARVIVAIENPQDIIVQSARPYGQ-RAVLKFAQYTGAHAIAGR 106
Query: 280 SNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ +
Sbjct: 107 HTPGTFTNQLQTSFSEPRLLILTDPRTDHQP 137
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 1e-34
Identities = 56/305 (18%), Positives = 103/305 (33%), Gaps = 67/305 (21%)
Query: 40 LWKWEN-----GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR 94
WK G + + G + + D D L+LWD T + +
Sbjct: 44 SWKLTGDDQKFGVPVRSFK--GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ 101
Query: 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI---KAHSGEVCGLK 151
GH V + + ++ SGS+DK+I +V C+ H+ V ++
Sbjct: 102 RFVGHKSDVMSVDIDK-KASMIISGSRDKTI-----KVWTIKGQCLATLLGHNDWVSQVR 155
Query: 152 WS------NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVL 205
++ + S G+D +V+ W ++ + F H + L SP ++
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWN---LNQFQIEADFIGHNSNINTLTASP-DGTLI 211
Query: 206 ATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG------FS---- 255
A+ G +DG I +WN+ ++ LS FS
Sbjct: 212 ASAG--KDGEIMLWNLAAKKAMY-------------------TLSAQDEVFSLAFSPNRY 250
Query: 256 --ASGDGNKLCLW--------KYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETI 305
A+ + ++ G +++ + L+ S DG T+ D I
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 306 RFWEA 310
R W+
Sbjct: 311 RVWQV 315
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 6e-26
Identities = 50/295 (16%), Positives = 93/295 (31%), Gaps = 62/295 (21%)
Query: 44 ENGKVKKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWD-----AETSKLVRNLE 97
E ++ L+ G + + TS++ S L D L W + VR+ +
Sbjct: 5 EVLVLRGTLE--GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 98 GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157
GH V + +G S S DK++ DV + H +V + + +
Sbjct: 63 GHSHIVQDCTLTA-DGAYALSASWDKTLRLWDVA-TGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 158 LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNV-----LATGGGRE 212
++ SG D +++W + L H V + P++ + + G
Sbjct: 121 MIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG--N 174
Query: 213 DGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG-------FS------ASG- 258
D +K WN+ + GH S AS
Sbjct: 175 DKMVKAWNLNQFQIEA-------------------DFIGHNSNINTLTASPDGTLIASAG 215
Query: 259 DGNKLCLWKYPNMTKVGELQSS---NSRILDLSQSPDGLTVATAGADETIRFWEA 310
++ LW + + + L+ SP+ +A A I+ +
Sbjct: 216 KDGEIMLWN----LAAKKAMYTLSAQDEVFSLAFSPNRYWLA-AATATGIKVFSL 265
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 1e-16
Identities = 36/194 (18%), Positives = 69/194 (35%), Gaps = 21/194 (10%)
Query: 43 WE-NGKVKKLLQVPGEDDYPTSVSWS------HDAKTLAVGYMDSKLQLWDAETSKLVRN 95
W G+ L G +D+ + V D+ T+ D ++ W+ ++ +
Sbjct: 134 WTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNE 155
GH+ + T + + +G ++ S KD I+ ++ + + A EV L +S
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLA-AKKAMYTLSAQD-EVFSLAFSPN 248
Query: 156 GNLLASGGDDNVVRIWERSKMSSSKSLHRFTD-----HCGGVKALAWSPHQVNVLATGGG 210
LA+ + +++ L +LAWS L G
Sbjct: 249 RYWLAAATATGI-KVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG-QTLFAGY- 305
Query: 211 REDGCIKIWNVQKG 224
D I++W V
Sbjct: 306 -TDNVIRVWQVMTA 318
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 6e-14
Identities = 26/173 (15%), Positives = 44/173 (25%), Gaps = 53/173 (30%)
Query: 143 HSGEVCGLKWS-NEGNLLASGGDDNVVRIW--ERSKMSSSKSLHRFTDHCGGVKALAWSP 199
H+G V L S + NLL S D + W + F H V+ +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGD 259
+ D +++W+V G GH
Sbjct: 76 DG-AYALSAS--WDKTLRLWDVATGETYQ-------------------RFVGH------- 106
Query: 260 GNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312
S ++ + + + D+TI+ W G
Sbjct: 107 ---------------------KSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 1e-05
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 40 LWKWENGKVKKLLQVP------GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET 89
++ + + L+ + + S++WS D +TL GY D+ +++W T
Sbjct: 262 VFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 6e-34
Identities = 45/270 (16%), Positives = 92/270 (34%), Gaps = 50/270 (18%)
Query: 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK 121
+ + + ++++W+ ET VR+++ V + + + GS
Sbjct: 17 KGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSD 75
Query: 122 DKSIINHDVRVSNNVT-SCIK---AHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMS 177
D I RV N T + AH + + + SG DD V++W
Sbjct: 76 DFRI-----RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN---WE 127
Query: 178 SSKSLHR-FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQI 236
++ +L + F H V +A++P + A+G D +K+W++ + T
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC--LDRTVKVWSLGQSTPNF-------- 177
Query: 237 CGLEWNRHHKEILSGHG-------FSASGDGNKL---------CLWKYPNMTKVGELQSS 280
+ +G + D + +W Y + V L+
Sbjct: 178 ----------TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Query: 281 NSRILDLSQSPDGLTVATAGADETIRFWEA 310
S + P + + D T++ W +
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 7e-30
Identities = 51/290 (17%), Positives = 96/290 (33%), Gaps = 47/290 (16%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W +E + +Q + + + + VG D ++++++ T + V + E H
Sbjct: 39 IWNYETQVEVRSIQ--VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWS-NEGNL 158
+ + + + + SGS D ++ + + + + H V + ++ + +
Sbjct: 97 PDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 159 LASGGDDNVVRIWERSKMSSSKSLHR-FTDHCGGVKALAWSPH-QVNVLATGGGREDGCI 216
ASG D V++W + S T GV + + P + T +D I
Sbjct: 156 FASGCLDRTVKVWS---LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS--DDLTI 210
Query: 217 KIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG---------------FSASGDGN 261
KIW+ Q +C+ L GH S S DG
Sbjct: 211 KIWDYQTKSCVA-------------------TLEGHMSNVSFAVFHPTLPIIISGSEDG- 250
Query: 262 KLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATA-GADETIRFWEA 310
L +W L R ++ P G A G D
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 5e-22
Identities = 46/315 (14%), Positives = 88/315 (27%), Gaps = 53/315 (16%)
Query: 27 NNVLAVAL---GPVLF---------LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKT-- 72
+NV P++ +W KV+K L + ++ +
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN--VGLERSWCIATHPTGRKNY 286
Query: 73 LAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV 132
+A G+ D+ + + +L+ + V + + S I + V
Sbjct: 287 IASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSG-----GKNAAASDIFTAVI-RGNEEV 339
Query: 133 SNNVTSCI-----KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD 187
+ + + L S G + GD V +L
Sbjct: 340 EQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYT---------ALAWRNK 390
Query: 188 HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKE 247
G + W P N A E G IK + K + + I
Sbjct: 391 AFGKCQDFVWGPDS-NSYALID--ETGQIKYYKNFKEVTSWSVPMHSAI---------DR 438
Query: 248 ILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRF 307
+ SG DG + + + N T V + + D+ S +G V +
Sbjct: 439 LFSGALLGVKSDG-FVYFFDWDNGTLVRRIDVN---AKDVIWSDNGELVMIVNTNSNGDE 494
Query: 308 WEAFGPSGDEDSVSH 322
+ ++D+
Sbjct: 495 ASGYTLLFNKDAYLE 509
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 3e-18
Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 15/173 (8%)
Query: 141 KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH 200
S V G+ + + + V IW + + V+A +
Sbjct: 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWN---YETQVEVRSIQVTETPVRAGKFIAR 66
Query: 201 QVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGD 259
+ N + G +D I+++N G + +A I + + +LSG S D
Sbjct: 67 K-NWIIVGS--DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG-----SDD 118
Query: 260 GNKLCLWKYPNMTKVGE-LQSSNSRILDLSQSP-DGLTVATAGADETIRFWEA 310
+ LW + N + + + ++ ++ +P D T A+ D T++ W
Sbjct: 119 -LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 2e-10
Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 36/143 (25%)
Query: 182 LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEW 241
F++ VK + + P + + T G ++IWN + +
Sbjct: 6 KKTFSNRSDRVKGIDFHPTE-PWVLTTL--YSGRVEIWNYETQVEVR------------- 49
Query: 242 NRHHKEILSGHG-------FSASG-------DGNKLCLWKYPNMTKVGELQSSNSRILDL 287
+ F A D ++ ++ Y KV + ++ I +
Sbjct: 50 ------SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 288 SQSPDGLTVATAGADETIRFWEA 310
+ P V + D T++ W
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNW 126
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 17/150 (11%), Positives = 45/150 (30%), Gaps = 10/150 (6%)
Query: 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK 121
W D+ + A+ +++ + ++ H ++ ++G +L S
Sbjct: 396 QDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMH-----SAIDRLFSGALLGVKS- 449
Query: 122 DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS 181
D + D ++ + WS+ G L+ ++ + +K
Sbjct: 450 DGFVYFFDWDNGT----LVRRIDVNAKDVIWSDNGELVMIVNTNSNGDEASGYTLLFNKD 505
Query: 182 LHRFTDHCGGVKALAWSPHQVNVLATGGGR 211
+ + G + +VL
Sbjct: 506 AYLEAANNGNIDDSEGVDEAFDVLYELSES 535
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 17/135 (12%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+ ++N K VP +++ L V D + +D + LVR ++ +
Sbjct: 416 IKYYKNFKEVTSWSVPM----HSAIDRLFSGALLGVKS-DGFVYFFDWDNGTLVRRIDVN 470
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
+ V S NG ++ + + + + + +N
Sbjct: 471 AKDVIWSD----NGELVMIVNTNSNGDEASGY--------TLLFNKDAYLEAANNGNIDD 518
Query: 160 ASGGDDNVVRIWERS 174
+ G D+ ++E S
Sbjct: 519 SEGVDEAFDVLYELS 533
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 6e-34
Identities = 39/252 (15%), Positives = 67/252 (26%), Gaps = 32/252 (12%)
Query: 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTS 118
D ++ L +D L++ + + A +
Sbjct: 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK-MLKRADYTAVDTAKL-QMRRFIL 114
Query: 119 GSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSS 178
G+ + I D N +AH E+ LK+ G L S D ++IW +
Sbjct: 115 GTTEGDIKVLDSN-FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWS---VKD 170
Query: 179 SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICG 238
+ H V +A + + DG I++W GT IH
Sbjct: 171 GSNPRTLIGHRATVTDIAIIDRG-RNVLSAS--LDGTIRLWECGTGTTIH---------- 217
Query: 239 LEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVAT 298
+ DG ++ + S S+ +L G V
Sbjct: 218 ---------TFNRK--ENPHDGVNSIALFVGTDRQL--HEISTSKKNNLEFGTYGKYVIA 264
Query: 299 AGADETIRFWEA 310
I
Sbjct: 265 GHVSGVITVHNV 276
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 7e-30
Identities = 43/303 (14%), Positives = 91/303 (30%), Gaps = 53/303 (17%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
L+ K+L DY + + +G + +++ D+ + + H
Sbjct: 82 LFNTIIRDGSKML---KRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAH 138
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT-SCIK---AHSGEVCGLKWSNE 155
+ + +G L S S+D + ++ + S + H V + +
Sbjct: 139 VSEITKLKFFP-SGEALISSSQDMQL-----KIWSVKDGSNPRTLIGHRATVTDIAIIDR 192
Query: 156 GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG------ 209
G + S D +R+WE ++ + +R + GV ++A L
Sbjct: 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 252
Query: 210 ------------GREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFS-- 255
G G I + NV + ++ S
Sbjct: 253 LEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL----------PSKFTCSCNSL-TVDGN 301
Query: 256 -----ASGDGNK-LCLW--KYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRF 307
+G N L W + P L + + I ++ + ++G D +I+
Sbjct: 302 NANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGA-LFVSSGFDTSIKL 360
Query: 308 WEA 310
Sbjct: 361 DII 363
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 4e-21
Identities = 27/301 (8%), Positives = 68/301 (22%), Gaps = 72/301 (23%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W ++G + L G T ++ + + +D ++LW+ T +
Sbjct: 165 IWSVKDGSNPRTLI--GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK 222
Query: 100 H------RRVATSSWNHW-----------------NGHILTSGSKDKSIINHDVRVSNNV 136
+A G + +G I H+V
Sbjct: 223 ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT 282
Query: 137 TSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKAL 195
+ L N + +G ++ ++ W+ + + + +
Sbjct: 283 IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWD-LRSPECPVGEFLINEGTPINNV 341
Query: 196 AWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFS 255
++ + + G D IK+ + +
Sbjct: 342 YFAAGAL--FVSSG--FDTSIKLDIISDPESERPA------------IEFETPTFLVSN- 384
Query: 256 ASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVAT---AGADETIRFWEAFG 312
++ C D + G + +
Sbjct: 385 -DDAVSQFCY------------------------VSDDESNGEVLEVGKNNFCALYNLSN 419
Query: 313 P 313
P
Sbjct: 420 P 420
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 6e-14
Identities = 19/206 (9%), Positives = 43/206 (20%), Gaps = 62/206 (30%)
Query: 113 GHILTSGSKDKSI-----INHDVRVSNNVTSCIKAHSGEV---CGLKWSNEGNLLASGGD 164
+ + + ++ ++ + +S V G + G+ L
Sbjct: 17 FKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGSHLYKARL 76
Query: 165 DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224
D ++ + + + G +G IK+ +
Sbjct: 77 DGHDFLFN----TIIRDGSKMLKRADYTAVDTAKLQM-RRFILGT--TEGDIKVLDSNFN 129
Query: 225 TCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRI 284
I H S I
Sbjct: 130 LQRE-------------------IDQAH----------------------------VSEI 142
Query: 285 LDLSQSPDGLTVATAGADETIRFWEA 310
L P G + ++ D ++ W
Sbjct: 143 TKLKFFPSGEALISSSQDMQLKIWSV 168
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 1e-33
Identities = 54/295 (18%), Positives = 103/295 (34%), Gaps = 45/295 (15%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKT---LAVGYMDSKLQLWDAETSKLVRNL 96
+W + + ++ S S + +AVG K+QL D ++ L
Sbjct: 126 VWDTNTLQTADVF---NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL 182
Query: 97 EGHHRRVATSSWNHWNGHILTSGSKDKSI---------------INHDVRVSNNVTSCIK 141
+GH + + SW+ +IL + S D + H+ + S V S
Sbjct: 183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT 242
Query: 142 AHSGEVCGLKWSNEGNLLASGGDDNVVRIW-----ERSKMSSSKSLHRFTDHCGGVKALA 196
AH+G+V GL ++++G L + G DN +R+W E + ++ K + +
Sbjct: 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG 302
Query: 197 WSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFS 255
S I ++ V G I + + + + +E+ SG
Sbjct: 303 CSSE----FVFVP--YGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG---- 352
Query: 256 ASGDGNKLCLWKYPNMTKVGE-LQSSNSRILDLSQSPDGLTVATAGADE-TIRFW 308
S D N + W + E + + +P ++ +E W
Sbjct: 353 -SRDCN-ILAWV----PSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEGGTSAW 401
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 4e-30
Identities = 46/279 (16%), Positives = 94/279 (33%), Gaps = 41/279 (14%)
Query: 63 SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122
S + L + +S ++ E +K H + T G + SG D
Sbjct: 6 SARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSD 65
Query: 123 KSI------------INHDVRVSNNVTSCIKAHSGEVCGLKWS-NEGNLLASGGDDNVVR 169
I V + H V ++W ++ + S D ++
Sbjct: 66 GVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLK 125
Query: 170 IWERSKMSSSKSLHRFTDHCGGVKALAWSP--HQVNVLATGGGREDGCIKIWNVQKGTCI 227
+W+ +++ + V + SP + ++A G +++ +++ G+C
Sbjct: 126 VWD----TNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGT--RGPKVQLCDLKSGSCS 179
Query: 228 HGIDA-KAQICGLEWNRHHKEILSGHGFSASGDG--------------NKLCLWKYPNMT 272
H + + +I + W+ + IL+ +AS D L
Sbjct: 180 HILQGHRQEILAVSWSPRYDYILA----TASADSRVKLWDVRRASGCLITLDQHNGKKSQ 235
Query: 273 KVGE-LQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
V + N ++ L + DGL + T G D +R W +
Sbjct: 236 AVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS 274
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 2e-20
Identities = 22/164 (13%), Positives = 47/164 (28%), Gaps = 13/164 (7%)
Query: 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH----HRRVATSSWNHWNGHILT 117
+ ++ D L D++++LW++ + G ++ + +
Sbjct: 249 NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFV 308
Query: 118 SGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMS 177
+I + V S + +K H V + + L SG D + W
Sbjct: 309 FVPYGSTIAVYTVY-SGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW------ 361
Query: 178 SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV 221
D +P + E+G W+
Sbjct: 362 VPSLYEPVPDDDETTTKSQLNP-AFEDAWSSSD-EEGGTSAWSH 403
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 3e-33
Identities = 46/299 (15%), Positives = 93/299 (31%), Gaps = 40/299 (13%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W NG+ L G S+ K G D ++LWD + V +
Sbjct: 58 VWYSLNGERLGTLD--GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSP 115
Query: 100 H--RRVATSSWNHWNGHILTSGSKDKSIINHDVRV----SNNVTSCIKAHSGE------- 146
+RV S G+ + + + + ++ T + S E
Sbjct: 116 VPVKRVEFSP----CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT 171
Query: 147 ------VCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH 200
WS +G + +G D + ++ S ++ + + H + + +SP
Sbjct: 172 HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS--NNYEYVDSIDLHEKSISDMQFSPD 229
Query: 201 QVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGF------ 254
T D + +V + + + + I+ G G
Sbjct: 230 L-TYFITSSR--DTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVT 286
Query: 255 ---SASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ G + + ++G +Q + ++ SP G + A+ G D IR
Sbjct: 287 TTSANEGK-FEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHF 344
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 7e-30
Identities = 45/263 (17%), Positives = 89/263 (33%), Gaps = 39/263 (14%)
Query: 70 AKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHD 129
+ + S L+ + L GH R + +N G +L S SKD S
Sbjct: 2 GSSHHHHHHSSGENLYFQGSHMKAIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSA---- 56
Query: 130 VRVSNNVT-SCI---KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF 185
V ++ + H+G + + +G D +++W+ +S+ + + +
Sbjct: 57 -SVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD---VSNGQCVATW 112
Query: 186 TDHCGGVKALAWSPHQVNVLATGGGRE---DGCIKIWNVQKGTCIHGIDAKAQICGLEWN 242
VK + +SP N G I I+ +++ + H + ++ +
Sbjct: 113 KSP-VPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII 170
Query: 243 RHH--------------KEILSGHGFSASGDGNKLCLWKYPNMTKVGE-LQSSNSRILDL 287
H K I++G DG K+ + N + + + I D+
Sbjct: 171 THEGLDAATVAGWSTKGKYIIAG-----HKDG-KISKYDVSNNYEYVDSIDLHEKSISDM 224
Query: 288 SQSPDGLTVATAGADETIRFWEA 310
SPD T+ D +
Sbjct: 225 QFSPDLTYFITSSRDTNSFLVDV 247
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 7e-23
Identities = 36/216 (16%), Positives = 72/216 (33%), Gaps = 24/216 (11%)
Query: 32 VALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET-S 90
+ + + + D T WS K + G+ D K+ +D
Sbjct: 149 IERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY 208
Query: 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT-SCIKAHSGE--V 147
+ V +++ H + ++ ++ + + S+D + DV T +K + + +
Sbjct: 209 EYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVS-----TLQVLKKYETDCPL 262
Query: 148 CGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS-----------LHRFTDHCGGVKALA 196
+ + GG + S + R H G + +A
Sbjct: 263 NTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVA 322
Query: 197 WSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA 232
SP Q A+GG EDG I++ + +K D
Sbjct: 323 ISP-QGTSYASGG--EDGFIRLHHFEKSYFDFKYDV 355
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 7e-33
Identities = 53/269 (19%), Positives = 93/269 (34%), Gaps = 63/269 (23%)
Query: 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN---LEGHHRRVATSSWNHWNGHILTS 118
++W+ LA D ++++W E + EGH R V +W+ G+ L S
Sbjct: 20 WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLAS 78
Query: 119 GSKDKSIINHDVRV------SNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172
S D + + + ++ H EV + W+ GNLLA+ D V +WE
Sbjct: 79 ASFDATT-----CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Query: 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA 232
+ + + H VK + W P Q +LA+ D +K++ ++ +
Sbjct: 134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQ-ELLASAS--YDDTVKLYREEEDDWVCC--- 187
Query: 233 KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPD 292
L GH S + L+ P
Sbjct: 188 --------------ATLEGH----------------------------ESTVWSLAFDPS 205
Query: 293 GLTVATAGADETIRFWEAFGPSGDEDSVS 321
G +A+ D T+R W + P ++
Sbjct: 206 GQRLASCSDDRTVRIWRQYLPGNEQGVAC 234
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 9e-27
Identities = 47/294 (15%), Positives = 93/294 (31%), Gaps = 70/294 (23%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET---SKLVRNL 96
+WK + + + G ++ SV+W+ LA D + +W+ + + V L
Sbjct: 87 IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL 146
Query: 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV------SNNVTSCIKAHSGEVCGL 150
H + V W+ + +L S S D ++ ++ + ++ H V L
Sbjct: 147 NSHTQDVKHVVWHP-SQELLASASYDDTV-----KLYREEEDDWVCCATLEGHESTVWSL 200
Query: 151 KWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFT-------------DHCGGVKALAW 197
+ G LAS DD VRIW + + + + H + +AW
Sbjct: 201 AFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW 260
Query: 198 SPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSAS 257
LAT G D I+++ + + H
Sbjct: 261 CQLT-GALATACG--DDAIRVFQEDPNSDPQQPTFSLTA----------HLHQAH----- 302
Query: 258 GDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSP-DGLTVATAGADETIRFWEA 310
+ + ++ +P + +A+ D + FW+
Sbjct: 303 -----------------------SQDVNCVAWNPKEPGLLASCSDDGEVAFWKY 333
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 9e-14
Identities = 37/172 (21%), Positives = 53/172 (30%), Gaps = 49/172 (28%)
Query: 140 IKAHS-GEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWS 198
+ AH L W+ G LLAS G D +RIW S H V+ +AWS
Sbjct: 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS 70
Query: 199 PHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASG 258
P N LA+ D IW + L GH
Sbjct: 71 PCG-NYLASAS--FDATTCIWKKNQDDFECV-----------------TTLEGH------ 104
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ + ++ +P G +AT D+++ WE
Sbjct: 105 ----------------------ENEVKSVAWAPSGNLLATCSRDKSVWVWEV 134
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-32
Identities = 51/314 (16%), Positives = 109/314 (34%), Gaps = 57/314 (18%)
Query: 40 LWKWENGKVKKLLQVPGEDDYP--TSVSWSHDAKTLAVGYMDSKLQLWDAET-SKLVRNL 96
L++ ++G +K L ++ T + S + LA G L +W+ E V ++
Sbjct: 48 LYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSV 107
Query: 97 EGHHRRVATSSWNHW-----NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGE----- 146
+GH + + +GS+D ++ D R ++ + ++ GE
Sbjct: 108 KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167
Query: 147 ---VCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP--HQ 201
G ++ E ++ +G D+ +++++ + +L T+ GV +L +
Sbjct: 168 WTVAFGNAYNQEERVVCAGYDNGDIKLFDL----RNMALRWETNIKNGVCSLEFDRKDIS 223
Query: 202 VNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS------GHGFS 255
+N L +G +++++ G + H +
Sbjct: 224 MNKLVATSL--EGKFHVFDMRTQHPTKG------FASVSEKAHKSTVWQVRHLPQNRELF 275
Query: 256 ASGDGNK-LCLWKYPNMTK-------------------VGELQSSNSRILDLSQSPDGLT 295
+ G L LWKY + + + S I L SPD
Sbjct: 276 LTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG 335
Query: 296 VA-TAGADETIRFW 308
+ + D+T+R
Sbjct: 336 LCVCSSFDQTVRVL 349
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 4e-27
Identities = 41/308 (13%), Positives = 94/308 (30%), Gaps = 45/308 (14%)
Query: 56 GEDDYPTSVSWSHDAKTLAV----GYMDSKLQLWDAETSKLVRNLEGHHRR-------VA 104
G + W + +QL++ + L E + A
Sbjct: 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGA 75
Query: 105 TSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNE------GNL 158
TS L +G ++ ++ +K H + +
Sbjct: 76 TSL----QQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPE 131
Query: 159 LASGGDDNVVRIWE-RSKMSSSKSLHRFTDHCGG-----VKALAWSPHQVNVLATGGGRE 212
+ +G D V++W+ R K ++ A++ + V+ G +
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGY--D 188
Query: 213 DGCIKIWNVQKGTCIHGIDAKAQICGLEWNR---HHKEILSGHGFSASGDGNKLCLW--- 266
+G IK+++++ + K +C LE++R ++++ S +G K ++
Sbjct: 189 NGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVAT-----SLEG-KFHVFDMR 242
Query: 267 --KYPNMTKVGELQSSNSRILDLSQSPDGLTV-ATAGADETIRFWEAFGPSGDEDSVSHL 323
++ S + + P + TAG + W+ P S
Sbjct: 243 TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEG 302
Query: 324 AGLVSLKT 331
+ +
Sbjct: 303 IEMGVAGS 310
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 5e-22
Identities = 33/218 (15%), Positives = 68/218 (31%), Gaps = 33/218 (15%)
Query: 40 LWKWENGKVKKLLQVP--GEDDYP-----TSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92
+W P GE+ +++ + + + GY + ++L+D L
Sbjct: 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL 202
Query: 93 VRNLEGHHRRVATSSWNH--WNGHILTSGSKDKSIINHDVRVSNNV----TSCIKAHSGE 146
V + ++ + + L + S + D+R + + KAH
Sbjct: 203 RW-ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKST 261
Query: 147 VCGLKWSNEG-NLLASGGDDNVVRIW----------------ERSKMSSSKSLHRFTDHC 189
V ++ + L + G + +W E S L T
Sbjct: 262 VWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST 321
Query: 190 GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI 227
+ +L WSP + + D +++ V K I
Sbjct: 322 QPISSLDWSPDKRGLCVCSS--FDQTVRVLIVTKLNKI 357
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 1e-11
Identities = 28/190 (14%), Positives = 49/190 (25%), Gaps = 48/190 (25%)
Query: 141 KAHSGEVCGLKWSNEGNLLASGG----DDNVVRIWE-RSKMSSSKSLHRFTDHCGGVKAL 195
K + V KW + G V++++E +
Sbjct: 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFG 74
Query: 196 AWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFS 255
A S Q LATG G + IWN++ + GH
Sbjct: 75 ATSLQQ-RYLATGD--FGGNLHIWNLEAPEMPV------------------YSVKGHK-- 111
Query: 256 ASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSG 315
E+ ++ I L + T D T++ W+
Sbjct: 112 --------------------EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD 151
Query: 316 DEDSVSHLAG 325
++ + G
Sbjct: 152 PVANMEPVQG 161
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 2e-32
Identities = 63/296 (21%), Positives = 108/296 (36%), Gaps = 32/296 (10%)
Query: 40 LWKWENGKV--KKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET-------S 90
L + +L SV+W LA G DS + +W E
Sbjct: 38 LVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEM 97
Query: 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI---KAHSGEV 147
L+ +EGH V +W++ +G+ L + S+DKS+ + S CI + HS +V
Sbjct: 98 DLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV 156
Query: 148 CGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH-QVNVLA 206
+ W LLAS D+ VRIW + + + H G V + + V L
Sbjct: 157 KHVIWHPSEALLASSSYDDTVRIW-KDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215
Query: 207 TGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS------GHGFSASGDG 260
+G +D +++W + + + H +++ + G S D
Sbjct: 216 SGS--DDSTVRVWKYMGDDEDD--QQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGAD- 270
Query: 261 NKLCLWKY----PNMTKVGELQSSNSRILDLSQ-SPDGLTV-ATAGADETIRFWEA 310
L +++ + L I + +G T+ AT G D + FW
Sbjct: 271 GVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 7e-32
Identities = 63/325 (19%), Positives = 118/325 (36%), Gaps = 62/325 (19%)
Query: 45 NGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS----KLVRNLEGHH 100
+ + K L+ + S +S LA G D K++L + V + H
Sbjct: 3 SINLIKSLK--LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHK 58
Query: 101 RRVATSSWNHWNGHILTSGSKDKSII------NHDVRVSNNVTSCIKAHSGEVCGLKWSN 154
+ + + +W + +L +GS D ++ + D ++ + I+ H EV G+ WSN
Sbjct: 59 KAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN 117
Query: 155 EGNLLASGGDDNVVRIWERSKMSSS-KSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213
+G LA+ D V IWE + + + +H VK + W P + +LA+ D
Sbjct: 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE-ALLASSS--YD 174
Query: 214 GCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG-------FSASGDGNKLC-- 264
++IW C +L+GH F + +LC
Sbjct: 175 DTVRIWKDYDDD---------WECV--------AVLNGHEGTVWSSDFDKTEGVFRLCSG 217
Query: 265 -------LWKYPNMTKVGELQSS---------NSRILDLSQSPDGLTVATAGADETIRFW 308
+WKY + + + ++ +++ +G +A+ GAD + +
Sbjct: 218 SDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVY 276
Query: 309 EAFGPSGDEDSVSHLAGLVSLKTSV 333
E + L V V
Sbjct: 277 EEVDGEWKVFAKRALCHGVYEINVV 301
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 7e-22
Identities = 41/201 (20%), Positives = 74/201 (36%), Gaps = 20/201 (9%)
Query: 40 LWKWENGKVK-KLLQV-PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS--KLVRN 95
+W+ + + + + V V W LA D +++W + V
Sbjct: 133 IWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV 192
Query: 96 LEGHHRRVATSSWNHWNGHI--LTSGSKDKSI--------INHDVRVSNNVTSCIKAHSG 145
L GH V +S ++ + L SGS D ++ D + H
Sbjct: 193 LNGHEGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251
Query: 146 EVCGLKWSNEGNLLASGGDDNVVRIW-ERSKMSSSKSLHRFTDHCGGVKALAW-SPHQVN 203
+V + W G L+AS G D V+ ++ E + + + W +
Sbjct: 252 QVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKT 310
Query: 204 VLATGGGREDGCIKIWNVQKG 224
+LATGG +DG + W+++K
Sbjct: 311 ILATGG--DDGIVNFWSLEKA 329
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 4e-11
Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 176 MSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ 235
M+S + + + + +S +LATG D IK+ +V+
Sbjct: 1 MASINLIKSLKLYKEKIWSFDFSQ---GILATGST--DRKIKLVSVKYDDFTL------- 48
Query: 236 ICGLEWNRHHKEILS------GHGF-SASGDGNKLCLW-------KYPNMTKVGELQSSN 281
I L+ H K I S + S D + +W + M + ++
Sbjct: 49 IDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST-VSIWAKEESADRTFEMDLLAIIEGHE 107
Query: 282 SRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAG 325
+ + ++ S DG +AT D+++ WE + + +S L
Sbjct: 108 NEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE 151
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 3e-32
Identities = 60/302 (19%), Positives = 115/302 (38%), Gaps = 62/302 (20%)
Query: 40 LWKWENGKVKKLLQV---PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96
+WK + + G + + V S D + G D L+LWD T R
Sbjct: 65 MWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF 124
Query: 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC-----IKAHSGEVCGLK 151
GH + V + +++ + + SGS+DK+I ++ N + C ++HS V ++
Sbjct: 125 VGHTKDVLSVAFSS-DNRQIVSGSRDKTI-----KLWNTLGVCKYTVQDESHSEWVSCVR 178
Query: 152 WSNEG--NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209
+S ++ S G D +V++W +++ K H G + + SP ++ A+GG
Sbjct: 179 FSPNSSNPIIVSCGWDKLVKVWN---LANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGG 234
Query: 210 GREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG------FS------AS 257
+DG +W++ +G ++ L G FS +
Sbjct: 235 --KDGQAMLWDLNEGKHLY-------------------TLDGGDIINALCFSPNRYWLCA 273
Query: 258 GDGNKLCLW---------KYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
G + +W + ++ + L+ S DG T+ D +R W
Sbjct: 274 ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333
Query: 309 EA 310
+
Sbjct: 334 QV 335
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-27
Identities = 51/260 (19%), Positives = 89/260 (34%), Gaps = 34/260 (13%)
Query: 68 HDAKTLAVGYMDSKLQLWDA----ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK 123
H + G L+ E L L+GH+ V + ++ S S+DK
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDK 61
Query: 124 SII----NHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSS 179
+II D ++ HS V + S++G SG D +R+W+ +++
Sbjct: 62 TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD---LTTG 118
Query: 180 KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGL 239
+ RF H V ++A+S + +G D IK+WN +
Sbjct: 119 TTTRRFVGHTKDVLSVAFSSDN-RQIVSGS--RDKTIKLWNTLGV----------CKYTV 165
Query: 240 EWNRHHKEILS------GHGF---SASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQS 290
+ H + + S D + +W N + ++ S
Sbjct: 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWD-KLVKVWNLANCKLKTNHIGHTGYLNTVTVS 224
Query: 291 PDGLTVATAGADETIRFWEA 310
PDG A+ G D W+
Sbjct: 225 PDGSLCASGGKDGQAMLWDL 244
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 6e-18
Identities = 36/194 (18%), Positives = 67/194 (34%), Gaps = 16/194 (8%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKT--LAVGYMDSKLQLWDAETSKLVRNLE 97
LW K +Q ++ + V +S ++ + D +++W+ KL N
Sbjct: 154 LWNTLGVC-KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 212
Query: 98 GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157
GH + T + + +G + SG KD + D+ + + L +S
Sbjct: 213 GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLN-EGKHLYTLDGGD-IINALCFSPNRY 269
Query: 158 LLASGGDDNVVRIW------ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGR 211
L + ++IW ++ +LAWS L G
Sbjct: 270 WLCAA-TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGY-- 325
Query: 212 EDGCIKIWNVQKGT 225
D +++W V GT
Sbjct: 326 TDNLVRVWQVTIGT 339
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 1e-31
Identities = 43/283 (15%), Positives = 85/283 (30%), Gaps = 31/283 (10%)
Query: 39 FLWKWENGKVKKLLQ-----VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV 93
L+ +G + + ++WS D +A D +++W+ T K+
Sbjct: 215 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 274
Query: 94 RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWS 153
+ + R W L S S + I + ++ H+ + L S
Sbjct: 275 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE-LGSIDQVRYGHNKAITALSSS 333
Query: 154 NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213
+G L S + + W+ S S++ H + + + L T D
Sbjct: 334 ADGKTLFSADAEGHINSWDISTGISNRVFPD--VHATMITGIKTTSK--GDLFTVSW--D 387
Query: 214 GCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFS------ASGDGNKLCLWK 267
+K+ N+ + L S + + ++
Sbjct: 388 DHLKVVPAGGSGV--------DSSKAVANKLSSQPLGL-AVSADGDIAVAACYKHIAIYS 438
Query: 268 YPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ S NS + L S D VA G D + ++
Sbjct: 439 --HGKLTEVPISYNSSCVAL--SNDKQFVAVGGQDSKVHVYKL 477
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 2e-31
Identities = 39/272 (14%), Positives = 89/272 (32%), Gaps = 17/272 (6%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W KV+K + V G + + L + + + E + + GH
Sbjct: 265 IWNVATLKVEKTIPV-GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH 323
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
++ + S + +G L S + I + D+ + H+ + G+K +++G+L
Sbjct: 324 NKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 382
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219
DD+ +++ S LA S +A I I+
Sbjct: 383 TVSWDDH-LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD--GDIAVAAC--YKHIAIY 437
Query: 220 NVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE-LQ 278
+ K T + + + + + G D +K+ ++K +
Sbjct: 438 SHGKLT---EVPISYNSSCVALSNDKQFVAVG-----GQD-SKVHVYKLSGASVSEVKTI 488
Query: 279 SSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ I ++ S +G + + +
Sbjct: 489 VHPAEITSVAFSNNGAFLVATDQSRKVIPYSV 520
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 1e-30
Identities = 44/285 (15%), Positives = 82/285 (28%), Gaps = 37/285 (12%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE-- 97
+++ K K + SV ++ D A D + L++ E
Sbjct: 174 IFEGPPFKFKSTFG--EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD 231
Query: 98 -----GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKW 152
H V +W+ +G + S S DK+I +V + E L
Sbjct: 232 SLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 290
Query: 153 SNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE 212
L S + + H + AL+ S L +
Sbjct: 291 IWTKQALVSISANGFINFVN---PELGSIDQVRYGHNKAITALSSSADG-KTLFSAD--A 344
Query: 213 DGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFS------ASGDGNKLCLW 266
+G I W++ G + H +++G + + L +
Sbjct: 345 EGHINSWDISTGISNR-----------VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV 393
Query: 267 ---KYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
+ +S+ L L+ S DG +A A + I +
Sbjct: 394 PAGGSGVDSSKAVANKLSSQPLGLAVSADG-DIAVAACYKHIAIY 437
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 3e-30
Identities = 47/289 (16%), Positives = 95/289 (32%), Gaps = 49/289 (16%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
E G + ++ G + T++S S D KTL + + WD T R
Sbjct: 308 FVNPELGSIDQVRY--GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV 365
Query: 100 HRRVATSSWNHWNGHILTSGSKDKS-IINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNL 158
H + T G + T D ++ ++ + S + GL S +G++
Sbjct: 366 HATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDI 425
Query: 159 LASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKI 218
+ + + I+ S K + +A S + +A GG +D + +
Sbjct: 426 AVAACYKH-IAIY-----SHGKLTEVPISY--NSSCVALSNDK-QFVAVGG--QDSKVHV 474
Query: 219 WNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG-------FS------ASGDGNK-LC 264
+ + + H FS + D ++ +
Sbjct: 475 YKLSGASVSE------------------VKTIVHPAEITSVAFSNNGAFLVATDQSRKVI 516
Query: 265 LWKYPNMTKVGELQSS---NSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ N ++ S +++ +S SPD + +AT D ++ W
Sbjct: 517 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 6e-30
Identities = 40/270 (14%), Positives = 79/270 (29%), Gaps = 56/270 (20%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+ +G P ++ S D + ++ KL +
Sbjct: 393 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYS--HGKLTEVPISY 449
Query: 100 HRR-VATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNL 158
+ VA S+ + + G +D + + + ++ H E+ + +SN G
Sbjct: 450 NSSCVALSN----DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF 505
Query: 159 LASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKI 218
L + V + + + +T H V ++WSP LATG D + +
Sbjct: 506 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN-VRLATGS--LDNSVIV 562
Query: 219 WNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ 278
WN+ K + + H ++
Sbjct: 563 WNMNKPSDH---------PIIIKGAHAMSSVNS--------------------------- 586
Query: 279 SSNSRILDLSQSPDGLTVATAGADETIRFW 308
+ T+ +AG D I+FW
Sbjct: 587 ---------VIWLNETTIVSAGQDSNIKFW 607
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 44/299 (14%), Positives = 88/299 (29%), Gaps = 38/299 (12%)
Query: 30 LAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET 89
+ G ++ + ++ T S A G + +++WD
Sbjct: 33 IQYCNGTSVYTVPVGSLTDTEIYT--EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ 90
Query: 90 SK--LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV----SNNVTSCIKAH 143
+ L + V SW+ + + + + V + +
Sbjct: 91 TTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERF---GHVFLFDTGTSNGNLTGQ 146
Query: 144 SGEVCGLKWSNEGNL-LASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP--- 199
+ + + + + SG DDN V I+E K F +H V ++ ++P
Sbjct: 147 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEG---PPFKFKSTFGEHTKFVHSVRYNPDGS 203
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS------GHG 253
A+ G DG I ++N GT + + + H + G
Sbjct: 204 L----FASTG--GDGTIVLYNGVDGTKTGVFEDDSL----KNVAHSGSVFGLTWSPDGTK 253
Query: 254 F-SASGDGNKLCLWKYPNMTKVGELQSSNS-RILDLSQSPDGLTVATAGADETIRFWEA 310
SAS D + +W + + L + + A+ I F
Sbjct: 254 IASASAD-KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 311
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 6e-26
Identities = 39/185 (21%), Positives = 80/185 (43%), Gaps = 12/185 (6%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN-LEG 98
+ + +GK+ ++ + V+ S+D + +AVG DSK+ ++ + +
Sbjct: 434 IAIYSHGKLTEVP----ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV 489
Query: 99 HHRRVATSSWNHWNGHILTSGSKDKSIINHDV--RVSNNVTSCIKAHSGEVCGLKWSNEG 156
H + + ++++ NG L + + + +I + V T+ H+ +V + WS +
Sbjct: 490 HPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN 548
Query: 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCI 216
LA+G DN V +W +K S + H ++ + + G +D I
Sbjct: 549 VRLATGSLDNSVIVWNMNK-PSDHPIIIKGAHAMSSVNSVIWLNE-TTIVSAG--QDSNI 604
Query: 217 KIWNV 221
K WNV
Sbjct: 605 KFWNV 609
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 2e-31
Identities = 42/286 (14%), Positives = 94/286 (32%), Gaps = 24/286 (8%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDAET--SKLVRNL 96
LW ++ +Q G D T + ++ + L V + L D ++
Sbjct: 100 LWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKT 159
Query: 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156
+ + + +L +G ++ + + K H +V +++
Sbjct: 160 DSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD--GHEIFKEKLHKAKVTHAEFNPRC 216
Query: 157 -NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215
L+A+ D V++W+ + S H V A ++P L T +
Sbjct: 217 DWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTD--QRNE 274
Query: 216 IKIWNVQKGTCIHGIDAKAQICGLE-------WNRHHKEILSG----HGFSASGDGNKLC 264
I++++ + I W+ + I++G + +
Sbjct: 275 IRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDK-RTID 333
Query: 265 LWKYPNMTKVGELQ--SSNSRILDLSQSPDGLTVATAGADETIRFW 308
++ + V +L+ ++ I SP G +A+ G I W
Sbjct: 334 IYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS-GMGFNILIW 378
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 9e-27
Identities = 46/277 (16%), Positives = 92/277 (33%), Gaps = 19/277 (6%)
Query: 43 WENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY--MDSKLQLWDAETSKLVRNLEGHH 100
++ G + G+ + S +++ + + ++ KL R
Sbjct: 14 FQGGGRTGGQKKVGQTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASPFD 73
Query: 101 RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN-NVTSCIKAHSGEVCGLKWS-NEGNL 158
RRV + W+ + + GSK II D V N + G+K++ N
Sbjct: 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ 133
Query: 159 LASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKI 218
L + + S S + + + S + +LATG G + +
Sbjct: 134 LFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDS--TGRLLL 189
Query: 219 WNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL 277
+ G I KA++ E+N +++ ++S D + LW N+
Sbjct: 190 LGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMA----TSSVDAT-VKLWDLRNIKDKNSY 243
Query: 278 QS---SNSRILDLSQSP-DGLTVATAGADETIRFWEA 310
+ + +P D + T IR + +
Sbjct: 244 IAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSS 280
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 2e-14
Identities = 32/194 (16%), Positives = 65/194 (33%), Gaps = 27/194 (13%)
Query: 49 KKLLQVPGEDDYPTSVSWSHDAKTL-AVGYMDSKLQLWDAETSKLVRNL---EGHHRRVA 104
++ + T ++ L A +D+ ++LWD K + H + V
Sbjct: 195 HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVN 254
Query: 105 TSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT-----SCIKAHSGEVCGLKWSNEGNLL 159
+ +N + L + + I + + + W +L+
Sbjct: 255 AAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLI 314
Query: 160 ASGG---------DDNVVRIWERSKMSSSKSLHRFTDHC--GGVKALAWSPHQVNVLATG 208
+G D + I++ +S +H+ D G + +SP +VLA+G
Sbjct: 315 VAGRYPDDQLLLNDKRTIDIYD---ANSGGLVHQLRDPNAAGIISLNKFSPTG-DVLASG 370
Query: 209 GGREDGCIKIWNVQ 222
I IWN +
Sbjct: 371 M---GFNILIWNRE 381
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 19/178 (10%), Positives = 38/178 (21%), Gaps = 53/178 (29%)
Query: 143 HSGEVCGLKWSNEGNLLASGGD--DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH 200
+ + + S+ G + + I + S K + V +L W P
Sbjct: 28 QTSILHYIYKSSLGQSIHAQLRQCLQEPFIRS---LKSYKLHRTASPFDRRVTSLEWHPT 84
Query: 201 QVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDG 260
+A G + G I +W+ I G G
Sbjct: 85 HPTTVAVGS--KGGDIILWDYDVQNKTSFIQ-----------------GMGPG------- 118
Query: 261 NKLCLWKYPNMTKVGELQSSNSRILDLSQSP-DGLTVATAGADETIRFWEAFGPSGDE 317
I + + + + + + G
Sbjct: 119 ---------------------DAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQV 155
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 2e-31
Identities = 55/300 (18%), Positives = 96/300 (32%), Gaps = 64/300 (21%)
Query: 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK--LVRNLEGHHRRVATSSWNH-WN 112
+D + LA D ++++D L+ +L GH V +W H
Sbjct: 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMY 70
Query: 113 GHILTSGSKDKSIINHDVRVSNNV-TSCIKAHSGEVCGLKWS--NEGNLLASGGDDNVVR 169
G+IL S S D+ +I + H V + W+ + G +LA G D +
Sbjct: 71 GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAIS 130
Query: 170 IWERSKMSSSKSLHRFTDHCGGVKALAWSP----------------HQVNVLATGGGRED 213
+ + + H G A++W+P + + A+GG D
Sbjct: 131 LLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG--CD 188
Query: 214 GCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG-------F------------ 254
IK+W ++ + L H +
Sbjct: 189 NLIKLWKEEEDGQWKEE----------------QKLEAHSDWVRDVAWAPSIGLPTSTIA 232
Query: 255 SASGDGNKLCLWKY----PNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
S S DG ++ +W N L N + +S S +A +G D + W+
Sbjct: 233 SCSQDG-RVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 1e-19
Identities = 38/187 (20%), Positives = 64/187 (34%), Gaps = 30/187 (16%)
Query: 40 LWKWENGKVKKLLQVP-GEDDYPTSVSWSHD-----------------AKTLAVGYMDSK 81
L + ++ ++ +VSW+ K A G D+
Sbjct: 131 LLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNL 190
Query: 82 LQLWDAETS---KLVRNLEGHHRRVATSSW---NHWNGHILTSGSKDKSIINHDVRVSNN 135
++LW E K + LE H V +W + S S+D + +++
Sbjct: 191 IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS 250
Query: 136 VTSCIK---AHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGV 192
T K + V + WS N+LA G DN V +W K S +D G
Sbjct: 251 NTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW---KESVDGQWVCISDVNKGQ 307
Query: 193 KALAWSP 199
+++ S
Sbjct: 308 GSVSASV 314
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 2e-31
Identities = 41/258 (15%), Positives = 81/258 (31%), Gaps = 47/258 (18%)
Query: 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETSK--LVRNLEGHHRRVATSSWNHWNGHILTSG 119
+ +W+ D +A+ + ++ +++ +K V L+ H+ +V W + + + +
Sbjct: 12 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTC 70
Query: 120 SKDKSIINHDVRV------SNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE- 172
D++ V + T I + ++W+ A G V+ I
Sbjct: 71 GTDRNA-----YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 125
Query: 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA 232
+ H V +L W P+ V +LA G D +I++
Sbjct: 126 EQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGS--CDFKCRIFSAYIKEVE----- 177
Query: 233 KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPD 292
K P + E SS + + S +
Sbjct: 178 ------------------------ERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 213
Query: 293 GLTVATAGADETIRFWEA 310
G VA D T+ +A
Sbjct: 214 GSRVAWVSHDSTVCLADA 231
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-30
Identities = 47/330 (14%), Positives = 86/330 (26%), Gaps = 63/330 (19%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS--KLVRNLE 97
+++ K ++ ++ + T V W+ D+ + D +W + K +
Sbjct: 34 IYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL 93
Query: 98 GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI---KAHSGEVCGLKWSN 154
+R W N GS + I N+ C K V L W
Sbjct: 94 RINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 152
Query: 155 EGNLLASGGDDNVVRIWE---------------RSKMSSSKSLHRFTDHCGGVKALAWSP 199
LLA+G D RI+ SKM + + + CG V + +S
Sbjct: 153 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 212
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCI-----HG------------------------- 229
+ + +A D + + + K +
Sbjct: 213 NG-SRVAWVS--HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVL 269
Query: 230 IDAKAQICGLEWNRHHKEILSGHGFSASGD---GNKLCLWKYPNMTKVGELQSS--NSRI 284
+ L + + N G S + +
Sbjct: 270 FTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSV 329
Query: 285 LDLSQSPDG----LTVATAGADETIRFWEA 310
+S G T G D + W+
Sbjct: 330 SQISVLSGGKAKCSQFCTTGMDGGMSIWDV 359
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 8e-19
Identities = 27/194 (13%), Positives = 55/194 (28%), Gaps = 16/194 (8%)
Query: 35 GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR 94
P + K G++ + V +S + +A DS + L DA+ V
Sbjct: 181 APTPWGSKMPFGELMFESS--SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA 238
Query: 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN 154
L + ++ ++ +G ++ + S
Sbjct: 239 TLASETLPLLAVTFIT-ESSLVAAGHDCFPVL-FTYDSAAGKLS-FGGRLDVPKQSSQRG 295
Query: 155 EGNLLASGG-DDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP---HQVNVLATGGG 210
D + + SLH+ V ++ + + T G
Sbjct: 296 LTARERFQNLDKKASSEGSAAAGAGLDSLHK-----NSVSQISVLSGGKAKCSQFCTTG- 349
Query: 211 REDGCIKIWNVQKG 224
DG + IW+V+
Sbjct: 350 -MDGGMSIWDVRSL 362
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 2e-12
Identities = 26/191 (13%), Positives = 51/191 (26%), Gaps = 49/191 (25%)
Query: 143 HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQV 202
+ W+ + +A +++ V I+E+S + +H +H G V + W+P
Sbjct: 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDS- 64
Query: 203 NVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNK 262
N + T G D +W ++ T L R ++
Sbjct: 65 NRIVTCG--TDRNAYVWTLKGRT---------WKPTLVILRINRAARC------------ 101
Query: 263 LCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSH 322
W +P+ A I +
Sbjct: 102 -VRW-----------------------APNEKKFAVGSGSRVISICYFEQENDWWVCKHI 137
Query: 323 LAGLVSLKTSV 333
+ S S+
Sbjct: 138 KKPIRSTVLSL 148
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 2e-31
Identities = 35/269 (13%), Positives = 79/269 (29%), Gaps = 39/269 (14%)
Query: 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETS--KLVRNLEGHHRRVATSSWNHWNGHILTSG 119
+++ ++++L++ + + K R H + V W + + +
Sbjct: 15 YEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-KSNRIVTC 73
Query: 120 SKDKSII--NHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE-RSKM 176
S+D++ + T + + ++WS + A G V+ + +
Sbjct: 74 SQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN 133
Query: 177 SSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQI 236
S H + +L W P+ V +LA G D + +
Sbjct: 134 DWWVSKHLKRPLRSTILSLDWHPNNV-LLAAGC--ADRKAYVLSAYVRDVDAK------- 183
Query: 237 CGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTV 296
+ + N +C S + + SP G +
Sbjct: 184 ------------PEASVWGSRLPFNTVCA-----------EYPSGGWVHAVGFSPSGNAL 220
Query: 297 ATAGADETIRFWEAFGPSGDEDSVSHLAG 325
A AG D ++ P ++ +
Sbjct: 221 AYAGHDSSVTIAYPSAPEQPPRALITVKL 249
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 1e-26
Identities = 47/318 (14%), Positives = 84/318 (26%), Gaps = 39/318 (12%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS---KLVRNL 96
L++ + K D T V W+ + + D +++ K L
Sbjct: 37 LYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL 96
Query: 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI---KAHSGEVCGLKWS 153
+R W N GS + I N+ + + L W
Sbjct: 97 LRLNRAATFVRW-SPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWH 155
Query: 154 NEGNLLASGGDDNVVRIWER--------------SKMSSSKSLHRFTDHCGGVKALAWSP 199
LLA+G D + ++ G V A+ +SP
Sbjct: 156 PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSP 215
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFS---- 255
N LA G D + I + + + S ++
Sbjct: 216 SG-NALAYAGH--DSSVTIAYPSAP-------EQPPRALITVKLSQLPLRSLL-WANESA 264
Query: 256 --ASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313
A+G L + N + + ++ S + G T + + F
Sbjct: 265 IVAAGYNYSPILLQG-NESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRST 323
Query: 314 SGDEDSVSHLAGLVSLKT 331
+ D + SL T
Sbjct: 324 FRNMDLKGSSQSISSLPT 341
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 4e-20
Identities = 49/298 (16%), Positives = 88/298 (29%), Gaps = 39/298 (13%)
Query: 44 ENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS----KLVRNLEGH 99
+G K+ L + + T V WS + AVG + + E
Sbjct: 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL 145
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSI-----------INHDVRVSN-----NVTSCIKAH 143
+ + W+ N +L +G D+ + V N
Sbjct: 146 RSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPS 204
Query: 144 SGEVCGLKWSNEGNLLASGGDDNVVRIWERSK-MSSSKSLHRFTDHCGGVKALAWSPHQV 202
G V + +S GN LA G D+ V I S ++L +++L W+
Sbjct: 205 GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES- 263
Query: 203 NVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNK 262
++A G + + + H D A +
Sbjct: 264 AIVAAGY---NYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTAL 320
Query: 263 LCLWKYPNMTKVGELQSSNSR----------ILDLSQSPDGLT-VATAGADETIRFWE 309
++ NM G QS +S + + +P +T ++G D + W
Sbjct: 321 RSTFR--NMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 5e-19
Identities = 33/199 (16%), Positives = 64/199 (32%), Gaps = 29/199 (14%)
Query: 137 TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALA 196
H+ ++++ + N V ++E+ + K F+DH V +
Sbjct: 11 PKPSYEHA-------FNSQRTEFVTTTATNQVELYEQDG-NGWKHARTFSDHDKIVTCVD 62
Query: 197 WSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS------ 250
W+P N + T +D ++ + L R ++
Sbjct: 63 WAPKS-NRIVTCS--QDRNAYVYEKRPD--------GTWKQTLVLLRLNRAATFVRWSPN 111
Query: 251 GHGF-SASGDGN-KLCLWKYPNMTKVGE--LQSSNSRILDLSQSPDGLTVATAGADETIR 306
F SG +C ++ N V + + S IL L P+ + +A AD
Sbjct: 112 EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAY 171
Query: 307 FWEAFGPSGDEDSVSHLAG 325
A+ D + + G
Sbjct: 172 VLSAYVRDVDAKPEASVWG 190
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 1e-12
Identities = 20/188 (10%), Positives = 59/188 (31%), Gaps = 25/188 (13%)
Query: 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS----KLVRNLEGHHRRVATS 106
+ + +V +S LA DS + + + + ++ + +
Sbjct: 198 VCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSL 257
Query: 107 SWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN 166
W + I+ +G I+ ++ + + + + +++ GN ++
Sbjct: 258 LWAN-ESAIVAAGYNYSPIL---LQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEG 313
Query: 167 VVRIWERSKMSSS-------------KSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213
V + ++H+ ++ A +P + + G D
Sbjct: 314 PVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIAT--LRPYAGTPGNITAFTSSGT--D 369
Query: 214 GCIKIWNV 221
G + +W +
Sbjct: 370 GRVVLWTL 377
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 5e-31
Identities = 53/318 (16%), Positives = 100/318 (31%), Gaps = 79/318 (24%)
Query: 40 LWKWENGKVKKLLQVP-----GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR 94
+WK + +P G + + + ++ S + D L+LWD T +
Sbjct: 53 IWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK 112
Query: 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC------IKAHSGEV- 147
GH V + +++ + + S ++ I ++ N + C + HS V
Sbjct: 113 RFVGHQSEVYSVAFSP-DNRQILSAGAEREI-----KLWNILGECKFSSAEKENHSDWVS 166
Query: 148 ---------CGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWS 198
K AS G D +++W ++ + + F H V L+ S
Sbjct: 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN----TNFQIRYTFKAHESNVNHLSIS 222
Query: 199 PHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG----- 253
P +ATGG D + IW++ T G
Sbjct: 223 P-NGKYIATGGK--DKKLLIWDILNLTYPQ-------------------REFDAGSTINQ 260
Query: 254 --FS------ASGDGNKLCLW-------------KYPNMTKVGELQSSNSRILDLSQSPD 292
F+ A G + ++ + +TK + N + L+ +
Sbjct: 261 IAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNAL 320
Query: 293 GLTVATAGADETIRFWEA 310
G + D IR +
Sbjct: 321 GKKLFAGFTDGVIRTFSF 338
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 1e-23
Identities = 51/281 (18%), Positives = 90/281 (32%), Gaps = 56/281 (19%)
Query: 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-------KLVRNLEGHHRRVATSSWNHWN 112
S + D+ L G D + +W + L GH+ V+ + +
Sbjct: 29 AGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-E 87
Query: 113 GHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172
S S DK++ D+R + H EV + +S + + S G + +++W
Sbjct: 88 NCFAISSSWDKTLRLWDLR-TGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
Query: 173 RSKMSSSKSLHRFTDHCGGVKALAWSP---------HQVNVLATGGGREDGCIKIWNVQK 223
S +H V + +SP A+ G DG +K+WN
Sbjct: 147 I-LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG--WDGRLKVWNTN- 202
Query: 224 GTCIHGIDAKAQICGLEWNRHHKEILSGHG-------FS------ASG-DGNKLCLWKYP 269
+ H S A+G KL +W
Sbjct: 203 FQIRY-------------------TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL 243
Query: 270 NMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
N+T + S I ++ +P VA G D+ ++ +
Sbjct: 244 NLTYPQREFDAGSTINQIAFNPKLQWVA-VGTDQGVKIFNL 283
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 1e-21
Identities = 52/261 (19%), Positives = 90/261 (34%), Gaps = 51/261 (19%)
Query: 79 DSKLQLWDAETSKLVRNLEGHHRRV---ATSSWNHW--NGHILTSGSKDKSII------N 127
+S L + + LEGH V + +L SGS+DK+++
Sbjct: 4 NSSLDIQVVKRGI----LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEE 59
Query: 128 HDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD 187
+ H+ V L S E S D +R+W+ + + + RF
Sbjct: 60 EQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWD---LRTGTTYKRFVG 116
Query: 188 HCGGVKALAWSP--HQVNVLATGGGREDGCIKIWNVQKGTCIHGI--------------- 230
H V ++A+SP Q + + G + IK+WN+
Sbjct: 117 HQSEVYSVAFSPDNRQ---ILSAG--AEREIKLWNILGECKFSSAEKENHSDWVSCVRYS 171
Query: 231 -DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQ 289
K+ + + S D +L +W N ++ S + LS
Sbjct: 172 PIMKSANKVQPFAPY---FASV-----GWD-GRLKVWN-TNFQIRYTFKAHESNVNHLSI 221
Query: 290 SPDGLTVATAGADETIRFWEA 310
SP+G +AT G D+ + W+
Sbjct: 222 SPNGKYIATGGKDKKLLIWDI 242
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 2e-16
Identities = 33/205 (16%), Positives = 67/205 (32%), Gaps = 27/205 (13%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKT----------LAVGYMDSKLQLWDAET 89
LW + D+ + V +S K+ A D +L++W+
Sbjct: 144 LWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF 203
Query: 90 SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCG 149
++ + H V S + NG + +G KDK ++ D+ + +
Sbjct: 204 -QIRYTFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDIL-NLTYPQREFDAGSTINQ 260
Query: 150 LKWSNEGNLLASGGDDNVVRIWE----------RSKMSSSKSLHRFTDHCGGVKALAWSP 199
+ ++ + +A G D V+I+ + +LAW+
Sbjct: 261 IAFNPKLQWVAVGTD-QGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA 319
Query: 200 HQVNVLATGGGREDGCIKIWNVQKG 224
L G DG I+ ++ +
Sbjct: 320 LG-KKLFAGF--TDGVIRTFSFETS 341
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 3e-13
Identities = 34/203 (16%), Positives = 59/203 (29%), Gaps = 65/203 (32%)
Query: 120 SKDKSIINHDVRVSNNVTSCIKAHSGEVC------GLKWSNEGNLLASGGDDNVVRIWE- 172
+ + S+ + ++ HS V K + + +L SG D V IW+
Sbjct: 2 ADNSSL-----DIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKL 56
Query: 173 ---RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHG 229
T H V LA S + + D +++W+++ GT
Sbjct: 57 YEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSS--WDKTLRLWDLRTGTTYK- 112
Query: 230 IDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQ 289
GH S + ++
Sbjct: 113 ------------------RFVGH----------------------------QSEVYSVAF 126
Query: 290 SPDGLTVATAGADETIRFWEAFG 312
SPD + +AGA+ I+ W G
Sbjct: 127 SPDNRQILSAGAEREIKLWNILG 149
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 11/63 (17%)
Query: 40 LWKWENGKVKKLLQVP-----------GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE 88
++ + + G++ TS++W+ K L G+ D ++ + E
Sbjct: 280 IFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE 339
Query: 89 TSK 91
TS
Sbjct: 340 TSA 342
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 2e-30
Identities = 60/291 (20%), Positives = 95/291 (32%), Gaps = 29/291 (9%)
Query: 39 FLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK-LVRNLE 97
L K + + D L+ L+ W L
Sbjct: 59 LLISENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLR 118
Query: 98 GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157
GH V T + + +G+ DK I +D + + H G V LK+++ G
Sbjct: 119 GHMTSVITCLQFE--DNYVITGADDKMIRVYDSI-NKKFLLQLSGHDGGVWALKYAH-GG 174
Query: 158 LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKAL--AWSPHQVNVLATGGGREDGC 215
+L SG D VR+W+ + H F H V+ L + + TG D
Sbjct: 175 ILVSGSTDRTVRVWD---IKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGS--RDNT 228
Query: 216 IKIWNVQKGTCI----HGIDAKAQICGLEWNRHHKEILSGHG---FSASGDGNKL----- 263
+ +W + K + + D E N + +L GH + SG GN +
Sbjct: 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 288
Query: 264 ----CLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+W M + L RI + +A D TIR W+
Sbjct: 289 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 1e-19
Identities = 36/187 (19%), Positives = 67/187 (35%), Gaps = 22/187 (11%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W K +L G D S + H+ K MD+ +++WD E +L+ L+GH
Sbjct: 294 VWDVAQMKCLYILS--GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 351
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA---HSGEVCGLKWSNEG 156
V + L S + D SI R + K H+ +
Sbjct: 352 TALVGLLR---LSDKFLVSAAADGSI-----RGWDANDYSRKFSYHHTNLSAITTFYVSD 403
Query: 157 NLLASGGDDNVVRIWERSKMSSSKSLHR-FTDHCGGVKALAWSPHQVNVLATGGGREDG- 214
N+L SG ++ I+ + S K +H + ++ + L ++
Sbjct: 404 NILVSGSENQ-FNIYN---LRSGKLVHANILKDADQIWSVNFKGKT---LVAAVEKDGQS 456
Query: 215 CIKIWNV 221
++I +
Sbjct: 457 FLEILDF 463
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 2e-19
Identities = 36/298 (12%), Positives = 75/298 (25%), Gaps = 92/298 (30%)
Query: 40 LWKWENGKVKKLLQVPGEDD--YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97
+W + G + + G + + + K + G D+ L +W V
Sbjct: 187 VWDIKKGCCTHVFE--GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP-DH 243
Query: 98 GHHRRVATSSWNHW---------------------NGHILTSGSKDKSIINHDVRVSNNV 136
G +G+I+ SGS D ++ V +
Sbjct: 244 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL-----IVWDVA 298
Query: 137 T-SCIKA---HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGV 192
C+ H+ + + +E S D +RIW+ + + + ++ H V
Sbjct: 299 QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD---LENGELMYTLQGHTALV 355
Query: 193 KALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGH 252
L S L + DG I+ W+ + H
Sbjct: 356 GLLRLSD---KFLVSAA--ADGSIRGWDANDYSRKF--------------------SYHH 390
Query: 253 GFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ + + + G++ +
Sbjct: 391 T----------------------------NLSAITTFYVSDNILVS-GSENQFNIYNL 419
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 3e-19
Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 20/169 (11%)
Query: 65 SWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKS 124
+ S + G D+ L +WD K + L GH R+ ++ ++H S S D +
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTT 333
Query: 125 IINHDVRVSNNVT-SCI---KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSK 180
I R+ + + + H+ V L+ S L S D +R W+ + S
Sbjct: 334 I-----RIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF 386
Query: 181 SLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHG 229
S H H + N+L +G + I+N++ G +H
Sbjct: 387 SYH----HTNLSAITTFYVSD-NILVSGS---ENQFNIYNLRSGKLVHA 427
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 3e-13
Identities = 33/217 (15%), Positives = 63/217 (29%), Gaps = 42/217 (19%)
Query: 110 HWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVR 169
+WN I S S K ++ + VS + + + + L+ + +++
Sbjct: 44 NWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFILK 103
Query: 170 IWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHG 229
W K H V + TG +D I++++ +
Sbjct: 104 NWYNPK--FVPQRTTLRGHMTSVITCLQFEDN--YVITGA--DDKMIRVYDSINKKFLL- 156
Query: 230 IDAKAQICGLEWNRHHKEILSGHG--------------FSASGDGNKLCLWKYPNMTKVG 275
LSGH S S D + +W
Sbjct: 157 ------------------QLSGHDGGVWALKYAHGGILVSGSTD-RTVRVWDIKKGCCTH 197
Query: 276 ELQ--SSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ +S R LD+ + + + T D T+ W+
Sbjct: 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 3e-30
Identities = 60/318 (18%), Positives = 109/318 (34%), Gaps = 84/318 (26%)
Query: 40 LWKWEN-----GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR 94
LWK G ++ L G + V S D + G D +L+LWD R
Sbjct: 409 LWKLTKDDKAYGVAQRRLT--GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR 466
Query: 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA-------HSGEV 147
GH + V + +++ + + S S+D++I ++ N + C H V
Sbjct: 467 RFVGHTKDVLSVAFSL-DNRQIVSASRDRTI-----KLWNTLGECKYTISEGGEGHRDWV 520
Query: 148 CGLKWSNEGN--LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP---HQV 202
+++S + S D V++W +S+ K H G V +A SP
Sbjct: 521 SCVRFSPNTLQPTIVSASWDKTVKVWN---LSNCKLRSTLAGHTGYVSTVAVSPDGSL-- 575
Query: 203 NVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG------FS- 255
A+GG +DG + +W++ +G ++ L + FS
Sbjct: 576 --CASGG--KDGVVLLWDLAEGKKLY-------------------SLEANSVIHALCFSP 612
Query: 256 -----ASGDGNKLCLW-------------------KYPNMTKVGELQSSNSRILDLSQSP 291
+ + + +W + + + + L+ S
Sbjct: 613 NRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA 672
Query: 292 DGLTVATAGADETIRFWE 309
DG T+ + D IR W
Sbjct: 673 DGSTLFSGYTDGVIRVWG 690
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 60/296 (20%), Positives = 101/296 (34%), Gaps = 47/296 (15%)
Query: 38 LFLWKWENGKVKKLLQVPGED-DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96
+ + G++ + + + + V + Q A L +
Sbjct: 319 ATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTM 378
Query: 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT-SCIKA---HSGEVCGLKW 152
H V + N I+ S S+DKSII + + + HS V +
Sbjct: 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVL 438
Query: 153 SNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP--HQVNVLATGGG 210
S++G SG D +R+W+ +++ S RF H V ++A+S Q + +
Sbjct: 439 SSDGQFALSGSWDGELRLWD---LAAGVSTRRFVGHTKDVLSVAFSLDNRQ---IVSASR 492
Query: 211 REDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG-------FS-------- 255
D IK+WN G C + I E GH FS
Sbjct: 493 --DRTIKLWNT-LGECKYTI---------------SEGGEGHRDWVSCVRFSPNTLQPTI 534
Query: 256 ASGDGNK-LCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
S +K + +W N L + ++ SPDG A+ G D + W+
Sbjct: 535 VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 4e-20
Identities = 37/279 (13%), Positives = 84/279 (30%), Gaps = 59/279 (21%)
Query: 39 FLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEG 98
FL + + L+ +D +V+ + LA + +A+ +++ N+
Sbjct: 279 FLENYLLTD--EGLEAVNKDKPLGAVALKSYEEELAKDPRI-AATMENAQKGEIMPNIPQ 335
Query: 99 HHRRV--ATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWS-NE 155
++ + T + + + ++AH+ V + +
Sbjct: 336 MSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLK-GTMRAHTDMVTAIATPIDN 394
Query: 156 GNLLASGGDDNVVRIW--ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213
+++ S D + +W + + + R T H V+ + S +G D
Sbjct: 395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-QFALSGSW--D 451
Query: 214 GCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273
G +++W++ G GH
Sbjct: 452 GELRLWDLAAGVSTR-------------------RFVGH--------------------- 471
Query: 274 VGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312
+L ++ S D + +A D TI+ W G
Sbjct: 472 -------TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG 503
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 1e-16
Identities = 40/199 (20%), Positives = 79/199 (39%), Gaps = 33/199 (16%)
Query: 46 GKVKKLLQVPGE--DDYPTSVSWSHD--AKTLAVGYMDSKLQLWDAETSKLVRNLEGHHR 101
G+ K + GE D+ + V +S + T+ D +++W+ KL L GH
Sbjct: 503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG 562
Query: 102 RVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLAS 161
V+T + + +G + SG KD ++ D+ + S ++A+S + L +S L +
Sbjct: 563 YVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYS-LEANS-VIHALCFSPNRYWLCA 619
Query: 162 GGDDNVVRIW----------------ERSKMSSSKSLHRFTDHCGGVKALAWSP---HQV 202
+ + ++IW ++ + + +L WS
Sbjct: 620 ATE-HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGST-- 676
Query: 203 NVLATGGGREDGCIKIWNV 221
L +G DG I++W +
Sbjct: 677 --LFSGY--TDGVIRVWGI 691
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 6e-30
Identities = 48/296 (16%), Positives = 103/296 (34%), Gaps = 52/296 (17%)
Query: 40 LWKWENGKVKKLLQV---PGEDDYPTSVSWSHDAKT----LAVGYMDSKLQLWDAETSKL 92
L++ + +LLQ D+ + +W++D+ T LAV +++ + T +
Sbjct: 48 LYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC 107
Query: 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSII--NHDVRVSNNVTSCIKAHSGEVCGL 150
+++ GH + ++ + ++L S SKD ++ N + ++ H EV
Sbjct: 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 167
Query: 151 KWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210
+ G + S G D+ +++W ++S + ++ + ++P+
Sbjct: 168 DYDLLGEKIMSCGMDHSLKLWR---INSKRMMNAIKES------YDYNPN-KTNRPFI-- 215
Query: 211 REDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK--- 267
I + + + W ILS S + N + WK
Sbjct: 216 --SQKIHFPDFSTRDIHRN-----YVDCVRW--LGDLILSK-----SCE-NAIVCWKPGK 260
Query: 268 -----------YPNMTKVGELQSSNSRILDLSQSPD--GLTVATAGADETIRFWEA 310
N+T +G S I + S D +A + W+
Sbjct: 261 MEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL 316
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 4e-26
Identities = 42/282 (14%), Positives = 81/282 (28%), Gaps = 74/282 (26%)
Query: 40 LWKWENGK-VKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEG 98
LW + V V G D S + + + MD L+LW + +++ ++
Sbjct: 142 LWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE 201
Query: 99 HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNL 158
+ +N + + I + T H V ++W G+L
Sbjct: 202 SY---------DYNPNKTNRPFISQKI-----HFPDFSTR--DIHRNYVDCVRWL--GDL 243
Query: 159 LASGGDDNVVRIWE-----------RSKMSSSKSLHRFTDHCGGVKALAWSPHQV-NVLA 206
+ S +N + W+ + S+ L RF + + +S +LA
Sbjct: 244 ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA 303
Query: 207 TGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLW 266
G + G + +W+++ L+ H
Sbjct: 304 LGN--QVGKLYVWDLEVEDPHKAKCTT---------------LTHH-------------- 332
Query: 267 KYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
+ I S S D + D +I W
Sbjct: 333 ------------KCGAAIRQTSFSRDSSILIAVCDDASIWRW 362
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-24
Identities = 33/281 (11%), Positives = 80/281 (28%), Gaps = 38/281 (13%)
Query: 62 TSVSW---SHDAKTLAV-GYMDSKLQLWDAETSKLVRNLEGH--------HRRVATSSWN 109
V + S + L +++ L++ + +R L+ + A + +
Sbjct: 22 FGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDS 81
Query: 110 HWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWS-NEGNLLASGGDDNVV 168
+ + +L I + + H + LK+ + NLL S D+ +
Sbjct: 82 NTSHPLLAVAGSRGIIRIINPI-TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 140
Query: 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIH 228
R+W + H V + + + + G D +K+W + ++
Sbjct: 141 RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG-EKIMSCG--MDHSLKLWRINSKRMMN 197
Query: 229 GIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLS 288
I + + K+ + + +
Sbjct: 198 AI------------KESYDYNPNKTNRPFIS-QKIHFP------DFSTRDIHRNYVDCVR 238
Query: 289 QSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSL 329
D + + + I W+ D D + V++
Sbjct: 239 WLGD--LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTI 277
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 3e-15
Identities = 25/202 (12%), Positives = 62/202 (30%), Gaps = 40/202 (19%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
LW+ + ++ ++ S ++ + K+ D T + H
Sbjct: 187 LWRINSKRMMNAIK--------ESYDYNPNKTNRPFI--SQKIHFPDFST------RDIH 230
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSII-------------NHDVRVSNNVTSCIKAHSGE 146
V W G ++ S S + +I+ + + +
Sbjct: 231 RNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD 287
Query: 147 VCGLKWS--NEGNLLASGGDDNVVRIWE-RSKMSSSKSLHRFTDH--CGGVKALAWSPHQ 201
+ +++S +LA G + +W+ + T H ++ ++S
Sbjct: 288 IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR-D 346
Query: 202 VNVLATGGGREDGCIKIWNVQK 223
++L +D I W+ +
Sbjct: 347 SSILIAVC--DDASIWRWDRLR 366
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 8e-30
Identities = 50/280 (17%), Positives = 85/280 (30%), Gaps = 70/280 (25%)
Query: 40 LWKWENGKVKKLLQVP---GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS--KLVR 94
+W + K + D+Y S D TL VG S L +WD ++
Sbjct: 76 VWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135
Query: 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT-SCI---KAHSGEVCGL 150
L + + + + S D +I V + + + + H+ +
Sbjct: 136 ELTSSAPACYALAISP-DSKVCFSCCSDGNI-----AVWDLHNQTLVRQFQGHTDGASCI 189
Query: 151 KWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210
SN+G L +GG DN VR W+ + + L + D + +L + P LA G
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWD---LREGRQLQQH-DFTSQIFSLGYCPTG-EWLAVGM- 243
Query: 211 REDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270
E +++ +V K L H
Sbjct: 244 -ESSNVEVLHVNKPDKY--------------------QLHLH------------------ 264
Query: 271 MTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
S +L L + G + G D + W
Sbjct: 265 ----------ESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-27
Identities = 39/273 (14%), Positives = 79/273 (28%), Gaps = 64/273 (23%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W + ++ +++ S D+K D + +WD LVR +GH
Sbjct: 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 182
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA---HSGEVCGLKWSNEG 156
+ ++ +G L +G D ++ R + + ++ L + G
Sbjct: 183 TDGASCIDISN-DGTKLWTGGLDNTV-----RSWDLREGRQLQQHDFTSQIFSLGYCPTG 236
Query: 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCI 216
LA G + + V + + ++ H V +L ++ + G +D +
Sbjct: 237 EWLAVGMESSNVEVLH----VNKPDKYQLHLHESCVLSLKFAYCG-KWFVSTG--KDNLL 289
Query: 217 KIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE 276
W G I S
Sbjct: 290 NAWRTPYGASIF--------------------QSKE------------------------ 305
Query: 277 LQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309
+S +L S D + T D+ +E
Sbjct: 306 ----SSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-25
Identities = 42/257 (16%), Positives = 73/257 (28%), Gaps = 59/257 (22%)
Query: 59 DYPTSVSWSHDAKTLAV-GYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILT 117
S + D + V D+ + ++ + L H V + ++ +
Sbjct: 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISN-PTRHVY 67
Query: 118 SGSKDKSI----INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWER 173
+G K + I+H S + K +G L GG+ + + IW+
Sbjct: 68 TGGKG-CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD- 125
Query: 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK 233
+ + T ALA SP V + DG I +W++ T +
Sbjct: 126 LAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCS--DGNIAVWDLHNQTLVR----- 177
Query: 234 AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDG 293
GH + S DG
Sbjct: 178 --------------QFQGH----------------------------TDGASCIDISNDG 195
Query: 294 LTVATAGADETIRFWEA 310
+ T G D T+R W+
Sbjct: 196 TKLWTGGLDNTVRSWDL 212
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 5e-23
Identities = 33/182 (18%), Positives = 66/182 (36%), Gaps = 13/182 (7%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W N + + Q G D + + S+D L G +D+ ++ WD + ++
Sbjct: 167 VWDLHNQTLVRQFQ--GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DF 223
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
++ + + G L G + ++ V + + H V LK++ G
Sbjct: 224 TSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQ--LHLHESCVLSLKFAYCGKWF 280
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219
S G DN++ W + + + V + S + TG G D ++
Sbjct: 281 VSTGKDNLLNAWR----TPYGASIFQSKESSSVLSCDISVDD-KYIVTGSG--DKKATVY 333
Query: 220 NV 221
V
Sbjct: 334 EV 335
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 1e-29
Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 48/309 (15%)
Query: 40 LWKWENGKVKKLLQVP--GEDDYPTSVSWSHDA--KTLAVGYMDSKLQLWDAET------ 89
++K + L D ++ W+ + +A D ++LW+ +
Sbjct: 37 VFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS 96
Query: 90 ---SKLVRNLEGHHRRVATSSW-NHWNGHILTSGSKDKSI------------INHDVRVS 133
+ L + + + G L D +
Sbjct: 97 GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM 156
Query: 134 NNVTSCIKAHSGEVCGLKWS---NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCG 190
++ H L W LA + + R K + H
Sbjct: 157 KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQ-RGKDGKLHVAAKLPGHKS 215
Query: 191 GVKALAWSP---HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKE 247
+++++W+P ++ATG +DG I+I+ + + +
Sbjct: 216 LIRSISWAPSIGRWYQLIATGC--KDGRIRIFKITEKLSP-------LASEESLTNSNMF 266
Query: 248 ILSGHGF---SASGDGNKLCLWKYPNMTK---VGELQSSNSRILDLSQSPDGLTVATAGA 301
S D N + + + + E N + +S + G +++AG
Sbjct: 267 DNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGD 326
Query: 302 DETIRFWEA 310
D +R W+A
Sbjct: 327 DGKVRLWKA 335
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 5e-25
Identities = 43/299 (14%), Positives = 85/299 (28%), Gaps = 70/299 (23%)
Query: 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETS----KLVRNLEGHHRRVATSSWNH-WNGHIL 116
V + + +A D ++++ + +L + H + W G I+
Sbjct: 15 HDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRII 74
Query: 117 TSGSKDKSII-----NHDVRVSNNVTSCI---KAHSGEVCGLKWS--NEGNLLASGGDDN 166
S S DK++ S + + G + +K++ + G LA G+D
Sbjct: 75 ASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDG 134
Query: 167 VVRIWERSKMSSSKSL----------HRFTDHCGGVKALAWSP--HQVNVLATGGGREDG 214
++R+++ + S +S +H L+W P LA +
Sbjct: 135 ILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL--EQ 192
Query: 215 CIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG-------F------------S 255
I + G L GH + +
Sbjct: 193 AIIYQRGKDGKLHVA-----------------AKLPGHKSLIRSISWAPSIGRWYQLIAT 235
Query: 256 ASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD----ETIRFWEA 310
DG ++ ++K + S + S D A +D E
Sbjct: 236 GCKDG-RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN 293
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-24
Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 36/266 (13%)
Query: 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI---KAHSGEVCGLKW 152
GH V ++ G + + S D+ I + + +AH + + W
Sbjct: 7 DSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW 65
Query: 153 S--NEGNLLASGGDDNVVRIWE------RSKMSSSKSLHRFTDHCGGVKALAWSPHQV-N 203
+ G ++AS D V++WE L D G + ++ ++P +
Sbjct: 66 ASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL 125
Query: 204 VLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWN-RHHKEILSGHGFS------- 255
LA G DG +++++ + + + +++ L +H + +
Sbjct: 126 KLACLG--NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE 183
Query: 256 --ASG-DGNKLCLWKYPN--MTKVGELQSSNSRILDLSQSPD----GLTVATAGADETIR 306
A + + + + +L S I +S +P +AT D IR
Sbjct: 184 KLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243
Query: 307 FWEAFGP----SGDEDSVSHLAGLVS 328
++ + +E + S
Sbjct: 244 IFKITEKLSPLASEESLTNSNMFDNS 269
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 2e-20
Identities = 34/202 (16%), Positives = 64/202 (31%), Gaps = 13/202 (6%)
Query: 35 GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDA---KTLAVGYMDSKLQLWDAETSK 91
L W + + +SW + LAV ++ + + K
Sbjct: 144 PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK 203
Query: 92 --LVRNLEGHHRRVATSSW---NHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGE 146
+ L GH + + SW ++ +G KD I + +
Sbjct: 204 LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT-EKLSPLASEESLTN 262
Query: 147 VCGLKWSNEGNLLASG-GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVL 205
S + ++ A G D N E + L DH G V +++W+ +L
Sbjct: 263 SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG-TIL 321
Query: 206 ATGGGREDGCIKIWNVQKGTCI 227
++ G DG +++W
Sbjct: 322 SSAGD--DGKVRLWKATYSNEF 341
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 1e-17
Identities = 31/158 (19%), Positives = 67/158 (42%), Gaps = 12/158 (7%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDA----KTLAVGYMDSKLQLWDAETSKLVRN 95
+ ++GK+ ++PG S+SW+ + +A G D +++++
Sbjct: 196 YQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL--SP 253
Query: 96 LEGHHRRVATSSWNHW-NGHILTSGSKDKSIINHDVRVSNNVT----SCIKAHSGEVCGL 150
L ++ +++ + + G D + + +N+ S H+GEV +
Sbjct: 254 LASEESLTNSNMFDNSADVDMDAQGRSDSNTE-EKAELQSNLQVELLSEHDDHNGEVWSV 312
Query: 151 KWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDH 188
W+ G +L+S GDD VR+W+ + + K + T
Sbjct: 313 SWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ 350
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 62/292 (21%), Positives = 93/292 (31%), Gaps = 64/292 (21%)
Query: 62 TSVSWSHDAKTLAVGYMDSKLQLWDAE--TSKLVRNLEGHHRRVATSSWNHW-NGHILTS 118
+ K LA D +++++ E T KL+ L GH V W H G IL S
Sbjct: 13 HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILAS 72
Query: 119 GSKDKSIINHDVRVSNNVTSCI---KAHSGEVCGLKWS--NEGNLLASGGDDNVVRIWER 173
S D ++ N S I HS V ++W+ G LL D V + E
Sbjct: 73 CSYDGKVLIWK--EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE- 129
Query: 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVNV------------LATGGGREDGCIKIWNV 221
K + + S H GV + +W+P + TGG D +KIW
Sbjct: 130 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG--ADNLVKIWKY 187
Query: 222 QKGTCIHGIDAKAQICGLEWNRHHKEILSGHG-------F-----------SASGDGNKL 263
+ L GH + S S D
Sbjct: 188 NSDA---------------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-TC 231
Query: 264 CLWKYPNMT-----KVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+W N + + + + S S G +A +G D + W+
Sbjct: 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 96.2 bits (239), Expect = 5e-22
Identities = 48/280 (17%), Positives = 83/280 (29%), Gaps = 47/280 (16%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWS--HDAKTLAVGYMDSKLQLWDAETSKLVRN-- 95
+WK ENG+ ++ SV W+ L V D K+ + + + +
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140
Query: 96 LEGHHRRVATSSWN------------HWNGHILTSGSKDKSIINHDVRVSNNVTSCI--- 140
++ H V ++SW +G D +
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 141 KAHSGEVCGLKWS---NEGNLLASGGDDNVVRIWERSKMSSS--KSLHRFTDHCGGVKAL 195
+ HS V + WS + LAS D IW + K+L + +
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 260
Query: 196 AWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG-- 253
+WS NVLA GG D + +W + H
Sbjct: 261 SWSLSG-NVLALSGG--DNKVTLWKEN------------------LEGKWEPAGEVHQGG 299
Query: 254 FSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDG 293
+ G G + P ++ L S + +D ++
Sbjct: 300 GGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMK 339
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 6e-19
Identities = 45/334 (13%), Positives = 92/334 (27%), Gaps = 38/334 (11%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWS-------------HDAKTLAVGYMDSKLQLWD 86
+ +++ + + S SW+ +++ G D+ +++W
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
Query: 87 AETS----KLVRNLEGHHRRVATSSW--NHWNGHILTSGSKDKSII--NHDVRVSNNVTS 138
+ L LEGH V +W L S S+D++ I D +
Sbjct: 187 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT 246
Query: 139 CIKA--HSGEVCGLKWSNEGNLLASGGDDNVVRIWERS---KMSSSKSLHRFTDHCGG-- 191
+K + WS GN+LA G DN V +W+ + K + +H+ GG
Sbjct: 247 LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQGGGGSGGGG 306
Query: 192 --VKALAWSPHQVNVLATGGGRE--------DGCIKIWNVQKGTCIHGIDAKAQICGLEW 241
K L + + +
Sbjct: 307 ATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFTASYTFAKFSTGSMLLTKDIVGK 366
Query: 242 NRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA 301
+ + L + + +T + +I + S
Sbjct: 367 SGVSIKRLPTELQRKFLFDDVYLDKEIEKVTIEARKSNPYPQISESSLLFKDALDYMEKT 426
Query: 302 DETIRFWEAFGPSGDEDSVSHLAGLVSLKTSVIR 335
W+ D S + +K ++++
Sbjct: 427 SSDYNLWKLSSILFDPVSYPYKTDNDQVKMALLK 460
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 4e-12
Identities = 37/195 (18%), Positives = 68/195 (34%), Gaps = 38/195 (19%)
Query: 141 KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH 200
AH+ + G LA+ D ++I+E + K + T H G V + W+
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG-ETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 201 QV-NVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS------GHG 253
+ +LA+ DG + IW + G QI H + S +G
Sbjct: 65 KFGTILASCS--YDGKVLIWKEENGRWS-------QIAVHAV--HSASVNSVQWAPHEYG 113
Query: 254 F---SASGDGNKLCLWKYP--NMTKVGELQ-------------SSNSRILDLSQSPDGLT 295
AS DG K+ + ++ T + ++ + + + +
Sbjct: 114 PLLLVASSDG-KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK 172
Query: 296 VATAGADETIRFWEA 310
T GAD ++ W+
Sbjct: 173 FVTGGADNLVKIWKY 187
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 6e-29
Identities = 43/293 (14%), Positives = 96/293 (32%), Gaps = 32/293 (10%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDAETSKLVRNLEG 98
LW + ++ G T + ++ + M+ +L D + + L
Sbjct: 146 LWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASS 205
Query: 99 HHRRVATSS--WNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI---KAHSGEVCGLKWS 153
+ S + + ++ +G ++ + N + + H +V + +
Sbjct: 206 DTINIWFCSLDVSA-SSRMVVTGDNVGNV-----ILLNMDGKELWNLRMHKKKVTHVALN 259
Query: 154 NEG-NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE 212
LA+ D V+IW+ ++ S H V A +SP L T +
Sbjct: 260 PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-ARLLTTD--Q 316
Query: 213 DGCIKIWNVQKGTCI-------HGIDAKAQICGLEWNRHHKEILSG------HGFSASGD 259
I++++ + C H W+ + I+ G +
Sbjct: 317 KSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYE 376
Query: 260 GNKLCLWKYPNMTKVGELQSS-NSRILDLSQ-SPDGLTVATAGADETIRFWEA 310
+ ++ + + +L +S I L++ +P G T+A+ I W
Sbjct: 377 LRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLAS-AMGYHILIWSQ 428
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 9e-29
Identities = 39/261 (14%), Positives = 85/261 (32%), Gaps = 22/261 (8%)
Query: 62 TSVSWSHDAKTLAVGY------MDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHI 115
S+ + L + L ++ ++++ RR + +W+ +
Sbjct: 75 RSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPST 134
Query: 116 LTSGSKDKSIINHDVRVSNN-VTSCIKAHSGEVCGLKWS-NEGNLLASGGDDNVVRIWER 173
+ GSK I+ + + + G + GLK++ N + + R+ +
Sbjct: 135 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194
Query: 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA- 232
+ + +L S ++ TG G + + N+ G + +
Sbjct: 195 KG-NILRVFASSDTINIWFCSLDVSASS-RMVVTGDN--VGNVILLNM-DGKELWNLRMH 249
Query: 233 KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS---NSRILDLSQ 289
K ++ + N L+ +AS D + +W + S +
Sbjct: 250 KKKVTHVALNPCCDWFLA----TASVD-QTVKIWDLRQVRGKASFLYSLPHRHPVNAACF 304
Query: 290 SPDGLTVATAGADETIRFWEA 310
SPDG + T IR + A
Sbjct: 305 SPDGARLLTTDQKSEIRVYSA 325
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 5e-17
Identities = 34/302 (11%), Positives = 69/302 (22%), Gaps = 77/302 (25%)
Query: 42 KWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQ-----LWDAETSK----- 91
+ E K +++ P + + +AK L + LW
Sbjct: 14 RPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGPQILPP 73
Query: 92 ---LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVC 148
+VR L H A+ + S ++ ++ +
Sbjct: 74 CRSIVRTLHQHKLGRASWP----SVQQGLQQSFLHTLDSYRIL------QKAAPFDRRAT 123
Query: 149 GLKWSNEG-NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207
L W + +A G + +W + + G + L ++P N
Sbjct: 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGI-KDKPTFIKGIGAGGSITGLKFNPLNTNQFYA 182
Query: 208 GGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK 267
+G ++ + + + S
Sbjct: 183 SS--MEGTTRLQDFKGNIL-------------------RVFASSDT-------------- 207
Query: 268 YPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG-----PSGDEDSVSH 322
N L S V T + G + V+H
Sbjct: 208 ------------INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTH 255
Query: 323 LA 324
+A
Sbjct: 256 VA 257
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 6e-15
Identities = 28/210 (13%), Positives = 65/210 (30%), Gaps = 34/210 (16%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAK-TLAVGYMDSKLQLWDAETSKLVRNL-- 96
L + ++ L T V+ + LA +D +++WD + +
Sbjct: 235 LLNMDGKELWNLR---MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY 291
Query: 97 -EGHHRRVATSSWNHWNGHILTSGSKDKSI----------------INHDVRVSNNVTSC 139
H V + ++ +G L + + I H
Sbjct: 292 SLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA 350
Query: 140 IKAHSGEVCGLKWSNEGNLLASGG-DDNVVRIWERSKMSSSKSLHRFTD-HCGGVKAL-A 196
+ + + N + + + +++ +S K + + D G+ +L
Sbjct: 351 AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFD---GNSGKMMCQLYDPESSGISSLNE 407
Query: 197 WSPHQVNVLATGGGREDGCIKIWNVQKGTC 226
++P + LA+ I IW+ Q+
Sbjct: 408 FNPMG-DTLASAM---GYHILIWSQQEART 433
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 8e-29
Identities = 52/281 (18%), Positives = 85/281 (30%), Gaps = 41/281 (14%)
Query: 56 GEDDYPTSVSWSHDAKTLAVGYMDSK-LQLWDAETSK--LVRNLEGHHRRVATS---SWN 109
+ ++ T +S+ +A S ++ D SK V GH V T+ S
Sbjct: 16 TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI 75
Query: 110 HWNGHILTSGSKDKSII-------NHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL--A 160
L SG + +I V NV S + +G + + W EG L
Sbjct: 76 K-GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 134
Query: 161 SGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWN 220
G DN S SL + H + A + T G +DG + +
Sbjct: 135 GEGRDNFGVFIS---WDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG--DDGSVVFYQ 189
Query: 221 VQKGTCIHGIDAKAQICGLEWNRHHKEILS-------GHGF-SASGDGNKLCLWKYPNMT 272
A + + G + D K+ + +
Sbjct: 190 GPPFKF------SASDRTHH--KQGSFVRDVEFSPDSGEFVITVGSDR-KISCFDGKSGE 240
Query: 273 KVGELQSSNSRILDLSQSP---DGLTVATAGADETIRFWEA 310
+ ++ + + D AT GAD TIR W+
Sbjct: 241 FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV 281
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 4e-26
Identities = 38/259 (14%), Positives = 83/259 (32%), Gaps = 68/259 (26%)
Query: 61 PTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS 120
P S ++D T + D L + + T +++++ + A S ++ L G+
Sbjct: 409 PKVASANNDGFTAVLTN-DDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN 467
Query: 121 KDKSIINHDVRVSNNVTS-CIKA-HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSS 178
+ ++S+ S +K + + S +A+G + +++ S
Sbjct: 468 TIQVF-----KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ--SR 520
Query: 179 SKSLHRFTDHCGGVKALAWSPHQVNV---------LATGGGREDGCIKIWNVQKGTCIHG 229
R+ + A++W P + +ATG D I I++V++
Sbjct: 521 EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS--LDTNIFIYSVKRP----- 573
Query: 230 IDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQ 289
+ L+ H + +L
Sbjct: 574 -------------MKIIKALNAH----------------------------KDGVNNLLW 592
Query: 290 SPDGLTVATAGADETIRFW 308
T+ ++GAD I+ W
Sbjct: 593 ETPS-TLVSSGADACIKRW 610
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 51/346 (14%), Positives = 96/346 (27%), Gaps = 72/346 (20%)
Query: 40 LWKWENGKVKKLLQVPGEDDYP-TSVSWS--HDAKTLAVGYMDSKLQLWDAETSKLVRNL 96
+ KV ++Q G T+V +S ++ L G K+ +W K ++
Sbjct: 45 CLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV 104
Query: 97 E--------GHHRRVATSSWNHWNGHILT-SGSKDKSIINHDVRV----SNNVTSCIKAH 143
E ++ SW+ + +D S N + H
Sbjct: 105 EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFG-----VFISWDSGNSLGEVSGH 159
Query: 144 SGEVCGLKWSNEGN-LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQV 202
S + + GDD V ++ S S V+ + +SP
Sbjct: 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG 219
Query: 203 NVLATGGGREDGCIKIWNVQKGTCIHGI-------------------------------- 230
+ T G D I ++ + G + I
Sbjct: 220 EFVITVG--SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIR 277
Query: 231 --DAKAQICGLEWNRH-HKEILSGHGFSASGDG--------NKLCLWKYPNMTKVGELQS 279
D C +W + G A+G+G L ++ + + +
Sbjct: 278 VWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISG 337
Query: 280 SNSRILDLSQSPDGLTVATAGADETIRFWEAF-GPSGDEDSVSHLA 324
N I L+ +P + + D I W + + + L
Sbjct: 338 HNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLD 379
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 3e-25
Identities = 37/278 (13%), Positives = 87/278 (31%), Gaps = 45/278 (16%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSV--SWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97
+W K + + + V + + + +D L ++ ++++ +
Sbjct: 278 VWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYELGHDEVLKTIS 336
Query: 98 GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157
GH++ + + N L SGS D I+ +S + HS + L S
Sbjct: 337 GHNKGITALTVNP-----LISGSYDGRIMEWSS------SSMHQDHSNLIVSLDNSK-AQ 384
Query: 158 LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIK 217
+S D+ +++ +K + K + + A D +
Sbjct: 385 EYSSISWDDTLKVNGITK----------HEFGSQPKVASANND--GFTAVLTN--DDDLL 430
Query: 218 IWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASG----DGNKLCLWKYPNMTK 273
I G I + + +GN + ++K ++
Sbjct: 431 ILQSFTGDIIK-----------SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV 479
Query: 274 VGELQSS-NSRILDLSQSPDGLTVATAGADETIRFWEA 310
+L++ ++ +S SP +A I ++
Sbjct: 480 SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDL 517
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 39/193 (20%), Positives = 72/193 (37%), Gaps = 22/193 (11%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+ + G + K +++ S+S ++ A L G +L D E S ++
Sbjct: 431 ILQSFTGDIIKSVRL-NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA 489
Query: 100 H-RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWS----- 153
++ S + + +G I+ +D++ TS + ++ + W
Sbjct: 490 KPSYISISP----SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG 545
Query: 154 -----NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATG 208
E +L+A+G D + I+ K + H GV L W + L +
Sbjct: 546 ANEEEIEEDLVATGSLDTNIFIYSVK--RPMKIIKALNAHKDGVNNLLWETP--STLVSS 601
Query: 209 GGREDGCIKIWNV 221
G D CIK WNV
Sbjct: 602 G--ADACIKRWNV 612
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 7e-21
Identities = 36/292 (12%), Positives = 77/292 (26%), Gaps = 69/292 (23%)
Query: 27 NNVLAVALGPV--------LFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM 78
+ A+ + P+ + W + + S+ S A+ +
Sbjct: 340 KGITALTVNPLISGSYDGRIMEWSSSSMH-------QDHSNLIVSLDNS-KAQEYSSISW 391
Query: 79 DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS 138
D L++ + G +VA+++ N + D ++ + + S
Sbjct: 392 DDTLKVNGITKHE-----FGSQPKVASAN----NDGFTAVLTNDDDLLILQSFTGDIIKS 442
Query: 139 CIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWS 198
G L + L G V ++ + K+ R ++ S
Sbjct: 443 VRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLR-----AKPSYISIS 497
Query: 199 PHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASG 258
P +A G G I ++++Q W +I + + +
Sbjct: 498 P-SETYIAAGD--VMGKILLYDLQSREVKTSR----------WAFRTSKINAIS-WKPAE 543
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
G + + VAT D I +
Sbjct: 544 KG-------------------------ANEEEIEEDLVATGSLDTNIFIYSV 570
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 7e-28
Identities = 41/287 (14%), Positives = 87/287 (30%), Gaps = 77/287 (26%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
LW + G + +L SV W+ D + +++ LW+ + ++++ E
Sbjct: 134 LWN-KTGALLNVLN--FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELK 190
Query: 100 --------------HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSG 145
+ + + G +I + + T + H G
Sbjct: 191 ETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP-KGAIFVYQIT-EKTPTGKLIGHHG 248
Query: 146 EVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP--HQVN 203
+ L++++ LL S DD +RIW + S + F H + + +W
Sbjct: 249 PISVLEFNDTNKLLLSASDDGTLRIWH---GGNGNSQNCFYGHSQSIVSASWVGDDK--- 302
Query: 204 VLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKL 263
+ + DG +++W++++ T + + G
Sbjct: 303 -VISCS--MDGSVRLWSLKQNTLLA-------------------LSIVDG---------- 330
Query: 264 CLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
I S DG A A D + ++
Sbjct: 331 ------------------VPIFAGRISQDGQKYAVAFMDGQVNVYDL 359
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 2e-27
Identities = 51/319 (15%), Positives = 95/319 (29%), Gaps = 77/319 (24%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDAETSK------- 91
+G VK +L+ + D S +W+ D LA G +S +L +
Sbjct: 28 SSDDLDGFVK-ILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYW 86
Query: 92 -------------LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS 138
L + +V +W+H +G+ + +G ++ + R+ N +
Sbjct: 87 KLTIIAELRHPFALSASSGKTTNQVTCLAWSH-DGNSIVTGVENGEL-----RLWNKTGA 140
Query: 139 CI---KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKAL 195
+ H + +KW+ +G + S +NV +W + + + A
Sbjct: 141 LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE 200
Query: 196 AWSPHQVNV----------LATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHH 245
S G G I ++ + + T
Sbjct: 201 NHSGDGSLGVDVEWVDDDKFVIPGP--KGAIFVYQITEKTPTG----------------- 241
Query: 246 KEILSGHG-------FS------ASG-DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSP 291
L GH F+ S D L +W N + I+ S
Sbjct: 242 --KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG 299
Query: 292 DGLTVATAGADETIRFWEA 310
D V + D ++R W
Sbjct: 300 DD-KVISCSMDGSVRLWSL 317
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 5e-24
Identities = 41/286 (14%), Positives = 77/286 (26%), Gaps = 76/286 (26%)
Query: 40 LWKWENGKVKKLLQVP-------------GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWD 86
LW +G V + ++ G+ V W D K + G + ++
Sbjct: 175 LWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP-KGAIFVYQ 233
Query: 87 AETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV----SNNVTSCIKA 142
L GHH ++ +N +L S S D ++ R+ + N +C
Sbjct: 234 ITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTL-----RIWHGGNGNSQNCFYG 287
Query: 143 HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQV 202
HS + W + + S D VR+W + + L + A S
Sbjct: 288 HSQSIVSASWVGDDKV-ISCSMDGSVRLWS---LKQNTLLALSIVDGVPIFAGRISQDG- 342
Query: 203 NVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNK 262
A DG + +++++K L G+
Sbjct: 343 QKYAVAFM--DGQVNVYDLKKLNSKS------------------RSLYGN---------- 372
Query: 263 LCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
+ + L ++ D
Sbjct: 373 -----------------RDGILNPLPIPLYASYQSSQDNDYIFDLS 401
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 1e-22
Identities = 28/191 (14%), Positives = 62/191 (32%), Gaps = 12/191 (6%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+++ L G + + ++ K L D L++W GH
Sbjct: 231 VYQITEKTPTGKLI--GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH 288
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
+ + ++SW + ++ S S D S+ ++ N + + + + S +G
Sbjct: 289 SQSIVSASWVG-DDKVI-SCSMDGSVRLWSLK-QNTLLALSIVDGVPIFAGRISQDGQKY 345
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHR-FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKI 218
A D V +++ + S R + G+ P + ++ D +
Sbjct: 346 AVAFMDGQVNVYD---LKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDN--DYIFDL 400
Query: 219 -WNVQKGTCIH 228
WN
Sbjct: 401 SWNCAGNKISV 411
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 6e-12
Identities = 23/170 (13%), Positives = 47/170 (27%), Gaps = 28/170 (16%)
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219
D N + + + + + + W+P ++LA G + ++
Sbjct: 18 TQEDDTNSIDSS--DDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEK--NSVARLA 73
Query: 220 NVQKGTCI-HGIDAKAQICGLEWNRHHKEILSGHG-------FS------ASGDGNK-LC 264
+ + I L +S +G N L
Sbjct: 74 RIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELR 133
Query: 265 LWKYPNMTKVGELQSS----NSRILDLSQSPDGLTVATAGADETIRFWEA 310
LW N T G L + + I+ + + DG + + + W
Sbjct: 134 LW---NKT--GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNV 178
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 3/110 (2%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK-LVRNLEG 98
LW + + L + + S D + AV +MD ++ ++D + R+L G
Sbjct: 314 LWSLKQNTLLALSI--VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYG 371
Query: 99 HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVC 148
+ + +S D N ++ G V
Sbjct: 372 NRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVV 421
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-27
Identities = 54/288 (18%), Positives = 103/288 (35%), Gaps = 56/288 (19%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
LW+ + + + + + H A W K + L+GH
Sbjct: 58 LWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGH 117
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT-SCIKA---HSGEVCGLKWSNE 155
V + G+ + SGS D ++ +V + VT C++ H+G V +
Sbjct: 118 DDHV-ITCLQF-CGNRIVSGSDDNTL-----KVWSAVTGKCLRTLVGHTGGVWSSQMR-- 168
Query: 156 GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215
N++ SG D +++W + + +H H V+ + + +G D
Sbjct: 169 DNIIISGSTDRTLKVWN---AETGECIHTLYGHTSTVRCMHLHE---KRVVSGS--RDAT 220
Query: 216 IKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG-------------FSASGDGNK 262
+++W+++ G C+H +L GH S + D
Sbjct: 221 LRVWDIETGQCLH-------------------VLMGHVAAVRCVQYDGRRVVSGAYDFM- 260
Query: 263 LCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ +W T + LQ +R+ S DG+ V + D +IR W+
Sbjct: 261 VKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDV 306
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-27
Identities = 65/311 (20%), Positives = 116/311 (37%), Gaps = 69/311 (22%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
W+ K K+L+ G DD+ + + G D+ L++W A T K +R L GH
Sbjct: 102 NWRRGELKSPKVLK--GHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH 158
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT-SCI---KAHSGEVCGLKWSNE 155
V +S +I+ SGS D+++ +V N T CI H+ V +
Sbjct: 159 TGGVWSSQ---MRDNIIISGSTDRTL-----KVWNAETGECIHTLYGHTSTVRCMHLH-- 208
Query: 156 GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215
+ SG D +R+W+ + + + LH H V+ + + + +G D
Sbjct: 209 EKRVVSGSRDATLRVWD---IETGQCLHVLMGHVAAVRCVQYDG---RRVVSGAY--DFM 260
Query: 216 IKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG-------------FSASGDGNK 262
+K+W+ + TC+H L GH S S D +
Sbjct: 261 VKVWDPETETCLH-------------------TLQGHTNRVYSLQFDGIHVVSGSLDTS- 300
Query: 263 LCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA---------FGP 313
+ +W + L S + + + + AD T++ W+ GP
Sbjct: 301 IRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGP 358
Query: 314 SGDEDSVSHLA 324
+ + +V+ L
Sbjct: 359 NKHQSAVTCLQ 369
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 2e-24
Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 23/193 (11%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W E G+ +L G V + D + + G D +++WD ET + L+GH
Sbjct: 223 VWDIETGQCLHVLM--GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGH 278
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT-SCIK---AHSGEVCGLKWSNE 155
RV + ++ G + SGS D SI RV + T +CI H G++
Sbjct: 279 TNRVYSLQFD---GIHVVSGSLDTSI-----RVWDVETGNCIHTLTGHQSLTSGMELK-- 328
Query: 156 GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215
N+L SG D+ V+IW+ ++L H V L ++ + V T +DG
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV---ITSS--DDGT 383
Query: 216 IKIWNVQKGTCIH 228
+K+W+++ G I
Sbjct: 384 VKLWDLKTGEFIR 396
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 7e-24
Identities = 54/275 (19%), Positives = 97/275 (35%), Gaps = 72/275 (26%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W E G+ L G + K + G D+ L++WD ET + + L GH
Sbjct: 183 VWNAETGECIHTLY--GHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGH 238
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT-SCIKA---HSGEVCGLKWSNE 155
V ++G + SG+ D + +V + T +C+ H+ V L++
Sbjct: 239 VAAV---RCVQYDGRRVVSGAYDFMV-----KVWDPETETCLHTLQGHTNRVYSLQFD-- 288
Query: 156 GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215
G + SG D +R+W+ + + +H T H + N+L +G D
Sbjct: 289 GIHVVSGSLDTSIRVWD---VETGNCIHTLTGHQSLTSGMELKD---NILVSGNA--DST 340
Query: 216 IKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVG 275
+KIW+++ G C+ L G
Sbjct: 341 VKIWDIKTGQCLQ-------------------TLQGP----------------------- 358
Query: 276 ELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
S + L + + V T+ D T++ W+
Sbjct: 359 --NKHQSAVTCLQFNKN--FVITSSDDGTVKLWDL 389
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 4e-27
Identities = 35/288 (12%), Positives = 85/288 (29%), Gaps = 29/288 (10%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVS--WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97
+ ++ K + P + L + Y +++ + D++T+K++R +E
Sbjct: 62 FTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121
Query: 98 GHHRRVATSSWNH--WNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNE 155
+ H N +I + E +
Sbjct: 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKD 181
Query: 156 GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215
LLA D ++ ++ S + S D +K + ++ + D
Sbjct: 182 SLLLALYSPDGILDVYNLSSPDQASSRFP-VDEEAKIKEVKFAD-NGYWMVVEC---DQT 236
Query: 216 IKIWNVQKGTC------IHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269
+ ++++K + K + + K +++ S + N L ++K+
Sbjct: 237 VVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAY-----SNESNSLTIYKFD 291
Query: 270 NMTKVGELQSSNSRILDLSQ---------SPDGLTVATAGADETIRFW 308
TK ++ L DG A +++
Sbjct: 292 KKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSFNIV 339
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 79.0 bits (194), Expect = 9e-17
Identities = 21/268 (7%), Positives = 52/268 (19%), Gaps = 33/268 (12%)
Query: 61 PTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWN---HWNGHILT 117
+ S +D D L + SK + + + R + L
Sbjct: 39 ELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLL 98
Query: 118 SGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKW--SNEGNLLASGGDDNVVRIWERSK 175
I D + + + + E+ + + +
Sbjct: 99 LLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQS--- 155
Query: 176 MSSSKSLHRFTDH-CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA 234
+ + +LA DG + ++N+
Sbjct: 156 YEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYS--PDGILDVYNLSSPDQASSRFPVD 212
Query: 235 QICGLEWNRHHKEILS------GHGFSASGDGNKLCLW-----KYPNMTKVGELQSSNSR 283
+I G+ D + + + +
Sbjct: 213 ---------EEAKIKEVKFADNGYWMVVECDQT-VVCFDLRKDVGTLAYPTYTIPEFKTG 262
Query: 284 ILDLSQSPDGLTVATAGADETIRFWEAF 311
+ G + + F
Sbjct: 263 TVTYDIDDSGKNMIAYSNESNSLTIYKF 290
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 4e-27
Identities = 50/274 (18%), Positives = 89/274 (32%), Gaps = 40/274 (14%)
Query: 49 KKLLQV-PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSS 107
+L G D V D +A D ++LW + L + + +
Sbjct: 8 YQLSATLKGHDQDVRDVVAVDD-SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVC 66
Query: 108 WNHWNGHILTSGSKDKSIINHDV--RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD 165
++ +L G KD I + + + H G VC L + ++ SG D
Sbjct: 67 YDS-EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DGVVISGSWD 123
Query: 166 NVVRIWERSKMSSSKSLHRFTDHCGGV---KALAWSPHQVNVLATGGGREDGCIKIWNVQ 222
++W+ ++ H V K +++S ++ T D IK+W
Sbjct: 124 KTAKVWK-----EGSLVYNLQAHNASVWDAKVVSFSENK---FLTASA--DKTIKLWQN- 172
Query: 223 KGTCIHGIDAKAQICGLEWNRHHKEILS------GHGFSASGDGNKLCLWKYPNMTKVGE 276
I H+ + GH S S DG + L +
Sbjct: 173 -DKVIKTFSGI----------HNDVVRHLAVVDDGHFISCSNDGL-IKLVDMHTGDVLRT 220
Query: 277 LQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ S + + P+G + + G D T+R W
Sbjct: 221 YEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSK 253
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 3e-24
Identities = 42/275 (15%), Positives = 88/275 (32%), Gaps = 72/275 (26%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
L+ L G S+S+ + G D ++W LV NL+ H
Sbjct: 88 LFATSGEDPLYTLI--GHQGNVCSLSFQDG--VVISGSWDKTAKVWK--EGSLVYNLQAH 141
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK----AHSGEVCGLKWSNE 155
+ V + ++ + + S DK+I ++ N IK H+ V L ++
Sbjct: 142 NASVWDAKVVSFSENKFLTASADKTI-----KLWQN-DKVIKTFSGIHNDVVRHLAVVDD 195
Query: 156 GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215
G+ S +D ++++ + M + L + H V + P+ + + G ED
Sbjct: 196 GHF-ISCSNDGLIKLVD---MHTGDVLRTYEGHESFVYCIKLLPN--GDIVSCG--EDRT 247
Query: 216 IKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVG 275
++IW+ + G+ +++
Sbjct: 248 VRIWSKENGSLKQ-------------------VITLP----------------------- 265
Query: 276 ELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
I + +G + +D +R +
Sbjct: 266 -----AISIWSVDCMSNG-DIIVGSSDNLVRIFSQ 294
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 4e-20
Identities = 43/245 (17%), Positives = 84/245 (34%), Gaps = 55/245 (22%)
Query: 86 DAET-SKLVRNLEGHH---RRVATSSWNHWNGHILTSGSKDKSIINHDVRV----SNNVT 137
D T +L L+GH R V + + S S+D ++ R+ +
Sbjct: 3 DPFTGYQLSATLKGHDQDVRDVVAV-----DDSKVASVSRDGTV-----RLWSKDDQWLG 52
Query: 138 SCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAW 197
+ + G + + + +E LL GG D ++ S L+ H G V +L++
Sbjct: 53 TVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF 112
Query: 198 SPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSAS 257
V+ +G D K+W G+ ++ + A H+ + S S
Sbjct: 113 QD---GVVISGS--WDKTAKVWKE--GSLVYNLQA-----------HNASVWDAKVVSFS 154
Query: 258 GDG-------NKLCLWKYPNMTKVGELQSS-----NSRILDLSQSPDGLTVATAGADETI 305
+ + LW + ++ + N + L+ DG + D I
Sbjct: 155 ENKFLTASADKTIKLW------QNDKVIKTFSGIHNDVVRHLAVVDDG-HFISCSNDGLI 207
Query: 306 RFWEA 310
+ +
Sbjct: 208 KLVDM 212
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 6e-18
Identities = 36/196 (18%), Positives = 67/196 (34%), Gaps = 31/196 (15%)
Query: 43 WENGKVKKLLQVPGEDDYPTSVSW-SHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH- 100
W+ G + LQ + S D ++LW K+++ G H
Sbjct: 129 WKEGSLVYNLQ--AHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHN 184
Query: 101 ---RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT-SCIKA---HSGEVCGLKWS 153
R +A +GH + S S D I ++ + T ++ H V +K
Sbjct: 185 DVVRHLAVVD----DGHFI-SCSNDGLI-----KLVDMHTGDVLRTYEGHESFVYCIKLL 234
Query: 154 NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213
G++ S G+D VRIW + T + ++ + + G D
Sbjct: 235 PNGDI-VSCGEDRTVRIWS---KENGSLKQVITLPAISIWSVDCMSN--GDIIVGSS--D 286
Query: 214 GCIKIWNVQKGTCIHG 229
++I++ +K
Sbjct: 287 NLVRIFSQEKSRWASE 302
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 6e-07
Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 10/112 (8%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
L G V + + G + + + + ++ G D +++W E L + +
Sbjct: 209 LVDMHTGDVLRTYE--GHESFVYCIKLLPNGDIVSCGE-DRTVRIWSKENGSLKQVITLP 265
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDV---RVSNNVTSCIKAHSGEVC 148
+ + NG I+ GS D + R ++ IK C
Sbjct: 266 AISIWSVDCMS-NGDII-VGSSDNLVRIFSQEKSRWASEDE--IKGELRSGC 313
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 5e-27
Identities = 55/295 (18%), Positives = 105/295 (35%), Gaps = 68/295 (23%)
Query: 40 LWKWENGKVKKLLQ----------------VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQ 83
+++ +G + L P D Y SV +S D K LA G D ++
Sbjct: 89 VYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR 148
Query: 84 LWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH 143
+WD E K+V L+GH + + + + +G L SGS D+++ D+R + + +
Sbjct: 149 IWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLR-TGQCSLTLSIE 206
Query: 144 SGEVCGLKWSNE-GNLLASGGDDNVVRIWERSKMSSSKSLHRFTD-------HCGGVKAL 195
G V + S G +A+G D VR+W+ + + R H V ++
Sbjct: 207 DG-VTTVAVSPGDGKYIAAGSLDRAVRVWD---SETGFLVERLDSENESGTGHKDSVYSV 262
Query: 196 AWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFS 255
++ + +G D +K+WN+Q + + GH
Sbjct: 263 VFTRDG-QSVVSGS--LDRSVKLWNLQNANNKSDSKTPN-------SGTCEVTYIGH--- 309
Query: 256 ASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+L ++ + + + + D + FW+
Sbjct: 310 -------------------------KDFVLSVATTQNDEYILSGSKDRGVLFWDK 339
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 8e-25
Identities = 48/315 (15%), Positives = 100/315 (31%), Gaps = 72/315 (22%)
Query: 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN-------LEGHHRRVATSSW 108
D++++ + L R H V +
Sbjct: 13 NHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKF 72
Query: 109 NHWNGHILTSGSKDKSI--------------INHDVRVSNNVTSCI---KAHSGEVCGLK 151
++ +G L +G +K+ + + + + +
Sbjct: 73 SN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC 130
Query: 152 WSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGR 211
+S +G LA+G +D ++RIW+ + + K + H + +L + P + L +G G
Sbjct: 131 FSPDGKFLATGAEDRLIRIWD---IENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSG- 185
Query: 212 EDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG------FS-------ASG 258
D ++IW+++ G C LS S A+G
Sbjct: 186 -DRTVRIWDLRTGQCSL-------------------TLSIEDGVTTVAVSPGDGKYIAAG 225
Query: 259 DGNKLC-LWKYPNMTKVGELQSSN-------SRILDLSQSPDGLTVATAGADETIRFWEA 310
++ +W V L S N + + + DG +V + D +++ W
Sbjct: 226 SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285
Query: 311 FGPSGDEDSVSHLAG 325
+ DS + +G
Sbjct: 286 QNANNKSDSKTPNSG 300
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 4e-23
Identities = 52/209 (24%), Positives = 79/209 (37%), Gaps = 33/209 (15%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDAETSKLVRNLE- 97
+W G+ L ED T+V+ S D K +A G +D +++WD+ET LV L+
Sbjct: 191 IWDLRTGQCSLTLS--IEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 247
Query: 98 ------GHHRRVATSSWNHWNGHILTSGSKDKSI-----------INHDVRVSNNVTSCI 140
GH V + + +G + SGS D+S+ + S
Sbjct: 248 ENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 306
Query: 141 KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH 200
H V + + + SG D V W+ S L H V ++A +
Sbjct: 307 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWD---KKSGNPLLMLQGHRNSVISVAVANG 363
Query: 201 QV-----NVLATGGGREDGCIKIWNVQKG 224
NV ATG G D +IW +K
Sbjct: 364 SSLGPEYNVFATGSG--DCKARIWKYKKI 390
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 5e-17
Identities = 31/174 (17%), Positives = 49/174 (28%), Gaps = 37/174 (21%)
Query: 141 KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE----RSKMSSSKSLHRFTDHCGGVKALA 196
HS + + + + LH+ DH V +
Sbjct: 12 ANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVK 71
Query: 197 WSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSA 256
+S LATG + +++ V G+ + LS +
Sbjct: 72 FSNDG-EYLATGC---NKTTQVYRVSDGSLVA-------------------RLSDDSAA- 107
Query: 257 SGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
K P SS+ I + SPDG +AT D IR W+
Sbjct: 108 ---------NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI 152
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 7e-27
Identities = 56/294 (19%), Positives = 101/294 (34%), Gaps = 32/294 (10%)
Query: 35 GPVLFLWKWENGKVKKLLQ-VPGEDDYPTSVSWS-HDAKTLAVGYMDSKLQLWDAETSKL 92
G L L + G+V K + V G ++W H+ +A G D + +W+ L
Sbjct: 57 GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116
Query: 93 VRN-------LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV-TSCIKAHS 144
V LEGH +RV +W+ ++L S D I+ DV V T H
Sbjct: 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP 176
Query: 145 GEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKA--LAWSPHQV 202
+ + WS +G L+ + D VR+ E + G + +
Sbjct: 177 DTIYSVDWSRDGALICTSCRDKRVRVIE---PRKGTVVAEKDRPHEGTRPVHAVFVSEG- 232
Query: 203 NVLATGGGR-EDGCIKIWNVQKGTCIHG---IDAKAQICGLEWNRHHKEILSGHGFSASG 258
+L TG R + + +W+ + +D + + ++ + G
Sbjct: 233 KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYL----CGKG 288
Query: 259 DGNKLCLWKY----PNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
D + + ++ P + + S S + P E RF+
Sbjct: 289 DSS-IRYFEITSEAPFLHYLSMFSSKES-QRGMGYMPKR--GLEVNKCEIARFY 338
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 8e-26
Identities = 55/275 (20%), Positives = 104/275 (37%), Gaps = 29/275 (10%)
Query: 55 PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL---VRNLEGHHRRVATSSWNHW 111
D +V+ A + L L +T ++ V + GH V +W
Sbjct: 33 TTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH 92
Query: 112 NGHILTSGSKDKSI------INHDVRVSNNVTSCIKAHSGEVCGLKWSNEG-NLLASGGD 164
N +++ SGS+D ++ V ++ H+ V + W N+L S G
Sbjct: 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC 152
Query: 165 DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224
DNV+ +W+ ++ +L H + ++ WS ++ T D +++ +KG
Sbjct: 153 DNVILVWDVGTGAAVLTL-GPDVHPDTIYSVDWSR-DGALICTSC--RDKRVRVIEPRKG 208
Query: 225 TCIHGIDAKAQICGLEWNRHHKEILSGH------GFSASGDGNKLCLWKYPNMTKVGELQ 278
T + D E R + GFS + ++ LW ++ + LQ
Sbjct: 209 TVVAEKDR-----PHEGTRPVHAVFVSEGKILTTGFSRMSE-RQVALWDTKHLEEPLSLQ 262
Query: 279 S--SNSRILDLSQSPDG-LTVATAGADETIRFWEA 310
++S +L PD + D +IR++E
Sbjct: 263 ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEI 297
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 2e-21
Identities = 29/199 (14%), Positives = 64/199 (32%), Gaps = 21/199 (10%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W G L D SV WS D + D ++++ + +V +
Sbjct: 158 VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRP 217
Query: 100 HR-----RVATSSWNHWNGHILTSG---SKDKSIINHDVR-VSNNVTSCIKAHSGEVCGL 150
H S G ILT+G ++ + D + + ++ S V
Sbjct: 218 HEGTRPVHAVFVS----EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLP 273
Query: 151 KWSNEGN-LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQ-VNVLATG 208
+ + N + G D+ +R +E + + + + + P + + V
Sbjct: 274 FFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV---- 329
Query: 209 GGREDGCIKIWNVQKGTCI 227
+ + + + + C
Sbjct: 330 --NKCEIARFYKLHERKCE 346
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 9e-18
Identities = 47/223 (21%), Positives = 80/223 (35%), Gaps = 34/223 (15%)
Query: 101 RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG---N 157
+ V +S + H G D+ DVRVS + + + +
Sbjct: 4 QVVRSSKFRHVFG---QPAKADQCY--EDVRVSQT--------TWDSGFCAVNPKFMALI 50
Query: 158 LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIK 217
ASGG +V ++ K++ H V +AW PH NV+A+G ED +
Sbjct: 51 CEASGGGAFLVLPLGKTG-RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGS--EDCTVM 107
Query: 218 IWNVQKGTCIHGIDAKAQ--------ICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269
+W + G + + + + W+ + +L SA D N + +W
Sbjct: 108 VWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVL----LSAGCD-NVILVWDVG 162
Query: 270 NMTKVGELQSSN--SRILDLSQSPDGLTVATAGADETIRFWEA 310
V L I + S DG + T+ D+ +R E
Sbjct: 163 TGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 7e-27
Identities = 56/274 (20%), Positives = 95/274 (34%), Gaps = 55/274 (20%)
Query: 62 TSVSWSHDAKTLAVGYMDSKLQLWDAE--TSKLVRNLEGHHRRVATSSWNHW-NGHILTS 118
+ K +A D +++++ E T KL+ L GH V W H G IL S
Sbjct: 13 HDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILAS 72
Query: 119 GSKDKSIINHDVRVSNNVTSCI---KAHSGEVCGLKWS--NEGNLLASGGDDNVVRIWER 173
S D ++ N S I HS V ++W+ G +L D V + E
Sbjct: 73 CSYDGKVMIWKE--ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVE- 129
Query: 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK 233
K + + S H GV + +W+P + G ++
Sbjct: 130 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES------------------- 170
Query: 234 AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS----NSRILDLSQ 289
++ ++G D N + +WKY + + L+S+ + + D++
Sbjct: 171 ------------RKFVTG-----GAD-NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW 212
Query: 290 SPDGL---TVATAGADETIRFWEAFGPSGDEDSV 320
SP L +A+ D T W G
Sbjct: 213 SPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKT 246
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 4e-25
Identities = 53/293 (18%), Positives = 93/293 (31%), Gaps = 66/293 (22%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSH--DAKTLAVGYMDSKLQLWDAETSKL--VRN 95
+++ E K + + G + V W+H LA D K+ +W E + +
Sbjct: 35 IFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAV 94
Query: 96 LEGHHRRVATSSWN-HWNGHILTSGSKDKSIINHDVRVSNNVTSCI-KAHSGEVCGLKWS 153
H V + W H G +L S D + + + + + I AH+ V W+
Sbjct: 95 HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 154
Query: 154 -------------NEGNLLASGGDDNVVRIWERSKMSSS-KSLHRFTDHCGGVKALAWSP 199
E +GG DN+V+IW+ + + + H V+ +AWSP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 200 HQV--NVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSAS 257
+ + +A+ +D IW K +L F
Sbjct: 215 TVLLRSYMASVS--QDRTCIIWTQDNEQ----------------GPWKKTLLKEEKFP-- 254
Query: 258 GDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ S S G +A +G D + W+
Sbjct: 255 ------------------------DVLWRASWSLSGNVLALSGGDNKVTLWKE 283
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 2e-13
Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 38/195 (19%)
Query: 141 KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH 200
AH+ + G +A+ D ++I+E + K + T H G V + W+
Sbjct: 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEG-ETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 201 QV-NVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS------GHG 253
+ +LA+ DG + IW + G QI H + S +G
Sbjct: 65 KFGTILASCS--YDGKVMIWKEENGRWS-------QIAVHAV--HSASVNSVQWAPHEYG 113
Query: 254 F---SASGDGNKLCLWKYP--NMTKVGELQ-------------SSNSRILDLSQSPDGLT 295
AS DG K+ + ++ T + ++ + + + +
Sbjct: 114 PMLLVASSDG-KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK 172
Query: 296 VATAGADETIRFWEA 310
T GAD ++ W+
Sbjct: 173 FVTGGADNLVKIWKY 187
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 3e-05
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 40 LWKWENGK---VKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-KLVRN 95
+W +N + K LL+ D SWS LA+ D+K+ LW K
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPA 292
Query: 96 LEGH 99
E H
Sbjct: 293 GEVH 296
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 3e-26
Identities = 50/275 (18%), Positives = 89/275 (32%), Gaps = 33/275 (12%)
Query: 58 DDYPTSVSWSHDA---KTLAVGYMDSKLQLWDAETS--KLVRNLEGHHRRVATSSWNHWN 112
DD +S+S L G + ++ W+ + S + + + H V W+ +
Sbjct: 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-D 97
Query: 113 GHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKW--SNEGNLLASGGDDNVVRI 170
G + + S DK+ D+ + + I H V + W + + + +G D ++
Sbjct: 98 GSKVFTASCDKTAKMWDLSSNQAIQ--IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKF 155
Query: 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI 230
W+ SS + A P V +AT + Q
Sbjct: 156 WD---TRSSNPMMVLQLPERCYCADVIYPMAV--VATAER--GLIVYQLENQPSEFRRIE 208
Query: 231 DA-KAQICGLEWNRHHKEILSGHGFSASGDG-NKLCLWKYPNMTKVG---ELQSSNSRIL 285
K Q + + + +G S +G + PN K + SN
Sbjct: 209 SPLKHQHRCVAIFKDKQNKPTGFA-LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT 267
Query: 286 DLSQ----------SPDGLTVATAGADETIRFWEA 310
Q P T+AT G+D FW+
Sbjct: 268 SAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK 302
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-24
Identities = 43/291 (14%), Positives = 89/291 (30%), Gaps = 24/291 (8%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
W+ ++ V WS D + D ++WD +++ ++ + H
Sbjct: 68 CWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQH 126
Query: 100 HRRVATSSWNHW-NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNL 158
V T W N + +GS DK++ D R SN + ++ C +
Sbjct: 127 DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV-LQLPERCYCADVIYPMA-V 184
Query: 159 LASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP---HQVNVLATGGGREDGC 215
+A+ +V E S+ + + +A ++ A G +G
Sbjct: 185 VATAERGLIVYQLEN---QPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI--EGR 239
Query: 216 IKIWNVQKGTCIHGIDA----KAQICGLEWNRHHKEILS-------GHGFSASGDGNKLC 264
+ I + ++ + + G + DG
Sbjct: 240 VAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FS 298
Query: 265 LWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSG 315
W TK+ + + I + +G A A + + + E + P
Sbjct: 299 FWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQK 349
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 8e-20
Identities = 33/262 (12%), Positives = 76/262 (29%), Gaps = 39/262 (14%)
Query: 62 TSVSWSHDAKTL-AVGYMDSKLQLWDAETSKLVRNLEGHHRRVATS---SWNHWNGHILT 117
T+ + ++ D+ + D E + S G+ L
Sbjct: 6 TTSGFGTSGTSMFGSATTDNHNPMKDIEV------TSSPDDSI-GCLSFSPPTLPGNFLI 58
Query: 118 SGSKDKSIINHDVRVSNNVTS-CIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM 176
+GS + +V+ S + H+G V + WS++G+ + + D ++W+
Sbjct: 59 AGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL--- 115
Query: 177 SSSKSLHRFTDHCGGVKALAWSPH-QVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ 235
SS + H VK + W + + TG D +K W+ + + +
Sbjct: 116 -SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGS--WDKTLKFWDTRSSNPMMVL----- 167
Query: 236 ICGLEWNRHHKEI----LSGHGFSASGDGNK-LCLWKYPNMTKVGELQSSNSRILDLSQS 290
+ + A+ + + + + ++
Sbjct: 168 ------QLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIF 221
Query: 291 PDGLT----VATAGADETIRFW 308
D A + +
Sbjct: 222 KDKQNKPTGFALGSIEGRVAIH 243
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 7e-17
Identities = 42/206 (20%), Positives = 67/206 (32%), Gaps = 31/206 (15%)
Query: 114 HILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWS---NEGNLLASGGDDNVVRI 170
+ S + D D+ V++ + + L +S GN L +G N VR
Sbjct: 16 SMFGSATTDNHNPMKDIEVTS-------SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRC 68
Query: 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI--- 227
WE S H G V + WS + + T D K+W++ I
Sbjct: 69 WEVQD-SGQTIPKAQQMHTGPVLDVCWSDDG-SKVFTAS--CDKTAKMWDLSSNQAIQIA 124
Query: 228 -HGIDAKAQICGLEWNRH--HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRI 284
H A + + W + + +++G S D L W + + LQ R
Sbjct: 125 QH----DAPVKTIHWIKAPNYSCVMTG-----SWD-KTLKFWDTRSSNPMMVLQ-LPERC 173
Query: 285 LDLSQSPDGLTVATAGADETIRFWEA 310
VATA + E
Sbjct: 174 YCADVIYPMAVVATAERGLIVYQLEN 199
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 4e-26
Identities = 38/306 (12%), Positives = 92/306 (30%), Gaps = 40/306 (13%)
Query: 50 KLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEG---HHRRVATS 106
++ Q P DY + + L + D L ++ + +L + +
Sbjct: 5 QIEQAP--KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Query: 107 SWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKW-SNEGNLLASGGDD 165
++ + G+ I+ D+ + + + + + + L + D
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLI-GSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121
Query: 166 NVVRIW-ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224
++ + R+ ++ + VK ++ + G + ++ + +
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI-VGMNNSQVQWFRLPLC 180
Query: 225 TCIHGIDAKAQICGLEWNRHHKEILSGHG---FSASGDGNKLCLWKYPNMTKVGELQSSN 281
+G + GL++ +L +S DG ++ + S
Sbjct: 181 EDDNG---TIEESGLKYQIRDVALLPKEQEGYACSSIDGR--VAVEFFDDQGDDYNSSKR 235
Query: 282 ----------------SRILDLSQSPDGLTVATAGADETIRFWEAFG-------PSGDED 318
+ + SP + TAG+D I W +ED
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED 295
Query: 319 SVSHLA 324
SV +A
Sbjct: 296 SVVKIA 301
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 2e-13
Identities = 15/179 (8%), Positives = 39/179 (21%), Gaps = 48/179 (26%)
Query: 147 VCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLA 206
+ +K +LL D + +++ + + L + + + + + +
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73
Query: 207 TGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLW 266
G G I ++ L+ + +C
Sbjct: 74 VGT--VQGEILKVDLIGSPSFQ-------------------ALTNN-----EANLGICRI 107
Query: 267 KYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAG 325
+ A D I + +V +L
Sbjct: 108 ----------------------CKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 1e-25
Identities = 60/298 (20%), Positives = 91/298 (30%), Gaps = 73/298 (24%)
Query: 46 GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE--TSKLVRNLEGHHRRV 103
G + + ++ + K LA D +++++ E T KL+ L GH V
Sbjct: 1 GSMVVIAN--AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV 58
Query: 104 ATSSWNH-WNGHILTSGSKDKSIINHDVRVSNNVTSCI---KAHSGEVCGLKWS--NEGN 157
W H G IL S S D ++ N S I HS V ++W+ G
Sbjct: 59 WRVDWAHPKFGTILASCSYDGKVLIWKE--ENGRWSQIAVHAVHSASVNSVQWAPHEYGP 116
Query: 158 LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNV------------L 205
LL D V + E K + + S H GV + +W+P +
Sbjct: 117 LLLVASSDGKVSVVE-FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 175
Query: 206 ATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265
TGG D +KIW + L GH
Sbjct: 176 VTGGA--DNLVKIWKYNSDA---------------QTYVLESTLEGH------------- 205
Query: 266 WKYPNMTKVGELQSSNSRILDLSQSPDGL---TVATAGADETIRFWEAFGPSGDEDSV 320
+ + D++ SP L +A+ D T W G
Sbjct: 206 ---------------SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT 248
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 3e-25
Identities = 54/293 (18%), Positives = 93/293 (31%), Gaps = 66/293 (22%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDA--KTLAVGYMDSKLQLWDAETSKL--VRN 95
+++ E K + + G + V W+H LA D K+ +W E + +
Sbjct: 37 IFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV 96
Query: 96 LEGHHRRVATSSWN-HWNGHILTSGSKDKSIINHDVRVSNNVTSCI-KAHSGEVCGLKWS 153
H V + W H G +L S D + + + + + I AH+ V W+
Sbjct: 97 HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 156
Query: 154 -------------NEGNLLASGGDDNVVRIWERSKMSSS-KSLHRFTDHCGGVKALAWSP 199
E +GG DN+V+IW+ + + + H V+ +AWSP
Sbjct: 157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216
Query: 200 HQV--NVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSAS 257
+ + LA+ +D IW K +L F
Sbjct: 217 TVLLRSYLASVS--QDRTCIIWTQDNEQ----------------GPWKKTLLKEEKFP-- 256
Query: 258 GDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ S S G +A +G D + W+
Sbjct: 257 ------------------------DVLWRASWSLSGNVLALSGGDNKVTLWKE 285
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 2e-23
Identities = 53/285 (18%), Positives = 89/285 (31%), Gaps = 45/285 (15%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWS--HDAKTLAVGYMDSKLQLWDAETSKLVRN-- 95
+WK ENG+ ++ SV W+ L V D K+ + + + +
Sbjct: 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 142
Query: 96 LEGHHRRVATSSWN------------HWNGHILTSGSKDKSIINHDVRVSNNVTSCI--- 140
++ H V ++SW +G D +
Sbjct: 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 202
Query: 141 KAHSGEVCGLKWS---NEGNLLASGGDDNVVRIW--ERSKMSSSKSLHRFTDHCGGVKAL 195
+ HS V + WS + LAS D IW + + K+L + +
Sbjct: 203 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 262
Query: 196 AWSPHQVNVLATGGGREDGCIKIWNVQ-KGTCIHGIDAKAQICGLEWNRHHKEILSGHGF 254
+WS NVLA GG D + +W +G E+ G G
Sbjct: 263 SWSL-SGNVLALSGG--DNKVTLWKENLEGKW----------------EPAGEVHQGGGG 303
Query: 255 SASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATA 299
S G + P ++ L S + +D ++ TA
Sbjct: 304 SGGGG-ATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFTA 347
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 19/119 (15%), Positives = 29/119 (24%), Gaps = 35/119 (29%)
Query: 40 LWKWENGK---VKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLW----------- 85
+W +N + K LL+ D SWS LA+ D+K+ LW
Sbjct: 235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPA 294
Query: 86 --------------------DAETSKLVRNLEGHHRRV-ATSSWNHWNGHILTSGSKDK 123
D + L + S + K
Sbjct: 295 GEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFTASYTFAK 353
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 5e-25
Identities = 45/284 (15%), Positives = 97/284 (34%), Gaps = 50/284 (17%)
Query: 41 WKWENGKVKKLLQVPGEDDYPTSV-SWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
W+ ++++ + V +D + + G D+ +++WD T + R L GH
Sbjct: 116 WRCGRHSLQRI---HCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGH 172
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
V ++ ++ +GS D ++ DV + + + + H V L+++ ++
Sbjct: 173 TGSVLCLQ---YDERVIITGSSDSTVRVWDVN-TGEMLNTLIHHCEAVLHLRFN--NGMM 226
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219
+ D + +W+ + + H V + + + + G D IK+W
Sbjct: 227 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASG--DRTIKVW 281
Query: 220 NVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG-------------FSASGDGNKLCLW 266
N + L+GH S S D N + LW
Sbjct: 282 NTSTCEFVR-------------------TLNGHKRGIACLQYRDRLVVSGSSD-NTIRLW 321
Query: 267 KYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ L+ + + D + + D I+ W+
Sbjct: 322 DIECGACLRVLEGHEELVRCI--RFDNKRIVSGAYDGKIKVWDL 363
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 3e-23
Identities = 53/320 (16%), Positives = 108/320 (33%), Gaps = 79/320 (24%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+W + K++L G + +D + + G DS +++WD T +++ L H
Sbjct: 157 IWDKNTLECKRILT--GHTGSVLCLQ--YDERVIITGSSDSTVRVWDVNTGEMLNTLIHH 212
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT-SCIKA------HSGEVCGLKW 152
V +N ++ + SKD+SI V + + + I H V + +
Sbjct: 213 CEAVLHL---RFNNGMMVTCSKDRSI-----AVWDMASPTDITLRRVLVGHRAAVNVVDF 264
Query: 153 SNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE 212
+ S D +++W S+ + + H G+ L + + +G
Sbjct: 265 D--DKYIVSASGDRTIKVWN---TSTCEFVRTLNGHKRGIACLQYRDRL---VVSGS--S 314
Query: 213 DGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGF-------------SASGD 259
D I++W+++ G C+ +L GH S + D
Sbjct: 315 DNTIRLWDIECGACLR-------------------VLEGHEELVRCIRFDNKRIVSGAYD 355
Query: 260 GNKLCLW---------KYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
K+ +W + L + R+ L D + ++ D+TI W+
Sbjct: 356 -GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ--FDEFQIVSSSHDDTILIWDF 412
Query: 311 ------FGPSGDEDSVSHLA 324
S ++
Sbjct: 413 LNDPAAQAEPPRSPSRTYTY 432
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 1e-24
Identities = 42/272 (15%), Positives = 86/272 (31%), Gaps = 59/272 (21%)
Query: 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH---------------RRVATS 106
+ S+S D + D ++ + L +++ H R+ +
Sbjct: 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT 144
Query: 107 SWNH----WNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASG 162
W H S ++ S + S G L+A+G
Sbjct: 145 DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATG 203
Query: 163 GDDNVVRIWE---RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG-REDGCIKI 218
++ V+I E + + +S H ++ ++++ +SP ++LA GCI +
Sbjct: 204 FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITL 262
Query: 219 WNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ 278
+ + G I + + H
Sbjct: 263 YETEFGERIGSLSVPT------HSSQASLGEFAH-------------------------- 290
Query: 279 SSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+S ++ LS + G T+ +AG D +RFW+
Sbjct: 291 --SSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 8e-19
Identities = 45/289 (15%), Positives = 91/289 (31%), Gaps = 80/289 (27%)
Query: 40 LWKWENGKVKKLLQVP-GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEG 98
L +++ ++ P + TSV S +A G+ + +Q+ + T + + N E
Sbjct: 167 LNWSPTLELQGTVESPMTPSQFATSVDISER-GLIATGFNNGTVQISELSTLRPLYNFES 225
Query: 99 HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNL 158
H + +S + +K+S +G+L
Sbjct: 226 QHS--------------------------------------MINNSNSIRSVKFSPQGSL 247
Query: 159 LASGGDDN---VVRIWE----------RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVL 205
LA D N + ++E SS++ H V +L+++ L
Sbjct: 248 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETL 306
Query: 206 ATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSA-SGDGNKL- 263
+ G DG ++ W+V+ I N H +I A G+ L
Sbjct: 307 CSAGW--DGKLRFWDVKTKERIT-----------TLNMHCDDIEIEEDILAVDEHGDSLA 353
Query: 264 --CLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
++ + K + ++ D +IR++
Sbjct: 354 EPGVFDVKFLKKGWRSGMG---------ADLNESLCCVCLDRSIRWFRE 393
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 4e-09
Identities = 33/209 (15%), Positives = 67/209 (32%), Gaps = 40/209 (19%)
Query: 138 SCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL---HRFTDHCGGV-- 192
+ KAH ++ + + S D +++W+ + + + H G+
Sbjct: 10 NAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 67
Query: 193 ----KALAWSPHQVNVLATGG----------GREDGCIKIWNVQKGTCIHGIDAKAQICG 238
+A+ ++ ++AT RED K+ + K
Sbjct: 68 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD-MKKHSFWA 126
Query: 239 LEWNRHHKEILSGHGFSASGDG--------------NKLCLWKYPNMTKVGELQS---SN 281
L+W + +LS + G N L L P + G ++S +
Sbjct: 127 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 186
Query: 282 SRILDLSQSPDGLTVATAGADETIRFWEA 310
+ S G +AT + T++ E
Sbjct: 187 QFATSVDISERG-LIATGFNNGTVQISEL 214
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 97.6 bits (243), Expect = 6e-23
Identities = 42/326 (12%), Positives = 86/326 (26%), Gaps = 54/326 (16%)
Query: 40 LW---KWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK----- 91
+W + G+V T ++ + AV D ++ + +
Sbjct: 90 IWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV 149
Query: 92 -----------LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC- 139
++N + V ++ + +L + + +I D+R +
Sbjct: 150 KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE 209
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE-RSKMSSSKSLHRFTDHCGGVKALAWS 198
G V + E +L G ++ IW+ R + V+ +
Sbjct: 210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY 269
Query: 199 PHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASG 258
++ GG + IWN KG C + + E S F
Sbjct: 270 GKNSVIVV--GGSSKTFLTIWNFVKGHCQYAF------------INSDEQPSMEHFLP-- 313
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA-------- 310
L + + L + + T A +I +
Sbjct: 314 IEKGLEELNFCG--------IRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKA 365
Query: 311 -FGPSGDEDSVSHLAGLVSLKTSVIR 335
PS D +L + +
Sbjct: 366 VISPSRFSDVFIPTQVTANLTMLLRK 391
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 2e-22
Identities = 23/278 (8%), Positives = 74/278 (26%), Gaps = 40/278 (14%)
Query: 38 LFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97
+ ++ + ++++ +S+ + L +G + +WD + L+R+
Sbjct: 194 VIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS 253
Query: 98 GHH----RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWS 153
V + N I+ GS + + + + +
Sbjct: 254 FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV-KGHCQYAFINSDEQPSMEHFL 312
Query: 154 NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213
L + + + ++ S + +L T
Sbjct: 313 PIEKGLEELNFCGIRSLNA-------------------LSTISVSNDK--ILLTDE--AT 349
Query: 214 GCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273
I ++++ + + + ++ +A+ L K +
Sbjct: 350 SSIVMFSLNELSSSK------AVIS---PSRFSDVFIPTQVTANLT-MLLRKMKRTSTHS 399
Query: 274 VGELQSSNSRILDL--SQSPDGLTVATAGADETIRFWE 309
V + + I + + + + I ++
Sbjct: 400 VDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 3e-19
Identities = 27/255 (10%), Positives = 69/255 (27%), Gaps = 40/255 (15%)
Query: 85 WDAETSKLVRNLEGHH----RRVATSSWNHWNGHILTSGSKDKSI----INHDVRVSNNV 136
KL+ L + A S L +GS I + +
Sbjct: 47 MGNLRGKLIATLMENEPNSITSSAVSPGE---TPYLITGSDQGVIKIWNLKEIIVGEVYS 103
Query: 137 TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW-------------ERSKMSSSKSLH 183
+S S V + + A D + + + +L
Sbjct: 104 SSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLK 163
Query: 184 RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ---ICGLE 240
F + V+ A+ + ++L + I++++ + I+ + + +
Sbjct: 164 NFGKNEYAVRMRAFVNEEKSLLVALT--NLSRVIIFDIRTLERLQIIENSPRHGAVSSIC 221
Query: 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS-SNSRILDL----SQSPDGLT 295
+ ++ G + G + +W + ++ I + + +
Sbjct: 222 IDEECCVLILG-----TTRGI-IDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVI 275
Query: 296 VATAGADETIRFWEA 310
V + + W
Sbjct: 276 VVGGSSKTFLTIWNF 290
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 87.2 bits (215), Expect = 5e-19
Identities = 26/261 (9%), Positives = 78/261 (29%), Gaps = 45/261 (17%)
Query: 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHI 115
G P + ++ LA+ + ++ ++ + ++V LE + + G
Sbjct: 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRF--VKGIY 71
Query: 116 LTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK 175
L + ++ + +T+ G++ + + + G + + +++ +
Sbjct: 72 LVVINAKDTVYVLSLYSQKVLTT--VFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDR 129
Query: 176 MSSS--------KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI 227
S KS + ++ W+P + + + +++ +
Sbjct: 130 DQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY---EYVTLTYSLVENEIK 186
Query: 228 HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDL 287
+ G FS + + +++
Sbjct: 187 Q-----------SFIYELPPFAPGGDFSEKTN------------------EKRTPKVIQS 217
Query: 288 SQSPDGLTVATAGADETIRFW 308
P+ L + T D ++ FW
Sbjct: 218 LYHPNSLHIITIHEDNSLVFW 238
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 1e-08
Identities = 27/311 (8%), Positives = 76/311 (24%), Gaps = 46/311 (14%)
Query: 30 LAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET 89
+ + +++ + KV + VPG TS+ + +G + + ++D +
Sbjct: 73 VVINAKDTVYVLSLYSQKVLTTVFVPG---KITSIDTDASLDWMLIGLQNGSMIVYDIDR 129
Query: 90 -----------SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSII------------ 126
K + + WN + + + ++
Sbjct: 130 DQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSF 189
Query: 127 ----NHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL 182
+ + + +V + + + +DN + W+ +S +
Sbjct: 190 IYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD---ANSGHMI 246
Query: 183 HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWN 242
T + + + KI V + I +
Sbjct: 247 MARTVFETEI-------NVPQPDYIRDSSTN-AAKISKVYWMCENNPEYTSLLISHKSIS 298
Query: 243 RHHKEIL-----SGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVA 297
R + L + + + +N I+++ P
Sbjct: 299 RGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYF 358
Query: 298 TAGADETIRFW 308
+ +
Sbjct: 359 AGCHNPGLILL 369
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 3e-08
Identities = 27/267 (10%), Positives = 72/267 (26%), Gaps = 23/267 (8%)
Query: 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHI 115
+ ++ + + D+ L WDA + ++ + N
Sbjct: 209 KRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFE-----TEINVPQPDY 263
Query: 116 LTSGSKDKSIINH---DVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172
+ S + + I+ + TS + +H G S L ++
Sbjct: 264 IRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEG 323
Query: 173 RSKMSSSKSLHR--FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI 230
++ + + + P Q A + + + + G I +
Sbjct: 324 MKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGC---HNPGLILLILGNGE-IETM 379
Query: 231 DAKAQICGLEWNRHHKEI--LSGHGFSASGDGNKLCLWKYPNMTKVGELQSS-----NSR 283
+ I + + + + L ++ LW + +
Sbjct: 380 LYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLW--LGALSAAQNKDYLLKGGVRT 437
Query: 284 ILDLSQSPDGLTVATAGADETIRFWEA 310
+ G T ++ ++R ++A
Sbjct: 438 KRQKLPAEYGTAFITGHSNGSVRIYDA 464
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 7e-06
Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 16/156 (10%)
Query: 36 PVLFLWKWENGKVKKLLQVPG-----EDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAET 89
P L L NG+++ +L G +P ++SW T ++ + +KL L
Sbjct: 364 PGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSA 423
Query: 90 SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI--------- 140
++ L R G +G + S+ +D + +
Sbjct: 424 AQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTL 483
Query: 141 -KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK 175
KA V + ++ E LA + V +++
Sbjct: 484 NKAKELAVDKISFAAETLELAVSIETGDVVLFKYEV 519
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 82.1 bits (202), Expect = 2e-17
Identities = 34/290 (11%), Positives = 79/290 (27%), Gaps = 52/290 (17%)
Query: 62 TSVSWS--HDAKTLAVGYMDSKLQLWDAETSKLVR---NLEGHHRRVATSSWNHWNGHIL 116
+ W +A + D ++LW NL+ R + +
Sbjct: 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTT-VTTLRVP 155
Query: 117 TSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW----- 171
D + R+ AH+ + + +++ S DD + +W
Sbjct: 156 VFRPMDLMVEASPRRI------FANAHTYHINSISINSDYETYLSA-DDLRINLWHLEIT 208
Query: 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID 231
+RS + + A + P+ N G I++ +++ D
Sbjct: 209 DRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS--SKGTIRLCDMRASALC---D 263
Query: 232 AKAQICGLEWNRHHKEILSGHG-------FS------ASGDGNKLCLWKYPNMTKV---- 274
+++ + ++ S FS + D + +W +
Sbjct: 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETY 323
Query: 275 ---GELQSSNSRILDLSQ---------SPDGLTVATAGADETIRFWEAFG 312
L+S + + + V T + R ++
Sbjct: 324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNT 373
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 74.4 bits (182), Expect = 5e-15
Identities = 43/305 (14%), Positives = 91/305 (29%), Gaps = 60/305 (19%)
Query: 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV-- 93
PV + + + S+S + D +T D ++ LW E +
Sbjct: 155 PVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSAD-DLRINLWHLEITDRSFN 213
Query: 94 ------RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA----- 142
N+E + + ++ + + S +I D+R S K
Sbjct: 214 IVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPE 273
Query: 143 ----------HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGV 192
+ +K+S+ G + + D V++W+ + ++ + + H
Sbjct: 274 DPSNRSFFSEIISSISDVKFSHSGRYMMT-RDYLSVKVWDLNM--ENRPVETYQVHEYLR 330
Query: 193 KAL---------------AWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQIC 237
L W+ V TG + ++++ I ++
Sbjct: 331 SKLCSLYENDCIFDKFECCWNGSDSVV-MTGS--YNNFFRMFDRNTKRDITLEASRE--- 384
Query: 238 GLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVA 297
N + +L ASG K + + N +IL + P +A
Sbjct: 385 ----NNKPRTVLKPRKVCASGKRKKDEIS--------VDSLDFNKKILHTAWHPKENIIA 432
Query: 298 TAGAD 302
A +
Sbjct: 433 VATTN 437
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 72.1 bits (176), Expect = 3e-14
Identities = 44/331 (13%), Positives = 95/331 (28%), Gaps = 60/331 (18%)
Query: 30 LAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET 89
+A A G W + K V E D ++V ++H + LA G ++ ++ E
Sbjct: 1 MAGAGGGNDIQWCFSQVKGAVDDDV-AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQ 59
Query: 90 SKLVRNLEGHHRRVATSSWNHW------------------------NGHILTSGSKDKSI 125
+++ V ++ +H N + DK+I
Sbjct: 60 ENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTI 119
Query: 126 INHDVRVSN--NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLH 183
+ + +K G + D +V R + H
Sbjct: 120 KLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF---ANAH 176
Query: 184 RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI---------DAKA 234
+ + ++ + + +D I +W+++ I +
Sbjct: 177 TYHINS-----ISINSDY-ETYLSA---DDLRINLWHLEITDRSFNIVDIKPANMEELTE 227
Query: 235 QICGLEWNRHHKEIL---SGHGF--------SASGDGNKLCLWKYPNMTKVGELQSSNSR 283
I E++ + S G SA D + + + + S
Sbjct: 228 VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISS 287
Query: 284 ILDLSQSPDGLTVATAGADETIRFWEAFGPS 314
I D+ S G + T +++ W+ +
Sbjct: 288 ISDVKFSHSGRYMMT-RDYLSVKVWDLNMEN 317
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 3e-04
Identities = 13/105 (12%), Positives = 34/105 (32%), Gaps = 12/105 (11%)
Query: 63 SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD 122
W+ + G ++ +++D T + + + + SG +
Sbjct: 347 ECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLK--PRKVCASGKRK 404
Query: 123 KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNV 167
K I+ D + ++ W + N++A +N+
Sbjct: 405 KDEISVDSL----------DFNKKILHTAWHPKENIIAVATTNNL 439
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 4e-16
Identities = 32/304 (10%), Positives = 76/304 (25%), Gaps = 70/304 (23%)
Query: 27 NNVLAVALGPVLFLWKWENGKVKKLL--------------QVPGEDDYPTSVSWSHDAKT 72
+++ + + +K+++ + ++ S ++ K
Sbjct: 16 GSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKK 75
Query: 73 LAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV 132
L ++ A+ + + ++ DKS++ DV
Sbjct: 76 LKSN-KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDK 134
Query: 133 SN-NVTSCIK--AHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHR-FTDH 188
++ NV K S + + + + V + + + K H
Sbjct: 135 TSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH 194
Query: 189 CGGVKALAWSP--HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHK 246
+ + + T D IKI + + +
Sbjct: 195 VSMLTDVHLIKDSDGHQFIITSD--RDEHIKISHYPQCFIVDK----------------- 235
Query: 247 EILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIR 306
L GH + + D L + +AG D+ I
Sbjct: 236 -WLFGH----------------------------KHFVSSICCGKDYL-LLSAGGDDKIF 265
Query: 307 FWEA 310
W+
Sbjct: 266 AWDW 269
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 72.8 bits (178), Expect = 2e-14
Identities = 43/314 (13%), Positives = 90/314 (28%), Gaps = 28/314 (8%)
Query: 40 LWKWENGKVKKLLQVPGED--DYPTSVSWSHDAKTLAVGYMDSKLQLWD----AETSKLV 93
++ + L P ++S + D T+ + + D E
Sbjct: 129 VFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQ 188
Query: 94 RNLEGHHRRVATSSW--NHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLK 151
+ GH + + + + +D+ I V + H V +
Sbjct: 189 EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSIC 248
Query: 152 WSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGR 211
+ LL S G D+ + W+ + K+L F D+ +K H
Sbjct: 249 CGKDY-LLLSAGGDDKIFAWD---WKTGKNLSTF-DYNSLIKPYLNDQHLAPPRFQNENN 303
Query: 212 EDGCI---KIWNVQKGTCIH-GIDAKAQICGLEWNRHHKEILSGH----------GFSAS 257
+ KI + + ++A I LE + K L+ SA
Sbjct: 304 DIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAH 363
Query: 258 GDGNKLCLW-KYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316
D ++ L K + + + + + S + +
Sbjct: 364 NDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVVNNEKSNEFDSAIIQSVQGDSNLVTK 423
Query: 317 EDSVSHLAGLVSLK 330
++ + L + SL+
Sbjct: 424 KEEIYPLYNVSSLR 437
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 1e-07
Identities = 32/195 (16%), Positives = 68/195 (34%), Gaps = 14/195 (7%)
Query: 150 LKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209
L S +G+L+ + N + ++ + + +++D ++ + + +
Sbjct: 10 LLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSE 68
Query: 210 GREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS------GHGFSASGDGNK- 262
+ K KG I AK GL + I + A D +K
Sbjct: 69 NENEN--KKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKS 126
Query: 263 LCLWKY----PNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED 318
L ++ N+ K+ + + R +S + D TV A + + ++
Sbjct: 127 LLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF 186
Query: 319 SVSHLAGLVSLKTSV 333
+ + G VS+ T V
Sbjct: 187 TQEPILGHVSMLTDV 201
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 7e-16
Identities = 23/290 (7%), Positives = 72/290 (24%), Gaps = 71/290 (24%)
Query: 38 LFLWKWENGKVKKLLQVPGEDDYPTSVSWS------HDAKTLAVGYMDSKLQLWDAETSK 91
+F K+ + + W H L+ + + + +
Sbjct: 187 IFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA 246
Query: 92 LVRNLEGHHRRVATS---------SWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA 142
++ + + + +++ + + G K+ + D+ + +
Sbjct: 247 TDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQV 306
Query: 143 HSGEVCGLKW---SNEGNLLASGGDDNVVRIWE-RSKMSSSKSLHRFTDHCGGVKALAWS 198
H + + E ++++ D I+ + ++ ++ RF + + +
Sbjct: 307 HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF--RGSNLVPVVYC 364
Query: 199 PHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASG 258
P + + ++ + +H
Sbjct: 365 PQIYSYIY---SDGASSLRAVPSRAAFAVH------------------------------ 391
Query: 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
L S + I + S V AD ++
Sbjct: 392 -----------------PLVSRETTITAIGVSRLHPMVLAGSADGSLIIT 424
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 7e-10
Identities = 21/187 (11%), Positives = 52/187 (27%), Gaps = 9/187 (4%)
Query: 38 LFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97
+++ ++ K V + + S L+ + + V L
Sbjct: 335 FYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV 394
Query: 98 GHHRRVATSSWNHWNGHILTSGSKDKSII--NHDVRVSNNVTSCIKAH-SGEVCGLKWSN 154
+ + + +L +GS D S+I N R+ + + + S + +S
Sbjct: 395 SRETTITAIGVSRLHPMVL-AGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSI 453
Query: 155 EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG 214
+ + V + S + H + W+ G
Sbjct: 454 KDDKYRIDSSYEV-----YPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAG 508
Query: 215 CIKIWNV 221
+ + +
Sbjct: 509 LLTLEYL 515
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 3e-07
Identities = 30/248 (12%), Positives = 63/248 (25%), Gaps = 22/248 (8%)
Query: 97 EGHHRRVATSSWNHWNGHILTSGSKDKSI---INHDVRVSNNVTSCIKAHSGEVCGLKWS 153
G + G I G I + + + +
Sbjct: 111 TGDKIEFPVLANGKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLN 170
Query: 154 NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDH-CGGVKALAWSP-----HQVNVLAT 207
+ + ++I++ + + + H G V L W H V L+
Sbjct: 171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSF 230
Query: 208 GGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGF------SASGDGN 261
+G I + + + L + I + +G
Sbjct: 231 VSQ--EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNG- 287
Query: 262 KLCLWKYPNMTK-VGELQSSNSRILDLSQ---SPDGLTVATAGADETIRFWEAFGPSGDE 317
+ + + Q +S IL +S + V+T D + + +
Sbjct: 288 FVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK 347
Query: 318 DSVSHLAG 325
+VS G
Sbjct: 348 TTVSRFRG 355
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 76.2 bits (187), Expect = 8e-16
Identities = 40/278 (14%), Positives = 85/278 (30%), Gaps = 22/278 (7%)
Query: 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK 121
T ++ D L + ++++ + + E H ++ H ++
Sbjct: 23 TDYEFNQDQSCLILS-TLKSFEIYNVHPVAHIMSQEMRH--LSKVRMLHRTNYVAFVTGV 79
Query: 122 DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS 181
+ + D V L S E ++ S GD V + +
Sbjct: 80 KEVVHIWDD--VKKQDVSRIKVDAPVKDLFLSRE-FIVVSYGDVISVFKFGNPWKRITDD 136
Query: 182 LHRFTDHCGGVKALAWSPH------QVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KA 234
+ L +S + L + G + I A
Sbjct: 137 IRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN 196
Query: 235 QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ--SSNSRILDLSQSPD 292
I + NR + + S DG + ++K + V E + + ++D+ S D
Sbjct: 197 PIKMVRLNRKSDMV-----ATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTD 251
Query: 293 GLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLK 330
G +A T+ +E + ++ L G +++K
Sbjct: 252 GSKLAVVSDKWTLHVFEI--FNDQDNKRHALKGWINMK 287
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 3e-11
Identities = 23/178 (12%), Positives = 51/178 (28%), Gaps = 21/178 (11%)
Query: 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILT 117
+ + + + + D + ++ H + N ++
Sbjct: 155 EFNLGQIHITKLQSSGSATTQDQGV--QQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVA 211
Query: 118 SGSKDKSIINHDVRVSNNVT-SCIK-----AHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171
+ S+D +II RV ++ +V +KWS +G+ LA D + ++
Sbjct: 212 TCSQDGTII----RVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVF 267
Query: 172 E--------RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV 221
E R + ++ F V E + +W
Sbjct: 268 EIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPH 325
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 7e-11
Identities = 37/302 (12%), Positives = 81/302 (26%), Gaps = 60/302 (19%)
Query: 25 GRNNVLAVALGP--VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKL 82
R N +A G V+ +W + V ++ V +
Sbjct: 68 HRTNYVAFVTGVKEVVHIWDDVKKQDV------SRIKVDAPVKDLFLSREFIVVSYGDVI 121
Query: 83 QLWDAETSKLVRNLEGHHR---------RVATSSWNHWNGHILTSGSKDKSIINHDVRVS 133
++ + V ++ +N HI T S D V
Sbjct: 122 SVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHI-TKLQSSGSATTQDQGVQ 180
Query: 134 NNVTSC----IKAHSGEVCGLKWSNEGNLLASGGDDN-VVRIWERSKMSSSKSLHRFTDH 188
IKAH+ + ++ + + +++A+ D ++R+++ + R D
Sbjct: 181 QKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDR 240
Query: 189 CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEI 248
V + WS + LA + + ++ + K
Sbjct: 241 AD-VVDMKWSTDG-SKLAVVS--DKWTLHVFEIFNDQDNK-------------RHALKGW 283
Query: 249 LSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
++ F + S + L + + G +A + W
Sbjct: 284 INMKYFQSE--------------------WSLCNFKLSVDKHVRGCKIAWISESSLVVVW 323
Query: 309 EA 310
Sbjct: 324 PH 325
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 9e-09
Identities = 23/178 (12%), Positives = 52/178 (29%), Gaps = 25/178 (14%)
Query: 43 WENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKL-QLWDAETSKLVRNLEGHHR 101
+ + K + + + V + + +A D + +++ E LVR
Sbjct: 180 QQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLD 239
Query: 102 RVATSS--WNHWNGHILTSGSKDKSI----INHDVRVSNNVTSCI---KAHSGEV----- 147
R W+ +G L S ++ I +D + K E
Sbjct: 240 RADVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNF 298
Query: 148 -CGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFT---DHCGGVKALAWSPHQ 201
+ G +A + ++V +W ++ + F D + +
Sbjct: 299 KLSVDKHVRGCKIAWISESSLVVVW-----PHTRMIETFKVVFDDEMERWLIQMDQRE 351
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 9e-08
Identities = 26/216 (12%), Positives = 54/216 (25%), Gaps = 56/216 (25%)
Query: 143 HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQV 202
S V +++ + + L I+ + H + + +
Sbjct: 18 VSNPVTDYEFNQDQSCLILS-TLKSFEIY-----NVHPVAHIMSQEMRHLSKVRMLHRTN 71
Query: 203 NVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNR------------------- 243
V G + IW+ K + I A + L +R
Sbjct: 72 YVAFVTGV--KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNP 129
Query: 244 -----------------HHKEILSGH-----------GFSASGDGNKLCLWKYPNMTKVG 275
+ + S S S + + + K
Sbjct: 130 WKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGV 189
Query: 276 ELQSSNSRILDLSQSPDGLTVATAGADET-IRFWEA 310
+++ + I + + VAT D T IR ++
Sbjct: 190 LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKT 225
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 7e-13
Identities = 31/171 (18%), Positives = 51/171 (29%), Gaps = 19/171 (11%)
Query: 61 PTSVSWSHDAKTLAVGYM----DSKLQLWDAET-----------SKLVRNLEGHHRRVAT 105
++ S D TL+ M S + +D T + L+ V
Sbjct: 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVID 154
Query: 106 SSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD 165
WN ++ D SI V + V + + V + WS +G LA G +
Sbjct: 155 MKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA-TLPSTVAVTSVCWSPKGKQLAVGKQN 213
Query: 166 NVVRIWERS---KMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213
V + + K +DH V + W V +
Sbjct: 214 GTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 1e-08
Identities = 27/184 (14%), Positives = 57/184 (30%), Gaps = 31/184 (16%)
Query: 150 LKWSNEGNLLASGGDDNVVRIWERSKMSSSKS-----------LHRFTDHCGGVKALAWS 198
L SN+ L+ +GG + ++ + +K + LA S
Sbjct: 42 LAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALS 101
Query: 199 PHQVNVLATG--GGREDGCIKIWNVQKGTCIH------------GIDAKAQICGLEWNRH 244
L+ I ++V+ + DA + ++WN
Sbjct: 102 CDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT 160
Query: 245 HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADET 304
+++ DG+ + + + KV S + + SP G +A + T
Sbjct: 161 VPSMVA----VCLADGS-IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT 215
Query: 305 IRFW 308
+ +
Sbjct: 216 VVQY 219
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 44.9 bits (105), Expect = 2e-05
Identities = 22/155 (14%), Positives = 41/155 (26%), Gaps = 18/155 (11%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL--- 96
+ + + K+ TSV WS K LAVG + + + +
Sbjct: 174 IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPP 233
Query: 97 ---EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWS 153
H RV W + + D ++ V + E +
Sbjct: 234 FYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP-----KKEEKHPEIFV 288
Query: 154 NEGNLLASGGDDN-------VVRIWERSKMSSSKS 181
N + + W+ +S+ S
Sbjct: 289 NFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAS 323
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Length = 337 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 4e-05
Identities = 37/302 (12%), Positives = 82/302 (27%), Gaps = 39/302 (12%)
Query: 38 LFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAV-GYMDSKLQLWDAETSKLVRNL 96
L + E V K++ + P + + L D T + + +
Sbjct: 13 LVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72
Query: 97 E----GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEV----- 147
+ + + +G L + V + A +
Sbjct: 73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132
Query: 148 -----CGLKWSNEGNLLASGGDDNVV--------------RIWERSKMSS--SKSLHRFT 186
L W+ +G+ L G D V + WE + ++
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192
Query: 187 DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHK 246
+ G + ++ + A G + +++ G + + +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTG-LLTMDLETGE------MAMREVRIMDVFYFS 245
Query: 247 EILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIR 306
++ A G N L + + + +S ++ S DG TV GA +
Sbjct: 246 TAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYY-SVNVSTDGSTVWLGGALGDLA 304
Query: 307 FW 308
+
Sbjct: 305 AY 306
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 38 LFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD-----SKLQLWDAETSKL 92
+ ++ GK L ++ + T++SWS D L V ++ K+ +DAET +
Sbjct: 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF 296
Query: 93 VRNLE 97
VR L
Sbjct: 297 VRTLF 301
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 335 | |||
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.98 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.97 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.97 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.97 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.97 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.97 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.97 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.97 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.97 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.96 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.96 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.96 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.95 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.95 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.95 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.95 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.95 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.95 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.95 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.94 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.94 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.94 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.94 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.93 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.93 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.93 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.93 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.92 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.92 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.92 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.92 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.92 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.91 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.9 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.89 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.89 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.88 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.88 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.88 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.88 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.87 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.87 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.87 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.87 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.85 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.84 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.84 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.84 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.83 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.82 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.82 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.82 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.82 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.82 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.82 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.82 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.81 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.81 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.79 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.78 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.77 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.77 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.77 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.77 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.75 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.75 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.75 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.74 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.74 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.72 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.72 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.72 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.71 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.71 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.7 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.69 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.68 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.68 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.66 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.66 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.65 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.64 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.62 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.62 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.61 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.59 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.58 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.57 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.55 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.55 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.55 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.54 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.53 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.53 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.52 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.52 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.52 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.51 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.51 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.5 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.48 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.46 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.43 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.42 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.41 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.39 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.36 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.33 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.31 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.31 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.29 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.27 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.26 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.25 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.25 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.23 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.22 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.22 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.22 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.21 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.2 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.19 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.16 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.15 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.15 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 99.15 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 99.14 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.13 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.12 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.11 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.1 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.1 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.09 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.07 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.04 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.04 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.04 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.02 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.01 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.99 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.98 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.98 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.98 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.97 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.93 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.93 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.93 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.93 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.93 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.91 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.91 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.9 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.89 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.87 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.86 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.85 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.82 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.79 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.76 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.76 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.75 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.75 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 98.73 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.7 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.63 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.62 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.6 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.59 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.54 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.53 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.5 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.48 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.45 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.28 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.26 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 98.24 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 98.14 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 98.12 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.12 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 98.1 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 98.01 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 98.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 98.0 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.95 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.93 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.91 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 97.87 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.8 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.79 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.78 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.72 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.7 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.63 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.61 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 97.52 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.48 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.42 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.4 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.39 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.38 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 97.35 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.19 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 97.16 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.1 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.04 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.01 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.01 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.93 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.92 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.72 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.71 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.61 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.59 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.28 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.93 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.8 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.7 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 95.51 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.47 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.25 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 95.23 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 93.23 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 92.92 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 92.14 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 91.74 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 90.84 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.11 | |
| 3f7f_A | 729 | Nucleoporin NUP120; nuclear pore complex, macromol | 87.4 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 87.23 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 86.44 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 83.7 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 82.44 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 80.33 |
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-54 Score=368.94 Aligned_cols=317 Identities=45% Similarity=0.837 Sum_probs=285.0
Q ss_pred cccccccCCCCcccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcE
Q 019847 3 REARILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKL 82 (335)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (335)
.|++++++|.+.+|++++.++|+++.+++++.|++|+|||..+++....+.+.+|...|++++|+|+|++|++|+.||.|
T Consensus 92 ~p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v 171 (420)
T 4gga_A 92 LPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV 171 (420)
T ss_dssp SCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCceEEECCCCcccccceeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeE
Confidence 57899999999999999999999999999999999999999999998888888999999999999999999999999999
Q ss_pred EEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEE
Q 019847 83 QLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASG 162 (335)
Q Consensus 83 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (335)
++||+++++.+..+.+|...+.++.+ ++.+|++|+.|+.+++||..........+.+|...+..+.|+|++++++++
T Consensus 172 ~iWd~~~~~~~~~~~~h~~~v~~~s~---~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~ 248 (420)
T 4gga_A 172 QLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 248 (420)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEcCCCcEEEEEeCCCCceEEEee---CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeee
Confidence 99999999999999999999999988 568999999999999999998887788889999999999999999999999
Q ss_pred eCCCeEEEEEccCCCcc-cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEe
Q 019847 163 GDDNVVRIWERSKMSSS-KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEW 241 (335)
Q Consensus 163 ~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 241 (335)
+.|+.+++||....... ..+.....|...|.+++|+|++..++++++|+.|+.|++||++++++...+..+..+.++.|
T Consensus 249 ~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~ 328 (420)
T 4gga_A 249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW 328 (420)
T ss_dssp ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeee
Confidence 99999999998865432 34566678999999999999999999887777999999999999999999999999999999
Q ss_pred CCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccc
Q 019847 242 NRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVS 321 (335)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 321 (335)
+|++..++++. +..|+.|++||+.+++++.++.+|.+.|++++|+|||++|+||+.||+|+|||+.......+...
T Consensus 329 ~~~~~~lv~~s----g~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~ 404 (420)
T 4gga_A 329 SPHYKELISGH----GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRER 404 (420)
T ss_dssp ETTTTEEEEEE----CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-----
T ss_pred cCCCCeEEEEE----ecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhh
Confidence 99999998763 35799999999999999999999999999999999999999999999999999988665555544
Q ss_pred ccccc
Q 019847 322 HLAGL 326 (335)
Q Consensus 322 ~~~~i 326 (335)
+....
T Consensus 405 ~~~~~ 409 (420)
T 4gga_A 405 EKASA 409 (420)
T ss_dssp -----
T ss_pred ccCCc
Confidence 44433
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=339.20 Aligned_cols=304 Identities=47% Similarity=0.877 Sum_probs=278.2
Q ss_pred cccccccCCCCcccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcE
Q 019847 3 REARILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKL 82 (335)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (335)
.|+|+|++|.+.++++.++++|+++.+++++.|++|+|||+++++..+.+.+.+|...|++++|+|++++|++|+.||.|
T Consensus 12 ~p~rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v 91 (318)
T 4ggc_A 12 LPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV 91 (318)
T ss_dssp SCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCCEEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence 68999999999999999999999998999999999999999999998888888999999999999999999999999999
Q ss_pred EEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEE
Q 019847 83 QLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASG 162 (335)
Q Consensus 83 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (335)
++||+++++.+..+.+|...+.++.+ ++..+++++.++.+++|+..........+.+|...+..+.+++++++|+++
T Consensus 92 ~iw~~~~~~~~~~~~~h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 168 (318)
T 4ggc_A 92 QLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 168 (318)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred EEeecCCceeEEEecCccceEEEeec---CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEE
Confidence 99999999999999999998887766 568999999999999999998888788889999999999999999999999
Q ss_pred eCCCeEEEEEccCCCcc-cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEe
Q 019847 163 GDDNVVRIWERSKMSSS-KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEW 241 (335)
Q Consensus 163 ~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 241 (335)
+.||.|++||+++.+.. ........+.+.|.++.++|++..++..++++.++.|++||.+.............+..+.|
T Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~ 248 (318)
T 4ggc_A 169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW 248 (318)
T ss_dssp ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeee
Confidence 99999999999875432 23445566888999999999998888776667899999999999999988888999999999
Q ss_pred CCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 242 NRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+|.+..++++. ++.|+.|++||+++++++.++.+|.+.|++++|+|++++|++|+.||+|++||+...
T Consensus 249 ~~~~~~~~~~s----g~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 249 SPHYKELISGH----GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp ETTTTEEEEEE----CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred cccccceEEEE----EcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 99999988652 367999999999999999999999999999999999999999999999999999764
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-51 Score=335.12 Aligned_cols=285 Identities=20% Similarity=0.395 Sum_probs=257.8
Q ss_pred CcccccceeeeecCC------ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEe
Q 019847 13 LMEDYYSKVIDWGRN------NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 13 ~~~~~~~~~~~~~~~------~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 86 (335)
..+...+.+++|+++ .+++++.|+.|++|++++++......+.+|...|.+++|+|++.++++++.|+.|++||
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd 108 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 108 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 346778999999763 57888899999999999888766778899999999999999999999999999999999
Q ss_pred CCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC
Q 019847 87 AETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN 166 (335)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 166 (335)
+.+++.+..+..+...+.+++|+| ++++|++++.||.|++|+++++.. ...+..|...+.+++|+|++++|++++.||
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~-~~~~~~~~~~v~~~~~spdg~~lasg~~dg 186 (321)
T 3ow8_A 109 LENGKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKK-EYSLDTRGKFILSIAYSPDGKYLASGAIDG 186 (321)
T ss_dssp TTTTEEEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSE-EEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCCEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCce-eEEecCCCceEEEEEECCCCCEEEEEcCCC
Confidence 999999999999999999999999 999999999999999999997765 455677889999999999999999999999
Q ss_pred eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCC
Q 019847 167 VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHH 245 (335)
Q Consensus 167 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~ 245 (335)
.|++||+++ .+.+..+.+|..+|.+++|+|++. ++++++ .|+.|++||+++++....+..+ ..+.+++|+|++
T Consensus 187 ~i~iwd~~~---~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~ 260 (321)
T 3ow8_A 187 IINIFDIAT---GKLLHTLEGHAMPIRSLTFSPDSQ-LLVTAS--DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 260 (321)
T ss_dssp CEEEEETTT---TEEEEEECCCSSCCCEEEECTTSC-EEEEEC--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred eEEEEECCC---CcEEEEEcccCCceeEEEEcCCCC-EEEEEc--CCCeEEEEECCCcceeEEEcCCCCceEEEEECCCC
Confidence 999999876 455777888999999999999996 555555 8999999999999998888754 579999999999
Q ss_pred ceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 246 KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
.+++++ +.|+.|++||+.+++++..+.+|...|.+++|+|++++|++++.||.|++||..
T Consensus 261 ~~l~s~------s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 261 THFVSS------SSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SEEEEE------ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CEEEEE------eCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999887 779999999999999999999999999999999999999999999999999963
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-50 Score=341.42 Aligned_cols=282 Identities=24% Similarity=0.437 Sum_probs=254.2
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
+...+++++|+++ .+++++.|+.|++||+.+++... .+.+|...|.+++|+|++++|++|+.||+|++||+.+++.
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~--~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~ 184 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER--TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC 184 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE--EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE--EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 4567889999984 57778899999999999988644 5678999999999999999999999999999999999999
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 172 (335)
+..+.+|...|.+++|+| ++++|++|+.|+.|++||++++.. ...+.+|...|.++.++|++++|++|+.|+.|++||
T Consensus 185 ~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd 262 (410)
T 1vyh_C 185 IRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262 (410)
T ss_dssp EECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcE-EEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 999999999999999999 999999999999999999997665 566789999999999999999999999999999999
Q ss_pred ccCCCcccceeeccCCCCCeeEEEecCCC-------------------CcEEEEecCCCCCeEEEEECCCCceEEEeec-
Q 019847 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQ-------------------VNVLATGGGREDGCIKIWNVQKGTCIHGIDA- 232 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~- 232 (335)
++.. .....+.+|...|.+++|+|++ ..++++++ .|+.|++||+++++++..+..
T Consensus 263 ~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs--~D~~i~iwd~~~~~~~~~~~~h 337 (410)
T 1vyh_C 263 VATK---ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--RDKTIKMWDVSTGMCLMTLVGH 337 (410)
T ss_dssp TTTC---CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE--TTSEEEEEETTTTEEEEEEECC
T ss_pred CCCC---ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe--CCCeEEEEECCCCceEEEEECC
Confidence 8764 4566778899999999999973 23667766 899999999999999988875
Q ss_pred CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 233 KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
...+.+++|+|++++++++ +.|+.|++||+.+++.+..+.+|...|++++|+|++.+|++|+.||.|++|+++
T Consensus 338 ~~~v~~v~~~~~g~~l~s~------s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 338 DNWVRGVLFHSGGKFILSC------ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SSCEEEEEECSSSSCEEEE------ETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CCcEEEEEEcCCCCEEEEE------eCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 4579999999999999987 789999999999999999999999999999999999999999999999999863
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=337.07 Aligned_cols=307 Identities=39% Similarity=0.757 Sum_probs=271.3
Q ss_pred cccccccCCCCcccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcE
Q 019847 3 REARILDAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKL 82 (335)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (335)
.|.++++.+....++++.+++|+++.+++++.|+.|++||+.+++....... .|...|.+++|+|++++|++|+.||.|
T Consensus 80 ~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i 158 (401)
T 4aez_A 80 TPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAET-DESTYVASVKWSHDGSFLSVGLGNGLV 158 (401)
T ss_dssp SCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred CcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeec-CCCCCEEEEEECCCCCEEEEECCCCeE
Confidence 4667788888888999999999999999999999999999999987666554 388999999999999999999999999
Q ss_pred EEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEE
Q 019847 83 QLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASG 162 (335)
Q Consensus 83 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (335)
++||+.+++.+..+..|...|.+++| +++.|++++.||.|++||++........+..|...|.+++|+|++++|+++
T Consensus 159 ~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 235 (401)
T 4aez_A 159 DIYDVESQTKLRTMAGHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASG 235 (401)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred EEEECcCCeEEEEecCCCCceEEEEE---CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEE
Confidence 99999999999999999999999999 457999999999999999997677777888999999999999999999999
Q ss_pred eCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeC
Q 019847 163 GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWN 242 (335)
Q Consensus 163 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 242 (335)
+.||.|++||++. ...+..+..|...|.+++|+|++..++++++|+.|+.|++||+++++.+..+..+..+.+++|+
T Consensus 236 ~~d~~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s 312 (401)
T 4aez_A 236 GNDNVVQIWDARS---SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWS 312 (401)
T ss_dssp ETTSCEEEEETTC---SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEEC
T ss_pred eCCCeEEEccCCC---CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEEC
Confidence 9999999999886 3456677789999999999999999999976668999999999999999999999999999999
Q ss_pred CCCceeeeeeeeeeecCCCeEEEEECCCCceee--cccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcc
Q 019847 243 RHHKEILSGHGFSASGDGNKLCLWKYPNMTKVG--ELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSV 320 (335)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 320 (335)
|+++.+++.. +..|+.|++||+.+++... .+.+|...|.+++|+|++++|++++.||.|++|++..++......
T Consensus 313 ~~~~~l~~~~----g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 313 PHSKEIMSTH----GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp SSSSEEEEEE----CTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred CCCCeEEEEe----ecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 9999998741 2579999999999865544 467899999999999999999999999999999999887665443
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=323.25 Aligned_cols=278 Identities=19% Similarity=0.396 Sum_probs=246.3
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc--
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-- 90 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-- 90 (335)
+...+.+++|+++ .+++++.|+.|++||..+++... .++.|...|.+++|+|++++|++|+.|+.|++|++.++
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~ 131 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH--AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG 131 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE--EEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce--EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC
Confidence 4567889999984 57778899999999999887644 45678999999999999999999999999999999875
Q ss_pred --eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeE
Q 019847 91 --KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVV 168 (335)
Q Consensus 91 --~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (335)
+....+.+|...|.++.|++ ++ .+++++.|+.|++||++++.. ...+.+|...|.+++|+|++++|++|+.|+.|
T Consensus 132 ~~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v 208 (340)
T 1got_B 132 NVRVSRELAGHTGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208 (340)
T ss_dssp SCEEEEEEECCSSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred cceeEEEecCCCccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcE-EEEEcCCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 45667888999999999987 54 589999999999999986654 66678899999999999999999999999999
Q ss_pred EEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC---cEeEEEeCCCC
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA---QICGLEWNRHH 245 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~ 245 (335)
++||+++. .....+.+|...|.+++|+|++. ++++++ .|+.|++||+++++.+..+.++. .+.+++|+|++
T Consensus 209 ~~wd~~~~---~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g 282 (340)
T 1got_B 209 KLWDVREG---MCRQTFTGHESDINAICFFPNGN-AFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282 (340)
T ss_dssp EEEETTTC---SEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred EEEECCCC---eeEEEEcCCcCCEEEEEEcCCCC-EEEEEc--CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCC
Confidence 99998764 45777888999999999999996 455555 89999999999998888776543 69999999999
Q ss_pred ceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 246 KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
+++++| +.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.||.|++||
T Consensus 283 ~~l~~g------~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 283 RLLLAG------YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SEEEEE------ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEE------CCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999988 7799999999999999999999999999999999999999999999999996
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-48 Score=317.57 Aligned_cols=285 Identities=19% Similarity=0.349 Sum_probs=246.7
Q ss_pred CcccccceeeeecCC---ceEEEecCCeEEEEEecCCce---eeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEe
Q 019847 13 LMEDYYSKVIDWGRN---NVLAVALGPVLFLWKWENGKV---KKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 13 ~~~~~~~~~~~~~~~---~~~~~~~~~~i~vw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 86 (335)
..+...+.+++|+++ .+++++.|++|++|++..... .+...+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd 93 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD 93 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 346678899999863 477888999999999875332 23556789999999999999999999999999999999
Q ss_pred CCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecC------CCEEE
Q 019847 87 AETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNE------GNLLA 160 (335)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~ 160 (335)
+++++.+..+.+|...|.+++|+| ++.+|++|+.|+.|++||++ +. ....+.+|...|.+++|+|. +..++
T Consensus 94 ~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~-~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~ 170 (319)
T 3frx_A 94 VATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTII 170 (319)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETT-SC-EEEEECCCSSCEEEEEECCC------CCEEE
T ss_pred CCCCCeeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECC-CC-eEEEEeccCCcEEEEEEccCCCCCCCccEEE
Confidence 999999999999999999999999 99999999999999999996 33 45667889999999999984 44899
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEE
Q 019847 161 SGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLE 240 (335)
Q Consensus 161 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 240 (335)
+++.|+.|++||++. .+....+.+|...|.+++|+|++. ++++++ .|+.|++||+++++.+..+..+.++.+++
T Consensus 171 s~~~d~~i~~wd~~~---~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 244 (319)
T 3frx_A 171 SAGNDKMVKAWNLNQ---FQIEADFIGHNSNINTLTASPDGT-LIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244 (319)
T ss_dssp EEETTSCEEEEETTT---TEEEEEECCCCSCEEEEEECTTSS-EEEEEE--TTCEEEEEETTTTEEEEEEECCSCEEEEE
T ss_pred EEeCCCEEEEEECCc---chhheeecCCCCcEEEEEEcCCCC-EEEEEe--CCCeEEEEECCCCcEEEEecCCCcEEEEE
Confidence 999999999999876 345667788999999999999996 455554 89999999999999999999999999999
Q ss_pred eCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc--------CCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ--------SSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
|+|++..++++. ++.+++|++.....+..+. .|...+.+++|+|||++|++|+.||.|++||+.+
T Consensus 245 ~sp~~~~la~~~-------~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 245 FSPNRYWLAAAT-------ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp ECSSSSEEEEEE-------TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred EcCCCCEEEEEc-------CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 999999988762 5679999998876655543 3456789999999999999999999999999875
Q ss_pred C
Q 019847 313 P 313 (335)
Q Consensus 313 ~ 313 (335)
.
T Consensus 318 ~ 318 (319)
T 3frx_A 318 A 318 (319)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-48 Score=325.82 Aligned_cols=287 Identities=18% Similarity=0.364 Sum_probs=247.2
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce-
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK- 91 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~- 91 (335)
+...+.+++|+++ .+++++.|++|++||+.+++... .+..|...|.+++|+|++++|++|+.|+.+++||+.+..
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~--~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~ 142 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH--AIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQAD 142 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE--EEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSS
T ss_pred cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce--EEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcc
Confidence 4567899999984 58888899999999999887644 556899999999999999999999999999999987532
Q ss_pred ------eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE----eecCCCCEEEEEeec-CCCEEE
Q 019847 92 ------LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC----IKAHSGEVCGLKWSN-EGNLLA 160 (335)
Q Consensus 92 ------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~~i~~~~~~~-~~~~l~ 160 (335)
....+.+|...+.++.|.|..+..|++|+.|++|++||++++..+... ..+|...|.+++|++ ++++|+
T Consensus 143 ~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 222 (380)
T 3iz6_a 143 RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFI 222 (380)
T ss_dssp CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEE
T ss_pred ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEE
Confidence 345678899999999999966778999999999999999977654322 157899999999987 889999
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC------
Q 019847 161 SGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA------ 234 (335)
Q Consensus 161 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~------ 234 (335)
+|+.|+.|++||++.. ...+..+.+|.+.|.+++|+|++. ++++++ .|+.|++||+++++.+..+..+.
T Consensus 223 sgs~D~~v~~wd~~~~--~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s--~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 297 (380)
T 3iz6_a 223 SGSCDTTVRLWDLRIT--SRAVRTYHGHEGDINSVKFFPDGQ-RFGTGS--DDGTCRLFDMRTGHQLQVYNREPDRNDNE 297 (380)
T ss_dssp EEETTSCEEEEETTTT--CCCCEEECCCSSCCCEEEECTTSS-EEEEEC--SSSCEEEEETTTTEEEEEECCCCSSSCCS
T ss_pred EEECCCeEEEEECCCC--CcceEEECCcCCCeEEEEEecCCC-eEEEEc--CCCeEEEEECCCCcEEEEecccccccccc
Confidence 9999999999998743 245677888999999999999996 555555 89999999999999888775421
Q ss_pred --cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecc----cCCCCceeEeEEcCCCCEEEEEeCCCcEEEE
Q 019847 235 --QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL----QSSNSRILDLSQSPDGLTVATAGADETIRFW 308 (335)
Q Consensus 235 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw 308 (335)
.+.+++|+|+++++++| +.||.|++||..+++.+..+ .+|.+.|++++|+|+|++|++|+.||.|++|
T Consensus 298 ~~~v~~~~~s~~g~~l~~g------~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 298 LPIVTSVAFSISGRLLFAG------YSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp SCSCSEEEECSSSSEEEEE------CTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred cCceEEEEECCCCCEEEEE------ECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence 37899999999999988 77999999999998887766 6799999999999999999999999999999
Q ss_pred ecCCCC
Q 019847 309 EAFGPS 314 (335)
Q Consensus 309 ~~~~~~ 314 (335)
++...+
T Consensus 372 ~~~~~~ 377 (380)
T 3iz6_a 372 AFSGHR 377 (380)
T ss_dssp ECCSSS
T ss_pred ecCCCc
Confidence 998754
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-48 Score=315.78 Aligned_cols=269 Identities=16% Similarity=0.255 Sum_probs=237.0
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEec
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 130 (335)
...+.+|.+.|++++|+|++++|++|+.||.|++||+++++.+..+..|..+|.+++|+| ++++|++|+.|+.|++||+
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEET
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEEEC
Confidence 345668999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC
Q 019847 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210 (335)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 210 (335)
++++. ...+.+|...|.+++|+|++++|++|+.|++|++||++... .....+.+|...|.+++|+|++..++++++
T Consensus 85 ~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~--~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs- 160 (304)
T 2ynn_A 85 NTGEK-VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW--ALEQTFEGHEHFVMCVAFNPKDPSTFASGC- 160 (304)
T ss_dssp TTCCE-EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT--EEEEEECCCCSCEEEEEECTTCTTEEEEEE-
T ss_pred CCCcE-EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc--chhhhhcccCCcEEEEEECCCCCCEEEEEe-
Confidence 97765 56678999999999999999999999999999999987642 345667889999999999997666777777
Q ss_pred CCCCeEEEEECCCCceEEEeec--CCcEeEEEeCC--CCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeE
Q 019847 211 REDGCIKIWNVQKGTCIHGIDA--KAQICGLEWNR--HHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILD 286 (335)
Q Consensus 211 ~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 286 (335)
.|+.|++||++++.....+.. ...+..+.|+| ++.+++++ +.|+.|++||+++++++..+.+|...|.+
T Consensus 161 -~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~------s~D~~i~iWd~~~~~~~~~~~~h~~~v~~ 233 (304)
T 2ynn_A 161 -LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA------SDDLTIKIWDYQTKSCVATLEGHMSNVSF 233 (304)
T ss_dssp -TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEE------ETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred -CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEE------cCCCeEEEEeCCCCccceeeCCCCCCEEE
Confidence 899999999988877666543 35688888876 66778777 78999999999999999999999999999
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcccccccccccee
Q 019847 287 LSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 287 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~ 331 (335)
++|+|++++|++|+.||.|++||+.+.+....+..|...+.++.+
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~ 278 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIAT 278 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEE
Confidence 999999999999999999999999988776666666666665553
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-47 Score=316.93 Aligned_cols=290 Identities=20% Similarity=0.355 Sum_probs=238.2
Q ss_pred cceeeeecCC--ceEEEecCCeEEEEEecCCceeeEE-eecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc--ee
Q 019847 18 YSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLL-QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS--KL 92 (335)
Q Consensus 18 ~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~ 92 (335)
.+.+++|+++ .+++++.|+.|++||+++++..... ...+|...|.+++|+|++++|++|+.|+.+++|++.++ +.
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~ 97 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC 97 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence 6788999984 5777889999999999988754333 33689999999999999999999999999999998876 45
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe--eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN--VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
+..+.+|...|.+++|+| ++++|++|+.|+.|++||++.... ....+..|...|.+++|+|++++|++++.|+.|++
T Consensus 98 ~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~ 176 (345)
T 3fm0_A 98 VTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL 176 (345)
T ss_dssp EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEE
T ss_pred EEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEE
Confidence 778899999999999999 999999999999999999986543 35567789999999999999999999999999999
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC---------------ceEEEee--cC
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG---------------TCIHGID--AK 233 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~---------------~~~~~~~--~~ 233 (335)
||++... ......+.+|...|.+++|+|++.. +++++ .|+.|++||.... +++..+. +.
T Consensus 177 w~~~~~~-~~~~~~~~~h~~~v~~l~~sp~g~~-l~s~s--~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 252 (345)
T 3fm0_A 177 YREEEDD-WVCCATLEGHESTVWSLAFDPSGQR-LASCS--DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS 252 (345)
T ss_dssp EEEETTE-EEEEEEECCCSSCEEEEEECTTSSE-EEEEE--TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCS
T ss_pred EEecCCC-EEEEEEecCCCCceEEEEECCCCCE-EEEEe--CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCC
Confidence 9987532 2345677889999999999999965 55555 8999999996322 2233333 34
Q ss_pred CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce---------eecccCCCCceeEeEEcCCC-CEEEEEeCCC
Q 019847 234 AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK---------VGELQSSNSRILDLSQSPDG-LTVATAGADE 303 (335)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~---------~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg 303 (335)
..+.+++|+|++..++++ +.|+.|++|+...... .....+|...|++++|+|++ .+|++|+.||
T Consensus 253 ~~v~~v~~~~~~~~l~s~------~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg 326 (345)
T 3fm0_A 253 RTIYDIAWCQLTGALATA------CGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG 326 (345)
T ss_dssp SCEEEEEECTTTCCEEEE------ETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTS
T ss_pred CcEEEEEEecCCCEEEEE------eCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCC
Confidence 579999999999999887 6799999999875431 12346899999999999997 5999999999
Q ss_pred cEEEEecCCCCCCCC
Q 019847 304 TIRFWEAFGPSGDED 318 (335)
Q Consensus 304 ~v~iw~~~~~~~~~~ 318 (335)
.|++|++..++...+
T Consensus 327 ~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 327 EVAFWKYQRPEGLHH 341 (345)
T ss_dssp CEEEEEECC------
T ss_pred cEEEEEecCCCCccc
Confidence 999999998776543
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-48 Score=319.92 Aligned_cols=288 Identities=18% Similarity=0.197 Sum_probs=229.7
Q ss_pred cccceeeeecCC-ceEEEecCCeEEEEEecCCce---------eeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEE
Q 019847 16 DYYSKVIDWGRN-NVLAVALGPVLFLWKWENGKV---------KKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLW 85 (335)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (335)
+..+.+++|+++ .+++++.|+++++||...... ........|...|.+++|+|++ .|++|+.||.|+||
T Consensus 30 ~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lW 108 (344)
T 4gqb_B 30 ERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELW 108 (344)
T ss_dssp CSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred cCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEE
Confidence 456889999985 677777888888887431100 0001112356789999999985 68899999999999
Q ss_pred eCCCceeEee----ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCC-CEEE
Q 019847 86 DAETSKLVRN----LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG-NLLA 160 (335)
Q Consensus 86 ~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~ 160 (335)
|+++++.+.. ..+|...|++++|+| ++++|++|+.|++|++||+++++ ....+.+|...|.+++|+|++ .+|+
T Consensus 109 d~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~-~~~~~~~h~~~V~~~~~~~~~~~~l~ 186 (344)
T 4gqb_B 109 ELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQV-VLSSYRAHAAQVTCVAASPHKDSVFL 186 (344)
T ss_dssp EECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECSSCTTEEE
T ss_pred eccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCc-EEEEEcCcCCceEEEEecCCCCCcee
Confidence 9998875543 347999999999999 99999999999999999998654 467788999999999999987 5789
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEE
Q 019847 161 SGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGL 239 (335)
Q Consensus 161 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~ 239 (335)
+++.|+.|++||++.++....+. ...+...+.+++|+|++..++++++ .|+.|++||+++++++..+.. ...|.++
T Consensus 187 s~s~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~l~sg~--~dg~v~~wd~~~~~~~~~~~~h~~~v~~v 263 (344)
T 4gqb_B 187 SCSEDNRILLWDTRCPKPASQIG-CSAPGYLPTSLAWHPQQSEVFVFGD--ENGTVSLVDTKSTSCVLSSAVHSQCVTGL 263 (344)
T ss_dssp EEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEE--TTSEEEEEESCC--CCEEEECCSSCEEEE
T ss_pred eeccccccccccccccceeeeee-cceeeccceeeeecCCCCcceEEec--cCCcEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 99999999999998754322221 2345667999999998888888887 899999999999999988875 4689999
Q ss_pred EeCCCCc-eeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCC-EEEEEeCCCcEEEEecCCCCCC
Q 019847 240 EWNRHHK-EILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGL-TVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 240 ~~~~~~~-~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
+|+|++. +++++ +.|+.|++||+.+++.+ .+.+|.+.|++++|+|+++ +|++++.||+|++|++...+..
T Consensus 264 ~fsp~g~~~lasg------s~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 264 VFSPHSVPFLASL------SEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP 335 (344)
T ss_dssp EECSSSSCCEEEE------ETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred EEccCCCeEEEEE------eCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence 9999985 56666 78999999999988765 5689999999999999986 5679999999999999876543
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-47 Score=308.49 Aligned_cols=285 Identities=17% Similarity=0.255 Sum_probs=246.6
Q ss_pred cccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 14 MEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
.+...+.+++|+++ .+++++.|+.|++||+++++... .+..|..+|.+++|+|++++|++|+.|+.|++||+++++
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~ 88 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR--SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE 88 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE--EeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 34567899999984 47778899999999999887644 556889999999999999999999999999999999999
Q ss_pred eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEE
Q 019847 92 LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRI 170 (335)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i 170 (335)
.+..+.+|...|.+++|+| ++.+|++|+.|++|++||++++..+...+.+|...|.+++|+| ++.+|++|+.|+.|++
T Consensus 89 ~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~i 167 (304)
T 2ynn_A 89 KVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167 (304)
T ss_dssp EEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred EEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 9999999999999999999 9999999999999999999988777788889999999999999 6789999999999999
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCC-CcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCcee
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQ-VNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEI 248 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 248 (335)
||++..... ......|...+..+.|+|.. ..++++++ .|+.|++||+++++++..+..+ ..+.+++|+|++..+
T Consensus 168 wd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~s--~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 243 (304)
T 2ynn_A 168 WSLGQSTPN--FTLTTGQERGVNYVDYYPLPDKPYMITAS--DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243 (304)
T ss_dssp EETTCSSCS--EEEECCCTTCEEEEEECCSTTCCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEE
T ss_pred EECCCCCcc--ceeccCCcCcEEEEEEEEcCCCCEEEEEc--CCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEE
Confidence 998765432 22334566789999998742 24666666 8999999999999999998864 689999999999999
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCC--EEEEEeCCCcEEEEecCC
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGL--TVATAGADETIRFWEAFG 312 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~v~iw~~~~ 312 (335)
+++ +.|+.|++||..+++.+..+..|...+.+++|+|++. ++++|+.|| +.+|++..
T Consensus 244 ~s~------s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 244 ISG------SEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp EEE------ETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred EEE------cCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 887 7899999999999999999999999999999999875 577776554 66887765
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-47 Score=315.34 Aligned_cols=279 Identities=16% Similarity=0.329 Sum_probs=245.4
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc--
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-- 90 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-- 90 (335)
+...+.+++|+++ .+++++.|+.|++||..+++.... +..|...|.+++|+|++++|++|+.|+.+++|++...
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~--~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~ 140 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHA--VTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKN 140 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--EECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTT
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceE--EecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccc
Confidence 5567899999984 578888999999999988876544 4467889999999999999999999999999998643
Q ss_pred ----eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec--CCCEEEEEeC
Q 019847 91 ----KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN--EGNLLASGGD 164 (335)
Q Consensus 91 ----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~ 164 (335)
.....+..|...|.++.|+| ++..|++++.|++|++||+++++. ...+.+|...|.+++|+| ++++|++|+.
T Consensus 141 ~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~ 218 (354)
T 2pbi_B 141 ENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQL-LQSFHGHGADVLCLDLAPSETGNTFVSGGC 218 (354)
T ss_dssp CCSGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECCCSSCCEEEEEET
T ss_pred ccccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeE-EEEEcCCCCCeEEEEEEeCCCCCEEEEEeC
Confidence 34556778999999999999 899999999999999999987654 667889999999999988 5789999999
Q ss_pred CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC---CcEeEEEe
Q 019847 165 DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK---AQICGLEW 241 (335)
Q Consensus 165 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~ 241 (335)
||.|++||++++ +.+..+..|...|.+++|+|++. ++++++ .|+.|++||+++++.+..+..+ ..+.+++|
T Consensus 219 Dg~v~~wd~~~~---~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s--~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (354)
T 2pbi_B 219 DKKAMVWDMRSG---QCVQAFETHESDVNSVRYYPSGD-AFASGS--DDATCRLYDLRADREVAIYSKESIIFGASSVDF 292 (354)
T ss_dssp TSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred CCeEEEEECCCC---cEEEEecCCCCCeEEEEEeCCCC-EEEEEe--CCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence 999999998874 45777888999999999999996 555555 8999999999998887776543 36889999
Q ss_pred CCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 242 NRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
+|++.+++++ +.|+.|++||+.+++.+..+.+|...|++++|+|++++|++|+.||.|++|+
T Consensus 293 s~~g~~l~~g------~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 293 SLSGRLLFAG------YNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTSSEEEEE------ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eCCCCEEEEE------ECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999988 6799999999999999999999999999999999999999999999999996
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-47 Score=313.78 Aligned_cols=287 Identities=21% Similarity=0.327 Sum_probs=229.3
Q ss_pred ccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEee-cC-CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC---
Q 019847 15 EDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQV-PG-EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET--- 89 (335)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~--- 89 (335)
+...+.+++|+++.+++++.|+.|++||++++.......+ .+ |...|.+++|+|++++|++|+.|+.|++||++.
T Consensus 13 h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~ 92 (330)
T 2hes_X 13 YKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD 92 (330)
T ss_dssp CSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-----
T ss_pred CCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcC
Confidence 4567889999999888888999999999987643333334 34 999999999999999999999999999999853
Q ss_pred ----ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC---eeeEEeecCCCCEEEEEeecCCCEEEEE
Q 019847 90 ----SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN---NVTSCIKAHSGEVCGLKWSNEGNLLASG 162 (335)
Q Consensus 90 ----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (335)
.+.+..+.+|...|.+++|+| ++++|++|+.|+.|++||++... .....+.+|...|.+++|+|++++|+++
T Consensus 93 ~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~ 171 (330)
T 2hes_X 93 RTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS 171 (330)
T ss_dssp --CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred ccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEE
Confidence 356777889999999999999 99999999999999999995332 3456678899999999999999999999
Q ss_pred eCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCC-cEEEEecCCCCCeEEEEECCCC--------ceEEEee--
Q 019847 163 GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQV-NVLATGGGREDGCIKIWNVQKG--------TCIHGID-- 231 (335)
Q Consensus 163 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~g~~d~~i~i~d~~~~--------~~~~~~~-- 231 (335)
+.|+.|++||++... ...+..+.+|...|.+++|+|++. .++++++ .|+.|++||++.+ .+...+.
T Consensus 172 s~D~~i~iW~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
T 2hes_X 172 SYDDTVRIWKDYDDD-WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS--DDSTVRVWKYMGDDEDDQQEWVCEAILPDV 248 (330)
T ss_dssp ETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCSSSSCEEEEEE--TTSCEEEEEEEEECTTSCEEEEEEEECCSC
T ss_pred cCCCeEEEEECCCCC-eeEEEEccCCCCcEEEEEecCCCCeeEEEEEe--CCCeEEEEEecCCCccccceeEEeeecccc
Confidence 999999999987532 245777889999999999999842 4566666 8999999998754 3334443
Q ss_pred cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc--eee-cccCCCC-ceeEeEEcC--CCCEEEEEeCCCcE
Q 019847 232 AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT--KVG-ELQSSNS-RILDLSQSP--DGLTVATAGADETI 305 (335)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~--~~~-~~~~~~~-~i~~~~~~~--~~~~l~~~~~dg~v 305 (335)
+...+.+++|++++ .++++ +.|+.|++||..+++ ... ...+|.. .|.+++|+| ++++|++|+.||.|
T Consensus 249 h~~~v~~v~~s~~~-~l~s~------~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v 321 (330)
T 2hes_X 249 HKRQVYNVAWGFNG-LIASV------GADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIV 321 (330)
T ss_dssp CSSCEEEEEECTTS-CEEEE------ETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEE
T ss_pred cccceEEEEEcCCC-EEEEE------eCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcE
Confidence 45689999999765 56665 679999999988764 332 3457876 899999999 78999999999999
Q ss_pred EEEecCC
Q 019847 306 RFWEAFG 312 (335)
Q Consensus 306 ~iw~~~~ 312 (335)
++|++..
T Consensus 322 ~~W~~~~ 328 (330)
T 2hes_X 322 NFWSLEK 328 (330)
T ss_dssp EEEEC--
T ss_pred EEEEecc
Confidence 9999865
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-46 Score=310.99 Aligned_cols=283 Identities=18% Similarity=0.258 Sum_probs=236.6
Q ss_pred ccccceeeee-----cC---CceEEEecCCeEEEEEecCCc-----eeeEEeecCCCCCceEEEEcCCCCEEEEEECCCc
Q 019847 15 EDYYSKVIDW-----GR---NNVLAVALGPVLFLWKWENGK-----VKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSK 81 (335)
Q Consensus 15 ~~~~~~~~~~-----~~---~~~~~~~~~~~i~vw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (335)
+...+.+++| ++ ..+++++.|++|++||+.+.+ ......+.+|...|.+++|+|++.++++|+.|++
T Consensus 20 H~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~ 99 (343)
T 2xzm_R 20 HSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKT 99 (343)
T ss_dssp CSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSE
T ss_pred chhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCc
Confidence 5567888988 43 357788899999999997653 2345567899999999999999999999999999
Q ss_pred EEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE--eecCCCCEEEEEeecCC---
Q 019847 82 LQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC--IKAHSGEVCGLKWSNEG--- 156 (335)
Q Consensus 82 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~--- 156 (335)
|++||+++++.+..+.+|...|.+++|+| ++++|++++.|+.|++||+.. ...... ...|...|.+++|+|++
T Consensus 100 v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 177 (343)
T 2xzm_R 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSA 177 (343)
T ss_dssp EEEEETTSSCEEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSC
T ss_pred EEEEECCCCcEEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccc
Confidence 99999999999999999999999999999 999999999999999999973 322221 12688899999999986
Q ss_pred -------CEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC-CCceEE
Q 019847 157 -------NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ-KGTCIH 228 (335)
Q Consensus 157 -------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~~~ 228 (335)
.+|++++.||.|++||.+ ......+.+|...|.+++|+|++.+ +++++ .|+.|++||+. ......
T Consensus 178 ~~~~~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~h~~~v~~~~~s~~g~~-l~sgs--~dg~v~iwd~~~~~~~~~ 250 (343)
T 2xzm_R 178 NKVQPFAPYFASVGWDGRLKVWNTN----FQIRYTFKAHESNVNHLSISPNGKY-IATGG--KDKKLLIWDILNLTYPQR 250 (343)
T ss_dssp SCCCSSCCEEEEEETTSEEEEEETT----TEEEEEEECCSSCEEEEEECTTSSE-EEEEE--TTCEEEEEESSCCSSCSE
T ss_pred cccCCCCCEEEEEcCCCEEEEEcCC----CceeEEEcCccccceEEEECCCCCE-EEEEc--CCCeEEEEECCCCcccce
Confidence 799999999999999943 2445677889999999999999965 55554 89999999994 445556
Q ss_pred EeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceee--ccc-----------CCCCceeEeEEcCCCCE
Q 019847 229 GIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVG--ELQ-----------SSNSRILDLSQSPDGLT 295 (335)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~--~~~-----------~~~~~i~~~~~~~~~~~ 295 (335)
.+.....+.+++|+|++.+++++ .|+.|++||+.+++... .+. +|...|.+++|+|+|++
T Consensus 251 ~~~~~~~v~~v~~sp~~~~la~~-------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 323 (343)
T 2xzm_R 251 EFDAGSTINQIAFNPKLQWVAVG-------TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK 323 (343)
T ss_dssp EEECSSCEEEEEECSSSCEEEEE-------ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCC
T ss_pred eecCCCcEEEEEECCCCCEEEEE-------CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCe
Confidence 66667789999999999877654 48889999998766543 332 67788999999999999
Q ss_pred EEEEeCCCcEEEEecCCC
Q 019847 296 VATAGADETIRFWEAFGP 313 (335)
Q Consensus 296 l~~~~~dg~v~iw~~~~~ 313 (335)
|++|+.||.|++|++..+
T Consensus 324 l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 324 LFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEEETTSEEEEEEEEEE
T ss_pred EEEecCCceEEEEEEEcc
Confidence 999999999999998754
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-47 Score=318.47 Aligned_cols=292 Identities=19% Similarity=0.258 Sum_probs=228.6
Q ss_pred ccccceeeeecCC-ceEE-Eec------CCeEEEEEecCCceee--EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEE
Q 019847 15 EDYYSKVIDWGRN-NVLA-VAL------GPVLFLWKWENGKVKK--LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQL 84 (335)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~-~~~------~~~i~vw~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (335)
++..+++++|+++ .+++ ++. |+.|++|+..++.... .....+|...|.+++|+|+++ +++++.||.|++
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~l 119 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVEL 119 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEE
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEE
Confidence 5677999999995 4444 444 6789999887765322 123346888999999999985 556778999999
Q ss_pred EeCCCceeEee----ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCC-EE
Q 019847 85 WDAETSKLVRN----LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN-LL 159 (335)
Q Consensus 85 w~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l 159 (335)
||+.+++.... ..+|...|.+++|+| ++++|++|+.|+.|++||++++. ....+.+|...|++++|+|++. ++
T Consensus 120 Wd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 120 WEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKA-VLKSYNAHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp C--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTCSSCE
T ss_pred eeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEccCCCcee
Confidence 99998765432 347899999999999 99999999999999999998654 4667889999999999999764 78
Q ss_pred EEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeE
Q 019847 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICG 238 (335)
Q Consensus 160 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~ 238 (335)
++++.||.|++||++++..... .....+...+.+++|+|++..++++++ .|+.|++||+++++++..+.. ...+.+
T Consensus 198 ~s~~~dg~v~~wd~~~~~~~~~-~~~~~~~~~v~~v~~sp~~~~~la~g~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 274 (357)
T 4g56_B 198 LSCGEDGRILLWDTRKPKPATR-IDFCASDTIPTSVTWHPEKDDTFACGD--ETGNVSLVNIKNPDSAQTSAVHSQNITG 274 (357)
T ss_dssp EEEETTSCEEECCTTSSSCBCB-CCCTTCCSCEEEEEECTTSTTEEEEEE--SSSCEEEEESSCGGGCEEECCCSSCEEE
T ss_pred eeeccCCceEEEECCCCceeee-eeeccccccccchhhhhcccceEEEee--cccceeEEECCCCcEeEEEeccceeEEE
Confidence 9999999999999987544322 233457778999999999888888887 899999999999999888875 468999
Q ss_pred EEeCCCCc-eeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcC-CCCEEEEEeCCCcEEEEecCCCCCC
Q 019847 239 LEWNRHHK-EILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSP-DGLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 239 ~~~~~~~~-~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
++|+|++. +++++ +.|+.|++||+++++.+..+ +|.+.|++++|+| ++.+|++++.||.|++|++......
T Consensus 275 l~~sp~~~~~lasg------s~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 275 LAYSYHSSPFLASI------SEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp EEECSSSSCCEEEE------ETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred EEEcCCCCCEEEEE------eCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 99999985 56666 78999999999998887654 7999999999998 7899999999999999999876554
Q ss_pred CCc
Q 019847 317 EDS 319 (335)
Q Consensus 317 ~~~ 319 (335)
...
T Consensus 348 ~~~ 350 (357)
T 4g56_B 348 ENL 350 (357)
T ss_dssp ---
T ss_pred ccc
Confidence 443
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-46 Score=334.55 Aligned_cols=306 Identities=17% Similarity=0.237 Sum_probs=250.7
Q ss_pred cccccceeeeecCC---ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc
Q 019847 14 MEDYYSKVIDWGRN---NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 14 ~~~~~~~~~~~~~~---~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
.+...+.+++|+++ .+++++.|+.|++||..+++. ...+.+|...|.+++|+|++++|++|+.|++|++||+.++
T Consensus 145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~--~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g 222 (611)
T 1nr0_A 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF--KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222 (611)
T ss_dssp CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE--eeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence 34567889999985 377888999999999887765 3456799999999999999999999999999999999999
Q ss_pred eeEeeec-------ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee---------------------------
Q 019847 91 KLVRNLE-------GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV--------------------------- 136 (335)
Q Consensus 91 ~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--------------------------- 136 (335)
+.+..+. +|...|.+++|+| ++++|++++.|++|++||+++++..
T Consensus 223 ~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 301 (611)
T 1nr0_A 223 TKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 301 (611)
T ss_dssp CEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEE
T ss_pred cEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEe
Confidence 9888774 7999999999999 9999999999999999999765432
Q ss_pred ---------------eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccce-------------------
Q 019847 137 ---------------TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL------------------- 182 (335)
Q Consensus 137 ---------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------------------- 182 (335)
...+.+|...|++++|+|++++|++++.|+.|++||+.++......
T Consensus 302 ~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l 381 (611)
T 1nr0_A 302 ANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 381 (611)
T ss_dssp TTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred CCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence 2234579999999999999999999999999999998753211000
Q ss_pred -------------------------------------------------------------eeccCCCCCeeEEEecCCC
Q 019847 183 -------------------------------------------------------------HRFTDHCGGVKALAWSPHQ 201 (335)
Q Consensus 183 -------------------------------------------------------------~~~~~~~~~v~~~~~~~~~ 201 (335)
..+ .|...+.+++|+|++
T Consensus 382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg 460 (611)
T 1nr0_A 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDK 460 (611)
T ss_dssp EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTS
T ss_pred EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCC
Confidence 000 123457889999999
Q ss_pred CcEEEEecCCCCCeEEEEECCCCce--EEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC-Cceeec--
Q 019847 202 VNVLATGGGREDGCIKIWNVQKGTC--IHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN-MTKVGE-- 276 (335)
Q Consensus 202 ~~~~~~~~g~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~-- 276 (335)
+ ++++++ .|+.|++||+.+++. +....+...+.+++|+|++++++++ +.|+.|++||+.+ ++....
T Consensus 461 ~-~lasgs--~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~------s~d~~v~~w~~~~~~~~~~~~~ 531 (611)
T 1nr0_A 461 Q-FVAVGG--QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT------DQSRKVIPYSVANNFELAHTNS 531 (611)
T ss_dssp C-EEEEEE--TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEE------ETTSCEEEEEGGGTTEESCCCC
T ss_pred C-EEEEeC--CCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEE------cCCCCEEEEEcCCCCceeeeee
Confidence 6 555655 899999999987654 3344567789999999999999987 7799999999987 555543
Q ss_pred ccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC--CCcccc-ccccccceec
Q 019847 277 LQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGD--EDSVSH-LAGLVSLKTS 332 (335)
Q Consensus 277 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~--~~~~~~-~~~i~~~~~~ 332 (335)
+..|...|.+++|+||+++|++|+.|+.|++|++..+... ....+| ...|.++.|+
T Consensus 532 ~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs 590 (611)
T 1nr0_A 532 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL 590 (611)
T ss_dssp CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE
T ss_pred eeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEc
Confidence 3459999999999999999999999999999999886533 244577 7788887764
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=302.49 Aligned_cols=282 Identities=24% Similarity=0.444 Sum_probs=243.4
Q ss_pred cccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 14 MEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
.+...+.+++|+++ .+++++.|+.|++|+..+++... .+.+|...|.+++|+|++++|++|+.||.|++||+++++
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 98 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 98 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch--hhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc
Confidence 45667899999984 47777899999999999887644 456899999999999999999999999999999999999
Q ss_pred eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEE
Q 019847 92 LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
.+..+..|...|.++.|+| ++++|++|+.|+.|++||+++++. ...+..|..+|.+++|+|++++|++++.||.|++|
T Consensus 99 ~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 176 (312)
T 4ery_A 99 CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176 (312)
T ss_dssp EEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEE-EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 9999999999999999999 999999999999999999986654 56677899999999999999999999999999999
Q ss_pred EccCCCcccceeec-cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCc----EeEEEeCCCCc
Q 019847 172 ERSKMSSSKSLHRF-TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ----ICGLEWNRHHK 246 (335)
Q Consensus 172 d~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~ 246 (335)
|+++.. .+..+ ..+..++..++|+|++..+++.+ .|+.|++||+++++.+..+..+.. +......+++.
T Consensus 177 d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (312)
T 4ery_A 177 DTASGQ---CLKTLIDDDNPPVSFVKFSPNGKYILAAT---LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 250 (312)
T ss_dssp ETTTCC---EEEEECCSSCCCEEEEEECTTSSEEEEEE---TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSC
T ss_pred ECCCCc---eeeEEeccCCCceEEEEECCCCCEEEEEc---CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCc
Confidence 988643 23332 34667899999999997665544 799999999999999888865432 22233346677
Q ss_pred eeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEe--CCCcEEEEecC
Q 019847 247 EILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAG--ADETIRFWEAF 311 (335)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~v~iw~~~ 311 (335)
+++++ +.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++ .|+.|++|+.+
T Consensus 251 ~l~sg------~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 251 WIVSG------SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEC------CTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEE------CCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 77776 7899999999999999999999999999999999999999987 69999999865
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=319.78 Aligned_cols=267 Identities=19% Similarity=0.340 Sum_probs=240.9
Q ss_pred EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecc
Q 019847 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR 131 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 131 (335)
..+.+|..+|++++|+|++++|++|+.||.|++||+.+++....+.+|...|.+++|+| ++++|++|+.|++|++||+.
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETT
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Confidence 34568999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred cCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCC
Q 019847 132 VSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGR 211 (335)
Q Consensus 132 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 211 (335)
+.. ....+.+|...|.+++|+|++++|++|+.|+.|++||++++ ..+..+.+|...|.++.++|++. ++++++
T Consensus 181 ~~~-~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~g~-~l~s~s-- 253 (410)
T 1vyh_C 181 GFE-CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG---YCVKTFTGHREWVRMVRPNQDGT-LIASCS-- 253 (410)
T ss_dssp SSC-EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSS-EEEEEE--
T ss_pred CCc-eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEeCCCccEEEEEECCCCC-EEEEEc--
Confidence 655 46667899999999999999999999999999999998764 45777889999999999999996 555555
Q ss_pred CCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCC--------------------ceeeeeeeeeeecCCCeEEEEECCC
Q 019847 212 EDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHH--------------------KEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 212 ~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
.|+.|++||++++++...+.. ...+.+++|+|++ .++++| +.|+.|++||+.+
T Consensus 254 ~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg------s~D~~i~iwd~~~ 327 (410)
T 1vyh_C 254 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG------SRDKTIKMWDVST 327 (410)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE------ETTSEEEEEETTT
T ss_pred CCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE------eCCCeEEEEECCC
Confidence 899999999999998888865 4679999999974 345554 8899999999999
Q ss_pred CceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 271 MTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
++++..+.+|...|++++|+|++++|++|+.||.|++||+..++.......|...|.++.++
T Consensus 328 ~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~ 389 (410)
T 1vyh_C 328 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 389 (410)
T ss_dssp TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC
T ss_pred CceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc
Confidence 99999999999999999999999999999999999999999888888788899889888775
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=333.43 Aligned_cols=311 Identities=18% Similarity=0.248 Sum_probs=254.0
Q ss_pred cccccccCCCCcccccceeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCc
Q 019847 3 REARILDAPYLMEDYYSKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSK 81 (335)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (335)
+..+++............+++|+|+ +.++.+.++.|++|++++++.. ..+.+|...|++++|+|+|++||+|+.||+
T Consensus 5 ~~~~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~--~~~~~h~~~v~~~~~spdg~~lasg~~d~~ 82 (611)
T 1nr0_A 5 SQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDT--EIYTEHSHQTTVAKTSPSGYYCASGDVHGN 82 (611)
T ss_dssp EEEEEECCCCCCCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCC--EEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ccccEECCCCCcccCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccC--eEecCCCCceEEEEECCCCcEEEEEeCCCC
Confidence 4445555444445667788999984 5666667889999999877654 356699999999999999999999999999
Q ss_pred EEEEeCCCc--eeEeeecccccceeEeeecCCCCCEEEEeeCC----CcEEEEecccCCeeeEEeecCCCCEEEEEeecC
Q 019847 82 LQLWDAETS--KLVRNLEGHHRRVATSSWNHWNGHILTSGSKD----KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNE 155 (335)
Q Consensus 82 i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 155 (335)
|+|||+.++ .....+..|..+|.+++|+| +++.|++++.+ +.|++||.. . ....+.+|...|.+++|+|+
T Consensus 83 v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~-dg~~l~~~~~~~~~~~~v~~wd~~--~-~~~~l~gh~~~v~~v~f~p~ 158 (611)
T 1nr0_A 83 VRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTG--T-SNGNLTGQARAMNSVDFKPS 158 (611)
T ss_dssp EEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTC--C-BCBCCCCCSSCEEEEEECSS
T ss_pred EEEeECCCCcceeeEeecccCCceEEEEECC-CCCEEEEEECCCCceeEEEEeeCC--C-CcceecCCCCCceEEEECCC
Confidence 999999754 34557788999999999999 89999988865 478888843 3 24457889999999999999
Q ss_pred CC-EEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee---
Q 019847 156 GN-LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID--- 231 (335)
Q Consensus 156 ~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--- 231 (335)
+. .|++++.|++|++||.+. .+....+.+|...|.+++|+|++. ++++++ .|+.|++||+.+++.+..+.
T Consensus 159 ~~~~l~s~s~D~~v~lwd~~~---~~~~~~l~~H~~~V~~v~fspdg~-~las~s--~D~~i~lwd~~~g~~~~~~~~~~ 232 (611)
T 1nr0_A 159 RPFRIISGSDDNTVAIFEGPP---FKFKSTFGEHTKFVHSVRYNPDGS-LFASTG--GDGTIVLYNGVDGTKTGVFEDDS 232 (611)
T ss_dssp SSCEEEEEETTSCEEEEETTT---BEEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTCCEEEECBCTT
T ss_pred CCeEEEEEeCCCeEEEEECCC---CeEeeeeccccCceEEEEECCCCC-EEEEEE--CCCcEEEEECCCCcEeeeecccc
Confidence 86 699999999999999765 455777889999999999999996 555555 89999999999999888873
Q ss_pred -----cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceee-------------------------------
Q 019847 232 -----AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVG------------------------------- 275 (335)
Q Consensus 232 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~------------------------------- 275 (335)
+...+.+++|+|++++++++ +.|+.|++||+.+++.+.
T Consensus 233 ~~~~~h~~~V~~v~~spdg~~l~s~------s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i 306 (611)
T 1nr0_A 233 LKNVAHSGSVFGLTWSPDGTKIASA------SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 306 (611)
T ss_dssp SSSCSSSSCEEEEEECTTSSEEEEE------ETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred ccccccCCCEEEEEECCCCCEEEEE------eCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE
Confidence 45689999999999999887 779999999998765543
Q ss_pred ------------cccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc-ccccccccccee
Q 019847 276 ------------ELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS-VSHLAGLVSLKT 331 (335)
Q Consensus 276 ------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-~~~~~~i~~~~~ 331 (335)
.+.+|...|++++|+|++++|++++.|+.|++||+..+...... ..|...|.++.+
T Consensus 307 ~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~ 375 (611)
T 1nr0_A 307 NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 375 (611)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEE
T ss_pred EEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEE
Confidence 33578899999999999999999999999999999887543332 356666666554
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-45 Score=308.13 Aligned_cols=287 Identities=23% Similarity=0.354 Sum_probs=236.8
Q ss_pred ccccceeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeec----------------CCCCCceEEEEcCCCCEEEEEE
Q 019847 15 EDYYSKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVP----------------GEDDYPTSVSWSHDAKTLAVGY 77 (335)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~~~~ 77 (335)
+...+.+++|+++ .+++++.++.+++|++.+++....+... .+...|.+++|+|++++|++|+
T Consensus 63 h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~ 142 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 142 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence 4567889999984 6777778899999999998865433211 1223489999999999999999
Q ss_pred CCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CC
Q 019847 78 MDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EG 156 (335)
Q Consensus 78 ~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 156 (335)
.||.|++||+++++.+..+.+|...|.+++|+| +++.|++++.|+.|++||++++... ..+ .+...+.+++|+| ++
T Consensus 143 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~-~~~-~~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 143 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCS-LTL-SIEDGVTTVAVSPGDG 219 (393)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE-EEE-ECSSCEEEEEECSTTC
T ss_pred CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeE-EEE-EcCCCcEEEEEECCCC
Confidence 999999999999999999999999999999999 9999999999999999999876543 333 3677899999999 89
Q ss_pred CEEEEEeCCCeEEEEEccCCCcccce----eeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc-------
Q 019847 157 NLLASGGDDNVVRIWERSKMSSSKSL----HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT------- 225 (335)
Q Consensus 157 ~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~------- 225 (335)
++|++++.||.|++||+++......+ ....+|...|.+++|+|++..+ ++++ .|+.|++||+++..
T Consensus 220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l-~s~s--~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV-VSGS--LDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEE-EEEE--TTSEEEEEEC-----------
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEE-EEEe--CCCEEEEEECCCCCCcccccC
Confidence 99999999999999998865332222 1125788999999999999655 5555 89999999997643
Q ss_pred -----eEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcC------CC
Q 019847 226 -----CIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSP------DG 293 (335)
Q Consensus 226 -----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~------~~ 293 (335)
+...+. +...+.+++|+|++.+++++ +.|+.|++||..+++++..+.+|...|.+++|++ ++
T Consensus 297 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg------s~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~ 370 (393)
T 1erj_A 297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSG------SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 370 (393)
T ss_dssp ----CEEEEEECCSSCEEEEEECGGGCEEEEE------ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC
T ss_pred CCCCcceEEEecccCcEEEEEECCCCCEEEEE------eCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCC
Confidence 333443 34579999999999999887 7899999999999999999999999999999886 68
Q ss_pred CEEEEEeCCCcEEEEecCCC
Q 019847 294 LTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 294 ~~l~~~~~dg~v~iw~~~~~ 313 (335)
++|++|+.||.|++|++...
T Consensus 371 ~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 371 NVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEEEETTSEEEEEEEEEC
T ss_pred CEEEEECCCCcEEECccccc
Confidence 89999999999999998754
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=300.58 Aligned_cols=287 Identities=22% Similarity=0.373 Sum_probs=248.6
Q ss_pred cccccceeeeecCC---ceEEEecCCeEEEEEecCCce---eeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeC
Q 019847 14 MEDYYSKVIDWGRN---NVLAVALGPVLFLWKWENGKV---KKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDA 87 (335)
Q Consensus 14 ~~~~~~~~~~~~~~---~~~~~~~~~~i~vw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 87 (335)
.+...|++++|+|+ .+++++.|++|+|||+.+.+. .+...+.+|...|.+++|+|++++|++++.|+.|++|+.
T Consensus 36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~ 115 (340)
T 4aow_A 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115 (340)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEee
Confidence 36678999999973 366788999999999987543 345567899999999999999999999999999999999
Q ss_pred CCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecC--CCEEEEEeCC
Q 019847 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNE--GNLLASGGDD 165 (335)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d 165 (335)
...........+...+....+++ .++.|++++.|+.+++||+...........+|...+..++|+++ ..++++++.|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d 194 (340)
T 4aow_A 116 TTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 194 (340)
T ss_dssp TTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred cccceeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCC
Confidence 99998888888889999999999 89999999999999999998766666667789999999999885 4578999999
Q ss_pred CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCC
Q 019847 166 NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHH 245 (335)
Q Consensus 166 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (335)
+.|++||++. .+.+..+.+|.++|.+++|+|++. ++++++ .|+.|++||+++.+.+..+..+..+.++.|+|++
T Consensus 195 ~~i~i~d~~~---~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 268 (340)
T 4aow_A 195 KLVKVWNLAN---CKLKTNHIGHTGYLNTVTVSPDGS-LCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNR 268 (340)
T ss_dssp SCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTCEEEEEETTTTEEEEEEECSSCEEEEEECSSS
T ss_pred CEEEEEECCC---CceeeEecCCCCcEEEEEECCCCC-EEEEEe--CCCeEEEEEeccCceeeeecCCceEEeeecCCCC
Confidence 9999999876 455777888999999999999996 455555 8999999999999999999999999999999998
Q ss_pred ceeeeeeeeeeecCCCeEEEEECCCCceeecc---------cCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 246 KEILSGHGFSASGDGNKLCLWKYPNMTKVGEL---------QSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
..++. +.|+.|++||++++..+..+ ..|...|++++|+|++++|++|+.||.|++||+.++.
T Consensus 269 ~~~~~-------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 269 YWLCA-------ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SEEEE-------EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ceeec-------cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 76654 35999999999987766554 3678899999999999999999999999999998865
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-45 Score=300.97 Aligned_cols=269 Identities=18% Similarity=0.327 Sum_probs=238.7
Q ss_pred eEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEe
Q 019847 50 KLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHD 129 (335)
Q Consensus 50 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 129 (335)
....+.+|...|++++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++|+| ++++|++|+.|+.+++|+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYN 125 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECT-TSSEEEEEETTCEEEEEE
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEE
Confidence 4556789999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cccCC---eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEE
Q 019847 130 VRVSN---NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLA 206 (335)
Q Consensus 130 ~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 206 (335)
+.+.. .....+.+|.+.|.++.|++++. +++++.|+.|++||+++. ..+..+.+|.+.|.+++|+|++. +++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~~~-~l~ 200 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG---QQTTTFTGHTGDVMSLSLAPDTR-LFV 200 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSS-EEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC---cEEEEEcCCCCceEEEEECCCCC-EEE
Confidence 98654 34566788999999999998865 889999999999998764 45777889999999999999986 555
Q ss_pred EecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccC--CCCc
Q 019847 207 TGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS--SNSR 283 (335)
Q Consensus 207 ~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~ 283 (335)
+++ .|+.|++||+++++++..+.. ...+.+++|+|++.+++++ +.|+.|++||+++++.+..+.. +...
T Consensus 201 sg~--~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~------s~d~~v~iwd~~~~~~~~~~~~~~~~~~ 272 (340)
T 1got_B 201 SGA--CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG------SDDATCRLFDLRADQELMTYSHDNIICG 272 (340)
T ss_dssp EEE--TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEE------ETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred EEe--CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEE------cCCCcEEEEECCCCcEEEEEccCCcccc
Confidence 555 899999999999999888875 4589999999999999887 7899999999999888766643 3357
Q ss_pred eeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 284 ILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 284 i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
|++++|+|++++|++|+.||.|++||+...+......+|...|.++.++
T Consensus 273 v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s 321 (340)
T 1got_B 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred eEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc
Confidence 9999999999999999999999999999888777778899999888775
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-45 Score=300.38 Aligned_cols=266 Identities=21% Similarity=0.354 Sum_probs=235.0
Q ss_pred eecCCCCCceEEEEcCC----CCEEEEEECCCcEEEEeCCCcee--EeeecccccceeEeeecCCCCCEEEEeeCCCcEE
Q 019847 53 QVPGEDDYPTSVSWSHD----AKTLAVGYMDSKLQLWDAETSKL--VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSII 126 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 126 (335)
.+.+|.+.|.+++|+|+ +++|++|+.|++|++|++.+++. ...+.+|...|.+++|++ ++.++++++.|+.|+
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~-~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIR 105 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC-CCCEEEEEeCCCcEE
Confidence 45689999999999984 67999999999999999987654 456889999999999999 899999999999999
Q ss_pred EEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEE
Q 019847 127 NHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLA 206 (335)
Q Consensus 127 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 206 (335)
+||+++++. ...+..|...+.+++|+|++++|++++.||.|++||++.. +....+..+...+.+++|+|+++.+ +
T Consensus 106 lWd~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~---~~~~~~~~~~~~v~~~~~spdg~~l-a 180 (321)
T 3ow8_A 106 LWDLENGKQ-IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG---KKEYSLDTRGKFILSIAYSPDGKYL-A 180 (321)
T ss_dssp EEETTTTEE-EEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC---SEEEEEECSSSCEEEEEECTTSSEE-E
T ss_pred EEECCCCCE-EEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC---ceeEEecCCCceEEEEEECCCCCEE-E
Confidence 999986654 5567788889999999999999999999999999998764 3456667788899999999999754 4
Q ss_pred EecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCcee
Q 019847 207 TGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRIL 285 (335)
Q Consensus 207 ~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~ 285 (335)
+++ .|+.|++||+++++.+..++. ..++.+++|+|++++++++ +.|+.|++||+++++....+.+|...|.
T Consensus 181 sg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~------s~dg~i~iwd~~~~~~~~~~~~h~~~v~ 252 (321)
T 3ow8_A 181 SGA--IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTA------SDDGYIKIYDVQHANLAGTLSGHASWVL 252 (321)
T ss_dssp EEE--TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEE------CTTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred EEc--CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEE------cCCCeEEEEECCCcceeEEEcCCCCceE
Confidence 554 799999999999999988875 4589999999999999887 7899999999999999999999999999
Q ss_pred EeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 286 DLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 286 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
+++|+|++++|++++.||.|++||+..++....+.+|...|.++.++
T Consensus 253 ~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s 299 (321)
T 3ow8_A 253 NVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN 299 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEEC
Confidence 99999999999999999999999999988777778898888888775
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-45 Score=309.61 Aligned_cols=287 Identities=16% Similarity=0.204 Sum_probs=246.8
Q ss_pred CcccccceeeeecCCceEEEecCCeEEEEEecCCc----eeeEEeecCCCCCceEEEEcCC----C---CEEEEEECCCc
Q 019847 13 LMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGK----VKKLLQVPGEDDYPTSVSWSHD----A---KTLAVGYMDSK 81 (335)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~----~~~~~~~~~~~~~v~~~~~~~~----~---~~l~~~~~dg~ 81 (335)
..+...+.+++|+++.+++++.|+.|++|++++++ ......+.+|...|.+++|+|+ + ++|++++.||.
T Consensus 13 ~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~ 92 (397)
T 1sq9_A 13 KAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGD 92 (397)
T ss_dssp SCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSC
T ss_pred hhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCC
Confidence 34667899999999888889999999999999887 2234455689999999999999 9 99999999999
Q ss_pred EEEEeCCCcee-----Eeeeccc-----ccceeEeeec----CCCCCE-EEEeeCCCcEEEEeccc------CCeee---
Q 019847 82 LQLWDAETSKL-----VRNLEGH-----HRRVATSSWN----HWNGHI-LTSGSKDKSIINHDVRV------SNNVT--- 137 (335)
Q Consensus 82 i~iw~~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~~-l~~~~~dg~i~~~d~~~------~~~~~--- 137 (335)
|++||+.+++. ...+..| ...|.+++|+ | +++. |++++.||.|++||++. ...+.
T Consensus 93 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 171 (397)
T 1sq9_A 93 LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 171 (397)
T ss_dssp EEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred EEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeeccC
Confidence 99999998886 8888888 5999999999 8 8888 99999999999999987 44332
Q ss_pred -EEe-------ecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccC---C---CCCeeEEEecCCCCc
Q 019847 138 -SCI-------KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD---H---CGGVKALAWSPHQVN 203 (335)
Q Consensus 138 -~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~ 203 (335)
..+ ..|...|.+++|+|++ +|++++.||.|++||++.. +.+..+.. | ...|.+++|+|++..
T Consensus 172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~ 247 (397)
T 1sq9_A 172 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL---RPLYNFESQHSMINNSNSIRSVKFSPQGSL 247 (397)
T ss_dssp EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT---EEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC---ceeEEEeccccccccCCccceEEECCCCCE
Confidence 034 4588999999999999 9999999999999998864 45666666 8 899999999999865
Q ss_pred EEEEecCCCC---CeEEEEECCCCceEEEeec--------------CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEE
Q 019847 204 VLATGGGRED---GCIKIWNVQKGTCIHGIDA--------------KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLW 266 (335)
Q Consensus 204 ~~~~~~g~~d---~~i~i~d~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 266 (335)
+++ ++ .| +.|++||+++++.+..+.. ...+.+++|+|++++++++ +.|+.|++|
T Consensus 248 l~~-~~--~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------~~dg~i~iw 318 (397)
T 1sq9_A 248 LAI-AH--DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA------GWDGKLRFW 318 (397)
T ss_dssp EEE-EE--EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE------ETTSEEEEE
T ss_pred EEE-Ee--cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEE------eCCCeEEEE
Confidence 554 44 68 9999999999999888874 5689999999999999887 679999999
Q ss_pred ECCCCceeeccc------CC---------------CCceeEeEEcCCC----------CEEEEEeCCCcEEEEecCCC
Q 019847 267 KYPNMTKVGELQ------SS---------------NSRILDLSQSPDG----------LTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 267 d~~~~~~~~~~~------~~---------------~~~i~~~~~~~~~----------~~l~~~~~dg~v~iw~~~~~ 313 (335)
|+.+++.+..+. .| ...|++++|+|++ ++|++++.||.|++|++.++
T Consensus 319 d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 319 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 999999999998 78 8999999999998 79999999999999999875
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=325.85 Aligned_cols=283 Identities=21% Similarity=0.345 Sum_probs=241.6
Q ss_pred cccccceeeeecCC---ceEEEecCCeEEEEEecCCce---eeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeC
Q 019847 14 MEDYYSKVIDWGRN---NVLAVALGPVLFLWKWENGKV---KKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDA 87 (335)
Q Consensus 14 ~~~~~~~~~~~~~~---~~~~~~~~~~i~vw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 87 (335)
.+...+++++|+++ .+++++.|+.|++|++.+... .....+.+|...|.+++|+|++++|++|+.||.|++||+
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~ 459 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL 459 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 35667899999863 477788999999999976432 234566799999999999999999999999999999999
Q ss_pred CCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE---eecCCCCEEEEEeecCC--CEEEEE
Q 019847 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC---IKAHSGEVCGLKWSNEG--NLLASG 162 (335)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~~~~i~~~~~~~~~--~~l~~~ 162 (335)
.+++....+.+|...|.+++|+| +++.|++++.|++|++||...... ... ..+|...|.+++|+|++ ..++++
T Consensus 460 ~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 537 (694)
T 3dm0_A 460 AAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSA 537 (694)
T ss_dssp TTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEE
T ss_pred CCCcceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEE
Confidence 99999999999999999999999 999999999999999999864322 222 24688899999999976 689999
Q ss_pred eCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeC
Q 019847 163 GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWN 242 (335)
Q Consensus 163 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 242 (335)
+.|+.|++||++.. +....+.+|.+.|.+++|+|++. ++++++ .|+.|++||+++++.+..+..+..+.+++|+
T Consensus 538 s~d~~v~vwd~~~~---~~~~~~~~h~~~v~~v~~spdg~-~l~sg~--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s 611 (694)
T 3dm0_A 538 SWDKTVKVWNLSNC---KLRSTLAGHTGYVSTVAVSPDGS-LCASGG--KDGVVLLWDLAEGKKLYSLEANSVIHALCFS 611 (694)
T ss_dssp ETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSBCEEEETTTTEEEECCBCSSCEEEEEEC
T ss_pred eCCCeEEEEECCCC---cEEEEEcCCCCCEEEEEEeCCCC-EEEEEe--CCCeEEEEECCCCceEEEecCCCcEEEEEEc
Confidence 99999999998763 45677888999999999999996 555555 8999999999999999998888899999999
Q ss_pred CCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC-------------------CceeEeEEcCCCCEEEEEeCCC
Q 019847 243 RHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN-------------------SRILDLSQSPDGLTVATAGADE 303 (335)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-------------------~~i~~~~~~~~~~~l~~~~~dg 303 (335)
|++..++++ .++.|++||+.+++.+..+..+. ..+++++|+|+|++|++|+.||
T Consensus 612 p~~~~l~~~-------~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 612 PNRYWLCAA-------TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp SSSSEEEEE-------ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred CCCcEEEEE-------cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 999888765 36779999999988877654321 1378899999999999999999
Q ss_pred cEEEEecC
Q 019847 304 TIRFWEAF 311 (335)
Q Consensus 304 ~v~iw~~~ 311 (335)
.|++|++.
T Consensus 685 ~i~iW~i~ 692 (694)
T 3dm0_A 685 VIRVWGIG 692 (694)
T ss_dssp EEEEEEC-
T ss_pred eEEEEecc
Confidence 99999985
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-45 Score=312.52 Aligned_cols=294 Identities=16% Similarity=0.213 Sum_probs=235.8
Q ss_pred ccccceeeeecC--C-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCCc
Q 019847 15 EDYYSKVIDWGR--N-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 15 ~~~~~~~~~~~~--~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
++..++|++|+| + .+++++.||.|+|||+.+++......+.+|...|++++|+| ++++|++|+.||+|++||++++
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~ 197 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN 197 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence 455699999997 2 35667789999999999888777777889999999999998 7899999999999999999876
Q ss_pred eeEeeec--ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCC-EEEEEeCCCe
Q 019847 91 KLVRNLE--GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN-LLASGGDDNV 167 (335)
Q Consensus 91 ~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~ 167 (335)
....... .+...+.+++|+| ++.+|++|+.||.|++||++. + ....+.+|...|.+++|+|++. +|++++.|+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~-~-~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~ 274 (435)
T 4e54_B 198 ILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDG-K-ELWNLRMHKKKVTHVALNPCCDWFLATASVDQT 274 (435)
T ss_dssp EEEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSS-C-BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB
T ss_pred ceeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCc-c-eeEEEecccceEEeeeecCCCceEEEEecCcce
Confidence 5443333 2345678999999 999999999999999999863 3 3455778999999999999765 7889999999
Q ss_pred EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC-------cEeEEE
Q 019847 168 VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA-------QICGLE 240 (335)
Q Consensus 168 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-------~~~~~~ 240 (335)
|++||++.......+....+|..+|++++|+|++..+++ ++ .|+.|++||+++++....+..+. ......
T Consensus 275 v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s-~~--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (435)
T 4e54_B 275 VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT-TD--QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAA 351 (435)
T ss_dssp CCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEE-EE--SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCE
T ss_pred eeEEecccccccceEEEeeeccccccceeECCCCCeeEE-Ec--CCCEEEEEECCCCccceEEecccccccccceeEEEE
Confidence 999999886655555566789999999999999975555 44 79999999999988776664321 244567
Q ss_pred eCCCCceeeeeee------eeeecCCCeEEEEECCCCceeeccc-CCCCceeEe-EEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 241 WNRHHKEILSGHG------FSASGDGNKLCLWKYPNMTKVGELQ-SSNSRILDL-SQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 241 ~~~~~~~~~~~~~------~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~-~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
|+|++..++++.. +..+.+++.|++||..+++.+..+. +|...|.++ +|+|+|++|++|+ |+.|+||+++.
T Consensus 352 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 352 WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 7888877776532 2233456789999999999988764 677888887 6999999999876 78999999987
Q ss_pred CCC
Q 019847 313 PSG 315 (335)
Q Consensus 313 ~~~ 315 (335)
++.
T Consensus 431 gk~ 433 (435)
T 4e54_B 431 ART 433 (435)
T ss_dssp ---
T ss_pred Cee
Confidence 754
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=295.39 Aligned_cols=289 Identities=15% Similarity=0.203 Sum_probs=253.5
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
+...+.+++|+++ .+++++.|+.|++||+.+++.. ..+.+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 108 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL--GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC 108 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEE--EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhh--hhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 5667899999984 4666778999999999988764 45668999999999999999999999999999999999999
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCC-----CcEEEEecccCCe----------eeEEeecCCC--CEEEEEeecC
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKD-----KSIINHDVRVSNN----------VTSCIKAHSG--EVCGLKWSNE 155 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~----------~~~~~~~~~~--~i~~~~~~~~ 155 (335)
+..+. +...+.+++|+| ++..+++++.+ +.|++||++.... ....+..|.. .+.+++|+|+
T Consensus 109 ~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (369)
T 3zwl_B 109 VATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK 186 (369)
T ss_dssp EEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGG
T ss_pred EEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCC
Confidence 98888 889999999999 99999999999 9999999986542 2334455666 8999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCc
Q 019847 156 GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ 235 (335)
Q Consensus 156 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~ 235 (335)
+++|++++.||.|++||++.. ...+..+..|...|.+++|+|++..+++. + .|+.|++||+++++.+..+.....
T Consensus 187 ~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~--~d~~i~v~d~~~~~~~~~~~~~~~ 261 (369)
T 3zwl_B 187 GKYIIAGHKDGKISKYDVSNN--YEYVDSIDLHEKSISDMQFSPDLTYFITS-S--RDTNSFLVDVSTLQVLKKYETDCP 261 (369)
T ss_dssp GCEEEEEETTSEEEEEETTTT--TEEEEEEECCSSCEEEEEECTTSSEEEEE-E--TTSEEEEEETTTCCEEEEEECSSC
T ss_pred CCEEEEEcCCCEEEEEECCCC--cEeEEEEecCCCceeEEEECCCCCEEEEe-c--CCceEEEEECCCCceeeeecCCCC
Confidence 999999999999999998763 34567777899999999999999755554 4 799999999999999999999999
Q ss_pred EeEEEeCCCCceeeeeeeeeeecCCC--------------eEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeC
Q 019847 236 ICGLEWNRHHKEILSGHGFSASGDGN--------------KLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA 301 (335)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 301 (335)
+..++|+|++++++++ +.++ .+++||..+++.+..+.+|...|++++|+|++++|++++.
T Consensus 262 ~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 335 (369)
T 3zwl_B 262 LNTAVITPLKEFIILG------GGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE 335 (369)
T ss_dssp EEEEEECSSSSEEEEE------ECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred ceeEEecCCCceEEEe------ecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcC
Confidence 9999999999999987 3344 8999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCCCCC
Q 019847 302 DETIRFWEAFGPSGDED 318 (335)
Q Consensus 302 dg~v~iw~~~~~~~~~~ 318 (335)
||.|++|++.......+
T Consensus 336 dg~v~iw~~~~~~~~~~ 352 (369)
T 3zwl_B 336 DGFIRLHHFEKSYFDFK 352 (369)
T ss_dssp TSEEEEEEECHHHHTCC
T ss_pred CCeEEEEECccccchhH
Confidence 99999999987654433
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-45 Score=312.64 Aligned_cols=290 Identities=19% Similarity=0.355 Sum_probs=246.3
Q ss_pred ccceeeeecCC-c-eEEE-----------ecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEE
Q 019847 17 YYSKVIDWGRN-N-VLAV-----------ALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQ 83 (335)
Q Consensus 17 ~~~~~~~~~~~-~-~~~~-----------~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (335)
..+.+++|+++ . ++++ +.|+.|++||+.+++..+......|...|.+++|+|++++|++|+.||.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 46778999985 3 5554 478899999999876432333346889999999999999999999999999
Q ss_pred EEeCCC----ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC------eee--EEeecCCCCEEEEE
Q 019847 84 LWDAET----SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN------NVT--SCIKAHSGEVCGLK 151 (335)
Q Consensus 84 iw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------~~~--~~~~~~~~~i~~~~ 151 (335)
+||+.+ .+.+..+..|...|.+++|+|.++++|++++.||.|++||+++.. ... .....|...|.+++
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence 999987 457888899999999999999438999999999999999998765 222 22457899999999
Q ss_pred eecC-CCEEEEEeCCCeEEEEEccCCCcccceeeccCC------CCCeeEEEecCCCCcEEEEecCCCCC---eEEEEEC
Q 019847 152 WSNE-GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDH------CGGVKALAWSPHQVNVLATGGGREDG---CIKIWNV 221 (335)
Q Consensus 152 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~g~~d~---~i~i~d~ 221 (335)
|+|+ +.+|++++.||.|++||++... .+..+..+ ...+.+++|+|++..++++++ .|+ .|++||+
T Consensus 173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 173 WNQSLAHVFASAGSSNFASIWDLKAKK---EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT--GSDNDPSILIWDL 247 (416)
T ss_dssp ECSSCTTEEEEESSSSCEEEEETTTTE---EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE--CCSSSCCCCEEET
T ss_pred eCCCCCcEEEEEcCCCCEEEEECCCCC---cceEEeccccccccCCceEEEEECCCCCCEEEEEE--CCCCCceEEEEeC
Confidence 9998 7899999999999999988743 34444444 788999999999877888876 787 9999999
Q ss_pred CCC-ceEEEee--cCCcEeEEEeCC-CCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCC-CEE
Q 019847 222 QKG-TCIHGID--AKAQICGLEWNR-HHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDG-LTV 296 (335)
Q Consensus 222 ~~~-~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l 296 (335)
+++ +++..+. +...+.+++|+| ++.+++++ +.|+.|++||+.+++++..+..|...|++++|+|++ .+|
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~------~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l 321 (416)
T 2pm9_A 248 RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSS------GRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLF 321 (416)
T ss_dssp TSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEE------ESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEE
T ss_pred CCCCCCcEEeecCccCceeEEEeCCCCCCeEEEE------eCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEE
Confidence 986 5666665 567899999999 88888887 679999999999999999999999999999999998 899
Q ss_pred EEEeCCCcEEEEecCCCCCCC
Q 019847 297 ATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 297 ~~~~~dg~v~iw~~~~~~~~~ 317 (335)
++++.||.|++|++.......
T Consensus 322 ~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 322 ACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp EECCSSSEEEEEESCCCCCSS
T ss_pred EEEecCCcEEEEEccCCCCCc
Confidence 999999999999999876544
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=299.36 Aligned_cols=283 Identities=15% Similarity=0.190 Sum_probs=231.2
Q ss_pred cccccceeeeecCC---ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCC
Q 019847 14 MEDYYSKVIDWGRN---NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAET 89 (335)
Q Consensus 14 ~~~~~~~~~~~~~~---~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~ 89 (335)
.+...+.+++|+++ .+++++.|+.|++||+.+++....+...+|...|.+++|+| ++++|++++.||.|++||+++
T Consensus 71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (383)
T 3ei3_B 71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG 150 (383)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS
T ss_pred CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC
Confidence 34567899999985 36677789999999999998877777678999999999999 789999999999999999986
Q ss_pred ceeEeeecc---cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCC-EEEEEeCC
Q 019847 90 SKLVRNLEG---HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN-LLASGGDD 165 (335)
Q Consensus 90 ~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d 165 (335)
+.+..+.. +...|.+++|+| ++++|++++.|+.|++||++ ++ ....+..|...|.+++|+|+++ +|++++.|
T Consensus 151 -~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 226 (383)
T 3ei3_B 151 -SVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD-GH-EIFKEKLHKAKVTHAEFNPRCDWLMATSSVD 226 (383)
T ss_dssp -CEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETT-SC-EEEEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred -CceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECC-CC-EEEEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence 44555543 347899999999 99999999999999999994 33 4666788999999999999998 99999999
Q ss_pred CeEEEEEccCCCcccceeeccCCCCCeeEEEecC-CCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-----------
Q 019847 166 NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP-HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK----------- 233 (335)
Q Consensus 166 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~----------- 233 (335)
+.|++||++............+|...|.+++|+| ++..+ ++++ .|+.|++||+++++....+..+
T Consensus 227 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l-~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 303 (383)
T 3ei3_B 227 ATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKL-LTTD--QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPI 303 (383)
T ss_dssp SEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEE-EEEE--SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCC
T ss_pred CEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEE-EEEc--CCCcEEEEECCCCccccccccccccccccccce
Confidence 9999999987543222333336999999999999 88655 4554 7999999999988776655422
Q ss_pred -------CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccC--CCCceeEeEEcCCCCEEEEEeCCCc
Q 019847 234 -------AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS--SNSRILDLSQSPDGLTVATAGADET 304 (335)
Q Consensus 234 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~ 304 (335)
..+..++++|++++ + ++.|+.|++||+.+++.+..+.+ |...+..++|+|++++|++++ ||.
T Consensus 304 ~~~~~p~~~~~~~~~s~dg~~--s------~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 304 KATWHPMYDLIVAGRYPDDQL--L------LNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN 374 (383)
T ss_dssp CCEECSSSSEEEEECBCCTTT--C------TTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred EEeccCCCCceEEEecCCccc--c------cCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence 22333555555554 3 37899999999999999999886 456777889999999999997 999
Q ss_pred EEEEecCC
Q 019847 305 IRFWEAFG 312 (335)
Q Consensus 305 v~iw~~~~ 312 (335)
|++||+++
T Consensus 375 i~iw~~~~ 382 (383)
T 3ei3_B 375 ILIWNRED 382 (383)
T ss_dssp EEEEECC-
T ss_pred EEEEecCC
Confidence 99999875
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=294.42 Aligned_cols=271 Identities=16% Similarity=0.300 Sum_probs=238.2
Q ss_pred eEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEe
Q 019847 50 KLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHD 129 (335)
Q Consensus 50 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 129 (335)
....+.+|...|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+| ++..|++|+.|+.+++|+
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEEE
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEEE
Confidence 3456779999999999999999999999999999999999999999988999999999999 999999999999999999
Q ss_pred cccCC-----eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCC-Cc
Q 019847 130 VRVSN-----NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQ-VN 203 (335)
Q Consensus 130 ~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 203 (335)
+.... .....+..|...|.+++|+|++..|++++.|++|++||++++ +.+..+.+|...|.+++|+|+. ..
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG---QLLQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECCCSSCC
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC---eEEEEEcCCCCCeEEEEEEeCCCCC
Confidence 86432 234556789999999999999999999999999999998764 4577888999999999998853 25
Q ss_pred EEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC--
Q 019847 204 VLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS-- 280 (335)
Q Consensus 204 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-- 280 (335)
++++++ .|+.|++||+++++++..+.. ...+.+++|+|++..++++ +.|+.|++||+++.+.+..+..+
T Consensus 212 ~l~sgs--~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~------s~D~~v~lwd~~~~~~~~~~~~~~~ 283 (354)
T 2pbi_B 212 TFVSGG--CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASG------SDDATCRLYDLRADREVAIYSKESI 283 (354)
T ss_dssp EEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE------ETTSCEEEEETTTTEEEEEECCTTC
T ss_pred EEEEEe--CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEE------eCCCeEEEEECCCCcEEEEEcCCCc
Confidence 666766 899999999999999988875 5689999999999999887 78999999999998877666543
Q ss_pred CCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 281 NSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 281 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
...+.+++|+|++++|++|+.|+.|++||+..++......+|...|.++.++
T Consensus 284 ~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s 335 (354)
T 2pbi_B 284 IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS 335 (354)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC
T ss_pred ccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC
Confidence 3468999999999999999999999999998887777777899999888875
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=289.60 Aligned_cols=270 Identities=21% Similarity=0.371 Sum_probs=236.8
Q ss_pred eeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEE
Q 019847 49 KKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINH 128 (335)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~ 128 (335)
.....+.+|...|++++|+|++++|++|+.||.|++|++.+++....+..|...|.+++|+| ++++|++++.|+.|++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEEE
Confidence 34567789999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEe
Q 019847 129 DVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 129 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
|+++++. ...+.+|...|.+++|+|++++|++++.|+.|++||+++. +.+..+..|..+|.+++|+|++..+ +++
T Consensus 93 d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l-~~~ 167 (312)
T 4ery_A 93 DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLI-VSS 167 (312)
T ss_dssp ETTTCCE-EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEE-EEE
T ss_pred ECCCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---EEEEEecCCCCcEEEEEEcCCCCEE-EEE
Confidence 9987654 5667889999999999999999999999999999998764 4567778899999999999998654 555
Q ss_pred cCCCCCeEEEEECCCCceEEEeec--CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeE
Q 019847 209 GGREDGCIKIWNVQKGTCIHGIDA--KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILD 286 (335)
Q Consensus 209 ~g~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 286 (335)
+ .|+.|++||+++++.+..+.. ..++..++|+|++++++++ +.|+.|++||+.+++.+..+.+|......
T Consensus 168 ~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 239 (312)
T 4ery_A 168 S--YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA------TLDNTLKLWDYSKGKCLKTYTGHKNEKYC 239 (312)
T ss_dssp E--TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEE------ETTTEEEEEETTTTEEEEEECSSCCSSSC
T ss_pred e--CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEE------cCCCeEEEEECCCCcEEEEEEecCCceEE
Confidence 4 799999999999998877643 4578999999999999887 67999999999999999999888765433
Q ss_pred e--EE-cCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 287 L--SQ-SPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 287 ~--~~-~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
+ .+ .+++.+|++|+.||.|++||+..++......+|.+.|.++.+.
T Consensus 240 ~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 288 (312)
T 4ery_A 240 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH 288 (312)
T ss_dssp CCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred EEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeec
Confidence 2 33 4678899999999999999999988777778888888777663
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=293.96 Aligned_cols=247 Identities=16% Similarity=0.252 Sum_probs=209.0
Q ss_pred cccceeeeecCC-ceEEEecCCeEEEEEecCCceeeEE--eecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 16 DYYSKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLL--QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
+..+.+++|+++ .+++++.||.|+|||+++++..... ...+|...|++++|+|++++|++|+.||.|++||+++++.
T Consensus 82 ~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~ 161 (344)
T 4gqb_B 82 EAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV 161 (344)
T ss_dssp SSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 346889999985 6778889999999999998765443 3468999999999999999999999999999999999999
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE-eecCCCCEEEEEeec-CCCEEEEEeCCCeEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC-IKAHSGEVCGLKWSN-EGNLLASGGDDNVVRI 170 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i 170 (335)
+..+.+|...|.+++|++.+..+|++++.|+.|++||+++++..... ...+...+.+++|+| ++++|++|+.||.|++
T Consensus 162 ~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~ 241 (344)
T 4gqb_B 162 LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSL 241 (344)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEE
Confidence 99999999999999999955578999999999999999977764433 234566799999999 5678999999999999
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceee-
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEIL- 249 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 249 (335)
||+++. +.+..+.+|...|++++|+|++..++++++ .|++|++||+++++++....+...|.+++|+|+++.++
T Consensus 242 wd~~~~---~~~~~~~~h~~~v~~v~fsp~g~~~lasgs--~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~lla 316 (344)
T 4gqb_B 242 VDTKST---SCVLSSAVHSQCVTGLVFSPHSVPFLASLS--EDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLT 316 (344)
T ss_dssp EESCC-----CCEEEECCSSCEEEEEECSSSSCCEEEEE--TTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEE
T ss_pred EECCCC---cEEEEEcCCCCCEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEE
Confidence 998864 457778899999999999999987888877 89999999999998876666677999999999998654
Q ss_pred eeeeeeeecCCCeEEEEECCCCce
Q 019847 250 SGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 250 ~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
++ +.|+.|++|++.+...
T Consensus 317 s~------s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 317 TV------GWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EE------ETTSCEEEEECCC---
T ss_pred EE------cCCCeEEEEECCCCCC
Confidence 44 7799999999976543
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=287.78 Aligned_cols=282 Identities=20% Similarity=0.252 Sum_probs=240.7
Q ss_pred cccccceeeeecCC-ceEEEecCCeEEEEEecCCcee---eEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 019847 14 MEDYYSKVIDWGRN-NVLAVALGPVLFLWKWENGKVK---KLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET 89 (335)
Q Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 89 (335)
.+...+.+++|+++ .+++++.|+.|++||+++++.. ......+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 128 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred cCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence 35667889999984 5666666999999999876532 2333347899999999999999999999999999999998
Q ss_pred ce--eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCe
Q 019847 90 SK--LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNV 167 (335)
Q Consensus 90 ~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 167 (335)
++ ....+..|...+.+++|+| +++++++++.||.|++||+++.+ ....+..|...+.+++|+|++++|++++.||.
T Consensus 129 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 206 (337)
T 1gxr_A 129 PTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206 (337)
T ss_dssp C--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCc-eeeeeecccCceEEEEECCCCCEEEEEecCCc
Confidence 87 5667788999999999999 99999999999999999998654 46667789999999999999999999999999
Q ss_pred EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCce
Q 019847 168 VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKE 247 (335)
Q Consensus 168 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (335)
|++||++... .+..+ .+...+.+++|+|++..+++ ++ .++.|++||+++++......+...+.+++|+|++++
T Consensus 207 i~~~d~~~~~---~~~~~-~~~~~v~~~~~s~~~~~l~~-~~--~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 207 VRSWDLREGR---QLQQH-DFTSQIFSLGYCPTGEWLAV-GM--ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp EEEEETTTTE---EEEEE-ECSSCEEEEEECTTSSEEEE-EE--TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSE
T ss_pred EEEEECCCCc---eEeee-cCCCceEEEEECCCCCEEEE-Ec--CCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCE
Confidence 9999988643 33333 36788999999999975555 44 799999999999887766667789999999999999
Q ss_pred eeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 248 ILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 248 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
++++ +.|+.|++||+.+++.+... .|...+.+++|+|++++|++++.||.|++|++.
T Consensus 280 l~~~------~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 280 FVST------GKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEE------ETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred EEEe------cCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 9887 67999999999999887543 577889999999999999999999999999974
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=302.47 Aligned_cols=291 Identities=16% Similarity=0.196 Sum_probs=216.9
Q ss_pred eeecCC-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC------CCcEEEEeCCCceeEe
Q 019847 22 IDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM------DSKLQLWDAETSKLVR 94 (335)
Q Consensus 22 ~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~ 94 (335)
++...+ .++....+.....|++.... ...|...|++++|+|||++||+|+. |+.|++|+..++....
T Consensus 11 ~d~g~~~~~~~~~g~~~~~~w~~p~~~------p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 11 VDLGTENLYFQSNGSSKGSAWGRPVTA------PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred CCCCccceEEecCCCccccccCCCCCC------cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 444443 35555567788999875433 2469999999999999999999997 7889999988765433
Q ss_pred ----eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee---EEeecCCCCEEEEEeecCCCEEEEEeCCCe
Q 019847 95 ----NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT---SCIKAHSGEVCGLKWSNEGNLLASGGDDNV 167 (335)
Q Consensus 95 ----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 167 (335)
....|...|.+++|+| ++. +++++.||+|++||+.+++... ....+|...|++++|+|++++|++++.|+.
T Consensus 85 ~~~~~~~~~~~~V~~~~~s~-d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~ 162 (357)
T 4g56_B 85 SLCTAGVQTEAGVTDVAWVS-EKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFS 162 (357)
T ss_dssp GGCSEEEECSSCEEEEEEET-TTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred eEecccCCCCCCEEEEEEcC-CCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCe
Confidence 3346888999999999 665 5567889999999998765432 234579999999999999999999999999
Q ss_pred EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec---CCcEeEEEeCCC
Q 019847 168 VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA---KAQICGLEWNRH 244 (335)
Q Consensus 168 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~ 244 (335)
|++||+++ .+.+..+.+|...|.+++|+|++..++++++ .|+.|++||++++++...+.. ...+.+++|+|+
T Consensus 163 v~iwd~~~---~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~--~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 237 (357)
T 4g56_B 163 VKVWDLSQ---KAVLKSYNAHSSEVNCVAACPGKDTIFLSCG--EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPE 237 (357)
T ss_dssp EEEEETTT---TEEEEEECCCSSCEEEEEECTTCSSCEEEEE--TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTT
T ss_pred EEEEECCC---CcEEEEEcCCCCCEEEEEEccCCCceeeeec--cCCceEEEECCCCceeeeeeeccccccccchhhhhc
Confidence 99999876 4567788899999999999999987777776 899999999999987766543 457999999998
Q ss_pred Cc-eeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCC-CEEEEEeCCCcEEEEecCCCCCCCCcccc
Q 019847 245 HK-EILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDG-LTVATAGADETIRFWEAFGPSGDEDSVSH 322 (335)
Q Consensus 245 ~~-~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 322 (335)
+. +++++ +.|+.|++||+++++.+..+..|...|++++|+|++ ++|++|+.||.|+|||+..++... ..+|
T Consensus 238 ~~~~la~g------~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~-~~~H 310 (357)
T 4g56_B 238 KDDTFACG------DETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR-DLSH 310 (357)
T ss_dssp STTEEEEE------ESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE-ECCC
T ss_pred ccceEEEe------ecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE-ECCC
Confidence 65 55555 679999999999999999999999999999999987 689999999999999998875543 4589
Q ss_pred ccccccceec
Q 019847 323 LAGLVSLKTS 332 (335)
Q Consensus 323 ~~~i~~~~~~ 332 (335)
.+.|.++.|+
T Consensus 311 ~~~V~~vafs 320 (357)
T 4g56_B 311 RDFVTGVAWS 320 (357)
T ss_dssp SSCEEEEEEC
T ss_pred CCCEEEEEEe
Confidence 9999988875
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-43 Score=310.65 Aligned_cols=273 Identities=24% Similarity=0.498 Sum_probs=239.8
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
+...+.+++|+++ .+++++.|+.|++||....+ ...+.+|...|.+++|+|++++|++++.||.|++||. +++.
T Consensus 302 h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~ 377 (577)
T 2ymu_A 302 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH---LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQL 377 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE---EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe---eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCE
Confidence 3456778888874 56777899999999987654 3456789999999999999999999999999999995 5778
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 172 (335)
+..+..|...|.+++|+| ++++|++++.|+.|++||.. + .....+.+|...|++++|+|++++|++++.|+.|++||
T Consensus 378 ~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~~-~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~ 454 (577)
T 2ymu_A 378 LQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454 (577)
T ss_dssp EEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTT-C-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCC-C-CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 888999999999999999 99999999999999999964 3 44667889999999999999999999999999999999
Q ss_pred ccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeee
Q 019847 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 251 (335)
.. .+.+..+.+|...|.+++|+|+++.+ ++++ .|+.|++||. +++++..+.. ...+.+++|+|++++++++
T Consensus 455 ~~----~~~~~~~~~~~~~v~~~~~spd~~~l-as~~--~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 526 (577)
T 2ymu_A 455 RN----GQLLQTLTGHSSSVRGVAFSPDGQTI-ASAS--DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASA 526 (577)
T ss_dssp TT----SCEEEEEECCSSCEEEEEECTTSCEE-EEEE--TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred CC----CCEEEEEcCCCCCEEEEEEcCCCCEE-EEEe--CCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEE
Confidence 64 24567778899999999999999754 4544 7999999995 6778887775 4689999999999999887
Q ss_pred eeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 252 HGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 252 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
+.|+.|++||. +++++..+.+|.+.|++++|+||+++|++++.|+.|++||
T Consensus 527 ------~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 527 ------SDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp ------ETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ------ECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 77999999995 6788899999999999999999999999999999999997
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-43 Score=291.62 Aligned_cols=274 Identities=21% Similarity=0.358 Sum_probs=226.9
Q ss_pred eeEEeecCCCC-CceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEe---eecccccceeEeeecCCCCCEEEEeeCCCc
Q 019847 49 KKLLQVPGEDD-YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR---NLEGHHRRVATSSWNHWNGHILTSGSKDKS 124 (335)
Q Consensus 49 ~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 124 (335)
.....+++|.. .|.+++|+|+|++||+|+.|+.|+|||+++++... ...+|...|.+++|+| ++++|++|+.|+.
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDAT 84 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-CCCEEEEEECCCc
Confidence 34556778987 99999999999999999999999999998876432 2367999999999999 9999999999999
Q ss_pred EEEEecccCC-eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCc
Q 019847 125 IINHDVRVSN-NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203 (335)
Q Consensus 125 i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 203 (335)
+++||+.... .....+.+|...|.+++|+|++++|++++.|+.|++||++.......+..+.+|...|.+++|+|++..
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence 9999997654 345678899999999999999999999999999999999876655667778899999999999999975
Q ss_pred EEEEecCCCCCeEEEEECCCCce--EEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC---------
Q 019847 204 VLATGGGREDGCIKIWNVQKGTC--IHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM--------- 271 (335)
Q Consensus 204 ~~~~~~g~~d~~i~i~d~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~--------- 271 (335)
+ ++++ .|+.|++||.++++. ...+.. ...|.+++|+|++++++++ +.|+.|++||....
T Consensus 165 l-~s~s--~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~------s~D~~v~iW~~~~~~~~~~~~~~ 235 (345)
T 3fm0_A 165 L-ASAS--YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASC------SDDRTVRIWRQYLPGNEQGVACS 235 (345)
T ss_dssp E-EEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEE------ETTSCEEEEEEECTTCTTCCCCC
T ss_pred E-EEEe--CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEE------eCCCeEEEeccccCCCCccceee
Confidence 4 4554 899999999988754 345543 5689999999999999888 78999999996332
Q ss_pred ------ceeecccC-CCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC---------ccccccccccceec
Q 019847 272 ------TKVGELQS-SNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED---------SVSHLAGLVSLKTS 332 (335)
Q Consensus 272 ------~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~---------~~~~~~~i~~~~~~ 332 (335)
+.+..+.+ |...|.+++|+|++..|++++.|+.|++|+......... ..+|...|.++.++
T Consensus 236 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~ 312 (345)
T 3fm0_A 236 GSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN 312 (345)
T ss_dssp ---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC
T ss_pred ccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe
Confidence 12233333 788999999999999999999999999999987543322 13677778877765
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-43 Score=309.18 Aligned_cols=295 Identities=23% Similarity=0.441 Sum_probs=252.6
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
+...+.+++|+++ .+++++.|+.|++|+.+. +. ...+.+|...|.+++|+|++++|++++.||.|++||... +.
T Consensus 261 ~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~--~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~ 336 (577)
T 2ymu_A 261 HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QL--LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QH 336 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CE
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-cE--EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-Ce
Confidence 3456788999874 577788999999999654 33 345678999999999999999999999999999999764 45
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 172 (335)
+..+..|...+.+++|+| +++.|++++.|+.+++||.. + .....+..|...|.+++|+|++++|++++.|+.|++||
T Consensus 337 ~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~-~-~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~ 413 (577)
T 2ymu_A 337 LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413 (577)
T ss_dssp EEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT-C-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCC-C-CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 667888999999999999 99999999999999999964 3 44667788999999999999999999999999999999
Q ss_pred ccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee-cCCcEeEEEeCCCCceeeee
Q 019847 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID-AKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (335)
.. .+.+..+.+|...|.+++|+|++..++ +++ .|+.|++||.. ++.+..+. +...+.+++|+|++++++++
T Consensus 414 ~~----~~~~~~~~~~~~~v~~~~~s~d~~~l~-~~~--~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~ 485 (577)
T 2ymu_A 414 RN----GQLLQTLTGHSSSVWGVAFSPDDQTIA-SAS--DDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASA 485 (577)
T ss_dssp TT----CCEEEEEECCSSCEEEEEECTTSSEEE-EEE--TTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEE
T ss_pred CC----CCEEEEecCCCCCeEEEEECCCCCEEE-EEc--CCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 54 345777888999999999999997554 444 79999999964 56666665 45689999999999999987
Q ss_pred eeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcccccccccccee
Q 019847 252 HGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 252 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~ 331 (335)
+.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.||.|++||.. ++....+.+|...|.++.|
T Consensus 486 ------~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~~~~~~~~~h~~~v~~~~f 557 (577)
T 2ymu_A 486 ------SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAF 557 (577)
T ss_dssp ------ETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEE
T ss_pred ------eCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-CCEEEEEcCCCCCEEEEEE
Confidence 77999999994 688889999999999999999999999999999999999964 4455567789999988887
Q ss_pred c
Q 019847 332 S 332 (335)
Q Consensus 332 ~ 332 (335)
+
T Consensus 558 s 558 (577)
T 2ymu_A 558 S 558 (577)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-43 Score=292.78 Aligned_cols=289 Identities=15% Similarity=0.224 Sum_probs=241.8
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
+...+.+++|+++ .+++++.|+.|++||+++++......+.+|...|.+++|+|++++|++++.||.|++||+++++.
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 86 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence 4557888999984 45556689999999999987555667778999999999999999999999999999999988875
Q ss_pred Eee--ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe---eeEEeecCCCCEEEEEeecCCCEEEEEeCCCe
Q 019847 93 VRN--LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN---VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNV 167 (335)
Q Consensus 93 ~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 167 (335)
... +..|...|.+++|+| ++++|++++.|+.|++||++.... .......|...|.+++|+|++++|++++.||.
T Consensus 87 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 165 (372)
T 1k8k_C 87 KPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 165 (372)
T ss_dssp EEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred eeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCC
Confidence 444 466889999999999 899999999999999999987663 23444678999999999999999999999999
Q ss_pred EEEEEccCC---------------CcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec
Q 019847 168 VRIWERSKM---------------SSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA 232 (335)
Q Consensus 168 i~iwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 232 (335)
|++||++.. .....+..+..|...|.+++|+|++..++ +++ .|+.|++||+++++.+..+..
T Consensus 166 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~--~d~~i~i~d~~~~~~~~~~~~ 242 (372)
T 1k8k_C 166 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA-WVS--HDSTVCLADADKKMAVATLAS 242 (372)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE-EEE--TTTEEEEEEGGGTTEEEEEEC
T ss_pred EEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE-EEe--CCCEEEEEECCCCceeEEEcc
Confidence 999997521 12455677778999999999999997554 444 799999999999999988876
Q ss_pred C-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC--Cc--------------------------------ee---
Q 019847 233 K-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN--MT--------------------------------KV--- 274 (335)
Q Consensus 233 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~--~~--------------------------------~~--- 274 (335)
+ .++.+++|+|++.+++++ .|+.|++|++.+ ++ ..
T Consensus 243 ~~~~v~~~~~~~~~~~l~~~-------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (372)
T 1k8k_C 243 ETLPLLAVTFITESSLVAAG-------HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA 315 (372)
T ss_dssp SSCCEEEEEEEETTEEEEEE-------TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC------
T ss_pred CCCCeEEEEEecCCCEEEEE-------eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCc
Confidence 5 489999999999987765 599999999987 32 00
Q ss_pred ---ecc-cCCCCceeEeEEc-CCC---CEEEEEeCCCcEEEEecCCCC
Q 019847 275 ---GEL-QSSNSRILDLSQS-PDG---LTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 275 ---~~~-~~~~~~i~~~~~~-~~~---~~l~~~~~dg~v~iw~~~~~~ 314 (335)
..+ .+|...|++++|. ++| .+|++|+.||.|++|++...+
T Consensus 316 ~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 316 AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp ---CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 233 4899999999966 666 999999999999999997643
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-43 Score=295.51 Aligned_cols=285 Identities=17% Similarity=0.246 Sum_probs=237.8
Q ss_pred ccccceeeeecC------CceEEEecCCeEEEEEecCCceeeEEe---ecCCCCCceEEEEcCC----CCEEEEEECCCc
Q 019847 15 EDYYSKVIDWGR------NNVLAVALGPVLFLWKWENGKVKKLLQ---VPGEDDYPTSVSWSHD----AKTLAVGYMDSK 81 (335)
Q Consensus 15 ~~~~~~~~~~~~------~~~~~~~~~~~i~vw~~~~~~~~~~~~---~~~~~~~v~~~~~~~~----~~~l~~~~~dg~ 81 (335)
+...+.+++|++ ..+++++.++.|++||+.+++....+. ...|...|++++|+|+ +++|++|+.||.
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~ 96 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGI 96 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCE
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCE
Confidence 567889999995 247788889999999999776544333 2347789999999998 679999999999
Q ss_pred EEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEe---ecCCCCEEEEEeecCCCE
Q 019847 82 LQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI---KAHSGEVCGLKWSNEGNL 158 (335)
Q Consensus 82 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~ 158 (335)
|++||+.+++.+..+..|...|.+++|+|.++++|++++.||.|++||+++++. ...+ ..|...|.+++|+|++++
T Consensus 97 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~ 175 (366)
T 3k26_A 97 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL-VAIFGGVEGHRDEVLSADYDLLGEK 175 (366)
T ss_dssp EEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-EEEECSTTSCSSCEEEEEECTTSSE
T ss_pred EEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-EEEecccccccCceeEEEECCCCCE
Confidence 999999999999999999999999999997889999999999999999986654 4444 679999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCCcccc-------------------------eeeccCCCCCeeEEEecCCCCcEEEEecCCCC
Q 019847 159 LASGGDDNVVRIWERSKMSSSKS-------------------------LHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213 (335)
Q Consensus 159 l~~~~~dg~i~iwd~~~~~~~~~-------------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 213 (335)
|++++.||.|++||++....... ......|...|.+++|+ +. ++++++ .|
T Consensus 176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~--~d 250 (366)
T 3k26_A 176 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKS--CE 250 (366)
T ss_dssp EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEEC--SS
T ss_pred EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEe--cC
Confidence 99999999999999876432111 12233488999999999 43 666665 89
Q ss_pred CeEEEEECCCCce--------------EEEeec-CCcEeEEEeCCC--CceeeeeeeeeeecCCCeEEEEECCCCceee-
Q 019847 214 GCIKIWNVQKGTC--------------IHGIDA-KAQICGLEWNRH--HKEILSGHGFSASGDGNKLCLWKYPNMTKVG- 275 (335)
Q Consensus 214 ~~i~i~d~~~~~~--------------~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~- 275 (335)
+.|++||+++++. +..+.. ...+.+++|+|+ +++++++ +.||.|++||+.++++..
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~------~~dg~i~vwd~~~~~~~~~ 324 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG------NQVGKLYVWDLEVEDPHKA 324 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE------CTTSCEEEEECCSSSGGGC
T ss_pred CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE------ecCCcEEEEECCCCCCccc
Confidence 9999999987644 555543 457999999999 9999887 789999999999886543
Q ss_pred ---cccCC--CCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 276 ---ELQSS--NSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 276 ---~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
.+..| ...|++++|+|++++|++++.||.|++||+.
T Consensus 325 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 325 KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 67777 7899999999999999999999999999985
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=295.42 Aligned_cols=285 Identities=18% Similarity=0.321 Sum_probs=235.7
Q ss_pred ccccceeeeecCC--ceEEEe-c---CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCC---CCEEEEEECCCcEEEE
Q 019847 15 EDYYSKVIDWGRN--NVLAVA-L---GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHD---AKTLAVGYMDSKLQLW 85 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~-~---~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iw 85 (335)
+...+.+++|+++ .+++++ . |+.|++||+++++....... +|...|.+++|+|+ +++|++|+.||.|++|
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 95 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIW 95 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-EESSCEEEEECTTCCTTTCCEEEEETTSCEEEE
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-cccCcEEEEEEcCCCCCCceEEEecCCCeEEEE
Confidence 5668999999984 455555 2 89999999999887655444 68899999999998 6999999999999999
Q ss_pred eCCCce-eEeeecccccceeEee------ecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCC----CEEEEE---
Q 019847 86 DAETSK-LVRNLEGHHRRVATSS------WNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSG----EVCGLK--- 151 (335)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~v~~~~------~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~----~i~~~~--- 151 (335)
|+.+++ .+..+..|...|.++. |+| ++++|++++.||.|++||+++.......+..|.+ .+.+++
T Consensus 96 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (357)
T 3i2n_A 96 NLEAPEMPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGN 174 (357)
T ss_dssp CTTSCSSCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEEC
T ss_pred eCCCCCccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEe
Confidence 999988 8888999999999995 466 8999999999999999999987655666655554 899998
Q ss_pred -eecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecC---CCCcEEEEecCCCCCeEEEEECCCCceE
Q 019847 152 -WSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP---HQVNVLATGGGREDGCIKIWNVQKGTCI 227 (335)
Q Consensus 152 -~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~g~~d~~i~i~d~~~~~~~ 227 (335)
|+|++++|++++.||.|++||++.... .....|...|.+++|+| ++..+++ ++ .||.|++||+++++..
T Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~l~~-~~--~dg~i~i~d~~~~~~~ 247 (357)
T 3i2n_A 175 AYNQEERVVCAGYDNGDIKLFDLRNMAL----RWETNIKNGVCSLEFDRKDISMNKLVA-TS--LEGKFHVFDMRTQHPT 247 (357)
T ss_dssp CCC-CCCEEEEEETTSEEEEEETTTTEE----EEEEECSSCEEEEEESCSSSSCCEEEE-EE--STTEEEEEEEEEEETT
T ss_pred ccCCCCCEEEEEccCCeEEEEECccCce----eeecCCCCceEEEEcCCCCCCCCEEEE-EC--CCCeEEEEeCcCCCcc
Confidence 788999999999999999999887432 23355888999999999 7765554 44 7999999999887665
Q ss_pred EEe------ecCCcEeEEEeCCCCc-eeeeeeeeeeecCCCeEEEEECCCC-------------------ceeecccCCC
Q 019847 228 HGI------DAKAQICGLEWNRHHK-EILSGHGFSASGDGNKLCLWKYPNM-------------------TKVGELQSSN 281 (335)
Q Consensus 228 ~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~d~~~~-------------------~~~~~~~~~~ 281 (335)
..+ .+...+.+++|+|++. +++++ +.|+.|++||++++ +.+..+..|.
T Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~------~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (357)
T 3i2n_A 248 KGFASVSEKAHKSTVWQVRHLPQNRELFLTA------GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST 321 (357)
T ss_dssp TEEEEEEEECCSSCEEEEEEETTEEEEEEEE------ETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCS
T ss_pred cceeeeccCCCcCCEEEEEECCCCCcEEEEE------eCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCC
Confidence 444 3567899999999998 67766 77999999998754 3566778899
Q ss_pred CceeEeEEcCCCCEEE-EEeCCCcEEEEecCCCC
Q 019847 282 SRILDLSQSPDGLTVA-TAGADETIRFWEAFGPS 314 (335)
Q Consensus 282 ~~i~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~ 314 (335)
..|++++|+|++++|+ +++.||.|++|++...+
T Consensus 322 ~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 322 QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 9999999999999998 89999999999998754
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=298.26 Aligned_cols=285 Identities=14% Similarity=0.240 Sum_probs=236.4
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEE
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHIL 116 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 116 (335)
.+..|+..... ....+.+|...|++++|+|++++|++|+.||+|++||+.+++....+..|...|.+++|+| ++++|
T Consensus 47 ~~~~~~~~~~~--~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l 123 (380)
T 3iz6_a 47 TAVSFNPTDLV--CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP-NGQSV 123 (380)
T ss_dssp GCCCCCCCCCE--EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECT-TSSEE
T ss_pred cccccccceeE--EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECC-CCCEE
Confidence 44456655443 3556789999999999999999999999999999999999999999999999999999999 99999
Q ss_pred EEeeCCCcEEEEecccCC------eeeEEeecCCCCEEEEEeecC-CCEEEEEeCCCeEEEEEccCCCccccee--eccC
Q 019847 117 TSGSKDKSIINHDVRVSN------NVTSCIKAHSGEVCGLKWSNE-GNLLASGGDDNVVRIWERSKMSSSKSLH--RFTD 187 (335)
Q Consensus 117 ~~~~~dg~i~~~d~~~~~------~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~ 187 (335)
++|+.|+.+++||+.... .....+.+|.+.+.++.|+|+ +..|++|+.|++|++||++++.....+. ...+
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~ 203 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG 203 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSS
T ss_pred EEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCC
Confidence 999999999999986432 234557789999999999996 5679999999999999988754322111 1157
Q ss_pred CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC-CCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEE
Q 019847 188 HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ-KGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265 (335)
Q Consensus 188 ~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 265 (335)
|...|.+++|+|.+..++++++ .|+.|++||++ .++.+..+.. ...|.+++|+|++.+++++ +.|+.|++
T Consensus 204 h~~~v~~~~~~~~~~~~l~sgs--~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~------s~D~~i~l 275 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFISGS--CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTG------SDDGTCRL 275 (380)
T ss_dssp CCSCEEEEEECSSSCCEEEEEE--TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEE------CSSSCEEE
T ss_pred CccCeEEEEeecCCCCEEEEEE--CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEE------cCCCeEEE
Confidence 8899999999885556777777 89999999998 4566666664 5689999999999999888 78999999
Q ss_pred EECCCCceeecccCCC-------CceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc----cccccccccceec
Q 019847 266 WKYPNMTKVGELQSSN-------SRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS----VSHLAGLVSLKTS 332 (335)
Q Consensus 266 ~d~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~----~~~~~~i~~~~~~ 332 (335)
||+++++.+..+..+. ..|++++|+|+|++|++|+.||.|++||+..++..... .+|...|.++.++
T Consensus 276 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s 353 (380)
T 3iz6_a 276 FDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS 353 (380)
T ss_dssp EETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC
T ss_pred EECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC
Confidence 9999998887765443 24899999999999999999999999999876654332 5688888888765
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-42 Score=293.35 Aligned_cols=282 Identities=20% Similarity=0.307 Sum_probs=238.2
Q ss_pred cccceeeeecCC---ceEEEecCCeEEEEEe----cCCc------eeeEEee--c------CCCCCceEEEEcCCCCEEE
Q 019847 16 DYYSKVIDWGRN---NVLAVALGPVLFLWKW----ENGK------VKKLLQV--P------GEDDYPTSVSWSHDAKTLA 74 (335)
Q Consensus 16 ~~~~~~~~~~~~---~~~~~~~~~~i~vw~~----~~~~------~~~~~~~--~------~~~~~v~~~~~~~~~~~l~ 74 (335)
...+.+++|+++ .+++++.|+.|++|++ .+++ ....+.. . +|...|++++|+|++++|+
T Consensus 45 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 124 (425)
T 1r5m_A 45 LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIV 124 (425)
T ss_dssp CSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEE
T ss_pred cCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEE
Confidence 357889999984 4666778999999999 8777 2222221 1 2677999999999999999
Q ss_pred EEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee------------------
Q 019847 75 VGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV------------------ 136 (335)
Q Consensus 75 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------------------ 136 (335)
+++.||.|++|| .+++.+..+..|...|.+++|+| ++++|++++.|+.|++||++++...
T Consensus 125 ~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (425)
T 1r5m_A 125 TGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH 202 (425)
T ss_dssp EEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC------------
T ss_pred EEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccc
Confidence 999999999999 67888889999999999999999 9999999999999999998754321
Q ss_pred -------------------------------------eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcc
Q 019847 137 -------------------------------------TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSS 179 (335)
Q Consensus 137 -------------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 179 (335)
...+..|...|.+++|+|++++|++++.||.|++||++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--- 279 (425)
T 1r5m_A 203 SGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG--- 279 (425)
T ss_dssp ---CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB---
T ss_pred cCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC---
Confidence 1234468889999999999999999999999999998764
Q ss_pred cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeec
Q 019847 180 KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASG 258 (335)
Q Consensus 180 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (335)
+.+..+..|...|.+++|+|++ ++++++ .|+.|++||+++++.+..+.. ...+.+++|+|++++++++ +
T Consensus 280 ~~~~~~~~~~~~i~~~~~~~~~--~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~------~ 349 (425)
T 1r5m_A 280 NSQNCFYGHSQSIVSASWVGDD--KVISCS--MDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVA------F 349 (425)
T ss_dssp SCSEEECCCSSCEEEEEEETTT--EEEEEE--TTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEE------E
T ss_pred ccceEecCCCccEEEEEECCCC--EEEEEe--CCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEE------E
Confidence 4466667799999999999998 555555 799999999999999888876 5689999999999999887 6
Q ss_pred CCCeEEEEECCCCc--------------------eeecccCCCC--ceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 259 DGNKLCLWKYPNMT--------------------KVGELQSSNS--RILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 259 ~~~~i~i~d~~~~~--------------------~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
.|+.|++||+.+++ .+..+..|.. .|++++|+|++++|++++.||.|++|++.+
T Consensus 350 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 350 MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp TTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred CCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 79999999999888 8888999976 999999999999999999999999999863
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=281.19 Aligned_cols=251 Identities=21% Similarity=0.340 Sum_probs=210.4
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC--ceeEeeecccccceeEeeecCC-CCCEEEEeeCCCcEEEEe
Q 019847 53 QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET--SKLVRNLEGHHRRVATSSWNHW-NGHILTSGSKDKSIINHD 129 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d 129 (335)
.+.+|...|++++|+|+|++||+|+.|++|++||+.+ .+.+..+.+|..+|.+++|++. ++++|++|+.|++|++||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 4568999999999999999999999999999999974 4678889999999999999863 489999999999999999
Q ss_pred cccCC-eeeEEeecCCCCEEEEEeecC--CCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCC-----
Q 019847 130 VRVSN-NVTSCIKAHSGEVCGLKWSNE--GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQ----- 201 (335)
Q Consensus 130 ~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----- 201 (335)
++++. .....+..|...|.+++|+|+ +.+|++++.|+.|++||++..... ....+.+|...|.+++|+|++
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT-SPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB-CCEEEECCSSCEEEEEECCCC-----
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce-eeeeeecccCccceEeecCCcccccc
Confidence 98654 234556789999999999997 889999999999999999865322 234567899999999999973
Q ss_pred -------CcEEEEecCCCCCeEEEEECCCCc----eEEEeec-CCcEeEEEeCCCC---ceeeeeeeeeeecCCCeEEEE
Q 019847 202 -------VNVLATGGGREDGCIKIWNVQKGT----CIHGIDA-KAQICGLEWNRHH---KEILSGHGFSASGDGNKLCLW 266 (335)
Q Consensus 202 -------~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~i~ 266 (335)
..++++++ .|+.|++||+++++ ....+.. ...|.+++|+|++ .+++++ +.|+.|++|
T Consensus 163 ~~~~~~~~~~l~sgs--~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~------s~D~~v~iW 234 (297)
T 2pm7_B 163 EHNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV------SQDRTCIIW 234 (297)
T ss_dssp -------CCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE------ETTSCEEEE
T ss_pred cCCCCCCcceEEEEc--CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE------ECCCcEEEE
Confidence 24677776 89999999998776 4555654 4679999999995 667766 789999999
Q ss_pred ECCCCc---eeecc--cCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 267 KYPNMT---KVGEL--QSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 267 d~~~~~---~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
|+++.. ....+ ..|...|.+++|+|++++|++++.||.|++|+...
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 987743 11222 56788999999999999999999999999999864
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=292.92 Aligned_cols=294 Identities=16% Similarity=0.271 Sum_probs=251.6
Q ss_pred cceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec
Q 019847 18 YSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97 (335)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 97 (335)
.+.++.++++.+++++.|+.|++||+.+++.. ..+.+|...|.+++|+|++ +|++|+.||.|++||+++++.+..+.
T Consensus 124 v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~--~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~ 200 (464)
T 3v7d_B 124 VITCLQFEDNYVITGADDKMIRVYDSINKKFL--LQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFE 200 (464)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred cEEEEEECCCEEEEEcCCCcEEEEECCCCcEE--EEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEEC
Confidence 35688998899999999999999999998864 4566999999999999988 99999999999999999999999999
Q ss_pred ccccceeEeeecC-CCCCEEEEeeCCCcEEEEecccCCee----------------------eEEeecCCCCEEEEEeec
Q 019847 98 GHHRRVATSSWNH-WNGHILTSGSKDKSIINHDVRVSNNV----------------------TSCIKAHSGEVCGLKWSN 154 (335)
Q Consensus 98 ~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~----------------------~~~~~~~~~~i~~~~~~~ 154 (335)
+|...|.+++|++ .++.++++++.||.|++||+++.... ...+.+|...+.++ ++
T Consensus 201 ~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~ 278 (464)
T 3v7d_B 201 GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG 278 (464)
T ss_dssp CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EE
T ss_pred CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cC
Confidence 9999999999985 26789999999999999999865432 44567888888887 57
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-C
Q 019847 155 EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-K 233 (335)
Q Consensus 155 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~ 233 (335)
+++++++++.||.|++||+++ .+.+..+.+|...|.+++|+|++..++ +++ .|+.|++||+++++++..+.. .
T Consensus 279 ~~~~l~~~~~d~~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~--~dg~i~vwd~~~~~~~~~~~~h~ 352 (464)
T 3v7d_B 279 HGNIVVSGSYDNTLIVWDVAQ---MKCLYILSGHTDRIYSTIYDHERKRCI-SAS--MDTTIRIWDLENGELMYTLQGHT 352 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTT---TEEEEEECCCSSCEEEEEEETTTTEEE-EEE--TTSCEEEEETTTTEEEEEECCCS
T ss_pred CCCEEEEEeCCCeEEEEECCC---CcEEEEecCCCCCEEEEEEcCCCCEEE-EEe--CCCcEEEEECCCCcEEEEEeCCC
Confidence 788999999999999999876 455777888999999999999987555 444 799999999999999998875 4
Q ss_pred CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 234 AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
..+.++.++ +.+++++ +.|+.|++||+.++....... +...+..++|+|++++|++++ ||.|++||+.++
T Consensus 353 ~~v~~~~~~--~~~l~s~------s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 353 ALVGLLRLS--DKFLVSA------AADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp SCEEEEEEC--SSEEEEE------ETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred CcEEEEEEc--CCEEEEE------eCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 679999997 4667766 779999999999988766553 556678889999999999998 899999999998
Q ss_pred CCCCC-ccccccccccceec
Q 019847 314 SGDED-SVSHLAGLVSLKTS 332 (335)
Q Consensus 314 ~~~~~-~~~~~~~i~~~~~~ 332 (335)
+.... ...|...|.++.++
T Consensus 423 ~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 423 KLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp CEEESCTTTTCSEEEEEEEE
T ss_pred cEEehhhccCCCcEEEEEec
Confidence 77654 56777888877764
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=297.16 Aligned_cols=283 Identities=15% Similarity=0.199 Sum_probs=219.6
Q ss_pred cccceeeeecCC-c-eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce--
Q 019847 16 DYYSKVIDWGRN-N-VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK-- 91 (335)
Q Consensus 16 ~~~~~~~~~~~~-~-~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-- 91 (335)
...+.+++|+++ . +++++.|+.|++||+.++.......+.+|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~ 90 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW 90 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CC
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce
Confidence 346888999984 3 555558999999999988545566778999999999999999999999999999999999877
Q ss_pred -eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe--eeEEeec-CCCCEEEEEeecCCCEEEEEeCCCe
Q 019847 92 -LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN--VTSCIKA-HSGEVCGLKWSNEGNLLASGGDDNV 167 (335)
Q Consensus 92 -~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~ 167 (335)
....+..|...|.+++|+| ++++|++++.|+.|++||++.... ....+.. |...|.+++|+|++++|++++.|+.
T Consensus 91 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 169 (377)
T 3dwl_C 91 KQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRK 169 (377)
T ss_dssp CCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSC
T ss_pred eeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCE
Confidence 6677788999999999999 999999999999999999987653 3455666 9999999999999999999999999
Q ss_pred EEEEEccCCC---------------cccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce----EE
Q 019847 168 VRIWERSKMS---------------SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC----IH 228 (335)
Q Consensus 168 i~iwd~~~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~----~~ 228 (335)
|++||++... ....+..+ .|...|.+++|+|++..+++. + .|+.|++||+++++. +.
T Consensus 170 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~-~--~d~~i~iwd~~~~~~~~~~~~ 245 (377)
T 3dwl_C 170 AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYA-G--HDSSVTIAYPSAPEQPPRALI 245 (377)
T ss_dssp EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEE-E--TTTEEC-CEECSTTSCEEECC
T ss_pred EEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEE-e--CCCcEEEEECCCCCCcceeeE
Confidence 9999986322 12344555 899999999999999755554 4 799999999999887 56
Q ss_pred Eeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc--ee-------------------------------
Q 019847 229 GIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT--KV------------------------------- 274 (335)
Q Consensus 229 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~--~~------------------------------- 274 (335)
.+.. ..++.+++|+|++++++++ ++++.+ +|+..... ..
T Consensus 246 ~~~~~~~~v~~~~~s~~~~~l~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (377)
T 3dwl_C 246 TVKLSQLPLRSLLWANESAIVAAG------YNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFT 318 (377)
T ss_dssp CEECSSSCEEEEEEEETTEEEEEE------SSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------
T ss_pred eecCCCCceEEEEEcCCCCEEEEE------cCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccc
Confidence 6654 4579999999999998876 445544 77654211 00
Q ss_pred ---e----------------cccCCCCceeEeEEcCCC-C---EEEEEeCCCcEEEEec
Q 019847 275 ---G----------------ELQSSNSRILDLSQSPDG-L---TVATAGADETIRFWEA 310 (335)
Q Consensus 275 ---~----------------~~~~~~~~i~~~~~~~~~-~---~l~~~~~dg~v~iw~~ 310 (335)
. ....|...|+++++.+.. . .|+|++.||.|++||+
T Consensus 319 ~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 319 ALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 011388999999976643 3 6999999999999985
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=288.22 Aligned_cols=284 Identities=19% Similarity=0.346 Sum_probs=230.2
Q ss_pred cCCeEEEEEecCCcee--eEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeeccccc----------
Q 019847 34 LGPVLFLWKWENGKVK--KLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHR---------- 101 (335)
Q Consensus 34 ~~~~i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---------- 101 (335)
.+....+|+....+.. ......+|...|.+++|+|+|++||+|+ ++.+++|++.+++.+..+..+..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~ 116 (393)
T 1erj_A 38 TNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 116 (393)
T ss_dssp CSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------
T ss_pred CCceEEEECCCCCcccCceeEEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccc
Confidence 3344456765443321 1222236999999999999999999986 68999999999998887765432
Q ss_pred --------ceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 102 --------RVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 102 --------~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
.|.+++|+| ++++|++|+.|+.|++||+++.+ ....+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 117 ~~~~~~~~~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~ 194 (393)
T 1erj_A 117 SSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL 194 (393)
T ss_dssp ----CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cccCCCceeEEEEEECC-CCCEEEEEcCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEEC
Confidence 489999999 99999999999999999998654 46678899999999999999999999999999999998
Q ss_pred cCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee--------cCCcEeEEEeCCCC
Q 019847 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID--------AKAQICGLEWNRHH 245 (335)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--------~~~~~~~~~~~~~~ 245 (335)
++.. ....+. +...+.+++|+|....++++++ .|+.|++||+++++.+..+. +...+.+++|+|++
T Consensus 195 ~~~~---~~~~~~-~~~~v~~~~~~~~~~~~l~~~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g 268 (393)
T 1erj_A 195 RTGQ---CSLTLS-IEDGVTTVAVSPGDGKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 268 (393)
T ss_dssp TTTE---EEEEEE-CSSCEEEEEECSTTCCEEEEEE--TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS
T ss_pred CCCe---eEEEEE-cCCCcEEEEEECCCCCEEEEEc--CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC
Confidence 8643 233333 5677999999994445666766 89999999999998877762 34579999999999
Q ss_pred ceeeeeeeeeeecCCCeEEEEECCCC------------ceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 246 KEILSGHGFSASGDGNKLCLWKYPNM------------TKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~i~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
++++++ +.|+.|++||+.+. .....+.+|...|.+++|+|++++|++|+.||.|++||+..+
T Consensus 269 ~~l~s~------s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 269 QSVVSG------SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp SEEEEE------ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred CEEEEE------eCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 999887 77999999999763 334567789999999999999999999999999999999998
Q ss_pred CCCCCccccccccccceec
Q 019847 314 SGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 314 ~~~~~~~~~~~~i~~~~~~ 332 (335)
+......+|...|.++.++
T Consensus 343 ~~~~~l~~h~~~v~~v~~~ 361 (393)
T 1erj_A 343 NPLLMLQGHRNSVISVAVA 361 (393)
T ss_dssp CEEEEEECCSSCEEEEEEC
T ss_pred eEEEEECCCCCCEEEEEec
Confidence 8777777888888877653
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-41 Score=275.24 Aligned_cols=279 Identities=17% Similarity=0.261 Sum_probs=238.1
Q ss_pred cccccceeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc--
Q 019847 14 MEDYYSKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-- 90 (335)
Q Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-- 90 (335)
.+...+.+++|.++ .+++++.||.|++||+++++.... +..|...|.+++|+|++++|++++.||.|++|++...
T Consensus 16 ~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~ 93 (313)
T 3odt_A 16 GHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTV--VYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG 93 (313)
T ss_dssp CCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEE--EEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT
T ss_pred CCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEE--eecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC
Confidence 35667888888444 577778999999999988876444 4468999999999999999999999999999998754
Q ss_pred -eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeE
Q 019847 91 -KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVV 168 (335)
Q Consensus 91 -~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i 168 (335)
+.+..+..|...|.++.| +++.+++++.||.|++|| .......+..|...+.+++|.| +++++++++.||.|
T Consensus 94 ~~~~~~~~~~~~~i~~~~~---~~~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 167 (313)
T 3odt_A 94 EDPLYTLIGHQGNVCSLSF---QDGVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTI 167 (313)
T ss_dssp SCC-CEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCE
T ss_pred CCcccchhhcccCEEEEEe---cCCEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCE
Confidence 567778889999999999 567999999999999999 3445666788999999999998 99999999999999
Q ss_pred EEEEccCCCcccceeeccC-CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee-cCCcEeEEEeCCCCc
Q 019847 169 RIWERSKMSSSKSLHRFTD-HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID-AKAQICGLEWNRHHK 246 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 246 (335)
++||.. .....+.. |...+.+++|+|++. +++++ .|+.|++||+++++.+..+. +...+.+++|+|++
T Consensus 168 ~i~d~~-----~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~- 237 (313)
T 3odt_A 168 KLWQND-----KVIKTFSGIHNDVVRHLAVVDDGH--FISCS--NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG- 237 (313)
T ss_dssp EEEETT-----EEEEEECSSCSSCEEEEEEEETTE--EEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-
T ss_pred EEEecC-----ceEEEEeccCcccEEEEEEcCCCe--EEEcc--CCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-
Confidence 999933 33445555 889999999999986 44544 79999999999999998887 45689999999999
Q ss_pred eeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 247 EILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
.++++ +.|+.|++||+.+++.+..+..|...|++++|+|+++ +++++.||.|++|++..++...
T Consensus 238 ~l~~~------~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 238 DIVSC------GEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp CEEEE------ETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred CEEEE------ecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 46655 6799999999999999999999999999999999998 6679999999999999876544
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=294.55 Aligned_cols=288 Identities=14% Similarity=0.230 Sum_probs=237.4
Q ss_pred cccccceeeeecCC--ceEEEecCCeEEEEEecCC--ceeeEEeecCCCCCceEEEEcCC-CCEEEEEECCCcEEEEeCC
Q 019847 14 MEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENG--KVKKLLQVPGEDDYPTSVSWSHD-AKTLAVGYMDSKLQLWDAE 88 (335)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~ 88 (335)
.+...+.+++|+++ .+++++.|+.|++|++.+. .......+.+|...|.+++|+|+ +++|++++.||.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 35667899999884 4666778999999999872 11245567789999999999998 8999999999999999999
Q ss_pred Cce------eEe---eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC------CCCEEEEEee
Q 019847 89 TSK------LVR---NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH------SGEVCGLKWS 153 (335)
Q Consensus 89 ~~~------~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~------~~~i~~~~~~ 153 (335)
+++ ... .+..|...|.+++|+|..+.+|++++.||.|++||+++.+. ...+..+ ...|.+++|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE-VIHLSYTSPNSGIKQQLSVVEWH 223 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE-EEEECCCCCSSCCCCCEEEEEEC
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc-ceEEeccccccccCCceEEEEEC
Confidence 876 332 34678899999999994489999999999999999987654 4445544 7899999999
Q ss_pred cCC-CEEEEEeCCC---eEEEEEccCCCcccceeecc-CCCCCeeEEEecC-CCCcEEEEecCCCCCeEEEEECCCCceE
Q 019847 154 NEG-NLLASGGDDN---VVRIWERSKMSSSKSLHRFT-DHCGGVKALAWSP-HQVNVLATGGGREDGCIKIWNVQKGTCI 227 (335)
Q Consensus 154 ~~~-~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~~~~~~g~~d~~i~i~d~~~~~~~ 227 (335)
|++ .++++++.|+ .|++||++... ..+..+. +|...|.+++|+| ++. ++++++ .|+.|++||+++++.+
T Consensus 224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~--~dg~v~~wd~~~~~~~ 298 (416)
T 2pm9_A 224 PKNSTRVATATGSDNDPSILIWDLRNAN--TPLQTLNQGHQKGILSLDWCHQDEH-LLLSSG--RDNTVLLWNPESAEQL 298 (416)
T ss_dssp SSCTTEEEEEECCSSSCCCCEEETTSTT--SCSBCCCSCCSSCEEEEEECSSCSS-CEEEEE--SSSEEEEECSSSCCEE
T ss_pred CCCCCEEEEEECCCCCceEEEEeCCCCC--CCcEEeecCccCceeEEEeCCCCCC-eEEEEe--CCCCEEEeeCCCCccc
Confidence 986 6899999998 99999998742 3455666 7999999999999 664 555555 7999999999999999
Q ss_pred EEeec-CCcEeEEEeCCCC-ceeeeeeeeeeecCCCeEEEEECCCCceeecccC--------------------------
Q 019847 228 HGIDA-KAQICGLEWNRHH-KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS-------------------------- 279 (335)
Q Consensus 228 ~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-------------------------- 279 (335)
..+.. ...+.+++|+|++ ..++++ +.|+.|++||+.+.........
T Consensus 299 ~~~~~~~~~v~~~~~s~~~~~~l~s~------~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (416)
T 2pm9_A 299 SQFPARGNWCFKTKFAPEAPDLFACA------SFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPS 372 (416)
T ss_dssp EEEECSSSCCCCEEECTTCTTEEEEC------CSSSEEEEEESCCCCCSSCC----------------------CCSCCC
T ss_pred eeecCCCCceEEEEECCCCCCEEEEE------ecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccc
Confidence 88875 5679999999999 677776 7799999999987664433211
Q ss_pred ---------CCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 280 ---------SNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 280 ---------~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
|..++++++|+|+|++|++++.||.|++|++...
T Consensus 373 ~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 373 VFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp SSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 5667889999999999999999999999998864
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=301.78 Aligned_cols=268 Identities=8% Similarity=0.097 Sum_probs=210.8
Q ss_pred ecCCeEEEEEecCCceee--EEeecCCCCCceEEEEcCC------CCEEEEEECCCcEEEEeCCCcee-----------E
Q 019847 33 ALGPVLFLWKWENGKVKK--LLQVPGEDDYPTSVSWSHD------AKTLAVGYMDSKLQLWDAETSKL-----------V 93 (335)
Q Consensus 33 ~~~~~i~vw~~~~~~~~~--~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~iw~~~~~~~-----------~ 93 (335)
+.|+.|+||++++++... ...+.+|...|.+++|+|+ +.+||+++.||+|++||+.+++. .
T Consensus 180 s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~ 259 (524)
T 2j04_B 180 KHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPS 259 (524)
T ss_dssp --CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCS
T ss_pred CCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCce
Confidence 467899999998876432 2335567889999999996 57999999999999999987642 2
Q ss_pred eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEE--EeecCC-CEEEEEeCCCeEEE
Q 019847 94 RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGL--KWSNEG-NLLASGGDDNVVRI 170 (335)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~dg~i~i 170 (335)
..+.+|...|++++|++ + ..|++|+.||+|++||++++......+.+|...|.++ +|+|++ ++||+++.|++|++
T Consensus 260 ~~l~~h~~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 260 LTLSLADSLITTFDFLS-P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp EEECCTTTCEEEEEESS-S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred EEEEcCCCCEEEEEecC-C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 35678999999999997 4 4899999999999999987655566678999999999 578887 89999999999999
Q ss_pred EEccCCCcccceeeccCCC--CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee-cCCcEeEEEeCCCCce
Q 019847 171 WERSKMSSSKSLHRFTDHC--GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID-AKAQICGLEWNRHHKE 247 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 247 (335)
||+++.. ....+.+|. ..|.+++|+|++..+ ++++ .|++|++||++++.++..+. +...|.+++|+|+++.
T Consensus 338 WD~~~~~---~~~~~~~~~~~~~v~~v~fsp~~~~l-~s~~--~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~ 411 (524)
T 2j04_B 338 FNPKDIA---TTKTTVSRFRGSNLVPVVYCPQIYSY-IYSD--GASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPM 411 (524)
T ss_dssp ECGGGHH---HHCEEEEECSCCSCCCEEEETTTTEE-EEEC--SSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCB
T ss_pred EECCCCC---cccccccccccCcccceEeCCCcCeE-EEeC--CCCcEEEEECcccccceeeecCCCceEEEEeCCCCCe
Confidence 9988643 333344443 358899999998754 4544 79999999999998866665 4568999999999999
Q ss_pred eeeeeeeeeecCCCeEEEEECCC--------------------------------------------CceeecccCCCCc
Q 019847 248 ILSGHGFSASGDGNKLCLWKYPN--------------------------------------------MTKVGELQSSNSR 283 (335)
Q Consensus 248 ~~~~~~~~~~~~~~~i~i~d~~~--------------------------------------------~~~~~~~~~~~~~ 283 (335)
+++| +.|+.|++||+.. +..+..+.+|...
T Consensus 412 l~Sg------s~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~ 485 (524)
T 2j04_B 412 VLAG------SADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGIN 485 (524)
T ss_dssp CEEE------ETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCS
T ss_pred EEEE------ECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCce
Confidence 9887 6788888887421 1112234567888
Q ss_pred eeEeEEcCCCC---EEEEEeCCCcEEEEecCCCC
Q 019847 284 ILDLSQSPDGL---TVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 284 i~~~~~~~~~~---~l~~~~~dg~v~iw~~~~~~ 314 (335)
|.+++|+|+++ ++|+|+.||.|+||++....
T Consensus 486 V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 486 ITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp CCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred EEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 99999999964 99999999999999988653
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-41 Score=279.85 Aligned_cols=269 Identities=22% Similarity=0.308 Sum_probs=215.8
Q ss_pred eEEeecCCCCCceEEEE-----cC-CCCEEEEEECCCcEEEEeCCCc-------eeEeeecccccceeEeeecCCCCCEE
Q 019847 50 KLLQVPGEDDYPTSVSW-----SH-DAKTLAVGYMDSKLQLWDAETS-------KLVRNLEGHHRRVATSSWNHWNGHIL 116 (335)
Q Consensus 50 ~~~~~~~~~~~v~~~~~-----~~-~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l 116 (335)
....+.+|...|++++| ++ ++++|++|+.|++|++||+.+. .....+.+|...|.+++|+| ++.++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l 91 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFA 91 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS-STTEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC-CCCEE
Confidence 34467799999999999 77 8999999999999999998743 45677889999999999999 99999
Q ss_pred EEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEE
Q 019847 117 TSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALA 196 (335)
Q Consensus 117 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 196 (335)
++|+.|++|++||++++.. ...+.+|...|.+++|+|++++|++++.|+.|++||+... ..........|...|.+++
T Consensus 92 ~s~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTT-YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EEEETTSEEEEEETTSSCE-EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEE
T ss_pred EEEcCCCcEEEEECCCCcE-EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeee
Confidence 9999999999999997664 5667899999999999999999999999999999998732 1112222346888999999
Q ss_pred ecCCCC---------cEEEEecCCCCCeEEEEECCCCceEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEE
Q 019847 197 WSPHQV---------NVLATGGGREDGCIKIWNVQKGTCIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLW 266 (335)
Q Consensus 197 ~~~~~~---------~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 266 (335)
|+|++. .++++++ .|+.|++||. +.+....+. +...+.+++|+|++++++++ +.|+.|++|
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg------s~dg~v~iw 240 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVG--WDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATG------GKDKKLLIW 240 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEE--TTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEE------ETTCEEEEE
T ss_pred eccccccccccCCCCCEEEEEc--CCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEE------cCCCeEEEE
Confidence 999873 3566666 8999999994 456665665 45689999999999999988 779999999
Q ss_pred ECCCCc-eeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCC--Cc-----------cccccccccceec
Q 019847 267 KYPNMT-KVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDE--DS-----------VSHLAGLVSLKTS 332 (335)
Q Consensus 267 d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~--~~-----------~~~~~~i~~~~~~ 332 (335)
|+.+.. +...+ .+...|.+++|+|++++++++ .|+.|++|++...+... .. .+|...+.++.++
T Consensus 241 d~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 318 (343)
T 2xzm_R 241 DILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN 318 (343)
T ss_dssp ESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred ECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence 995443 33333 345579999999999877654 68889999998765433 11 1456667666654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=280.33 Aligned_cols=299 Identities=14% Similarity=0.206 Sum_probs=246.7
Q ss_pred cccceeeeecCC-ceEEE-ecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeE
Q 019847 16 DYYSKVIDWGRN-NVLAV-ALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV 93 (335)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~-~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 93 (335)
...+.+++|+++ +++++ ..++.+..|..... .......+|...|++++|+|++++|++++ ||.|++||+.+++..
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH--ARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK 85 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSE--EEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCc--cccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence 345778899885 44443 44566666654332 23334457999999999999999999998 999999999876543
Q ss_pred eee---c--ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe-eeEEeecCCCCEEEEEeecCCCEEEEEeCCCe
Q 019847 94 RNL---E--GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN-VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNV 167 (335)
Q Consensus 94 ~~~---~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 167 (335)
..+ . .|...|.+++|+| ++++|++++.||.|++||+++... ....+..|...+.+++|+|+++++++++.||.
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 164 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN 164 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eeeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCc
Confidence 332 2 6889999999999 999999999999999999987653 34567789999999999999999999999999
Q ss_pred EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCce
Q 019847 168 VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKE 247 (335)
Q Consensus 168 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (335)
|++||+++. +.+..+..|...+.+++|+|++..+++ ++ .|+.|++||+++++.+..+.....+.+++|+|+++.
T Consensus 165 v~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~--~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~ 238 (337)
T 1gxr_A 165 IAVWDLHNQ---TLVRQFQGHTDGASCIDISNDGTKLWT-GG--LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEW 238 (337)
T ss_dssp EEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEE-EE--TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSE
T ss_pred EEEEeCCCC---ceeeeeecccCceEEEEECCCCCEEEE-Ee--cCCcEEEEECCCCceEeeecCCCceEEEEECCCCCE
Confidence 999998763 456777789999999999999965555 44 799999999999999999998899999999999999
Q ss_pred eeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccc
Q 019847 248 ILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLV 327 (335)
Q Consensus 248 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~ 327 (335)
++++ +.++.|++||+.+++.. .+..|...|.+++|+|++++|++++.||.|++|++..++.. ....|...+.
T Consensus 239 l~~~------~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-~~~~~~~~v~ 310 (337)
T 1gxr_A 239 LAVG------MESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-FQSKESSSVL 310 (337)
T ss_dssp EEEE------ETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EEEECSSCEE
T ss_pred EEEE------cCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE-EEecCCCcEE
Confidence 9887 67999999999988764 56789999999999999999999999999999999987655 2345666676
Q ss_pred cceec
Q 019847 328 SLKTS 332 (335)
Q Consensus 328 ~~~~~ 332 (335)
++.++
T Consensus 311 ~~~~s 315 (337)
T 1gxr_A 311 SCDIS 315 (337)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 66553
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=289.50 Aligned_cols=297 Identities=16% Similarity=0.213 Sum_probs=235.4
Q ss_pred eeeeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec
Q 019847 20 KVIDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97 (335)
Q Consensus 20 ~~~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 97 (335)
+.++|++ ..+++++.|+.|++||+.+++.... +..| ..+....|+|++++|++|+.||.|++||+.+++....+.
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~--~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM--LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEETTTT--SCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccceeeE--EecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 3566766 5688888999999999987764332 2334 444555789999999999999999999999999998888
Q ss_pred ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCC
Q 019847 98 GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMS 177 (335)
Q Consensus 98 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 177 (335)
.|...|.+++|+| ++++|++++.|+.|++||+++++. ...+.+|...|.+++|+|++++|++++.||.|++||+++..
T Consensus 137 ~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 137 AHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp SSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCC-CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred cccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcC-ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 9999999999999 899999999999999999987665 55678899999999999999999999999999999988754
Q ss_pred cccceeeccCCC---------------------CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec--CC
Q 019847 178 SSKSLHRFTDHC---------------------GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA--KA 234 (335)
Q Consensus 178 ~~~~~~~~~~~~---------------------~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--~~ 234 (335)
....+.....+. ..+.+++|+|++.. +++++ .||.|++||+++++.+..+.. ..
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~ 291 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY-VIAGH--VSGVITVHNVFSKEQTIQLPSKFTC 291 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE-EEEEE--TTSCEEEEETTTCCEEEEECCTTSS
T ss_pred eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE-EEEEc--CCCeEEEEECCCCceeEEcccccCC
Confidence 332222222233 44455556788864 45554 799999999999988877753 46
Q ss_pred cEeEEEeCCCCc-eeeeeeeeeeecCCCeEEEEECCCCce-eecccC-CCCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 235 QICGLEWNRHHK-EILSGHGFSASGDGNKLCLWKYPNMTK-VGELQS-SNSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 235 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
.+.+++|+|++. +++++ +.||.|++||+++++. +..+.. |...|.++.+ +++++|++++.||.|++|++.
T Consensus 292 ~v~~~~~~~~~~~~l~~g------~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAG------YENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp CEEEEEECSSCTTEEEEE------ETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEEC
T ss_pred CceeEEEeCCCCCEEEEE------eCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEecc
Confidence 899999999999 77777 7799999999998754 666766 5667777754 578899999999999999998
Q ss_pred CCCCCC---------Ccccccccccccee
Q 019847 312 GPSGDE---------DSVSHLAGLVSLKT 331 (335)
Q Consensus 312 ~~~~~~---------~~~~~~~~i~~~~~ 331 (335)
.+.... ....|...+.++.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 393 (420)
T 3vl1_A 365 DPESERPAIEFETPTFLVSNDDAVSQFCY 393 (420)
T ss_dssp CTTCCSCEECTTSCEEECCSSCCCCEEEE
T ss_pred CCCCCccceeccCccEEccCCcceEEEEE
Confidence 853322 23345555555554
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=281.59 Aligned_cols=269 Identities=22% Similarity=0.414 Sum_probs=211.7
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc--eeEeee-cc-cccceeEeeecCCCCCEEEEeeCCCcEE
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS--KLVRNL-EG-HHRRVATSSWNHWNGHILTSGSKDKSII 126 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 126 (335)
...+.+|...|.+++|+|+ +|++|+.|+.|++||+.++ +....+ .. |...|.+++|+| ++++|++|+.|+.|+
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~ 83 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVS 83 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC-CCCEEEEEeCCCcEE
Confidence 4456799999999999988 9999999999999999875 445555 34 899999999999 999999999999999
Q ss_pred EEecccC------CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCC-CcccceeeccCCCCCeeEEEecC
Q 019847 127 NHDVRVS------NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKM-SSSKSLHRFTDHCGGVKALAWSP 199 (335)
Q Consensus 127 ~~d~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~ 199 (335)
+||++.. ......+.+|...|.+++|+|++++|++++.|+.|++||++.. ...+.+..+.+|...|.+++|+|
T Consensus 84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p 163 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP 163 (330)
T ss_dssp EEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS
T ss_pred EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC
Confidence 9998532 2345667899999999999999999999999999999998533 33455677889999999999999
Q ss_pred CCCcEEEEecCCCCCeEEEEECCCC--ceEEEeec-CCcEeEEEeCCC--CceeeeeeeeeeecCCCeEEEEECCCC---
Q 019847 200 HQVNVLATGGGREDGCIKIWNVQKG--TCIHGIDA-KAQICGLEWNRH--HKEILSGHGFSASGDGNKLCLWKYPNM--- 271 (335)
Q Consensus 200 ~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~i~d~~~~--- 271 (335)
++. ++++++ .|+.|++||..++ +++..+.. ...+.+++|+|+ +..++++ +.|+.|++||+..+
T Consensus 164 ~~~-~l~s~s--~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~------s~D~~v~iw~~~~~~~~ 234 (330)
T 2hes_X 164 SEA-LLASSS--YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSG------SDDSTVRVWKYMGDDED 234 (330)
T ss_dssp SSS-EEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEE------ETTSCEEEEEEEEECTT
T ss_pred CCC-EEEEEc--CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEE------eCCCeEEEEEecCCCcc
Confidence 986 555555 8999999998876 56666764 468999999999 5567766 78999999998754
Q ss_pred -----ceeecccC-CCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCC--C-CCcccccc-ccccceec
Q 019847 272 -----TKVGELQS-SNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSG--D-EDSVSHLA-GLVSLKTS 332 (335)
Q Consensus 272 -----~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~--~-~~~~~~~~-~i~~~~~~ 332 (335)
.....+.. |...|.+++|++++ +|++++.||.|++|+...++. . .....|.. .|.++.++
T Consensus 235 ~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~ 304 (330)
T 2hes_X 235 DQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWL 304 (330)
T ss_dssp SCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC
T ss_pred ccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEe
Confidence 33444554 88999999999765 899999999999999876531 1 11234554 56655543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-41 Score=274.64 Aligned_cols=248 Identities=20% Similarity=0.307 Sum_probs=216.2
Q ss_pred eEEeecCCCCCceEEEEcCCC-CEEEEEECCCcEEEEeCCC-----ceeEeeecccccceeEeeecCCCCCEEEEeeCCC
Q 019847 50 KLLQVPGEDDYPTSVSWSHDA-KTLAVGYMDSKLQLWDAET-----SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK 123 (335)
Q Consensus 50 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 123 (335)
....+.+|...|++++|+|++ ++|++|+.|++|++|++.. +..+..+.+|...|.+++|+| ++.+|++|+.|+
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~ 87 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA-DGAYALSASWDK 87 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECC-CCCEEEEEeCCC
Confidence 345678999999999999965 8999999999999999864 345678899999999999999 999999999999
Q ss_pred cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCC-
Q 019847 124 SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQV- 202 (335)
Q Consensus 124 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 202 (335)
+|++||+++++. ...+.+|...|.+++|+|++++|++++.|+.|++||++. ..+..+.+|...|.++.|.|...
T Consensus 88 ~v~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~----~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 88 TLRLWDVATGET-YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG----QCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp EEEEEETTTTEE-EEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS----CEEEEECCCSSCEEEEEECCC---
T ss_pred EEEEEECCCCCe-eEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CeEEEEeccCCcEEEEEEccCCCC
Confidence 999999986654 666889999999999999999999999999999999863 45677788999999999999643
Q ss_pred ----cEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecc
Q 019847 203 ----NVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL 277 (335)
Q Consensus 203 ----~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 277 (335)
.++++++ .|+.|++||+++++....+.. ...+.+++|+|++++++++ +.|+.|++||+.+++.+..+
T Consensus 163 ~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~------~~dg~i~iwd~~~~~~~~~~ 234 (319)
T 3frx_A 163 DDDSVTIISAG--NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA------GKDGEIMLWNLAAKKAMYTL 234 (319)
T ss_dssp ---CCEEEEEE--TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEE------ETTCEEEEEETTTTEEEEEE
T ss_pred CCCccEEEEEe--CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEE------eCCCeEEEEECCCCcEEEEe
Confidence 3566666 899999999999988877764 5689999999999999988 78999999999999998888
Q ss_pred cCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 278 QSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 278 ~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
..+ ..|.+++|+|++.+|++++.+ .+++|++...
T Consensus 235 ~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 235 SAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp ECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred cCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 765 579999999999999988765 5999998764
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=284.78 Aligned_cols=251 Identities=21% Similarity=0.361 Sum_probs=206.3
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce--eEeeecccccceeEeeecCC-CCCEEEEeeCCCcEEEEec
Q 019847 54 VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK--LVRNLEGHHRRVATSSWNHW-NGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~ 130 (335)
+.+|...|++++|+|+|++||+|+.|++|++||+.+++ .+..+.+|...|.+++|+++ ++++|++|+.|++|++||+
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence 46899999999999999999999999999999998764 46778899999999999863 4899999999999999999
Q ss_pred ccCC-eeeEEeecCCCCEEEEEeecC--CCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCC------
Q 019847 131 RVSN-NVTSCIKAHSGEVCGLKWSNE--GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQ------ 201 (335)
Q Consensus 131 ~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------ 201 (335)
+++. .....+.+|...|.+++|+|+ +.+|++++.|+.|++||++..........+.+|...+.+++|+|+.
T Consensus 89 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 168 (316)
T 3bg1_A 89 ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLI 168 (316)
T ss_dssp SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC----
T ss_pred CCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccc
Confidence 8654 334567789999999999997 7899999999999999998653333345667899999999999973
Q ss_pred ----------CcEEEEecCCCCCeEEEEECCCC---ceEEEeec-CCcEeEEEeCCCC----ceeeeeeeeeeecCCCeE
Q 019847 202 ----------VNVLATGGGREDGCIKIWNVQKG---TCIHGIDA-KAQICGLEWNRHH----KEILSGHGFSASGDGNKL 263 (335)
Q Consensus 202 ----------~~~~~~~~g~~d~~i~i~d~~~~---~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i 263 (335)
..++++++ .|+.|++||++.. +++..+.. ...|.+++|+|++ ..++++ +.|+.|
T Consensus 169 ~~~~~~~~~~~~~l~sgs--~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~------s~D~~v 240 (316)
T 3bg1_A 169 DHPSGQKPNYIKRFASGG--CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASC------SQDGRV 240 (316)
T ss_dssp --CCSCCCCCCCBEECCB--TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEE------ETTCEE
T ss_pred ccccccCccccceEEEec--CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEE------cCCCeE
Confidence 14666666 8999999999765 34555554 4579999999987 667766 789999
Q ss_pred EEEECCCCc----eeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 264 CLWKYPNMT----KVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 264 ~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
++|++.+.. ....+..|...|.+++|+|++++|++++.||.|++|+...
T Consensus 241 ~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 241 FIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 999987631 2234567888999999999999999999999999999864
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=283.95 Aligned_cols=287 Identities=11% Similarity=0.198 Sum_probs=227.4
Q ss_pred CCcccccceeeeecCC--ceEEEecCCeEEEEEecCCce---------eeEEeecCCC------------CCceEEEEcC
Q 019847 12 YLMEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKV---------KKLLQVPGED------------DYPTSVSWSH 68 (335)
Q Consensus 12 ~~~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~---------~~~~~~~~~~------------~~v~~~~~~~ 68 (335)
.+.+...+.+++|+++ .+++++.||.|++|++.+++. .....+.+|. ..|.+++|+|
T Consensus 24 ~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 24 DVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred cccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 4556778999999984 466677899999999987652 2244566898 8899999999
Q ss_pred CC--CEEEEEECCCcEEEEeCCCceeE---------------------------------------ee-ecccccceeEe
Q 019847 69 DA--KTLAVGYMDSKLQLWDAETSKLV---------------------------------------RN-LEGHHRRVATS 106 (335)
Q Consensus 69 ~~--~~l~~~~~dg~i~iw~~~~~~~~---------------------------------------~~-~~~~~~~v~~~ 106 (335)
++ .+|++++.||.|++||+.+++.. .. ..+|...|.++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 98 79999999999999998765432 12 35799999999
Q ss_pred eecCCCCCEEEEeeCCCcEEEEecccCCeeeE-------EeecCCCCEEEEEeecCC-CEEEEEeCCCeEEEEEccCCCc
Q 019847 107 SWNHWNGHILTSGSKDKSIINHDVRVSNNVTS-------CIKAHSGEVCGLKWSNEG-NLLASGGDDNVVRIWERSKMSS 178 (335)
Q Consensus 107 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 178 (335)
+|+| ++++|++| .|+.|++||++....... .+.+|...|.+++|+|++ ++|++++.||.|++||++....
T Consensus 184 ~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 184 SINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp EECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred EEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 9999 99999998 799999999985444343 255799999999999998 9999999999999999987542
Q ss_pred -ccceeeccCCCC------------CeeEEEecCCCCcEEEEecCCCCCeEEEEECCC-CceEEEeecCCcE--------
Q 019847 179 -SKSLHRFTDHCG------------GVKALAWSPHQVNVLATGGGREDGCIKIWNVQK-GTCIHGIDAKAQI-------- 236 (335)
Q Consensus 179 -~~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~~-------- 236 (335)
......+..|.. .|.+++|+|++.. +++++ . +.|++||+++ ++++..+..+..+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-MMTRD--Y-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLY 337 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-EEEEE--S-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCCCCE-EEEee--C-CeEEEEeCCCCccccceeeccccccccccccc
Confidence 122566666765 8999999999864 55554 5 9999999997 8888888766543
Q ss_pred --------eEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecc-------------------------------
Q 019847 237 --------CGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL------------------------------- 277 (335)
Q Consensus 237 --------~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~------------------------------- 277 (335)
..++|+|++++++++ +.|+.|++||+.+++.+...
T Consensus 338 ~~~~i~~~~~~~~s~~~~~l~s~------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (447)
T 3dw8_B 338 ENDCIFDKFECCWNGSDSVVMTG------SYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVD 411 (447)
T ss_dssp HTSGGGCCCCEEECTTSSEEEEE------CSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGG
T ss_pred cccccccceEEEECCCCCEEEEe------ccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccccc
Confidence 339999999999887 78999999999988765310
Q ss_pred -cCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 278 -QSSNSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 278 -~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
..+...|..++|+|++.+||+++.++ +++|.-.
T Consensus 412 ~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 412 SLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp GCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred ccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 12345688999999999999998875 7777643
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=284.66 Aligned_cols=276 Identities=18% Similarity=0.430 Sum_probs=233.9
Q ss_pred cccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee
Q 019847 16 DYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN 95 (335)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 95 (335)
...+.+++++++.+++++.|+.|++||+.+++.. ..+.+|...|.+++| ++++|++|+.||.|++||+.+++.+..
T Consensus 133 ~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~ 208 (435)
T 1p22_A 133 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECK--RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT 208 (435)
T ss_dssp CCCEEEEECCSSEEEEEESSSCEEEEESSSCCEE--EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred CCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEE--EEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 3457889998889999999999999999998864 456689999999998 788999999999999999999999999
Q ss_pred ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee--eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV--TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
+..|...|.+++|+ ++.+++|+.||.|++||+++.... ...+.+|...|.+++| +++++++|+.||.|++||+
T Consensus 209 ~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~ 283 (435)
T 1p22_A 209 LIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNT 283 (435)
T ss_dssp ECCCCSCEEEEECC---TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET
T ss_pred EcCCCCcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEEC
Confidence 99999999999995 469999999999999999876643 2567789999999999 6789999999999999998
Q ss_pred cCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeee
Q 019847 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGH 252 (335)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 252 (335)
++. +.+..+.+|...|.++.++ + .++++++ .||.|++||+++++++..+.. ...+.+++| ++..++++
T Consensus 284 ~~~---~~~~~~~~~~~~v~~~~~~--~-~~l~~g~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg- 352 (435)
T 1p22_A 284 STC---EFVRTLNGHKRGIACLQYR--D-RLVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG- 352 (435)
T ss_dssp TTC---CEEEEEECCSSCEEEEEEE--T-TEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE-
T ss_pred CcC---cEEEEEcCCCCcEEEEEeC--C-CEEEEEe--CCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE-
Confidence 764 4577778899999999995 3 3566665 899999999999999998875 457999998 67777777
Q ss_pred eeeeecCCCeEEEEECCCCc---------eeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 253 GFSASGDGNKLCLWKYPNMT---------KVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 253 ~~~~~~~~~~i~i~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
+.||.|++||+.+++ .+..+.+|.+.|++++| ++.+|++++.||.|++||+........
T Consensus 353 -----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 353 -----AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQA 420 (435)
T ss_dssp -----ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---------
T ss_pred -----eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCccc
Confidence 779999999997665 77888999999999999 778999999999999999988765443
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=289.06 Aligned_cols=279 Identities=14% Similarity=0.220 Sum_probs=223.1
Q ss_pred ccccceeeeecC-C--ceEEEecCCeEEEEEecC---Ccee-eEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeC
Q 019847 15 EDYYSKVIDWGR-N--NVLAVALGPVLFLWKWEN---GKVK-KLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDA 87 (335)
Q Consensus 15 ~~~~~~~~~~~~-~--~~~~~~~~~~i~vw~~~~---~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 87 (335)
+...+.+++|++ + .+++++.|+.|++||+.+ +... ....+ +|...|.+++|+|++++|++|+.||.|++||+
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~ 140 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKV 140 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEe
Confidence 456789999998 4 577788999999999977 4422 12333 48999999999999999999999999999999
Q ss_pred C---CceeEeeecc------------cccceeEee--ecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeec--CCCCEE
Q 019847 88 E---TSKLVRNLEG------------HHRRVATSS--WNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA--HSGEVC 148 (335)
Q Consensus 88 ~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~~i~ 148 (335)
+ +++....+.. +...+.++. +++ ++.+|++++.|+.|++||+++... ...+.. |...|+
T Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~h~~~v~ 218 (437)
T 3gre_A 141 NHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLER-LQIIENSPRHGAVS 218 (437)
T ss_dssp EEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCE-EEEEECCGGGCCEE
T ss_pred ccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCee-eEEEccCCCCCceE
Confidence 5 5544443332 334555555 445 789999999999999999987665 445555 889999
Q ss_pred EEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeecc-CCCCCeeEEEecC----CCCcEEEEecCCCCCeEEEEECCC
Q 019847 149 GLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFT-DHCGGVKALAWSP----HQVNVLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 149 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~----~~~~~~~~~~g~~d~~i~i~d~~~ 223 (335)
+++|+|++++|++|+.||.|++||++. .+.+..+. .|..+|.+++|+| ++ .++++++ .|+.|++||+++
T Consensus 219 ~~~~s~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~s~~~-~~l~s~~--~dg~i~iwd~~~ 292 (437)
T 3gre_A 219 SICIDEECCVLILGTTRGIIDIWDIRF---NVLIRSWSFGDHAPITHVEVCQFYGKNS-VIVVGGS--SKTFLTIWNFVK 292 (437)
T ss_dssp EEEECTTSCEEEEEETTSCEEEEETTT---TEEEEEEBCTTCEEEEEEEECTTTCTTE-EEEEEES--TTEEEEEEETTT
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCC---ccEEEEEecCCCCceEEEEeccccCCCc-cEEEEEc--CCCcEEEEEcCC
Confidence 999999999999999999999999886 34455554 6778999997765 44 4666666 899999999999
Q ss_pred CceEEEeecC---------------------------CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeec
Q 019847 224 GTCIHGIDAK---------------------------AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE 276 (335)
Q Consensus 224 ~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 276 (335)
++.+..+..+ ..+.+++|+ ++++++++ +.|+.|++||+.+++....
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~------~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 293 GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTD------EATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEE------GGGTEEEEEETTCGGGCEE
T ss_pred CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEec------CCCCeEEEEECCCcccceE
Confidence 9988877632 246777777 66777766 7899999999999887766
Q ss_pred ccC-------------------------------------CCCceeEeEEcCC--CCEEEEEeCCCcEEEEe
Q 019847 277 LQS-------------------------------------SNSRILDLSQSPD--GLTVATAGADETIRFWE 309 (335)
Q Consensus 277 ~~~-------------------------------------~~~~i~~~~~~~~--~~~l~~~~~dg~v~iw~ 309 (335)
+.+ |...|++++|+++ +.+|++|+.||.|++|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 366 VISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 654 7889999999998 78999999999999995
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-40 Score=280.09 Aligned_cols=276 Identities=13% Similarity=0.158 Sum_probs=224.0
Q ss_pred eecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccc
Q 019847 23 DWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH 100 (335)
Q Consensus 23 ~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 100 (335)
.|++ +.+++++.|+.|++||+++++.. ..+.+|...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|.
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 181 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSNFNLQR--EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHR 181 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTTSCEEE--EETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCS
T ss_pred EEecCCCEEEEEECCCCEEEEeCCCccee--eecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCC
Confidence 4444 46777889999999999988753 3456899999999999999999999999999999999999999999999
Q ss_pred cceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeec---CCCCEEE---------------------EEeecCC
Q 019847 101 RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA---HSGEVCG---------------------LKWSNEG 156 (335)
Q Consensus 101 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~~i~~---------------------~~~~~~~ 156 (335)
..|.+++|+| ++++|++++.||.|++||+++++. ...+.. +...+.+ ++|+|++
T Consensus 182 ~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 259 (420)
T 3vl1_A 182 ATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTT-IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG 259 (420)
T ss_dssp SCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEE-EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT
T ss_pred CcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCce-eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC
Confidence 9999999999 999999999999999999986654 344442 3344444 4557889
Q ss_pred CEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce-EEEeec--C
Q 019847 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC-IHGIDA--K 233 (335)
Q Consensus 157 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~--~ 233 (335)
++|++++.||.|++||++.... .......|...|.+++|+|++..++++++ .||.|++||+++++. +..+.. .
T Consensus 260 ~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~ 335 (420)
T 3vl1_A 260 KYVIAGHVSGVITVHNVFSKEQ--TIQLPSKFTCSCNSLTVDGNNANYIYAGY--ENGMLAQWDLRSPECPVGEFLINEG 335 (420)
T ss_dssp EEEEEEETTSCEEEEETTTCCE--EEEECCTTSSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEEESTT
T ss_pred CEEEEEcCCCeEEEEECCCCce--eEEcccccCCCceeEEEeCCCCCEEEEEe--CCCeEEEEEcCCCcCchhhhhccCC
Confidence 9999999999999999987532 22333457889999999999986777776 899999999998754 556653 4
Q ss_pred CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce---------eecccCCCCceeEeEEcCCCC---EEEEEeC
Q 019847 234 AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK---------VGELQSSNSRILDLSQSPDGL---TVATAGA 301 (335)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~---------~~~~~~~~~~i~~~~~~~~~~---~l~~~~~ 301 (335)
..+.++.+ +++.+++++ +.|+.|++|++..... ...+..|...|.+++|+|++. .|++.+.
T Consensus 336 ~~v~~~~~-~~~~~l~s~------~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~ 408 (420)
T 3vl1_A 336 TPINNVYF-AAGALFVSS------GFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK 408 (420)
T ss_dssp SCEEEEEE-ETTEEEEEE------TTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEET
T ss_pred CCceEEEe-CCCCEEEEe------cCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcC
Confidence 56777754 577777776 7899999999877322 223456788999999999999 7888888
Q ss_pred CCcEEEEecCCC
Q 019847 302 DETIRFWEAFGP 313 (335)
Q Consensus 302 dg~v~iw~~~~~ 313 (335)
+|.+.+|++.++
T Consensus 409 ~g~~~~~~~~~~ 420 (420)
T 3vl1_A 409 NNFCALYNLSNP 420 (420)
T ss_dssp TTEEEEEESCC-
T ss_pred CceEEEEeccCC
Confidence 999999998763
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=296.78 Aligned_cols=309 Identities=17% Similarity=0.252 Sum_probs=261.7
Q ss_pred cccccccCCCCcccccceeeeecCC-ceEEEecCCeEEEEEecCC----ceeeEEeecCCCCC-ceEEEEcC--CCCEEE
Q 019847 3 REARILDAPYLMEDYYSKVIDWGRN-NVLAVALGPVLFLWKWENG----KVKKLLQVPGEDDY-PTSVSWSH--DAKTLA 74 (335)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~----~~~~~~~~~~~~~~-v~~~~~~~--~~~~l~ 74 (335)
+....+......+...+.+++|+++ .+++++.++.|++||++++ +. ...+.+|... |++++|+| ++++|+
T Consensus 5 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~--~~~~~~h~~~~v~~~~~sp~~~~~~l~ 82 (615)
T 1pgu_A 5 SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPP--VVQFTGHGSSVVTTVKFSPIKGSQYLC 82 (615)
T ss_dssp EEEEEECCCCCCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCS--EEEECTTTTSCEEEEEECSSTTCCEEE
T ss_pred chhhccCCCCCCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCcccc--ceEEecCCCceEEEEEECcCCCCCEEE
Confidence 3445555555567788999999995 5677777999999999987 54 4566799999 99999999 999999
Q ss_pred EEECCCcEEEEeCCCc--------eeEeeecccccceeEeeecCCCCCEEEEeeCC----CcEEEEecccCCeeeEEeec
Q 019847 75 VGYMDSKLQLWDAETS--------KLVRNLEGHHRRVATSSWNHWNGHILTSGSKD----KSIINHDVRVSNNVTSCIKA 142 (335)
Q Consensus 75 ~~~~dg~i~iw~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~ 142 (335)
+|+.||.|++||+.++ +....+..|...|.+++|+| ++++|++++.+ +.|++||. +. ....+.+
T Consensus 83 s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d~--~~-~~~~~~~ 158 (615)
T 1pgu_A 83 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDS--GN-SLGEVSG 158 (615)
T ss_dssp EEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTT--CC-EEEECCS
T ss_pred EecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC-CCCEEEEeccCCCCccEEEEEEC--CC-cceeeec
Confidence 9999999999999754 67778888999999999999 99999999988 78999983 33 4666788
Q ss_pred CCCCEEEEEeecCCC-EEEEEeCCCeEEEEEccCCCcccceeeccCCCC---CeeEEEecCC-CCcEEEEecCCCCCeEE
Q 019847 143 HSGEVCGLKWSNEGN-LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCG---GVKALAWSPH-QVNVLATGGGREDGCIK 217 (335)
Q Consensus 143 ~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~~~~~~~g~~d~~i~ 217 (335)
|...|.+++|+|+++ .+++++.|+.|++||++. .+.+..+..|.. .|.+++|+|+ +. ++++++ .|+.|+
T Consensus 159 ~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~--~dg~i~ 232 (615)
T 1pgu_A 159 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP---FKFSASDRTHHKQGSFVRDVEFSPDSGE-FVITVG--SDRKIS 232 (615)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT---BEEEEEECSSSCTTCCEEEEEECSTTCC-EEEEEE--TTCCEE
T ss_pred CCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC---cceeeeecccCCCCceEEEEEECCCCCC-EEEEEe--CCCeEE
Confidence 999999999999987 899999999999999765 455777788888 9999999999 75 555554 799999
Q ss_pred EEECCCCceEEEe-----ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC----CCceeEeE
Q 019847 218 IWNVQKGTCIHGI-----DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS----NSRILDLS 288 (335)
Q Consensus 218 i~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~----~~~i~~~~ 288 (335)
+||+++++.+..+ .+...+.+++|+ ++..++++ +.|+.|++||+.+++.+..+..+ ...+.++.
T Consensus 233 vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~------~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (615)
T 1pgu_A 233 CFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATV------GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV 305 (615)
T ss_dssp EEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEE------ETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEE
T ss_pred EEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEE------cCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEE
Confidence 9999999999998 566789999999 99988887 67999999999999998888776 35678888
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCCCCCCcccccccccccee
Q 019847 289 QSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 289 ~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~ 331 (335)
|+ ++.++++++.||.|++||+...+.......|...|.++.+
T Consensus 306 ~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 347 (615)
T 1pgu_A 306 AT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV 347 (615)
T ss_dssp EE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET
T ss_pred eC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe
Confidence 86 8889999999999999999987666666677777776654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-40 Score=315.02 Aligned_cols=310 Identities=18% Similarity=0.298 Sum_probs=257.1
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
+...+.+++|+++ .+++++.|+.|++||+.+++.. ..+.+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~ 691 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL--LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL 691 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEE--EEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce
Confidence 4567889999984 5666788999999999998864 45669999999999999999999999999999999999999
Q ss_pred EeeecccccceeEeeecCC-CCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHW-NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
+..+..|...|.+++|+|. +..++++|+.|+.|++||++++.. ...+.+|...|.+++|+|++++|++++.||.|++|
T Consensus 692 ~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vw 770 (1249)
T 3sfz_A 692 VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770 (1249)
T ss_dssp EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEE
T ss_pred EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEE
Confidence 9999999999999999984 345899999999999999997664 56678899999999999999999999999999999
Q ss_pred EccCCCcccce---------------------------------------------------e-eccCCCCCeeEEEecC
Q 019847 172 ERSKMSSSKSL---------------------------------------------------H-RFTDHCGGVKALAWSP 199 (335)
Q Consensus 172 d~~~~~~~~~~---------------------------------------------------~-~~~~~~~~v~~~~~~~ 199 (335)
|++.......+ . ...+|...+.+++|+|
T Consensus 771 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp 850 (1249)
T 3sfz_A 771 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP 850 (1249)
T ss_dssp EGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS
T ss_pred eCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC
Confidence 98754221111 0 1126778899999999
Q ss_pred CCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeee-------------------------
Q 019847 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHG------------------------- 253 (335)
Q Consensus 200 ~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------------------- 253 (335)
++..++ +++ .|+.|++||+.++..+..+..+ ..+.+++|+|++..++++..
T Consensus 851 ~~~~l~-~~~--~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~ 927 (1249)
T 3sfz_A 851 YDHLAV-IAL--SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID 927 (1249)
T ss_dssp STTEEE-EEC--SSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEE
T ss_pred CCCEEE-EEe--CCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceee
Confidence 996544 444 7999999999999888887654 57899999999888776621
Q ss_pred ------------------------------------------------eeeecCCCeEEEEECCCCceeecccCCCCcee
Q 019847 254 ------------------------------------------------FSASGDGNKLCLWKYPNMTKVGELQSSNSRIL 285 (335)
Q Consensus 254 ------------------------------------------------~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~ 285 (335)
+++++.+|.|++||+.+++....+.+|...|+
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~ 1007 (1249)
T 3sfz_A 928 VVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVR 1007 (1249)
T ss_dssp EEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCC
T ss_pred EEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceE
Confidence 23456677778888888888888889999999
Q ss_pred EeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcccccccccccee
Q 019847 286 DLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 286 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~ 331 (335)
+++|+|++++|++++.||.|++|++..+.... ...|...+.++.+
T Consensus 1008 ~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~ 1052 (1249)
T 3sfz_A 1008 HIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRL 1052 (1249)
T ss_dssp CEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEE
T ss_pred EEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEE
Confidence 99999999999999999999999998875543 4466666666554
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=277.02 Aligned_cols=292 Identities=15% Similarity=0.221 Sum_probs=231.6
Q ss_pred ccccceeeeecC-C--ceEEEecCCeEEEEEecCCceeeEEee-----------cCCCCCceEEEEcC-CCCEEEEEECC
Q 019847 15 EDYYSKVIDWGR-N--NVLAVALGPVLFLWKWENGKVKKLLQV-----------PGEDDYPTSVSWSH-DAKTLAVGYMD 79 (335)
Q Consensus 15 ~~~~~~~~~~~~-~--~~~~~~~~~~i~vw~~~~~~~~~~~~~-----------~~~~~~v~~~~~~~-~~~~l~~~~~d 79 (335)
+...+.+++|++ + .+++++.||.|++||+++++....... .+|...|.+++|+| ++++|++++.|
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 567889999987 3 577778899999999998765444332 25999999999999 78899999999
Q ss_pred CcEEEEeCCCceeEeeecccccceeEeeecCC--CCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCC
Q 019847 80 SKLQLWDAETSKLVRNLEGHHRRVATSSWNHW--NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157 (335)
Q Consensus 80 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (335)
|.|++||+.+++....+. +...+.++.|++. ++.++++++.+|.|++||++++.. ...+..|...|.+++|+|+++
T Consensus 122 ~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~ 199 (408)
T 4a11_B 122 KTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQEILAVSWSPRYD 199 (408)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEECCCCSCEEEEEECSSCT
T ss_pred CeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeeecCCCCcEEEEEECCCCC
Confidence 999999999999888876 7788999999883 334999999999999999986654 566788999999999999988
Q ss_pred -EEEEEeCCCeEEEEEccCCCccc-------------ceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC
Q 019847 158 -LLASGGDDNVVRIWERSKMSSSK-------------SLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 158 -~l~~~~~dg~i~iwd~~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 223 (335)
+|++++.||.|++||++...... .......|...|.+++|+|++..+++.+ .|+.|++||+++
T Consensus 200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~~ 276 (408)
T 4a11_B 200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG---TDNRMRLWNSSN 276 (408)
T ss_dssp TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTT
T ss_pred cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec---CCCeEEEEECCC
Confidence 58999999999999998653111 1122256889999999999987555544 799999999999
Q ss_pred CceEEEeecC------CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEE
Q 019847 224 GTCIHGIDAK------AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVA 297 (335)
Q Consensus 224 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 297 (335)
++........ ...........+..++.+ +.++.|++||+.+++++..+.+|...|++++|+|++++|+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 350 (408)
T 4a11_B 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV------PYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELY 350 (408)
T ss_dssp CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEE------EETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred CccceeccccccccccccceeEEecCCCceEEEE------ecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEE
Confidence 8765444321 112222222233333333 5589999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEecCCCCCCC
Q 019847 298 TAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 298 ~~~~dg~v~iw~~~~~~~~~ 317 (335)
+++.||.|++|++...+...
T Consensus 351 s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 351 SGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp EEETTSCEEEEEECC-----
T ss_pred EECCCCeEEEEeCCCCCccC
Confidence 99999999999999876554
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=277.12 Aligned_cols=287 Identities=21% Similarity=0.371 Sum_probs=244.7
Q ss_pred cceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec
Q 019847 18 YSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97 (335)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 97 (335)
.+.+++++++.+++++.|+.|++||+.+++.. ..+.+|...|.+++|+ ++++++|+.||.|++||+.+++.+..+.
T Consensus 121 v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 196 (445)
T 2ovr_B 121 VITCLQFCGNRIVSGSDDNTLKVWSAVTGKCL--RTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLY 196 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTCCEE--EECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred cEEEEEEcCCEEEEEECCCcEEEEECCCCcEE--EEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEEC
Confidence 45789999889999999999999999998864 4567999999999997 6699999999999999999999999999
Q ss_pred ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCC
Q 019847 98 GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMS 177 (335)
Q Consensus 98 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 177 (335)
+|...|.++.|+ ++.+++|+.||.|++||+++++. ...+.+|...|.+++| +++++++++.||.|++||+++.
T Consensus 197 ~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~- 269 (445)
T 2ovr_B 197 GHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQC-LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE- 269 (445)
T ss_dssp CCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCE-EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT-
T ss_pred CCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcE-EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC-
Confidence 999999999994 57899999999999999987654 5667889999999998 6789999999999999998763
Q ss_pred cccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeee
Q 019847 178 SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSA 256 (335)
Q Consensus 178 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 256 (335)
+.+..+.+|...|.++.| ++. .+++++ .|+.|++||+++++.+..+..+ ..+.++.+ ++..++++
T Consensus 270 --~~~~~~~~~~~~v~~~~~--~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~----- 335 (445)
T 2ovr_B 270 --TCLHTLQGHTNRVYSLQF--DGI-HVVSGS--LDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSG----- 335 (445)
T ss_dssp --EEEEEECCCSSCEEEEEE--CSS-EEEEEE--TTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEE-----
T ss_pred --cEeEEecCCCCceEEEEE--CCC-EEEEEe--CCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEE-----
Confidence 557777889999999999 454 455555 7999999999999999888754 45666666 45677766
Q ss_pred ecCCCeEEEEECCCCceeecccC---CCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc-----ccccccccc
Q 019847 257 SGDGNKLCLWKYPNMTKVGELQS---SNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS-----VSHLAGLVS 328 (335)
Q Consensus 257 ~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-----~~~~~~i~~ 328 (335)
+.|+.|++||+++++.+..+.. |...|++++|+ +++|++|+.||.|++||+..++..... ..|...|.+
T Consensus 336 -~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 412 (445)
T 2ovr_B 336 -NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 412 (445)
T ss_dssp -ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEE
T ss_pred -eCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEE
Confidence 7799999999999999988876 88899999996 569999999999999999988765544 356667777
Q ss_pred ceec
Q 019847 329 LKTS 332 (335)
Q Consensus 329 ~~~~ 332 (335)
+.++
T Consensus 413 ~~~s 416 (445)
T 2ovr_B 413 IRAS 416 (445)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7664
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=282.74 Aligned_cols=285 Identities=16% Similarity=0.272 Sum_probs=230.5
Q ss_pred cccceeeeecCCceEE---EecCCeEEEEEecCCce--eeEEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCC
Q 019847 16 DYYSKVIDWGRNNVLA---VALGPVLFLWKWENGKV--KKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAET 89 (335)
Q Consensus 16 ~~~~~~~~~~~~~~~~---~~~~~~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~ 89 (335)
......++++++.... ++.+|.|+||+++.... .....+.+|...|++++|+| ++++|++|+.||.|++||+.+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 34 TWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp CCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred ccCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 3455668888875433 46799999999865432 12334678999999999999 999999999999999999998
Q ss_pred c-------eeEeeecccccceeEeeecCCCC-CEEEEeeCCCcEEEEecccCCeeeEEe--ecCCCCEEEEEeecCCCEE
Q 019847 90 S-------KLVRNLEGHHRRVATSSWNHWNG-HILTSGSKDKSIINHDVRVSNNVTSCI--KAHSGEVCGLKWSNEGNLL 159 (335)
Q Consensus 90 ~-------~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l 159 (335)
+ +.+..+.+|...|.+++|+| ++ ++|++++.||.|++||+++++. ...+ ..|...|.+++|+|++++|
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTGAA-VLTLGPDVHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETTSCEEEEETTTTEE-EEEECTTTCCSCEEEEEECTTSSCE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCCCc-cEEEecCCCCCceEEEEECCCCCEE
Confidence 7 56778889999999999999 65 7999999999999999997654 4555 7899999999999999999
Q ss_pred EEEeCCCeEEEEEccCCCcccceeec-cCCCCC-eeEEEecCCCCcEEEEe-cCCCCCeEEEEECCCCce---EEEeecC
Q 019847 160 ASGGDDNVVRIWERSKMSSSKSLHRF-TDHCGG-VKALAWSPHQVNVLATG-GGREDGCIKIWNVQKGTC---IHGIDAK 233 (335)
Q Consensus 160 ~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~~~~~-~g~~d~~i~i~d~~~~~~---~~~~~~~ 233 (335)
++++.||.|++||+++. +.+..+ ..|.+. +.++.|+|++. +++++ ++..|+.|++||+++++. ...+.+.
T Consensus 192 ~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 267 (402)
T 2aq5_A 192 CTSCRDKRVRVIEPRKG---TVVAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTS 267 (402)
T ss_dssp EEEETTSEEEEEETTTT---EEEEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCC
T ss_pred EEEecCCcEEEEeCCCC---ceeeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCC
Confidence 99999999999998874 345555 567665 89999999985 55555 112799999999998764 3334456
Q ss_pred CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce-eecccC--CCCceeEeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 234 AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK-VGELQS--SNSRILDLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
..+.+++|+|+++.++++ ++.|+.|++||+.++++ +..+.. |...|.+++|+|++.++++ .++.+++|++
T Consensus 268 ~~v~~~~~s~~~~~l~~~-----g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l 340 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLC-----GKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKL 340 (402)
T ss_dssp SSCEEEEEETTTTEEEEE-----ETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEE
T ss_pred CceeEEEEcCCCCEEEEE-----EcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEc
Confidence 789999999999988643 25799999999998874 444433 5588999999999988764 5679999999
Q ss_pred CCC
Q 019847 311 FGP 313 (335)
Q Consensus 311 ~~~ 313 (335)
...
T Consensus 341 ~~~ 343 (402)
T 2aq5_A 341 HER 343 (402)
T ss_dssp ETT
T ss_pred CCC
Confidence 864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=298.26 Aligned_cols=286 Identities=17% Similarity=0.265 Sum_probs=247.9
Q ss_pred cccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 14 MEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
.+...+.+++|+++ .+++++.+|.|++||+++++... .+.+|...|.+++|+|++++|++|+.||.|++||+.+++
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 88 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR--SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE 88 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE--EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 35567899999985 46667789999999999987654 455899999999999999999999999999999999999
Q ss_pred eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEE
Q 019847 92 LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRI 170 (335)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i 170 (335)
.+..+..|...|++++|+| ++..|++++.||.|++||++++......+.+|...|.+++|+| +++.|++++.||.|++
T Consensus 89 ~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~v 167 (814)
T 3mkq_A 89 KVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167 (814)
T ss_dssp EEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred EEEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 9999999999999999999 9999999999999999999987677788889999999999999 8899999999999999
Q ss_pred EEccCCCcccceeecc-CCCCCeeEEEecC--CCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCc
Q 019847 171 WERSKMSSSKSLHRFT-DHCGGVKALAWSP--HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHK 246 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~ 246 (335)
||++.... ...+. .+...+.+++|+| ++. ++++++ .||.|++||+++++.+..+.. ...+.+++|+|++.
T Consensus 168 wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 241 (814)
T 3mkq_A 168 WSLGQSTP---NFTLTTGQERGVNYVDYYPLPDKP-YMITAS--DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241 (814)
T ss_dssp EETTCSSC---SEEEECCCTTCCCEEEECCSTTCC-EEEEEC--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred EECCCCcc---eeEEecCCCCCEEEEEEEECCCCC-EEEEEe--CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence 99876433 33333 3448899999999 776 455554 799999999999999888874 56899999999999
Q ss_pred eeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCE-EEEEeCCCcEEEEecCCCC
Q 019847 247 EILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLT-VATAGADETIRFWEAFGPS 314 (335)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~v~iw~~~~~~ 314 (335)
.++++ +.||.|++||+.+++.+..+..|...+.+++|+|++.. +++++.|+.+.+|++....
T Consensus 242 ~l~~~------~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 242 IIISG------SEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp EEEEE------ETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred EEEEE------eCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 99887 67999999999999999999999999999999999863 2445557778899887643
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=269.88 Aligned_cols=275 Identities=19% Similarity=0.281 Sum_probs=239.3
Q ss_pred CCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCc
Q 019847 45 NGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKS 124 (335)
Q Consensus 45 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 124 (335)
.|...+...+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+| ++++|++++.||.
T Consensus 19 ~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~ 97 (369)
T 3zwl_B 19 QGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYS 97 (369)
T ss_dssp SCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTE
T ss_pred eccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCe
Confidence 455667778889999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred EEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC-----CeEEEEEccCCCccc--------ceeeccCCCC-
Q 019847 125 IINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD-----NVVRIWERSKMSSSK--------SLHRFTDHCG- 190 (335)
Q Consensus 125 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--------~~~~~~~~~~- 190 (335)
|++||+++++.. ..+. +...+.+++|+|+++++++++.+ |.|++||++...... ....+..|..
T Consensus 98 i~iwd~~~~~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 98 IKLWDVSNGQCV-ATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp EEEEETTTCCEE-EEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred EEEEECCCCcEE-EEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 999999877653 3344 88999999999999999999999 999999988654322 2333445555
Q ss_pred -CeeEEEecCCCCcEEEEecCCCCCeEEEEECCC-CceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEE
Q 019847 191 -GVKALAWSPHQVNVLATGGGREDGCIKIWNVQK-GTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK 267 (335)
Q Consensus 191 -~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 267 (335)
.+.+++|+|++..+++ ++ .||.|++||+++ ++.+..+.. ...+.+++|+|++.+++++ +.|+.|++||
T Consensus 176 ~~~~~~~~~~~~~~l~~-~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------~~d~~i~v~d 246 (369)
T 3zwl_B 176 DAATVAGWSTKGKYIIA-GH--KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS------SRDTNSFLVD 246 (369)
T ss_dssp CCEEEEEECGGGCEEEE-EE--TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEE------ETTSEEEEEE
T ss_pred cceeEEEEcCCCCEEEE-Ec--CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEe------cCCceEEEEE
Confidence 8999999999975555 44 799999999998 677777764 5689999999999999887 6799999999
Q ss_pred CCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCC--------------cEEEEecCCCCCCCCccccccccccceec
Q 019847 268 YPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADE--------------TIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
+.+++.+..+. +...+..++|+|+++++++++.++ .+++||+...+.......|...|.++.++
T Consensus 247 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 324 (369)
T 3zwl_B 247 VSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS 324 (369)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred CCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC
Confidence 99999988887 677899999999999999999988 89999999988877778888888888775
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=288.14 Aligned_cols=307 Identities=15% Similarity=0.197 Sum_probs=234.3
Q ss_pred cccc-ceeeeecC--C--ceEEEecCCeEEEEEecCC------ceeeEEeecC---------------------------
Q 019847 15 EDYY-SKVIDWGR--N--NVLAVALGPVLFLWKWENG------KVKKLLQVPG--------------------------- 56 (335)
Q Consensus 15 ~~~~-~~~~~~~~--~--~~~~~~~~~~i~vw~~~~~------~~~~~~~~~~--------------------------- 56 (335)
+... +.+++|++ + .+++++.|+.|++||+.++ +......+..
T Consensus 62 h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 141 (615)
T 1pgu_A 62 HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNF 141 (615)
T ss_dssp TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCS
T ss_pred CCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCc
Confidence 4456 88999998 4 4666778999999999755 2222333333
Q ss_pred -----------------CCCCceEEEEcCCCC-EEEEEECCCcEEEEeCCCceeEeeeccccc---ceeEeeecCCC-CC
Q 019847 57 -----------------EDDYPTSVSWSHDAK-TLAVGYMDSKLQLWDAETSKLVRNLEGHHR---RVATSSWNHWN-GH 114 (335)
Q Consensus 57 -----------------~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~-~~ 114 (335)
|...|.+++|+|+++ ++++++.||.|++||+.+++.+..+..|.. .|.+++|+| + ++
T Consensus 142 ~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 220 (615)
T 1pgu_A 142 GVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP-DSGE 220 (615)
T ss_dssp EEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS-TTCC
T ss_pred cEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC-CCCC
Confidence 444555555555555 677888889999999999999999999999 999999999 7 99
Q ss_pred EEEEeeCCCcEEEEecccCCeeeEEee---cCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcc------------
Q 019847 115 ILTSGSKDKSIINHDVRVSNNVTSCIK---AHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSS------------ 179 (335)
Q Consensus 115 ~l~~~~~dg~i~~~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------ 179 (335)
+|++++.||.|++||+++++....... .|...|.+++|+ ++++|++++.||.|++||+++....
T Consensus 221 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 299 (615)
T 1pgu_A 221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299 (615)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred EEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC
Confidence 999999999999999987765443325 899999999999 9999999999999999998753211
Q ss_pred ------------------------------cceeeccCCCCCeeEEEecCC-----------------------------
Q 019847 180 ------------------------------KSLHRFTDHCGGVKALAWSPH----------------------------- 200 (335)
Q Consensus 180 ------------------------------~~~~~~~~~~~~v~~~~~~~~----------------------------- 200 (335)
+.+..+.+|...|.+++| |+
T Consensus 300 ~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~ 378 (615)
T 1pgu_A 300 QQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSL 378 (615)
T ss_dssp CEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEE
T ss_pred ceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEE
Confidence 112223344444444444 22
Q ss_pred ----CCcEEEE---------------------------------------------------------------------
Q 019847 201 ----QVNVLAT--------------------------------------------------------------------- 207 (335)
Q Consensus 201 ----~~~~~~~--------------------------------------------------------------------- 207 (335)
+..+++.
T Consensus 379 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (615)
T 1pgu_A 379 DNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNY 458 (615)
T ss_dssp ECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSE
T ss_pred EECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCE
Confidence 3222222
Q ss_pred ---ecCCC-CCeEEEEECCCCceE-EEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccC-C
Q 019847 208 ---GGGRE-DGCIKIWNVQKGTCI-HGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS-S 280 (335)
Q Consensus 208 ---~~g~~-d~~i~i~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~ 280 (335)
++ . |+.|++||+.+++.. ..+. +...+.+++|+|++++++++ +.|+.|++||+.+++.+..+.+ |
T Consensus 459 l~~~~--~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~------~~dg~i~iw~~~~~~~~~~~~~~h 530 (615)
T 1pgu_A 459 VAVGL--EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG------DVMGKILLYDLQSREVKTSRWAFR 530 (615)
T ss_dssp EEEEE--TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEE------ETTSCEEEEETTTTEEEECCSCCC
T ss_pred EEEee--cCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEc------CCCCeEEEeeCCCCcceeEeecCC
Confidence 21 3 555555555554433 2222 34679999999999999988 6799999999999999999988 9
Q ss_pred CCceeEeEEcC----------CCCEEEEEeCCCcEEEEecCCC-CCCCCccccccccccceec
Q 019847 281 NSRILDLSQSP----------DGLTVATAGADETIRFWEAFGP-SGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 281 ~~~i~~~~~~~----------~~~~l~~~~~dg~v~iw~~~~~-~~~~~~~~~~~~i~~~~~~ 332 (335)
...|++++|+| ++++|++++.||.|++|++..+ +......+|...|.++.++
T Consensus 531 ~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s 593 (615)
T 1pgu_A 531 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE 593 (615)
T ss_dssp SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEE
T ss_pred CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEc
Confidence 99999999999 9999999999999999999987 5555677898999888875
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=277.58 Aligned_cols=282 Identities=14% Similarity=0.136 Sum_probs=213.8
Q ss_pred cccceeeeecCC-ceEEEec--------CCeEEEEEecCCce--------eeEEeecCCCCCceEEEEcCCCCEEEEEE-
Q 019847 16 DYYSKVIDWGRN-NVLAVAL--------GPVLFLWKWENGKV--------KKLLQVPGEDDYPTSVSWSHDAKTLAVGY- 77 (335)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~--------~~~i~vw~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 77 (335)
.+++.+++|+++ .+++++. ++.|++|+++.+.. .....+.+|...|.++++ +++.+++|.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEEC
Confidence 578999999985 4555443 23599999976542 223456788899998876 455677653
Q ss_pred ----------CCCcEEEEeCCCceeEe----ee-----cccccceeEeeecCCCCCEEEE--eeCCCcEEEEecccCCee
Q 019847 78 ----------MDSKLQLWDAETSKLVR----NL-----EGHHRRVATSSWNHWNGHILTS--GSKDKSIINHDVRVSNNV 136 (335)
Q Consensus 78 ----------~dg~i~iw~~~~~~~~~----~~-----~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~~~d~~~~~~~ 136 (335)
.|+.+++|++.+.+... .. ..+...+.+++|+| +++++++ ++.|++|++||+++....
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~ 170 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEK 170 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEE
Confidence 47789999986543211 11 12345688999999 8988764 447899999999876654
Q ss_pred eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC--
Q 019847 137 TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG-- 214 (335)
Q Consensus 137 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~-- 214 (335)
.. + .|...|.+++|+|+++++++++.+ .+.+|+..+... ........|...|.+++|+|++..+++.+ .|+
T Consensus 171 ~~-~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~-~~~~~~~~~~~~v~~v~fspdg~~l~~~s---~d~~~ 243 (365)
T 4h5i_A 171 FE-I-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSC-IARKTDFDKNWSLSKINFIADDTVLIAAS---LKKGK 243 (365)
T ss_dssp EE-E-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCE-EEEECCCCTTEEEEEEEEEETTEEEEEEE---ESSSC
T ss_pred EE-e-CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcc-eeeeecCCCCCCEEEEEEcCCCCEEEEEe---cCCcc
Confidence 33 3 478889999999999999999855 566666554322 12234456888899999999997666654 354
Q ss_pred --eEEEEECCCCceE----EEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecc-cCCCCceeE
Q 019847 215 --CIKIWNVQKGTCI----HGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL-QSSNSRILD 286 (335)
Q Consensus 215 --~i~i~d~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~ 286 (335)
.+++||+...... ..+. +...|.+++|+|+|+++++| +.|+.|+|||+.+++++..+ .+|..+|++
T Consensus 244 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasg------s~D~~V~iwd~~~~~~~~~~~~gH~~~V~~ 317 (365)
T 4h5i_A 244 GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLA------SNDNSIALVKLKDLSMSKIFKQAHSFAITE 317 (365)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEE------ETTSCEEEEETTTTEEEEEETTSSSSCEEE
T ss_pred eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEE------cCCCEEEEEECCCCcEEEEecCcccCCEEE
Confidence 6889998776542 2233 34679999999999999988 77999999999999999874 789999999
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 287 LSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 287 ~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
++|+|||++|++|+.|++|+||++...
T Consensus 318 v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 318 VTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999999654
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=269.28 Aligned_cols=255 Identities=20% Similarity=0.336 Sum_probs=215.1
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc----eeEeeecccccceeEeeecCC-CCCEEEEeeCCCcEEEE
Q 019847 54 VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS----KLVRNLEGHHRRVATSSWNHW-NGHILTSGSKDKSIINH 128 (335)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~ 128 (335)
+.+|...|++++|+|++++|++|+.||.|++||+.++ +....+..|...|.+++|+|. ++++|++++.||.|++|
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 4689999999999999999999999999999999876 467778889999999999985 48999999999999999
Q ss_pred ecccCC--------eeeEEeecCCCCEEEEEeecC--CCEEEEEeCCCeEEEEEccCCCccccee----------eccCC
Q 019847 129 DVRVSN--------NVTSCIKAHSGEVCGLKWSNE--GNLLASGGDDNVVRIWERSKMSSSKSLH----------RFTDH 188 (335)
Q Consensus 129 d~~~~~--------~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~~~~~ 188 (335)
|++.+. .....+..|...|.+++|+|+ +++|++++.||.|++||+++......+. ....|
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 166 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence 998654 446667789999999999999 9999999999999999998765433221 11257
Q ss_pred CCCeeEEEecCC--CCcEEEEecCCCCCeEEEEECCCCce--EEEee-cCCcEeEEEeCCCC----ceeeeeeeeeeecC
Q 019847 189 CGGVKALAWSPH--QVNVLATGGGREDGCIKIWNVQKGTC--IHGID-AKAQICGLEWNRHH----KEILSGHGFSASGD 259 (335)
Q Consensus 189 ~~~v~~~~~~~~--~~~~~~~~~g~~d~~i~i~d~~~~~~--~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 259 (335)
...+.+++|+|+ ...++++++ .++.+.+|+...++. +..+. +...+.+++|+|++ .+++++ +.
T Consensus 167 ~~~~~~~~~~p~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~------~~ 238 (351)
T 3f3f_A 167 LQSDFCLSWCPSRFSPEKLAVSA--LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATG------CK 238 (351)
T ss_dssp SCCCEEEEECCCSSSCCEEEEEE--TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEE------ET
T ss_pred ccceeEEEeccCCCCCcEEEEec--CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEE------cC
Confidence 788999999997 234555555 799998888887765 44444 35689999999998 777777 78
Q ss_pred CCeEEEEECCCC----------------------------------------------ceeecccCCCCceeEeEEcCCC
Q 019847 260 GNKLCLWKYPNM----------------------------------------------TKVGELQSSNSRILDLSQSPDG 293 (335)
Q Consensus 260 ~~~i~i~d~~~~----------------------------------------------~~~~~~~~~~~~i~~~~~~~~~ 293 (335)
|+.|++||++++ +.+..+.+|...|++++|+|++
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 318 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG 318 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC
Confidence 999999999765 5667788899999999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCCCC
Q 019847 294 LTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 294 ~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
++|++++.||.|++|++..++..
T Consensus 319 ~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 319 TILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp CCEEEEETTSCEEEEEECTTSCE
T ss_pred CEEEEecCCCcEEEEecCcCcch
Confidence 99999999999999999976543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-40 Score=278.71 Aligned_cols=269 Identities=15% Similarity=0.163 Sum_probs=229.6
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce------eEeeecccccceeEeeecCCC----C---CEEE
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK------LVRNLEGHHRRVATSSWNHWN----G---HILT 117 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~~----~---~~l~ 117 (335)
...+.+|...|++++|+| ++|++|+.||.|++||+.+++ .+..+..|...|.+++|+| + + ++|+
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ-AIERDAFELCLVA 85 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEE-EEETTTEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEec-ccccCCccccEEE
Confidence 445678999999999998 799999999999999999887 7888889999999999999 7 8 9999
Q ss_pred EeeCCCcEEEEecccCCe----eeEEeecC-----CCCEEEEEee----cCCCE-EEEEeCCCeEEEEEccC------CC
Q 019847 118 SGSKDKSIINHDVRVSNN----VTSCIKAH-----SGEVCGLKWS----NEGNL-LASGGDDNVVRIWERSK------MS 177 (335)
Q Consensus 118 ~~~~dg~i~~~d~~~~~~----~~~~~~~~-----~~~i~~~~~~----~~~~~-l~~~~~dg~i~iwd~~~------~~ 177 (335)
+++.||.|++||+.+... ....+..| ...|.+++|+ |++++ |++++.||.|++||++. ..
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 999999999999987653 14556677 5899999999 99999 99999999999999987 33
Q ss_pred ccc--ceeec-------cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-------CCcEeEEEe
Q 019847 178 SSK--SLHRF-------TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-------KAQICGLEW 241 (335)
Q Consensus 178 ~~~--~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-------~~~~~~~~~ 241 (335)
... ....+ ..|...|.+++|+|++ ++++++ .|+.|++||+++++.+..+.. ...+.+++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEe--CCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence 322 00133 4578899999999998 555655 899999999999999999886 678999999
Q ss_pred CCCCceeeeeeeeeeecCC---CeEEEEECCCCceeecccC-------------CCCceeEeEEcCCCCEEEEEeCCCcE
Q 019847 242 NRHHKEILSGHGFSASGDG---NKLCLWKYPNMTKVGELQS-------------SNSRILDLSQSPDGLTVATAGADETI 305 (335)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~dg~v 305 (335)
+|++.+++++ +.| +.|++||+.+++.+..+.. |...|.+++|+|++++|++++.||.|
T Consensus 242 ~~~~~~l~~~------~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 315 (397)
T 1sq9_A 242 SPQGSLLAIA------HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 315 (397)
T ss_dssp CSSTTEEEEE------EEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred CCCCCEEEEE------ecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 9999999887 557 9999999999999999988 99999999999999999999999999
Q ss_pred EEEecCCCCCCCCcc------cc---------------ccccccceec
Q 019847 306 RFWEAFGPSGDEDSV------SH---------------LAGLVSLKTS 332 (335)
Q Consensus 306 ~iw~~~~~~~~~~~~------~~---------------~~~i~~~~~~ 332 (335)
++||+...+...... .| ...|.++.++
T Consensus 316 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~ 363 (397)
T 1sq9_A 316 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL 363 (397)
T ss_dssp EEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEE
T ss_pred EEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEec
Confidence 999999877666555 55 7777777664
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-39 Score=267.46 Aligned_cols=278 Identities=14% Similarity=0.134 Sum_probs=232.1
Q ss_pred cccccceeeeecCC--ceEEEecCCeEEEEEecCCc-eeeEEeecCCCCCceEEEEcCCCC-EEEEEECCCcEEEEeC-C
Q 019847 14 MEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGK-VKKLLQVPGEDDYPTSVSWSHDAK-TLAVGYMDSKLQLWDA-E 88 (335)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~-~ 88 (335)
.+...+.+++|+++ .+++++.|+.|++|++++++ ......+.+|...|.+++|+|+++ +|++|+.||.|++||+ .
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence 45567889999974 57777899999999999877 112233447899999999999999 9999999999999999 7
Q ss_pred CceeEeeecc--cccceeEeeecCCCCCEEEEeeCCCcEEEEeccc---------CCeeeEEeecCCCCEEEEEeecCCC
Q 019847 89 TSKLVRNLEG--HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV---------SNNVTSCIKAHSGEVCGLKWSNEGN 157 (335)
Q Consensus 89 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (335)
+++. ..+.. |...|.+++|+| ++.|++++.|+.|++||+++ ... ...+. |...+.+++|+|++
T Consensus 89 ~~~~-~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~- 162 (342)
T 1yfq_A 89 SPSF-QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN-SNNTK-VKNKIFTMDTNSSR- 162 (342)
T ss_dssp SSSE-EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESC-SSSSS-SCCCEEEEEECSSE-
T ss_pred CCce-EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCe-eeEEe-eCCceEEEEecCCc-
Confidence 7754 67778 999999999998 88999999999999999986 443 33333 88999999999986
Q ss_pred EEEEEeCCCeEEEEEccC-CCcccceeeccCCCCCeeEEEecC-CCCcEEEEecCCCCCeEEEEECCCC------ceEEE
Q 019847 158 LLASGGDDNVVRIWERSK-MSSSKSLHRFTDHCGGVKALAWSP-HQVNVLATGGGREDGCIKIWNVQKG------TCIHG 229 (335)
Q Consensus 158 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~g~~d~~i~i~d~~~~------~~~~~ 229 (335)
+++++.|+.|++||++. ... ........|...+.+++|+| ++. ++++++ .||.|++|+++.. +....
T Consensus 163 -l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~--~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 163 -LIVGMNNSQVQWFRLPLCEDD-NGTIEESGLKYQIRDVALLPKEQE-GYACSS--IDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp -EEEEESTTEEEEEESSCCTTC-CCEEEECSCSSCEEEEEECSGGGC-EEEEEE--TTSEEEEEECCTTCCSTTCTTCEE
T ss_pred -EEEEeCCCeEEEEECCccccc-cceeeecCCCCceeEEEECCCCCC-EEEEEe--cCCcEEEEEEcCCCccccccccee
Confidence 99999999999999987 432 22334456788999999999 886 455554 7999999999887 66667
Q ss_pred eecCC----------cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC-CCceeEeEEcCCCCEEEE
Q 019847 230 IDAKA----------QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS-NSRILDLSQSPDGLTVAT 298 (335)
Q Consensus 230 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~ 298 (335)
+..+. .+.+++|+|++++++++ +.||.|++||+.+++.+..+..| ..+|++++ |++++|++
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~------~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s 309 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA------GSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCL 309 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEE------ETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEE
T ss_pred eecccccccccccceeEEEEEEcCCCCEEEEe------cCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEE
Confidence 76542 89999999999999887 67999999999999999999998 99999999 99999999
Q ss_pred EeCCCc-EEEEec
Q 019847 299 AGADET-IRFWEA 310 (335)
Q Consensus 299 ~~~dg~-v~iw~~ 310 (335)
++.||. .+.|..
T Consensus 310 ~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 310 ATSDDTFKTNAAI 322 (342)
T ss_dssp EEECTHHHHCSSS
T ss_pred EecCCcccccccc
Confidence 999998 665554
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=272.44 Aligned_cols=246 Identities=15% Similarity=0.201 Sum_probs=215.1
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce--eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccC
Q 019847 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK--LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVS 133 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 133 (335)
.|..+|++++|+|++++|++++.||.|++||+.+++ .+..+..|...|.+++|+| ++++|++++.||.|++||+++.
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETT
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCCC
Confidence 488999999999999999999999999999999987 8888999999999999999 9999999999999999999866
Q ss_pred Cee-eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceee-ccCCCCCeeEEEecCCCCcEEEEecCC
Q 019847 134 NNV-TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHR-FTDHCGGVKALAWSPHQVNVLATGGGR 211 (335)
Q Consensus 134 ~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~g~ 211 (335)
+.. ...+..|...|.+++|+|++++|++++.|+.|++||++.......... ...|...|.+++|+|++..+ ++++
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~-- 161 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL-AAGS-- 161 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE-EEEE--
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE-EEEc--
Confidence 532 223467899999999999999999999999999999987543222333 35688999999999998654 4544
Q ss_pred CCCeEEEEEC------------------CCCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc
Q 019847 212 EDGCIKIWNV------------------QKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 212 ~d~~i~i~d~------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 272 (335)
.|+.|++||+ ..++.+..+.. ...+.+++|+|++.+++++ +.|+.|++||+++++
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------~~d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV------SHDSTVCLADADKKM 235 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE------ETTTEEEEEEGGGTT
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEE------eCCCEEEEEECCCCc
Confidence 7999999995 46777777754 5689999999999999887 679999999999999
Q ss_pred eeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 273 KVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
.+..+..|..+|.+++|+|++++|+++ .|+.|++|++..
T Consensus 236 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 236 AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 999999999999999999999988877 899999999987
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=276.63 Aligned_cols=253 Identities=21% Similarity=0.388 Sum_probs=218.1
Q ss_pred EeecCCCCCceEEEEcCC-CCEEEEEECCCcEEEEeCCC----------ceeEeeecccccceeEeeecCCCCC-EEEEe
Q 019847 52 LQVPGEDDYPTSVSWSHD-AKTLAVGYMDSKLQLWDAET----------SKLVRNLEGHHRRVATSSWNHWNGH-ILTSG 119 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~ 119 (335)
.....|...|++++|+|+ +.+|++++.||.|++|++.+ .+.+..+..|...+.+++|+| ++. +|++|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP-NLNGYLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT-TSTTEEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC-CCCCeEEEE
Confidence 344578999999999997 78999999999999999986 577788889999999999999 555 99999
Q ss_pred eCCCcEEEEecccCCe------eeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCe
Q 019847 120 SKDKSIINHDVRVSNN------VTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGV 192 (335)
Q Consensus 120 ~~dg~i~~~d~~~~~~------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 192 (335)
+.||.|++||+..... ....+..|...|.+++|+| ++.+|++++.||.|++||++.......+..+..|...|
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 9999999999986332 1345668999999999999 78899999999999999999765445666777899999
Q ss_pred eEEEecCCCCcEEEEecCCCCCeEEEEECCC-CceEEEee-cCCcEeEEEeCCCCce-eeeeeeeeeecCCCeEEEEECC
Q 019847 193 KALAWSPHQVNVLATGGGREDGCIKIWNVQK-GTCIHGID-AKAQICGLEWNRHHKE-ILSGHGFSASGDGNKLCLWKYP 269 (335)
Q Consensus 193 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~d~~ 269 (335)
++++|+|++++++++++ .||.|++||+++ .+++..+. +...+.+++|+|+++. ++++ +.|+.|++||+.
T Consensus 281 ~~i~~~p~~~~~l~tg~--~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~------~~d~~i~iwd~~ 352 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS------GTDRRLHVWDLS 352 (430)
T ss_dssp EEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEE------ETTSCCEEEEGG
T ss_pred EEEEeCCCCCCEEEEEe--CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEE------eCCCcEEEEeCC
Confidence 99999999988888887 899999999998 55667776 4678999999999975 5555 679999999998
Q ss_pred C--------------CceeecccCCCCceeEeEEcCCCC-EEEEEeCCCcEEEEecCCC
Q 019847 270 N--------------MTKVGELQSSNSRILDLSQSPDGL-TVATAGADETIRFWEAFGP 313 (335)
Q Consensus 270 ~--------------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~ 313 (335)
. .+.+..+.+|...|++++|+|+++ +|++++.||.|++|++...
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 353 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp GTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 7 366777888999999999999998 8999999999999999764
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=261.55 Aligned_cols=247 Identities=19% Similarity=0.324 Sum_probs=203.4
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCC--CCEEEEEECCCcEEEEeCCCc
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHD--AKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~ 90 (335)
+...+.+++|+++ .+++++.|+.|++||++.........+.+|...|.+++|+|+ +++|++|+.||+|++||++++
T Consensus 8 h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~ 87 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG 87 (297)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS
T ss_pred CcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC
Confidence 4557888888873 677788999999999986544445677899999999999863 899999999999999999887
Q ss_pred e--eEeeecccccceeEeeecCCC-CCEEEEeeCCCcEEEEecccCCe-eeEEeecCCCCEEEEEeecC-----------
Q 019847 91 K--LVRNLEGHHRRVATSSWNHWN-GHILTSGSKDKSIINHDVRVSNN-VTSCIKAHSGEVCGLKWSNE----------- 155 (335)
Q Consensus 91 ~--~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~----------- 155 (335)
+ .+..+..|...|.+++|+|.. +.+|++++.|+.|++||++.... ....+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~ 167 (297)
T 2pm7_B 88 RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT 167 (297)
T ss_dssp CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----------
T ss_pred ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCC
Confidence 4 556677899999999999932 78999999999999999986542 24567789999999999996
Q ss_pred --CCEEEEEeCCCeEEEEEccCCCc-ccceeeccCCCCCeeEEEecCCC--CcEEEEecCCCCCeEEEEECCCCc---eE
Q 019847 156 --GNLLASGGDDNVVRIWERSKMSS-SKSLHRFTDHCGGVKALAWSPHQ--VNVLATGGGREDGCIKIWNVQKGT---CI 227 (335)
Q Consensus 156 --~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~g~~d~~i~i~d~~~~~---~~ 227 (335)
+++|++|+.|+.|++||++.... ......+.+|...|.+++|+|++ ..++++++ .|++|++||+++.. ..
T Consensus 168 ~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s--~D~~v~iWd~~~~~~~~~~ 245 (297)
T 2pm7_B 168 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS--QDRTCIIWTQDNEQGPWKK 245 (297)
T ss_dssp --CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--TTSCEEEEEESSTTSCCEE
T ss_pred CCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE--CCCcEEEEEeCCCCCccce
Confidence 57999999999999999986432 12456778999999999999986 46777776 89999999998753 11
Q ss_pred EEe---ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC
Q 019847 228 HGI---DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269 (335)
Q Consensus 228 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 269 (335)
..+ .+...+.+++|+|++++++++ +.|+.|++|+..
T Consensus 246 ~~~~~~~~~~~v~~~~~s~~g~~las~------~~D~~v~lw~~~ 284 (297)
T 2pm7_B 246 TLLKEEKFPDVLWRASWSLSGNVLALS------GGDNKVTLWKEN 284 (297)
T ss_dssp EESSSSCCSSCEEEEEECSSSCCEEEE------ETTSCEEEEEEC
T ss_pred eeeecccCCCcEEEEEECCCCCEEEEE------cCCCcEEEEEEC
Confidence 222 235679999999999999887 779999999975
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=273.09 Aligned_cols=265 Identities=15% Similarity=0.204 Sum_probs=219.6
Q ss_pred EEeecCCCCCceEEEEcCCC-CEEEEEECCCcEEEEeCCCceeEeeec--ccccceeEeeecCCCCCEEEEeeCCCcEEE
Q 019847 51 LLQVPGEDDYPTSVSWSHDA-KTLAVGYMDSKLQLWDAETSKLVRNLE--GHHRRVATSSWNHWNGHILTSGSKDKSIIN 127 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 127 (335)
...+.+|...|++++|+|++ ++|++|+.||.|++||+.+++....+. +|...|.+++|+|.++++|++++.|+.|++
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 145 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL 145 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence 44567899999999999999 999999999999999999888777665 699999999999966799999999999999
Q ss_pred EecccCCeeeEEeec---CCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcE
Q 019847 128 HDVRVSNNVTSCIKA---HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNV 204 (335)
Q Consensus 128 ~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 204 (335)
||++. .. ...+.. |...|.+++|+|++++|++++.|+.|++||++ ...+..+..|...|.+++|+|+++.+
T Consensus 146 wd~~~-~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 146 RDFSG-SV-IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD----GHEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EETTS-CE-EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT----SCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred EECCC-Cc-eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC----CCEEEEeccCCCcEEEEEECCCCCCE
Confidence 99984 33 333433 34789999999999999999999999999984 34577778899999999999999867
Q ss_pred EEEecCCCCCeEEEEECCC----CceEEEeecCCcEeEEEeCC-CCceeeeeeeeeeecCCCeEEEEECCCCceeecccC
Q 019847 205 LATGGGREDGCIKIWNVQK----GTCIHGIDAKAQICGLEWNR-HHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS 279 (335)
Q Consensus 205 ~~~~~g~~d~~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 279 (335)
+++++ .|+.|++||+++ +..+..+.+...+.+++|+| ++.+++++ +.|+.|++||+++++....+..
T Consensus 220 l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~------~~d~~i~iwd~~~~~~~~~~~~ 291 (383)
T 3ei3_B 220 MATSS--VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTT------DQRNEIRVYSSYDWSKPDQIII 291 (383)
T ss_dssp EEEEE--TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEE------ESSSEEEEEETTBTTSCSEEEE
T ss_pred EEEEe--CCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEE------cCCCcEEEEECCCCcccccccc
Confidence 77776 899999999998 67788888888999999999 99999887 6799999999999887766654
Q ss_pred CC-----------------CceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccc--ccccccccee
Q 019847 280 SN-----------------SRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVS--HLAGLVSLKT 331 (335)
Q Consensus 280 ~~-----------------~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~--~~~~i~~~~~ 331 (335)
|. +.+..++|+|++++ +++.||.|++||+..++....... |...+..+.+
T Consensus 292 ~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~ 360 (383)
T 3ei3_B 292 HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKF 360 (383)
T ss_dssp CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEE
T ss_pred ccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEE
Confidence 42 23444667777766 778999999999998876555544 3344443344
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-41 Score=282.91 Aligned_cols=244 Identities=12% Similarity=0.174 Sum_probs=203.4
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc--eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS--KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN 134 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 134 (335)
+..+|++++|+|++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+| ++++|++++.|+.|++||+.++.
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC------
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCC
Confidence 5678999999999999999999999999999988 78888999999999999999 89999999999999999998765
Q ss_pred --eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccC-CCCCeeEEEecCCCCcEEEEecCC
Q 019847 135 --NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD-HCGGVKALAWSPHQVNVLATGGGR 211 (335)
Q Consensus 135 --~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~g~ 211 (335)
.....+..|...|.+++|+|++++|++++.|+.|++||++..........+.. |...|.+++|+|++. ++++++
T Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-- 165 (377)
T 3dwl_C 89 TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV-LLAAGC-- 165 (377)
T ss_dssp CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-EEEEEE--
T ss_pred ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-EEEEEe--
Confidence 23455678999999999999999999999999999999987654344666666 999999999999986 555554
Q ss_pred CCCeEEEEECC------------------CCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 212 EDGCIKIWNVQ------------------KGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 212 ~d~~i~i~d~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
.|+.|++||++ .++++..+.+...+.+++|+|++++++++ +.|+.|++||+.+++.
T Consensus 166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~------~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYA------GHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEE------ETTTEEC-CEECSTTS
T ss_pred CCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEE------eCCCcEEEEECCCCCC
Confidence 79999999985 34455555556789999999999999887 7799999999999987
Q ss_pred ----eecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 274 ----VGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 274 ----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
+..+..|...|.+++|+|++++|++++.|+.+ +|+..
T Consensus 240 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 240 PPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred cceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 88889999999999999999999998866655 77665
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-40 Score=269.71 Aligned_cols=250 Identities=21% Similarity=0.375 Sum_probs=203.7
Q ss_pred CCcccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC--CCCEEEEEECCCcEEEEeC
Q 019847 12 YLMEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH--DAKTLAVGYMDSKLQLWDA 87 (335)
Q Consensus 12 ~~~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~ 87 (335)
...+...+.+++|+++ .+++++.|+.|++||+++++......+.+|...|.+++|+| ++++|++|+.|++|++||+
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence 3446678899999873 57778899999999999887655667889999999999986 4899999999999999999
Q ss_pred CCc--eeEeeecccccceeEeeecCCC-CCEEEEeeCCCcEEEEecccCCe--eeEEeecCCCCEEEEEeecC-------
Q 019847 88 ETS--KLVRNLEGHHRRVATSSWNHWN-GHILTSGSKDKSIINHDVRVSNN--VTSCIKAHSGEVCGLKWSNE------- 155 (335)
Q Consensus 88 ~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~------- 155 (335)
+++ +....+.+|...|.+++|+|.. +.+|++|+.|+.|++||++.... ....+.+|...+.+++|+|+
T Consensus 89 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 168 (316)
T 3bg1_A 89 ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLI 168 (316)
T ss_dssp SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC----
T ss_pred CCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccc
Confidence 887 3566788899999999999932 78999999999999999986532 23455679999999999997
Q ss_pred ----------CCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCC---CcEEEEecCCCCCeEEEEECC
Q 019847 156 ----------GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQ---VNVLATGGGREDGCIKIWNVQ 222 (335)
Q Consensus 156 ----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~g~~d~~i~i~d~~ 222 (335)
+++|++|+.|+.|++||++.......+..+.+|...|.+++|+|++ ..++++++ .|++|++||++
T Consensus 169 ~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s--~D~~v~iw~~~ 246 (316)
T 3bg1_A 169 DHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS--QDGRVFIWTCD 246 (316)
T ss_dssp --CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE--TTCEEEEEECS
T ss_pred ccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc--CCCeEEEEEcc
Confidence 4789999999999999987543334667788999999999999986 25677776 89999999997
Q ss_pred CCc----eEEEe-ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC
Q 019847 223 KGT----CIHGI-DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269 (335)
Q Consensus 223 ~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 269 (335)
+.. ....+ .+...+.+++|+|+++.++++ +.|+.|++|+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~------~~D~~v~lw~~~ 292 (316)
T 3bg1_A 247 DASSNTWSPKLLHKFNDVVWHVSWSITANILAVS------GGDNKVTLWKES 292 (316)
T ss_dssp STTCCCCBCCEEEECSSCEEEEEECTTTCCEEEE------ESSSCEEEEEEC
T ss_pred CccccchhhhhhhcCCCcEEEEEEcCCCCEEEEE------cCCCeEEEEEEC
Confidence 631 11122 346789999999999999887 679999999965
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=299.64 Aligned_cols=269 Identities=16% Similarity=0.251 Sum_probs=236.4
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEec
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 130 (335)
...+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+..|..+|.+++|+| ++++|++++.||.|++||+
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEET
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEEC
Confidence 345668999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC
Q 019847 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210 (335)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 210 (335)
.+++. ...+.+|...|++++|+|++++|++++.||.|++||++.. ......+.+|..+|.+++|+|++..++++++
T Consensus 85 ~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~- 160 (814)
T 3mkq_A 85 NTGEK-VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN--WALEQTFEGHEHFVMCVAFNPKDPSTFASGC- 160 (814)
T ss_dssp TTCCE-EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT--SEEEEEEECCSSCEEEEEEETTEEEEEEEEE-
T ss_pred CCCcE-EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC--ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe-
Confidence 87665 5567889999999999999999999999999999998764 2445667789999999999994335666665
Q ss_pred CCCCeEEEEECCCCceEEEeecC--CcEeEEEeCC--CCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeE
Q 019847 211 REDGCIKIWNVQKGTCIHGIDAK--AQICGLEWNR--HHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILD 286 (335)
Q Consensus 211 ~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 286 (335)
.||.|++||+++++....+..+ ..+..++|+| ++..++++ +.|+.|++||+.+++.+..+.+|...|++
T Consensus 161 -~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~------~~dg~i~~~d~~~~~~~~~~~~~~~~v~~ 233 (814)
T 3mkq_A 161 -LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA------SDDLTIKIWDYQTKSCVATLEGHMSNVSF 233 (814)
T ss_dssp -TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEE------CTTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred -CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEE------eCCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence 8999999999988877776543 6899999999 89888887 77999999999999999999999999999
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcccccccccccee
Q 019847 287 LSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 287 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~ 331 (335)
++|+|++++|++++.||.|++||+...+.......+...+.++.+
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~ 278 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIAT 278 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEE
Confidence 999999999999999999999999987766555556555655544
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=301.00 Aligned_cols=288 Identities=8% Similarity=0.107 Sum_probs=214.0
Q ss_pred ccccceeeeecCCc-eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeE
Q 019847 15 EDYYSKVIDWGRNN-VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV 93 (335)
Q Consensus 15 ~~~~~~~~~~~~~~-~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 93 (335)
+...+.+++|+++. +++++.|+.|++||+++++....+. |...|++++|+|++++|++|+.||.|++||+++++..
T Consensus 57 ~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~---~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 57 DRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF---VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS 133 (902)
T ss_dssp SCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE---CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc---CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 35578999999876 7778899999999999988765553 6678999999999999999999999999999988764
Q ss_pred -----------eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC------------------C
Q 019847 94 -----------RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH------------------S 144 (335)
Q Consensus 94 -----------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~------------------~ 144 (335)
..+.+|...|.+++|+|.++..+++|+.||.| +||+++.+. ...+..| .
T Consensus 134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~h~ 211 (902)
T 2oaj_A 134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI-KQSFIYELPPFAPGGDFSEKTNEKRT 211 (902)
T ss_dssp EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE-EEEECCCBCTTCCCSTTCCCTTSCBC
T ss_pred cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce-EEEEecccCCcCCCcccccccccccC
Confidence 23467889999999999556899999999999 999986654 4444444 5
Q ss_pred CCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeec---c-------------CCCCCeeEEEec----CCCCcE
Q 019847 145 GEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF---T-------------DHCGGVKALAWS----PHQVNV 204 (335)
Q Consensus 145 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~-------------~~~~~v~~~~~~----~~~~~~ 204 (335)
..|.+++|+|++++|++++.||.|++||+++++.... +.+ . .|..+|.+++|+ |++..+
T Consensus 212 ~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~-r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~l 290 (902)
T 2oaj_A 212 PKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMA-RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSL 290 (902)
T ss_dssp CCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEE-ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEE
T ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE-EeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEE
Confidence 7899999999999999999999999999887432111 111 1 134578899994 444456
Q ss_pred EEEecCC-------------------------------------------------------------------------
Q 019847 205 LATGGGR------------------------------------------------------------------------- 211 (335)
Q Consensus 205 ~~~~~g~------------------------------------------------------------------------- 211 (335)
+++++..
T Consensus 291 l~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~ 370 (902)
T 2oaj_A 291 LISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLI 370 (902)
T ss_dssp EEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEE
T ss_pred EEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEE
Confidence 6655300
Q ss_pred -CCCeEEEEECCCCceEEE-------ee-cCCcEe----------------------------------EEEeCCCCcee
Q 019847 212 -EDGCIKIWNVQKGTCIHG-------ID-AKAQIC----------------------------------GLEWNRHHKEI 248 (335)
Q Consensus 212 -~d~~i~i~d~~~~~~~~~-------~~-~~~~~~----------------------------------~~~~~~~~~~~ 248 (335)
.|+.|++||+.++..... +. ++..+. .++|+|+++.+
T Consensus 371 s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~l 450 (902)
T 2oaj_A 371 LGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAF 450 (902)
T ss_dssp ETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEE
T ss_pred cCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEE
Confidence 123444555444322111 00 011222 23445666666
Q ss_pred eeeeeeeeecCCCeEEEEECCCCceee--cc---------cCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 249 LSGHGFSASGDGNKLCLWKYPNMTKVG--EL---------QSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~~~~~~~--~~---------~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
+++ +.|++|++||+.++.... .+ .+|...|++++|+||+++||+|+.||+|++|++.+++
T Consensus 451 aSg------s~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~ 521 (902)
T 2oaj_A 451 ITG------HSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ 521 (902)
T ss_dssp EEE------ETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECC
T ss_pred EEe------cCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcc
Confidence 665 789999999998875321 11 1788899999999999999999999999999998763
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=271.00 Aligned_cols=274 Identities=20% Similarity=0.360 Sum_probs=239.5
Q ss_pred ccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEe
Q 019847 15 EDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR 94 (335)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 94 (335)
+...+.+++|+++.+++++.|+.|++||+++++.. ..+.+|...|.+++|+ ++++++|+.||.|++||+.+++.+.
T Consensus 158 h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~ 233 (445)
T 2ovr_B 158 HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECI--HTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLH 233 (445)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEE
T ss_pred CCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEE--EEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEE
Confidence 45678899999889999999999999999998764 4566899999999995 5689999999999999999999999
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
.+..|...+.++.| +++.+++|+.||.|++||+++.. ....+.+|...|.+++| +++++++++.||.|++||++
T Consensus 234 ~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~ 307 (445)
T 2ovr_B 234 VLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE 307 (445)
T ss_dssp EEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTE-EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT
T ss_pred EEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCc-EeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECC
Confidence 99999999999999 67899999999999999998665 46667889999999999 78899999999999999987
Q ss_pred CCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee----cCCcEeEEEeCCCCceeee
Q 019847 175 KMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID----AKAQICGLEWNRHHKEILS 250 (335)
Q Consensus 175 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 250 (335)
++ +.+..+.+|...+.++.+++ . ++++++ .||.|++||+++++.+..+. +...+.+++|+ +.++++
T Consensus 308 ~~---~~~~~~~~~~~~v~~~~~~~--~-~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s 377 (445)
T 2ovr_B 308 TG---NCIHTLTGHQSLTSGMELKD--N-ILVSGN--ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVIT 377 (445)
T ss_dssp TC---CEEEEECCCCSCEEEEEEET--T-EEEEEE--TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEE
T ss_pred CC---CEEEEEcCCcccEEEEEEeC--C-EEEEEe--CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEE
Confidence 64 45777788999999988854 3 556655 89999999999999998887 45679999996 467776
Q ss_pred eeeeeeecCCCeEEEEECCCCceeecc-----cCCCCceeEeEEcCCCCEEEEEeCCCc----EEEEecCCCC
Q 019847 251 GHGFSASGDGNKLCLWKYPNMTKVGEL-----QSSNSRILDLSQSPDGLTVATAGADET----IRFWEAFGPS 314 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~----v~iw~~~~~~ 314 (335)
+ +.||.|++||+.+++.+..+ ..|.+.|.+++|+|++.++++|+.||. |.+||+....
T Consensus 378 ~------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~~ 444 (445)
T 2ovr_B 378 S------SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 444 (445)
T ss_dssp E------ETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred E------eCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCCC
Confidence 6 78999999999999998877 468889999999999999999999998 9999998753
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-39 Score=271.42 Aligned_cols=249 Identities=22% Similarity=0.347 Sum_probs=212.3
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC--CceeEeeecccccceeEeeecCCC--CCEEEEeeCCCcEEEE
Q 019847 53 QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE--TSKLVRNLEGHHRRVATSSWNHWN--GHILTSGSKDKSIINH 128 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~ 128 (335)
.+.+|...|++++|+|++++|++|+.||.|++||+. +++.+..+..|...|++++|++ + +++|++++.||.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCEEEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEEEEE
Confidence 456899999999999999999999999999999998 6677888999999999999987 4 8999999999999999
Q ss_pred ecccCCe-eeEEeecCCCCEEEEEeecC--CCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecC------
Q 019847 129 DVRVSNN-VTSCIKAHSGEVCGLKWSNE--GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP------ 199 (335)
Q Consensus 129 d~~~~~~-~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~------ 199 (335)
|++++.. ....+..|...|.+++|+|+ +++|++++.||.|++||++.... .....+..|...|.+++|+|
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-TSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-CCEEEEECCTTCEEEEEECCCC----
T ss_pred EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-eeeEEecCCCCceEEEEEcCcccccc
Confidence 9987652 45667779999999999998 99999999999999999987543 23445667999999999999
Q ss_pred -------CCCcEEEEecCCCCCeEEEEECCCCce----EEEee-cCCcEeEEEeCCC---CceeeeeeeeeeecCCCeEE
Q 019847 200 -------HQVNVLATGGGREDGCIKIWNVQKGTC----IHGID-AKAQICGLEWNRH---HKEILSGHGFSASGDGNKLC 264 (335)
Q Consensus 200 -------~~~~~~~~~~g~~d~~i~i~d~~~~~~----~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~ 264 (335)
++. ++++++ .|+.|++||+++++. ...+. +...+.+++|+|+ +.+++++ +.|+.|+
T Consensus 164 ~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~------~~dg~i~ 234 (379)
T 3jrp_A 164 GEHNGTKESR-KFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV------SQDRTCI 234 (379)
T ss_dssp ------CTTC-EEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE------ETTSCEE
T ss_pred ccccCCCCCC-EEEEEe--CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE------eCCCEEE
Confidence 454 555655 899999999987653 33444 3568999999999 8888877 7799999
Q ss_pred EEECCCCc-----eeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 265 LWKYPNMT-----KVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 265 i~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
+||+.+++ .+.....|...|++++|+|++++|++++.||.|++|++..
T Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 99998864 3333445888999999999999999999999999999984
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=263.43 Aligned_cols=282 Identities=19% Similarity=0.290 Sum_probs=226.5
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCC-CCEEEEEECCCcEEEEeCCCce-----eEeeecccccceeEeeecC
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHD-AKTLAVGYMDSKLQLWDAETSK-----LVRNLEGHHRRVATSSWNH 110 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~v~~~~~~~ 110 (335)
.++++...+.+.....++.+|.+.|++++|+|+ +++|++|+.||+|+|||+.+.+ +...+.+|...|.+++|+|
T Consensus 17 ~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~ 96 (340)
T 4aow_A 17 NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 96 (340)
T ss_dssp ---------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT
T ss_pred cEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC
Confidence 455666666665556678999999999999997 6899999999999999987643 5667889999999999999
Q ss_pred CCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCC
Q 019847 111 WNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCG 190 (335)
Q Consensus 111 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 190 (335)
++++|++++.|+.|++|+...... ......+...+....+++++++|++++.|+.+++||+... ........+|..
T Consensus 97 -dg~~l~s~~~d~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~--~~~~~~~~~~~~ 172 (340)
T 4aow_A 97 -DGQFALSGSWDGTLRLWDLTTGTT-TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV--CKYTVQDESHSE 172 (340)
T ss_dssp -TSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC--EEEEECSSSCSS
T ss_pred -CCCEEEEEcccccceEEeecccce-eeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCC--ceEEEEeccccC
Confidence 999999999999999999985544 5556678889999999999999999999999999998753 233455667899
Q ss_pred CeeEEEecCCCCc-EEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEEC
Q 019847 191 GVKALAWSPHQVN-VLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268 (335)
Q Consensus 191 ~v~~~~~~~~~~~-~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 268 (335)
.+..++|++++.. ++++++ .|+.|++||+++++.+..+.. ..++.+++|+|++++++++ +.|+.|++||+
T Consensus 173 ~v~~~~~~~~~~~~~~~s~~--~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~------s~Dg~i~iwd~ 244 (340)
T 4aow_A 173 WVSCVRFSPNSSNPIIVSCG--WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG------GKDGQAMLWDL 244 (340)
T ss_dssp CEEEEEECSCSSSCEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE------ETTCEEEEEET
T ss_pred cccceEEccCCCCcEEEEEc--CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEE------eCCCeEEEEEe
Confidence 9999999988654 556665 899999999999999888875 5689999999999999887 77999999999
Q ss_pred CCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC---------CCccccccccccceec
Q 019847 269 PNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGD---------EDSVSHLAGLVSLKTS 332 (335)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~---------~~~~~~~~~i~~~~~~ 332 (335)
++.+++..+..+ ..|.+++|+|++. +++++.|+.|++||+...... .....|...|.++.++
T Consensus 245 ~~~~~~~~~~~~-~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 315 (340)
T 4aow_A 245 NEGKHLYTLDGG-DIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS 315 (340)
T ss_dssp TTTEEEEEEECS-SCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEEC
T ss_pred ccCceeeeecCC-ceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEEC
Confidence 999998888765 4699999999886 456667999999999865322 1233567777777664
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=306.15 Aligned_cols=305 Identities=18% Similarity=0.294 Sum_probs=260.0
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC--CCCEEEEEECCCcEEEEeCCCc
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH--DAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
+...+.+++|+++ .+++++.|+.|++||+.+++... .+.+|...|.+++|+| ++.++++|+.||.|++||+.++
T Consensus 656 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~ 733 (1249)
T 3sfz_A 656 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH--TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS
T ss_pred CCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEE--EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc
Confidence 4567889999884 57777889999999999998644 4568999999999999 5568999999999999999999
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe-----------------------------------
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN----------------------------------- 135 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~----------------------------------- 135 (335)
+.+..+.+|...|.+++|+| +++.|++++.||.|++||+.++..
T Consensus 734 ~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1249)
T 3sfz_A 734 ECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK 812 (1249)
T ss_dssp SEEEEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSE
T ss_pred chhheecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCE
Confidence 99999999999999999999 999999999999999999864321
Q ss_pred -------------------------------------------------------------eeEEeecCCCCEEEEEeec
Q 019847 136 -------------------------------------------------------------VTSCIKAHSGEVCGLKWSN 154 (335)
Q Consensus 136 -------------------------------------------------------------~~~~~~~~~~~i~~~~~~~ 154 (335)
....+.+|...|.+++|+|
T Consensus 813 l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp 892 (1249)
T 3sfz_A 813 IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP 892 (1249)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECC
Confidence 1122346778899999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCC----------------------------------------------------------
Q 019847 155 EGNLLASGGDDNVVRIWERSKM---------------------------------------------------------- 176 (335)
Q Consensus 155 ~~~~l~~~~~dg~i~iwd~~~~---------------------------------------------------------- 176 (335)
++++|++++.||.|++||+...
T Consensus 893 dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 972 (1249)
T 3sfz_A 893 DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPH 972 (1249)
T ss_dssp TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTT
T ss_pred CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCC
Confidence 9999999999999999996421
Q ss_pred ------------------CcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeE
Q 019847 177 ------------------SSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICG 238 (335)
Q Consensus 177 ------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 238 (335)
........+.+|...|.+++|+|+++.+++.+ .|+.|++||+.+++......+...+.+
T Consensus 973 g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~v~~ 1049 (1249)
T 3sfz_A 973 LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS---EDSVIQVWNWQTGDYVFLQAHQETVKD 1049 (1249)
T ss_dssp SSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEEC---SSSBEEEEETTTTEEECCBCCSSCEEE
T ss_pred CCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEc---CCCEEEEEECCCCceEEEecCCCcEEE
Confidence 01122344567889999999999997665544 799999999999998877777889999
Q ss_pred EEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 239 LEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
+.|+|++..+ ++ +.|+.|++||+.+++....+.+|...|++++|+|++++|++++.||.|++||+..++....
T Consensus 1050 ~~~~~~~~l~-~~------~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~ 1122 (1249)
T 3sfz_A 1050 FRLLQDSRLL-SW------SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE 1122 (1249)
T ss_dssp EEECSSSEEE-EE------ESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC
T ss_pred EEEcCCCcEE-EE------ECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee
Confidence 9999977644 33 5699999999999999999999999999999999999999999999999999999988888
Q ss_pred ccccccccccceec
Q 019847 319 SVSHLAGLVSLKTS 332 (335)
Q Consensus 319 ~~~~~~~i~~~~~~ 332 (335)
..+|...|.++.++
T Consensus 1123 l~~h~~~v~~~~~s 1136 (1249)
T 3sfz_A 1123 LKGHNGCVRCSAFS 1136 (1249)
T ss_dssp CCCCSSCEEEEEEC
T ss_pred eccCCCcEEEEEEC
Confidence 88999999888775
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-39 Score=262.71 Aligned_cols=262 Identities=17% Similarity=0.255 Sum_probs=226.2
Q ss_pred eEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEe
Q 019847 50 KLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHD 129 (335)
Q Consensus 50 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 129 (335)
....+.+|...|++++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+| ++++|++++.||.+++|+
T Consensus 10 ~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 10 LSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVP 87 (313)
T ss_dssp EEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEEE
T ss_pred HHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEEE
Confidence 35567899999999999 9999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cccCC--eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEE
Q 019847 130 VRVSN--NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207 (335)
Q Consensus 130 ~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 207 (335)
+.... .....+..|...|.+++| +++++++++.||.|++|| .......+..|..++.++.|.|....++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 88 LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK-----EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE-----TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc-----CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 87643 345567889999999999 567999999999999999 234566777899999999999833345666
Q ss_pred ecCCCCCeEEEEECCCCceEEEee--cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCcee
Q 019847 208 GGGREDGCIKIWNVQKGTCIHGID--AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRIL 285 (335)
Q Consensus 208 ~~g~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~ 285 (335)
++ .|+.|++|| ..+....+. +...+.+++|+|++. ++++ +.++.|++||+++++.+..+..|...|+
T Consensus 161 ~~--~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~------~~dg~i~i~d~~~~~~~~~~~~~~~~i~ 229 (313)
T 3odt_A 161 AS--ADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISC------SNDGLIKLVDMHTGDVLRTYEGHESFVY 229 (313)
T ss_dssp EE--TTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEE------ETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EE--CCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEc------cCCCeEEEEECCchhhhhhhhcCCceEE
Confidence 55 899999999 445555554 567899999999998 6665 6799999999999999999999999999
Q ss_pred EeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 286 DLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 286 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
+++|+|++ .|++++.||.|++||+..++.......|...|.++.++
T Consensus 230 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~ 275 (313)
T 3odt_A 230 CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCM 275 (313)
T ss_dssp EEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEEC
T ss_pred EEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEc
Confidence 99999999 68999999999999999988777777777778777664
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-39 Score=274.83 Aligned_cols=264 Identities=18% Similarity=0.298 Sum_probs=213.1
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCC-EEEEEECCCcEEEEeC----CCce------eEeeecc------
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAK-TLAVGYMDSKLQLWDA----ETSK------LVRNLEG------ 98 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~----~~~~------~~~~~~~------ 98 (335)
..+.+|+++... ..+....|...|++++|+|+++ +|++|+.||.|++|++ .+++ ....+..
T Consensus 25 ~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 1r5m_A 25 SIDSSDDLDGFV--KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA 102 (425)
T ss_dssp ---------CCC--EECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-
T ss_pred cccccccchhhh--hheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccc
Confidence 345678776544 3344446778999999999999 9999999999999999 8887 4544443
Q ss_pred ----cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 99 ----HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 99 ----~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
|...|.+++|+| ++++|++++.||.|++||. .......+..|...|.+++|+|++++|++++.||.|++||++
T Consensus 103 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 103 SSGKTTNQVTCLAWSH-DGNSIVTGVENGELRLWNK--TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI 179 (425)
T ss_dssp -----CBCEEEEEECT-TSSEEEEEETTSCEEEEET--TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred cccCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEeC--CCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence 677999999999 9999999999999999993 334466678899999999999999999999999999999986
Q ss_pred CCCcc-----------------------------------------------------cceeeccCCCCCeeEEEecCCC
Q 019847 175 KMSSS-----------------------------------------------------KSLHRFTDHCGGVKALAWSPHQ 201 (335)
Q Consensus 175 ~~~~~-----------------------------------------------------~~~~~~~~~~~~v~~~~~~~~~ 201 (335)
+.... ..+..+..|...|.+++|+|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 259 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN 259 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence 54211 1123445688899999999999
Q ss_pred CcEEEEecCCCCCeEEEEECCCCceEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC
Q 019847 202 VNVLATGGGREDGCIKIWNVQKGTCIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 202 ~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 280 (335)
..++ +++ .|+.|++||+++++.+..+. +...+.+++|+|++ .++++ +.|+.|++||+.+++.+..+..|
T Consensus 260 ~~l~-~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~------~~d~~i~i~d~~~~~~~~~~~~~ 329 (425)
T 1r5m_A 260 KLLL-SAS--DDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISC------SMDGSVRLWSLKQNTLLALSIVD 329 (425)
T ss_dssp TEEE-EEE--TTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEE------ETTSEEEEEETTTTEEEEEEECT
T ss_pred CEEE-EEc--CCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEE------eCCCcEEEEECCCCcEeEecccC
Confidence 7554 444 79999999999998888886 46689999999999 66666 67999999999999999999999
Q ss_pred CCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 281 NSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 281 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
...|.+++|+|++++|++++.||.|++|++....
T Consensus 330 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 330 GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 9999999999999999999999999999998766
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=278.32 Aligned_cols=247 Identities=13% Similarity=0.252 Sum_probs=207.0
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce-----------eEeeecccc------------cceeEeeecCCC
Q 019847 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK-----------LVRNLEGHH------------RRVATSSWNHWN 112 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~ 112 (335)
.+.+.|++++|+|++++||+|+.||.|++||+.+++ ....+.+|. ..|.+++|+| +
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~-~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP-Q 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC-C
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC-C
Confidence 357899999999999999999999999999999876 577888898 8899999999 6
Q ss_pred C--CEEEEeeCCCcEEEEecccCCee---------------------------------------eEEeecCCCCEEEEE
Q 019847 113 G--HILTSGSKDKSIINHDVRVSNNV---------------------------------------TSCIKAHSGEVCGLK 151 (335)
Q Consensus 113 ~--~~l~~~~~dg~i~~~d~~~~~~~---------------------------------------~~~~~~~~~~i~~~~ 151 (335)
+ ..|++++.|+.|++||+...... .....+|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 6 79999999999999999753321 122357999999999
Q ss_pred eecCCCEEEEEeCCCeEEEEEccCCCccccee-------eccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC
Q 019847 152 WSNEGNLLASGGDDNVVRIWERSKMSSSKSLH-------RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224 (335)
Q Consensus 152 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 224 (335)
|+|++++|++| .|+.|++||++... ..+. .+.+|...|.+++|+|++..++++++ .||.|++||++++
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITD--RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS--SKGTIRLCDMRAS 259 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEE--EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE--TTSCEEEEETTTC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCC--ceeeeeecccccccccCcceEEEEECCCCCcEEEEEe--CCCeEEEEECcCC
Confidence 99999999998 79999999987422 2222 36689999999999999856777776 8999999999998
Q ss_pred ce----EEEeecCC-------------cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC-CceeecccCCCCc---
Q 019847 225 TC----IHGIDAKA-------------QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN-MTKVGELQSSNSR--- 283 (335)
Q Consensus 225 ~~----~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~--- 283 (335)
+. +..+..+. .+.+++|+|++++++++ +. +.|++||+++ ++++..+..|...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~------~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~ 332 (447)
T 3dw8_B 260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTR------DY-LSVKVWDLNMENRPVETYQVHEYLRSK 332 (447)
T ss_dssp SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEE------ES-SEEEEEETTCCSSCSCCEESCGGGTTT
T ss_pred ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEe------eC-CeEEEEeCCCCccccceeecccccccc
Confidence 86 66676553 79999999999999877 55 9999999997 8888888888642
Q ss_pred ------------eeEeEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 019847 284 ------------ILDLSQSPDGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 284 ------------i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
+..++|+|++++|++|+.||.|++||+..++.
T Consensus 333 l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 333 LCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp HHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred ccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 23489999999999999999999999987653
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-39 Score=268.18 Aligned_cols=253 Identities=13% Similarity=0.256 Sum_probs=209.4
Q ss_pred eecCCCCCceEEEEcCCCCEEE-EEEC---CCcEEEEeCCCceeEeee-cccccceeEeeecCCC--CCEEEEeeCCCcE
Q 019847 53 QVPGEDDYPTSVSWSHDAKTLA-VGYM---DSKLQLWDAETSKLVRNL-EGHHRRVATSSWNHWN--GHILTSGSKDKSI 125 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~-~~~~---dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i 125 (335)
.+.+|...|.+++|+|+++.++ +|+. ||.|++||+.+++..... ..|...|.+++|+|.. +.+|++++.||.|
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 3457999999999999996655 5555 899999999988765443 3688999999999932 7999999999999
Q ss_pred EEEecccCCeeeEEeecCCCCEEEEE------eecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCC----CCeeEE
Q 019847 126 INHDVRVSNNVTSCIKAHSGEVCGLK------WSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHC----GGVKAL 195 (335)
Q Consensus 126 ~~~d~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~v~~~ 195 (335)
++||+.+.......+.+|...|.+++ |+|++++|++++.||.|++||++.... .+..+..|. ..+.++
T Consensus 93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD--PVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS--CSEEECCCTTSCCCCEEEE
T ss_pred EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC--cceeccccCCCCCCceEEE
Confidence 99999977746777889999999995 467899999999999999999987541 344444333 378888
Q ss_pred E----ecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCC---CCceeeeeeeeeeecCCCeEEEEEC
Q 019847 196 A----WSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNR---HHKEILSGHGFSASGDGNKLCLWKY 268 (335)
Q Consensus 196 ~----~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~i~d~ 268 (335)
+ |+|++.. +++++ .|+.|++||+++++......+...+.+++|+| ++..++++ +.|+.|++||+
T Consensus 171 ~~~~~~~~~~~~-l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~------~~dg~i~i~d~ 241 (357)
T 3i2n_A 171 AFGNAYNQEERV-VCAGY--DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVAT------SLEGKFHVFDM 241 (357)
T ss_dssp EEECCCC-CCCE-EEEEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEE------ESTTEEEEEEE
T ss_pred EEEeccCCCCCE-EEEEc--cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEE------CCCCeEEEEeC
Confidence 8 7788864 45544 79999999999999888878888999999999 89988887 67999999999
Q ss_pred CCCceeeccc-----CCCCceeEeEEcCCCC-EEEEEeCCCcEEEEecCCCCCC
Q 019847 269 PNMTKVGELQ-----SSNSRILDLSQSPDGL-TVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 269 ~~~~~~~~~~-----~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
++++....+. .|...|++++|+|+++ +|++++.||.|++||+..+...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 8877766555 8999999999999998 8999999999999999876433
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=287.03 Aligned_cols=252 Identities=19% Similarity=0.294 Sum_probs=214.9
Q ss_pred EeecCCCCCceEEEEcCCC-CEEEEEECCCcEEEEeCCCc-----eeEeeecccccceeEeeecCCCCCEEEEeeCCCcE
Q 019847 52 LQVPGEDDYPTSVSWSHDA-KTLAVGYMDSKLQLWDAETS-----KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 125 (335)
..+.+|.+.|++++|+|++ ++|++|+.||+|++|++.+. .....+.+|...|.+++|+| ++++|++|+.||.|
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGEL 454 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC-CCCEEEEEeCCCcE
Confidence 3567999999999999864 79999999999999999753 34567889999999999999 99999999999999
Q ss_pred EEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCC-cE
Q 019847 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQV-NV 204 (335)
Q Consensus 126 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~ 204 (335)
++||+.++.. ...+.+|...|.+++|+|++++|++++.|++|++||+.............+|...|.+++|+|++. .+
T Consensus 455 ~vwd~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 455 RLWDLAAGVS-TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp EEEETTTTEE-EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred EEEECCCCcc-eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence 9999986554 566789999999999999999999999999999999764322222223357888999999999873 46
Q ss_pred EEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCc
Q 019847 205 LATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSR 283 (335)
Q Consensus 205 ~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 283 (335)
+++++ .|+.|++||+++++....+.. ...+.+++|+|++++++++ +.|+.|++||+.+++.+..+..+ ..
T Consensus 534 l~s~s--~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg------~~Dg~i~iwd~~~~~~~~~~~~~-~~ 604 (694)
T 3dm0_A 534 IVSAS--WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG------GKDGVVLLWDLAEGKKLYSLEAN-SV 604 (694)
T ss_dssp EEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE------ETTSBCEEEETTTTEEEECCBCS-SC
T ss_pred EEEEe--CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE------eCCCeEEEEECCCCceEEEecCC-Cc
Confidence 66666 899999999999998888875 4689999999999999988 77999999999999998887654 56
Q ss_pred eeEeEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 019847 284 ILDLSQSPDGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 284 i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
|.+++|+|++.+|++++ |+.|++||+.....
T Consensus 605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAAT-EHGIKIWDLESKSI 635 (694)
T ss_dssp EEEEEECSSSSEEEEEE-TTEEEEEETTTTEE
T ss_pred EEEEEEcCCCcEEEEEc-CCCEEEEECCCCCC
Confidence 99999999998887765 56699999987653
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-38 Score=290.16 Aligned_cols=305 Identities=10% Similarity=0.096 Sum_probs=231.6
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
+...+.+++|+++ .+++++.|+.|++|+..+.+... . ..|...|.+++|+| +++|++++.|+.|++||+++++.
T Consensus 16 h~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~--~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~ 91 (902)
T 2oaj_A 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI--K-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV 91 (902)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE--E-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred CCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE--E-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence 3556889999984 46667789999999988766432 2 34788999999999 88999999999999999999998
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee----------EEeecCCCCEEEEEeecC-CCEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT----------SCIKAHSGEVCGLKWSNE-GNLLAS 161 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~----------~~~~~~~~~i~~~~~~~~-~~~l~~ 161 (335)
+..+. |...|++++|+| ++++|++|+.||.|++||+++..... ....+|.+.|.+++|+|+ +..+++
T Consensus 92 ~~~~~-~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~ 169 (902)
T 2oaj_A 92 LTTVF-VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI 169 (902)
T ss_dssp EEEEE-CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE
T ss_pred EEEEc-CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE
Confidence 88886 778999999999 99999999999999999998655321 223578999999999995 578999
Q ss_pred EeCCCeEEEEEccCCCcccceeeccCC------------------CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC
Q 019847 162 GGDDNVVRIWERSKMSSSKSLHRFTDH------------------CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 162 ~~~dg~i~iwd~~~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 223 (335)
|+.||.| +||++... .+..+..| ...|.+++|+|++. ++++++ .|+.|++||+++
T Consensus 170 g~~dg~v-lWd~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs--~Dg~i~lWd~~~ 242 (902)
T 2oaj_A 170 SYEYVTL-TYSLVENE---IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIH--EDNSLVFWDANS 242 (902)
T ss_dssp ECSSCEE-EEETTTTE---EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEE--TTCCEEEEETTT
T ss_pred EeCCCcE-EEECCCCc---eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEE--CCCeEEEEECCC
Confidence 9999999 99988743 34444333 57799999999986 555555 899999999999
Q ss_pred CceEEE--ee-----------------cCCcEeEEEeC----CCC-ceeeeee---------------------------
Q 019847 224 GTCIHG--ID-----------------AKAQICGLEWN----RHH-KEILSGH--------------------------- 252 (335)
Q Consensus 224 ~~~~~~--~~-----------------~~~~~~~~~~~----~~~-~~~~~~~--------------------------- 252 (335)
++++.. +. +...|.+++|+ |++ ..+++|.
T Consensus 243 g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~ 322 (902)
T 2oaj_A 243 GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYE 322 (902)
T ss_dssp CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHH
T ss_pred CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchh
Confidence 987653 21 12368899995 443 3333330
Q ss_pred -------------------------------------------eeeeecCCCeEEEEECCCCceeec-------------
Q 019847 253 -------------------------------------------GFSASGDGNKLCLWKYPNMTKVGE------------- 276 (335)
Q Consensus 253 -------------------------------------------~~~~~~~~~~i~i~d~~~~~~~~~------------- 276 (335)
.+++.+.|+.|++||+.++.....
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~ 402 (902)
T 2oaj_A 323 GMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRP 402 (902)
T ss_dssp HHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTT
T ss_pred hhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCC
Confidence 012234468899999877643321
Q ss_pred ----------------------------ccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc---------
Q 019847 277 ----------------------------LQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS--------- 319 (335)
Q Consensus 277 ----------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~--------- 319 (335)
+.+|...+.+++|+|++++|++|+.||+|++||+..+......
T Consensus 403 ~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~ 482 (902)
T 2oaj_A 403 LATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRT 482 (902)
T ss_dssp BEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHH
T ss_pred CeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhh
Confidence 2334445556677899999999999999999999987432211
Q ss_pred --cccccccccceec
Q 019847 320 --VSHLAGLVSLKTS 332 (335)
Q Consensus 320 --~~~~~~i~~~~~~ 332 (335)
.+|...|.++.|+
T Consensus 483 ~~~~h~~~V~svafs 497 (902)
T 2oaj_A 483 LNKAKELAVDKISFA 497 (902)
T ss_dssp TTCSSSCCEEEEEEE
T ss_pred cCCCCCCceeEEEec
Confidence 1567778888775
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=263.50 Aligned_cols=288 Identities=15% Similarity=0.182 Sum_probs=229.8
Q ss_pred cccccceeeeecCC-----ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC
Q 019847 14 MEDYYSKVIDWGRN-----NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE 88 (335)
Q Consensus 14 ~~~~~~~~~~~~~~-----~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 88 (335)
.+...+.+++|+++ .+++++.|+.|++||+++........+.+|...|.+++|+|++++|++++.||.|++||++
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~ 116 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS 116 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC
Confidence 45678999999985 3666678999999999984333335566899999999999999999999999999999999
Q ss_pred CceeEeeecccccceeEeee--cCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC
Q 019847 89 TSKLVRNLEGHHRRVATSSW--NHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN 166 (335)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 166 (335)
+++.+. +..|...|.+++| +| ++.+|++++.||.|++||+++.+. ...+..+ ..+.++.+.+ ..+++++.++
T Consensus 117 ~~~~~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~-~~~~~~~~~~--~~~~~~~~~~ 190 (368)
T 3mmy_A 117 SNQAIQ-IAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNP-MMVLQLP-ERCYCADVIY--PMAVVATAER 190 (368)
T ss_dssp TTEEEE-EEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSC-SEEEECS-SCEEEEEEET--TEEEEEEGGG
T ss_pred CCCcee-eccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcE-EEEEecC-CCceEEEecC--CeeEEEeCCC
Confidence 998776 5569999999999 77 889999999999999999997665 4444444 4666666664 4888899999
Q ss_pred eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCc---EEEEecCCCCCeEEEEECCCC---ceEEEeecCC------
Q 019847 167 VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN---VLATGGGREDGCIKIWNVQKG---TCIHGIDAKA------ 234 (335)
Q Consensus 167 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~g~~d~~i~i~d~~~~---~~~~~~~~~~------ 234 (335)
.+++|+++..... .......+...+.++.+.++... .+++++ .|+.|++||++.. +.+..+..+.
T Consensus 191 ~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (368)
T 3mmy_A 191 GLIVYQLENQPSE-FRRIESPLKHQHRCVAIFKDKQNKPTGFALGS--IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT 267 (368)
T ss_dssp CEEEEECSSSCEE-EEECCCSCSSCEEEEEEEECTTSCEEEEEEEE--TTSEEEEEESSCSCHHHHSEEEECSEEC----
T ss_pred cEEEEEeccccch-hhhccccccCCCceEEEcccCCCCCCeEEEec--CCCcEEEEecCCCCccccceeeeeeecccccc
Confidence 9999998864321 11122233445666666555432 255555 8999999999987 4555665543
Q ss_pred -------cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEE
Q 019847 235 -------QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRF 307 (335)
Q Consensus 235 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 307 (335)
.+.+++|+|++++++++ +.||.|++||+.+++++..+..|...|++++|+|++++|++++.|+..+.
T Consensus 268 ~~~~~~~~v~~~~~sp~~~~l~s~------~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~ 341 (368)
T 3mmy_A 268 SAPQDIYAVNGIAFHPVHGTLATV------GSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKG 341 (368)
T ss_dssp CCCEEECCEEEEEECTTTCCEEEE------ETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred cccccccceEEEEEecCCCEEEEE------ccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccc
Confidence 59999999999999888 77999999999999999999999999999999999999999999998777
Q ss_pred EecCCCCCC
Q 019847 308 WEAFGPSGD 316 (335)
Q Consensus 308 w~~~~~~~~ 316 (335)
|++...+..
T Consensus 342 ~~~~~~~~~ 350 (368)
T 3mmy_A 342 HEFYNPQKK 350 (368)
T ss_dssp GGGCCTTSC
T ss_pred ccccCCCcc
Confidence 776655443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=264.80 Aligned_cols=260 Identities=10% Similarity=0.116 Sum_probs=217.8
Q ss_pred cCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce---eEeeecccccceeEeeecCCCCC-EEEEeeCCCcEEEEec
Q 019847 55 PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK---LVRNLEGHHRRVATSSWNHWNGH-ILTSGSKDKSIINHDV 130 (335)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~ 130 (335)
.+|...|++++|+|++++|++++.||.|++|++.+++ ....+..|...|.+++|+| +++ +|++|+.||.|++||+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEECS
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEEe
Confidence 5799999999999999999999999999999998876 3455567999999999999 899 9999999999999999
Q ss_pred -ccCCeeeEEeec--CCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCc------ccceeeccCCCCCeeEEEecCCC
Q 019847 131 -RVSNNVTSCIKA--HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSS------SKSLHRFTDHCGGVKALAWSPHQ 201 (335)
Q Consensus 131 -~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~ 201 (335)
.+... ..+.. |...|.+++|+| +++|++++.|+.|++||++.... .+.+..+. |...+.+++|+|++
T Consensus 87 ~~~~~~--~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 87 IGSPSF--QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR 162 (342)
T ss_dssp SSSSSE--EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE
T ss_pred ccCCce--EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc
Confidence 76543 55677 999999999999 99999999999999999875100 22233444 88899999999986
Q ss_pred CcEEEEecCCCCCeEEEEECCC-CceE---EEeecCCcEeEEEeCC-CCceeeeeeeeeeecCCCeEEEEECCCC-----
Q 019847 202 VNVLATGGGREDGCIKIWNVQK-GTCI---HGIDAKAQICGLEWNR-HHKEILSGHGFSASGDGNKLCLWKYPNM----- 271 (335)
Q Consensus 202 ~~~~~~~~g~~d~~i~i~d~~~-~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~d~~~~----- 271 (335)
+++++ .|+.|++||+++ +... ....+...+.+++|+| +++.++++ +.++.+++|+++..
T Consensus 163 ---l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~------~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 163 ---LIVGM--NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS------SIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp ---EEEEE--STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE------ETTSEEEEEECCTTCCSTT
T ss_pred ---EEEEe--CCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEE------ecCCcEEEEEEcCCCcccc
Confidence 44444 799999999998 5432 2233566899999999 99998887 67999999999887
Q ss_pred -ceeecccCCCC---------ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcccc-ccccccce
Q 019847 272 -TKVGELQSSNS---------RILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSH-LAGLVSLK 330 (335)
Q Consensus 272 -~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~~~i~~~~ 330 (335)
+....+..|.. .|++++|+|++++|++++.||.|++||+..++.......| ...|.++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~ 301 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA 301 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec
Confidence 77777777755 8999999999999999999999999999988776666676 77666654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=266.57 Aligned_cols=284 Identities=12% Similarity=0.140 Sum_probs=229.4
Q ss_pred ccceeeeecCC-ceEEEecCCeEEEEEecCCc---eeeEEee--------------------------------------
Q 019847 17 YYSKVIDWGRN-NVLAVALGPVLFLWKWENGK---VKKLLQV-------------------------------------- 54 (335)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~---~~~~~~~-------------------------------------- 54 (335)
.++.+++|+++ .+++++.++.|++||+.+++ .......
T Consensus 5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 46778889874 58888889999999999988 3332221
Q ss_pred --------------cCCCCCceEEEEcCCCCEE-EEEECCCcEEEEeCC--CceeEeeec--ccccceeEeeecCCCCCE
Q 019847 55 --------------PGEDDYPTSVSWSHDAKTL-AVGYMDSKLQLWDAE--TSKLVRNLE--GHHRRVATSSWNHWNGHI 115 (335)
Q Consensus 55 --------------~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~~ 115 (335)
++|...|.+++|+|++++| ++|+.||.|++||+. +++.+..+. .|...|.+++|+| ++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~ 163 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTT 163 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSE
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCE
Confidence 1344579999999999996 888899999999999 888888876 5668999999999 9999
Q ss_pred EEEeeCCCcEEEEecccCCee---eEEeecCCCCEEEEEeecC---CCEEEEEeCCCeEEEEEccCCCcccceee-ccCC
Q 019847 116 LTSGSKDKSIINHDVRVSNNV---TSCIKAHSGEVCGLKWSNE---GNLLASGGDDNVVRIWERSKMSSSKSLHR-FTDH 188 (335)
Q Consensus 116 l~~~~~dg~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~ 188 (335)
|++++.+|.+++|++.+.... ...+.+|...|.+++|+|+ +++|++++.|+.|++||++... .+.. +.+|
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~~h 240 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF---IVDKWLFGH 240 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT---CEEEECCCC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc---eeeeeecCC
Confidence 999999999999999865532 2356789999999999999 9999999999999999987643 3444 5589
Q ss_pred CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec--------------------------CCcEeEEEeC
Q 019847 189 CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA--------------------------KAQICGLEWN 242 (335)
Q Consensus 189 ~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--------------------------~~~~~~~~~~ 242 (335)
...|.+++|+ ++. ++++++ .|+.|++||+++++++..+.. ...+..+.|+
T Consensus 241 ~~~v~~~~~s-d~~-~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 241 KHFVSSICCG-KDY-LLLSAG--GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp SSCEEEEEEC-STT-EEEEEE--SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred CCceEEEEEC-CCC-EEEEEe--CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 9999999999 775 555555 899999999999998887753 2358899999
Q ss_pred CCCceeeeeeeeeeecCCCeEEEEEC--CCC---ceeecccCCCCceeEeEEcCCCCEEEEEeC------CCcEEEEecC
Q 019847 243 RHHKEILSGHGFSASGDGNKLCLWKY--PNM---TKVGELQSSNSRILDLSQSPDGLTVATAGA------DETIRFWEAF 311 (335)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~i~d~--~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~v~iw~~~ 311 (335)
|++++++++. ..++.|++|++ .++ +.+..+..| ..|.+++|+|++.++++++. +..|.+|.+.
T Consensus 317 ~~~~~l~~~~-----~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 317 KNLPFVAFFV-----EATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp SSSSEEEEEE-----TTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred CCCCEEEEEE-----CCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 9999998772 37999999999 555 667777777 78999999996544444443 5568999887
Q ss_pred CCC
Q 019847 312 GPS 314 (335)
Q Consensus 312 ~~~ 314 (335)
...
T Consensus 391 ~~~ 393 (450)
T 2vdu_B 391 LNE 393 (450)
T ss_dssp TTT
T ss_pred cCC
Confidence 543
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-39 Score=268.48 Aligned_cols=265 Identities=16% Similarity=0.239 Sum_probs=217.2
Q ss_pred cCCCCCceEEEEcCC----CCEEEEEECCCcEEEEeCCCceeEeeecc-----cccceeEeeecCCC----CCEEEEeeC
Q 019847 55 PGEDDYPTSVSWSHD----AKTLAVGYMDSKLQLWDAETSKLVRNLEG-----HHRRVATSSWNHWN----GHILTSGSK 121 (335)
Q Consensus 55 ~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~~~v~~~~~~~~~----~~~l~~~~~ 121 (335)
.+|...|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+| + +.+|++|+.
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY-DSNTSHPLLAVAGS 93 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEE-CTTTCCEEEEEEET
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEecc-CCCCCCCEEEEecC
Confidence 589999999999984 55677777788999999998887777664 447799999999 6 679999999
Q ss_pred CCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCC
Q 019847 122 DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH 200 (335)
Q Consensus 122 dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 200 (335)
||.|++||+.+.+. ...+.+|...|.+++|+| ++++|++++.||.|++||++.......+..+..|...|.+++|+|+
T Consensus 94 dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 94 RGIIRIINPITMQC-IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172 (366)
T ss_dssp TCEEEEECTTTCCE-EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred CCEEEEEEchhceE-eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence 99999999986654 566778999999999999 9999999999999999998875433333333789999999999999
Q ss_pred CCcEEEEecCCCCCeEEEEECCCCceEEEee-----------------------------cCCcEeEEEeCCCCceeeee
Q 019847 201 QVNVLATGGGREDGCIKIWNVQKGTCIHGID-----------------------------AKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 201 ~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 251 (335)
+..+++ ++ .|+.|++||+++++....+. +...+.+++|+ +.+++++
T Consensus 173 ~~~l~~-~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 247 (366)
T 3k26_A 173 GEKIMS-CG--MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK 247 (366)
T ss_dssp SSEEEE-EE--TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE
T ss_pred CCEEEE-ec--CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE
Confidence 875555 44 79999999999876544332 45678999998 6677766
Q ss_pred eeeeeecCCCeEEEEECCCCce--------------eecccCCCCceeEeEEcCC--CCEEEEEeCCCcEEEEecCCCCC
Q 019847 252 HGFSASGDGNKLCLWKYPNMTK--------------VGELQSSNSRILDLSQSPD--GLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 252 ~~~~~~~~~~~i~i~d~~~~~~--------------~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
+.|+.|++||+.+++. +..+..|...|++++|+|+ +++|++++.||.|++||+..++.
T Consensus 248 ------~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 248 ------SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp ------CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred ------ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 7799999999987654 6777889999999999999 99999999999999999998764
Q ss_pred CC----Ccccc--ccccccceec
Q 019847 316 DE----DSVSH--LAGLVSLKTS 332 (335)
Q Consensus 316 ~~----~~~~~--~~~i~~~~~~ 332 (335)
.. ....| ...|.++.++
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~s 344 (366)
T 3k26_A 322 HKAKCTTLTHHKCGAAIRQTSFS 344 (366)
T ss_dssp GGCEEEEECCTTCCSCEEEEEEC
T ss_pred ccccceEEcccccCCceEEEEeC
Confidence 43 34444 5777777764
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=273.41 Aligned_cols=262 Identities=16% Similarity=0.170 Sum_probs=210.6
Q ss_pred cCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCCcee--EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecc
Q 019847 55 PGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAETSKL--VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR 131 (335)
Q Consensus 55 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 131 (335)
.+|...|++++|+| ++++||+|+.||.|+|||+.+++. ...+.+|...|++++|+|.++++|++|+.||+|++||++
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence 46888999999999 567999999999999999987654 445668999999999998788999999999999999997
Q ss_pred cCCeeeEEee--cCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEec
Q 019847 132 VSNNVTSCIK--AHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 132 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
... ...... .+...+.+++|+|++++|++|+.||.|++||++. +.+..+.+|...|.+++|+|+++.++++++
T Consensus 196 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~----~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s 270 (435)
T 4e54_B 196 GNI-LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG----KELWNLRMHKKKVTHVALNPCCDWFLATAS 270 (435)
T ss_dssp SCE-EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS----CBCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred CCc-eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc----ceeEEEecccceEEeeeecCCCceEEEEec
Confidence 433 222222 2344678999999999999999999999999864 346677889999999999999998998887
Q ss_pred CCCCCeEEEEECCCCceEEEe----ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCC---
Q 019847 210 GREDGCIKIWNVQKGTCIHGI----DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNS--- 282 (335)
Q Consensus 210 g~~d~~i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~--- 282 (335)
.|+.|++||+++.+....+ .+...|.+++|+|++.+++++ +.|+.|++||+.+++....+..|..
T Consensus 271 --~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~------~~D~~i~iwd~~~~~~~~~~~~~~~~~~ 342 (435)
T 4e54_B 271 --VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT------DQKSEIRVYSASQWDCPLGLIPHPHRHF 342 (435)
T ss_dssp --TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE------ESSSCEEEEESSSSSSEEEECCCCCCCC
T ss_pred --CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEE------cCCCEEEEEECCCCccceEEeccccccc
Confidence 8999999999887654333 345689999999999999987 7799999999999888777665543
Q ss_pred ---ceeEeEEcCCCCEEEEEe------------CCCcEEEEecCCCCCCCCc-cccccccccc
Q 019847 283 ---RILDLSQSPDGLTVATAG------------ADETIRFWEAFGPSGDEDS-VSHLAGLVSL 329 (335)
Q Consensus 283 ---~i~~~~~~~~~~~l~~~~------------~dg~v~iw~~~~~~~~~~~-~~~~~~i~~~ 329 (335)
.+....|+|++.+++++. .++.|++||...++..... ..|...|.++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~ 405 (435)
T 4e54_B 343 QHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSL 405 (435)
T ss_dssp SSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCE
T ss_pred ccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEE
Confidence 234557777777777664 3457999999887665543 3566666655
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=281.74 Aligned_cols=246 Identities=15% Similarity=0.114 Sum_probs=200.3
Q ss_pred CCCCceEEEEcCCC---------CEEEEE-------------------ECCCcEEEEeCCCceeE----eeeccccccee
Q 019847 57 EDDYPTSVSWSHDA---------KTLAVG-------------------YMDSKLQLWDAETSKLV----RNLEGHHRRVA 104 (335)
Q Consensus 57 ~~~~v~~~~~~~~~---------~~l~~~-------------------~~dg~i~iw~~~~~~~~----~~~~~~~~~v~ 104 (335)
+...|.+++|+|++ ++||+| +.|++|+|||+.+++.. ..+..|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 46778888888876 566664 46789999999877642 34566778999
Q ss_pred EeeecCC-----CCCEEEEeeCCCcEEEEecccCCe----------eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEE
Q 019847 105 TSSWNHW-----NGHILTSGSKDKSIINHDVRVSNN----------VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVR 169 (335)
Q Consensus 105 ~~~~~~~-----~~~~l~~~~~dg~i~~~d~~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 169 (335)
+++|+|. ++.+|++++.||+|++||+..... ....+.+|...|++++|+++ ..|++|+.||+|+
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~ 290 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVA 290 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEE
Confidence 9999993 257999999999999999976532 12356789999999999986 4899999999999
Q ss_pred EEEccCCCcccceeeccCCCCCeeEE--EecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC---CcEeEEEeCCC
Q 019847 170 IWERSKMSSSKSLHRFTDHCGGVKAL--AWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK---AQICGLEWNRH 244 (335)
Q Consensus 170 iwd~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~ 244 (335)
+||++++. .+...+.+|...|.++ .|+|++..++++++ .|++|++||++++++...+..+ ..+.+++|+|+
T Consensus 291 lWD~~~~~--~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S--~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~ 366 (524)
T 2j04_B 291 EFDLTDPE--VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVA--VDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQ 366 (524)
T ss_dssp EEETTBCS--SCSEEEECSSSCEEEEEEECCTTSCCEEEEEE--TTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETT
T ss_pred EEECCCCC--CceEEeecccccEEEEEEEcCCCCCeEEEEec--cCCeEEEEECCCCCcccccccccccCcccceEeCCC
Confidence 99998642 2345567899999999 57777646777777 8999999999988776665543 24789999999
Q ss_pred CceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 245 HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
++.++++ +.|+.|++||++++..+..+.+|.+.|++++|+|++++|++|+.||+|++|++...
T Consensus 367 ~~~l~s~------~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 367 IYSYIYS------DGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp TTEEEEE------CSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred cCeEEEe------CCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 9988876 67999999999999988888899999999999999999999999999999998654
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=263.53 Aligned_cols=275 Identities=18% Similarity=0.254 Sum_probs=231.8
Q ss_pred cccccceeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEc--CCCCEEEEEECCCcEEEEeCCCc
Q 019847 14 MEDYYSKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS--HDAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
.+...+.+++|+++ .+++++.|+.|++||+++++.. ..+.+|...|.+++|+ ++++++++|+.||.|++||+.++
T Consensus 160 ~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~ 237 (464)
T 3v7d_B 160 GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCT--HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237 (464)
T ss_dssp CCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCC
T ss_pred CCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEE--EEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCC
Confidence 35667899999975 6777889999999999998754 4566899999999998 57899999999999999999876
Q ss_pred ee-----------------------EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCE
Q 019847 91 KL-----------------------VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEV 147 (335)
Q Consensus 91 ~~-----------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i 147 (335)
+. +..+.+|...+.++. + +++++++++.||.|++||+++.+ ....+.+|...|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~v 313 (464)
T 3v7d_B 238 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDRI 313 (464)
T ss_dssp CCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCE
T ss_pred cccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCE
Confidence 52 445677888888874 4 78999999999999999998655 466678899999
Q ss_pred EEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceE
Q 019847 148 CGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI 227 (335)
Q Consensus 148 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~ 227 (335)
.+++|+|+++++++|+.||.|++||+++ .+.+..+.+|...|.++.|++ ..+++++ .||.|++||+++++..
T Consensus 314 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~---~~~~~~~~~h~~~v~~~~~~~---~~l~s~s--~dg~v~vwd~~~~~~~ 385 (464)
T 3v7d_B 314 YSTIYDHERKRCISASMDTTIRIWDLEN---GELMYTLQGHTALVGLLRLSD---KFLVSAA--ADGSIRGWDANDYSRK 385 (464)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECS---SEEEEEE--TTSEEEEEETTTCCEE
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCC---CcEEEEEeCCCCcEEEEEEcC---CEEEEEe--CCCcEEEEECCCCcee
Confidence 9999999999999999999999999876 456778889999999999984 3556655 8999999999999888
Q ss_pred EEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeec-ccCCCCceeEeEEcCCCCEEEEEeCCCcEE
Q 019847 228 HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE-LQSSNSRILDLSQSPDGLTVATAGADETIR 306 (335)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 306 (335)
........+..++|+|++..++++ + |+.|++||+.+++.+.. +..|...|.+++|+ +..++++++.||.+.
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~l~~~------~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~ 457 (464)
T 3v7d_B 386 FSYHHTNLSAITTFYVSDNILVSG------S-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSF 457 (464)
T ss_dssp EEEECTTCCCEEEEEECSSEEEEE------E-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred eeecCCCCccEEEEEeCCCEEEEe------c-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEE
Confidence 888778888899999999998876 4 89999999999999886 67888999999997 344556666777665
Q ss_pred EEec
Q 019847 307 FWEA 310 (335)
Q Consensus 307 iw~~ 310 (335)
+|-+
T Consensus 458 i~~l 461 (464)
T 3v7d_B 458 LEIL 461 (464)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=272.06 Aligned_cols=263 Identities=18% Similarity=0.241 Sum_probs=209.0
Q ss_pred EEEecCCceeeEEee-cCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCC---ce---eEeeecccccceeEeeecCC
Q 019847 40 LWKWENGKVKKLLQV-PGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAET---SK---LVRNLEGHHRRVATSSWNHW 111 (335)
Q Consensus 40 vw~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~---~~---~~~~~~~~~~~v~~~~~~~~ 111 (335)
.|+. +++. ...+ .+|...|++++|+| ++++|++|+.||.|++||+.+ +. ....+ .|...|.+++|+|
T Consensus 47 ~w~~-~g~~--~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~- 121 (437)
T 3gre_A 47 MGNL-RGKL--IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIP- 121 (437)
T ss_dssp GGGC-CCCE--EEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECT-
T ss_pred cccc-cceE--EeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeC-
Confidence 4774 3443 3455 78999999999999 999999999999999999876 33 22222 4899999999999
Q ss_pred CCCEEEEeeCCCcEEEEecc---cCCeeeEEee----------c--CCCCEEEEE--eecCCCEEEEEeCCCeEEEEEcc
Q 019847 112 NGHILTSGSKDKSIINHDVR---VSNNVTSCIK----------A--HSGEVCGLK--WSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 112 ~~~~l~~~~~dg~i~~~d~~---~~~~~~~~~~----------~--~~~~i~~~~--~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
++++|++++.||.|++||++ .+.. ..... . +...+.++. +++++++|++++.||.|++||++
T Consensus 122 ~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 200 (437)
T 3gre_A 122 NFDAFAVSSKDGQIIVLKVNHYQQESE-VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR 200 (437)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEETTE-EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT
T ss_pred CCCEEEEEeCCCEEEEEEeccccCCce-eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999995 3332 22111 1 556677777 55789999999999999999988
Q ss_pred CCCcccceeeccC--CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee--cCCcEeEEEeC----CCCc
Q 019847 175 KMSSSKSLHRFTD--HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID--AKAQICGLEWN----RHHK 246 (335)
Q Consensus 175 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~----~~~~ 246 (335)
.. +.+..+.. |...|.+++|+|++. ++++++ .||.|++||+++++++..+. ++.++.+++|+ |++.
T Consensus 201 ~~---~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~ 274 (437)
T 3gre_A 201 TL---ERLQIIENSPRHGAVSSICIDEECC-VLILGT--TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSV 274 (437)
T ss_dssp TC---CEEEEEECCGGGCCEEEEEECTTSC-EEEEEE--TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEE
T ss_pred CC---eeeEEEccCCCCCceEEEEECCCCC-EEEEEc--CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCcc
Confidence 74 44666666 789999999999986 555554 89999999999999998874 45689999555 5677
Q ss_pred eeeeeeeeeeecCCCeEEEEECCCCceeecccC--------------------------CCCceeEeEEcCCCCEEEEEe
Q 019847 247 EILSGHGFSASGDGNKLCLWKYPNMTKVGELQS--------------------------SNSRILDLSQSPDGLTVATAG 300 (335)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--------------------------~~~~i~~~~~~~~~~~l~~~~ 300 (335)
+++++ +.|+.|++||+.+++.+..+.+ |...|++++|+ ++++|++|+
T Consensus 275 ~l~s~------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~ 347 (437)
T 3gre_A 275 IVVGG------SSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE 347 (437)
T ss_dssp EEEEE------STTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG
T ss_pred EEEEE------cCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC
Confidence 77776 7899999999999887666543 55568888888 778999999
Q ss_pred CCCcEEEEecCCCCCCCCccc
Q 019847 301 ADETIRFWEAFGPSGDEDSVS 321 (335)
Q Consensus 301 ~dg~v~iw~~~~~~~~~~~~~ 321 (335)
.||.|++||+..++......+
T Consensus 348 ~d~~i~~wd~~~~~~~~~~~~ 368 (437)
T 3gre_A 348 ATSSIVMFSLNELSSSKAVIS 368 (437)
T ss_dssp GGTEEEEEETTCGGGCEEEEC
T ss_pred CCCeEEEEECCCcccceEEec
Confidence 999999999998776654444
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=282.36 Aligned_cols=251 Identities=22% Similarity=0.344 Sum_probs=212.0
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC--CceeEeeecccccceeEeeecCCC--CCEEEEeeCCCcEEEE
Q 019847 53 QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE--TSKLVRNLEGHHRRVATSSWNHWN--GHILTSGSKDKSIINH 128 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~ 128 (335)
.+.+|.+.|++++|+|++++|++|+.||.|++||+. +++.+..+.+|..+|++++|+| + +++|++|+.||.|++|
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEE
Confidence 456899999999999999999999999999999998 5677888999999999999998 5 8999999999999999
Q ss_pred ecccCCe-eeEEeecCCCCEEEEEeecC--CCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCC-----
Q 019847 129 DVRVSNN-VTSCIKAHSGEVCGLKWSNE--GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH----- 200 (335)
Q Consensus 129 d~~~~~~-~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----- 200 (335)
|+.++.. ....+..|...|.+++|+|+ ++++++|+.||.|++||++.... .....+.+|...|.+++|+|.
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~-~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-TSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC-CCCEEEECCSSCEEEEEECCCC----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC-cceeEeecCCCceEEEEecCcccccc
Confidence 9987642 45567789999999999998 99999999999999999987543 234456779999999999994
Q ss_pred --------CCcEEEEecCCCCCeEEEEECCCCc----eEEEee-cCCcEeEEEeCCC---CceeeeeeeeeeecCCCeEE
Q 019847 201 --------QVNVLATGGGREDGCIKIWNVQKGT----CIHGID-AKAQICGLEWNRH---HKEILSGHGFSASGDGNKLC 264 (335)
Q Consensus 201 --------~~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~ 264 (335)
+. ++++++ .||.|++||++++. ....+. +..++.+++|+|+ +..++++ +.||.|+
T Consensus 162 ~~~~~~~d~~-~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~------s~Dg~I~ 232 (753)
T 3jro_A 162 GEHNGTKESR-KFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV------SQDRTCI 232 (753)
T ss_dssp -----CGGGC-CEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE------ESSSCEE
T ss_pred cccccCCCCC-EEEEEE--CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE------ecCCEEE
Confidence 54 555555 79999999998873 444444 3568999999999 8888887 7799999
Q ss_pred EEECCCCc-----eeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 265 LWKYPNMT-----KVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 265 i~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
+||+.+++ .......|...|++++|+|++++|++++.||.|++|++....
T Consensus 233 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99998864 344455688899999999999999999999999999998543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=255.75 Aligned_cols=248 Identities=20% Similarity=0.329 Sum_probs=208.8
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCC--CCEEEEEECCCcEEEEeCCCc
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHD--AKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~ 90 (335)
+...+.+++|+++ .+++++.|+.|++||++.+.......+.+|...|++++|+|+ +++|++|+.||.|++||+.++
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 89 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 89 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT
T ss_pred CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC
Confidence 5567899999984 466667899999999987666666778899999999999987 999999999999999999998
Q ss_pred e--eEeeecccccceeEeeecCCC--CCEEEEeeCCCcEEEEecccCCe-eeEEeecCCCCEEEEEeec-----------
Q 019847 91 K--LVRNLEGHHRRVATSSWNHWN--GHILTSGSKDKSIINHDVRVSNN-VTSCIKAHSGEVCGLKWSN----------- 154 (335)
Q Consensus 91 ~--~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~----------- 154 (335)
+ .+..+..|...|.+++|+| + +.+|++++.|+.|++||++.... ....+..|...|.+++|+|
T Consensus 90 ~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 168 (379)
T 3jrp_A 90 RWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 168 (379)
T ss_dssp EEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---------
T ss_pred ceeEeeeecCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccC
Confidence 7 7777888999999999999 6 89999999999999999987643 3445678999999999999
Q ss_pred --CCCEEEEEeCCCeEEEEEccCCCcc-cceeeccCCCCCeeEEEecCCC--CcEEEEecCCCCCeEEEEECCCCc---e
Q 019847 155 --EGNLLASGGDDNVVRIWERSKMSSS-KSLHRFTDHCGGVKALAWSPHQ--VNVLATGGGREDGCIKIWNVQKGT---C 226 (335)
Q Consensus 155 --~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~g~~d~~i~i~d~~~~~---~ 226 (335)
++++|++++.||.|++||++..... .....+.+|...|.+++|+|++ ..++++++ .||.|++||++++. .
T Consensus 169 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~ 246 (379)
T 3jrp_A 169 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDNEQGPWK 246 (379)
T ss_dssp -CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--TTSCEEEEEESSTTSCCE
T ss_pred CCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe--CCCEEEEEeCCCCCccce
Confidence 6999999999999999999865432 3456778899999999999993 35666665 89999999999874 2
Q ss_pred EEEee---cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC
Q 019847 227 IHGID---AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM 271 (335)
Q Consensus 227 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~ 271 (335)
...+. +...+.+++|+|++++++++ +.||.|++|++...
T Consensus 247 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~------~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 247 KTLLKEEKFPDVLWRASWSLSGNVLALS------GGDNKVTLWKENLE 288 (379)
T ss_dssp EEESSSSCCSSCEEEEEECSSSCCEEEE------ESSSSEEEEEEEET
T ss_pred eeeeccccCCCcEEEEEEcCCCCEEEEe------cCCCcEEEEeCCCC
Confidence 22222 45689999999999999887 66999999998743
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=258.29 Aligned_cols=255 Identities=18% Similarity=0.358 Sum_probs=217.9
Q ss_pred ecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccC
Q 019847 54 VPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVS 133 (335)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 133 (335)
..+|...|.++++ ++++|++|+.||.|++||+.+++....+.+|...|.+++| ++++|++|+.||.|++||++++
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSC
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCC
Confidence 3456778888876 8999999999999999999999999999999999999999 6789999999999999999876
Q ss_pred CeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC
Q 019847 134 NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213 (335)
Q Consensus 134 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 213 (335)
+. ...+..|...|.+++|++ +.+++|+.||.|++||++..........+.+|...|.+++| ++. .+++++ .|
T Consensus 204 ~~-~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~s~~--~d 275 (435)
T 1p22_A 204 EM-LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK-YIVSAS--GD 275 (435)
T ss_dssp CE-EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETT-EEEEEE--TT
T ss_pred cE-EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCC-EEEEEe--CC
Confidence 64 666788999999999974 59999999999999999876655445777889999999999 444 555555 79
Q ss_pred CeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCC
Q 019847 214 GCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 214 ~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
|.|++||+++++.+..+.. ...+.++.+ ++..++++ +.|+.|++||+++++.+..+.+|...|.+++| +
T Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g------~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~ 345 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSG------SSDNTIRLWDIECGACLRVLEGHEELVRCIRF--D 345 (435)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEE------ETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--C
T ss_pred CeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEE------eCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--c
Confidence 9999999999999988875 457888888 45677766 77999999999999999999999999999999 7
Q ss_pred CCEEEEEeCCCcEEEEecCCCC---------CCCCcccccccccccee
Q 019847 293 GLTVATAGADETIRFWEAFGPS---------GDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 293 ~~~l~~~~~dg~v~iw~~~~~~---------~~~~~~~~~~~i~~~~~ 331 (335)
+.+|++|+.||.|++||+.... .......|...|.++.+
T Consensus 346 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 393 (435)
T 1p22_A 346 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF 393 (435)
T ss_dssp SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe
Confidence 7899999999999999997655 22334567777777665
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=254.49 Aligned_cols=267 Identities=19% Similarity=0.377 Sum_probs=217.5
Q ss_pred EEeecCCCCCce--EEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecc-cccceeEeeecCCCCCEEEEeeCCCcEEE
Q 019847 51 LLQVPGEDDYPT--SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEG-HHRRVATSSWNHWNGHILTSGSKDKSIIN 127 (335)
Q Consensus 51 ~~~~~~~~~~v~--~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 127 (335)
.+..++|...+. +++|+ +..+++++.||.|++||+.+++....+.. |...|.+++|+| ++++|++|+.||.|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~i 160 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSH-DGSFLSVGLGNGLVDI 160 (401)
T ss_dssp EEECTTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred eeeCCCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC-CCCEEEEECCCCeEEE
Confidence 344456655544 45555 45688888999999999999988877765 788999999999 9999999999999999
Q ss_pred EecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEE
Q 019847 128 HDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207 (335)
Q Consensus 128 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 207 (335)
||+.+++. ...+..|...|.+++|+ +++|++++.||.|++||++.. ......+.+|...|.+++|+|++.. +++
T Consensus 161 wd~~~~~~-~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~-l~s 234 (401)
T 4aez_A 161 YDVESQTK-LRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIA--NHQIGTLQGHSSEVCGLAWRSDGLQ-LAS 234 (401)
T ss_dssp EETTTCCE-EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSE-EEE
T ss_pred EECcCCeE-EEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccC--cceeeEEcCCCCCeeEEEEcCCCCE-EEE
Confidence 99986654 56677999999999995 579999999999999998853 3456677889999999999998864 555
Q ss_pred ecCCCCCeEEEEECCCCceEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeE
Q 019847 208 GGGREDGCIKIWNVQKGTCIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILD 286 (335)
Q Consensus 208 ~~g~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 286 (335)
++ .|+.|++||+++++.+..+. +...+.+++|+|++..+++.. .++.|+.|++||+.+++.+..+. +...|.+
T Consensus 235 ~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~---~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~ 308 (401)
T 4aez_A 235 GG--NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATG---GGTMDKQIHFWNAATGARVNTVD-AGSQVTS 308 (401)
T ss_dssp EE--TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEE---CCTTTCEEEEEETTTCCEEEEEE-CSSCEEE
T ss_pred Ee--CCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEe---cCCCCCEEEEEECCCCCEEEEEe-CCCcEEE
Confidence 54 79999999999999888876 456899999999887665431 11379999999999999988886 5567999
Q ss_pred eEEcCCCCEEEEE--eCCCcEEEEecCCCCCCC--Cccccccccccceec
Q 019847 287 LSQSPDGLTVATA--GADETIRFWEAFGPSGDE--DSVSHLAGLVSLKTS 332 (335)
Q Consensus 287 ~~~~~~~~~l~~~--~~dg~v~iw~~~~~~~~~--~~~~~~~~i~~~~~~ 332 (335)
++|+|++++|+++ +.||.|++|++..++... ...+|...|.++.++
T Consensus 309 ~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s 358 (401)
T 4aez_A 309 LIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS 358 (401)
T ss_dssp EEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC
T ss_pred EEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC
Confidence 9999999999994 489999999998854333 245777778777664
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=248.83 Aligned_cols=271 Identities=12% Similarity=0.145 Sum_probs=221.2
Q ss_pred eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEE-EEEECCCcEEEEeCCCceeEeeecccccceeEee
Q 019847 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTL-AVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSS 107 (335)
Q Consensus 29 ~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 107 (335)
+++++.|+.|++||+++++....+. .| ..+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 5 ~vs~~~d~~v~v~d~~~~~~~~~~~--~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 5 YIANSESDNISVIDVTSNKVTATIP--VG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE--CS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEcCCCCEEEEEECCCCeEEEEee--cC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 4556689999999999998755443 44 458999999999987 566689999999999999988887554 899999
Q ss_pred ecCCCCCEE-EEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEE-EEEeCCCeEEEEEccCCCcccceeec
Q 019847 108 WNHWNGHIL-TSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL-ASGGDDNVVRIWERSKMSSSKSLHRF 185 (335)
Q Consensus 108 ~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~ 185 (335)
|+| +++.| ++++.++.|++||+.+++. ...+. +...+.+++|+|+++.+ ++++.|+.|++||+++. +.+..+
T Consensus 81 ~sp-dg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~ 154 (391)
T 1l0q_A 81 VSP-DGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK---AVINTV 154 (391)
T ss_dssp ECT-TSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEE
T ss_pred ECC-CCCEEEEEECCCCEEEEEECCCCeE-EEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEE
Confidence 999 77766 4555779999999986654 44444 45578999999999977 67788999999998764 334444
Q ss_pred cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEE
Q 019847 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265 (335)
Q Consensus 186 ~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 265 (335)
..+ ..+.+++|+|+++.++++++ .++.|++||+++++.+..+..+..+.+++|+|++++++++.. ...++.|++
T Consensus 155 ~~~-~~~~~~~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~~~v~~ 228 (391)
T 1l0q_A 155 SVG-RSPKGIAVTPDGTKVYVANF--DSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNV---DKYFNTVSM 228 (391)
T ss_dssp ECC-SSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEE---CSSCCEEEE
T ss_pred ecC-CCcceEEECCCCCEEEEEeC--CCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEec---CcCCCcEEE
Confidence 433 55799999999988877766 789999999999999998888889999999999999887631 015899999
Q ss_pred EECCCCceeecccCCCCceeEeEEcCCCCEE-EEEeCCCcEEEEecCCCCCC
Q 019847 266 WKYPNMTKVGELQSSNSRILDLSQSPDGLTV-ATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 266 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~ 316 (335)
||+.+++.+..+..|.. +.+++|+|++++| ++++.|+.|++||+..++..
T Consensus 229 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 229 IDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTIT 279 (391)
T ss_dssp EETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred EECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEE
Confidence 99999999888877654 7899999999877 67788999999999876543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=258.00 Aligned_cols=284 Identities=17% Similarity=0.205 Sum_probs=229.5
Q ss_pred cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC-CCCEEEEEECCCcEEEEeCCCceeEeeec-------------cc
Q 019847 34 LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDSKLQLWDAETSKLVRNLE-------------GH 99 (335)
Q Consensus 34 ~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------------~~ 99 (335)
.++.+++|+++.++... .+.+|...|++++|+| ++++|++|+.||.|++||+.+++....+. .|
T Consensus 21 ~~~~~~v~~~~~~~~~~--~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
T 4a11_B 21 AESTRRVLGLELNKDRD--VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH 98 (408)
T ss_dssp HHHHHHHHTEEECTTEE--ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred ccCcceeeccccCccee--eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccC
Confidence 45678889888777544 4457999999999999 99999999999999999999876655443 58
Q ss_pred ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec---CCCEEEEEeCCCeEEEEEccCC
Q 019847 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN---EGNLLASGGDDNVVRIWERSKM 176 (335)
Q Consensus 100 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~ 176 (335)
...|.+++|+|.++.+|++++.||.|++||+++... ...+ .+...+.++.++| ++.++++++.||.|++||++..
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 176 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-ADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG 176 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-EEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-ceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc
Confidence 899999999997788999999999999999986654 3333 3788899999998 4459999999999999998864
Q ss_pred CcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc-eEEEe----------------ecCCcEeEE
Q 019847 177 SSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT-CIHGI----------------DAKAQICGL 239 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~----------------~~~~~~~~~ 239 (335)
..+..+..|...|.+++|+|++++++++++ .||.|++||++++. .+..+ .+...+.++
T Consensus 177 ---~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 177 ---SCSHILQGHRQEILAVSWSPRYDYILATAS--ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp ---CCCEEECCCCSCEEEEEECSSCTTEEEEEE--TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred ---ceeeeecCCCCcEEEEEECCCCCcEEEEEc--CCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence 446677789999999999999988787776 89999999998765 33333 234679999
Q ss_pred EeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC-----CceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 240 EWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN-----SRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
+|+|++++++++ +.|+.|++||+.+++.......+. ..+........+..+++++.|+.|++||+..++
T Consensus 252 ~~~~~~~~l~~~------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 325 (408)
T 4a11_B 252 CFTSDGLHLLTV------GTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE 325 (408)
T ss_dssp EECTTSSEEEEE------ETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC
T ss_pred EEcCCCCEEEEe------cCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc
Confidence 999999999887 679999999999988765544321 122222223345567778889999999999988
Q ss_pred CCCCccccccccccceec
Q 019847 315 GDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 315 ~~~~~~~~~~~i~~~~~~ 332 (335)
......+|...|.++.++
T Consensus 326 ~~~~~~~~~~~v~~~~~s 343 (408)
T 4a11_B 326 QITMLKGHYKTVDCCVFQ 343 (408)
T ss_dssp EEEEECCCSSCEEEEEEE
T ss_pred ceeeeccCCCeEEEEEEc
Confidence 887778888888888775
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=252.35 Aligned_cols=284 Identities=11% Similarity=0.090 Sum_probs=233.0
Q ss_pred ceeeeecCC-ceEEEe-cCCeEEEEEecCCceeeEE---eecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeE
Q 019847 19 SKVIDWGRN-NVLAVA-LGPVLFLWKWENGKVKKLL---QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV 93 (335)
Q Consensus 19 ~~~~~~~~~-~~~~~~-~~~~i~vw~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 93 (335)
+.+++|+++ .+++++ .++.|++||+.+++..... .+.+|...|.+++|+|+++++++++.|+.|++||+++++.+
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~ 204 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK 204 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE
Confidence 457888874 444444 5678999999998876543 23478889999999999999999999999999999999999
Q ss_pred eeecccccceeEeeecCCCCCEE-EEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEe--------C
Q 019847 94 RNLEGHHRRVATSSWNHWNGHIL-TSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGG--------D 164 (335)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------~ 164 (335)
..+..|...+.+++|+| +++.+ ++++.++.|++||+++++. ...+. +...+.+++|+|+++++++++ .
T Consensus 205 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 281 (433)
T 3bws_A 205 ATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLE-IRKTD-KIGLPRGLLLSKDGKELYIAQFSASNQESG 281 (433)
T ss_dssp EEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEE-EEECC-CCSEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred EEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcE-EEEec-CCCCceEEEEcCCCCEEEEEECCCCccccC
Confidence 99988999999999999 77766 5555899999999986554 44343 345699999999999999988 5
Q ss_pred CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCC
Q 019847 165 DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRH 244 (335)
Q Consensus 165 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 244 (335)
||.|++||+++.. .+... .+...+.+++|+|+++.++++++ .|+.|++||+++++.+..+.....+.+++|+|+
T Consensus 282 dg~i~~~d~~~~~---~~~~~-~~~~~~~~~~~~~~g~~l~~~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~d 355 (433)
T 3bws_A 282 GGRLGIYSMDKEK---LIDTI-GPPGNKRHIVSGNTENKIYVSDM--CCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPD 355 (433)
T ss_dssp CEEEEEEETTTTE---EEEEE-EEEECEEEEEECSSTTEEEEEET--TTTEEEEEETTTTEEEEEEECSSSEEEEEECTT
T ss_pred CCeEEEEECCCCc---EEeec-cCCCCcceEEECCCCCEEEEEec--CCCEEEEEECCCCcEEEEecCCCCCCeEEEcCC
Confidence 8899999988643 23322 34567899999999988888876 899999999999999999988888999999999
Q ss_pred Cceeeeeee---------eeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeC-CCcEEEEecCC
Q 019847 245 HKEILSGHG---------FSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA-DETIRFWEAFG 312 (335)
Q Consensus 245 ~~~~~~~~~---------~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~v~iw~~~~ 312 (335)
++.++++.. +..++.||.|++||..+++.+..+..+ ..+.+++|+|++++|++++. |+.|++|+++.
T Consensus 356 g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 356 GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 998887632 122334689999999999998888764 46899999999999988875 99999999874
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=245.19 Aligned_cols=252 Identities=16% Similarity=0.270 Sum_probs=207.9
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCce--eeEEeecCCCCCceEEEEcC--CCCEEEEEECCCcEEEEeCC
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKV--KKLLQVPGEDDYPTSVSWSH--DAKTLAVGYMDSKLQLWDAE 88 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~ 88 (335)
+...+.+++|+++ .+++++.|+.|++||+.++.. .....+.+|...|.+++|+| ++++|++|+.||.|++||++
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~ 89 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED 89 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC
Confidence 5567899999884 477777899999999986542 34456678999999999999 69999999999999999998
Q ss_pred Cc---------eeEeeecccccceeEeeecCCC--CCEEEEeeCCCcEEEEecccCCeeeEE------------eecCCC
Q 019847 89 TS---------KLVRNLEGHHRRVATSSWNHWN--GHILTSGSKDKSIINHDVRVSNNVTSC------------IKAHSG 145 (335)
Q Consensus 89 ~~---------~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~------------~~~~~~ 145 (335)
++ +.+..+..|...|.+++|+| + +.+|++++.||.|++||+++....... ...|..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (351)
T 3f3f_A 90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQ 168 (351)
T ss_dssp TTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSC
T ss_pred CCcccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCccc
Confidence 87 56778889999999999999 7 999999999999999999876542211 125788
Q ss_pred CEEEEEeecC---CCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCC---cEEEEecCCCCCeEEEE
Q 019847 146 EVCGLKWSNE---GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQV---NVLATGGGREDGCIKIW 219 (335)
Q Consensus 146 ~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~g~~d~~i~i~ 219 (335)
.+.+++|+|+ +.++++++.|+.+.+|+.... ....+..+.+|...|.+++|+|++. .++++++ .||.|++|
T Consensus 169 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~--~dg~i~iw 245 (351)
T 3f3f_A 169 SDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG-KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC--KDGRIRIF 245 (351)
T ss_dssp CCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS-CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE--TTSCEEEE
T ss_pred ceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC-ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc--CCCeEEEE
Confidence 9999999997 999999999999977776543 3345677888999999999999983 4666766 89999999
Q ss_pred ECCCC----------------------------------------------ceEEEeec-CCcEeEEEeCCCCceeeeee
Q 019847 220 NVQKG----------------------------------------------TCIHGIDA-KAQICGLEWNRHHKEILSGH 252 (335)
Q Consensus 220 d~~~~----------------------------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 252 (335)
|++++ +.+..+.. ...+.+++|+|++++++++
T Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~- 324 (351)
T 3f3f_A 246 KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA- 324 (351)
T ss_dssp EEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE-
T ss_pred eCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe-
Confidence 99875 34444543 4689999999999999888
Q ss_pred eeeeecCCCeEEEEECCCCceeec
Q 019847 253 GFSASGDGNKLCLWKYPNMTKVGE 276 (335)
Q Consensus 253 ~~~~~~~~~~i~i~d~~~~~~~~~ 276 (335)
+.||.|++||+.+++....
T Consensus 325 -----~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 325 -----GDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp -----ETTSCEEEEEECTTSCEEE
T ss_pred -----cCCCcEEEEecCcCcchhh
Confidence 7899999999988765543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=257.50 Aligned_cols=259 Identities=10% Similarity=0.045 Sum_probs=204.1
Q ss_pred ccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEe
Q 019847 17 YYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR 94 (335)
Q Consensus 17 ~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 94 (335)
-.+.+++|+++ .+++++.|++|+ |...++. +.+|...|.+++|+|+| .++.+.+|+.+.. ...
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~-----l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~-~~~ 80 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD-----INCNSKNLFHVKEFPLE-------FENKLDFELAQQN-GLL 80 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EECCCSC-----CSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS-CSS
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--cccccce-----ecCCCccEEEEEECCCC-------CcceEEEEeCCCc-eEe
Confidence 56788999985 355566889999 7655542 36899999999999999 4555555554322 222
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCC-----CEEEEEeecCCCEEEEEeCCCeEE
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSG-----EVCGLKWSNEGNLLASGGDDNVVR 169 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~ 169 (335)
.+ .|...|.+++|+| ++..|++++.||.|++||... ....+. |.. .+.+++|||+|++||+|+.||+|+
T Consensus 81 ~~-~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 81 NS-QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp TT-SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred ec-CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 33 3578999999999 999999999999999999543 455455 655 599999999999999999999999
Q ss_pred EEEccCCCccc----ceeec----cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce---EEEee-c-CCcE
Q 019847 170 IWERSKMSSSK----SLHRF----TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC---IHGID-A-KAQI 236 (335)
Q Consensus 170 iwd~~~~~~~~----~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~-~-~~~~ 236 (335)
+||+....... .+..+ .+|...|.+++|+|++ +++++ .|+.+++||+..++. ..++. . ...|
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass---~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V 229 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL---SNNSVFSMTVSASSHQPVSRMIQNASRRKI 229 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE---TTCCEEEECCCSSSSCCCEEEEECCCSSCC
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe---CCCeEEEEECCCCccccceeeecccccCcE
Confidence 99988743211 24554 6688899999999998 55544 699999999988773 34553 3 4579
Q ss_pred eEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEE--cCCCCEEEEEeCCCcEEEEecC
Q 019847 237 CGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQ--SPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
.+++|+ +..++++ + ++.|++||+.+++......+|.+.|.+++| +|++..|+++++||+ ++|...
T Consensus 230 ~svaFs--g~~LASa------~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 230 TDLKIV--DYKVVLT------C-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCEEEE--TTEEEEE------C-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEEE--CCEEEEE------e-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 999999 5777765 3 699999999988874444479999999999 999999999999999 999975
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=249.00 Aligned_cols=268 Identities=13% Similarity=0.191 Sum_probs=214.0
Q ss_pred EEeecCCCCCceEEEEcCC---CCEEEEEECCCcEEEEeCCC-ceeE-eeecccccceeEeeecCCCCCEEEEeeCCCcE
Q 019847 51 LLQVPGEDDYPTSVSWSHD---AKTLAVGYMDSKLQLWDAET-SKLV-RNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 125 (335)
...+.+|...|++++|+|+ |++|++|+.||.|++||+++ ++.+ ..+..|...|.+++|+| ++++|++++.||.|
T Consensus 32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v 110 (368)
T 3mmy_A 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTA 110 (368)
T ss_dssp EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEEEEcCCCcE
Confidence 4456789999999999999 69999999999999999997 5544 77888999999999999 99999999999999
Q ss_pred EEEecccCCeeeEEeecCCCCEEEEEe--ecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCc
Q 019847 126 INHDVRVSNNVTSCIKAHSGEVCGLKW--SNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203 (335)
Q Consensus 126 ~~~d~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 203 (335)
++||+++... .. ...|...|.+++| +|++++|++++.||.|++||++... .+..+..+ ..+.++.+.++ .
T Consensus 111 ~iwd~~~~~~-~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~-~~~~~~~~~~~--~ 182 (368)
T 3mmy_A 111 KMWDLSSNQA-IQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN---PMMVLQLP-ERCYCADVIYP--M 182 (368)
T ss_dssp EEEETTTTEE-EE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS---CSEEEECS-SCEEEEEEETT--E
T ss_pred EEEEcCCCCc-ee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc---EEEEEecC-CCceEEEecCC--e
Confidence 9999986653 33 5679999999999 8899999999999999999988754 34444444 45667777654 4
Q ss_pred EEEEecCCCCCeEEEEECCCCceEEEee---cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC---ceeecc
Q 019847 204 VLATGGGREDGCIKIWNVQKGTCIHGID---AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM---TKVGEL 277 (335)
Q Consensus 204 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~---~~~~~~ 277 (335)
+++.+ .++.+++|+++......... ......++.+.++...-..+ +++++.|+.|++||++.. ..+..+
T Consensus 183 ~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~dg~i~i~~~~~~~~~~~~~~~ 257 (368)
T 3mmy_A 183 AVVAT---AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTG--FALGSIEGRVAIHYINPPNPAKDNFTF 257 (368)
T ss_dssp EEEEE---GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEE--EEEEETTSEEEEEESSCSCHHHHSEEE
T ss_pred eEEEe---CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCe--EEEecCCCcEEEEecCCCCccccceee
Confidence 55544 69999999998765443332 23455666666555441111 233478999999999987 556667
Q ss_pred cCCCC------------ceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 278 QSSNS------------RILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 278 ~~~~~------------~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
..|.. .|++++|+|++++|++++.||.|++||+..++.......|...|.++.++
T Consensus 258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 324 (368)
T 3mmy_A 258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFN 324 (368)
T ss_dssp ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEEC
T ss_pred eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEEC
Confidence 77765 69999999999999999999999999999887777777888888888775
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-36 Score=271.79 Aligned_cols=248 Identities=20% Similarity=0.330 Sum_probs=209.4
Q ss_pred cccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCC--CCEEEEEECCCcEEEEeCCC
Q 019847 14 MEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHD--AKTLAVGYMDSKLQLWDAET 89 (335)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~~ 89 (335)
.+...+++++|+++ .+++++.||.|++||+.++.......+.+|...|++++|+|+ +++|++|+.||.|++||+.+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence 35567899999874 577778999999999997766667778899999999999988 99999999999999999998
Q ss_pred ce--eEeeecccccceeEeeecCCC--CCEEEEeeCCCcEEEEecccCCe-eeEEeecCCCCEEEEEeec----------
Q 019847 90 SK--LVRNLEGHHRRVATSSWNHWN--GHILTSGSKDKSIINHDVRVSNN-VTSCIKAHSGEVCGLKWSN---------- 154 (335)
Q Consensus 90 ~~--~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~---------- 154 (335)
++ .+..+..|...|.+++|+| + ++.+++|+.||.|++||++.... ....+..|...|.+++|+|
T Consensus 87 ~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~ 165 (753)
T 3jro_A 87 GRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 165 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--------
T ss_pred CcccccccccCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccc
Confidence 87 6777888999999999999 6 89999999999999999987632 3455678999999999999
Q ss_pred ---CCCEEEEEeCCCeEEEEEccCCCcc-cceeeccCCCCCeeEEEecCCC--CcEEEEecCCCCCeEEEEECCCCceE-
Q 019847 155 ---EGNLLASGGDDNVVRIWERSKMSSS-KSLHRFTDHCGGVKALAWSPHQ--VNVLATGGGREDGCIKIWNVQKGTCI- 227 (335)
Q Consensus 155 ---~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~g~~d~~i~i~d~~~~~~~- 227 (335)
+++++++|+.||.|++||++..... .....+.+|..+|.+++|+|++ ..++++++ .||.|++||+++++..
T Consensus 166 ~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s--~Dg~I~iwd~~~~~~~~ 243 (753)
T 3jro_A 166 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDNEQGPW 243 (753)
T ss_dssp -CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--SSSCEEEEEESSSSSCC
T ss_pred cCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe--cCCEEEEecCCCCCCcc
Confidence 5899999999999999999875332 4556778899999999999993 35666665 8999999999886421
Q ss_pred -----EEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC
Q 019847 228 -----HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 228 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
....+...+.+++|+|++.+++++ +.||.|++|++..
T Consensus 244 ~~~~~~~~~~~~~v~~l~~spdg~~l~s~------s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 244 KKTLLKEEKFPDVLWRASWSLSGNVLALS------GGDNKVTLWKENL 285 (753)
T ss_dssp BCCBSSSSCCSSCCCCEEECTTTCCEEEE------CSSSCEECCBCCS
T ss_pred eeEEeccCCCCCceEEEEEcCCCCEEEEE------cCCCEEEEEecCC
Confidence 111245679999999999999887 7799999999874
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=250.35 Aligned_cols=266 Identities=12% Similarity=0.081 Sum_probs=204.6
Q ss_pred cCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC---------CceeEee
Q 019847 25 GRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE---------TSKLVRN 95 (335)
Q Consensus 25 ~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~---------~~~~~~~ 95 (335)
.+..+++++.|+.|++||+++++....+. ...|.++.|+|+ +++++.|+.|++|+.. +++.+..
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~ 119 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLRE 119 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEE
Confidence 34568888899999999999998766554 356788889888 9999999999999765 4444444
Q ss_pred ec-ccccceeEeeecCC-CCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 96 LE-GHHRRVATSSWNHW-NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 96 ~~-~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
+. .|...|.+++|+|. +++++++++.||.|++||++++.........+...+.+++|+|++++|++|+.||.|++||+
T Consensus 120 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~ 199 (343)
T 3lrv_A 120 IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNL 199 (343)
T ss_dssp EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEES
T ss_pred eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 43 56688999999983 57899999999999999999777633333456668999999999999999999999999999
Q ss_pred cCCCcccceeeccC-CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec----CCcE--eEEEeCCCCc
Q 019847 174 SKMSSSKSLHRFTD-HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA----KAQI--CGLEWNRHHK 246 (335)
Q Consensus 174 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~----~~~~--~~~~~~~~~~ 246 (335)
++.... ...+.. |.++|.+++|+|++..+ ++++ |+.|++||+++++.+..+.. ..++ .+++|+|+++
T Consensus 200 ~~~~~~--~~~~~~~h~~~v~~l~fs~~g~~l-~s~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 273 (343)
T 3lrv_A 200 SSPDQA--SSRFPVDEEAKIKEVKFADNGYWM-VVEC---DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK 273 (343)
T ss_dssp SCTTSC--CEECCCCTTSCEEEEEECTTSSEE-EEEE---SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS
T ss_pred CCCCCC--ccEEeccCCCCEEEEEEeCCCCEE-EEEe---CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCC
Confidence 875431 145566 99999999999999654 4443 44999999999877655442 1223 3699999999
Q ss_pred eeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcC---CCCEEEEEeCCCcEEEEecCC
Q 019847 247 EILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSP---DGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~v~iw~~~~ 312 (335)
+++++. +.++.+++|++.+....... .++..++|.+ +.+.+++++.||.+.++-...
T Consensus 274 ~l~~~s-----~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 274 NMIAYS-----NESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEEEEE-----TTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EEEEec-----CCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 999862 33899999999766543332 5678889998 888999999999999885443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=246.72 Aligned_cols=244 Identities=12% Similarity=0.125 Sum_probs=193.7
Q ss_pred ccccceeeeecCCceEEEe-----------cCCeEEEEEecCCcee--eEEe-----ecCCCCCceEEEEcCCCCEEEEE
Q 019847 15 EDYYSKVIDWGRNNVLAVA-----------LGPVLFLWKWENGKVK--KLLQ-----VPGEDDYPTSVSWSHDAKTLAVG 76 (335)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~-----------~~~~i~vw~~~~~~~~--~~~~-----~~~~~~~v~~~~~~~~~~~l~~~ 76 (335)
++..+.+++++++.+++++ .|+.+++|++.+.+.. .... ...+...+.+++|+|||++++++
T Consensus 72 ~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~a 151 (365)
T 4h5i_A 72 NDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIA 151 (365)
T ss_dssp TSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEE
T ss_pred CCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEE
Confidence 3445678888888777664 3668999998765421 1111 12345668999999999998765
Q ss_pred E--CCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee-EEeecCCCCEEEEEee
Q 019847 77 Y--MDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT-SCIKAHSGEVCGLKWS 153 (335)
Q Consensus 77 ~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~i~~~~~~ 153 (335)
+ .|++|+|||+++++.+..+. |...|.+++|+| +++++++++.+ .+.+|+..++.... .....|...|.+++|+
T Consensus 152 s~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs 228 (365)
T 4h5i_A 152 SSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFI 228 (365)
T ss_dssp ESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEE
T ss_pred ECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEc
Confidence 5 68999999999999998886 778899999999 99999999855 56666666565543 3455688899999999
Q ss_pred cCCCEEEEEeCCC----eEEEEEccCCCcc-cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEE
Q 019847 154 NEGNLLASGGDDN----VVRIWERSKMSSS-KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIH 228 (335)
Q Consensus 154 ~~~~~l~~~~~dg----~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~ 228 (335)
|+++++++++.|+ .+++|++...... .....+.+|..+|++++|+|+++ ++++++ .|+.|++||+++++++.
T Consensus 229 pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs--~D~~V~iwd~~~~~~~~ 305 (365)
T 4h5i_A 229 ADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE-LAVLAS--NDNSIALVKLKDLSMSK 305 (365)
T ss_dssp ETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC-EEEEEE--TTSCEEEEETTTTEEEE
T ss_pred CCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC-ceEEEc--CCCEEEEEECCCCcEEE
Confidence 9999999999887 6888998754321 22456678999999999999996 566665 89999999999999998
Q ss_pred Ee-e-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC
Q 019847 229 GI-D-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 229 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
.+ + +...|++++|+|+|++|+++ +.|++|+|||++.
T Consensus 306 ~~~~gH~~~V~~v~fSpdg~~laS~------S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 306 IFKQAHSFAITEVTISPDSTYVASV------SAANTIHIIKLPL 343 (365)
T ss_dssp EETTSSSSCEEEEEECTTSCEEEEE------ETTSEEEEEECCT
T ss_pred EecCcccCCEEEEEECCCCCEEEEE------eCCCeEEEEEcCC
Confidence 86 3 45689999999999999988 7899999999964
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=248.16 Aligned_cols=276 Identities=13% Similarity=0.116 Sum_probs=191.3
Q ss_pred CceEEEecCCeEEEEEecCCce-------eeEEeecCCCCCceEEEE--------------------cCCCCEEEEEECC
Q 019847 27 NNVLAVALGPVLFLWKWENGKV-------KKLLQVPGEDDYPTSVSW--------------------SHDAKTLAVGYMD 79 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~~~-------~~~~~~~~~~~~v~~~~~--------------------~~~~~~l~~~~~d 79 (335)
..+++++.++.|.+|+...... ........+...+..+.| .+++.+|++++.|
T Consensus 31 ~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~~~d 110 (393)
T 4gq1_A 31 SNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLACVCQD 110 (393)
T ss_dssp TTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEEEEETT
T ss_pred CCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEEEeCC
Confidence 3688889999999998643210 111111123334444444 3456689999999
Q ss_pred CcEEEEeCCCceeE-----eeecccccceeEeeecC-------CCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCE
Q 019847 80 SKLQLWDAETSKLV-----RNLEGHHRRVATSSWNH-------WNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEV 147 (335)
Q Consensus 80 g~i~iw~~~~~~~~-----~~~~~~~~~v~~~~~~~-------~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i 147 (335)
++|++||+++++.. ..+.+|.+.|.+++|+| .++++|++|+.|++|++||+++..+ ...+..|...+
T Consensus 111 ~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~-~~~~~~~~~~v 189 (393)
T 4gq1_A 111 NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP-ILAGYPLSSPG 189 (393)
T ss_dssp SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE-EEEEEECSSCE
T ss_pred CcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce-eeeecCCCCCc
Confidence 99999999887643 34678999999999986 3678999999999999999986665 44456788999
Q ss_pred EEEEeecCC-CEEEEEeCCCeEEEEEccCCCcccce----------------------eeccCCCCCeeEEEec-CCCCc
Q 019847 148 CGLKWSNEG-NLLASGGDDNVVRIWERSKMSSSKSL----------------------HRFTDHCGGVKALAWS-PHQVN 203 (335)
Q Consensus 148 ~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~----------------------~~~~~~~~~v~~~~~~-~~~~~ 203 (335)
.+++|+|++ ++|++++.||.|++||++........ ....+|...+.++.|+ |++..
T Consensus 190 ~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~ 269 (393)
T 4gq1_A 190 ISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSG 269 (393)
T ss_dssp EEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCE
T ss_pred EEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCE
Confidence 999999976 58999999999999998865322111 1124577889999987 67754
Q ss_pred EEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEE------------------eCC-CCceeeeeeeeeeecCCCeE
Q 019847 204 VLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLE------------------WNR-HHKEILSGHGFSASGDGNKL 263 (335)
Q Consensus 204 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~------------------~~~-~~~~~~~~~~~~~~~~~~~i 263 (335)
+++++ .|+.+++||+..++....+..+ ..+..+. ++| .+..++ ++++.|+.|
T Consensus 270 -l~s~s--~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~sgs~Dg~V 341 (393)
T 4gq1_A 270 -ILAMC--KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFA-----TAHSQHGLI 341 (393)
T ss_dssp -EEEEC--TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEE-----EEETTTTEE
T ss_pred -EEEEe--CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEE-----EEECCCCEE
Confidence 45554 8999999999887665544321 1222222 222 222222 234789999
Q ss_pred EEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 264 CLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 264 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
++||+.+++.......|..+|++++|+|||++||+++.|| +.+|++..
T Consensus 342 ~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 342 QLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp EEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred EEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence 9999999999888888999999999999999999998765 66776654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=240.01 Aligned_cols=282 Identities=12% Similarity=0.086 Sum_probs=214.0
Q ss_pred CcccccceeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEE-EEEECCCcEEEEeCCCc
Q 019847 13 LMEDYYSKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTL-AVGYMDSKLQLWDAETS 90 (335)
Q Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~ 90 (335)
..+...+.+++|+++ .+++++.+..+++|+.++++....... ..+..+++.++++.+ ++++.|+.|++||+.++
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~ 91 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM----RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK 91 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC----SCCCEEEECTTSSEEEEECSSTTEEEEEETTTT
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec----CCeEEEEEcCCCCEEEEEECCccEEEEEECCCC
Confidence 345677899999984 677777777899999987765433322 247889999988887 45677899999999999
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEE--EeCCCeE
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLAS--GGDDNVV 168 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i 168 (335)
+.+..+. +...|.++.+++ + .++++ .++.|++||+.+.......+.. +...+++++ .++++ |+.||.|
T Consensus 92 ~~~~~~~-~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v 161 (355)
T 3vu4_A 92 QDVSRIK-VDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQI 161 (355)
T ss_dssp EEEEEEE-CSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCE
T ss_pred cEEEEEE-CCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEE
Confidence 9998887 677999999976 3 34444 4789999999876233333333 444566677 56766 5789999
Q ss_pred EEEEccCCCc------------ccc-eeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe-EEEEECCCCceEEEee---
Q 019847 169 RIWERSKMSS------------SKS-LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC-IKIWNVQKGTCIHGID--- 231 (335)
Q Consensus 169 ~iwd~~~~~~------------~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~-i~i~d~~~~~~~~~~~--- 231 (335)
++||++.... ..+ +..+.+|.++|.+++|+|++. ++++++ .|++ |++||+++++++..+.
T Consensus 162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s--~d~~~v~iwd~~~~~~~~~~~~g~ 238 (355)
T 3vu4_A 162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCS--QDGTIIRVFKTEDGVLVREFRRGL 238 (355)
T ss_dssp EEEECCC------------------CCEEECCCSSCEEEEEECTTSS-EEEEEE--TTCSEEEEEETTTCCEEEEEECTT
T ss_pred EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEe--CCCCEEEEEECCCCcEEEEEEcCC
Confidence 9999886431 012 667889999999999999986 555555 8998 9999999999999998
Q ss_pred cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee--eccc---------------------CCCCceeEeE
Q 019847 232 AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV--GELQ---------------------SSNSRILDLS 288 (335)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~~---------------------~~~~~i~~~~ 288 (335)
+...+.+++|+|++++++++ +.|+.|++||+...... ..+. .+......++
T Consensus 239 h~~~v~~~~~s~~~~~l~s~------s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 312 (355)
T 3vu4_A 239 DRADVVDMKWSTDGSKLAVV------SDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIA 312 (355)
T ss_dssp CCSCEEEEEECTTSCEEEEE------ETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEE
T ss_pred CCCcEEEEEECCCCCEEEEE------ECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEE
Confidence 56789999999999999988 77999999999765321 1111 1122346789
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 289 QSPDGLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 289 ~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
|++++++|++++.||.+++|++.......
T Consensus 313 ~~~d~~~l~~~~~dg~~~~~~~~~~~~~~ 341 (355)
T 3vu4_A 313 WISESSLVVVWPHTRMIETFKVVFDDEME 341 (355)
T ss_dssp ESSSSEEEEEETTTTEEEEEEEEEETTTT
T ss_pred EeCCCCEEEEEeCCCeEEEEEEEcCCCCc
Confidence 99999999999999999999998765443
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=251.10 Aligned_cols=248 Identities=21% Similarity=0.428 Sum_probs=206.2
Q ss_pred CcccccceeeeecCC---ceEEEecCCeEEEEEecC--------CceeeEEeecCCCCCceEEEEcCCCC-EEEEEECCC
Q 019847 13 LMEDYYSKVIDWGRN---NVLAVALGPVLFLWKWEN--------GKVKKLLQVPGEDDYPTSVSWSHDAK-TLAVGYMDS 80 (335)
Q Consensus 13 ~~~~~~~~~~~~~~~---~~~~~~~~~~i~vw~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg 80 (335)
..+...+++++|+++ .+++++.+|.|++|++.+ ++......+.+|...|++++|+|+++ +|++|+.||
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 204 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH 204 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence 345667899999984 355556799999999986 23445566779999999999999988 999999999
Q ss_pred cEEEEeCCCcee-------EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC--eeeEEeecCCCCEEEEE
Q 019847 81 KLQLWDAETSKL-------VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN--NVTSCIKAHSGEVCGLK 151 (335)
Q Consensus 81 ~i~iw~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~~~ 151 (335)
.|++|++.++.. ...+..|...|.+++|+|.++.+|++++.||.|++||+++.. .....+..|...|++++
T Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 284 (430)
T 2xyi_A 205 TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS 284 (430)
T ss_dssp CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEE
T ss_pred eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEE
Confidence 999999987322 455678999999999999778999999999999999999763 44556778999999999
Q ss_pred eecCCC-EEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC-------
Q 019847 152 WSNEGN-LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK------- 223 (335)
Q Consensus 152 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~------- 223 (335)
|+|++. +|++|+.||.|++||++... ..+..+..|...|.+++|+|+++.++++++ .|+.|++||+..
T Consensus 285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~ 360 (430)
T 2xyi_A 285 FNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSKIGEEQST 360 (430)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEE--TTSCCEEEEGGGTTCCCCH
T ss_pred eCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEe--CCCcEEEEeCCCCccccCc
Confidence 999887 78999999999999998642 356777789999999999999988888877 899999999987
Q ss_pred -------CceEEEeec-CCcEeEEEeCCCCc-eeeeeeeeeeecCCCeEEEEECCC
Q 019847 224 -------GTCIHGIDA-KAQICGLEWNRHHK-EILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 224 -------~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
.+.+..+.. ...+.+++|+|+++ .++++ +.|+.|++|++..
T Consensus 361 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~------s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 361 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV------SEDNIMQVWQMAE 410 (430)
T ss_dssp HHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEE------ETTSEEEEEEECH
T ss_pred cccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEE------ECCCCEEEeEccc
Confidence 245555544 45799999999999 56655 7799999999864
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=251.26 Aligned_cols=248 Identities=18% Similarity=0.319 Sum_probs=206.4
Q ss_pred cccccceeeeecC-C--ceEEEecCCeEEEEEecCCce-----eeEEeecCCCCCceEEEEcCCC-CEEEEEECCCcEEE
Q 019847 14 MEDYYSKVIDWGR-N--NVLAVALGPVLFLWKWENGKV-----KKLLQVPGEDDYPTSVSWSHDA-KTLAVGYMDSKLQL 84 (335)
Q Consensus 14 ~~~~~~~~~~~~~-~--~~~~~~~~~~i~vw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i 84 (335)
.+...+.+++|++ + .+++++.|+.|++||+.++.. .....+.+|...|.+++|+|++ ++|++++.||.|++
T Consensus 79 ~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~i 158 (402)
T 2aq5_A 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILV 158 (402)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEE
T ss_pred cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEE
Confidence 3567789999987 3 566777899999999998743 2345667899999999999998 69999999999999
Q ss_pred EeCCCceeEeee--cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCC-EEEEEeecCCCEEEE
Q 019847 85 WDAETSKLVRNL--EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGE-VCGLKWSNEGNLLAS 161 (335)
Q Consensus 85 w~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~ 161 (335)
||+++++.+..+ ..|...|.+++|+| ++++|++++.||.|++||++++.........|.+. +.++.|+|++++|++
T Consensus 159 wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (402)
T 2aq5_A 159 WDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTT 237 (402)
T ss_dssp EETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEE
T ss_pred EECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEE
Confidence 999999999999 78999999999999 99999999999999999999766544432678776 899999999999999
Q ss_pred E---eCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce----EEEeecCC
Q 019847 162 G---GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC----IHGIDAKA 234 (335)
Q Consensus 162 ~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~----~~~~~~~~ 234 (335)
| +.|+.|++||++.......... ..+...+.+++|+|++..++++++ .|+.|++||+.+++. +..+.+..
T Consensus 238 g~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~g~--~dg~i~i~d~~~~~~~~~~l~~~~~~~ 314 (402)
T 2aq5_A 238 GFSRMSERQVALWDTKHLEEPLSLQE-LDTSSGVLLPFFDPDTNIVYLCGK--GDSSIRYFEITSEAPFLHYLSMFSSKE 314 (402)
T ss_dssp EECTTCCEEEEEEETTBCSSCSEEEE-CCCCSSCEEEEEETTTTEEEEEET--TCSCEEEEEECSSTTCEEEEEEECCSS
T ss_pred eccCCCCceEEEEcCccccCCceEEe-ccCCCceeEEEEcCCCCEEEEEEc--CCCeEEEEEecCCCcceEeecccccCC
Confidence 9 7899999999987543222222 246778999999999988877775 799999999998873 33344568
Q ss_pred cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 235 QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
++.+++|+|++.+++++ ++.+++|++.+++.
T Consensus 315 ~v~~~~~sp~~~~~~s~--------~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 315 SQRGMGYMPKRGLEVNK--------CEIARFYKLHERKC 345 (402)
T ss_dssp CCSEEEECCGGGSCGGG--------TEEEEEEEEETTEE
T ss_pred cccceEEecccccceec--------ceeEEEEEcCCCcE
Confidence 89999999999988755 77999999987543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=252.16 Aligned_cols=239 Identities=13% Similarity=0.105 Sum_probs=198.9
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCce---eEeeecc-------------------------------------
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK---LVRNLEG------------------------------------- 98 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~------------------------------------- 98 (335)
.++.+++|+|+|++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468999999999966666 57899999999988 5555442
Q ss_pred -----------------cccceeEeeecCCCCCEE-EEeeCCCcEEEEecc--cCCeeeEEee--cCCCCEEEEEeecCC
Q 019847 99 -----------------HHRRVATSSWNHWNGHIL-TSGSKDKSIINHDVR--VSNNVTSCIK--AHSGEVCGLKWSNEG 156 (335)
Q Consensus 99 -----------------~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~~d~~--~~~~~~~~~~--~~~~~i~~~~~~~~~ 156 (335)
|...|.+++|+| ++++| ++++.||.|++||+. ++.. ...+. .|...|.+++|+|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNV-LKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp ----------------CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSC-EEEEEEEECSSCEEEEEECTTS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCce-eeeeecccCCCCceEEEEcCCC
Confidence 223699999999 88885 899999999999998 5554 34343 678899999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCCccc-ceeeccCCCCCeeEEEecCC---CCcEEEEecCCCCCeEEEEECCCCceEEEee-
Q 019847 157 NLLASGGDDNVVRIWERSKMSSSK-SLHRFTDHCGGVKALAWSPH---QVNVLATGGGREDGCIKIWNVQKGTCIHGID- 231 (335)
Q Consensus 157 ~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~- 231 (335)
++|++++.||.+++|++....... ....+.+|...|.+++|+|+ +. ++++++ .|+.|++||+++++.+..+.
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~--~d~~i~vwd~~~~~~~~~~~~ 238 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSD--RDEHIKISHYPQCFIVDKWLF 238 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEE--TTSCEEEEEESCTTCEEEECC
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEc--CCCcEEEEECCCCceeeeeec
Confidence 999999999999999988765443 44467789999999999999 64 555555 89999999999998887743
Q ss_pred -cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccC-------------------------CCCcee
Q 019847 232 -AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS-------------------------SNSRIL 285 (335)
Q Consensus 232 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-------------------------~~~~i~ 285 (335)
+...+.+++|+ ++.+++++ +.|+.|++||+.+++.+..+.. ....|.
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s~------~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLSA------GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEEE------ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred CCCCceEEEEEC-CCCEEEEE------eCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 45789999999 99999987 6799999999999998777652 234689
Q ss_pred EeEEcCCCCEEEEEe-CCCcEEEEec
Q 019847 286 DLSQSPDGLTVATAG-ADETIRFWEA 310 (335)
Q Consensus 286 ~~~~~~~~~~l~~~~-~dg~v~iw~~ 310 (335)
+++|+|++++|++++ .|+.|++|++
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 999999999999998 8999999999
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-34 Score=228.15 Aligned_cols=291 Identities=12% Similarity=0.042 Sum_probs=200.1
Q ss_pred cccccccCCCCcccccceeeeecC----CceEEEecCCeEEEEEecCC-ceeeEEeecCCCCCceEEEEcCCCCEEEE-E
Q 019847 3 REARILDAPYLMEDYYSKVIDWGR----NNVLAVALGPVLFLWKWENG-KVKKLLQVPGEDDYPTSVSWSHDAKTLAV-G 76 (335)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~vw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~ 76 (335)
+....+..|.-.-...+.++-|.. +..+.++....|++|+..++ +.....+...|+.+|..+.+.||..-|++ +
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 105 (356)
T 2w18_A 26 QLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVA 105 (356)
T ss_dssp EEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEE
T ss_pred eeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeee
Confidence 334455566555566677777765 23666778899999999887 23456777789999999999996543333 2
Q ss_pred ECCC---cEEEEeCCCc----eeEeeecccccceeEeeecCCCCCEEEEee--CCCcEEEEecccCCeeeEEeecCCCCE
Q 019847 77 YMDS---KLQLWDAETS----KLVRNLEGHHRRVATSSWNHWNGHILTSGS--KDKSIINHDVRVSNNVTSCIKAHSGEV 147 (335)
Q Consensus 77 ~~dg---~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~i 147 (335)
-.+= .|+..-+... .....-.+|...+..+ + +++++.+++ .|+.|++|++....+....+..|...+
T Consensus 106 ~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~-~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v 181 (356)
T 2w18_A 106 LGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---T-KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEE 181 (356)
T ss_dssp ECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---T-TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSS
T ss_pred eccccccceEEEEECCCccccccEEEeCCCeEEEEec---C-CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCce
Confidence 2111 1111111111 1111112344444443 3 666666644 699999999966566677778899999
Q ss_pred EEEEeec---CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCC---CCeeEEEecCCCCcEE-----------EEecC
Q 019847 148 CGLKWSN---EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHC---GGVKALAWSPHQVNVL-----------ATGGG 210 (335)
Q Consensus 148 ~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~-----------~~~~g 210 (335)
+.++|+| ++.+|++++.|++|++||++++ +.++++.+|. ..+.+++|+|++..++ +++
T Consensus 182 ~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG---k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSG-- 256 (356)
T 2w18_A 182 TILTFAEVQGMQEALLGTTIMNNIVIWNLKTG---QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLR-- 256 (356)
T ss_dssp CEEEEEEEETSTTEEEEEETTSEEEEEETTTC---CEEEEEECCC---CCCEEEEEEETTEEEEEEC-------------
T ss_pred eeEEeeccCCCCceEEEecCCCcEEEEECCCC---cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeecc--
Confidence 9999999 7799999999999999998875 4466665543 3577889999997553 344
Q ss_pred CCCCeEEEEECCCCceEEEee-----cC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCce
Q 019847 211 REDGCIKIWNVQKGTCIHGID-----AK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRI 284 (335)
Q Consensus 211 ~~d~~i~i~d~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i 284 (335)
+.|++|++||..+++.+..+. .+ ....+.. ..+..++++ +.|++|+|||+.+++.+.++.+|...+
T Consensus 257 s~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~--~sg~~lASg------S~DgTIkIWDl~tGk~l~tL~gH~~~v 328 (356)
T 2w18_A 257 SPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGD--VKDHCAAAI------LTSGTIAIWDLLLGQCTALLPPVSDQH 328 (356)
T ss_dssp -CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEE--EETTEEEEE------ETTSCEEEEETTTCSEEEEECCC--CC
T ss_pred CCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccc--cCCCEEEEE------cCCCcEEEEECCCCcEEEEecCCCCCe
Confidence 489999999999998876542 11 1122222 224444544 789999999999999999999998765
Q ss_pred e-EeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 285 L-DLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 285 ~-~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
. .++|+|||++|++|+.|++|+|||+
T Consensus 329 vs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 329 WSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCcEEEecC
Confidence 5 5899999999999999999999996
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=239.98 Aligned_cols=258 Identities=18% Similarity=0.404 Sum_probs=215.4
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec--ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee
Q 019847 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE--GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT 137 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 137 (335)
.++.++|+++ +.||+|. |++|+|||..+++....+. .|...|++++|+| ++++|++|+.||.|++||+++++. .
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~-~ 182 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKR-L 182 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE-E
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCCCcE-E
Confidence 4678999975 4777775 9999999999998877654 5778899999999 999999999999999999986654 6
Q ss_pred EEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEE
Q 019847 138 SCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIK 217 (335)
Q Consensus 138 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (335)
..+.+|...+.+++++ +.+|++|+.|+.+++||.+.. ...+..+.+|...+..+.|+|++..+++ ++ .|+.++
T Consensus 183 ~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~--~~~~~~~~~h~~~~~~~~~~~~g~~l~s-~~--~D~~v~ 255 (420)
T 4gga_A 183 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA--EHHVATLSGHSQEVCGLRWAPDGRHLAS-GG--NDNLVN 255 (420)
T ss_dssp EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSEEEE-EE--TTSCEE
T ss_pred EEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc--ceeeEEecccccceeeeeecCCCCeeee-ee--ccccce
Confidence 6688999999988875 579999999999999998764 3456677889999999999999975554 44 799999
Q ss_pred EEECCCCce----EEE-eecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCC
Q 019847 218 IWNVQKGTC----IHG-IDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 218 i~d~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
+||..+++. +.. ..+...+.+++|+|.+..+++. ..++.|+.|++||+.+++....+..|. .+.++.|+|+
T Consensus 256 i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~---~~gs~D~~I~iwd~~t~~~~~~~~~~~-~v~~~~~~~~ 331 (420)
T 4gga_A 256 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT---GGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPH 331 (420)
T ss_dssp EEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEE---EECTTTCEEEEEETTTTEEEEEEECSS-CEEEEEEETT
T ss_pred EEeeccccccceeeeeecccCCceeeeeeCCCcccEEEE---EeecCCCEEEEEeCCccccceeecccc-ceeeeeecCC
Confidence 999987753 222 3346689999999988766532 234789999999999999998887664 5889999999
Q ss_pred CCEEEEEe--CCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 293 GLTVATAG--ADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 293 ~~~l~~~~--~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
++.+++++ .||.|++||+.+.+....+.+|.+.|.++.++
T Consensus 332 ~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s 373 (420)
T 4gga_A 332 YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS 373 (420)
T ss_dssp TTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred CCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 99988765 79999999999998888888999999998875
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=246.22 Aligned_cols=258 Identities=13% Similarity=0.102 Sum_probs=197.0
Q ss_pred ccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEe
Q 019847 15 EDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR 94 (335)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 94 (335)
+...+.+++|+|+. .++.|++.+++....+.+ .|...|.+++|+|+|++||+++.||.|++||.++ ++.
T Consensus 51 h~~~v~~V~FsPdg--------~~~~~~~~~~~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~ 119 (588)
T 2j04_A 51 NSKNLFHVKEFPLE--------FENKLDFELAQQNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLT 119 (588)
T ss_dssp BGGGTEEEEEECCC--------CCCTTTTSCCCSSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEE
T ss_pred CCccEEEEEECCCC--------CcceEEEEeCCCceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eee
Confidence 44556666666654 455555555543333433 4588999999999999999999999999999654 666
Q ss_pred eeccccc-----ceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe------eeEEe----ecCCCCEEEEEeecCCCEE
Q 019847 95 NLEGHHR-----RVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN------VTSCI----KAHSGEVCGLKWSNEGNLL 159 (335)
Q Consensus 95 ~~~~~~~-----~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~------~~~~~----~~~~~~i~~~~~~~~~~~l 159 (335)
.+. |.. .+.+++|+| ++++|++|+.||+|++||+..+.. ....+ .+|...|.+++|+|++ +
T Consensus 120 ~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--L 195 (588)
T 2j04_A 120 NLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--L 195 (588)
T ss_dssp ECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--E
T ss_pred ecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--E
Confidence 666 665 599999999 999999999999999999987642 24444 6678899999999998 8
Q ss_pred EEEeCCCeEEEEEccCCCcccceeec-cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce-EEEeecCCcEe
Q 019847 160 ASGGDDNVVRIWERSKMSSSKSLHRF-TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC-IHGIDAKAQIC 237 (335)
Q Consensus 160 ~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~~~~~~ 237 (335)
++++.|+.|++||+.........+.+ .+|...|.+++|+ + ..+++++ ++.|++||+.+++. ...+.+...+.
T Consensus 196 aass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g-~~LASa~---~~tIkLWd~~~~~~~~~~~gh~~~V~ 269 (588)
T 2j04_A 196 VAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D-YKVVLTC---PGYVHKIDLKNYSISSLKTGSLENFH 269 (588)
T ss_dssp EEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T-TEEEEEC---SSEEEEEETTTTEEEEEECSCCSCCC
T ss_pred EEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C-CEEEEEe---CCeEEEEECCCCeEEEEEcCCCceEE
Confidence 88899999999998865432223445 3688899999999 4 4666654 69999999998887 44446677899
Q ss_pred EEEe--CCCCceeeeeeeeeeecCCCeEEEEECCC-----------------------CceeecccCCCCceeEeEEcCC
Q 019847 238 GLEW--NRHHKEILSGHGFSASGDGNKLCLWKYPN-----------------------MTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 238 ~~~~--~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-----------------------~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
.+.| +|++..++++ .++|. ++|..+. +..+..+.+ ...|.+++|+||
T Consensus 270 ~va~~~s~d~~~La~a------~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPd 341 (588)
T 2j04_A 270 IIPLNHEKESTILLMS------NKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPD 341 (588)
T ss_dssp EEEETTCSSCEEEEEC------SSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTT
T ss_pred EEEeeeCCCCCEEEEE------cCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCC
Confidence 9999 9999888877 66888 8887631 111222222 446899999999
Q ss_pred CCEEEEEeC
Q 019847 293 GLTVATAGA 301 (335)
Q Consensus 293 ~~~l~~~~~ 301 (335)
|+.+|+++.
T Consensus 342 G~~lA~~~~ 350 (588)
T 2j04_A 342 GYSIAIVYD 350 (588)
T ss_dssp SSEEEEEEE
T ss_pred CCEEEEEEe
Confidence 999998873
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=239.72 Aligned_cols=231 Identities=8% Similarity=0.026 Sum_probs=186.8
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecc---------cCCee
Q 019847 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR---------VSNNV 136 (335)
Q Consensus 66 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~---------~~~~~ 136 (335)
+.++++++++|+.||.|++||+++++.+..+. ...|.++.|+| . +++++.|+.|++|+.. +...+
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 44578899999999999999999999888876 57788999988 4 9999999999999765 33323
Q ss_pred eEEeecCCCCEEEEEeec--CCCEEEEEeCCCeEEEEEccCCCcccceeec-cCCCCCeeEEEecCCCCcEEEEecCCCC
Q 019847 137 TSCIKAHSGEVCGLKWSN--EGNLLASGGDDNVVRIWERSKMSSSKSLHRF-TDHCGGVKALAWSPHQVNVLATGGGRED 213 (335)
Q Consensus 137 ~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d 213 (335)
......|...|.+++|+| +++++++++.||.|++||+++... +... ..+...+.+++|+|++. ++++++ .|
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~~i~~~~~~pdg~-~lasg~--~d 191 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ---YIVHSAKSDVEYSSGVLHKDSL-LLALYS--PD 191 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE---EEEECCCSSCCCCEEEECTTSC-EEEEEC--TT
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE---EEEEecCCCCceEEEEECCCCC-EEEEEc--CC
Confidence 344446778999999999 999999999999999999887543 3333 33556799999999985 666655 89
Q ss_pred CeEEEEECCCCceE-EEeec--CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccC---CCCcee--
Q 019847 214 GCIKIWNVQKGTCI-HGIDA--KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS---SNSRIL-- 285 (335)
Q Consensus 214 ~~i~i~d~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~-- 285 (335)
|.|++||+++++.+ ..+.. ..++.+++|+|++.+++++ + ++.|++||+++.+.+..+.. |...+.
T Consensus 192 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~------~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (343)
T 3lrv_A 192 GILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVE------C-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTV 264 (343)
T ss_dssp SCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEE------E-SSBEEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred CEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEE------e-CCeEEEEEcCCCCcceeecccccccccccce
Confidence 99999999999887 66665 6789999999999999887 4 55999999999887766554 444444
Q ss_pred EeEEcCCCCEEEEEeC-CCcEEEEecCCCCC
Q 019847 286 DLSQSPDGLTVATAGA-DETIRFWEAFGPSG 315 (335)
Q Consensus 286 ~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~ 315 (335)
+++|+|++++|++++. |+.+++|++.....
T Consensus 265 ~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 265 TYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence 5999999999999998 99999999976544
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=235.12 Aligned_cols=250 Identities=16% Similarity=0.142 Sum_probs=183.2
Q ss_pred EEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEE-EE
Q 019847 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHIL-TS 118 (335)
Q Consensus 40 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~ 118 (335)
+|++.+.+. ......|...|++++|+|+|++|++|+.+| +++|++++++....... ..+..+.+.+ +++.+ ++
T Consensus 3 i~s~~~~~~--~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNP--IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLH-RTNYVAFV 76 (355)
T ss_dssp ------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECT-TSSEEEEE
T ss_pred cccccccCC--ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcC-CCCEEEEE
Confidence 455555543 334568999999999999999999998775 88999998876655432 3577888888 55555 67
Q ss_pred eeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEec
Q 019847 119 GSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWS 198 (335)
Q Consensus 119 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 198 (335)
++.|+.|++||..+++.+ ..+. +...|.+++++++ .++++. |+.|++||+.+.. +.+..+.. +...++++
T Consensus 77 ~~~d~~v~iWd~~~~~~~-~~~~-~~~~v~~v~~~~~--~~~~~~-~~~i~i~d~~~~~--~~~~~~~~---~~~~~~~s 146 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDV-SRIK-VDAPVKDLFLSRE--FIVVSY-GDVISVFKFGNPW--KRITDDIR---FGGVCEFS 146 (355)
T ss_dssp CSSTTEEEEEETTTTEEE-EEEE-CSSCEEEEEECSS--EEEEEE-TTEEEEEESSTTC--CBSSCCEE---EEEEEEEE
T ss_pred ECCccEEEEEECCCCcEE-EEEE-CCCceEEEEEcCC--EEEEEE-cCEEEEEECCCCc--eeeEEecc---CCceEEEE
Confidence 888999999999876653 3343 7779999999876 344443 8899999988751 22333332 44456677
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCc----------------eEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCC
Q 019847 199 PHQVNVLATGGGREDGCIKIWNVQKGT----------------CIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGN 261 (335)
Q Consensus 199 ~~~~~~~~~~~g~~d~~i~i~d~~~~~----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (335)
+ ..++++ +|..||.|++||+++++ .+..+. +..++.+++|+|++++++++ +.|+
T Consensus 147 ~--~~la~~-sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~------s~d~ 217 (355)
T 3vu4_A 147 N--GLLVYS-NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC------SQDG 217 (355)
T ss_dssp T--TEEEEE-ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE------ETTC
T ss_pred c--cEEEEe-CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE------eCCC
Confidence 7 344444 23389999999999865 144454 45689999999999999988 7799
Q ss_pred e-EEEEECCCCceeeccc-C-CCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 262 K-LCLWKYPNMTKVGELQ-S-SNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 262 ~-i~i~d~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
. |++||+++++.+..+. + |...|++++|+|++++|++++.|+.|++||+..+.
T Consensus 218 ~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 218 TIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp SEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred CEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 8 9999999999999998 5 99999999999999999999999999999998764
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-32 Score=221.71 Aligned_cols=257 Identities=18% Similarity=0.385 Sum_probs=211.3
Q ss_pred ceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec--ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE
Q 019847 61 PTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE--GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS 138 (335)
Q Consensus 61 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 138 (335)
.++++||+++ +||+| .|++|+|||+++++.+..+. .|...|++++|+| ++++|++|+.||.|++||+++++. ..
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~-~~ 103 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKR-LR 103 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEE-EE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCcee-EE
Confidence 5789999886 77776 49999999999999887664 6778899999999 999999999999999999996654 66
Q ss_pred EeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEE
Q 019847 139 CIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKI 218 (335)
Q Consensus 139 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i 218 (335)
.+.+|...+.++.+ ++..+++++.++.+++|+.... ...+..+.+|...+..+.+++++..++ +++ .|+.|++
T Consensus 104 ~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~--~d~~i~i 176 (318)
T 4ggc_A 104 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA--EHHVATLSGHSQEVCGLRWAPDGRHLA-SGG--NDNLVNV 176 (318)
T ss_dssp EEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSEEE-EEE--TTSCEEE
T ss_pred EecCccceEEEeec--CCCEEEEEecCCceEeeecCCC--ceeEEEEcCccCceEEEEEcCCCCEEE-EEe--cCcceeE
Confidence 67889998887655 5679999999999999997764 345667788999999999999997555 444 7999999
Q ss_pred EECCCCceE-----EEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCC
Q 019847 219 WNVQKGTCI-----HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDG 293 (335)
Q Consensus 219 ~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 293 (335)
||+++++.. ........+..+.++|.+..++.. .+++.++.|++||........... +...+..+.|+|++
T Consensus 177 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 252 (318)
T 4ggc_A 177 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT---GGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHY 252 (318)
T ss_dssp EESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEE---EECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTT
T ss_pred EECCCCcccccceeeecccCCceEEEEecCCCCcEEEE---EecCCCCEEEEEeccccccccccc-ceeeeeeeeecccc
Confidence 999887532 222345679999999988776532 345789999999998888766544 55679999999999
Q ss_pred CEEEEEe--CCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 294 LTVATAG--ADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 294 ~~l~~~~--~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
..+++++ .|+.|++||+.+++....+.+|.+.|.++.++
T Consensus 253 ~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s 293 (318)
T 4ggc_A 253 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS 293 (318)
T ss_dssp TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred cceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 8887764 79999999999998888888999999998875
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=233.49 Aligned_cols=300 Identities=11% Similarity=0.053 Sum_probs=230.1
Q ss_pred ccceeeeecCC--ceE-EEe----cCC----eEEEEEe--cCCceeeEEeecCCCCCceEEEEcC--------------C
Q 019847 17 YYSKVIDWGRN--NVL-AVA----LGP----VLFLWKW--ENGKVKKLLQVPGEDDYPTSVSWSH--------------D 69 (335)
Q Consensus 17 ~~~~~~~~~~~--~~~-~~~----~~~----~i~vw~~--~~~~~~~~~~~~~~~~~v~~~~~~~--------------~ 69 (335)
..+...+|... .++ +++ .+| .+++||+ .+++......+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 35666778763 334 444 367 8999999 8888665566778888888877765 2
Q ss_pred CCEEEEEECC------CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCC---cEEEEecccCCeeeEEe
Q 019847 70 AKTLAVGYMD------SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK---SIINHDVRVSNNVTSCI 140 (335)
Q Consensus 70 ~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~ 140 (335)
+..++.++.+ +.|++||+.. .....+..|...+.+++|+| +++.|++++.++ .|++||+++++. ..+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~--~~l 218 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV--RQV 218 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE--EEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcE--EEe
Confidence 6677776654 7999999974 45677778999999999999 999999999875 999999987654 345
Q ss_pred ecCCCCEEEEEeecCCCEEE-EEeCCC--eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC--e
Q 019847 141 KAHSGEVCGLKWSNEGNLLA-SGGDDN--VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG--C 215 (335)
Q Consensus 141 ~~~~~~i~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~ 215 (335)
..|...+.+++|+|+|+.|+ +++.++ .|++||+++.. ...+..|...+.+++|+|+++.+++++. .++ .
T Consensus 219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~spdg~~l~~~s~--~~g~~~ 292 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQNLAFTSD--QAGRPQ 292 (415)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC----EEECCCCSSCEEEEEECTTSSEEEEEEC--TTSSCE
T ss_pred ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC----EEeCcCCCCcccceEECCCCCEEEEEEC--CCCCcE
Confidence 67888999999999999888 566555 49999987642 3456678888999999999987777663 344 7
Q ss_pred EEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCE
Q 019847 216 IKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLT 295 (335)
Q Consensus 216 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 295 (335)
|++||+.+++..........+..++|+|+|++++.+.. ...+..|.+||+.+++.. .+..+. .+.+++|+|||++
T Consensus 293 i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~---~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~ 367 (415)
T 2hqs_A 293 VYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS---NGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTM 367 (415)
T ss_dssp EEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEE---CSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSE
T ss_pred EEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEEC---cCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCE
Confidence 88889988875443344567889999999999987631 011468999999988774 455554 7899999999999
Q ss_pred EEEEeCCC---cEEEEecCCCCCCCCccccccccccceec
Q 019847 296 VATAGADE---TIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 296 l~~~~~dg---~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
|++++.|+ .|++||+.+. ....+..|...|.++.++
T Consensus 368 l~~~s~~~~~~~l~~~d~~g~-~~~~l~~~~~~v~~~~~~ 406 (415)
T 2hqs_A 368 VIYSSSQGMGSVLNLVSTDGR-FKARLPATDGQVKFPAWS 406 (415)
T ss_dssp EEEEEEETTEEEEEEEETTSC-CEEECCCSSSEEEEEEEC
T ss_pred EEEEEcCCCccEEEEEECCCC-cEEEeeCCCCCCcCCccc
Confidence 99998877 7999998754 344566777888888776
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=234.59 Aligned_cols=268 Identities=12% Similarity=0.083 Sum_probs=212.7
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEe-----eecccccceeEeeecCC
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR-----NLEGHHRRVATSSWNHW 111 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~~~v~~~~~~~~ 111 (335)
.|..+|..++.......+..+ ..+.+++|+|++.++++++.++.|++||+.+++... .+..|...+.+++|++
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~- 179 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE- 179 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-
T ss_pred EEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-
Confidence 444444444644444455444 456799999977777888888999999999998887 4557888999999988
Q ss_pred CCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEE-eCCCeEEEEEccCCCcccceeeccCCCC
Q 019847 112 NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASG-GDDNVVRIWERSKMSSSKSLHRFTDHCG 190 (335)
Q Consensus 112 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 190 (335)
++.++++++.|+.|++||+++.+. ...+..|...+.+++|+|+++.++++ +.|+.|++||+++. +.+..+.. ..
T Consensus 180 ~~~~~~s~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~---~~~~~~~~-~~ 254 (433)
T 3bws_A 180 HNELWVSQMQANAVHVFDLKTLAY-KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK---LEIRKTDK-IG 254 (433)
T ss_dssp GTEEEEEEGGGTEEEEEETTTCCE-EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEECCC-CS
T ss_pred CCEEEEEECCCCEEEEEECCCceE-EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC---cEEEEecC-CC
Confidence 899999999999999999986654 45566789999999999999988554 47999999998764 33444443 45
Q ss_pred CeeEEEecCCCCcEEEEecCC-----CCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEE
Q 019847 191 GVKALAWSPHQVNVLATGGGR-----EDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265 (335)
Q Consensus 191 ~v~~~~~~~~~~~~~~~~~g~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 265 (335)
.+.+++|+|+++.+++++.+. .|+.|++||+++++.+..+.....+..++|+|+++.++.. ++.++.|++
T Consensus 255 ~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-----~~~~~~v~v 329 (433)
T 3bws_A 255 LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVS-----DMCCSKIEV 329 (433)
T ss_dssp EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEE-----ETTTTEEEE
T ss_pred CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEE-----ecCCCEEEE
Confidence 689999999998777665211 3789999999999988888777788999999999866443 267999999
Q ss_pred EECCCCceeecccCCCCceeEeEEcCCCCEEEEEeC---------------CCcEEEEecCCCCCCC
Q 019847 266 WKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA---------------DETIRFWEAFGPSGDE 317 (335)
Q Consensus 266 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------------dg~v~iw~~~~~~~~~ 317 (335)
||+.+++.+..+. +...+.+++|+|++++|++++. ||.|++||+...+...
T Consensus 330 ~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 330 YDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE 395 (433)
T ss_dssp EETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred EECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE
Confidence 9999998887775 5667999999999999988876 5799999998765443
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=235.77 Aligned_cols=230 Identities=10% Similarity=0.097 Sum_probs=172.4
Q ss_pred ceEEEecCCeEEEEEecCCceeeE---EeecCCCCCceEEEEcC--------CCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKL---LQVPGEDDYPTSVSWSH--------DAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~---~~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
.+++++.|++|++||.++++.... ..+.+|.+.|++++|+| ++++||+|+.|++|+|||+.++..+..+
T Consensus 103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~ 182 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG 182 (393)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee
Confidence 466777899999999998876433 23578999999999998 7899999999999999999998888888
Q ss_pred cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE------------------------EeecCCCCEEEEEe
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS------------------------CIKAHSGEVCGLKW 152 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~------------------------~~~~~~~~i~~~~~ 152 (335)
..|...+.+++|+|.+.++|++++.|++|++||++++..... ...+|...+.++.|
T Consensus 183 ~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~ 262 (393)
T 4gq1_A 183 YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRW 262 (393)
T ss_dssp EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEE
T ss_pred cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeee
Confidence 889999999999994456899999999999999986543211 12357788899998
Q ss_pred e-cCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCC-------------------eeEEEecCCCCcEEEEecCCC
Q 019847 153 S-NEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGG-------------------VKALAWSPHQVNVLATGGGRE 212 (335)
Q Consensus 153 ~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------------------v~~~~~~~~~~~~~~~~~g~~ 212 (335)
+ |+++.+++++.|+.+++||+....... .+..|... +..+.+.+.+..++++++ .
T Consensus 263 ~~~dg~~l~s~s~d~~i~vwd~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs--~ 337 (393)
T 4gq1_A 263 IGSDGSGILAMCKSGAWLRWNLFANNDYN---EISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS--Q 337 (393)
T ss_dssp ETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET--T
T ss_pred ecCCCCEEEEEeCCCCEEEEECccCCCCc---eEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC--C
Confidence 7 699999999999999999987643322 22222222 222333333445666665 8
Q ss_pred CCeEEEEECCCCceEEEe-ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC
Q 019847 213 DGCIKIWNVQKGTCIHGI-DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269 (335)
Q Consensus 213 d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 269 (335)
||.|++||+.+++..... .++.+|.+++|+|+|++|+++ + ++.+.+|.+.
T Consensus 338 Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~a------s-~~Gv~lvrL~ 388 (393)
T 4gq1_A 338 HGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIA------T-EGSVLLTRLM 388 (393)
T ss_dssp TTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEE------E-SSEEEEEEEG
T ss_pred CCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEE------e-CCCeEEEEEe
Confidence 999999999998876654 456789999999999999987 3 5567676653
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-30 Score=219.56 Aligned_cols=281 Identities=11% Similarity=0.095 Sum_probs=216.5
Q ss_pred cceeeeecCC-c-eEE-EecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCceeE
Q 019847 18 YSKVIDWGRN-N-VLA-VALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETSKLV 93 (335)
Q Consensus 18 ~~~~~~~~~~-~-~~~-~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~ 93 (335)
.+.+++|+++ . +++ ++.++.|++||+.+++....+. .+ ..+.+++|+|++++|++++ .++.|++||+.+++.+
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~--~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~ 109 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP--AG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA 109 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--CS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE--CC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEE
Confidence 4678999885 3 434 4479999999999998765554 33 3899999999999886555 5699999999999988
Q ss_pred eeecccccceeEeeecCCCCCEE-EEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEE-EEEeCCCeEEEE
Q 019847 94 RNLEGHHRRVATSSWNHWNGHIL-TSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL-ASGGDDNVVRIW 171 (335)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iw 171 (335)
..+.. ...+.+++|+| +++.+ ++++.++.|++||+.+++. ...+.. ...+.+++|+|+++++ ++++.++.|++|
T Consensus 110 ~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~ 185 (391)
T 1l0q_A 110 GTVKT-GKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAV-INTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVI 185 (391)
T ss_dssp EEEEC-SSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEE-EEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEeC-CCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcE-EEEEec-CCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence 88774 45789999999 77766 7888899999999986654 444444 4567999999999887 567788999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (335)
|+++.. ....+. +...+.+++|+|++..+++++.+..++.|++||+++++.+..+..+..+.+++|+|+++.++.+
T Consensus 186 d~~~~~---~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s 261 (391)
T 1l0q_A 186 DTVTNS---VIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVA 261 (391)
T ss_dssp ETTTTE---EEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEE
T ss_pred ECCCCe---EEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEE
Confidence 987643 333333 5567899999999987777652224899999999999999999888889999999999988433
Q ss_pred eeeeeecCCCeEEEEECCCCceeecccCCCCcee---EeE------------EcCCC----------CEEEEEeCCCcEE
Q 019847 252 HGFSASGDGNKLCLWKYPNMTKVGELQSSNSRIL---DLS------------QSPDG----------LTVATAGADETIR 306 (335)
Q Consensus 252 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~---~~~------------~~~~~----------~~l~~~~~dg~v~ 306 (335)
++.++.|++||+.+++.+..+..|..+.. .+. |+.+. ..+...+.|...+
T Consensus 262 -----~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (391)
T 1l0q_A 262 -----LSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEW 336 (391)
T ss_dssp -----ETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEE
T ss_pred -----cCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEE
Confidence 26799999999999998888776654321 112 22221 3456667789999
Q ss_pred EEecCCCC
Q 019847 307 FWEAFGPS 314 (335)
Q Consensus 307 iw~~~~~~ 314 (335)
+|++..+.
T Consensus 337 ~W~~~~g~ 344 (391)
T 1l0q_A 337 KWDFGDGS 344 (391)
T ss_dssp EEECSSSC
T ss_pred EEECCCCc
Confidence 99997764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.6e-29 Score=205.99 Aligned_cols=273 Identities=9% Similarity=0.044 Sum_probs=204.6
Q ss_pred eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC-CCcEEEEeCCCcee-EeeecccccceeEe
Q 019847 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM-DSKLQLWDAETSKL-VRNLEGHHRRVATS 106 (335)
Q Consensus 29 ~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~-~~~~~~~~~~v~~~ 106 (335)
+++.+.++.|.+||.++++....... +...+ .++|+|+++++++++. ++.|.+||+.+++. ...+..+..+..++
T Consensus 13 ~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 89 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDTLEILNQITL--GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADV 89 (331)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEEC--CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCE
T ss_pred EEEecCCCeEEEEeCcccceeeeEEc--cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccce
Confidence 44455789999999999988666553 34556 9999999997777765 88999999999987 77777666666559
Q ss_pred eecCCCCCEEEEeeCCC---cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEE-eCCCe-EEEEEccCCCcccc
Q 019847 107 SWNHWNGHILTSGSKDK---SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASG-GDDNV-VRIWERSKMSSSKS 181 (335)
Q Consensus 107 ~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~-i~iwd~~~~~~~~~ 181 (335)
+|+| ++++++++..++ .|.+||+.+++. ...+. ......+++|+|++++++++ ..++. |.+|++........
T Consensus 90 ~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~ 166 (331)
T 3u4y_A 90 DITP-DDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD 166 (331)
T ss_dssp EECT-TSSEEEECCCSSSSCEEEEEETTTTEE-EEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred EECC-CCCEEEEecCCCCcccEEEEECCCCCe-EEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee
Confidence 9999 899888666553 899999986654 44443 34567999999999865555 55578 99999875322111
Q ss_pred e-eeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce---EEEeecCCcEeEEEeCCCCceeeeeeeeeee
Q 019847 182 L-HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC---IHGIDAKAQICGLEWNRHHKEILSGHGFSAS 257 (335)
Q Consensus 182 ~-~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (335)
. .........+..++|+|+++++++++. .++.|++||+.+++. +..+..+..+..++|+|+|+++++..
T Consensus 167 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~----- 239 (331)
T 3u4y_A 167 TGQEFISGGTRPFNITFTPDGNFAFVANL--IGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLT----- 239 (331)
T ss_dssp EEEEEECSSSSEEEEEECTTSSEEEEEET--TTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEEC-----
T ss_pred cCCccccCCCCccceEECCCCCEEEEEeC--CCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEE-----
Confidence 1 111233456789999999988888775 789999999999988 88888888889999999999876542
Q ss_pred cCCCeEEEEECCCCce--eecccCC----CCc---eeEeEEcCCCCEEEEEe-CCCcEEEEecCCCC
Q 019847 258 GDGNKLCLWKYPNMTK--VGELQSS----NSR---ILDLSQSPDGLTVATAG-ADETIRFWEAFGPS 314 (335)
Q Consensus 258 ~~~~~i~i~d~~~~~~--~~~~~~~----~~~---i~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~ 314 (335)
..++.|.+||..+++. +..+..+ ... ...++|+||+++|++++ .++.|.+||+..+.
T Consensus 240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 240 ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 4578899999998877 3332221 222 35589999999886655 46699999998754
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=203.75 Aligned_cols=274 Identities=11% Similarity=0.186 Sum_probs=196.3
Q ss_pred ceEEE-ecCCeEEEEEec-CCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC-CcEEEEeCC--Cce--eEeeecccc
Q 019847 28 NVLAV-ALGPVLFLWKWE-NGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD-SKLQLWDAE--TSK--LVRNLEGHH 100 (335)
Q Consensus 28 ~~~~~-~~~~~i~vw~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iw~~~--~~~--~~~~~~~~~ 100 (335)
.++++ +.++.|++|+++ +++...... ..+...+.+++|+|++++|++++.+ +.|.+|++. +++ .+..+..+
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 83 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP- 83 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-
Confidence 34444 578999999996 344333333 3466788999999999999998876 999999997 554 33445433
Q ss_pred cceeEeeecCCCCCEEEEee-CCCcEEEEecccCC--eeeEEeecCCCCEEEEEeecCCCEEEEEe-CCCeEEEEEccCC
Q 019847 101 RRVATSSWNHWNGHILTSGS-KDKSIINHDVRVSN--NVTSCIKAHSGEVCGLKWSNEGNLLASGG-DDNVVRIWERSKM 176 (335)
Q Consensus 101 ~~v~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 176 (335)
..+..++|+| +++.|++++ .++.|.+||+..+. ....... ....+.+++|+|+++++++++ .++.|++||+...
T Consensus 84 ~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 161 (343)
T 1ri6_A 84 GSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD 161 (343)
T ss_dssp SCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CCCcEEEEcC-CCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence 3889999999 888776655 58899999995221 2233333 345688999999999888887 8999999999762
Q ss_pred Cccccee--ecc-CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC--Cce--EEEee---c----CCcEeEEEeC
Q 019847 177 SSSKSLH--RFT-DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK--GTC--IHGID---A----KAQICGLEWN 242 (335)
Q Consensus 177 ~~~~~~~--~~~-~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~--~~~~~---~----~~~~~~~~~~ 242 (335)
....... ... .....+..++|+|+++++++++. .++.|.+||+.. ++. ...+. . ...+..++|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~--~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 239 (343)
T 1ri6_A 162 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE--LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT 239 (343)
T ss_dssp SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred CceeeecccccccCCCCCcceEEECCCCCEEEEEeC--CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC
Confidence 2222221 222 23456889999999988888775 789999999953 433 22222 1 1246689999
Q ss_pred CCCceeeeeeeeeeecCCCeEEEEECC----CCceeecccCCCCceeEeEEcCCCCEEEEEe-CCCcEEEEecCCC
Q 019847 243 RHHKEILSGHGFSASGDGNKLCLWKYP----NMTKVGELQSSNSRILDLSQSPDGLTVATAG-ADETIRFWEAFGP 313 (335)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~ 313 (335)
|+++++++. ...++.|.+||+. +.+.+..+..+.. +..++|+|++++|++++ .++.|.+|+++..
T Consensus 240 ~dg~~l~v~-----~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~ 309 (343)
T 1ri6_A 240 PDGRHLYAC-----DRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGE 309 (343)
T ss_dssp TTSSEEEEE-----ETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred CCCCEEEEE-----ecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 999988654 2568999999998 2344555555544 88999999999888887 6899999977643
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-28 Score=208.36 Aligned_cols=251 Identities=14% Similarity=0.067 Sum_probs=194.9
Q ss_pred CCceEEEecC------CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCC---cEEEEeCCCceeEeee
Q 019847 26 RNNVLAVALG------PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDS---KLQLWDAETSKLVRNL 96 (335)
Q Consensus 26 ~~~~~~~~~~------~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~ 96 (335)
+.+++.++.+ +.|++||++.+.. ..+.+|...+.+++|+|+|++|++++.++ .|++||+.+++.. .+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~---~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l 218 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QV 218 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSC---EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCC---EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Ee
Confidence 3456666654 7999999986553 33446788999999999999999999875 9999999998775 46
Q ss_pred cccccceeEeeecCCCCCEEE-EeeCCCc--EEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC-CC--eEEE
Q 019847 97 EGHHRRVATSSWNHWNGHILT-SGSKDKS--IINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD-DN--VVRI 170 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~-~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i 170 (335)
..+...+.+++|+| +++.|+ +++.++. |++||+.++.. ..+..|...+.+++|+|++++|++++. ++ .|++
T Consensus 219 ~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~ 295 (415)
T 2hqs_A 219 ASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK 295 (415)
T ss_dssp ECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred ecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCE--EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEE
Confidence 66788999999999 888776 6666665 99999986553 456678889999999999999998886 44 6778
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeee
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS 250 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (335)
||+.... ...+..+...+.+++|+|+++.+++++....+..|++||+.+++.. .+..+..+.+++|+|+|+.++.
T Consensus 296 ~d~~~~~----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~ 370 (415)
T 2hqs_A 296 VNINGGA----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIY 370 (415)
T ss_dssp EETTSSC----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEE
T ss_pred EECCCCC----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEE
Confidence 8877543 2334446677899999999987777664111358999999988774 4444458899999999999887
Q ss_pred eeeeeeecCCC--eEEEEECCCCceeecccCCCCceeEeEEcCCCC
Q 019847 251 GHGFSASGDGN--KLCLWKYPNMTKVGELQSSNSRILDLSQSPDGL 294 (335)
Q Consensus 251 ~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 294 (335)
+. ..++ .|++||+. +.....+..|.+.|.+++|+|.-.
T Consensus 371 ~s-----~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 371 SS-----SQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EE-----EETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred EE-----cCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 63 2222 89999986 555678889999999999999643
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-28 Score=214.12 Aligned_cols=291 Identities=11% Similarity=0.078 Sum_probs=220.9
Q ss_pred ceeeeecCC--ceEEEecCCeEEEEEe--cCCceeeEEeecCCCCCceEEEEcC----CCCEEEEEEC-CCcEEEEeCCC
Q 019847 19 SKVIDWGRN--NVLAVALGPVLFLWKW--ENGKVKKLLQVPGEDDYPTSVSWSH----DAKTLAVGYM-DSKLQLWDAET 89 (335)
Q Consensus 19 ~~~~~~~~~--~~~~~~~~~~i~vw~~--~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-dg~i~iw~~~~ 89 (335)
+..++++++ .+++++.++.|.+||+ .+++....+. +...+..++|+| +|+++++++. +++|.+||..+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~---~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t 257 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK---IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 257 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE---CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe---cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc
Confidence 556778774 5777888999999999 7777654443 345679999999 9999999884 89999999999
Q ss_pred ceeEeeeccc----------cc-ceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCE
Q 019847 90 SKLVRNLEGH----------HR-RVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNL 158 (335)
Q Consensus 90 ~~~~~~~~~~----------~~-~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 158 (335)
++++..+..+ .. .+..+.++|..+.++++...++.|.+||+.+.+.+......+...+..+.|+|++++
T Consensus 258 ~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~ 337 (543)
T 1nir_A 258 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRY 337 (543)
T ss_dssp CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCE
T ss_pred cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCE
Confidence 9998887642 22 688999999566677888889999999998765443223346677889999999998
Q ss_pred EEEEe-CCCeEEEEEccCCCcccceeecc----CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC-------Cce
Q 019847 159 LASGG-DDNVVRIWERSKMSSSKSLHRFT----DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK-------GTC 226 (335)
Q Consensus 159 l~~~~-~dg~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-------~~~ 226 (335)
|++++ .+++|.+||+.+++ .+..+. .|.+....+ ++|++..+++++. ..|++|.+||+.+ .++
T Consensus 338 l~va~~~~~~v~v~D~~tg~---l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~-~~d~~V~v~d~~~~~~~~~~~~~ 412 (543)
T 1nir_A 338 FMTAANNSNKVAVIDSKDRR---LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSH-LGDGSISLIGTDPKNHPQYAWKK 412 (543)
T ss_dssp EEEEEGGGTEEEEEETTTTE---EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTSE
T ss_pred EEEEecCCCeEEEEECCCCe---EEEeeccCCCCCCCCCccc-CCCCCccEEEecc-CCCceEEEEEeCCCCCchhcCeE
Confidence 77655 58899999988754 333333 254433333 5787556777652 1479999999998 889
Q ss_pred EEEeecC-CcEeEEEeCCCCceeeeeeeeeeec---CCCeEEEEECCCCcee-ecc--------cCCCCceeEeEEcCCC
Q 019847 227 IHGIDAK-AQICGLEWNRHHKEILSGHGFSASG---DGNKLCLWKYPNMTKV-GEL--------QSSNSRILDLSQSPDG 293 (335)
Q Consensus 227 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~i~d~~~~~~~-~~~--------~~~~~~i~~~~~~~~~ 293 (335)
+++++.+ ..+..+.++|++++++++..+ +. .++.|.+||+.+++.. ..+ ..+...+..+.|+|+|
T Consensus 413 v~~l~~~g~~~~~v~~~pdg~~l~v~~~~--~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g 490 (543)
T 1nir_A 413 VAELQGQGGGSLFIKTHPKSSHLYVDTTF--NPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG 490 (543)
T ss_dssp EEEEECSCSCCCCEECCTTCCEEEECCTT--CSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSS
T ss_pred EEEEEcCCCCceEEEcCCCCCcEEEecCC--CCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCC
Confidence 9999875 467889999999999886211 01 1679999999998876 332 3566789999999999
Q ss_pred CEEEEEe-----CCCcEEEEecCCCCCCCCc
Q 019847 294 LTVATAG-----ADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 294 ~~l~~~~-----~dg~v~iw~~~~~~~~~~~ 319 (335)
+.|+++. .|+.|.|||..+.+.....
T Consensus 491 ~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i 521 (543)
T 1nir_A 491 DEVWFSVWNGKNDSSALVVVDDKTLKLKAVV 521 (543)
T ss_dssp SEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred CEEEEEeecCCCCCCeEEEEECCCceEEEee
Confidence 9998762 4799999999988765443
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-28 Score=214.08 Aligned_cols=273 Identities=10% Similarity=0.102 Sum_probs=211.7
Q ss_pred eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeC--CCceeEeeecccccceeEe
Q 019847 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDA--ETSKLVRNLEGHHRRVATS 106 (335)
Q Consensus 29 ~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~~~~~~~v~~~ 106 (335)
+++...++.|.+||..+++....+.. ++. +..++|+|+|++|++++.|+.|++||+ .+++.+..+. +...+..+
T Consensus 152 ~vs~~~d~~V~v~D~~t~~~~~~i~~-g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~v 227 (543)
T 1nir_A 152 SVTLRDAGQIALVDGDSKKIVKVIDT-GYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSV 227 (543)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEEC-STT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEE
T ss_pred EEEEcCCCeEEEEECCCceEEEEEec-Ccc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceE
Confidence 44445789999999999988665543 333 889999999999999999999999999 8888888887 45678999
Q ss_pred eecCC---CCCEEEEee-CCCcEEEEecccCCeeeEEeec----------C-CCCEEEEEeecCCC-EEEEEeCCCeEEE
Q 019847 107 SWNHW---NGHILTSGS-KDKSIINHDVRVSNNVTSCIKA----------H-SGEVCGLKWSNEGN-LLASGGDDNVVRI 170 (335)
Q Consensus 107 ~~~~~---~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~----------~-~~~i~~~~~~~~~~-~l~~~~~dg~i~i 170 (335)
+|+|. +++++++++ .+++|.+||..+.+.+ ..+.. | ...+..+.++|++. ++++...++.|.+
T Consensus 228 a~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~-~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~v 306 (543)
T 1nir_A 228 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK-QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL 306 (543)
T ss_dssp EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE-EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred EeCCCcCCCCCEEEEEEccCCeEEEEeccccccc-eeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEE
Confidence 99972 566777766 5899999999876653 33332 2 23789999999665 5566677899999
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC-----cEeEEEeCCC-
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA-----QICGLEWNRH- 244 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~- 244 (335)
||+.+..... +..+ .+...+..+.|+|+++++++++. .+++|.+||+.+++++..++... ....+ ++|+
T Consensus 307 vd~~~~~~l~-~~~i-~~~~~~~~~~~spdg~~l~va~~--~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~ 381 (543)
T 1nir_A 307 VNYKDIDNLT-VTSI-GAAPFLHDGGWDSSHRYFMTAAN--NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKY 381 (543)
T ss_dssp EECTTSSSCE-EEEE-ECCSSCCCEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTT
T ss_pred EEecCCCcce-eEEe-ccCcCccCceECCCCCEEEEEec--CCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCC
Confidence 9988654322 2233 24566888999999998888776 78999999999999988887421 12222 4677
Q ss_pred CceeeeeeeeeeecCCCeEEEEECCC-------CceeecccCCCCceeEeEEcCCCCEEEEEe-------CCCcEEEEec
Q 019847 245 HKEILSGHGFSASGDGNKLCLWKYPN-------MTKVGELQSSNSRILDLSQSPDGLTVATAG-------ADETIRFWEA 310 (335)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~i~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~dg~v~iw~~ 310 (335)
+..++++. ..+++|.+||+.+ .+.++++..|...+..++++|++++|++++ .++.|.+||+
T Consensus 382 g~~~~s~~-----~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 382 GPVWSTSH-----LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp EEEEEEEB-----SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred ccEEEecc-----CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence 44444431 2589999999998 889999999988889999999999999987 2779999999
Q ss_pred CCCCCC
Q 019847 311 FGPSGD 316 (335)
Q Consensus 311 ~~~~~~ 316 (335)
.+.+..
T Consensus 457 ~~~~~~ 462 (543)
T 1nir_A 457 KNLDAK 462 (543)
T ss_dssp TCTTSC
T ss_pred CCCCCC
Confidence 988765
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-29 Score=201.31 Aligned_cols=261 Identities=13% Similarity=0.105 Sum_probs=196.1
Q ss_pred ecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC-ceeEeeeccc-ccceeEeeecC
Q 019847 33 ALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET-SKLVRNLEGH-HRRVATSSWNH 110 (335)
Q Consensus 33 ~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~-~~~v~~~~~~~ 110 (335)
+.++.|++||+.+++..... .|...|.+++|+|++++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~---~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVW---QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEE---EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CcceeEEEEeCCCCceeeec---cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 36789999999998865433 4678899999999999999986 78999999999 8777766555 37889999999
Q ss_pred CCCCEEEEee--CCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEE-EEeCCCeEEEEEccCCCcccceeeccC
Q 019847 111 WNGHILTSGS--KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLA-SGGDDNVVRIWERSKMSSSKSLHRFTD 187 (335)
Q Consensus 111 ~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~ 187 (335)
+++.|++++ .++...+|.++........+..+ ..+..++|+|++++|+ ++..++.+++|+++... .....+..
T Consensus 95 -dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~ 170 (297)
T 2ojh_A 95 -DGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS--GVETRLTH 170 (297)
T ss_dssp -TSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT--CCEEECCC
T ss_pred -CCCEEEEEEeCCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCC--CcceEccc
Confidence 999999988 44566666654332223333333 3589999999999887 77889999999975422 23445566
Q ss_pred CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC-CCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeee-----cCC
Q 019847 188 HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ-KGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSAS-----GDG 260 (335)
Q Consensus 188 ~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 260 (335)
+...+.+++|+|+++.+++++. .++.+++|++. .+.....+.. ...+..+.|+|++++++.+..-... ..+
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 248 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSS--RTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLD 248 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEEC--TTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEE
T ss_pred CCCccccceECCCCCEEEEEec--CCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCc
Confidence 7788999999999987777764 68889999875 4445555543 4578889999999998876320000 012
Q ss_pred CeEEEEECCCCce--eecccCCCCceeEeEEcCCCCEEEEEeCCC
Q 019847 261 NKLCLWKYPNMTK--VGELQSSNSRILDLSQSPDGLTVATAGADE 303 (335)
Q Consensus 261 ~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 303 (335)
+.|.+||+.+++. +..+..|...+..++|+|++++|++++.|.
T Consensus 249 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 249 VRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 6799999988765 344447788899999999999998887654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=224.54 Aligned_cols=282 Identities=11% Similarity=0.069 Sum_probs=210.6
Q ss_pred cceeeeecCC--ceEEEec-CC-----eEEEEEecCCceeeEEeecCCC----------------------CCceEEEEc
Q 019847 18 YSKVIDWGRN--NVLAVAL-GP-----VLFLWKWENGKVKKLLQVPGED----------------------DYPTSVSWS 67 (335)
Q Consensus 18 ~~~~~~~~~~--~~~~~~~-~~-----~i~vw~~~~~~~~~~~~~~~~~----------------------~~v~~~~~~ 67 (335)
.+..++|+++ .+++++. ++ .|++||+.+++.........+. ..+.+++|+
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 4678999985 3555666 77 8999999999876665543333 337899999
Q ss_pred CCCCEEEEEECCCcEEEEeCCCce--eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCC
Q 019847 68 HDAKTLAVGYMDSKLQLWDAETSK--LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSG 145 (335)
Q Consensus 68 ~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 145 (335)
|||++|++++. +.|++||+.+++ ....+..+...+..++|+| +++.|+.++ ++.|++||+.++.. ......+..
T Consensus 118 pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~g~~-~~~~~~~~~ 193 (741)
T 2ecf_A 118 PDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLASGRQ-MQLTADGST 193 (741)
T ss_dssp TTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTTTEE-EECCCCCCS
T ss_pred CCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEecCCCCE-EEeccCCcc
Confidence 99999999986 899999999873 4556677888899999999 999998887 46899999986543 333333333
Q ss_pred C----------------EEEEEeecCCCEEEEEeCCC---------------------------------eEEEEEccC-
Q 019847 146 E----------------VCGLKWSNEGNLLASGGDDN---------------------------------VVRIWERSK- 175 (335)
Q Consensus 146 ~----------------i~~~~~~~~~~~l~~~~~dg---------------------------------~i~iwd~~~- 175 (335)
. +..++|+|||++|++++.|+ .|++||+.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 2 47799999999999998776 788999876
Q ss_pred CCcccceeeccCCCCCeeEEEecCCCCcEEEEec--CCCCCeEEEEECCCCceEEEeecCC-----cEeEEEeCCCCcee
Q 019847 176 MSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG--GREDGCIKIWNVQKGTCIHGIDAKA-----QICGLEWNRHHKEI 248 (335)
Q Consensus 176 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--g~~d~~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 248 (335)
... ..+.....|...+..++| |||+.+++... +..+..|++||+.+++....+..+. .+..+.|+|+|+.+
T Consensus 274 ~~~-~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~ 351 (741)
T 2ecf_A 274 AQT-QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSIL 351 (741)
T ss_dssp CCC-EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEE
T ss_pred Cce-EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEE
Confidence 432 112111246678999999 99987776642 2246789999999998877665433 35689999999966
Q ss_pred eeeeeeeeecCCCeEEEEECC-CCceeecccCCCCceeEe-EEcCCCCEEE-EEeCCC--cEEEEecCC
Q 019847 249 LSGHGFSASGDGNKLCLWKYP-NMTKVGELQSSNSRILDL-SQSPDGLTVA-TAGADE--TIRFWEAFG 312 (335)
Q Consensus 249 ~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~i~~~-~~~~~~~~l~-~~~~dg--~v~iw~~~~ 312 (335)
+++ +.++.+++|.+. +++ ...+..|...+..+ .|+|+++.|+ +++.++ .+++|++..
T Consensus 352 ~~~------~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 352 WSS------ERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EEE------CTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred EEe------cCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 655 567877777665 344 67777888888887 5999998775 455555 899999875
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-28 Score=219.86 Aligned_cols=283 Identities=11% Similarity=0.135 Sum_probs=202.4
Q ss_pred cceeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeecCCCC---CceEEEEcCCCCEEEEEECC---------CcEEE
Q 019847 18 YSKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDD---YPTSVSWSHDAKTLAVGYMD---------SKLQL 84 (335)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------g~i~i 84 (335)
....++|+++ .+++.+.|+.|++||+.+++....+ ..|.. .|.+++|+|||++|++++.+ +.+.+
T Consensus 18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~--~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLI--EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEE--CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred cccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEe--ccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 3567899984 5666678999999999999865443 44544 48999999999999999764 78889
Q ss_pred EeCCCceeEeeec---ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCC---------------
Q 019847 85 WDAETSKLVRNLE---GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGE--------------- 146 (335)
Q Consensus 85 w~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~--------------- 146 (335)
||+.+++. ..+. .+...+..++|+| +++.|+.++. +.|++||+.++.. ......+...
T Consensus 96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~v~~ee~ 171 (723)
T 1xfd_A 96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDWLYEEEI 171 (723)
T ss_dssp EESSSCCC-EECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCHHHHHTT
T ss_pred EECCCCce-EeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccceeEEEEe
Confidence 99998876 3333 3444589999999 9999998886 7999999986654 3333333332
Q ss_pred ---EEEEEeecCCCEEEEEeCCC----------------------------------eEEEEEccCCCcccceeeccC--
Q 019847 147 ---VCGLKWSNEGNLLASGGDDN----------------------------------VVRIWERSKMSSSKSLHRFTD-- 187 (335)
Q Consensus 147 ---i~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~~-- 187 (335)
+.+++|+|||+.|++++.|+ .|++||+.+... ...+..
T Consensus 172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~---~~~l~~~~ 248 (723)
T 1xfd_A 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH---DLEMMPPD 248 (723)
T ss_dssp SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC---CEECCCCC
T ss_pred ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce---eEEeeCCc
Confidence 37899999999999987653 799999876542 222332
Q ss_pred ----CCCCeeEEEecCCCCcEEEEec-CCCCCeEEEEECCCCceEEEeecC--CcE----eEEEeCCCCceeeeeeeeee
Q 019847 188 ----HCGGVKALAWSPHQVNVLATGG-GREDGCIKIWNVQKGTCIHGIDAK--AQI----CGLEWNRHHKEILSGHGFSA 256 (335)
Q Consensus 188 ----~~~~v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~ 256 (335)
+...+..++|+|||+.+++... +..+..|++||+.+++....+... ..+ ..+.|+|+|+.++...
T Consensus 249 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~---- 324 (723)
T 1xfd_A 249 DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIR---- 324 (723)
T ss_dssp CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEE----
T ss_pred cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEE----
Confidence 2567899999999976544432 113468999999999876655432 222 3789999999887531
Q ss_pred ecCCC------eEEEEE-CCCCce--eecccCCCCceeE-eEEcCCCCEEEEEeCC---CcEEEEecCCC
Q 019847 257 SGDGN------KLCLWK-YPNMTK--VGELQSSNSRILD-LSQSPDGLTVATAGAD---ETIRFWEAFGP 313 (335)
Q Consensus 257 ~~~~~------~i~i~d-~~~~~~--~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d---g~v~iw~~~~~ 313 (335)
+..++ .|.+|| ..+++. ...+..+...+.. ++|+|||+.|+..+.+ +.+++|++...
T Consensus 325 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 325 AIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred ecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 24455 577777 344441 4555544444554 6999999999766555 78999998754
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-27 Score=195.58 Aligned_cols=274 Identities=10% Similarity=0.108 Sum_probs=192.8
Q ss_pred CCeEEEEEec--CCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC---CCcEEEEeCCCce--eEeeecccccceeEee
Q 019847 35 GPVLFLWKWE--NGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM---DSKLQLWDAETSK--LVRNLEGHHRRVATSS 107 (335)
Q Consensus 35 ~~~i~vw~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~ 107 (335)
++.|.+|+++ +++...... ..+...+..++|+|+|+ |++++. ++.|.+|++.+++ .+..+..+...+..++
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~-~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGL-LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEE-EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCCEEEEEEcCCCCeEEEeee-eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 4578888776 455443322 33456678899999999 555544 6899999997765 4444455677899999
Q ss_pred ecCCCCCEEEEee-CCCcEEEEecccCCeee--EEeec---------CCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC
Q 019847 108 WNHWNGHILTSGS-KDKSIINHDVRVSNNVT--SCIKA---------HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 108 ~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~--~~~~~---------~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 175 (335)
|+| +++.|++++ .++.+.+|++....... ..... +...+.+++|+|+++++++...++.|++|++..
T Consensus 93 ~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 93 VDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp EET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred ECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence 999 888888777 78999999996433221 11211 123488999999999666666788999999983
Q ss_pred CCcccceeeccC-CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC--Cce--EEEeec-C------CcEeEEEeCC
Q 019847 176 MSSSKSLHRFTD-HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK--GTC--IHGIDA-K------AQICGLEWNR 243 (335)
Q Consensus 176 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~--~~~~~~-~------~~~~~~~~~~ 243 (335)
.........+.. ....+..++|+|+++.++++.. .++.+.+|++.. ++. +..+.. . ..+..++|+|
T Consensus 172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE--LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeC--CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 222222222222 2335788999999987888765 789999999874 543 222221 1 3488899999
Q ss_pred CCceeeeeeeeeeecCCCeEEEEECCC---CceeecccCCCCceeEeEEcCCCCEEEEEeCC-CcEEEEecCCCCCCCC
Q 019847 244 HHKEILSGHGFSASGDGNKLCLWKYPN---MTKVGELQSSNSRILDLSQSPDGLTVATAGAD-ETIRFWEAFGPSGDED 318 (335)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~v~iw~~~~~~~~~~ 318 (335)
+|+++++.. ..++.|.+|++.. .+.+..+..+...+..++|+|||++|++++.+ +.|.+|+++.......
T Consensus 250 dG~~l~v~~-----~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 250 DGHFLYVSN-----RGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp TSCEEEEEE-----ETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCEEEEEe-----CCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 999885442 4589999999873 34555666666678999999999988888764 8999997765444333
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-26 Score=192.11 Aligned_cols=272 Identities=13% Similarity=0.113 Sum_probs=209.2
Q ss_pred cceeeeecCC--ceEEEec-------CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeC
Q 019847 18 YSKVIDWGRN--NVLAVAL-------GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDA 87 (335)
Q Consensus 18 ~~~~~~~~~~--~~~~~~~-------~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~ 87 (335)
.+..++++++ .+++++. ++.|.+||..+++....+.. ...+..++|+|++++++++. .++.|.+||.
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN---DLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE---SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec---CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 3556778874 4555442 56899999999987766654 23478899999999666554 5799999999
Q ss_pred CCceeEeeeccccc---------ceeEeeecCCCCCEEEEee--CCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCC
Q 019847 88 ETSKLVRNLEGHHR---------RVATSSWNHWNGHILTSGS--KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG 156 (335)
Q Consensus 88 ~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 156 (335)
.+++.+..+..+.. .+..+.|+| +++.+++++ .++.|.+||..+.+. ...+..+...+..++|+|++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKL-KTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEE-EEEECCCCTTCCCCEEETTT
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCce-EEEecCCCCccceEEECCCC
Confidence 99998887765432 278899999 777666665 478899999986554 44454455668889999999
Q ss_pred CEEEEEeCCCeEEEEEccCCCcccceee-ccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCc
Q 019847 157 NLLASGGDDNVVRIWERSKMSSSKSLHR-FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ 235 (335)
Q Consensus 157 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~ 235 (335)
+++++++.++.|.+||+.+......+.. ..++...+..++|+|+++.++++.. .++.|.+||+.+++.+..+....+
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~ 274 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS--KAAEVLVVDTRNGNILAKVAAPES 274 (353)
T ss_dssp TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES--SSSEEEEEETTTCCEEEEEECSSC
T ss_pred CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC--CCCEEEEEECCCCcEEEEEEcCCC
Confidence 9999999999999999876543222221 1124556788999999988887765 679999999999999888876554
Q ss_pred EeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCC
Q 019847 236 ICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADE 303 (335)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 303 (335)
..++|+|+++.++++ ...++.|.+||..+++.+..+.... .+.+++|+|+|++|+++..++
T Consensus 275 -~~~~~s~dg~~l~v~-----~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 275 -LAVLFNPARNEAYVT-----HRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp -CCEEEETTTTEEEEE-----ETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCEEEEEEECC
T ss_pred -ceEEECCCCCEEEEE-----ECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCEEEEEEccc
Confidence 679999999977654 2568999999999999888776544 679999999999887776654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=191.10 Aligned_cols=186 Identities=13% Similarity=0.170 Sum_probs=141.0
Q ss_pred CCCCEEEEEE--CCCcEEEEeC-CCceeEeeecccccceeEeeecC--CCCCEEEEeeCCCcEEEEecccCCeeeEEeec
Q 019847 68 HDAKTLAVGY--MDSKLQLWDA-ETSKLVRNLEGHHRRVATSSWNH--WNGHILTSGSKDKSIINHDVRVSNNVTSCIKA 142 (335)
Q Consensus 68 ~~~~~l~~~~--~dg~i~iw~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 142 (335)
++++++.+++ .|+.|++|++ .+++.+..+..|...+..++|++ .++..|++++.|++|++||+++++. ...+.+
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~-l~tL~g 221 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL-LKKMHI 221 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE-EEEEEC
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE-EEEEcC
Confidence 4555555543 5899999999 45888888888988888888887 3679999999999999999998775 444555
Q ss_pred CC---CCEEEEEeecCCCEE------------EEEeCCCeEEEEEccCCCcccceeec-----cCCCCCeeEEEecCCCC
Q 019847 143 HS---GEVCGLKWSNEGNLL------------ASGGDDNVVRIWERSKMSSSKSLHRF-----TDHCGGVKALAWSPHQV 202 (335)
Q Consensus 143 ~~---~~i~~~~~~~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~ 202 (335)
|. ..+.+++|+|++.++ ++|+.|++|++||..++. .+..+ .+|...+.+..++ +
T Consensus 222 ~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk---~l~v~~~~~p~Gh~~~~lsg~~s--g- 295 (356)
T 2w18_A 222 DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL---SVGVMLYCLPPGQAGRFLEGDVK--D- 295 (356)
T ss_dssp CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE---EEEEEEECCCTTCCCCEEEEEEE--T-
T ss_pred CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE---EEEEEEeeccCCCcceeEccccC--C-
Confidence 43 467788999999876 568889999999987643 23222 3565555444444 3
Q ss_pred cEEEEecCCCCCeEEEEECCCCceEEEeecCC-c-EeEEEeCCCCceeeeeeeeeeecCCCeEEEEEC
Q 019847 203 NVLATGGGREDGCIKIWNVQKGTCIHGIDAKA-Q-ICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268 (335)
Q Consensus 203 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 268 (335)
.++++++ .|++|++||+++++++.+++.+. . +..++|+|+|+++++| +.|++|+|||+
T Consensus 296 ~~lASgS--~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSG------S~D~TIklWd~ 355 (356)
T 2w18_A 296 HCAAAIL--TSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAG------QKDGNIFVYHY 355 (356)
T ss_dssp TEEEEEE--TTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEE------CTTSCEEEEEE
T ss_pred CEEEEEc--CCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEE------ECCCcEEEecC
Confidence 4677776 89999999999999999998553 3 4468999999999988 78999999995
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-26 Score=192.23 Aligned_cols=270 Identities=13% Similarity=0.101 Sum_probs=203.2
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecCCCC-CceEEEEcCCCCEEEEE-ECCCcEEEEeCCCceeEeeeccc-----c
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPGEDD-YPTSVSWSHDAKTLAVG-YMDSKLQLWDAETSKLVRNLEGH-----H 100 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~-----~ 100 (335)
.+++++.++.|.+||..+++....+.... .. .+..++|+|++++++++ ..++.|.+||+.+++.+..+... .
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIAD-AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTT-CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCC-CCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 46777889999999999998766655432 21 47889999999876554 55789999999999888766532 2
Q ss_pred cceeEeeecCCCCCEEEEee------------CCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeE
Q 019847 101 RRVATSSWNHWNGHILTSGS------------KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVV 168 (335)
Q Consensus 101 ~~v~~~~~~~~~~~~l~~~~------------~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (335)
..+..++|+| +++.++++. .++.|.+||+.+.+. ...+.. ...+.+++|+|++++|+++ ++.|
T Consensus 82 ~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i 156 (337)
T 1pby_B 82 KSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQITMLAWARDGSKLYGL--GRDL 156 (337)
T ss_dssp ECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSCCCEEECTTSSCEEEE--SSSE
T ss_pred ccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCcceeEECCCCCEEEEe--CCeE
Confidence 3678899999 888888876 579999999986544 333332 4567889999999988887 6889
Q ss_pred EEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC-----------------------eEEEEECCCCc
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG-----------------------CIKIWNVQKGT 225 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~-----------------------~i~i~d~~~~~ 225 (335)
++||+.+.. ....+..+.. ...+.|+|++..+++++. .++ .|.+||+.+++
T Consensus 157 ~~~d~~~~~---~~~~~~~~~~-~~~~~~s~dg~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 230 (337)
T 1pby_B 157 HVMDPEAGT---LVEDKPIQSW-EAETYAQPDVLAVWNQHE--SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp EEEETTTTE---EEEEECSTTT-TTTTBCCCBCCCCCCCCT--TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred EEEECCCCc---Eeeeeecccc-CCCceeCCCccEEeeecc--CCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence 999987643 2333332220 112378999987766543 333 47899999988
Q ss_pred eEEEee---cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC
Q 019847 226 CIHGID---AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302 (335)
Q Consensus 226 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 302 (335)
.. .+. ....+..++|+|++++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|++++|++++.+
T Consensus 231 ~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--------~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~ 300 (337)
T 1pby_B 231 MA-MREVRIMDVFYFSTAVNPAKTRAFGA--------YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGAL 300 (337)
T ss_dssp EE-EEEEEECSSCEEEEEECTTSSEEEEE--------ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBS
T ss_pred ce-EeecCCCCCceeeEEECCCCCEEEEe--------CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCC
Confidence 75 332 23467889999999998875 699999999999888777644 457899999999999999999
Q ss_pred CcEEEEecCCCCCCCCc
Q 019847 303 ETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 303 g~v~iw~~~~~~~~~~~ 319 (335)
+.|++||+.+.+.....
T Consensus 301 ~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 301 GDLAAYDAETLEKKGQV 317 (337)
T ss_dssp SEEEEEETTTCCEEEEE
T ss_pred CcEEEEECcCCcEEEEE
Confidence 99999999887654433
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-27 Score=212.74 Aligned_cols=282 Identities=12% Similarity=0.104 Sum_probs=207.5
Q ss_pred ccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC-----ce
Q 019847 17 YYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET-----SK 91 (335)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~ 91 (335)
..+.+++|+++..++.+.++.|++||+.+++.... ..+...+.+++|+|||++|+++ .++.|++||+.+ ++
T Consensus 82 ~~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l---~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYL---FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTTTEEEEEETTEEEEEETTTTEEEEE---ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCCCeEEEEECCEEEEEECCCCceEEc---cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 46888999998777777889999999998875443 3456678899999999999996 689999999998 77
Q ss_pred eEeeecccccc--------------eeEeeecCCCCCEEEEee---------------------------------CCCc
Q 019847 92 LVRNLEGHHRR--------------VATSSWNHWNGHILTSGS---------------------------------KDKS 124 (335)
Q Consensus 92 ~~~~~~~~~~~--------------v~~~~~~~~~~~~l~~~~---------------------------------~dg~ 124 (335)
.......+... +.++.|+| +++.|++++ .+..
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 66555444333 48999999 999999887 4468
Q ss_pred EEEEecccCCeeeEEe-ecCCCCEEEEEeecCCCEEEEEeCCC-----eEEEEEccCCCcccceeeccCCC---CCeeEE
Q 019847 125 IINHDVRVSNNVTSCI-KAHSGEVCGLKWSNEGNLLASGGDDN-----VVRIWERSKMSSSKSLHRFTDHC---GGVKAL 195 (335)
Q Consensus 125 i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~---~~v~~~ 195 (335)
|++||+.++....... ..|...+.+++|+||+++|++++.++ .|++||+.++.....+... .+. ..+..+
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~ 315 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE-TDKHYVEPLHPL 315 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE-ECSSCCCCCSCC
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc-cCCCeECccCCc
Confidence 9999998655322111 24667899999999999999988776 8999998875222222211 122 234678
Q ss_pred EecC--CCCcEEEEecCCCCCeEEEEECC-CCceEEEeecC-CcEeE-EEeCCCCceeeeeeeeeeecCCC----eEEEE
Q 019847 196 AWSP--HQVNVLATGGGREDGCIKIWNVQ-KGTCIHGIDAK-AQICG-LEWNRHHKEILSGHGFSASGDGN----KLCLW 266 (335)
Q Consensus 196 ~~~~--~~~~~~~~~~g~~d~~i~i~d~~-~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~i~i~ 266 (335)
.|+| +++ +++++. .|+.+++|++. ++..+..+..+ ..+.. ++|+|+++.++... ..++ .|..|
T Consensus 316 ~~sp~~dg~-~l~~~~--~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~-----~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 316 TFLPGSNNQ-FIWQSR--RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFES-----TEASPLERHFYCI 387 (706)
T ss_dssp EECTTCSSE-EEEEEC--TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEE-----SSSCTTCBEEEEE
T ss_pred eeecCCCCE-EEEEEc--cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEe-----cCCCCceEEEEEE
Confidence 9999 986 555554 78888898876 56666666543 45665 79999999886542 3343 77778
Q ss_pred ECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC----CcEEEEecCCCC
Q 019847 267 KYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD----ETIRFWEAFGPS 314 (335)
Q Consensus 267 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~v~iw~~~~~~ 314 (335)
|..+++. ..+. |...+.+++|+|||++|+....+ +.|++||+.+++
T Consensus 388 d~~~~~~-~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 388 DIKGGKT-KDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ETTCCCC-EESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EcCCCCc-eecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 8877653 3333 56678999999999988876543 569999998765
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=210.87 Aligned_cols=293 Identities=12% Similarity=0.118 Sum_probs=200.7
Q ss_pred ceeeeecCCceEEEecCCeEEEEEecCCce--eeEEeecC--------------CCCCceEEEEcCCCCEEEEEECCCcE
Q 019847 19 SKVIDWGRNNVLAVALGPVLFLWKWENGKV--KKLLQVPG--------------EDDYPTSVSWSHDAKTLAVGYMDSKL 82 (335)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~--~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (335)
+..+.|.++.++..+.++ | +||+.+++. ........ +...|.+++|+|+ ++++.+. ++.|
T Consensus 28 ~~~~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i 103 (706)
T 2z3z_A 28 VVGLQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGL 103 (706)
T ss_dssp CTTCEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEE
T ss_pred CCCCcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEE
Confidence 344777766677777776 8 999999986 44333211 1156999999999 6666664 6999
Q ss_pred EEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEeccc-----CCeeeEEeecCCCC-----------
Q 019847 83 QLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV-----SNNVTSCIKAHSGE----------- 146 (335)
Q Consensus 83 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----~~~~~~~~~~~~~~----------- 146 (335)
++||+.+++.... ..+...+.+++|+| +++.|+++ .++.|++||+.+ ++. ......+...
T Consensus 104 ~~~d~~~~~~~~l-~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~-~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 104 VGFDMLARKVTYL-FDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRA-IAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp EEEETTTTEEEEE-ECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCC-EESCSCCBTTEEESSCCGGGC
T ss_pred EEEECCCCceEEc-cCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCc-EEeccCCCCCeEcccchhhhh
Confidence 9999998876544 44667899999999 99988885 689999999986 443 3333333332
Q ss_pred ---EEEEEeecCCCEEEEEe---------------------------------CCCeEEEEEccCCCcccceeeccCCCC
Q 019847 147 ---VCGLKWSNEGNLLASGG---------------------------------DDNVVRIWERSKMSSSKSLHRFTDHCG 190 (335)
Q Consensus 147 ---i~~~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~ 190 (335)
+.+++|+|||++|++++ .+..|++||+.++.. ..+.....+..
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~ 258 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT-VYLQTGEPKEK 258 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE-EECCCCSCTTC
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce-EeeccCCCCce
Confidence 47899999999999987 446799999876432 11222224667
Q ss_pred CeeEEEecCCCCcEEEEecCCCCC-----eEEEEECCCCceEEEee-c--CC---cEeEEEeCC--CCceeeeeeeeeee
Q 019847 191 GVKALAWSPHQVNVLATGGGREDG-----CIKIWNVQKGTCIHGID-A--KA---QICGLEWNR--HHKEILSGHGFSAS 257 (335)
Q Consensus 191 ~v~~~~~~~~~~~~~~~~~g~~d~-----~i~i~d~~~~~~~~~~~-~--~~---~~~~~~~~~--~~~~~~~~~~~~~~ 257 (335)
.+..++|+|+++.++++. .++ .|++||+.+++....+. . .. .+..+.|+| +|++++++
T Consensus 259 ~~~~~~~spdg~~l~~~~---~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~------ 329 (706)
T 2z3z_A 259 FLTNLSWSPDENILYVAE---VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQS------ 329 (706)
T ss_dssp EEEEEEECTTSSEEEEEE---ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEE------
T ss_pred eEeeEEEECCCCEEEEEE---eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEE------
Confidence 799999999998777655 343 89999999984333332 1 11 246789999 99977765
Q ss_pred cCCCeEEEEECC-CCceeecccCCCCceeE-eEEcCCCCEEEEEeC-CC----cEEEEecCCCCCCCCccccccccccce
Q 019847 258 GDGNKLCLWKYP-NMTKVGELQSSNSRILD-LSQSPDGLTVATAGA-DE----TIRFWEAFGPSGDEDSVSHLAGLVSLK 330 (335)
Q Consensus 258 ~~~~~i~i~d~~-~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~-dg----~v~iw~~~~~~~~~~~~~~~~~i~~~~ 330 (335)
..++.+++|++. ++..+..+..+...+.. ++|+|+++.|+.++. ++ .|..|++.++. .....+...+.++.
T Consensus 330 ~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~ 407 (706)
T 2z3z_A 330 RRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK--TKDLTPESGMHRTQ 407 (706)
T ss_dssp CTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC--CEESCCSSSEEEEE
T ss_pred ccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC--ceeccCCCceEEEE
Confidence 567888888876 66777778788777877 799999988766554 44 45555655543 22333444455444
Q ss_pred e
Q 019847 331 T 331 (335)
Q Consensus 331 ~ 331 (335)
+
T Consensus 408 ~ 408 (706)
T 2z3z_A 408 L 408 (706)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-25 Score=183.67 Aligned_cols=269 Identities=13% Similarity=0.143 Sum_probs=186.8
Q ss_pred cCCeEEEEEec--CCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC----CcEEEEeCCC--cee--Eeeecccccce
Q 019847 34 LGPVLFLWKWE--NGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD----SKLQLWDAET--SKL--VRNLEGHHRRV 103 (335)
Q Consensus 34 ~~~~i~vw~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iw~~~~--~~~--~~~~~~~~~~v 103 (335)
.++.|++|+++ +++....... +...+..++|+|+|++|++++.+ +.|.+|++.. ++. +.....+....
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p 102 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADP 102 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCE
T ss_pred CCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCc
Confidence 35689999874 5666555444 66778899999999999999875 7999998865 433 33333345566
Q ss_pred eEeeecCCCCCEEEEee-CCCcEEEEecccCCeeeEE---ee----------cCCCCEEEEEeecCCCEEEEEe-CCCeE
Q 019847 104 ATSSWNHWNGHILTSGS-KDKSIINHDVRVSNNVTSC---IK----------AHSGEVCGLKWSNEGNLLASGG-DDNVV 168 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~---~~----------~~~~~i~~~~~~~~~~~l~~~~-~dg~i 168 (335)
..+++ +++.|++++ .++.+.+|++.....+... .. .+...+.+++|+|+++++++++ .++.|
T Consensus 103 ~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v 179 (361)
T 3scy_A 103 CYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQI 179 (361)
T ss_dssp EEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred EEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEE
Confidence 77777 555555554 6889999999754432111 11 1123468899999999776655 47899
Q ss_pred EEEEccCCCc------ccc----eeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce--EEEeec----
Q 019847 169 RIWERSKMSS------SKS----LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC--IHGIDA---- 232 (335)
Q Consensus 169 ~iwd~~~~~~------~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~--~~~~~~---- 232 (335)
++|++..... ... ......+...+..++|+|+++.++++.. .++.|.+||+.+++. +..+..
T Consensus 180 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~~~~~g~~~~~~~~~~~~~~ 257 (361)
T 3scy_A 180 HKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE--IGGTVIAFRYADGMLDEIQTVAADTVN 257 (361)
T ss_dssp EEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTCEEEEEEEETTEEEEEEEEESCSSC
T ss_pred EEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC--CCCeEEEEEecCCceEEeEEEecCCCC
Confidence 9999875432 111 1112234456789999999988877765 689999999987754 222322
Q ss_pred CCcEeEEEeCCCCceeeeeeeeeeecC-CCeEEEEECC--CCc--eeecccCCCCceeEeEEcCCCCEEEEEe-CCCcEE
Q 019847 233 KAQICGLEWNRHHKEILSGHGFSASGD-GNKLCLWKYP--NMT--KVGELQSSNSRILDLSQSPDGLTVATAG-ADETIR 306 (335)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~--~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~ 306 (335)
......++|+|+|++++++. .. ++.|.+|++. +++ .+..+.. ...+.+++|+|||++|++++ .++.|.
T Consensus 258 ~~~~~~i~~spdg~~l~v~~-----~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~ 331 (361)
T 3scy_A 258 AQGSGDIHLSPDGKYLYASN-----RLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQ 331 (361)
T ss_dssp CCCEEEEEECTTSSEEEEEE-----CSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEE
T ss_pred CCCcccEEECCCCCEEEEEC-----CCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEE
Confidence 13467999999999886652 34 6899999985 344 3444444 45678999999999988887 678999
Q ss_pred EEecCCCCC
Q 019847 307 FWEAFGPSG 315 (335)
Q Consensus 307 iw~~~~~~~ 315 (335)
+|+++....
T Consensus 332 v~~~d~~~g 340 (361)
T 3scy_A 332 IFERDQATG 340 (361)
T ss_dssp EEEECTTTC
T ss_pred EEEEECCCC
Confidence 987764433
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-25 Score=183.26 Aligned_cols=266 Identities=9% Similarity=0.088 Sum_probs=186.5
Q ss_pred ccceeeeecCC--ceEEEecC-CeEEEEEec--CCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC-CCcEEEEeCC--
Q 019847 17 YYSKVIDWGRN--NVLAVALG-PVLFLWKWE--NGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM-DSKLQLWDAE-- 88 (335)
Q Consensus 17 ~~~~~~~~~~~--~~~~~~~~-~~i~vw~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~-- 88 (335)
..+.+++|+++ .+++++.+ +.|.+|+++ +++......+..+. .+..++|+|++++|++++. ++.|.+||+.
T Consensus 38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~ 116 (343)
T 1ri6_A 38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG 116 (343)
T ss_dssp SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCC
Confidence 45667888874 36666655 899999998 66665555554444 7899999999998877765 8889999994
Q ss_pred -CceeEeeecccccceeEeeecCCCCCEEEEee-CCCcEEEEecccCCeeeE----Eee-cCCCCEEEEEeecCCCEEEE
Q 019847 89 -TSKLVRNLEGHHRRVATSSWNHWNGHILTSGS-KDKSIINHDVRVSNNVTS----CIK-AHSGEVCGLKWSNEGNLLAS 161 (335)
Q Consensus 89 -~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~----~~~-~~~~~i~~~~~~~~~~~l~~ 161 (335)
+.+....+.. ...+.+++|+| +++.+++++ .++.|.+||+.+...... ... .....+..++|+|+++++++
T Consensus 117 ~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~ 194 (343)
T 1ri6_A 117 LPVGVVDVVEG-LDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYC 194 (343)
T ss_dssp EEEEEEEEECC-CTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred ccccccccccC-CCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEE
Confidence 4445555543 34688999999 888777776 899999999986333221 122 23457889999999997765
Q ss_pred Ee-CCCeEEEEEccCCC-cccceeec---cCC---CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC--C--CceEEE
Q 019847 162 GG-DDNVVRIWERSKMS-SSKSLHRF---TDH---CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ--K--GTCIHG 229 (335)
Q Consensus 162 ~~-~dg~i~iwd~~~~~-~~~~~~~~---~~~---~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~--~--~~~~~~ 229 (335)
++ .++.|.+||++... ........ ... ...+..++|+|+++.++++.. .++.|.+||+. + .+.+..
T Consensus 195 ~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~--~~~~i~v~d~~~~~~~~~~~~~ 272 (343)
T 1ri6_A 195 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR--TASLITVFSVSEDGSVLSKEGF 272 (343)
T ss_dssp EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCCEEEEEE
T ss_pred EeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec--CCCEEEEEEEcCCCCceEEeee
Confidence 55 78999999986421 11112221 111 235668999999988887775 78999999998 2 345555
Q ss_pred eecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEEC--CCCc--eeecccCCCCceeEeEEcCCC
Q 019847 230 IDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY--PNMT--KVGELQSSNSRILDLSQSPDG 293 (335)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~--~~~~--~~~~~~~~~~~i~~~~~~~~~ 293 (335)
+.....+..++|+|++++++++. ..++.+.+|++ .+++ .+..+... ....+++|.|+.
T Consensus 273 ~~~~~~~~~~~~s~dg~~l~~~~-----~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~ 334 (343)
T 1ri6_A 273 QPTETQPRGFNVDHSGKYLIAAG-----QKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHE 334 (343)
T ss_dssp EECSSSCCCEEECTTSSEEEEEC-----TTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC
T ss_pred ecCCCccceEEECCCCCEEEEec-----CCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEccc
Confidence 66556688999999999887662 46899999954 4553 33344332 345667777654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-25 Score=204.04 Aligned_cols=243 Identities=9% Similarity=0.045 Sum_probs=187.4
Q ss_pred CCCceEEEEcCCCCEEEEEEC-CC-----cEEEEeCCCceeEeeeccccc------------------------ceeEee
Q 019847 58 DDYPTSVSWSHDAKTLAVGYM-DS-----KLQLWDAETSKLVRNLEGHHR------------------------RVATSS 107 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~-dg-----~i~iw~~~~~~~~~~~~~~~~------------------------~v~~~~ 107 (335)
...+.+++|+|||++|++++. |+ .|++||+.+++....+..+.. .+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456899999999999999998 88 899999999987766654432 388999
Q ss_pred ecCCCCCEEEEeeCCCcEEEEecccCC--eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeec
Q 019847 108 WNHWNGHILTSGSKDKSIINHDVRVSN--NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF 185 (335)
Q Consensus 108 ~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 185 (335)
|+| +++.|++++. +.|++||+.++. . ...+..+...+..++|+|||++|++++ ++.|++||+..+. .....
T Consensus 116 ~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~-~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~---~~~~~ 188 (741)
T 2ecf_A 116 WSP-DAQRLLFPLG-GELYLYDLKQEGKAA-VRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR---QMQLT 188 (741)
T ss_dssp ECT-TSSEEEEEET-TEEEEEESSSCSTTS-CCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE---EEECC
T ss_pred ECC-CCCEEEEEeC-CcEEEEECCCCCcce-EEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC---EEEec
Confidence 999 9999998886 999999998662 2 334556778899999999999999988 5699999987643 22222
Q ss_pred cCCCCC----------------eeEEEecCCCCcEEEEecCCCCC---------------------------------eE
Q 019847 186 TDHCGG----------------VKALAWSPHQVNVLATGGGREDG---------------------------------CI 216 (335)
Q Consensus 186 ~~~~~~----------------v~~~~~~~~~~~~~~~~~g~~d~---------------------------------~i 216 (335)
..+... +..+.|+|||+.++++.. |+ .|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~---d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI---DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE---ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEE---cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 222221 478999999988877653 33 78
Q ss_pred EEEECCC-CceEEEee---cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCC----ceeEeE
Q 019847 217 KIWNVQK-GTCIHGID---AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNS----RILDLS 288 (335)
Q Consensus 217 ~i~d~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~i~~~~ 288 (335)
++||+.+ ++...... +...+..++| |+|+.++.... .....+..|++||+.+++....+..+.. .+..++
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~-~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 343 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQ-SRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR 343 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEE-ETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEe-cccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence 9999988 77654432 3457889999 99999986531 1123467899999999987766655543 456899
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCC
Q 019847 289 QSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 289 ~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
|+|||+++++++.||.+++|.+..
T Consensus 344 ~spdg~~~~~~~~~g~~~l~~~~~ 367 (741)
T 2ecf_A 344 FLDDGSILWSSERTGFQHLYRIDS 367 (741)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECS
T ss_pred ECCCCeEEEEecCCCccEEEEEcC
Confidence 999999999999999888888763
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-24 Score=177.03 Aligned_cols=276 Identities=10% Similarity=0.053 Sum_probs=190.6
Q ss_pred eEEEec--CCeEEEEEec--CCceeeEEeec-CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC-CceeEeeeccc-cc
Q 019847 29 VLAVAL--GPVLFLWKWE--NGKVKKLLQVP-GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE-TSKLVRNLEGH-HR 101 (335)
Q Consensus 29 ~~~~~~--~~~i~vw~~~--~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~-~~ 101 (335)
+++++. ++.|.+|+++ ++++....... .....+..++|+|+|++|++++.+ .|.+|++. +++........ .+
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g 83 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG 83 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC
Confidence 455553 2578888764 56654433322 234568899999999999999887 99999997 77765433211 13
Q ss_pred ceeEeeecCCCCCE--EEEee-------------CCCcEEEEecccCCeeeEEee----cCCCCEEEEEeecCCCEEEEE
Q 019847 102 RVATSSWNHWNGHI--LTSGS-------------KDKSIINHDVRVSNNVTSCIK----AHSGEVCGLKWSNEGNLLASG 162 (335)
Q Consensus 102 ~v~~~~~~~~~~~~--l~~~~-------------~dg~i~~~d~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~ 162 (335)
.+..++|+| +++. ++++. .+|.+.+|++.....+...+. .+...+.+++|+|+|++++++
T Consensus 84 ~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 84 HPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCccEEECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 466799999 8884 55553 689999999974333332222 255679999999999988877
Q ss_pred eC-CCeEEEEEcc-CCCcccceeecc--CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC--CCceE---EEee--
Q 019847 163 GD-DNVVRIWERS-KMSSSKSLHRFT--DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ--KGTCI---HGID-- 231 (335)
Q Consensus 163 ~~-dg~i~iwd~~-~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~--~~~~~---~~~~-- 231 (335)
+. ++.|++||+. ++.. ..+..+. .+...+..++|+|+++.++++.. .++.|.+|++. +++.. ..+.
T Consensus 163 ~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--~~~~v~v~~~~~~~g~~~~~~~~~~~~ 239 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEV-ELVGSVDAPDPGDHPRWVAMHPTGNYLYALME--AGNRICEYVIDPATHMPVYTHHSFPLI 239 (365)
T ss_dssp ETTTTEEEEEEECTTSCE-EEEEEEECSSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred cCCCCEEEEEEECCCCCE-EEeeeEecCCCCCCCCEeEECCCCCEEEEEEC--CCCeEEEEEEeCCCCcEEEccceEEcC
Confidence 64 6799999987 4321 2222232 23566899999999988777764 57899999765 56543 1222
Q ss_pred -cC----C-------cEeEEE-eCCCCceeeeeeeeeeecCC----CeEEEEECC-CCceee---cccCCCCceeEeEEc
Q 019847 232 -AK----A-------QICGLE-WNRHHKEILSGHGFSASGDG----NKLCLWKYP-NMTKVG---ELQSSNSRILDLSQS 290 (335)
Q Consensus 232 -~~----~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~-~~~~~~---~~~~~~~~i~~~~~~ 290 (335)
.. . .+..++ |+|+|++++++.. +.+ +.|.+|++. +++... ....+...+..++|+
T Consensus 240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~----~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~s 315 (365)
T 1jof_A 240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR----ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVS 315 (365)
T ss_dssp CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE----ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEE
T ss_pred CCCcCCcccccccccccccEEEECCCCCEEEEECC----CCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceec
Confidence 11 2 478899 9999998876532 222 289999986 555433 233345557789999
Q ss_pred C---CCCEEEEEeCC-CcEEEEecCCC
Q 019847 291 P---DGLTVATAGAD-ETIRFWEAFGP 313 (335)
Q Consensus 291 ~---~~~~l~~~~~d-g~v~iw~~~~~ 313 (335)
| ||++|++++.+ +.|.+|+++..
T Consensus 316 p~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 316 PCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 9 89999999865 89999999865
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-25 Score=181.16 Aligned_cols=243 Identities=14% Similarity=0.146 Sum_probs=179.8
Q ss_pred EECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEeccc-CCeeeEEeecC-CCCEEEEEee
Q 019847 76 GYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV-SNNVTSCIKAH-SGEVCGLKWS 153 (335)
Q Consensus 76 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~-~~~i~~~~~~ 153 (335)
++.++.|++||+.+++... +..|...+.+++|+| ++++|++++ ++.|++||+.+ +.. ......+ ...+.+++|+
T Consensus 18 ~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSP-EKVDTGFATICNNDHGIS 93 (297)
T ss_dssp CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSC-EECCCTTCCCBCSCCEEC
T ss_pred CCcceeEEEEeCCCCceee-eccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCc-eEeccccccccccceEEC
Confidence 3568899999999888664 455889999999999 999998876 78999999987 543 4444444 4678899999
Q ss_pred cCCCEEEEEe--CCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEEC--CCCceEEE
Q 019847 154 NEGNLLASGG--DDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV--QKGTCIHG 229 (335)
Q Consensus 154 ~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~--~~~~~~~~ 229 (335)
|++++|++++ .++...+|.++.... ....+..+ ..+..++|+|+++.+++++. .++.+++|++ .+++....
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~-~~~~~~~~spdg~~l~~~~~--~~~~~~l~~~~~~~~~~~~~ 168 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGG--TPRLMTKN-LPSYWHGWSPDGKSFTYCGI--RDQVFDIYSMDIDSGVETRL 168 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCC--CCEECCSS-SSEEEEEECTTSSEEEEEEE--ETTEEEEEEEETTTCCEEEC
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCC--ceEEeecC-CCccceEECCCCCEEEEEEC--CCCceEEEEEECCCCcceEc
Confidence 9999999998 334556665542211 12333323 34889999999988886665 7898899885 44555444
Q ss_pred eecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC-CCceeecccCCCCceeEeEEcCCCCEEEEEeCC------
Q 019847 230 IDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP-NMTKVGELQSSNSRILDLSQSPDGLTVATAGAD------ 302 (335)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------ 302 (335)
......+.++.|+|+++.++.+. ..++.+++|++. .+..+..+..|...+..++|+|++++|++++.+
T Consensus 169 ~~~~~~~~~~~~s~dg~~l~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 243 (297)
T 2ojh_A 169 THGEGRNDGPDYSPDGRWIYFNS-----SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDH 243 (297)
T ss_dssp CCSSSCEEEEEECTTSSEEEEEE-----CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred ccCCCccccceECCCCCEEEEEe-----cCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcc
Confidence 44566899999999999887652 457889999886 556667777888889999999999999988876
Q ss_pred -----CcEEEEecCCCCCCCCc--cccccccccceec
Q 019847 303 -----ETIRFWEAFGPSGDEDS--VSHLAGLVSLKTS 332 (335)
Q Consensus 303 -----g~v~iw~~~~~~~~~~~--~~~~~~i~~~~~~ 332 (335)
+.|++||+.+++..... ..|...+..+.++
T Consensus 244 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 280 (297)
T 2ojh_A 244 PRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWS 280 (297)
T ss_dssp CSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBC
T ss_pred cccCceEEEEEecCCCCceeeeccCCCCcccccceEC
Confidence 56999999876543222 2455566665554
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-24 Score=204.59 Aligned_cols=298 Identities=10% Similarity=0.067 Sum_probs=213.2
Q ss_pred cccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC------CcEEEEeCCC
Q 019847 16 DYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD------SKLQLWDAET 89 (335)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~~~ 89 (335)
...+...+|+++.++. ..++.|++|++.+++.. .+..|...+.+++|||||++||+++.+ ..|++|++.+
T Consensus 14 ~~~~~~~~~S~~~iaf-~~~~~l~~~~~~gg~~~---~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~ 89 (1045)
T 1k32_A 14 PNLLLNPDIHGDRIIF-VCCDDLWEHDLKSGSTR---KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN 89 (1045)
T ss_dssp CCCCEEEEEETTEEEE-EETTEEEEEETTTCCEE---EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred cceEeCcEEeCCEEEE-EECCcEEEEECCCCcEE---EeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCC
Confidence 3456778888765554 44579999999988753 345788999999999999999988643 3799999988
Q ss_pred ceeEeeecccccce-------eEeeecCCCCCEEEEeeCC------CcEEEEecccCCee--------------------
Q 019847 90 SKLVRNLEGHHRRV-------ATSSWNHWNGHILTSGSKD------KSIINHDVRVSNNV-------------------- 136 (335)
Q Consensus 90 ~~~~~~~~~~~~~v-------~~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~-------------------- 136 (335)
++ ...+..|...+ ..++|+| +++++++++.+ ..|..|++..+...
T Consensus 90 g~-~~~lt~~~~~~~~~~~~~~~~~~Sp-Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~ 167 (1045)
T 1k32_A 90 GE-IKRITYFSGKSTGRRMFTDVAGFDP-DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIG 167 (1045)
T ss_dssp TE-EEECCCCCEEEETTEECSEEEEECT-TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEE
T ss_pred CC-eEEcccCCCcccccccccccccCCC-CCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEe
Confidence 77 56677788888 9999999 88877877754 35777776543211
Q ss_pred ----------------------------eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCC-cccc------
Q 019847 137 ----------------------------TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMS-SSKS------ 181 (335)
Q Consensus 137 ----------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~------ 181 (335)
...+.+|...+.++.|+++ .++++++.|+.+.+|.+.... ....
T Consensus 168 ~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~ 246 (1045)
T 1k32_A 168 RNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD 246 (1045)
T ss_dssp ESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCS
T ss_pred ccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCC
Confidence 0122456677778888877 666677777888888754211 1000
Q ss_pred ------------------------------eeeccC-----------CCCCeeEEEec-CCCCcEEEEecCCCCCeEEEE
Q 019847 182 ------------------------------LHRFTD-----------HCGGVKALAWS-PHQVNVLATGGGREDGCIKIW 219 (335)
Q Consensus 182 ------------------------------~~~~~~-----------~~~~v~~~~~~-~~~~~~~~~~~g~~d~~i~i~ 219 (335)
+..+.. |...+.+++|+ |+|+.+++.. ++.+.+|
T Consensus 247 ~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~----~~~i~~~ 322 (1045)
T 1k32_A 247 YYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS----RGQAFIQ 322 (1045)
T ss_dssp SCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE----TTEEEEE
T ss_pred cceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE----cCEEEEE
Confidence 001111 12257788899 8887666543 6889999
Q ss_pred ECCCCceEEEeecCC-cEeEEEeCCCCceeeeeeeeeeecCCCeEE-EEECCCCceeecccCCCCceeEeEEcCCCCEEE
Q 019847 220 NVQKGTCIHGIDAKA-QICGLEWNRHHKEILSGHGFSASGDGNKLC-LWKYPNMTKVGELQSSNSRILDLSQSPDGLTVA 297 (335)
Q Consensus 220 d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 297 (335)
++..++......+.. .+..+.|+ +|+.++.+ +.++.+. +||+.+++.... ..|...+..++|+|||++|+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~------s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~~la 394 (1045)
T 1k32_A 323 DVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHG------TREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAV 394 (1045)
T ss_dssp CTTSSBEEECSCCSCEEEEEECSS-SEEEEEEE------ETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEE
T ss_pred cCCCCceEEccCCCcceEEeeeEc-CCCeEEEE------ECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCCEEE
Confidence 988777554333445 78899999 99888866 4477888 999987765543 47778899999999999999
Q ss_pred EEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 298 TAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 298 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
+++.++.|++||+.+++.......|...+.++.++
T Consensus 395 ~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S 429 (1045)
T 1k32_A 395 VANDRFEIMTVDLETGKPTVIERSREAMITDFTIS 429 (1045)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred EECCCCeEEEEECCCCceEEeccCCCCCccceEEC
Confidence 99999999999998876544333565566655553
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.2e-25 Score=186.08 Aligned_cols=216 Identities=19% Similarity=0.188 Sum_probs=153.2
Q ss_pred cccccCCCCcccccceeeeecCC-ceEEEecCCeEEEEEecCCce--------eeEE-----eecCCCCCceEEEEcCCC
Q 019847 5 ARILDAPYLMEDYYSKVIDWGRN-NVLAVALGPVLFLWKWENGKV--------KKLL-----QVPGEDDYPTSVSWSHDA 70 (335)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~--------~~~~-----~~~~~~~~v~~~~~~~~~ 70 (335)
.++++.+.......++.+++++. .+++++....+++|+...... .... ..-.+...|.+++|+|++
T Consensus 25 vri~~~~~~~~~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg 104 (434)
T 2oit_A 25 VRIFDSPEELPKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN 104 (434)
T ss_dssp EECSCCCSSCCCSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS
T ss_pred EEecCCccccCCCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC
Confidence 44454443333445778888873 444444444499988642100 0000 011356779999999999
Q ss_pred CEEE----EEECCCcEEEEeCCCc--------e---eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe
Q 019847 71 KTLA----VGYMDSKLQLWDAETS--------K---LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN 135 (335)
Q Consensus 71 ~~l~----~~~~dg~i~iw~~~~~--------~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 135 (335)
++|+ +|+.|+.|++||+.++ + ....+.+|...|.+++|+|.++++|++++.||+|++||+++...
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 9999 6788999999998765 1 24556679999999999995589999999999999999987644
Q ss_pred eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeecc----CCCCCeeEEEecCCCCcEEEEecCC
Q 019847 136 VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFT----DHCGGVKALAWSPHQVNVLATGGGR 211 (335)
Q Consensus 136 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~g~ 211 (335)
.....+|...|.+++|+|+|++|++|+.||.|++||++ ......+.... .|...+.+++|++++..+++...
T Consensus 185 -~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~-- 260 (434)
T 2oit_A 185 -VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAA-- 260 (434)
T ss_dssp -EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEE--
T ss_pred -eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEcc--
Confidence 34455688999999999999999999999999999987 22211111111 12347999999998865555544
Q ss_pred CCC------eEEEEECCCC
Q 019847 212 EDG------CIKIWNVQKG 224 (335)
Q Consensus 212 ~d~------~i~i~d~~~~ 224 (335)
.+| .+++|++++.
T Consensus 261 ~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 261 ADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTCCSSSCCEEEEEECCCT
T ss_pred CCCccCCCCceEEEEeccC
Confidence 333 4999999865
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-24 Score=178.35 Aligned_cols=243 Identities=8% Similarity=0.077 Sum_probs=189.0
Q ss_pred CCCceEEEEcCCCCEEEEEEC-------CCcEEEEeCCCceeEeeecccccceeEeeecCCCCC-EEEEeeCCCcEEEEe
Q 019847 58 DDYPTSVSWSHDAKTLAVGYM-------DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGH-ILTSGSKDKSIINHD 129 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d 129 (335)
...+..++|+|+++++++++. ++.|.+||..+++.+..+.. ...+..++|+| +++ ++++...++.|.+||
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINN-TTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEET-TTTEEEEEETTTTEEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECC-CCCEEEEEecCCCEEEEEe
Confidence 345789999999999988874 56899999999998888764 45588999999 777 555566689999999
Q ss_pred cccCCeeeEEeecCCC---------CEEEEEeecCCCEEEEEe--CCCeEEEEEccCCCcccceeeccCCCCCeeEEEec
Q 019847 130 VRVSNNVTSCIKAHSG---------EVCGLKWSNEGNLLASGG--DDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWS 198 (335)
Q Consensus 130 ~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 198 (335)
..+++... .+..+.. .+.+++|+|+++++++++ .++.|.+||+++. +....+..+...+..++|+
T Consensus 118 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 118 AKTGEVKG-RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI---KLKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp TTTCCEEE-EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT---EEEEEECCCCTTCCCCEEE
T ss_pred CCCCeeEE-EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC---ceEEEecCCCCccceEEEC
Confidence 98766533 3333322 278899999999887776 4789999998764 3445554455568889999
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-----CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 199 PHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-----KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 199 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
|+++.++++. .++.|.+||+.+++.+..+.. ...+..++|+|+++.++++. ..++.|.+||..+++.
T Consensus 194 ~dg~~l~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-----~~~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 194 SEGKRLYTTN---ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITD-----SKAAEVLVVDTRNGNI 265 (353)
T ss_dssp TTTTEEEEEC---TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEE-----SSSSEEEEEETTTCCE
T ss_pred CCCCEEEEEc---CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEe-----CCCCEEEEEECCCCcE
Confidence 9998777765 589999999999998887764 23477899999999876652 4579999999999998
Q ss_pred eecccCCCCceeEeEEcCCCCEEEEEe-CCCcEEEEecCCCCCC
Q 019847 274 VGELQSSNSRILDLSQSPDGLTVATAG-ADETIRFWEAFGPSGD 316 (335)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~ 316 (335)
+..+.... ...++|+|+++++++++ .++.|.+||..+.+..
T Consensus 266 ~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~ 307 (353)
T 3vgz_A 266 LAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV 307 (353)
T ss_dssp EEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence 87776544 26799999999666555 6899999999876543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-24 Score=176.86 Aligned_cols=237 Identities=8% Similarity=0.089 Sum_probs=178.0
Q ss_pred EEcCCCCE-EEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEee-CCCcEEEEecccCCeeeEEeec
Q 019847 65 SWSHDAKT-LAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS-KDKSIINHDVRVSNNVTSCIKA 142 (335)
Q Consensus 65 ~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~ 142 (335)
.|.+++++ +++.+.++.|.+||+.+++....+..+...+ .++|+| +++.+++++ .++.|.+||+.++......+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITS-DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECS-SSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcC-CCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 45666555 5667788999999999999988887666677 999999 777555555 4899999999877653555555
Q ss_pred CCCCEEEEEeecCCCEEEEEeCCC---eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe-EEE
Q 019847 143 HSGEVCGLKWSNEGNLLASGGDDN---VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC-IKI 218 (335)
Q Consensus 143 ~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~-i~i 218 (335)
+..+..+++|+|++++++++..++ .|.+||+.... .+..+. ......+++|+|++++++++.. .++. +.+
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~---~~~~~~-~~~~~~~~~~spdg~~l~~~~~--~~~~~i~~ 155 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK---FISTIP-IPYDAVGIAISPNGNGLILIDR--SSANTVRR 155 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE---EEEEEE-CCTTEEEEEECTTSSCEEEEEE--TTTTEEEE
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCC---eEEEEE-CCCCccceEECCCCCEEEEEec--CCCceEEE
Confidence 666665599999999999655553 89999987643 344443 3345689999999988888765 5677 999
Q ss_pred EECCCCceE-----EEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce---eecccCCCCceeEeEEc
Q 019847 219 WNVQKGTCI-----HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK---VGELQSSNSRILDLSQS 290 (335)
Q Consensus 219 ~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~ 290 (335)
|++.....+ ..+........++|+|+|+++++.. ..++.|.+||+.+++. +..+..+ ..+..++|+
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~-----~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~s 229 (331)
T 3u4y_A 156 FKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVAN-----LIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVS 229 (331)
T ss_dssp EEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEE-----TTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEEC
T ss_pred EEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEe-----CCCCeEEEEECCCCcccceeeeccCC-CCCceEEEC
Confidence 998764432 2333455689999999999775542 5689999999999888 7666644 557899999
Q ss_pred CCCCEEEEEe-CCCcEEEEecCCCCC
Q 019847 291 PDGLTVATAG-ADETIRFWEAFGPSG 315 (335)
Q Consensus 291 ~~~~~l~~~~-~dg~v~iw~~~~~~~ 315 (335)
|||++|++++ .++.|.+||+.+++.
T Consensus 230 pdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 230 RDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp TTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred CCCCEEEEEEcCCCEEEEEECCCCce
Confidence 9999776654 578899999987654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-25 Score=183.19 Aligned_cols=238 Identities=9% Similarity=0.048 Sum_probs=180.2
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccc-cceeEeeecCCCCCEE-EEeeCCCcEEEEecccCCeeeEEe
Q 019847 63 SVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH-RRVATSSWNHWNGHIL-TSGSKDKSIINHDVRVSNNVTSCI 140 (335)
Q Consensus 63 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~ 140 (335)
.+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+| +++.+ +++..++.|.+||+.+++......
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 45678889999999999999999999999888876443 2678999999 77754 556678999999998665433322
Q ss_pred ecC-----CCCEEEEEeecCCCEEEEEeCC------------CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCc
Q 019847 141 KAH-----SGEVCGLKWSNEGNLLASGGDD------------NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203 (335)
Q Consensus 141 ~~~-----~~~i~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 203 (335)
..+ ...+..++|+|+++++++++.+ +.|.+||+.+....+.+.... +...+.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS- 160 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-
Confidence 222 2236789999999999998865 899999988754333344333 334688999999997
Q ss_pred EEEEecCCCCCeEEEEECCCCceEEEeecCC-------------------------------------------------
Q 019847 204 VLATGGGREDGCIKIWNVQKGTCIHGIDAKA------------------------------------------------- 234 (335)
Q Consensus 204 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~------------------------------------------------- 234 (335)
+++.+ +.|++||+.+++.+..+....
T Consensus 161 l~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 235 (349)
T 1jmx_B 161 LYVAG-----PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 235 (349)
T ss_dssp EEEES-----SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred EEEcc-----CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence 66642 349999999988777665331
Q ss_pred --------------------cEeEEEeCC-CCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCC
Q 019847 235 --------------------QICGLEWNR-HHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDG 293 (335)
Q Consensus 235 --------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 293 (335)
.+..++++| ++++++++ ++.|.+||+.+++.+..+... ..+.+++|+|++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--------~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg 306 (349)
T 1jmx_B 236 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--------LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKG 306 (349)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--------ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSS
T ss_pred EEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--------cCeEEEEECccCeEEEEEcCC-CCccceEECCCC
Confidence 234556678 88877654 789999999999887776543 347899999999
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCC
Q 019847 294 LTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 294 ~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
++|++++.++.|++||+.+.+...
T Consensus 307 ~~l~~~~~~~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 307 DKLYLGGTFNDLAVFNPDTLEKVK 330 (349)
T ss_dssp SCEEEESBSSEEEEEETTTTEEEE
T ss_pred CEEEEecCCCeEEEEeccccceee
Confidence 999988889999999998765443
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-24 Score=203.26 Aligned_cols=278 Identities=9% Similarity=0.024 Sum_probs=212.1
Q ss_pred cccceeeeecCCceEEE-ecCCeEEEEEecC-CceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeE
Q 019847 16 DYYSKVIDWGRNNVLAV-ALGPVLFLWKWEN-GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV 93 (335)
Q Consensus 16 ~~~~~~~~~~~~~~~~~-~~~~~i~vw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 93 (335)
...+.++.|+++.++.. ..++.+.||.++. +.. ...+..|. .+...+|+|+|++|+++. ++.|.+|++...+.
T Consensus 203 ~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~--~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l- 277 (1045)
T 1k32_A 203 STHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKD--LRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKI- 277 (1045)
T ss_dssp SSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCS--CEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCE-
T ss_pred CCcccceEEeCCEEEEEEeccCceEEEEEeCCCCc--ceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceEe-
Confidence 44567788988866554 4578889998764 222 22333444 467789999999999884 89999999954443
Q ss_pred eeecc-----------cccceeEeeec-CCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCC-CEEEEEeecCCCEEE
Q 019847 94 RNLEG-----------HHRRVATSSWN-HWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSG-EVCGLKWSNEGNLLA 160 (335)
Q Consensus 94 ~~~~~-----------~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~ 160 (335)
..+.. |...+..++|+ | +++.|++++ ++.+.+|+...+.. ..+..|.. .+..++|+ +++.|+
T Consensus 278 ~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~s-dg~~l~ 352 (1045)
T 1k32_A 278 EKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYV--LKVPEPLRIRYVRRGGD-TKVAFI 352 (1045)
T ss_dssp EECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBE--EECSCCSCEEEEEECSS-SEEEEE
T ss_pred eeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCce--EEccCCCcceEEeeeEc-CCCeEE
Confidence 35544 34479999999 9 898888887 88999999875542 23556777 89999999 999999
Q ss_pred EEeCCCeEE-EEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee-cCCcEeE
Q 019847 161 SGGDDNVVR-IWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID-AKAQICG 238 (335)
Q Consensus 161 ~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~~~~ 238 (335)
+++.++.+. +||+.... ...+..|...+..++|+|+++.+++.+ .++.|++||+.+++...... +...+..
T Consensus 353 ~~s~~~~l~~~~d~~~~~----~~~l~~~~~~~~~~~~SpDG~~la~~~---~~~~v~~~d~~tg~~~~~~~~~~~~v~~ 425 (1045)
T 1k32_A 353 HGTREGDFLGIYDYRTGK----AEKFEENLGNVFAMGVDRNGKFAVVAN---DRFEIMTVDLETGKPTVIERSREAMITD 425 (1045)
T ss_dssp EEETTEEEEEEEETTTCC----EEECCCCCCSEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCEEEEEECSSSCCCC
T ss_pred EEECCCceEEEEECCCCC----ceEecCCccceeeeEECCCCCEEEEEC---CCCeEEEEECCCCceEEeccCCCCCccc
Confidence 999888888 88976532 233346778899999999998666554 68999999999998877774 4567899
Q ss_pred EEeCCCCceeeeeeeee----eecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 239 LEWNRHHKEILSGHGFS----ASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 239 ~~~~~~~~~~~~~~~~~----~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
++|+|+|++++.+..-. ....++.|++||+.+++ ...+..|...+..++|+|||++|+.++.++...+|+..
T Consensus 426 ~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 426 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 99999999998763100 00123699999999887 66777888889999999999999999998888888754
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-23 Score=172.34 Aligned_cols=250 Identities=9% Similarity=0.081 Sum_probs=175.6
Q ss_pred ccceeeeecCC-ceEEEec---CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCC-c
Q 019847 17 YYSKVIDWGRN-NVLAVAL---GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAET-S 90 (335)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~---~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~-~ 90 (335)
..+..++|+++ ++++++. ++.|++|++++++......+..+...+..++|+|+|++|++++ .++.|.+|++.. +
T Consensus 40 ~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g 119 (347)
T 3hfq_A 40 QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADG 119 (347)
T ss_dssp SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTS
T ss_pred CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCC
Confidence 34566888875 4666654 5899999998887655555555677889999999999998888 678999999963 2
Q ss_pred --eeEeeecc---------cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE--Eeec-CCCCEEEEEeecCC
Q 019847 91 --KLVRNLEG---------HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS--CIKA-HSGEVCGLKWSNEG 156 (335)
Q Consensus 91 --~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~-~~~~i~~~~~~~~~ 156 (335)
+.+..+.. ....+.+++|+| +++++++...++.|.+|++.....+.. .... ....+..++|+|+|
T Consensus 120 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg 198 (347)
T 3hfq_A 120 ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG 198 (347)
T ss_dssp CEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS
T ss_pred CeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC
Confidence 33333321 112478899999 777777777789999999984332221 1122 23467889999999
Q ss_pred CEEEE-EeCCCeEEEEEccCC-CcccceeeccCCC------CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC---c
Q 019847 157 NLLAS-GGDDNVVRIWERSKM-SSSKSLHRFTDHC------GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG---T 225 (335)
Q Consensus 157 ~~l~~-~~~dg~i~iwd~~~~-~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~---~ 225 (335)
+++++ ...++.|.+|+++.. .....+....... ..+..++|+|+|++++++.. .++.|.+|++... +
T Consensus 199 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~--~~~~v~v~~~~~~g~~~ 276 (347)
T 3hfq_A 199 QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR--GYNTLAVFAVTADGHLT 276 (347)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE--TTTEEEEEEECGGGCEE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC--CCCEEEEEEECCCCcEE
Confidence 96665 456789999998742 1112222222222 34888999999988877765 6899999999732 4
Q ss_pred eEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEE--ECCCCcee
Q 019847 226 CIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLW--KYPNMTKV 274 (335)
Q Consensus 226 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~--d~~~~~~~ 274 (335)
.+..+.. ...+..++|+|+|++++++. ..++.+.+| |..+++..
T Consensus 277 ~~~~~~~~~~~~~~~~~spdg~~l~v~~-----~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 277 LIQQISTEGDFPRDFDLDPTEAFVVVVN-----QNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEECSSSCCCEEEECTTSSEEEEEE-----TTTTEEEEEEECTTTCCEE
T ss_pred EeEEEecCCCCcCeEEECCCCCEEEEEE-----cCCCcEEEEEEeCCCCeEE
Confidence 4445554 34578999999999887662 456899999 55556554
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-24 Score=195.28 Aligned_cols=271 Identities=10% Similarity=0.084 Sum_probs=188.8
Q ss_pred cceeeeecCC-c-eEEEecC---------CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEe
Q 019847 18 YSKVIDWGRN-N-VLAVALG---------PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 18 ~~~~~~~~~~-~-~~~~~~~---------~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 86 (335)
.+..++|+++ + +++++.+ +.+++||+++++........+|...+..++|+|||++||+++. +.|++||
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~ 140 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA 140 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence 4778999985 4 4444443 7899999999886444333456666899999999999999985 7999999
Q ss_pred CCCceeEeeecccccce------------------eEeeecCCCCCEEEEeeCCC-------------------------
Q 019847 87 AETSKLVRNLEGHHRRV------------------ATSSWNHWNGHILTSGSKDK------------------------- 123 (335)
Q Consensus 87 ~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~~l~~~~~dg------------------------- 123 (335)
+.+++.......+...+ .++.|+| +++.|++++.++
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (723)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence 99888766655444333 7899999 999998887543
Q ss_pred ---------cEEEEecccCCeeeEEeecC------CCCEEEEEeecCCCEEEEEeCC----CeEEEEEccCCCcccceee
Q 019847 124 ---------SIINHDVRVSNNVTSCIKAH------SGEVCGLKWSNEGNLLASGGDD----NVVRIWERSKMSSSKSLHR 184 (335)
Q Consensus 124 ---------~i~~~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~ 184 (335)
.|++||+.++.. ...+..+ ...+..++|+|||+++++.... ..|++||+.++.......
T Consensus 220 ~~G~~~~~~~l~~~d~~~~~~-~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~- 297 (723)
T 1xfd_A 220 KAGSENPSISLHVIGLNGPTH-DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE- 297 (723)
T ss_dssp BTTSCCCEEEEEEEESSSSCC-CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE-
T ss_pred CCCCCCCeeEEEEEECCCCce-eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE-
Confidence 799999986653 2233333 5678999999999988776533 579999987654322111
Q ss_pred ccCCCCCe----eEEEecCCCCcEEEE-ecCCCCC------eEEEEE-CCCCce--EEEee-cCCcEeE-EEeCCCCcee
Q 019847 185 FTDHCGGV----KALAWSPHQVNVLAT-GGGREDG------CIKIWN-VQKGTC--IHGID-AKAQICG-LEWNRHHKEI 248 (335)
Q Consensus 185 ~~~~~~~v----~~~~~~~~~~~~~~~-~~g~~d~------~i~i~d-~~~~~~--~~~~~-~~~~~~~-~~~~~~~~~~ 248 (335)
..+...+ ..++|+|+|+.++.. +. .++ .|++|| ..+++. ...+. .+..+.. ++|+|+|+.+
T Consensus 298 -~~~~~~~~~~~~~~~~spdg~~l~~~~~~--~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l 374 (723)
T 1xfd_A 298 -DESEAWLHRQNEEPVFSKDGRKFFFIRAI--PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKI 374 (723)
T ss_dssp -EECSSCCCCCCCCCEECTTSCSEEEEEEE--CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEE
T ss_pred -eccCCEEeccCCCceEcCCCCeEEEEEec--ccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEE
Confidence 1123333 378999999988775 43 566 577788 444441 34443 2344554 6999999998
Q ss_pred eeeeeeeeecCC--CeEEEEECCCCc--eeecccC---CCCceeEeEEcCCCCEEEEEe
Q 019847 249 LSGHGFSASGDG--NKLCLWKYPNMT--KVGELQS---SNSRILDLSQSPDGLTVATAG 300 (335)
Q Consensus 249 ~~~~~~~~~~~~--~~i~i~d~~~~~--~~~~~~~---~~~~i~~~~~~~~~~~l~~~~ 300 (335)
+... ..+ +.+++|++.... ....+.. |...+..++|+|||++|+...
T Consensus 375 ~~~~-----~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 375 YFLS-----TEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp EEEE-----SSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred EEEE-----cCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 7542 334 788999876432 3334443 566789999999999888654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=197.35 Aligned_cols=281 Identities=12% Similarity=0.106 Sum_probs=195.6
Q ss_pred eeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeecCCCC---CceEEEEcCCCCEEEEEEC---------CCcEEEEe
Q 019847 20 KVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDD---YPTSVSWSHDAKTLAVGYM---------DSKLQLWD 86 (335)
Q Consensus 20 ~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------dg~i~iw~ 86 (335)
..++|+++ .+++.+.|+.|++||+.+++...... +|.. .+.+++|||||++|++++. ++.|++||
T Consensus 19 ~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 19 FFPNWISGQEYLHQSADNNIVLYNIETGQSYTILS--NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCCEESSSSEEEEECTTSCEEEEESSSCCEEEEEC--HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEc--cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 36788875 56667789999999999998655443 2322 4899999999999999876 68999999
Q ss_pred CCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCE-----------------EE
Q 019847 87 AETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEV-----------------CG 149 (335)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i-----------------~~ 149 (335)
+.+++.+.... ....+..++|+| +++.|+.+. ++.|++|++.++........++...+ .+
T Consensus 97 ~~~g~~~~~~~-l~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 97 LSNGEFVRGNE-LPRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTTTEECCSSC-CCSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCCCcccccee-cCcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 99988631111 135688999999 999988885 78999999986654322222333222 48
Q ss_pred EEeecCCCEEEEEeCCC----------------------------------eEEEEEccCCCcc--cce---eeccCCCC
Q 019847 150 LKWSNEGNLLASGGDDN----------------------------------VVRIWERSKMSSS--KSL---HRFTDHCG 190 (335)
Q Consensus 150 ~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~--~~~---~~~~~~~~ 190 (335)
++|+|||++|++++.|. .|++||+.+.... ..+ ..+.+|..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 99999999999988652 7889998764321 011 22345778
Q ss_pred CeeEEEecCCCCcEEEEec--CCCCCeEEEEE----CCCCceEEEee----c-CCcEe-----EEEeCCCCceeeeeeee
Q 019847 191 GVKALAWSPHQVNVLATGG--GREDGCIKIWN----VQKGTCIHGID----A-KAQIC-----GLEWNRHHKEILSGHGF 254 (335)
Q Consensus 191 ~v~~~~~~~~~~~~~~~~~--g~~d~~i~i~d----~~~~~~~~~~~----~-~~~~~-----~~~~~~~~~~~~~~~~~ 254 (335)
.+..++|+||+. ++++.. +.....|.+|| +.+++....+. . ...+. .+.|+|+|+.++..
T Consensus 254 ~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~--- 329 (719)
T 1z68_A 254 YFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI--- 329 (719)
T ss_dssp EEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE---
T ss_pred eEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEE---
Confidence 899999999974 555532 11123588999 87776654442 2 23344 78999999976542
Q ss_pred eeecCC--CeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC-----CcEEEEecCC
Q 019847 255 SASGDG--NKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD-----ETIRFWEAFG 312 (335)
Q Consensus 255 ~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~ 312 (335)
.+..+ ..|.+||+.+++ ...+..+...+..+.++ +++.|+..+.+ +..++|.+..
T Consensus 330 -~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 330 -FSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp -EECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred -EEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 11233 467778887766 44555566667787777 77777666654 8899998875
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=191.85 Aligned_cols=232 Identities=10% Similarity=0.030 Sum_probs=172.8
Q ss_pred CCCceEEEEcCCCCEEEEEEC-CCcEEEEeCCCceeEeeecccc-cceeEeeecCCCCCEEEEeeC---CCcEEEEeccc
Q 019847 58 DDYPTSVSWSHDAKTLAVGYM-DSKLQLWDAETSKLVRNLEGHH-RRVATSSWNHWNGHILTSGSK---DKSIINHDVRV 132 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~ 132 (335)
..+|++++|+|||++||+++. ||+++||++.+++..+ +..+. ..+..+.|+| + +++++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~sp-d-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGV-G-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTC-S-EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCC-C-eEEEEeccCCCCcceEEEEEec
Confidence 456999999999999999886 9999999997766554 44454 6899999998 6 78887775 45566766654
Q ss_pred --CCeeeEEeecCCCCEEEEEeecCCCE-EEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEec
Q 019847 133 --SNNVTSCIKAHSGEVCGLKWSNEGNL-LASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 133 --~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
..... .+.. ...+...+|+|+++. +++.+.++.+.+||+.++.. . .+..+.. .+++|+|||+.++.++
T Consensus 98 ~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~---~-~l~~~~~--~~~~~spDG~~la~~~- 168 (582)
T 3o4h_A 98 SRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL---R-ELARLPG--FGFVSDIRGDLIAGLG- 168 (582)
T ss_dssp TSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE---E-EEEEESS--CEEEEEEETTEEEEEE-
T ss_pred cCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE---E-EeecCCC--ceEEECCCCCEEEEEE-
Confidence 33222 2222 223456788888753 33334445566999876432 1 1222222 7899999998777555
Q ss_pred CCCC----CeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCC--eEEEEECCCCceeecccCCCCc
Q 019847 210 GRED----GCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGN--KLCLWKYPNMTKVGELQSSNSR 283 (335)
Q Consensus 210 g~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~ 283 (335)
.+ +.|++||+.+++......+...+..++|+|+|+.++++ ..++ .|++||+.+++.. .+..|...
T Consensus 169 --~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~------~~~~~~~i~~~d~~~~~~~-~~~~~~~~ 239 (582)
T 3o4h_A 169 --FFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGL------ETAREARLVTVDPRDGSVE-DLELPSKD 239 (582)
T ss_dssp --EEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEE------ECSSCEEEEEECTTTCCEE-ECCCSCSH
T ss_pred --EcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEc------cCCCeeEEEEEcCCCCcEE-EccCCCcC
Confidence 34 78999999988876544556678999999999999854 4566 8999999998887 77788888
Q ss_pred eeEeE--------EcCCCCEEEEEeCCCcEEEEec
Q 019847 284 ILDLS--------QSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 284 i~~~~--------~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
+..++ |+|||.++++++.||.+++|++
T Consensus 240 ~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 240 FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 88888 9999999999999999999999
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-23 Score=172.58 Aligned_cols=244 Identities=13% Similarity=0.099 Sum_probs=183.9
Q ss_pred ceeeeecCC--ceEEEe-cCCeEEEEEecCCceeeEEeecC---CCCCceEEEEcCCCCEEEEEE------------CCC
Q 019847 19 SKVIDWGRN--NVLAVA-LGPVLFLWKWENGKVKKLLQVPG---EDDYPTSVSWSHDAKTLAVGY------------MDS 80 (335)
Q Consensus 19 ~~~~~~~~~--~~~~~~-~~~~i~vw~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~------------~dg 80 (335)
+..++|+++ .+++++ .++.|.+||+.+++....+.... |...+.+++|+|+|++|+++. .++
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCc
Confidence 566888875 344444 57899999999998766555432 122678899999999998886 579
Q ss_pred cEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEE
Q 019847 81 KLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLA 160 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 160 (335)
.|.+||+.+++.+..+.. ...+..++|+| +++.|+++ ++.|.+||+.+++. ...+..+.. ...+.|+|+++.++
T Consensus 116 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~-~~~~~~~~~-~~~~~~s~dg~~l~ 189 (337)
T 1pby_B 116 RVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTL-VEDKPIQSW-EAETYAQPDVLAVW 189 (337)
T ss_dssp EEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEE-EEEECSTTT-TTTTBCCCBCCCCC
T ss_pred eEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcE-eeeeecccc-CCCceeCCCccEEe
Confidence 999999999988877764 45688899999 88877777 68999999986654 333333320 01237889888665
Q ss_pred EEeCCC------------------------eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeE
Q 019847 161 SGGDDN------------------------VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCI 216 (335)
Q Consensus 161 ~~~~dg------------------------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 216 (335)
..+.++ .|.+||+.+.... ...+..+...+.+++|+|+++.++++ ++.|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg~~l~~~-----~~~v 262 (337)
T 1pby_B 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MREVRIMDVFYFSTAVNPAKTRAFGA-----YNVL 262 (337)
T ss_dssp CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEEEEECSSCEEEEEECTTSSEEEEE-----ESEE
T ss_pred eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce--EeecCCCCCceeeEEECCCCCEEEEe-----CCeE
Confidence 544332 4689998765432 33344566678899999999876664 6899
Q ss_pred EEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC
Q 019847 217 KIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN 281 (335)
Q Consensus 217 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 281 (335)
++||+.+++.+..+..+..+.+++|+|++++++++ +.++.|.+||+.+++.+..+..+.
T Consensus 263 ~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~------~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 263 ESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG------GALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE------SBSSEEEEEETTTCCEEEEEECGG
T ss_pred EEEECCCCcCcceecCCCceeeEEECCCCCEEEEE------cCCCcEEEEECcCCcEEEEEEcCC
Confidence 99999999998888887888999999999988776 558999999999999888776543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-21 Score=161.61 Aligned_cols=264 Identities=11% Similarity=0.057 Sum_probs=180.9
Q ss_pred cccceeeeecCC-c-eEEEecC----CeEEEEEecC--CceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEe
Q 019847 16 DYYSKVIDWGRN-N-VLAVALG----PVLFLWKWEN--GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWD 86 (335)
Q Consensus 16 ~~~~~~~~~~~~-~-~~~~~~~----~~i~vw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~ 86 (335)
......++|+++ + +++++.+ +.|.+|+++. ++.........+...+..+++ ++++|++++ .++.|.+|+
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~ 126 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFP 126 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEE
Confidence 344566888874 3 5555554 7999999876 565555555555667788888 888887776 578999999
Q ss_pred CCCceeEeeec--------------ccccceeEeeecCCCCCEEEEe-eCCCcEEEEecccCCe------e------eEE
Q 019847 87 AETSKLVRNLE--------------GHHRRVATSSWNHWNGHILTSG-SKDKSIINHDVRVSNN------V------TSC 139 (335)
Q Consensus 87 ~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~------~------~~~ 139 (335)
+.....+..+. .+...+.+++|+| +++.++++ ..++.|.+|++..... + ...
T Consensus 127 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 127 IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 97543332221 1122357899999 88855554 4588999999875442 2 122
Q ss_pred eecCCCCEEEEEeecCCCEEEEEe-CCCeEEEEEccCCCccccee---eccCCCCCeeEEEecCCCCcEEEEecCCC-CC
Q 019847 140 IKAHSGEVCGLKWSNEGNLLASGG-DDNVVRIWERSKMSSSKSLH---RFTDHCGGVKALAWSPHQVNVLATGGGRE-DG 214 (335)
Q Consensus 140 ~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~g~~-d~ 214 (335)
...+......++|+|+++++++++ .++.|.+||++.+. ...+. ....+......++|+|++++++++.. . ++
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~-~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~--~~~~ 282 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM-LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR--LKAD 282 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE-EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC--SSSC
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc-eEEeEEEecCCCCCCCcccEEECCCCCEEEEECC--CCCC
Confidence 234456688999999999888777 68999999988532 12222 22333455789999999988877764 4 68
Q ss_pred eEEEEECC--CCc--eEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEE--ECCCCceeeccc-CCCCceeEe
Q 019847 215 CIKIWNVQ--KGT--CIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLW--KYPNMTKVGELQ-SSNSRILDL 287 (335)
Q Consensus 215 ~i~i~d~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~--d~~~~~~~~~~~-~~~~~i~~~ 287 (335)
.|.+|++. +++ .+..+.....+..++|+|+|++++++. ..++.|.+| |..+++...... .+...+.|+
T Consensus 283 ~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~-----~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v 357 (361)
T 3scy_A 283 GVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVAC-----RDTNVIQIFERDQATGLLTDIKKDIKVDKPVCL 357 (361)
T ss_dssp EEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEE-----TTTTEEEEEEECTTTCCEEECSCCEECSSEEEE
T ss_pred EEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEE-----CCCCCEEEEEEECCCCcEeecceeeeCCCCeEE
Confidence 99999985 444 444455555788999999999887763 467899996 445666654432 234467888
Q ss_pred EEc
Q 019847 288 SQS 290 (335)
Q Consensus 288 ~~~ 290 (335)
.|.
T Consensus 358 ~~~ 360 (361)
T 3scy_A 358 KFV 360 (361)
T ss_dssp EEE
T ss_pred EEc
Confidence 875
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=178.69 Aligned_cols=217 Identities=12% Similarity=0.156 Sum_probs=161.9
Q ss_pred CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC----------eee----EEeecCCC
Q 019847 80 SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN----------NVT----SCIKAHSG 145 (335)
Q Consensus 80 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~----------~~~----~~~~~~~~ 145 (335)
+.+++|+... . .....+..+++++ ++.++++++.++ +++|+..... ... .....+..
T Consensus 23 ~~vri~~~~~-~------~~~~~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (434)
T 2oit_A 23 KKVRIFDSPE-E------LPKERSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKF 93 (434)
T ss_dssp CEEECSCCCS-S------CCCSCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSS
T ss_pred eeEEecCCcc-c------cCCCCccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCC
Confidence 4678876431 1 1234678899999 888999999888 8888764211 000 01123567
Q ss_pred CEEEEEeecCCCEEE----EEeCCCeEEEEEccCC--------CcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC
Q 019847 146 EVCGLKWSNEGNLLA----SGGDDNVVRIWERSKM--------SSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213 (335)
Q Consensus 146 ~i~~~~~~~~~~~l~----~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 213 (335)
.|.+++|+|++++|+ +++.|+.|++||+++. .....+..+.+|...|.+++|+|++..++++++ .|
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s--~D 171 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL--AD 171 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE--TT
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE--CC
Confidence 899999999999999 7888999999998754 111224566778999999999999667787776 89
Q ss_pred CeEEEEECCCCceEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC-------CCcee
Q 019847 214 GCIKIWNVQKGTCIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS-------NSRIL 285 (335)
Q Consensus 214 ~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-------~~~i~ 285 (335)
|.|++||++++..+.... +...+.+++|+|+|+++++| +.|+.|++||.+ ++....+..| ...|.
T Consensus 172 g~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasg------s~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~ 244 (434)
T 2oit_A 172 GSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVG------KQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVL 244 (434)
T ss_dssp SCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEE------ETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEE
T ss_pred CeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEE------cCCCcEEEEccC-CcccccccCCcccCCCCceeEE
Confidence 999999999986655444 45689999999999999988 679999999998 5555444333 33799
Q ss_pred EeEEcCCCCEEEEE-eCCCc------EEEEecCCCC
Q 019847 286 DLSQSPDGLTVATA-GADET------IRFWEAFGPS 314 (335)
Q Consensus 286 ~~~~~~~~~~l~~~-~~dg~------v~iw~~~~~~ 314 (335)
+++|++++.++++. +.||. +++|++...+
T Consensus 245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred EEEEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence 99999998877654 34433 8999998654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.8e-23 Score=181.87 Aligned_cols=266 Identities=12% Similarity=0.082 Sum_probs=185.9
Q ss_pred cccceeeeecCC--ceEEEec-CCeEEEEEecCCceeeEEeecCCC-CCceEEEEcCCCCEEEEEEC---CCcEEEEeCC
Q 019847 16 DYYSKVIDWGRN--NVLAVAL-GPVLFLWKWENGKVKKLLQVPGED-DYPTSVSWSHDAKTLAVGYM---DSKLQLWDAE 88 (335)
Q Consensus 16 ~~~~~~~~~~~~--~~~~~~~-~~~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~ 88 (335)
...+.+++++++ .++.++. +++++||++++++..+ +..|. ..+..++|+|| +.+++++. +...++|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~---lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK---LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE---CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe---eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 445777777764 4555565 9999999998776433 33444 57899999999 77777764 4555665543
Q ss_pred C---ceeEeeecccccceeEeeecCCCC-CEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC
Q 019847 89 T---SKLVRNLEGHHRRVATSSWNHWNG-HILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD 164 (335)
Q Consensus 89 ~---~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (335)
. +... .+... ..+...+|+| ++ ..+++.+.++.+.+||+.+++. ..... +.. .+++|+|||++|++++.
T Consensus 97 ~~~~g~~~-~l~~~-~~~~~~~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~-~~l~~-~~~--~~~~~spDG~~la~~~~ 169 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAV-KPMRILSGVD-TGEAVVFTGATEDRVALYALDGGGL-RELAR-LPG--FGFVSDIRGDLIAGLGF 169 (582)
T ss_dssp TTSTTCCE-ECTTS-CSBEEEEEEE-CSSCEEEEEECSSCEEEEEEETTEE-EEEEE-ESS--CEEEEEEETTEEEEEEE
T ss_pred ccCCCccc-cccCC-CCceeeeeCC-CCCeEEEEecCCCCceEEEccCCcE-EEeec-CCC--ceEEECCCCCEEEEEEE
Confidence 2 3322 33322 2344668888 55 4455555556666999986543 33333 333 78999999999998887
Q ss_pred C----CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC--eEEEEECCCCceEEEeec-CCcEe
Q 019847 165 D----NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG--CIKIWNVQKGTCIHGIDA-KAQIC 237 (335)
Q Consensus 165 d----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~~-~~~~~ 237 (335)
+ +.|++||+.++. ...+..|...+..++|+|||+.++ ++. .++ .|++||+.+++.. .+.. ...+.
T Consensus 170 ~~~~~~~i~~~d~~~g~----~~~l~~~~~~~~~~~~SpDG~~l~-~~~--~~~~~~i~~~d~~~~~~~-~~~~~~~~~~ 241 (582)
T 3o4h_A 170 FGGGRVSLFTSNLSSGG----LRVFDSGEGSFSSASISPGMKVTA-GLE--TAREARLVTVDPRDGSVE-DLELPSKDFS 241 (582)
T ss_dssp EETTEEEEEEEETTTCC----CEEECCSSCEEEEEEECTTSCEEE-EEE--CSSCEEEEEECTTTCCEE-ECCCSCSHHH
T ss_pred cCCCCeEEEEEcCCCCC----ceEeecCCCccccceECCCCCEEE-Ecc--CCCeeEEEEEcCCCCcEE-EccCCCcChh
Confidence 7 789999987643 335567888899999999998777 443 677 8999999998877 4443 33455
Q ss_pred EEE--------eCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCc---EE
Q 019847 238 GLE--------WNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADET---IR 306 (335)
Q Consensus 238 ~~~--------~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~---v~ 306 (335)
.+. |+|+|..++++ +.++.+++|++ ++... .+.+.+.+++|+ +++++++++.+.. +.
T Consensus 242 ~~~~~~~~~~~~spdg~~~~~~------~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~ 309 (582)
T 3o4h_A 242 SYRPTAITWLGYLPDGRLAVVA------RREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIV 309 (582)
T ss_dssp HHCCSEEEEEEECTTSCEEEEE------EETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred hhhhccccceeEcCCCcEEEEE------EcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEE
Confidence 566 99999666655 56899999999 66554 334678899999 9999998887754 66
Q ss_pred EEecCC
Q 019847 307 FWEAFG 312 (335)
Q Consensus 307 iw~~~~ 312 (335)
+|+..+
T Consensus 310 ~~d~~~ 315 (582)
T 3o4h_A 310 SLPSGE 315 (582)
T ss_dssp EETTCC
T ss_pred EEcCCC
Confidence 666543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-22 Score=171.08 Aligned_cols=286 Identities=12% Similarity=0.049 Sum_probs=190.8
Q ss_pred cceeeeecCC--ceEEEec-CC--eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 18 YSKVIDWGRN--NVLAVAL-GP--VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 18 ~~~~~~~~~~--~~~~~~~-~~--~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
++...+|+++ .++.++. ++ .|.+||+.+++...+. .++...+..++|+|||+.|+.++.++.|++||+.+++.
T Consensus 37 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt--~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 37 YFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT--EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE 114 (388)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC--CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred hhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee--eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 3344678874 4555555 55 4888898888765433 34555555778999999999999999999999999987
Q ss_pred EeeecccccceeEeee--cCCCCCEEEEe----------------------eCCCcEEEEecccCCeeeEEeecCCCCEE
Q 019847 93 VRNLEGHHRRVATSSW--NHWNGHILTSG----------------------SKDKSIINHDVRVSNNVTSCIKAHSGEVC 148 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~--~~~~~~~l~~~----------------------~~dg~i~~~d~~~~~~~~~~~~~~~~~i~ 148 (335)
......+...+....| ++ ++..++.. ..+..|.+||+.+++. ..+..+...+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~~~~ 191 (388)
T 3pe7_A 115 NVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES--TVILQENQWLG 191 (388)
T ss_dssp EEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE--EEEEEESSCEE
T ss_pred eeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce--EEeecCCcccc
Confidence 7666655555544443 67 78877642 2446899999987653 33445667799
Q ss_pred EEEeec-CCCEEEEEeCC------CeEEEEEccCCCcccceeeccCCC--CCeeEEEecCCCCcEEEEecC--CCCCeEE
Q 019847 149 GLKWSN-EGNLLASGGDD------NVVRIWERSKMSSSKSLHRFTDHC--GGVKALAWSPHQVNVLATGGG--REDGCIK 217 (335)
Q Consensus 149 ~~~~~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~g--~~d~~i~ 217 (335)
.++|+| +++.|+....+ ..|.++|+.... ...+..+. ..+..+.|+|+|+.++..+.. ..+..|+
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (388)
T 3pe7_A 192 HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN----MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIY 267 (388)
T ss_dssp EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC----CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEE
T ss_pred ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc----eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEE
Confidence 999999 99999887764 367778865432 22333333 247788999999888665431 0122499
Q ss_pred EEECCCCceEEEeecCCc------EeEEEeCCCCceeeeeeee---eeecCCCeEEEEECCCCceeecccCCCC------
Q 019847 218 IWNVQKGTCIHGIDAKAQ------ICGLEWNRHHKEILSGHGF---SASGDGNKLCLWKYPNMTKVGELQSSNS------ 282 (335)
Q Consensus 218 i~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~i~d~~~~~~~~~~~~~~~------ 282 (335)
+||+.+++.......... .....|+|+|+.++....- .....+..|++||+.+++. ..+..+..
T Consensus 268 ~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~ 346 (388)
T 3pe7_A 268 SADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFE 346 (388)
T ss_dssp EECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBT
T ss_pred EEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccc
Confidence 999999875433222220 1224789999988753100 0013467899999988765 34444444
Q ss_pred -----ceeEeEEcCCCCEEEEEe-CCCcEEEEecCCC
Q 019847 283 -----RILDLSQSPDGLTVATAG-ADETIRFWEAFGP 313 (335)
Q Consensus 283 -----~i~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~ 313 (335)
.+..++|+|||+.|+..+ .+|...+|.+.-.
T Consensus 347 ~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 347 GDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp TBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred cccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence 478899999998887665 5788888877644
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-22 Score=165.68 Aligned_cols=236 Identities=12% Similarity=0.091 Sum_probs=174.6
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEE-ECCCcEEEEeCCCceeEeeeccc------c
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVG-YMDSKLQLWDAETSKLVRNLEGH------H 100 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~------~ 100 (335)
.+++.+.++.|++||..+++....+... ....+..++|+|++++++++ ..++.|.+||+.+++.+..+... .
T Consensus 13 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~ 91 (349)
T 1jmx_B 13 YMIVTNYPNNLHVVDVASDTVYKSCVMP-DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG 91 (349)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECS-SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEE
T ss_pred EEEEeCCCCeEEEEECCCCcEEEEEecC-CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccc
Confidence 4556678999999999999876665543 22257899999999876554 46899999999999888776532 2
Q ss_pred cceeEeeecCCCCCEEEEeeCC------------CcEEEEecccCCee--eEEeecCCCCEEEEEeecCCCEEEEEeCCC
Q 019847 101 RRVATSSWNHWNGHILTSGSKD------------KSIINHDVRVSNNV--TSCIKAHSGEVCGLKWSNEGNLLASGGDDN 166 (335)
Q Consensus 101 ~~v~~~~~~~~~~~~l~~~~~d------------g~i~~~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 166 (335)
..+..++|+| +++.+++++.+ +.|.+||+.+++.. .... .+...+.+++|+|+++ +++++ +
T Consensus 92 ~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~-l~~~~--~ 166 (349)
T 1jmx_B 92 RSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGS-LYVAG--P 166 (349)
T ss_dssp ECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSC-EEEES--S
T ss_pred ccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECCCCc-EEEcc--C
Confidence 3478999999 89988888865 89999999864321 2222 2444688999999999 55554 3
Q ss_pred eEEEEEccCCCcccceeecc------------------------------------------------------------
Q 019847 167 VVRIWERSKMSSSKSLHRFT------------------------------------------------------------ 186 (335)
Q Consensus 167 ~i~iwd~~~~~~~~~~~~~~------------------------------------------------------------ 186 (335)
.|++||+.+......+..-.
T Consensus 167 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
T 1jmx_B 167 DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 246 (349)
T ss_dssp SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE
T ss_pred cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEE
Confidence 49999987643221111000
Q ss_pred -----CCCCCeeEEEecC-CCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCC
Q 019847 187 -----DHCGGVKALAWSP-HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDG 260 (335)
Q Consensus 187 -----~~~~~v~~~~~~~-~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (335)
.+...+..++|+| +++.++++ ++.|.+||+.+++.+..+..+..+.+++|+|+++.++++ +.+
T Consensus 247 ~~~~~~~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~------~~~ 315 (349)
T 1jmx_B 247 TQEFADLTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLG------GTF 315 (349)
T ss_dssp EEEEEECSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEE------SBS
T ss_pred ecccccCCCcceeeEecCCCCCEEEEE-----cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEe------cCC
Confidence 0011345677889 88766653 679999999999998888877778899999999988775 557
Q ss_pred CeEEEEECCCCceeecccCC
Q 019847 261 NKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 261 ~~i~i~d~~~~~~~~~~~~~ 280 (335)
+.|.+||..+++.+..+..+
T Consensus 316 ~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 316 NDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SEEEEEETTTTEEEEEEECS
T ss_pred CeEEEEeccccceeeeeecC
Confidence 99999999999888777654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-22 Score=180.83 Aligned_cols=275 Identities=13% Similarity=0.147 Sum_probs=188.7
Q ss_pred ceeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeecCCCCC-----ceEEEEcCCCCEEEEEECC---------CcEE
Q 019847 19 SKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDY-----PTSVSWSHDAKTLAVGYMD---------SKLQ 83 (335)
Q Consensus 19 ~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------g~i~ 83 (335)
...+.|+++ .+++.+ |+.|++||+.+++.... +.+|... ...++|||||++|+.++.+ +.+.
T Consensus 19 ~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVF--LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEE--ECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred ccccEECCCCcEEEEc-CCcEEEEECCCCceEEE--EechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 446899986 455544 99999999999987544 3455432 2448899999999998875 6678
Q ss_pred EEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCE----------------
Q 019847 84 LWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEV---------------- 147 (335)
Q Consensus 84 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i---------------- 147 (335)
+||+.+++.. .+..+...+...+|+| +++.|+.+. ++.|++|++.++........++...+
T Consensus 96 ~~d~~~~~~~-~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 96 IYDLNKRQLI-TEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEETTTTEEC-CSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEECCCCcEE-EcccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 9999998854 4666778899999999 999888874 68999999986654322222333323
Q ss_pred -EEEEeecCCCEEEEEeCCCe-EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC--
Q 019847 148 -CGLKWSNEGNLLASGGDDNV-VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK-- 223 (335)
Q Consensus 148 -~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-- 223 (335)
..+.|||||+.||.++.|.. +.+|++....... .+...+..+.+.+.|.. . ....|++||+.+
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~------~~~~~~~~~~yp~~G~~-----~--~~~~l~v~d~~~~~ 239 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES------LQYPKTVRVPYPKAGAV-----N--PTVKFFVVNTDSLS 239 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT------CSSCEEEEEECCBTTSC-----C--CEEEEEEEETTSCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCC------CCCCcceeecCCCCcCc-----C--CeeEEEEEECCCCC
Confidence 34899999999999876554 8888864322111 23445667777776642 1 345799999998
Q ss_pred -Cc--eEEEee-------cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc----ee--ecc--cCCCCcee
Q 019847 224 -GT--CIHGID-------AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT----KV--GEL--QSSNSRIL 285 (335)
Q Consensus 224 -~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~----~~--~~~--~~~~~~i~ 285 (335)
++ ....+. +...+..++|+|+|+.++.. ......+..|.+||+.+++ +. ..+ ..|...+.
T Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~--~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~ 317 (740)
T 4a5s_A 240 SVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW--LRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVG 317 (740)
T ss_dssp SSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE--EESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSS
T ss_pred CCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE--eCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEc
Confidence 73 222332 33458899999999966543 1122345579999999887 22 222 34555554
Q ss_pred -----EeEEcCCCCEEE-EEe-CCC--cEEEEecCCCC
Q 019847 286 -----DLSQSPDGLTVA-TAG-ADE--TIRFWEAFGPS 314 (335)
Q Consensus 286 -----~~~~~~~~~~l~-~~~-~dg--~v~iw~~~~~~ 314 (335)
..+|+|||+.|+ ..+ .+| .|++|++.++.
T Consensus 318 ~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 318 RFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp SSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred cCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 789999999877 555 344 47777777654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-20 Score=154.28 Aligned_cols=249 Identities=10% Similarity=0.122 Sum_probs=188.9
Q ss_pred CCCceEEEEcCCCCEEEEEECC------------------------CcEEEEeCCCceeEeeec-ccccceeEeeecCCC
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMD------------------------SKLQLWDAETSKLVRNLE-GHHRRVATSSWNHWN 112 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~d------------------------g~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 112 (335)
-..+.+++++|+|+++++...+ +.|.+||..+++.+..+. .+-.....+++++ +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 3568999999999988887766 479999999898876664 3345788999999 8
Q ss_pred CCEEEEeeCCCcEEEEecccCCeeeEEe---------ecCCCCEEEEEeec-CCCEEEEEe-CCCeEEEEEccCCCcccc
Q 019847 113 GHILTSGSKDKSIINHDVRVSNNVTSCI---------KAHSGEVCGLKWSN-EGNLLASGG-DDNVVRIWERSKMSSSKS 181 (335)
Q Consensus 113 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~---------~~~~~~i~~~~~~~-~~~~l~~~~-~dg~i~iwd~~~~~~~~~ 181 (335)
++++++...++.|++||..........+ ..+......++++| +++++++.+ .++.|++||.. + ..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g---~~ 177 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-G---KF 177 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-S---CE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-C---CE
Confidence 8898888889999999986442233333 23445789999999 788888876 68999999943 2 22
Q ss_pred eeeccC----------CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec---CCcEeEEEeCCCCcee
Q 019847 182 LHRFTD----------HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA---KAQICGLEWNRHHKEI 248 (335)
Q Consensus 182 ~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 248 (335)
+..+.. +-.....++++|++..++++.. .++.|++||..+++.+..+.. ...+..++++| +..+
T Consensus 178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~--~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~ 254 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR--ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLF 254 (329)
T ss_dssp EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET--TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEE
T ss_pred EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC--CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEE
Confidence 333321 2234789999999667888776 789999999998998888753 34678899999 3333
Q ss_pred ee-eeeeeeecCCCeEEEEECCCCceeeccc---CCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 019847 249 LS-GHGFSASGDGNKLCLWKYPNMTKVGELQ---SSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 249 ~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~ 314 (335)
.. +..+.+...+..|++|+..+++.+..+. .+...+..++++|+|.++++...++.|++|++....
T Consensus 255 ~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 255 AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp EEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence 22 2223334557799999999999988873 566678999999999888888899999999987643
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-19 Score=145.91 Aligned_cols=240 Identities=15% Similarity=0.231 Sum_probs=175.5
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecc------cccceeEeeecCCCCCEEEEeeC-CCcEEEE
Q 019847 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEG------HHRRVATSSWNHWNGHILTSGSK-DKSIINH 128 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~ 128 (335)
++-..+.+++++|+++++++...++.|.+||.+ ++.+..+.. +...+..+++.+.++.++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888889999999987 666655532 33568899995427777666643 8899999
Q ss_pred ecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeecc--CCCCCeeEEEecCCCCcEEE
Q 019847 129 DVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFT--DHCGGVKALAWSPHQVNVLA 206 (335)
Q Consensus 129 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~ 206 (335)
|. ++.........+...+..++++|+++++++...++.|.+||... +.+..+. .+...+..++++|++. +++
T Consensus 106 d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~p~~i~~~~~g~-l~v 179 (286)
T 1q7f_A 106 NQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG----NVLHKFGCSKHLEFPNGVVVNDKQE-IFI 179 (286)
T ss_dssp CT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS----CEEEEEECTTTCSSEEEEEECSSSE-EEE
T ss_pred CC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC----CEEEEeCCCCccCCcEEEEECCCCC-EEE
Confidence 94 34443332223446789999999999888877889999999542 2233332 3445689999999985 666
Q ss_pred EecCCCCCeEEEEECCCCceEEEeecC---CcEeEEEeCCCCceeeeeeeeeeecCCC-eEEEEECCCCceeecccCCCC
Q 019847 207 TGGGREDGCIKIWNVQKGTCIHGIDAK---AQICGLEWNRHHKEILSGHGFSASGDGN-KLCLWKYPNMTKVGELQSSNS 282 (335)
Q Consensus 207 ~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~d~~~~~~~~~~~~~~~ 282 (335)
+.. .++.|++||. +++.+..+... ..+..++++++|..+++. ..++ .|.+||. +++.+..+..+..
T Consensus 180 ~~~--~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~------~~~~~~i~~~~~-~g~~~~~~~~~~~ 249 (286)
T 1q7f_A 180 SDN--RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIAD------NHNNFNLTIFTQ-DGQLISALESKVK 249 (286)
T ss_dssp EEG--GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEE------CSSSCEEEEECT-TSCEEEEEEESSC
T ss_pred EEC--CCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEe------CCCCEEEEEECC-CCCEEEEEcccCC
Confidence 654 6899999997 46666666543 468899999999877665 4454 9999995 5666666654432
Q ss_pred --ceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 283 --RILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 283 --~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
.+.+++++|+|+++++ +.|+.|++|++...
T Consensus 250 ~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 250 HAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 4779999999987776 67999999998654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-20 Score=158.99 Aligned_cols=283 Identities=10% Similarity=0.014 Sum_probs=182.9
Q ss_pred cceeeeecCC-c-eEEEec---CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 18 YSKVIDWGRN-N-VLAVAL---GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 18 ~~~~~~~~~~-~-~~~~~~---~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
++..++|+++ . ++.+.. +..|.+||+.+++..... .++......+.|+|+|++|+.++.++.|++||+.+++.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~--~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~ 114 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT--EGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE 114 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC--CSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee--cCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc
Confidence 3566788874 3 444433 237888999888754332 22222233478999999999999999999999998876
Q ss_pred EeeecccccceeE-------------------eeecCCCCCEEEEe-----eCCCcEEEEecccCCeeeEEeecCCCCEE
Q 019847 93 VRNLEGHHRRVAT-------------------SSWNHWNGHILTSG-----SKDKSIINHDVRVSNNVTSCIKAHSGEVC 148 (335)
Q Consensus 93 ~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~-----~~dg~i~~~d~~~~~~~~~~~~~~~~~i~ 148 (335)
......+...... +.|+| +++.++.. ..+..|.+||+.+++. .. +..+...+.
T Consensus 115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~-~~~~~~~~~ 191 (396)
T 3c5m_A 115 QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGEL-EV-IHQDTAWLG 191 (396)
T ss_dssp EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCE-EE-EEEESSCEE
T ss_pred EEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcE-Ee-eccCCcccc
Confidence 5554433332222 45667 66655544 4567899999986553 22 335677899
Q ss_pred EEEeec-CCCEEEEEeCC------CeEEEEEccCCCcccceeeccCC--CCCeeEEEecCCCCcEEEEecC--CCCCeEE
Q 019847 149 GLKWSN-EGNLLASGGDD------NVVRIWERSKMSSSKSLHRFTDH--CGGVKALAWSPHQVNVLATGGG--REDGCIK 217 (335)
Q Consensus 149 ~~~~~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~g--~~d~~i~ 217 (335)
.+.|+| +++.|+..+.+ ..|.+||+.... ...+..+ ...+..+.|+|+++.++..... ..++.|+
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN----VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC----CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc----eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 999999 78877776654 358888876432 2222222 2357789999999887776531 0124599
Q ss_pred EEECCCCceEEEeecCCcEeEEEeCC-CCceeeeeeee----------eeecCCCeEEEEECCCCceeecccCCCC----
Q 019847 218 IWNVQKGTCIHGIDAKAQICGLEWNR-HHKEILSGHGF----------SASGDGNKLCLWKYPNMTKVGELQSSNS---- 282 (335)
Q Consensus 218 i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~~~~~~~~i~i~d~~~~~~~~~~~~~~~---- 282 (335)
+||+.+++......... .. +.|+| +|+.++....- .....+..|++||+.+++.. .+..+..
T Consensus 268 ~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~ 344 (396)
T 3c5m_A 268 KANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDV 344 (396)
T ss_dssp EECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCC
T ss_pred EEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCcccc
Confidence 99999887654333322 33 88999 99977754210 00013578999999877643 3444433
Q ss_pred -------ceeEeEEcCCCCEEEEEeC-CCcEEEEecCC
Q 019847 283 -------RILDLSQSPDGLTVATAGA-DETIRFWEAFG 312 (335)
Q Consensus 283 -------~i~~~~~~~~~~~l~~~~~-dg~v~iw~~~~ 312 (335)
.+..++|+|||+.|+.++. ++...+|.+..
T Consensus 345 ~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~ 382 (396)
T 3c5m_A 345 LDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADV 382 (396)
T ss_dssp BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred ccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEE
Confidence 2567899999998877664 56666666553
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-21 Score=175.03 Aligned_cols=284 Identities=11% Similarity=0.086 Sum_probs=186.8
Q ss_pred ceeeeecCC-c-eEEEec---------CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeC
Q 019847 19 SKVIDWGRN-N-VLAVAL---------GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDA 87 (335)
Q Consensus 19 ~~~~~~~~~-~-~~~~~~---------~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 87 (335)
+.+++|+++ + ++.++. ++.|++||+++++......+ ...+..++|||||++||++. ++.|++|++
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~ 137 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQR 137 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESS
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeC
Confidence 678899985 4 444443 58999999999876211222 24588999999999999986 789999999
Q ss_pred CCceeEeeec-ccccce-----------------eEeeecCCCCCEEEEeeCCC--------------------------
Q 019847 88 ETSKLVRNLE-GHHRRV-----------------ATSSWNHWNGHILTSGSKDK-------------------------- 123 (335)
Q Consensus 88 ~~~~~~~~~~-~~~~~v-----------------~~~~~~~~~~~~l~~~~~dg-------------------------- 123 (335)
.+++...... ++...+ .++.|+| +++.|++++.|.
T Consensus 138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~ 216 (719)
T 1z68_A 138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK 216 (719)
T ss_dssp TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence 9887654332 222212 5899999 999999887552
Q ss_pred --------cEEEEecccCCee--eE-----EeecCCCCEEEEEeecCCCEEEEEeCC----CeEEEEE----ccCCCccc
Q 019847 124 --------SIINHDVRVSNNV--TS-----CIKAHSGEVCGLKWSNEGNLLASGGDD----NVVRIWE----RSKMSSSK 180 (335)
Q Consensus 124 --------~i~~~d~~~~~~~--~~-----~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~ 180 (335)
.|++||+.++... .. .+..|...+..++|+||++++++.... ..|.+|| +.++....
T Consensus 217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 217 AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence 7889998865431 11 123577889999999998777764432 2488889 65543222
Q ss_pred cee-eccCCCCCee-----EEEecCCCCcEEEE-ecCCCCCeEEEEECCCCceEEEee-cCCcEeEEEeCCCCceeeeee
Q 019847 181 SLH-RFTDHCGGVK-----ALAWSPHQVNVLAT-GGGREDGCIKIWNVQKGTCIHGID-AKAQICGLEWNRHHKEILSGH 252 (335)
Q Consensus 181 ~~~-~~~~~~~~v~-----~~~~~~~~~~~~~~-~~g~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 252 (335)
... ....|...+. .+.|+|+|+.++.. ........|.+||+.+++. ..+. ....+..+.+. +++.++...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~~~~~~-d~~~i~~~~ 374 (719)
T 1z68_A 297 TQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGKWEAINIFRV-TQDSLFYSS 374 (719)
T ss_dssp GGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSSSCEEEEEEE-CSSEEEEEE
T ss_pred EEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccCceEEEEEEEE-eCCEEEEEE
Confidence 221 0034666666 78999999876653 3211233688888887764 3343 34456677766 777776541
Q ss_pred eeeeecC----CCeEEEEECCC--Cc-eeecc----cCCCCceeEeEEcCCCCEEEE-EeCC--CcEEEEecCCCC
Q 019847 253 GFSASGD----GNKLCLWKYPN--MT-KVGEL----QSSNSRILDLSQSPDGLTVAT-AGAD--ETIRFWEAFGPS 314 (335)
Q Consensus 253 ~~~~~~~----~~~i~i~d~~~--~~-~~~~~----~~~~~~i~~~~~~~~~~~l~~-~~~d--g~v~iw~~~~~~ 314 (335)
.. ++..++|.+.. +. ....+ .+|...+..+.|+|++++++. ++.+ ..+.+|++.+++
T Consensus 375 -----~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 375 -----NEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp -----SCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred -----ecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 22 47788887653 32 12222 235667888999999987774 3333 468889886654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-20 Score=166.12 Aligned_cols=282 Identities=9% Similarity=-0.022 Sum_probs=189.6
Q ss_pred cccceeeeecCCceEEEec----CCeEEEEEecCCceeeEEeecCCCCCce---------EEEEc--CCCCE-EEEEEC-
Q 019847 16 DYYSKVIDWGRNNVLAVAL----GPVLFLWKWENGKVKKLLQVPGEDDYPT---------SVSWS--HDAKT-LAVGYM- 78 (335)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~----~~~i~vw~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~~~~- 78 (335)
...+..++++++.++.+.. ++...||....+.. ...+..|...+. ...|+ |||++ |+.++.
T Consensus 23 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 23 SGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA--EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp CSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC--EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT
T ss_pred CCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC--cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECC
Confidence 4567788899887665554 67899999644332 334445555555 56665 99998 776654
Q ss_pred CCcEEEEeCC--C-ceeEeeecc-----cccceeEeeecCCCCCEEEEeeCC----------CcEEEEecccC-----Ce
Q 019847 79 DSKLQLWDAE--T-SKLVRNLEG-----HHRRVATSSWNHWNGHILTSGSKD----------KSIINHDVRVS-----NN 135 (335)
Q Consensus 79 dg~i~iw~~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~~~d~~~~-----~~ 135 (335)
+..|.++++. . ++ ...+.. |...+..++|+| +++.|++++.+ ..|++||+.+. ..
T Consensus 101 ~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 178 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA 178 (662)
T ss_dssp TCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG
T ss_pred CCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc
Confidence 5667777765 2 43 444554 567889999999 99999888876 58999999862 23
Q ss_pred eeEEee-cCCCCEEEEEeecCCCEEEEEeCCC--------eEEEEEcc-CCCcccceeeccCCCCCeeEEEecCCCCcEE
Q 019847 136 VTSCIK-AHSGEVCGLKWSNEGNLLASGGDDN--------VVRIWERS-KMSSSKSLHRFTDHCGGVKALAWSPHQVNVL 205 (335)
Q Consensus 136 ~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg--------~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 205 (335)
...+. .+...+..++|+|||++|+.++.++ .|++||+. ++...........+...+..+.|+|||+ ++
T Consensus 179 -~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~ 256 (662)
T 3azo_A 179 -VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LI 256 (662)
T ss_dssp -SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EE
T ss_pred -eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EE
Confidence 33344 5567788899999999999887553 79999987 3311122222334567899999999998 66
Q ss_pred EEecCCCCC--eEEEEECCCCceEEEeecCCc---------EeEEEeCCCCceeeeeeeeeeecCCCeEEEE--ECCCCc
Q 019847 206 ATGGGREDG--CIKIWNVQKGTCIHGIDAKAQ---------ICGLEWNRHHKEILSGHGFSASGDGNKLCLW--KYPNMT 272 (335)
Q Consensus 206 ~~~~g~~d~--~i~i~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~--d~~~~~ 272 (335)
+++. .++ .|.+||+.+++.......+.. +..++|+|+++.++++ .. +.+++| |..+++
T Consensus 257 ~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~------~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 257 VATD--RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVH------GK-GAAVLGILDPESGE 327 (662)
T ss_dssp EEEC--TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEE------BS-SSCEEEEEETTTTE
T ss_pred EEEC--CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEE------Ec-CccEEEEEECCCCc
Confidence 6665 667 777778777766544433322 4567888888877765 45 777888 655555
Q ss_pred eeecccCCCCceeEe-EEcCCCCEEEEEeCCCcEEEE--ecCCC
Q 019847 273 KVGELQSSNSRILDL-SQSPDGLTVATAGADETIRFW--EAFGP 313 (335)
Q Consensus 273 ~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~dg~v~iw--~~~~~ 313 (335)
+..+..|...+..+ +++++..++++++.+....+| ++.++
T Consensus 328 -~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 328 -LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp -EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred -EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 56777777777777 555444444555656544555 54444
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-20 Score=156.95 Aligned_cols=265 Identities=9% Similarity=-0.007 Sum_probs=177.6
Q ss_pred EEecCCceeeEEeecCCCCCceE-----EEEcCCCCEEEEEEC-CC--cEEEEeCCCceeEeeecccccceeEeeecCCC
Q 019847 41 WKWENGKVKKLLQVPGEDDYPTS-----VSWSHDAKTLAVGYM-DS--KLQLWDAETSKLVRNLEGHHRRVATSSWNHWN 112 (335)
Q Consensus 41 w~~~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 112 (335)
++..++.. ...+..|...... .+|+|||++|+.++. +| .|.+||+.+++.......+...+..+.|+| +
T Consensus 15 ~~~~~g~~--~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp-d 91 (388)
T 3pe7_A 15 QDASTGAQ--VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP-D 91 (388)
T ss_dssp ECTTTCCE--EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT-T
T ss_pred ecCCCCcc--eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC-C
Confidence 34555543 3344455544444 789999999999887 66 488899999988777776666666789999 9
Q ss_pred CCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEE--eecCCCEEEEEe----------------------CCCeE
Q 019847 113 GHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLK--WSNEGNLLASGG----------------------DDNVV 168 (335)
Q Consensus 113 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~~~~----------------------~dg~i 168 (335)
++.|+.++.++.+++||+.+++. ......+...+.... ++|++++++... .+..|
T Consensus 92 g~~l~~~~~~~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (388)
T 3pe7_A 92 DDALFYVKDGRNLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL 170 (388)
T ss_dssp SSEEEEEETTTEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence 99999999999999999987664 334444555454444 488999887532 34679
Q ss_pred EEEEccCCCcccceeeccCCCCCeeEEEecC-CCCcEEEEecCCC---CCeEEEEECCCCceEEEeecC--CcEeEEEeC
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSP-HQVNVLATGGGRE---DGCIKIWNVQKGTCIHGIDAK--AQICGLEWN 242 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~g~~---d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~ 242 (335)
++||+.++. ...+..+...+..+.|+| +++.++.+..+.. ...|.++|...++........ ..+..+.|+
T Consensus 171 ~~~d~~~g~----~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s 246 (388)
T 3pe7_A 171 MRVDLKTGE----STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWV 246 (388)
T ss_dssp EEEETTTCC----EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEEC
T ss_pred EEEECCCCc----eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceEC
Confidence 999988643 223334556789999999 9987766653111 347888898766544333333 257788999
Q ss_pred CCCceeeeeeeeeeecCCCeEEEEECCCCcee--ecccCCCC---ceeEeEEcCCCCEEEEE---------eCCCcEEEE
Q 019847 243 RHHKEILSGHGFSASGDGNKLCLWKYPNMTKV--GELQSSNS---RILDLSQSPDGLTVATA---------GADETIRFW 308 (335)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~~~~~~---~i~~~~~~~~~~~l~~~---------~~dg~v~iw 308 (335)
|+|+.++.... ..+..+..|++||+.+++.. ..+..+.. ....++|+|||+.|+.. ..+..|++|
T Consensus 247 pdg~~l~~~~~-~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~ 325 (388)
T 3pe7_A 247 PDGSALVYVSY-LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVF 325 (388)
T ss_dssp TTSSCEEEEEE-ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEE
T ss_pred CCCCEEEEEec-CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEE
Confidence 99998865421 00111234999999988743 23333111 12234799999888754 456789999
Q ss_pred ecCCCC
Q 019847 309 EAFGPS 314 (335)
Q Consensus 309 ~~~~~~ 314 (335)
|+.+++
T Consensus 326 d~~~~~ 331 (388)
T 3pe7_A 326 NMKNGT 331 (388)
T ss_dssp ETTTTE
T ss_pred eccCCc
Confidence 998754
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-20 Score=153.28 Aligned_cols=244 Identities=8% Similarity=0.044 Sum_probs=166.4
Q ss_pred cceeeeecCC-c-eEEEecCCeEEEEEec-CCceeeEEeecCCCCCceEEEEcCCCCE--EEEEE-------------CC
Q 019847 18 YSKVIDWGRN-N-VLAVALGPVLFLWKWE-NGKVKKLLQVPGEDDYPTSVSWSHDAKT--LAVGY-------------MD 79 (335)
Q Consensus 18 ~~~~~~~~~~-~-~~~~~~~~~i~vw~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~-------------~d 79 (335)
.+..++|+++ + +++++.+ .|.+|+++ +++.........+. .+.+++|+|+|++ ++++. .+
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG-HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS-SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC-CCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 4567888874 3 5555555 99999997 77765444433222 3667899999995 44543 68
Q ss_pred CcEEEEeCC-CceeEeeec----ccccceeEeeecCCCCCEEEEeeC-CCcEEEEecc-cCCee-eEEee--cCCCCEEE
Q 019847 80 SKLQLWDAE-TSKLVRNLE----GHHRRVATSSWNHWNGHILTSGSK-DKSIINHDVR-VSNNV-TSCIK--AHSGEVCG 149 (335)
Q Consensus 80 g~i~iw~~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~-~~~~~-~~~~~--~~~~~i~~ 149 (335)
|.+.+|++. +++....+. .+...+.+++|+| ++++++++.. ++.|++|++. +++.. ...+. .+...+..
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence 999999997 466544443 2456789999999 8888877654 6799999997 44432 12222 24567999
Q ss_pred EEeecCCCEEEEEeC-CCeEEEEEccC--CCcc---cceeeccC----CCC------CeeEEE-ecCCCCcEEEEecCCC
Q 019847 150 LKWSNEGNLLASGGD-DNVVRIWERSK--MSSS---KSLHRFTD----HCG------GVKALA-WSPHQVNVLATGGGRE 212 (335)
Q Consensus 150 ~~~~~~~~~l~~~~~-dg~i~iwd~~~--~~~~---~~~~~~~~----~~~------~v~~~~-~~~~~~~~~~~~~g~~ 212 (335)
++|+|+|+++++++. ++.|.+|+++. +... ..+..+.. +.. .+..++ |+|+|++++++.. .
T Consensus 198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~--~ 275 (365)
T 1jof_A 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR--A 275 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE--E
T ss_pred eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC--C
Confidence 999999999988775 68999998753 2110 11222221 122 478999 9999987776653 2
Q ss_pred CC-----eEEEEECC-CCceEEE---ee-cCCcEeEEEeCC---CCceeeeeeeeeeecCCCeEEEEECCCC
Q 019847 213 DG-----CIKIWNVQ-KGTCIHG---ID-AKAQICGLEWNR---HHKEILSGHGFSASGDGNKLCLWKYPNM 271 (335)
Q Consensus 213 d~-----~i~i~d~~-~~~~~~~---~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~i~d~~~~ 271 (335)
++ .|.+|++. +++.... .. .......++|+| +|++++++. ..++.|.+|++...
T Consensus 276 ~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~-----~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD-----DQEGWLEIYRWKDE 342 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC-----SSSCEEEEEEEETT
T ss_pred CCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE-----cCCCeEEEEEEchh
Confidence 23 89999996 5665432 32 233567889999 799887762 34689999998665
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=9.1e-20 Score=151.74 Aligned_cols=265 Identities=9% Similarity=0.042 Sum_probs=183.9
Q ss_pred cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC----------CCcEEEEeCCCceeEeeeccc----
Q 019847 34 LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM----------DSKLQLWDAETSKLVRNLEGH---- 99 (335)
Q Consensus 34 ~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~---- 99 (335)
.|+.|.+||..+++....+ +.+..+ .++|+|++++++++.. ++.|.+||..+++.+..+...
T Consensus 29 ~d~~v~v~D~~t~~~~~~i--~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMV--PTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp GGCEEEEEETTTCCEEEEE--ECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred ccCeEEEEECCCCeEEEEe--cCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 3679999999999876543 344443 8999999999998863 567999999999888877632
Q ss_pred --ccceeEeeecCCCCCEEEEeeC--CCcEEEEecccCCeeeEE-eecCCCCEEEEEeecCC-CEEEEEeCCCeEEEEEc
Q 019847 100 --HRRVATSSWNHWNGHILTSGSK--DKSIINHDVRVSNNVTSC-IKAHSGEVCGLKWSNEG-NLLASGGDDNVVRIWER 173 (335)
Q Consensus 100 --~~~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~ 173 (335)
......++++| ++++|+++.. ++.|.+||+.+.+. ... +. .. ....+.+.|++ ..+++.+.||.+.+|++
T Consensus 105 ~~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~-~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~ 180 (361)
T 2oiz_A 105 QGLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDY-VEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINL 180 (361)
T ss_dssp CBCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEE-EEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEE
T ss_pred ccCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcE-EEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEE
Confidence 34577899999 9999988864 68999999987654 333 22 22 22335567754 67888889999999997
Q ss_pred cCCCccc-ce---eeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce--EEEeecC-----------CcE
Q 019847 174 SKMSSSK-SL---HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC--IHGIDAK-----------AQI 236 (335)
Q Consensus 174 ~~~~~~~-~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~--~~~~~~~-----------~~~ 236 (335)
....... .. ..+.....++ .+.++|++..++... .++.+.++|+..... ...+... ...
T Consensus 181 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~---~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~ 256 (361)
T 2oiz_A 181 GEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVS---YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGY 256 (361)
T ss_dssp CTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEB---TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCS
T ss_pred CCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEe---CCCeEEEEEecCCCceecccccccCccccccccccCCe
Confidence 6422111 01 1122222222 233456666665554 688999999875542 2222211 111
Q ss_pred eEEEeCCCCceeeeeeeeee-----ecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 237 CGLEWNRHHKEILSGHGFSA-----SGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
..++++|+++.+++...... ....+.|.+||+.+++.+.++..+. +.+++|+|||++|++++. +.|.+||..
T Consensus 257 ~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 257 NLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDIS 333 (361)
T ss_dssp SCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECS
T ss_pred eEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECC
Confidence 23789999888776421000 0014589999999999999998877 899999999999998887 999999999
Q ss_pred CC
Q 019847 312 GP 313 (335)
Q Consensus 312 ~~ 313 (335)
+.
T Consensus 334 t~ 335 (361)
T 2oiz_A 334 QP 335 (361)
T ss_dssp SS
T ss_pred CC
Confidence 87
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-19 Score=148.15 Aligned_cols=262 Identities=9% Similarity=0.078 Sum_probs=186.9
Q ss_pred eeeecCC--ceEEEe----------cCCeEEEEEecCCceeeEEeecC----CCCCceEEEEcCCCCEEEEEEC--CCcE
Q 019847 21 VIDWGRN--NVLAVA----------LGPVLFLWKWENGKVKKLLQVPG----EDDYPTSVSWSHDAKTLAVGYM--DSKL 82 (335)
Q Consensus 21 ~~~~~~~--~~~~~~----------~~~~i~vw~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~--dg~i 82 (335)
.++++++ .++++. .++.|.+||..+.+....+.+.. +......++++|+|++|+++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 6788874 344443 25679999999888776666532 2356788999999999998874 5799
Q ss_pred EEEeCCCceeEee-ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE------eecCCCCEEEEEeecC
Q 019847 83 QLWDAETSKLVRN-LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC------IKAHSGEVCGLKWSNE 155 (335)
Q Consensus 83 ~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~------~~~~~~~i~~~~~~~~ 155 (335)
.+||+.+++.+.. +.. .. ...+.+.|.....+++.+.||.+.+|+.......... +.....++ .+.++++
T Consensus 134 ~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~ 210 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALD 210 (361)
T ss_dssp EEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEEC
T ss_pred EEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEeccc
Confidence 9999999998887 553 22 2224566745578889999999999998753433311 11122222 3344677
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcccceeeccC----------CCCCeeEEEecCCCCcEEEEec--CC------CCCeEE
Q 019847 156 GNLLASGGDDNVVRIWERSKMSSSKSLHRFTD----------HCGGVKALAWSPHQVNVLATGG--GR------EDGCIK 217 (335)
Q Consensus 156 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~--g~------~d~~i~ 217 (335)
+..++..+.++.+.++|+..... .....+.- .......++++|+++.++++.. +. ..+.|.
T Consensus 211 g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~ 289 (361)
T 2oiz_A 211 KDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIW 289 (361)
T ss_dssp SSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEE
T ss_pred CCEEEEEeCCCeEEEEEecCCCc-eecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEE
Confidence 77888888899999999864321 11111100 0111223789999888877642 00 135899
Q ss_pred EEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC--ceeecccCCCCceeEeEEcCCCC
Q 019847 218 IWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM--TKVGELQSSNSRILDLSQSPDGL 294 (335)
Q Consensus 218 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~ 294 (335)
+||+.+++.+..+..+. +..++|+|+|++++++ +. +.|.+||..++ +.+.++..+......++++|+|+
T Consensus 290 viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~------n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 290 VMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTL------DG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEETTTTEEEEEEECTT-CCEEEEETTTTEEEEE------CS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEECCCCcEEEEEecCC-eeEEEECCCCCEEEEe------CC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999999999888 9999999999988765 33 99999999999 99988877777788999999985
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-19 Score=148.38 Aligned_cols=242 Identities=11% Similarity=0.101 Sum_probs=164.1
Q ss_pred CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC---C--cEEEEeCCCceeEeeecccccceeEeeec
Q 019847 35 GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD---S--KLQLWDAETSKLVRNLEGHHRRVATSSWN 109 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~ 109 (335)
++.|.+||+++++...+ ..+..++|+|||++|+..+.+ + .|.+|++.+++....... .. +..+.|+
T Consensus 42 ~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~ws 112 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWN 112 (347)
T ss_dssp EEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEEC
T ss_pred cceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeEC
Confidence 56899999998875433 457899999999999988754 3 488889888876554443 34 9999999
Q ss_pred CCCCCEEEEeeCC---------------------------CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEE
Q 019847 110 HWNGHILTSGSKD---------------------------KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASG 162 (335)
Q Consensus 110 ~~~~~~l~~~~~d---------------------------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (335)
| +++.|+.++.+ ..|.+||+.+++. ...+.. . .+..+.|+|++ +++++
T Consensus 113 p-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg-~~~~~ 187 (347)
T 2gop_A 113 E-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK-IVVNV 187 (347)
T ss_dssp T-TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE-EEEEE
T ss_pred C-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe-EEEEE
Confidence 9 88888777632 5789999976543 122333 3 77889999999 77777
Q ss_pred eCCC-------eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCC-----CCCeEEEEECCCCceEEEe
Q 019847 163 GDDN-------VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGR-----EDGCIKIWNVQKGTCIHGI 230 (335)
Q Consensus 163 ~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-----~d~~i~i~d~~~~~~~~~~ 230 (335)
..++ ...+|.+..+ . ...+..+ ..+..+ +|+|+.++..+... ....|.+|| +++.....
T Consensus 188 ~~~~~~~~~~~~~~l~~~d~~-~---~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 188 PHREIIPQYFKFWDIYIWEDG-K---EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp ECCCSSCCSSCCEEEEEEETT-E---EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS
T ss_pred ecccccccccccccEEEeCCC-c---eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecc
Confidence 6542 3455554422 2 2222223 444444 99998887766311 124788888 55544333
Q ss_pred ec-CCcEeE-EEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcE-EE
Q 019847 231 DA-KAQICG-LEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETI-RF 307 (335)
Q Consensus 231 ~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v-~i 307 (335)
.. ...+.. +.|+ ++ .++++ +.++.+++| +.+++.. .+..+...|.+++|+| .++++++.++.. .+
T Consensus 259 ~~~~~~~~~~~~~s-dg-~~~~~------~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l 326 (347)
T 2gop_A 259 DEVDRGVGQAKIKD-GK-VYFTL------FEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLREL 326 (347)
T ss_dssp TTCCSEEEEEEEET-TE-EEEEE------EETTEEEEE-EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEE
T ss_pred ccCCcccCCccEEc-Cc-EEEEE------ecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHh
Confidence 33 346775 8999 77 55554 568899999 8765553 3344577899999999 677777777765 78
Q ss_pred EecC
Q 019847 308 WEAF 311 (335)
Q Consensus 308 w~~~ 311 (335)
|.+.
T Consensus 327 ~~~~ 330 (347)
T 2gop_A 327 FTWD 330 (347)
T ss_dssp EEES
T ss_pred eEeC
Confidence 8776
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.5e-19 Score=145.29 Aligned_cols=264 Identities=9% Similarity=0.081 Sum_probs=182.9
Q ss_pred ceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 19 SKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 19 ~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
+.++.|+++ .++..+.++.++.|. ++. ...+..+...+.+++|+|++++++++..++.|.+||.++++.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTIT---AEP--WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEEE---CEE--EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cceeeecCCccceeEEeecccCcccc---cce--eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 456777764 344446778888882 222 3344456677899999999997788888899999999888766544
Q ss_pred cccccceeEeeecCCCCCEEEEeeCC----CcEEEEecccCCeeeEEee--cCCCCEEEEEeecCCCEEEEEeC------
Q 019847 97 EGHHRRVATSSWNHWNGHILTSGSKD----KSIINHDVRVSNNVTSCIK--AHSGEVCGLKWSNEGNLLASGGD------ 164 (335)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~------ 164 (335)
..+...+.++++++ +++++++...+ +.|.+||..+... ...+. .+...+..++++|+++++++...
T Consensus 83 ~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 83 VSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNL-QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp ECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSC-EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred eCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEE-EEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 44667899999999 88888877666 6899999875543 22222 24467899999999987776653
Q ss_pred CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC-CceEEEe--------ecCCc
Q 019847 165 DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK-GTCIHGI--------DAKAQ 235 (335)
Q Consensus 165 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~--------~~~~~ 235 (335)
.+.|..+|..... +..+......+..++|+|++..++++.. .++.|.+||+.+ +..+..+ .....
T Consensus 161 ~~~l~~~~~~~~~----~~~~~~~~~~~~~i~~~~dg~~l~v~~~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~ 234 (333)
T 2dg1_A 161 LGGVYYVSPDFRT----VTPIIQNISVANGIALSTDEKVLWVTET--TANRLHRIALEDDGVTIQPFGATIPYYFTGHEG 234 (333)
T ss_dssp CEEEEEECTTSCC----EEEEEEEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSE
T ss_pred CceEEEEeCCCCE----EEEeecCCCcccceEECCCCCEEEEEeC--CCCeEEEEEecCCCcCcccccceEEEecCCCCC
Confidence 2456666644321 1222222345788999999987777654 678999999964 3332211 11236
Q ss_pred EeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCC------ceeEeEEcCCCCEEEEEeCC
Q 019847 236 ICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNS------RILDLSQSPDGLTVATAGAD 302 (335)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~------~i~~~~~~~~~~~l~~~~~d 302 (335)
+..++++++|...++. ..++.|.+||. +++.+..+..+.. .+.+++|+||++.|+.++.+
T Consensus 235 ~~~i~~d~~G~l~v~~------~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 235 PDSCCIDSDDNLYVAM------YGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEEEEBTTCCEEEEE------ETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCceEECCCCCEEEEE------cCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 7889999999876654 34789999998 5666666544432 58899999998777666555
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-18 Score=156.38 Aligned_cols=247 Identities=9% Similarity=0.043 Sum_probs=175.1
Q ss_pred CCCCceEEEEcCCCCEEEEEECCC-----cEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCc-------
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYMDS-----KLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKS------- 124 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~------- 124 (335)
|...+..++|||||++||.+..++ .|++||+.+++....... ...+..++|+| +++.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECT-TSSEEEEEECCCCSSCCSSS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEe-CCCEEEEEEECCcccccccc
Confidence 444688999999999999876543 899999999987764332 23377899999 9998888887765
Q ss_pred ---------EEEEecccCCee-eEEe--ecCCCCEEEEEeecCCCEEEEEeC-----CCeEEEEEccC------CCcccc
Q 019847 125 ---------IINHDVRVSNNV-TSCI--KAHSGEVCGLKWSNEGNLLASGGD-----DNVVRIWERSK------MSSSKS 181 (335)
Q Consensus 125 ---------i~~~d~~~~~~~-~~~~--~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~~~~~ 181 (335)
|++|++.++... .... ..+...+..+.|+|||++|+.++. +..|++||+.. +. ..
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~--~~ 278 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI--LK 278 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS--CC
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc--cc
Confidence 999999765522 1222 224556889999999999988775 56899999875 22 12
Q ss_pred eeeccCCCCCeeEEEecCCCCcEEEEecC-CCCCeEEEEECCCCce---EEEeecCC--cEeEEEeCCCCceeeeeeeee
Q 019847 182 LHRFTDHCGGVKALAWSPHQVNVLATGGG-REDGCIKIWNVQKGTC---IHGIDAKA--QICGLEWNRHHKEILSGHGFS 255 (335)
Q Consensus 182 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~g-~~d~~i~i~d~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 255 (335)
...+..+...+.. .|+|++..++..+.. ..++.|.+||+.++.. ...+.+.. .+..+.|++++..+++.
T Consensus 279 ~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~---- 353 (710)
T 2xdw_A 279 WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY---- 353 (710)
T ss_dssp CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE----
T ss_pred eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE----
Confidence 3344445555544 488898887777641 1235799999987742 22233322 57788998777666655
Q ss_pred eecCCC--eEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEE-e---CCCcEEEEecCCCC
Q 019847 256 ASGDGN--KLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATA-G---ADETIRFWEAFGPS 314 (335)
Q Consensus 256 ~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~---~dg~v~iw~~~~~~ 314 (335)
..++ .|.+|++.+++.+..+..+.+.+..++++|++..++.. + ..+.++.||+.+++
T Consensus 354 --~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 354 --LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp --EETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred --EECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 3455 56777887788777777777788999999998766533 2 35789999998765
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-19 Score=159.18 Aligned_cols=249 Identities=10% Similarity=-0.002 Sum_probs=171.6
Q ss_pred ecCCCCCceEEEEcCCCCEEEEE--ECCCcEEEEeCCCceeEeeeccccccee---------Eeeec--CCCCCE-EEEe
Q 019847 54 VPGEDDYPTSVSWSHDAKTLAVG--YMDSKLQLWDAETSKLVRNLEGHHRRVA---------TSSWN--HWNGHI-LTSG 119 (335)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~~-l~~~ 119 (335)
+.+|...+..++|++++-+++.. +.++...||....+.....+..+...+. ...|+ | +++. |+.+
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP-Dg~~~la~~ 97 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRP-AGGPLLVFT 97 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCS-SSSCEEEEE
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeec-CCCeEEEEE
Confidence 34678889999999887666666 4578899998655555666766666665 56666 7 7776 6555
Q ss_pred e-CCCcEEEEecc--cCCeeeEEeec-----CCCCEEEEEeecCCCEEEEEeCC----------CeEEEEEccCCC--cc
Q 019847 120 S-KDKSIINHDVR--VSNNVTSCIKA-----HSGEVCGLKWSNEGNLLASGGDD----------NVVRIWERSKMS--SS 179 (335)
Q Consensus 120 ~-~dg~i~~~d~~--~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~--~~ 179 (335)
+ .+..|.++++. .... ...+.. |...+..++|+|||+.|++++.+ ..|++||+.... ..
T Consensus 98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred ECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 4 35667777764 2022 233444 56678999999999999998877 589999987620 00
Q ss_pred cceeecc-CCCCCeeEEEecCCCCcEEEEecCC-----CCCeEEEEECC-CC---ceEEEeec-CCcEeEEEeCCCCcee
Q 019847 180 KSLHRFT-DHCGGVKALAWSPHQVNVLATGGGR-----EDGCIKIWNVQ-KG---TCIHGIDA-KAQICGLEWNRHHKEI 248 (335)
Q Consensus 180 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~g~-----~d~~i~i~d~~-~~---~~~~~~~~-~~~~~~~~~~~~~~~~ 248 (335)
.....+. .+...+..++|+|||+.++.+.... ....|++||+. ++ +....... ...+..+.|+|+|+.+
T Consensus 177 ~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~ 256 (662)
T 3azo_A 177 SAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLI 256 (662)
T ss_dssp GGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEE
T ss_pred CceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEE
Confidence 1233344 4556788899999998877665300 01489999998 56 44333343 4678999999999955
Q ss_pred eeeeeeeeecCCC--eEEEEECCCCceeecccCCCCc--------eeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 249 LSGHGFSASGDGN--KLCLWKYPNMTKVGELQSSNSR--------ILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 249 ~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
+++ ..++ .|.+||..+++.......+... +..++|+|+++++++++. +.+++|.++
T Consensus 257 ~~~------~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 257 VAT------DRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp EEE------CTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred EEE------CCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 544 4466 6777787677655444433222 567899999999999998 999999554
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-18 Score=153.74 Aligned_cols=285 Identities=11% Similarity=0.096 Sum_probs=178.9
Q ss_pred eeecCC-c-eEEEecC---------CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc
Q 019847 22 IDWGRN-N-VLAVALG---------PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 22 ~~~~~~-~-~~~~~~~---------~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
++|+++ + ++.++.+ +.+.+||+.+++.. .+..|...+...+|||||+.||.+. ++.|++|++.++
T Consensus 67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~---~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~ 142 (740)
T 4a5s_A 67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI---TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL 142 (740)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC---CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE---EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCC
Confidence 677874 3 4444443 67789999999854 3556777899999999999999985 789999999888
Q ss_pred eeEeeec-ccccce-----------------eEeeecCCCCCEEEEeeCCC-----------------------------
Q 019847 91 KLVRNLE-GHHRRV-----------------ATSSWNHWNGHILTSGSKDK----------------------------- 123 (335)
Q Consensus 91 ~~~~~~~-~~~~~v-----------------~~~~~~~~~~~~l~~~~~dg----------------------------- 123 (335)
+..+... ++...+ ..+.|+| +++.|+.++.|.
T Consensus 143 ~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~ 221 (740)
T 4a5s_A 143 PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKA 221 (740)
T ss_dssp CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBT
T ss_pred ceEEEcCCCCccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCC
Confidence 7554322 222212 3588999 999888875321
Q ss_pred -------cEEEEeccc---CC--eeeEEee-----cCCCCEEEEEeecCCCEEEEEeC----CCeEEEEEccCCC----c
Q 019847 124 -------SIINHDVRV---SN--NVTSCIK-----AHSGEVCGLKWSNEGNLLASGGD----DNVVRIWERSKMS----S 178 (335)
Q Consensus 124 -------~i~~~d~~~---~~--~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~----~ 178 (335)
.|++||+.+ +. ....... +|...+..++|+||++.++.... +..|++||+.++. .
T Consensus 222 G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~ 301 (740)
T 4a5s_A 222 GAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNC 301 (740)
T ss_dssp TSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEE
T ss_pred cCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccce
Confidence 478889886 52 2222221 37778999999999997766543 2379999988754 1
Q ss_pred ccceeec--cCCCCCee-----EEEecCCCCcEE-EEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeee
Q 019847 179 SKSLHRF--TDHCGGVK-----ALAWSPHQVNVL-ATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS 250 (335)
Q Consensus 179 ~~~~~~~--~~~~~~v~-----~~~~~~~~~~~~-~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (335)
.. ...+ ..+...+. ...|+|||+.++ ..........|++||+.+++..........+..+.. ++++.++.
T Consensus 302 ~~-~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f 379 (740)
T 4a5s_A 302 LV-ARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYY 379 (740)
T ss_dssp CG-GGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEE
T ss_pred eE-EEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEE
Confidence 11 1111 33444443 688999998776 443211225788999987766554444445555442 34655543
Q ss_pred eeee-eeecCCCeEEEEECCCCceeeccc----CCCCceeEeEEcCCCCEEEEEeCC---CcEEEEecCCC
Q 019847 251 GHGF-SASGDGNKLCLWKYPNMTKVGELQ----SSNSRILDLSQSPDGLTVATAGAD---ETIRFWEAFGP 313 (335)
Q Consensus 251 ~~~~-~~~~~~~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~ 313 (335)
...- .-......|...++..+.....+. ........+.|+|++++++..... ..+.+++...+
T Consensus 380 ~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 380 ISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp EESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred EEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence 2100 000112355555665544332333 223567889999999987655433 35777776654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-17 Score=133.61 Aligned_cols=243 Identities=8% Similarity=-0.008 Sum_probs=169.6
Q ss_pred CceEEEEcCCCCEEE-EEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE
Q 019847 60 YPTSVSWSHDAKTLA-VGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS 138 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 138 (335)
.+.+++++++|++++ +...++.|.+|+..+.........+...+..+++.+ +++++++.. ++.|.+||...... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~-~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQ-TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCC-EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceE-ee
Confidence 678999999998666 446788999999766543332223335688899998 778666655 88999999874432 22
Q ss_pred EeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEE
Q 019847 139 CIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKI 218 (335)
Q Consensus 139 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i 218 (335)
........+..++++++++++++...++.|.+|+..... ...........+..++++|++. ++++.. .++.|.+
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~~i~~ 175 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT---QTVLPFTGLNDPDGVAVDNSGN-VYVTDT--DNNRVVK 175 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS---CEECCCCSCCSCCCEEECTTCC-EEEEEG--GGTEEEE
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce---eEeeccccCCCceeEEEeCCCC-EEEEEC--CCCEEEE
Confidence 222233578999999999988877778899999754321 1211222334578899999986 666554 5789999
Q ss_pred EECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEE
Q 019847 219 WNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVA 297 (335)
Q Consensus 219 ~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 297 (335)
||............. ..+..++++++|...++. ..++.|.+|+............+...+.+++++++|++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~------~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 176 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTE------HNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYV 249 (270)
T ss_dssp ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEE------TTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEE
T ss_pred EecCCCceEeecccCCCCceEEEECCCCCEEEEE------CCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEE
Confidence 998876654332222 568899999999655544 4578999999876554333323345689999999999888
Q ss_pred EEeCCCcEEEEecCCCCCCC
Q 019847 298 TAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 298 ~~~~dg~v~iw~~~~~~~~~ 317 (335)
+...++.|+++++...+..+
T Consensus 250 ~~~~~~~v~~~~~~~~~~~~ 269 (270)
T 1rwi_B 250 ADRGNDRVVKLTSLEHHHHH 269 (270)
T ss_dssp EEGGGTEEEEECCCGGGSCC
T ss_pred EECCCCEEEEEcCCCccccC
Confidence 88899999999988765543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-17 Score=134.85 Aligned_cols=233 Identities=12% Similarity=0.109 Sum_probs=168.5
Q ss_pred CCCCCceEEEEcCCCC-EEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC
Q 019847 56 GEDDYPTSVSWSHDAK-TLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN 134 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 134 (335)
.+.....+++|+|+++ +++++..++.|..|+..++ ...+..+...+.++++++ +++++++...++.|.+||..++.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGE 101 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCC
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCc
Confidence 3455678999999998 7778888999999999877 556666777899999999 88888877778899999987555
Q ss_pred eeeEEeec----CCCCEEEEEeecCCCEEEEE----e-------------CCCeEEEEEccCCCcccceeeccCCCCCee
Q 019847 135 NVTSCIKA----HSGEVCGLKWSNEGNLLASG----G-------------DDNVVRIWERSKMSSSKSLHRFTDHCGGVK 193 (335)
Q Consensus 135 ~~~~~~~~----~~~~i~~~~~~~~~~~l~~~----~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 193 (335)
. ...... ....+..++++|+|+++++. + ..+.|..++.. . .+..+..+.....
T Consensus 102 ~-~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g----~~~~~~~~~~~~~ 175 (296)
T 3e5z_A 102 W-ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G----TLSAPIRDRVKPN 175 (296)
T ss_dssp E-EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S----CEEEEECCCSSEE
T ss_pred E-EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C----CEEEeecCCCCCc
Confidence 3 222111 12345679999999988873 2 13456656543 1 2333344556678
Q ss_pred EEEecCCCCcEEEEecCCCCCeEEEEECC-CCce---EEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEEC
Q 019847 194 ALAWSPHQVNVLATGGGREDGCIKIWNVQ-KGTC---IHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268 (335)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 268 (335)
.++|+|+++.+ ++.. .++.|++||+. +++. ...+. ....+..++++++|+..++. ++.|.+||.
T Consensus 176 gi~~s~dg~~l-v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--------~~~v~~~~~ 244 (296)
T 3e5z_A 176 GLAFLPSGNLL-VSDT--GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--------GDGVHVLTP 244 (296)
T ss_dssp EEEECTTSCEE-EEET--TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--------TTEEEEECT
T ss_pred cEEECCCCCEE-EEeC--CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--------CCeEEEECC
Confidence 99999999877 6655 68999999987 5554 22331 23356789999999866543 789999998
Q ss_pred CCCceeecccCCCCceeEeEE-cCCCCEEEEEeCCCcEEEEecCCC
Q 019847 269 PNMTKVGELQSSNSRILDLSQ-SPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
. ++.+..+..+.. +++++| +|+++.|++++.++ +|.+...
T Consensus 245 ~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~~ 285 (296)
T 3e5z_A 245 D-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE---FWSIETN 285 (296)
T ss_dssp T-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE---EEEEECS
T ss_pred C-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe---EEEEEcc
Confidence 6 777777777777 899999 58998888888763 5544443
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-16 Score=137.96 Aligned_cols=269 Identities=9% Similarity=0.031 Sum_probs=193.5
Q ss_pred EEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC--CceeEeeecccccceeEeee
Q 019847 31 AVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE--TSKLVRNLEGHHRRVATSSW 108 (335)
Q Consensus 31 ~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~ 108 (335)
+...++.|.++|..+++....+.. ...+..+.|+|||+++++++.|+.|.+||+. +++.+..+... .....++|
T Consensus 172 ~~~~~~~V~viD~~t~~v~~~i~~---g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~ 247 (567)
T 1qks_A 172 TLRDAGQIALIDGSTYEIKTVLDT---GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIET 247 (567)
T ss_dssp EETTTTEEEEEETTTCCEEEEEEC---SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEE
T ss_pred EeCCCCeEEEEECCCCeEEEEEeC---CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEE
Confidence 334678999999999988765553 3356799999999999999999999999996 88888877753 45678999
Q ss_pred c----CCCCCEEEEee-CCCcEEEEecccCCeeeEEeec---------C-CCCEEEEEeecCCCEE-EEEeCCCeEEEEE
Q 019847 109 N----HWNGHILTSGS-KDKSIINHDVRVSNNVTSCIKA---------H-SGEVCGLKWSNEGNLL-ASGGDDNVVRIWE 172 (335)
Q Consensus 109 ~----~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~---------~-~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd 172 (335)
+ | ++++++++. .++.+.++|..+.+.+...... | ...+..+..++++..+ +....+|.|.++|
T Consensus 248 s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd 326 (567)
T 1qks_A 248 SKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 326 (567)
T ss_dssp CCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred ccccCC-CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEe
Confidence 9 5 787776665 5589999998876654332211 1 2267888888876554 4445669999999
Q ss_pred ccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcE---eEEE-eCCCCce
Q 019847 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQI---CGLE-WNRHHKE 247 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~---~~~~-~~~~~~~ 247 (335)
........ +..+. .......+.|+|++++++++.. .++.|.++|+.+++.+..+.. .... .... ++|++..
T Consensus 327 ~~~~~~~~-v~~i~-~~~~~~d~~~~pdgr~~~va~~--~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~ 402 (567)
T 1qks_A 327 YTDLNNLK-TTEIS-AERFLHDGGLDGSHRYFITAAN--ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGP 402 (567)
T ss_dssp TTCSSEEE-EEEEE-CCSSEEEEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEE
T ss_pred cCCCccce-eeeee-ccccccCceECCCCCEEEEEeC--CCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCc
Confidence 87543211 22221 2345678899999999888876 689999999999998877765 2211 1223 5777554
Q ss_pred ee-eeeeeeeecCCCeEEEEECCC-------CceeecccCCCCceeEeEEcCCCCEEEEEeC-------CCcEEEEecCC
Q 019847 248 IL-SGHGFSASGDGNKLCLWKYPN-------MTKVGELQSSNSRILDLSQSPDGLTVATAGA-------DETIRFWEAFG 312 (335)
Q Consensus 248 ~~-~~~~~~~~~~~~~i~i~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------dg~v~iw~~~~ 312 (335)
+. ++. -.++.|.++|..+ .+.++++......-..+..+|++++|.+... .+.|.++|+.+
T Consensus 403 v~~t~~-----~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 403 VWATSH-----MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKA 477 (567)
T ss_dssp EEEEEB-----SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred EEEeCC-----CCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence 43 321 2468999999987 5677777655444455788999999988763 35999999987
Q ss_pred C
Q 019847 313 P 313 (335)
Q Consensus 313 ~ 313 (335)
.
T Consensus 478 ~ 478 (567)
T 1qks_A 478 M 478 (567)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-17 Score=134.93 Aligned_cols=259 Identities=10% Similarity=-0.012 Sum_probs=178.1
Q ss_pred CCeEEEEEecCCceeeEEee----cCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecC
Q 019847 35 GPVLFLWKWENGKVKKLLQV----PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNH 110 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~ 110 (335)
++.|.++|.++++....+.. .........+.+. +++..++...++.|.+||..+++.+..+. .......+++++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~ 93 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS 93 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC
Confidence 68999999999886543211 0122445777774 34455555567899999999999988885 446788999988
Q ss_pred CCCCEEEEeeCCCcEEEEecccCCeeeEEeecCC-----CCEEEEEeecCCCEEEEEe-CCCeEEEEEccCCCcccceee
Q 019847 111 WNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHS-----GEVCGLKWSNEGNLLASGG-DDNVVRIWERSKMSSSKSLHR 184 (335)
Q Consensus 111 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 184 (335)
++.++++...++.|.+||..+.+. ...+.... .....+++ .+++++++.. .++.|.++|+.+... +..
T Consensus 94 -~g~lyv~~~~~~~v~~iD~~t~~~-~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~---~~~ 167 (328)
T 3dsm_A 94 -DEKAYVTQIWDYRIFIINPKTYEI-TGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKV---VDE 167 (328)
T ss_dssp -TTEEEEEEBSCSEEEEEETTTTEE-EEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEE---EEE
T ss_pred -CCeEEEEECCCCeEEEEECCCCeE-EEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeE---EEE
Confidence 675555554899999999986654 33333222 14456677 3444444433 488999999876433 333
Q ss_pred ccCCCCCeeEEEecCCCCcEEEEecCCC--------CCeEEEEECCCCceEEEeec--CCcEeEEEeCCCCceeeeeeee
Q 019847 185 FTDHCGGVKALAWSPHQVNVLATGGGRE--------DGCIKIWNVQKGTCIHGIDA--KAQICGLEWNRHHKEILSGHGF 254 (335)
Q Consensus 185 ~~~~~~~v~~~~~~~~~~~~~~~~~g~~--------d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 254 (335)
+.. ......+.++|+++ +++++.+.. .+.|.++|..+++....+.. ......++++|+++.+++.
T Consensus 168 i~~-g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~--- 242 (328)
T 3dsm_A 168 LTI-GIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI--- 242 (328)
T ss_dssp EEC-SSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEE---
T ss_pred EEc-CCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEE---
Confidence 332 23456789999986 555543110 27899999999988877765 3468999999999988876
Q ss_pred eeecCCCeEEEEECCCCceeec--ccCCCCceeEeEEcC-CCCEEEEE----eCCCcEEEEecC
Q 019847 255 SASGDGNKLCLWKYPNMTKVGE--LQSSNSRILDLSQSP-DGLTVATA----GADETIRFWEAF 311 (335)
Q Consensus 255 ~~~~~~~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~-~~~~l~~~----~~dg~v~iw~~~ 311 (335)
++.|.+||..+++.... +.........++++| ++.++++. ..++.|.+||..
T Consensus 243 -----~~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 243 -----NNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp -----SSSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred -----ccEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 33899999988776422 222245688999999 55656665 578999999988
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.2e-17 Score=129.74 Aligned_cols=236 Identities=12% Similarity=0.217 Sum_probs=166.9
Q ss_pred cceeeeecCC-ceEEE-ecCCeEEEEEecCCceeeEEee----cCCCCCceEEEEc-CCCCEEEEEEC-CCcEEEEeCCC
Q 019847 18 YSKVIDWGRN-NVLAV-ALGPVLFLWKWENGKVKKLLQV----PGEDDYPTSVSWS-HDAKTLAVGYM-DSKLQLWDAET 89 (335)
Q Consensus 18 ~~~~~~~~~~-~~~~~-~~~~~i~vw~~~~~~~~~~~~~----~~~~~~v~~~~~~-~~~~~l~~~~~-dg~i~iw~~~~ 89 (335)
.+..++++++ .++++ ..++.|.+||.+ ++....+.. .++...+..+++. ++++++++... ++.|.+|| .+
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~ 108 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QY 108 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TT
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CC
Confidence 4667888764 55555 467899999987 444333322 1344578999994 67766666543 88999999 56
Q ss_pred ceeEeeecc-cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee--cCCCCEEEEEeecCCCEEEEEeCCC
Q 019847 90 SKLVRNLEG-HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK--AHSGEVCGLKWSNEGNLLASGGDDN 166 (335)
Q Consensus 90 ~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg 166 (335)
++.+..+.. +...+..+++.+ +++++++...++.|.+||.. +.. ...+. .+...+..++++|+++++++...++
T Consensus 109 g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 185 (286)
T 1q7f_A 109 GQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNV-LHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH 185 (286)
T ss_dssp SCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCE-EEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred CcEEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCE-EEEeCCCCccCCcEEEEECCCCCEEEEECCCC
Confidence 777666643 345788999999 88888888888999999965 333 33332 3446789999999999888877899
Q ss_pred eEEEEEccCCCcccceeeccC--CCCCeeEEEecCCCCcEEEEecCCCCC-eEEEEECCCCceEEEeecCC---cEeEEE
Q 019847 167 VVRIWERSKMSSSKSLHRFTD--HCGGVKALAWSPHQVNVLATGGGREDG-CIKIWNVQKGTCIHGIDAKA---QICGLE 240 (335)
Q Consensus 167 ~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~g~~d~-~i~i~d~~~~~~~~~~~~~~---~~~~~~ 240 (335)
.|++||... ..+..+.. +...+..++++|++. ++++.. .++ .|.+||. +++.+..+..+. .+..++
T Consensus 186 ~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~--~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~ 257 (286)
T 1q7f_A 186 CVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGE-ILIADN--HNNFNLTIFTQ-DGQLISALESKVKHAQCFDVA 257 (286)
T ss_dssp EEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCC-EEEEEC--SSSCEEEEECT-TSCEEEEEEESSCCSCEEEEE
T ss_pred EEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCC-EEEEeC--CCCEEEEEECC-CCCEEEEEcccCCCCcceeEE
Confidence 999999643 23333332 235688999999985 555553 465 9999995 566766665432 377899
Q ss_pred eCCCCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
++|+|+.+++. .++.|++|++....+
T Consensus 258 ~~~~g~l~vs~-------~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 258 LMDDGSVVLAS-------KDYRLYIYRYVQLAP 283 (286)
T ss_dssp EETTTEEEEEE-------TTTEEEEEECSCCCC
T ss_pred ECCCCcEEEEC-------CCCeEEEEEcccccc
Confidence 99999866543 489999999866544
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-18 Score=147.12 Aligned_cols=263 Identities=9% Similarity=-0.005 Sum_probs=170.3
Q ss_pred EEEecCCceeeEEeecCCC-----CCceEEEEcCCCCEEEEEECC---CcEEEEeCCCceeEeeecccccceeEeeecCC
Q 019847 40 LWKWENGKVKKLLQVPGED-----DYPTSVSWSHDAKTLAVGYMD---SKLQLWDAETSKLVRNLEGHHRRVATSSWNHW 111 (335)
Q Consensus 40 vw~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~ 111 (335)
..|..+++... .+..+. ..+..++|+|+|++|+..... ..|.+||+.+++.......+......+.|+|
T Consensus 14 ~~d~~~g~~~~--~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp- 90 (396)
T 3c5m_A 14 FVDSDTQVKVT--RLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST- 90 (396)
T ss_dssp EECTTTCCEEE--ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT-
T ss_pred eecCCCCcceE--EEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC-
Confidence 34566665433 333332 237788999999998887543 4788899988876554433333333478999
Q ss_pred CCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEE-------------------EEeecCCCEEEEE-----eCCCe
Q 019847 112 NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCG-------------------LKWSNEGNLLASG-----GDDNV 167 (335)
Q Consensus 112 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~l~~~-----~~dg~ 167 (335)
+++.|+.++.++.|++||+.+++. ......+...... +.|+|+++.++.. ..+..
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~ 169 (396)
T 3c5m_A 91 DERAFFYVKNELNLMKVDLETLEE-QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCR 169 (396)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEE
T ss_pred CCCEEEEEEcCCcEEEEECCCCCc-EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcce
Confidence 999999999999999999986553 3333333332222 3457777766554 35668
Q ss_pred EEEEEccCCCcccceeeccCCCCCeeEEEecC-CCCcEEEEecCCCC----CeEEEEECCCCceEEEeec--CCcEeEEE
Q 019847 168 VRIWERSKMSSSKSLHRFTDHCGGVKALAWSP-HQVNVLATGGGRED----GCIKIWNVQKGTCIHGIDA--KAQICGLE 240 (335)
Q Consensus 168 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~g~~d----~~i~i~d~~~~~~~~~~~~--~~~~~~~~ 240 (335)
|++||+..+.. ..+..+...+..+.|+| ++..++.+..+ .. ..|.+||+..++....... ...+..+.
T Consensus 170 l~~~d~~~g~~----~~~~~~~~~~~~~~~sp~dg~~l~~~~~~-~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 170 LIKVDIETGEL----EVIHQDTAWLGHPIYRPFDDSTVGFCHEG-PHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEF 244 (396)
T ss_dssp EEEEETTTCCE----EEEEEESSCEEEEEEETTEEEEEEEEECS-CSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEE
T ss_pred EEEEECCCCcE----EeeccCCcccccceECCCCCCEEEEEecC-CCCCCCceEEEEECCCCceeEeeccCCCccccceE
Confidence 99999876432 22223566788999999 77666665421 22 5799999876654333332 22577899
Q ss_pred eCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcC-CCCEEEEEe----------------CCC
Q 019847 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSP-DGLTVATAG----------------ADE 303 (335)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~----------------~dg 303 (335)
|+|+|+.++.... ..+...+.|++||+.+++....... .. .. +.|+| ||++++.++ .++
T Consensus 245 ~spdg~~l~~~~~-~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~ 320 (396)
T 3c5m_A 245 WIPDGSAMAYVSY-FKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP 320 (396)
T ss_dssp ECTTSSCEEEEEE-ETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred ECCCCCEEEEEec-CCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence 9999998776521 0011124599999988765432211 11 23 88999 999888764 347
Q ss_pred cEEEEecCCCCC
Q 019847 304 TIRFWEAFGPSG 315 (335)
Q Consensus 304 ~v~iw~~~~~~~ 315 (335)
.|++||+.+++.
T Consensus 321 ~i~~~d~~~~~~ 332 (396)
T 3c5m_A 321 FLYVLNTKAKSA 332 (396)
T ss_dssp EEEEEETTTTBC
T ss_pred cEEEEecccCce
Confidence 899999887653
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-15 Score=122.27 Aligned_cols=275 Identities=9% Similarity=-0.012 Sum_probs=188.8
Q ss_pred ccceeeeecCC-ceEEEec-CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeE-
Q 019847 17 YYSKVIDWGRN-NVLAVAL-GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV- 93 (335)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~-~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~- 93 (335)
..+.+++++++ .++++.. ++.|.+||.. ++.. .+....+...+.++++++++.++++...++.|..|+.. ++..
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~ 91 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKE 91 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEE
Confidence 35667887764 5666654 6899999988 6543 33334455779999999999887777668899999976 3322
Q ss_pred eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 94 RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
..+......+..+++.+ ++.++++...++.|..||. ++.............+..+++.++++++++...++.|..||.
T Consensus 92 ~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 92 YTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE 169 (299)
T ss_dssp EECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred EeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC
Confidence 12222445788999998 8888888777889999998 344322222334567899999999988887777789999997
Q ss_pred cCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec---CCcEeEEEeCCCCceeee
Q 019847 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA---KAQICGLEWNRHHKEILS 250 (335)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 250 (335)
+... .. .........+..+++++++. ++++.. .++.|.+||. +++... +.. ...+..++++++|...++
T Consensus 170 -~g~~-~~-~~~~~~~~~~~~i~~~~~g~-l~v~~~--~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 170 -SGDI-TE-FKIPTPASGPVGITKGNDDA-LWFVEI--IGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp -TCCE-EE-EECSSTTCCEEEEEECTTSS-EEEEET--TTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEE
T ss_pred -CCcE-EE-eeCCCCCCcceeEEECCCCC-EEEEcc--CCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEe
Confidence 3221 11 11233445688999999986 555543 5789999998 666433 322 356889999999986554
Q ss_pred eeeeeeecCCCeEEEEECCCCceee-cccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 251 GHGFSASGDGNKLCLWKYPNMTKVG-ELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
. ..++.|..||. +++... .+..+...+.++++ ++++++++.. .+.+..++....
T Consensus 242 ~------~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 242 E------WGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp E------TTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred c------cCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 3 35789999998 443322 13344567899999 8888777655 566777776654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-18 Score=153.30 Aligned_cols=277 Identities=12% Similarity=-0.029 Sum_probs=178.4
Q ss_pred ecCCceEEEecCC---eEEEEE--ecCCceeeEEee----cCCCCCceEEEEcCCCCEEEEE-----ECCCcEEEEeCCC
Q 019847 24 WGRNNVLAVALGP---VLFLWK--WENGKVKKLLQV----PGEDDYPTSVSWSHDAKTLAVG-----YMDSKLQLWDAET 89 (335)
Q Consensus 24 ~~~~~~~~~~~~~---~i~vw~--~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~-----~~dg~i~iw~~~~ 89 (335)
..++.++....++ .-.+|. ...++...++.. .+|...+..++|||||++||.+ +.+..|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 3445555554432 344454 445544333322 2455578999999999999854 3346899999999
Q ss_pred ceeEeeecccccceeEeeecCCCCCEEEEeeCCCc-------------EEEEecccCCe---eeEEeecCCCCEEEEEee
Q 019847 90 SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKS-------------IINHDVRVSNN---VTSCIKAHSGEVCGLKWS 153 (335)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~ 153 (335)
++.+..-.........++|+| +++.|+.++.+.. |++|++.++.. +......+...+..+.|+
T Consensus 157 g~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S 235 (695)
T 2bkl_A 157 GEWSKVDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS 235 (695)
T ss_dssp CCBCSSCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC
T ss_pred CCCcCCcccCcccccceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC
Confidence 886511111111126899999 9999998888766 99999986652 222223355678999999
Q ss_pred cCCCEEEEEeCCC----eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEec-CCCCCeEEEEECCCCce--
Q 019847 154 NEGNLLASGGDDN----VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG-GREDGCIKIWNVQKGTC-- 226 (335)
Q Consensus 154 ~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~~-- 226 (335)
|||++|+.++.++ .|++||.... ....+..+...+....+ +++. +++... +..++.|.+||+.+++.
T Consensus 236 pDG~~l~~~~~~~~~~~~l~~~~~~~~----~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~ 309 (695)
T 2bkl_A 236 RDGKYLFVYILRGWSENDVYWKRPGEK----DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS 309 (695)
T ss_dssp TTSCCEEEEEEETTTEEEEEEECTTCS----SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred CCCCEEEEEEeCCCCceEEEEEcCCCC----ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC
Confidence 9999998887666 6666654332 23333345555666666 6666 555542 11358999999987753
Q ss_pred -EEEeec--CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC-CCceeecccCC-CCceeEeEEcCCCCEEEEE--
Q 019847 227 -IHGIDA--KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP-NMTKVGELQSS-NSRILDLSQSPDGLTVATA-- 299 (335)
Q Consensus 227 -~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~-- 299 (335)
...+.. ...+..+.++ ++..+++. ..++..++|.+. +++....+..+ .+.+..++++|++..++..
T Consensus 310 ~~~l~~~~~~~~l~~~~~~-~~~lv~~~------~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s 382 (695)
T 2bkl_A 310 WKEIVPEDSSASLLSVSIV-GGHLSLEY------LKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFT 382 (695)
T ss_dssp CEEEECCCSSCEEEEEEEE-TTEEEEEE------EETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEE
T ss_pred CeEEecCCCCCeEEEEEEE-CCEEEEEE------EECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEc
Confidence 333333 3357778887 55555554 457777777554 35555556554 5678889999999777633
Q ss_pred --eCCCcEEEEecCCCC
Q 019847 300 --GADETIRFWEAFGPS 314 (335)
Q Consensus 300 --~~dg~v~iw~~~~~~ 314 (335)
...+.|++||+.+++
T Consensus 383 s~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 383 SFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp ETTEEEEEEEEETTTCC
T ss_pred CCCCCCEEEEEECCCCc
Confidence 345789999998764
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-17 Score=129.97 Aligned_cols=213 Identities=11% Similarity=0.043 Sum_probs=163.3
Q ss_pred CCCEEEEEECCCcEEEEeCCCceeEeeecccc-cceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC-CCC
Q 019847 69 DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH-RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH-SGE 146 (335)
Q Consensus 69 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~ 146 (335)
.+++|++++.++.|.+||.++++.+.++..+. ..+.++.+.| ++++++ +.++.|..||. +++.+.+ +..+ ...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~-~~~~~~~~ 78 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWN-IAAPAGCE 78 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEE-EECCTTCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEE-EcCCCCcc
Confidence 46789999999999999999999999998765 4789999999 899888 45778999998 5665444 4433 357
Q ss_pred EEEEEeecCCCEEEEEeC-CCeEEEEEccCCCcccceeecc------CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEE
Q 019847 147 VCGLKWSNEGNLLASGGD-DNVVRIWERSKMSSSKSLHRFT------DHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219 (335)
Q Consensus 147 i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~ 219 (335)
+.++.+.++|+++++.+. ++.+..+|.. + +.+..+. .+......+...+++..+ ++.. .++.|..|
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-G---k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l-v~~~--~~~~v~~~ 151 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNMK-G---EVLSKTEFETGIERPHAQFRQINKNKKGNYL-VPLF--ATSEVREI 151 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECTT-S---CEEEEEEECCSCSSGGGSCSCCEECTTSCEE-EEET--TTTEEEEE
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeCC-C---CEEEEEeccCCCCcccccccCceECCCCCEE-EEec--CCCEEEEE
Confidence 889999999999999887 7778777743 2 2222221 111234556788998655 4444 79999999
Q ss_pred ECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC------CceeEeEEcCCC
Q 019847 220 NVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN------SRILDLSQSPDG 293 (335)
Q Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~------~~i~~~~~~~~~ 293 (335)
|.+ |+.+.++..+.....+...+++..++++ ..++.|..+|..+++.+.++..+. ..+..++..++|
T Consensus 152 d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~------~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G 224 (276)
T 3no2_A 152 APN-GQLLNSVKLSGTPFSSAFLDNGDCLVAC------GDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNG 224 (276)
T ss_dssp CTT-SCEEEEEECSSCCCEEEECTTSCEEEEC------BTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTS
T ss_pred CCC-CCEEEEEECCCCccceeEcCCCCEEEEe------CCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCC
Confidence 988 9999999877777788889999988876 557789999999999988775432 237788889999
Q ss_pred CEEEEEe
Q 019847 294 LTVATAG 300 (335)
Q Consensus 294 ~~l~~~~ 300 (335)
.++++..
T Consensus 225 ~i~v~~~ 231 (276)
T 3no2_A 225 GLYICNW 231 (276)
T ss_dssp CEEEEEE
T ss_pred CEEEEec
Confidence 8888773
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-16 Score=137.42 Aligned_cols=292 Identities=11% Similarity=0.059 Sum_probs=200.5
Q ss_pred ceeeeecCC--ceEEEecCCeEEEEEec--CCceeeEEeecCCCCCceEEEEc----CCCCEEEEEEC-CCcEEEEeCCC
Q 019847 19 SKVIDWGRN--NVLAVALGPVLFLWKWE--NGKVKKLLQVPGEDDYPTSVSWS----HDAKTLAVGYM-DSKLQLWDAET 89 (335)
Q Consensus 19 ~~~~~~~~~--~~~~~~~~~~i~vw~~~--~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-dg~i~iw~~~~ 89 (335)
+..+.++++ .+++++.++.|.+||+. +++....+.. ......++|+ |+|++++++.. ++.+.++|..+
T Consensus 199 p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~---G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t 275 (567)
T 1qks_A 199 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI---GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 275 (567)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC---CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec---CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence 345677764 56777788999999995 6665544432 2346899999 69999988764 58999999999
Q ss_pred ceeEeeeccc----------cc-ceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCE
Q 019847 90 SKLVRNLEGH----------HR-RVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNL 158 (335)
Q Consensus 90 ~~~~~~~~~~----------~~-~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 158 (335)
.+.+..+... .. .+..+..++.....++....+|.|.++|......+.............+.|+|++++
T Consensus 276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~ 355 (567)
T 1qks_A 276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY 355 (567)
T ss_dssp CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCE
T ss_pred CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCE
Confidence 9988776532 12 567788888445566666778999999987654433323334556778999999998
Q ss_pred EEEEe-CCCeEEEEEccCCCcccceee--ccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC-------CceEE
Q 019847 159 LASGG-DDNVVRIWERSKMSSSKSLHR--FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK-------GTCIH 228 (335)
Q Consensus 159 l~~~~-~dg~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-------~~~~~ 228 (335)
++++. .++.|.++|+.+......+.. ...|.+.-..+ ++|++..++++.. -.++.|.++|..+ .+.+.
T Consensus 356 ~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~-~g~~~Vsvid~~~~~~~~~~~kvv~ 433 (567)
T 1qks_A 356 FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSH-MGDDSVALIGTDPEGHPDNAWKILD 433 (567)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred EEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCC-CCCCeEEEecCCCCCCccccCEEEE
Confidence 87766 578999999887543322222 12243322222 5888666766652 1368999999987 66788
Q ss_pred EeecCC-cEeEEEeCCCCceeeeeeeeeeecC---CCeEEEEECCCC-----cee-ecc--------cCCCCceeEeEEc
Q 019847 229 GIDAKA-QICGLEWNRHHKEILSGHGFSASGD---GNKLCLWKYPNM-----TKV-GEL--------QSSNSRILDLSQS 290 (335)
Q Consensus 229 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~i~d~~~~-----~~~-~~~--------~~~~~~i~~~~~~ 290 (335)
.++... .-..+..+|+++++.+...+ ..+ .+.|.++|+.+. ... ..+ ......+..+.|+
T Consensus 434 ~i~~~g~g~~~i~~~p~~~~l~v~~~~--~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (567)
T 1qks_A 434 SFPALGGGSLFIKTHPNSQYLYVDATL--NPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFN 511 (567)
T ss_dssp EEECSCSCCCCEECCTTCSEEEEECTT--CSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEEC
T ss_pred EEecCCCCCEEEEeCCCCCeEEEecCC--CCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeEC
Confidence 887643 33567899999998875211 011 469999999876 211 122 1123478999999
Q ss_pred CCCCEEEEEe-----CCCcEEEEecCCCCCCC
Q 019847 291 PDGLTVATAG-----ADETIRFWEAFGPSGDE 317 (335)
Q Consensus 291 ~~~~~l~~~~-----~dg~v~iw~~~~~~~~~ 317 (335)
|+|+.+..+. .++.|.++|..+.+...
T Consensus 512 ~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~ 543 (567)
T 1qks_A 512 KDGTEVWFSVWNGKDQESALVVVDDKTLELKH 543 (567)
T ss_dssp TTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred CCCCEEEEEeecCCCCCCcEEEEECCCceEEE
Confidence 9998887663 37999999988876543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-16 Score=129.20 Aligned_cols=239 Identities=10% Similarity=0.090 Sum_probs=170.4
Q ss_pred cceeeeecCC-ceEEEecCC-------------------------eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCC
Q 019847 18 YSKVIDWGRN-NVLAVALGP-------------------------VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAK 71 (335)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~-------------------------~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 71 (335)
.+..++++++ +++++...+ .|.+||.++++...... .++-..+..++++|+|+
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-KNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-TTTCSSEEEEEECTTSC
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-CCccCCceEEEECCCCC
Confidence 4667888874 566655443 69999998888754332 24456789999999999
Q ss_pred EEEEEECCCcEEEEeCCCce-eEeee---------cccccceeEeeecCCCCCEEEEee-CCCcEEEEecccCCeeeEEe
Q 019847 72 TLAVGYMDSKLQLWDAETSK-LVRNL---------EGHHRRVATSSWNHWNGHILTSGS-KDKSIINHDVRVSNNVTSCI 140 (335)
Q Consensus 72 ~l~~~~~dg~i~iw~~~~~~-~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~ 140 (335)
++++...++.|++|+..... .+..+ ..+-.....++++|.++.++++.+ .++.|++|+.. +.. ...+
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~-~~~~ 181 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKF-VTQW 181 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCE-EEEE
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCE-EEEe
Confidence 88888888999999986442 44444 233446889999986677777776 68999999943 443 3333
Q ss_pred ec----------CCCCEEEEEeecC-CCEEEEEeCCCeEEEEEccCCCcccceeec--cCCCCCeeEEEecCCCCcEEEE
Q 019847 141 KA----------HSGEVCGLKWSNE-GNLLASGGDDNVVRIWERSKMSSSKSLHRF--TDHCGGVKALAWSPHQVNVLAT 207 (335)
Q Consensus 141 ~~----------~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~ 207 (335)
.. +......++++|+ ++++++...++.|++||..++. .+..+ ..+...+..++++| + .++..
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~---~~~~~~~~~~~~~~~~~~~~p-g-~~~~~ 256 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE---FVREIKHASFGRNVFAISYIP-G-FLFAV 256 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC---EEEEECCTTTTTCEEEEEEET-T-EEEEE
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc---EEEEEeccccCCCcceeeecC-C-EEEEe
Confidence 21 2234889999998 7777777788999999987433 33333 34556788999999 3 33333
Q ss_pred ec-----CCCCCeEEEEECCCCceEEEee----cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC
Q 019847 208 GG-----GREDGCIKIWNVQKGTCIHGID----AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 208 ~~-----g~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
.+ ...+..|++||..+++.+..+. ....+..++++|+|..+++. ..++.|++|++..
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad------~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGD------AHTNTVWKFTLTE 322 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEE------SSSCCEEEEEEEE
T ss_pred CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEE------CCCCEEEEEeCCc
Confidence 32 1135589999999999998874 23458899999999655554 5688999999754
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.3e-17 Score=133.82 Aligned_cols=240 Identities=9% Similarity=0.026 Sum_probs=170.4
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS 138 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 138 (335)
..|.+++|++++..++..+.++.++.| .++....+..+...+.+++|++ ++++++++..++.|.+||..++.. ..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~-~~ 80 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEI-KR 80 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCE-EE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcE-EE
Confidence 457788899988877777778899999 3556666666777789999998 888888888899999999876543 33
Q ss_pred EeecCCCCEEEEEeecCCCEEEEEeCC----CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC----
Q 019847 139 CIKAHSGEVCGLKWSNEGNLLASGGDD----NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG---- 210 (335)
Q Consensus 139 ~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g---- 210 (335)
....+...+.+++++|+++++++...+ +.|.+||.+.......+. ...+...+..++++|++. ++++...
T Consensus 81 ~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~ 158 (333)
T 2dg1_A 81 PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE-DLSTAYCIDDMVFDSKGG-FYFTDFRGYST 158 (333)
T ss_dssp EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC-SSSSCCCEEEEEECTTSC-EEEEECCCBTT
T ss_pred EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc-cCccCCcccceEECCCCC-EEEEecccccc
Confidence 333566789999999999988877666 689999977543211111 112345689999999986 4444320
Q ss_pred CCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC-Cceee--------cccCCC
Q 019847 211 REDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN-MTKVG--------ELQSSN 281 (335)
Q Consensus 211 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~--------~~~~~~ 281 (335)
...+.|..+|..+++..........+..++|+|+++.++.+. ..++.|.+||..+ +..+. .+.++
T Consensus 159 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~-----~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~- 232 (333)
T 2dg1_A 159 NPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE-----TTANRLHRIALEDDGVTIQPFGATIPYYFTGH- 232 (333)
T ss_dssp BCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE-----GGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-
T ss_pred CCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEe-----CCCCeEEEEEecCCCcCcccccceEEEecCCC-
Confidence 013567777776655544333344678899999998665432 4478999999864 33221 12222
Q ss_pred CceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 282 SRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 282 ~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
..+..++++++|+++++...++.|.+|+..
T Consensus 233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 457889999999988888788999999984
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-14 Score=115.09 Aligned_cols=273 Identities=10% Similarity=-0.005 Sum_probs=185.9
Q ss_pred ccceeeeecC-CceEEEe-cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEe
Q 019847 17 YYSKVIDWGR-NNVLAVA-LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR 94 (335)
Q Consensus 17 ~~~~~~~~~~-~~~~~~~-~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 94 (335)
..+.++.+++ +.++++. .++.|.+||.. ++... +.++.+...+.++++.+++++.++...++.|..+|.. ++...
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~ 96 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE 96 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE
Confidence 3556677776 4555555 57899999987 66543 3444445678999999999877776667889999987 55432
Q ss_pred -eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 95 -NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 95 -~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
........+..+++.+ +++++++...++.|..+|.. +.............+..+++.++++++++...++.|..+|.
T Consensus 97 ~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 97 YPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN 174 (300)
T ss_dssp EECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred ecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC
Confidence 2222346788999998 88888887778899999987 44322223334567899999999997776666789999997
Q ss_pred cCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEE-ee-cCCcEeEEEeCCCCceeeee
Q 019847 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHG-ID-AKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 251 (335)
. ... . ......+...+..+++++++. ++++.. ..+.|.+||. +++.... .. ....+.+++++++|...++.
T Consensus 175 ~-g~~-~-~~~~~~~~~~~~~i~~d~~g~-l~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 175 T-GKL-E-EYPLPTNAAAPVGITSGNDGA-LWFVEI--MGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp T-CCE-E-EEECSSTTCCEEEEEECTTSS-EEEEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred C-CcE-E-EeeCCCCCCCcceEEECCCCC-EEEEcc--CCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence 3 221 1 112223445688999999884 555543 5678999998 5554332 22 23468899999999865544
Q ss_pred eeeeeecCCCeEEEEECCCCcee-ecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 252 HGFSASGDGNKLCLWKYPNMTKV-GELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 252 ~~~~~~~~~~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
..++.|..||. +++.. ..+......+.+++++++|+++++.. . .|..++.
T Consensus 248 ------~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 248 ------WGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ------TTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ------cCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 34689999998 44332 22333445688999999998666554 4 6666664
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.3e-16 Score=124.21 Aligned_cols=236 Identities=10% Similarity=0.057 Sum_probs=163.3
Q ss_pred ccceeeeecCC-c-eEE-EecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeE
Q 019847 17 YYSKVIDWGRN-N-VLA-VALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV 93 (335)
Q Consensus 17 ~~~~~~~~~~~-~-~~~-~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 93 (335)
.....+.|+++ . ++. ...++.|..|+.+++ . ..+ ..+...+.+++++|+|+++++...++.|.+||..+++..
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~~--~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SPE--MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EEE--ESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EEE--ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence 34567888874 3 444 456889999999887 3 333 345677899999999998777766789999999888754
Q ss_pred eeeccc----ccceeEeeecCCCCCEEEE----eeC-------------CCcEEEEecccCCeeeEEeecCCCCEEEEEe
Q 019847 94 RNLEGH----HRRVATSSWNHWNGHILTS----GSK-------------DKSIINHDVRVSNNVTSCIKAHSGEVCGLKW 152 (335)
Q Consensus 94 ~~~~~~----~~~v~~~~~~~~~~~~l~~----~~~-------------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~ 152 (335)
...... ...+..++++| +++++++ |+. .+.|..++.. .. ...+..+......++|
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~-~~~~~~~~~~~~gi~~ 179 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GT-LSAPIRDRVKPNGLAF 179 (296)
T ss_dssp EEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SC-EEEEECCCSSEEEEEE
T ss_pred EEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC--CC-EEEeecCCCCCccEEE
Confidence 433221 23467899999 8888887 331 2355555543 33 3334556677899999
Q ss_pred ecCCCEEEEEeCCCeEEEEEccCCCcc-cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee
Q 019847 153 SNEGNLLASGGDDNVVRIWERSKMSSS-KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID 231 (335)
Q Consensus 153 ~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 231 (335)
+|+++.+++.+.++.|++||+...... .....+..+...+..++++++|. ++++. ++.|.+||.. ++.+..+.
T Consensus 180 s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~----~~~v~~~~~~-g~~~~~~~ 253 (296)
T 3e5z_A 180 LPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA----GDGVHVLTPD-GDELGRVL 253 (296)
T ss_dssp CTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE----TTEEEEECTT-SCEEEEEE
T ss_pred CCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc----CCeEEEECCC-CCEEEEEE
Confidence 999998877777899999998732111 11122233455677899999996 55443 6889999986 77777777
Q ss_pred cCCcEeEEEe-CCCCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 232 AKAQICGLEW-NRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 232 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
.+..+.+++| .|+++.++++ + .+.+.-++..+.+.
T Consensus 254 ~~~~~~~~~f~~~d~~~L~v~------t-~~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 254 TPQTTSNLCFGGPEGRTLYMT------V-STEFWSIETNVRGL 289 (296)
T ss_dssp CSSCCCEEEEESTTSCEEEEE------E-TTEEEEEECSCCBC
T ss_pred CCCCceeEEEECCCCCEEEEE------c-CCeEEEEEcccccc
Confidence 6555889999 6888877765 2 35666667666554
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-15 Score=138.01 Aligned_cols=245 Identities=9% Similarity=0.058 Sum_probs=169.0
Q ss_pred ccceeeeecCC-ceEE-Eec-CC----eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCc--------
Q 019847 17 YYSKVIDWGRN-NVLA-VAL-GP----VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSK-------- 81 (335)
Q Consensus 17 ~~~~~~~~~~~-~~~~-~~~-~~----~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------- 81 (335)
..+..++|+++ +.++ +.. +| .|++||+.+++..... +.. ..+..++|+|||+.|+.++.++.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-ccC--cccceEEEEeCCCEEEEEEECCccccccccc
Confidence 35677899985 4444 333 22 8999999999876532 222 23678999999999999987766
Q ss_pred --------EEEEeCCCce----eEeeecccccceeEeeecCCCCCEEEEeeC-----CCcEEEEeccc------CCeeeE
Q 019847 82 --------LQLWDAETSK----LVRNLEGHHRRVATSSWNHWNGHILTSGSK-----DKSIINHDVRV------SNNVTS 138 (335)
Q Consensus 82 --------i~iw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~------~~~~~~ 138 (335)
|++|++.+++ .+.....+...+..+.|+| +++.|+..+. +..|++||+.+ +.....
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 9999998875 2223333455678999999 8888877664 56899999986 332244
Q ss_pred EeecCCCCEEEEEeecCCCEEEEEeCC----CeEEEEEccCCCcccceeeccCCCC--CeeEEEecCCCCcEEEEecCCC
Q 019847 139 CIKAHSGEVCGLKWSNEGNLLASGGDD----NVVRIWERSKMSSSKSLHRFTDHCG--GVKALAWSPHQVNVLATGGGRE 212 (335)
Q Consensus 139 ~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~g~~ 212 (335)
.+..+...+.. .|+|+|+.|+..+.+ +.|.+||+..+.. .....+..+.. .+..+.|++++ .++++.. .
T Consensus 281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~--~ 355 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE-SKWKVLVPEHEKDVLEWVACVRSN-FLVLCYL--H 355 (710)
T ss_dssp EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCEEEEEEEETTT-EEEEEEE--E
T ss_pred EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-ccceeccCCCCCCeEEEEEEEcCC-EEEEEEE--E
Confidence 45556655554 488988888776653 3699999876431 12233334433 57789998655 5666665 6
Q ss_pred CC--eEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc
Q 019847 213 DG--CIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 213 d~--~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 272 (335)
++ .|++||+.+++.+..+.. ...+..+.++|++..++.. +.+....+.+..||+.+++
T Consensus 356 ~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~--~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 356 DVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQ--FTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEE--EECSSCCCEEEEEETTSSS
T ss_pred CCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEE--EeCCCCCCEEEEEECCCCc
Confidence 76 467778877877777664 3467889999999877644 2233567899999998876
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-15 Score=123.60 Aligned_cols=239 Identities=8% Similarity=0.070 Sum_probs=166.3
Q ss_pred CCCceEEEEcCCCCEEEE-------EECCCcEEEEeCCCceeEeeec----ccccceeEeeecCCC-CCEEEEeeCCCcE
Q 019847 58 DDYPTSVSWSHDAKTLAV-------GYMDSKLQLWDAETSKLVRNLE----GHHRRVATSSWNHWN-GHILTSGSKDKSI 125 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~-------~~~dg~i~iw~~~~~~~~~~~~----~~~~~v~~~~~~~~~-~~~l~~~~~dg~i 125 (335)
-..+.+++|++++.++++ +..++.|.+||..+++...... ++...+..+++++ + ++++++.. .+.|
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~~-~~~l 94 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADM-RLGL 94 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEET-TTEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEEEC-CCCE
Confidence 445789999999987777 5678899999988877543222 2446788999998 6 66555544 4478
Q ss_pred EEEecccCCeeeEE-eec----CCCCEEEEEeecCCCEEEEEeCC---------------CeEEEEEccCCCcccceeec
Q 019847 126 INHDVRVSNNVTSC-IKA----HSGEVCGLKWSNEGNLLASGGDD---------------NVVRIWERSKMSSSKSLHRF 185 (335)
Q Consensus 126 ~~~d~~~~~~~~~~-~~~----~~~~i~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~ 185 (335)
.+||.. +.. ... ... ....+.+++++++++++++...+ +.|..||.. .. ...+
T Consensus 95 ~~~d~~-g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~----~~~~ 167 (314)
T 1pjx_A 95 LVVQTD-GTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ----MIQV 167 (314)
T ss_dssp EEEETT-SCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC----EEEE
T ss_pred EEEeCC-CCE-EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC----EEEe
Confidence 899987 442 222 111 12347899999999888776655 567777644 21 1122
Q ss_pred cCCCCCeeEEEec----CCCCcEEEEecCCCCCeEEEEECC-CCce-----EEEeecC--CcEeEEEeCCCCceeeeeee
Q 019847 186 TDHCGGVKALAWS----PHQVNVLATGGGREDGCIKIWNVQ-KGTC-----IHGIDAK--AQICGLEWNRHHKEILSGHG 253 (335)
Q Consensus 186 ~~~~~~v~~~~~~----~~~~~~~~~~~g~~d~~i~i~d~~-~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 253 (335)
..+......++++ |+++.++++.. .++.|.+||.. +++. ...+... ..+..++++++|...++.
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-- 243 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN-- 243 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE--
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEEC--CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEE--
Confidence 2233446789999 99877777654 67899999986 4442 2222222 457889999999877654
Q ss_pred eeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEE-EEEeCCCcEEEEecCCC
Q 019847 254 FSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTV-ATAGADETIRFWEAFGP 313 (335)
Q Consensus 254 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~ 313 (335)
..++.|.+||..+++.+..+..+...+.+++++|+++.| ++...++.|..|++...
T Consensus 244 ----~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 244 ----WGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ----ETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred ----cCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 347899999998777776666666779999999999855 45556788999998754
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.5e-16 Score=127.64 Aligned_cols=231 Identities=13% Similarity=0.201 Sum_probs=151.5
Q ss_pred cceeeeecCC--ceEEEecC---C--eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC-----------
Q 019847 18 YSKVIDWGRN--NVLAVALG---P--VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD----------- 79 (335)
Q Consensus 18 ~~~~~~~~~~--~~~~~~~~---~--~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------- 79 (335)
.+..+.|+++ .++.++.+ + .|.+|++.+++........ . +..++|+|+|+.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~---~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK---N-IRSLEWNEDSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES---E-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC---C-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence 3556889974 34444432 3 4888888888765554432 3 8999999999999888642
Q ss_pred ----------------CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCC-------cEEEEecccCCee
Q 019847 80 ----------------SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK-------SIINHDVRVSNNV 136 (335)
Q Consensus 80 ----------------g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~~~d~~~~~~~ 136 (335)
..|.+||+.+++.+..+.. . .+..+.|+| ++ +++++..++ ...+|.+. ....
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~ 210 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWE-DGKE 210 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEE-TTEE
T ss_pred ccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeC-CCce
Confidence 5799999998887455554 4 888999999 77 777776542 44555555 4433
Q ss_pred eEEeecCCCCEEEEEeecCCCEEEEEeCC--------CeEEEEEccCCCcccceeeccCCCCCeeE-EEecCCCCcEEEE
Q 019847 137 TSCIKAHSGEVCGLKWSNEGNLLASGGDD--------NVVRIWERSKMSSSKSLHRFTDHCGGVKA-LAWSPHQVNVLAT 207 (335)
Q Consensus 137 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~ 207 (335)
.. +..+ ..+..+ +|+|++|+.++.+ ..|.+|| .+ +.......+...+.. +.|+ ++ ++++
T Consensus 211 ~~-l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~---~~~~l~~~~~~~~~~~~~~s-dg--~~~~ 278 (347)
T 2gop_A 211 EK-MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK---EVMGILDEVDRGVGQAKIKD-GK--VYFT 278 (347)
T ss_dssp EE-EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS---CEEESSTTCCSEEEEEEEET-TE--EEEE
T ss_pred EE-eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC---ceEeccccCCcccCCccEEc-Cc--EEEE
Confidence 33 3333 555554 9999999887754 3688887 22 223333445667876 8999 76 6666
Q ss_pred ecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCe-EEEEECCCCceeecccCCCC
Q 019847 208 GGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNK-LCLWKYPNMTKVGELQSSNS 282 (335)
Q Consensus 208 ~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~i~d~~~~~~~~~~~~~~~ 282 (335)
++ .++.+++| +.+++..........+.++.|+| ..++++ +.++. ..+|.+. ++ ...+..|..
T Consensus 279 ~~--~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~------~~~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 279 LF--EEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLK------ETATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp EE--ETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEE------ECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred Ee--cCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEE------cCCCChHHheEeC-Cc-EEEeccccH
Confidence 55 78999999 87676655555567789999999 444443 22333 2566554 43 344555544
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-14 Score=115.72 Aligned_cols=243 Identities=10% Similarity=0.040 Sum_probs=171.9
Q ss_pred EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee-ecccccceeEeeecCCCCCEEEEeeCCCcEEEEec
Q 019847 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN-LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 130 (335)
+.++.+...+.++++.++|+.+++...++.|.+||.. ++.... .......+..+++.+ ++.++++...++.|..||.
T Consensus 8 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 8 LNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITK 85 (299)
T ss_dssp EECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT
T ss_pred EcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEECC
Confidence 3445556779999999999877766667899999988 554332 223456788999998 8888888777889999997
Q ss_pred ccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC
Q 019847 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210 (335)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 210 (335)
. +.............+..+++.++++++++...++.|..||. +... ...........+..+++.+++. ++++..
T Consensus 86 ~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~--~~~~~~~~~~~~~~i~~~~~g~-l~v~~~- 159 (299)
T 2z2n_A 86 K-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI--REYELPNKGSYPSFITLGSDNA-LWFTEN- 159 (299)
T ss_dssp T-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE--EEEECSSTTCCEEEEEECTTSC-EEEEET-
T ss_pred C-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE--EEecCCCCCCCCceEEEcCCCC-EEEEeC-
Confidence 6 33211112224567899999999988887777889999997 3221 1112223445688999999985 555543
Q ss_pred CCCCeEEEEECCCCceEEE-ee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeec-ccCCCCceeEe
Q 019847 211 REDGCIKIWNVQKGTCIHG-ID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE-LQSSNSRILDL 287 (335)
Q Consensus 211 ~~d~~i~i~d~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~~ 287 (335)
.++.|..||. +++.... .. ....+..+++++++...++. ..++.|.+||. +++.... ...+...+.++
T Consensus 160 -~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~------~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i 230 (299)
T 2z2n_A 160 -QNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVE------IIGNKIGRITT-SGEITEFKIPTPNARPHAI 230 (299)
T ss_dssp -TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEE------TTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred -CCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEc------cCCceEEEECC-CCcEEEEECCCCCCCceeE
Confidence 5789999998 6665432 22 23457899999998865544 45789999998 6554322 33345678999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecC
Q 019847 288 SQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 288 ~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
+++++|+++++...++.|..|+..
T Consensus 231 ~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 231 TAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp EECSTTCEEEEETTTTEEEEEETT
T ss_pred EECCCCCEEEeccCCceEEEECCC
Confidence 999999877776678899999973
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-14 Score=118.63 Aligned_cols=266 Identities=9% Similarity=-0.015 Sum_probs=177.1
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE----------CCCcEEEEeCCCceeEeeeccc-------
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY----------MDSKLQLWDAETSKLVRNLEGH------- 99 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~------- 99 (335)
.|.++|..+++....+. .... . .++++|||++++++. .++.|.+||..+.+.+..+...
T Consensus 48 ~v~v~D~~t~~~~~~i~--~g~~-p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~ 123 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVN--GGFL-P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV 123 (373)
T ss_pred EEEEEECCCCeEEEEec--CCCC-C-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence 88999999988755443 2223 3 899999999999886 3678999999998887776432
Q ss_pred ccceeEeeecCCCCCEEEEeeC--CCcEEEEecccCCeeeEE-eecCCCCEEEEEeecCC-CEEEEEeCCCeEEEEEccC
Q 019847 100 HRRVATSSWNHWNGHILTSGSK--DKSIINHDVRVSNNVTSC-IKAHSGEVCGLKWSNEG-NLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 100 ~~~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 175 (335)
......+.++| ++++|+++.. ++.|.++| .+++. ... +. ... ++.+.|++ +.+++.+.||.+.++|. .
T Consensus 124 g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~-~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~ 195 (373)
T 2mad_H 124 GPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSS-DDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-A 195 (373)
T ss_pred CCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCE-EeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-C
Confidence 12356889999 9998888874 57899999 76654 333 22 222 24445544 45667778999999998 5
Q ss_pred CCccccee--eccCCCCCe-eEEEecCCCCcEEEEecCCCCCeEEEEECCCCc--eEEEeec-----------CCcEeEE
Q 019847 176 MSSSKSLH--RFTDHCGGV-KALAWSPHQVNVLATGGGREDGCIKIWNVQKGT--CIHGIDA-----------KAQICGL 239 (335)
Q Consensus 176 ~~~~~~~~--~~~~~~~~v-~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~-----------~~~~~~~ 239 (335)
+....... .......++ ....+.+++..++... ..+.+.+.|+..+. .+..++. +.....+
T Consensus 196 g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~ 272 (373)
T 2mad_H 196 GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV---YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQV 272 (373)
T ss_pred CcEEEEEeccccccCCcceeecceeEecCCEEEEEc---CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeE
Confidence 43221111 000112222 2345666666655554 47899999997653 2233321 1223447
Q ss_pred EeCCCCceeeeeeeeee----ecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCC-EEEEEe-CCCcEEEEecCCC
Q 019847 240 EWNRHHKEILSGHGFSA----SGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGL-TVATAG-ADETIRFWEAFGP 313 (335)
Q Consensus 240 ~~~~~~~~~~~~~~~~~----~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~v~iw~~~~~ 313 (335)
.++|+++.+++...-.. ....+.|.++|..+++.+.++... .....++|+|||+ +++++. .++.|.+||+.+.
T Consensus 273 ~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 78999888766421000 002468999999999998888543 3578999999999 777777 5899999999988
Q ss_pred CCCCC
Q 019847 314 SGDED 318 (335)
Q Consensus 314 ~~~~~ 318 (335)
+....
T Consensus 352 ~vv~~ 356 (373)
T 2mad_H 352 DQDQS 356 (373)
T ss_pred CEEee
Confidence 76554
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-15 Score=118.69 Aligned_cols=239 Identities=8% Similarity=-0.021 Sum_probs=161.4
Q ss_pred cceeeeecCC-ceEE-E-ecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEe
Q 019847 18 YSKVIDWGRN-NVLA-V-ALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR 94 (335)
Q Consensus 18 ~~~~~~~~~~-~~~~-~-~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 94 (335)
....++++++ .+++ + ..++.|.+|+..+..... .. ..+...+.+++++++++++++.. ++.|.+||........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~-~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LP-FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-CC-CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-Ee-eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee
Confidence 5667888764 5555 4 467899999976654321 11 23345688999999998665555 8899999987654432
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
........+..+++.+ +++++++...++.|.+|+..+.... .........+..++++++++++++...++.|.+||..
T Consensus 102 ~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQT-VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp CCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCE-ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred eecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeE-eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence 2222335788999998 8888888778889999976543322 1122233467889999999977777778899999976
Q ss_pred CCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeee
Q 019847 175 KMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHG 253 (335)
Q Consensus 175 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 253 (335)
... .......+...+..+++++++ .++++.. .++.|.+||............ ...+..++++++|..+++.
T Consensus 180 ~~~---~~~~~~~~~~~p~~i~~d~~g-~l~v~~~--~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~-- 251 (270)
T 1rwi_B 180 SNN---QVVLPFTDITAPWGIAVDEAG-TVYVTEH--NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVAD-- 251 (270)
T ss_dssp TCC---EEECCCSSCCSEEEEEECTTC-CEEEEET--TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEE--
T ss_pred CCc---eEeecccCCCCceEEEECCCC-CEEEEEC--CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEE--
Confidence 532 122222233668899999998 5666654 588999999876544332222 2468899999999865554
Q ss_pred eeeecCCCeEEEEECCCCce
Q 019847 254 FSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 254 ~~~~~~~~~i~i~d~~~~~~ 273 (335)
..++.|++++....+.
T Consensus 252 ----~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 252 ----RGNDRVVKLTSLEHHH 267 (270)
T ss_dssp ----GGGTEEEEECCCGGGS
T ss_pred ----CCCCEEEEEcCCCccc
Confidence 5689999999876554
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-15 Score=137.51 Aligned_cols=246 Identities=10% Similarity=0.042 Sum_probs=158.7
Q ss_pred CCCCceEEEEcCCCCEEEEEECC-----CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCc-------
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYMD-----SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKS------- 124 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~------- 124 (335)
|...+..++|||||++||.+..+ ..|++||+.+++.+... .+...+..++|+| + +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEEST-T-SEEEEEECCCC-------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEEC-C-CEEEEEEecCcccccccc
Confidence 33467889999999999887653 35999999999876542 1223346899999 7 77777766543
Q ss_pred -------EEEEecccCCee-eEEee--cCCCCEEEEEeecCCCEEEEEeCCC-----eEEEEEccCCCcccceeeccCCC
Q 019847 125 -------IINHDVRVSNNV-TSCIK--AHSGEVCGLKWSNEGNLLASGGDDN-----VVRIWERSKMSSSKSLHRFTDHC 189 (335)
Q Consensus 125 -------i~~~d~~~~~~~-~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~ 189 (335)
|++|++.++... ...+. .+...+..+.|+|||++|+..+.++ .|++||+.++.. .....+..+.
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~ 316 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI-GPVTALIPDL 316 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE-CCCEEEECSS
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC-cccEEecCCC
Confidence 889998765421 12222 2334588999999999998887654 899999876411 1023333344
Q ss_pred CCeeEEEecCCCCcEEEEec-CCCCCeEEEEECCCC--ceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEE
Q 019847 190 GGVKALAWSPHQVNVLATGG-GREDGCIKIWNVQKG--TCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265 (335)
Q Consensus 190 ~~v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 265 (335)
..+.... +|+++.++.... +..++.|.+||+.++ +....+... ..+..+.++ ++..+++. ..++..++
T Consensus 317 ~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~------~~dg~~~l 388 (741)
T 1yr2_A 317 KAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASY------IHDAKSQV 388 (741)
T ss_dssp SSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEE------EETTEEEE
T ss_pred CceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEE------EECCEEEE
Confidence 4444443 488887777653 112467999999875 333333333 345567776 44444443 45777666
Q ss_pred EECC-CCceeecccC-CCCceeEeEEcCCCCEEEEE----eCCCcEEEEecCCCC
Q 019847 266 WKYP-NMTKVGELQS-SNSRILDLSQSPDGLTVATA----GADETIRFWEAFGPS 314 (335)
Q Consensus 266 ~d~~-~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~----~~dg~v~iw~~~~~~ 314 (335)
|.+. +++....+.. +.+.+..++++|+++.|+.. ...+.|++||+.+++
T Consensus 389 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 6443 4555555554 35678899999998766622 345789999987654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-14 Score=116.45 Aligned_cols=212 Identities=10% Similarity=0.053 Sum_probs=155.3
Q ss_pred cCCc-eEEEecCCeEEEEEecCCceeeEEeecCCC-CCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccc-c
Q 019847 25 GRNN-VLAVALGPVLFLWKWENGKVKKLLQVPGED-DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH-R 101 (335)
Q Consensus 25 ~~~~-~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~ 101 (335)
+|++ +++++.++.|.+||.++++....+. .+. ..+.++.++|+|++++ +.++.|..||. +++.+..+..+. .
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~--~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYP--LEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEE--CCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeC--CCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 3454 4445579999999999999865544 343 4688999999999888 35778999999 899999888653 5
Q ss_pred ceeEeeecCCCCCEEEEeeC-CCcEEEEecccCCeeeEEee-----cCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC
Q 019847 102 RVATSSWNHWNGHILTSGSK-DKSIINHDVRVSNNVTSCIK-----AHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 102 ~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 175 (335)
.+.++.+.+ +++++++.+. ++.+..+|.. ++.+...-. .+......+++.++|+++++...++.|..||.+
T Consensus 78 ~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 78 EMQTARILP-DGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp EEEEEEECT-TSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cccccEECC-CCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence 788889999 9999999887 7788888763 443332211 111234456778999999999999999999965
Q ss_pred CCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-------CcEeEEEeCCCCcee
Q 019847 176 MSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-------AQICGLEWNRHHKEI 248 (335)
Q Consensus 176 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 248 (335)
+ +.+..+... ..+.++...+++..+ +++. .++.|..+|..+|+.+.++... ..+..+...++|..+
T Consensus 155 G---~~~w~~~~~-~~~~~~~~~~~g~~~-v~~~--~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~ 227 (276)
T 3no2_A 155 G---QLLNSVKLS-GTPFSSAFLDNGDCL-VACG--DAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLY 227 (276)
T ss_dssp S---CEEEEEECS-SCCCEEEECTTSCEE-EECB--TTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEE
T ss_pred C---CEEEEEECC-CCccceeEcCCCCEE-EEeC--CCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEE
Confidence 3 334444433 445677888888644 4443 5778999999999999888642 126778888888877
Q ss_pred eee
Q 019847 249 LSG 251 (335)
Q Consensus 249 ~~~ 251 (335)
++.
T Consensus 228 v~~ 230 (276)
T 3no2_A 228 ICN 230 (276)
T ss_dssp EEE
T ss_pred EEe
Confidence 765
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-14 Score=119.61 Aligned_cols=227 Identities=9% Similarity=-0.033 Sum_probs=160.4
Q ss_pred CCCcEEEEeCCCceeEeeecc------cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEE
Q 019847 78 MDSKLQLWDAETSKLVRNLEG------HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLK 151 (335)
Q Consensus 78 ~dg~i~iw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~ 151 (335)
.++.|.++|.++++....+.. .......+.+. ++.++++...++.|.+||..+.+.+.. +. .......++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~-i~-~~~~p~~i~ 90 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGR-IT-GFTSPRYIH 90 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEE-EE-CCSSEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEE-cC-CCCCCcEEE
Confidence 378999999999987765421 22345667764 566777777789999999997765443 33 456789999
Q ss_pred eecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCC-----CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce
Q 019847 152 WSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHC-----GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC 226 (335)
Q Consensus 152 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 226 (335)
++++++.+++...++.|.+||+.+... ...+.... .....+++ ++..++++..+ .++.|.++|+++++.
T Consensus 91 ~~~~g~lyv~~~~~~~v~~iD~~t~~~---~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~-~~~~v~viD~~t~~~ 164 (328)
T 3dsm_A 91 FLSDEKAYVTQIWDYRIFIINPKTYEI---TGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWS-YQNRILKIDTETDKV 164 (328)
T ss_dssp EEETTEEEEEEBSCSEEEEEETTTTEE---EEEEECTTCCTTTCBCCCEEE--ETTEEEEEECT-TCCEEEEEETTTTEE
T ss_pred EeCCCeEEEEECCCCeEEEEECCCCeE---EEEEEcCCccccCCCcceEEE--ECCEEEEEcCC-CCCEEEEEECCCCeE
Confidence 999885555444789999999876432 22222111 14556777 34466666420 378999999999999
Q ss_pred EEEeecCCcEeEEEeCCCCceeeeeeeeee----ecCCCeEEEEECCCCceeecccCC-CCceeEeEEcCCCCEEEEEeC
Q 019847 227 IHGIDAKAQICGLEWNRHHKEILSGHGFSA----SGDGNKLCLWKYPNMTKVGELQSS-NSRILDLSQSPDGLTVATAGA 301 (335)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~ 301 (335)
+..+........+.++|+|+.+++...-.. ..+.+.|.++|..+++....+... ......++++|+++.|+++..
T Consensus 165 ~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 165 VDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp EEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred EEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 988887777789999999987665521000 000378999999998887666532 236789999999999888765
Q ss_pred CCcEEEEecCCCCCC
Q 019847 302 DETIRFWEAFGPSGD 316 (335)
Q Consensus 302 dg~v~iw~~~~~~~~ 316 (335)
.|.+||..+.+..
T Consensus 245 --~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 245 --DIWRMPVEADRVP 257 (328)
T ss_dssp --SEEEEETTCSSCC
T ss_pred --EEEEEECCCCcee
Confidence 8999999876653
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-15 Score=135.51 Aligned_cols=244 Identities=10% Similarity=0.057 Sum_probs=160.7
Q ss_pred ccceeeeecCC-ceEEEe------cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCc--------
Q 019847 17 YYSKVIDWGRN-NVLAVA------LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSK-------- 81 (335)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~------~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------- 81 (335)
..+..++|+++ +.++.+ .+..|++||+.+++......+... ....++|+|||+.|+.++.|..
T Consensus 121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDER 198 (695)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcc--cccceEEecCCCEEEEEEecCCCCCccccC
Confidence 45778899985 444432 135899999999986411122211 1267899999999999988776
Q ss_pred -----EEEEeCCCce----eEeeecccccceeEeeecCCCCCEEEEeeCCC----cEEEEecccCCeeeEEeecCCCCEE
Q 019847 82 -----LQLWDAETSK----LVRNLEGHHRRVATSSWNHWNGHILTSGSKDK----SIINHDVRVSNNVTSCIKAHSGEVC 148 (335)
Q Consensus 82 -----i~iw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~~~d~~~~~~~~~~~~~~~~~i~ 148 (335)
|++|++.+++ ++.....+...+..+.|+| +++.|+.++.++ .|.+++..++. ...+..+...+.
T Consensus 199 ~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~--~~~l~~~~~~~~ 275 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKD--FRLLVKGVGAKY 275 (695)
T ss_dssp GGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSS--CEEEEECSSCCE
T ss_pred CCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCc--eEEeecCCCceE
Confidence 9999998875 3334444556788999999 888887777655 67777654332 333445555566
Q ss_pred EEEeecCCCEEEEEe---CCCeEEEEEccCCCcccceeeccCC--CCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC-
Q 019847 149 GLKWSNEGNLLASGG---DDNVVRIWERSKMSSSKSLHRFTDH--CGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ- 222 (335)
Q Consensus 149 ~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~- 222 (335)
...+ +++.+++.+. .++.|.+||+.++... ....+..+ ...+..++|+ + ..++++.. .|+..++|.+.
T Consensus 276 ~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~l~~~~~~-~-~~lv~~~~--~dg~~~l~~~~~ 349 (695)
T 2bkl_A 276 EVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARA-SWKEIVPEDSSASLLSVSIV-G-GHLSLEYL--KDATSEVRVATL 349 (695)
T ss_dssp EEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGG-GCEEEECCCSSCEEEEEEEE-T-TEEEEEEE--ETTEEEEEEEET
T ss_pred EEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCcc-CCeEEecCCCCCeEEEEEEE-C-CEEEEEEE--ECCEEEEEEEeC
Confidence 6666 5566444443 2578999998764321 12222223 4457788887 3 35777765 78888777654
Q ss_pred CCceEEEeec--CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 223 KGTCIHGIDA--KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 223 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
+++....+.. ...+..+.++|++..++.. +.+....+.|++||+.+++.
T Consensus 350 ~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~--~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 350 KGKPVRTVQLPGVGAASNLMGLEDLDDAYYV--FTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp TCCEEEECCCSSSSEECCCBSCTTCSEEEEE--EEETTEEEEEEEEETTTCCE
T ss_pred CCCeeEEecCCCCeEEEEeecCCCCCEEEEE--EcCCCCCCEEEEEECCCCcE
Confidence 4555555554 3567788999999877754 22334568999999988764
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-13 Score=109.01 Aligned_cols=242 Identities=10% Similarity=0.022 Sum_probs=170.7
Q ss_pred EeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEe-eecccccceeEeeecCCCCCEEEEeeCCCcEEEEec
Q 019847 52 LQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR-NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 130 (335)
+.++.....+.++++.++|+..++...++.|.+||.. ++... .+......+..+++.+ +++++++...++.|..+|.
T Consensus 13 ~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~ 90 (300)
T 2qc5_A 13 FNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSK 90 (300)
T ss_dssp EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT
T ss_pred EecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC-CCCEEEEecCCCeEEEECC
Confidence 3444556678999999999877777678999999987 55433 2222346788999988 8888887777889999998
Q ss_pred ccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC
Q 019847 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210 (335)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 210 (335)
. +.............+..+++.++++++++...++.|..+|.. +.. . ..........+..+++.+++. ++++..
T Consensus 91 ~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~-~~~~~~~~~~~~~i~~d~~g~-l~v~~~- 164 (300)
T 2qc5_A 91 K-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI-Y-EYDLPNKGSYPAFITLGSDNA-LWFTEN- 164 (300)
T ss_dssp T-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-E-EEECSSTTCCEEEEEECTTSS-EEEEET-
T ss_pred C-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE-E-EccCCCCCCCceeEEECCCCC-EEEEec-
Confidence 7 443222222244678999999999888877768899999865 221 1 112222345688999999986 555543
Q ss_pred CCCCeEEEEECCCCceEEEeec---CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeec-ccCCCCceeE
Q 019847 211 REDGCIKIWNVQKGTCIHGIDA---KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE-LQSSNSRILD 286 (335)
Q Consensus 211 ~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~ 286 (335)
.++.|..+|. +++... +.. ...+..+++++++...++. ...+.|.+|+. +++.... ...+...+.+
T Consensus 165 -~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~------~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 234 (300)
T 2qc5_A 165 -QNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVE------IMGNKIGRITT-TGEISEYDIPTPNARPHA 234 (300)
T ss_dssp -TTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEE------TTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred -CCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEc------cCCCEEEEEcC-CCcEEEEECCCCCCCceE
Confidence 5788999998 555443 322 3458899999998766544 44678999998 4443322 3334556889
Q ss_pred eEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 287 LSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 287 ~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
++++++|+++++...++.|..|+..
T Consensus 235 i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 235 ITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp EEECSTTCEEEEETTTTEEEEECTT
T ss_pred EEECCCCCEEEeccCCCeEEEECCC
Confidence 9999999877776667899999874
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=3.3e-14 Score=116.99 Aligned_cols=278 Identities=11% Similarity=0.016 Sum_probs=183.7
Q ss_pred CCceEEEec-----CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE----------CCCcEEEEeCCCc
Q 019847 26 RNNVLAVAL-----GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY----------MDSKLQLWDAETS 90 (335)
Q Consensus 26 ~~~~~~~~~-----~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~ 90 (335)
...++++.. ++.|.+.|..+++....+... ..+ . ++++|||++++++. .++.|.+||..++
T Consensus 44 ~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG--~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~ 119 (386)
T 3sjl_D 44 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--FLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL 119 (386)
T ss_dssp TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC--SSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC--CCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence 345666553 579999999999987766542 223 4 99999999988775 3578999999999
Q ss_pred eeEeeecccc-------cceeEeeecCCCCCEEEEeeC--CCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEE
Q 019847 91 KLVRNLEGHH-------RRVATSSWNHWNGHILTSGSK--DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLAS 161 (335)
Q Consensus 91 ~~~~~~~~~~-------~~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 161 (335)
+.+..+.... .....+.++| +++.++++.. ++.|.++|+.+.+.. ..+.. .+ . ...+....+.+++
T Consensus 120 ~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv-~tI~v-~g-~-~~~~P~g~~~~~~ 194 (386)
T 3sjl_D 120 LPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFK-RMLDV-PD-C-YHIFPTAPDTFFM 194 (386)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEE-EEEEC-CS-E-EEEEEEETTEEEE
T ss_pred eEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEE-EEEEC-CC-c-ceeecCCCceeEE
Confidence 9888875321 2567899999 8988888764 689999999976653 33322 11 1 2223334567778
Q ss_pred EeCCCeEEEEEccCCCccccee--eccCCCCCee-EEEec-CCCCcEEEEecCCCCCeEEEEECCCCc--eEEEee----
Q 019847 162 GGDDNVVRIWERSKMSSSKSLH--RFTDHCGGVK-ALAWS-PHQVNVLATGGGREDGCIKIWNVQKGT--CIHGID---- 231 (335)
Q Consensus 162 ~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~v~-~~~~~-~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~---- 231 (335)
.+.||++.+.++.......... .+.....++. ...|. ++|..++ .. .+|.+++.|+.++. ....+.
T Consensus 195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs---~~g~V~v~d~~~~~~~v~~~~~~~~~ 270 (386)
T 3sjl_D 195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PT---YTGKIHQIDLSSGDAKFLPAVEALTE 270 (386)
T ss_dssp EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EB---TTSEEEEEECTTSSCEECCCEESSCH
T ss_pred ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-Ee---CCCEEEEEECCCCcceeecceecccc
Confidence 8889999888876522211111 1111112222 23554 6664444 33 57999999997654 333332
Q ss_pred -------cCCcEeEEEeCCCCceeeeeeeeee-e---cCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCC-EEEEE
Q 019847 232 -------AKAQICGLEWNRHHKEILSGHGFSA-S---GDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGL-TVATA 299 (335)
Q Consensus 232 -------~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 299 (335)
.......++++++++.++....--. + ...+.|.++|+.+++.+..+... .++.++++++|++ +|++.
T Consensus 271 ~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~t 349 (386)
T 3sjl_D 271 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYAL 349 (386)
T ss_dssp HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEE
T ss_pred ccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEE
Confidence 0123345777899888876521000 0 01367999999999999887643 3678999999996 66665
Q ss_pred -eCCCcEEEEecCCCCCCC
Q 019847 300 -GADETIRFWEAFGPSGDE 317 (335)
Q Consensus 300 -~~dg~v~iw~~~~~~~~~ 317 (335)
..++.|.++|..+.+...
T Consensus 350 n~~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 350 STGDKTLYIHDAESGEELR 368 (386)
T ss_dssp ETTTTEEEEEETTTCCEEE
T ss_pred cCCCCeEEEEECCCCcEEE
Confidence 458999999999876543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.71 E-value=6e-14 Score=118.41 Aligned_cols=238 Identities=11% Similarity=0.052 Sum_probs=164.6
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCC--cEEEEecccCCee
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK--SIINHDVRVSNNV 136 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~ 136 (335)
..+..++|+++++++++...++.|++||..+++....... ..... ++|++ +++.|+++..++ .|.+++.......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 3578999999999777777789999999988776655443 23334 99999 888888888766 7888888755432
Q ss_pred eEEe----ecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceee--ccCCCCCe--eEEEecCCCCcEEEEe
Q 019847 137 TSCI----KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHR--FTDHCGGV--KALAWSPHQVNVLATG 208 (335)
Q Consensus 137 ~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~v--~~~~~~~~~~~~~~~~ 208 (335)
..+ ......+.+++++|++..|+.+..++.|+.||...... ..+.. ..++...- ..++|+|++..++++.
T Consensus 208 -~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 208 -TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp -EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred -EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-EEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence 222 21445678899999555566677788999999875421 11110 11222222 3899999766788876
Q ss_pred cCCCCCeEEEEECCCCceEEEeecC---------------CcEeEEEeCCCCceeeeeeeeeeec-CCCeEEEEECCCCc
Q 019847 209 GGREDGCIKIWNVQKGTCIHGIDAK---------------AQICGLEWNRHHKEILSGHGFSASG-DGNKLCLWKYPNMT 272 (335)
Q Consensus 209 ~g~~d~~i~i~d~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~d~~~~~ 272 (335)
. .++.|+.|+.... ........ .....++++|+|...++- . .++.|+.|++.+++
T Consensus 286 ~--~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad------~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 286 Q--NLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVD------GFKGYCLRKLDILDGY 356 (409)
T ss_dssp T--TTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEE------TTTTCEEEEEETTTTE
T ss_pred C--CCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEe------CCCCCEEEEEECCCCE
Confidence 6 7899999997643 22221111 247889999999855544 5 68899999987765
Q ss_pred eeecccCC---------------CCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 273 KVGELQSS---------------NSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 273 ~~~~~~~~---------------~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
.. .+.++ -.....+++++++.++++-..+++|+.++++
T Consensus 357 v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 357 VS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred EE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 43 32222 2357899999999888888888899888753
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=4.9e-14 Score=116.01 Aligned_cols=259 Identities=11% Similarity=0.061 Sum_probs=177.5
Q ss_pred eeecCC--ceEEEe----------cCCeEEEEEecCCceeeEEeecCC-----CCCceEEEEcCCCCEEEEEEC--CCcE
Q 019847 22 IDWGRN--NVLAVA----------LGPVLFLWKWENGKVKKLLQVPGE-----DDYPTSVSWSHDAKTLAVGYM--DSKL 82 (335)
Q Consensus 22 ~~~~~~--~~~~~~----------~~~~i~vw~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--dg~i 82 (335)
+.++++ .++++. .++.|.+||..+.+....+.+... ......++|+|||++++++.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 666663 455544 257899999999998777766431 235678999999999998864 6899
Q ss_pred EEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC----CCCEE-EEEee-cCC
Q 019847 83 QLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH----SGEVC-GLKWS-NEG 156 (335)
Q Consensus 83 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----~~~i~-~~~~~-~~~ 156 (335)
.++|+.+++.+..+.... . ...+ |...+.+++.+.||.+.+.++.....+......+ ..++. ...|. ++|
T Consensus 163 sVID~~t~~vv~tI~v~g-~--~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG 238 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDVPD-C--YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG 238 (386)
T ss_dssp EEEETTTTEEEEEEECCS-E--EEEE-EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred EEEECCCCcEEEEEECCC-c--ceee-cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence 999999999998885322 1 2223 4366778888899999999987633332211111 11221 23554 566
Q ss_pred CEEEEEeCCCeEEEEEccCCCcccceeecc----------CCCCCeeEEEecCCCCcEEEEecC----C---CCCeEEEE
Q 019847 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFT----------DHCGGVKALAWSPHQVNVLATGGG----R---EDGCIKIW 219 (335)
Q Consensus 157 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~g----~---~d~~i~i~ 219 (335)
++++ .+.+|.|++.|+..... +....+. -..+....+.++|+++.++++... + ..+.|.++
T Consensus 239 ~~~~-vs~~g~V~v~d~~~~~~-~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~vi 316 (386)
T 3sjl_D 239 RLVW-PTYTGKIHQIDLSSGDA-KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL 316 (386)
T ss_dssp EEEE-EBTTSEEEEEECTTSSC-EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred cEEE-EeCCCEEEEEECCCCcc-eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEE
Confidence 5444 56689999999865321 1121111 012334457789999888886420 0 12579999
Q ss_pred ECCCCceEEEeecCCcEeEEEeCCCCc-eeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCC
Q 019847 220 NVQKGTCIHGIDAKAQICGLEWNRHHK-EILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
|+.+++.+..+....++..+.++++++ .+++.. ..++.|.++|..+++.+.++..... -+.|.+++|
T Consensus 317 D~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn-----~~~~~VsViD~~t~k~~~~i~~~~~-p~~l~~s~d 384 (386)
T 3sjl_D 317 DAKTGERLAKFEMGHEIDSINVSQDEKPLLYALS-----TGDKTLYIHDAESGEELRSVNQLGH-GPQVITTAD 384 (386)
T ss_dssp ETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEE-----TTTTEEEEEETTTCCEEEEECCCCS-SCCEEEECC
T ss_pred ECCCCeEEEEEECCCCcceEEECCCCCeEEEEEc-----CCCCeEEEEECCCCcEEEEecCCCC-CceeEECCc
Confidence 999999999999888999999999997 555542 5689999999999999988865432 355666665
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-14 Score=132.00 Aligned_cols=244 Identities=10% Similarity=0.034 Sum_probs=160.0
Q ss_pred ccceeeeecCC-ceEEEe-cC-----CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCc--------
Q 019847 17 YYSKVIDWGRN-NVLAVA-LG-----PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSK-------- 81 (335)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~-~~-----~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------- 81 (335)
..+..++|+++ +.++.+ .+ ..|++||+++++.... .. +...+..++|+|| +.|+.++.++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-EL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EE--EEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cC--CCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 35678899985 444443 22 3699999999987543 11 1122357899999 99998886654
Q ss_pred ------EEEEeCCCce----eEeeecccccceeEeeecCCCCCEEEEeeCCC-----cEEEEecccCCee-eEEeecCCC
Q 019847 82 ------LQLWDAETSK----LVRNLEGHHRRVATSSWNHWNGHILTSGSKDK-----SIINHDVRVSNNV-TSCIKAHSG 145 (335)
Q Consensus 82 ------i~iw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~-~~~~~~~~~ 145 (335)
|++|++.++. .+.....+...+..+.|+| +++.|+..+.++ .|++||+.++... ...+..+..
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 317 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK 317 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence 8999997765 2322233334588999999 888887776543 8999999865222 333444554
Q ss_pred CEEEEEeecCCCEEEEEeCC----CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEEC
Q 019847 146 EVCGLKWSNEGNLLASGGDD----NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV 221 (335)
Q Consensus 146 ~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 221 (335)
.+... ++|+++.|+..+.+ +.|.+||+..+. ......+..+...+..+.++ +..++++.. .|+..++|.+
T Consensus 318 ~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~--~dg~~~l~~~ 391 (741)
T 1yr2_A 318 AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA--GNRLFASYI--HDAKSQVLAF 391 (741)
T ss_dssp SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE--BTEEEEEEE--ETTEEEEEEE
T ss_pred ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE--CCEEEEEEE--ECCEEEEEEE
Confidence 45444 34888888887764 459999987642 11122223344456677776 446777765 7887776654
Q ss_pred C-CCceEEEeec--CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 222 Q-KGTCIHGIDA--KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 222 ~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
. +++....+.. ...+..+.++|++..++.. +.+....+.+++||+.+++.
T Consensus 392 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~--~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 392 DLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLS--FSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp ETTSCEEEECBCSSSCEEEEEECCBTCSCEEEE--EEETTEEEEEEEEETTTTEE
T ss_pred eCCCCceeeccCCCCeEEEEeecCCCCCEEEEE--EcCCCCCCEEEEEECCCCcE
Confidence 3 4556666653 4568889999999877654 22234568999999988763
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.4e-13 Score=109.88 Aligned_cols=245 Identities=6% Similarity=-0.055 Sum_probs=166.9
Q ss_pred eeeecCC--ceEEEe----------cCCeEEEEEecCCceeeEEeecC--C---CCCceEEEEcCCCCEEEEEEC--CCc
Q 019847 21 VIDWGRN--NVLAVA----------LGPVLFLWKWENGKVKKLLQVPG--E---DDYPTSVSWSHDAKTLAVGYM--DSK 81 (335)
Q Consensus 21 ~~~~~~~--~~~~~~----------~~~~i~vw~~~~~~~~~~~~~~~--~---~~~v~~~~~~~~~~~l~~~~~--dg~ 81 (335)
.+.++++ .++++. .++.|.+||..+.+....+.+.+ + ......++|+|||++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 5777774 344443 25789999999888766665531 0 134568999999999999874 478
Q ss_pred EEEEeCCCceeEee-ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEe----ecCCCCE-EEEEeecC
Q 019847 82 LQLWDAETSKLVRN-LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI----KAHSGEV-CGLKWSNE 155 (335)
Q Consensus 82 i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~~i-~~~~~~~~ 155 (335)
|.++| .+++.+.. +... .. +.+.|.....+++.+.||.+.++|. +++...... .....++ ....+.++
T Consensus 150 v~viD-~t~~~~~~~i~~~-~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~ 223 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP-TC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK 223 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC-ce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence 99999 99998877 6532 22 3444535567778888999999999 665432211 0111221 23456676
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcccceeeccC----------CCCCeeEEEecCCCCcEEEEecCC-------CCCeEEE
Q 019847 156 GNLLASGGDDNVVRIWERSKMSSSKSLHRFTD----------HCGGVKALAWSPHQVNVLATGGGR-------EDGCIKI 218 (335)
Q Consensus 156 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~g~-------~d~~i~i 218 (335)
+..++..+.++.+.+.|+..... ..+..+.- .......+.++|+++.++++.... ..+.|.+
T Consensus 224 ~~~~~~~~~~~~v~vid~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V 302 (373)
T 2mad_H 224 SGRIVWPVYSGKILQADISAAGA-TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred CCEEEEEcCCceEEEEeccCCcc-eEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence 65555555788999999864321 11121110 122344578999998888765200 1358999
Q ss_pred EECCCCceEEEeecCCcEeEEEeCCCCc-eeeeeeeeeeecCCCeEEEEECCCCceeecc
Q 019847 219 WNVQKGTCIHGIDAKAQICGLEWNRHHK-EILSGHGFSASGDGNKLCLWKYPNMTKVGEL 277 (335)
Q Consensus 219 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 277 (335)
+|+.+++.+..+........+.|+|+|+ .++++. ..++.|.++|..+++.+.++
T Consensus 303 ID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~-----~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 303 VTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALS-----AGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEc-----CCCCeEEEEECCCCCEEeee
Confidence 9999999999998888899999999999 565542 35899999999999998774
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.68 E-value=8e-14 Score=116.77 Aligned_cols=280 Identities=9% Similarity=-0.007 Sum_probs=187.5
Q ss_pred cCCceEEEecC-----CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE----------CCCcEEEEeCCC
Q 019847 25 GRNNVLAVALG-----PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY----------MDSKLQLWDAET 89 (335)
Q Consensus 25 ~~~~~~~~~~~-----~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~ 89 (335)
.+..+++.... +.|.++|..+++....+.... .+ .++++||+++++++. .++.|.++|..+
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~--~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF--LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS--SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC--CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 33455555432 699999999999887776532 33 899999999998876 367899999999
Q ss_pred ceeEeeeccc-------ccceeEeeecCCCCCEEEEeeC--CCcEEEEecccCCeeeEEeecCCCCEEEEEeecC-CCEE
Q 019847 90 SKLVRNLEGH-------HRRVATSSWNHWNGHILTSGSK--DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNE-GNLL 159 (335)
Q Consensus 90 ~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l 159 (335)
++.+..+... ......+.++| ++++++++.. ++.|.+.|+.+.+.... +.- .+ . ....|+ .+.+
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~-I~v-~g-~--~~~~p~g~~~~ 232 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRM-LDV-PD-C--YHIFPASPTVF 232 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEE-EEC-CS-E--EEEEEEETTEE
T ss_pred CcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEE-EEc-CC-c--eeeccCCCcEE
Confidence 9988877532 23467889999 8988888764 57899999987665333 332 11 1 223343 3566
Q ss_pred EEEeCCCeEEEEEccCCCcccce-eeccCCCCCe-eEEEecCCCCcEEEEecCCCCCeEEEEECCCCceE--EEeec---
Q 019847 160 ASGGDDNVVRIWERSKMSSSKSL-HRFTDHCGGV-KALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI--HGIDA--- 232 (335)
Q Consensus 160 ~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~v-~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~--- 232 (335)
++.+.||.+.+.++......... ..+.....++ ..+.+.+++..++.+. ..+.+.+.|+...... ..+..
T Consensus 233 v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s---~~g~V~ViD~~~~~~~v~~~~~~~~~ 309 (426)
T 3c75_H 233 YMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT---YTGKIFQADLTAEGATFRAPIEALTE 309 (426)
T ss_dssp EEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB---TTSEEEEEEECSSCEEECCCEESSCT
T ss_pred EEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe---CCCcEEEEeccCCceEEeeeeeeccc
Confidence 66777888887776332211000 1111111221 2356788888777775 5789999998765422 11111
Q ss_pred --------CCcEeEEEeCCCCceeeeeeeeee-e---cCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCC-EEEEE
Q 019847 233 --------KAQICGLEWNRHHKEILSGHGFSA-S---GDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGL-TVATA 299 (335)
Q Consensus 233 --------~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 299 (335)
......+.++|+++.+++...-.. + ..++.|.++|..+.+.+.++.... ....++|+|||+ ++++.
T Consensus 310 ~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~ 388 (426)
T 3c75_H 310 AERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYAL 388 (426)
T ss_dssp TTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEE
T ss_pred cccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEE
Confidence 111223788999888776531000 0 014689999999999999886433 478999999999 88888
Q ss_pred e-CCCcEEEEecCCCCCCCC
Q 019847 300 G-ADETIRFWEAFGPSGDED 318 (335)
Q Consensus 300 ~-~dg~v~iw~~~~~~~~~~ 318 (335)
. .++.|.++|+.+.+....
T Consensus 389 n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 389 SAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp ETTTTEEEEEETTTCCEEEE
T ss_pred cCCCCeEEEEECCCCCEEEE
Confidence 7 589999999998876544
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.66 E-value=4.7e-13 Score=108.25 Aligned_cols=226 Identities=10% Similarity=0.099 Sum_probs=153.6
Q ss_pred CCCceEEEEcCCCC-EEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee
Q 019847 58 DDYPTSVSWSHDAK-TLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV 136 (335)
Q Consensus 58 ~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 136 (335)
..-.-+..|+|++. ++++...++.|..||..+++. ..+. ....+.++++++ +++++++ . ++.|.+||..++..
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~- 85 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSA- 85 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEE-
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcE-
Confidence 34456889999655 455555788999999988765 2332 456789999999 8885554 4 56899999875442
Q ss_pred eEEeec----CCCCEEEEEeecCCCEEEEEeCC---------CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCc
Q 019847 137 TSCIKA----HSGEVCGLKWSNEGNLLASGGDD---------NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203 (335)
Q Consensus 137 ~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 203 (335)
...... ....+..++++|+|+++++...+ ..-.+|.+..... ...........+.++|+|+++.
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~---~~~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH---VKKYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC---EEEEEEEESBEEEEEECTTSCE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC---EEEEeeccccccceEEcCCCCE
Confidence 222211 12347889999999977655322 2234555442211 1112223344678999999988
Q ss_pred EEEEecCCCCCeEEEEEC--CCCceE-----EEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceee
Q 019847 204 VLATGGGREDGCIKIWNV--QKGTCI-----HGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVG 275 (335)
Q Consensus 204 ~~~~~~g~~d~~i~i~d~--~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~ 275 (335)
++++.+ .++.|.+||+ .++... ..+. .......++++++|...++. ..++.|..||..+++.+.
T Consensus 163 lyv~~~--~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~------~~~~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 163 FYYIDS--LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVAC------YNGGRVIRLDPVTGKRLQ 234 (297)
T ss_dssp EEEEEG--GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEE------ETTTEEEEECTTTCCEEE
T ss_pred EEEecC--CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEE------cCCCEEEEEcCCCceEEE
Confidence 877765 6889999987 455432 1222 13467889999999766654 347889999999999988
Q ss_pred cccCCCCceeEeEEc-CCCCEEEEEe
Q 019847 276 ELQSSNSRILDLSQS-PDGLTVATAG 300 (335)
Q Consensus 276 ~~~~~~~~i~~~~~~-~~~~~l~~~~ 300 (335)
.+..+...+++++|. |+++.|+.++
T Consensus 235 ~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 235 TVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred EEECCCCCceEEEEeCCCCCEEEEEc
Confidence 888777789999998 8877665554
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.66 E-value=5.8e-13 Score=108.57 Aligned_cols=238 Identities=11% Similarity=0.159 Sum_probs=159.7
Q ss_pred ceeeeecC-CceEEE--------ecCCeEEEEEecCCceeeEEe--ecCCCCCceEEEEcCC-CCEEEEEECCCcEEEEe
Q 019847 19 SKVIDWGR-NNVLAV--------ALGPVLFLWKWENGKVKKLLQ--VPGEDDYPTSVSWSHD-AKTLAVGYMDSKLQLWD 86 (335)
Q Consensus 19 ~~~~~~~~-~~~~~~--------~~~~~i~vw~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~ 86 (335)
...++|++ +.++++ ..++.|.+||..+++...... ..++...+.+++++++ +++++ ++..+.|.+||
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l~~~d 98 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGLLVVQ 98 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEEEEEE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCEEEEe
Confidence 45688876 456666 568899999988887643321 0124467899999999 65444 44455799999
Q ss_pred CCCceeEee-ecc----cccceeEeeecCCCCCEEEEeeCC---------------CcEEEEecccCCeeeEEeecCCCC
Q 019847 87 AETSKLVRN-LEG----HHRRVATSSWNHWNGHILTSGSKD---------------KSIINHDVRVSNNVTSCIKAHSGE 146 (335)
Q Consensus 87 ~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~l~~~~~d---------------g~i~~~d~~~~~~~~~~~~~~~~~ 146 (335)
.+ ++.... ... ....+.++++.+ +++++++...+ +.|..++.. +. ... +..+...
T Consensus 99 ~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~-~~~~~~~ 173 (314)
T 1pjx_A 99 TD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQ-VDTAFQF 173 (314)
T ss_dssp TT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEE-EEEEESS
T ss_pred CC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EEE-eccCCCC
Confidence 88 665433 221 124588999998 88888777655 567777754 32 222 2233445
Q ss_pred EEEEEee----cCCCEEEEE-eCCCeEEEEEccC-CCc--ccceeeccCCC-CCeeEEEecCCCCcEEEEecCCCCCeEE
Q 019847 147 VCGLKWS----NEGNLLASG-GDDNVVRIWERSK-MSS--SKSLHRFTDHC-GGVKALAWSPHQVNVLATGGGREDGCIK 217 (335)
Q Consensus 147 i~~~~~~----~~~~~l~~~-~~dg~i~iwd~~~-~~~--~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (335)
...++++ |+++.++.+ ..++.|.+||++. +.. ......+..+. ..+..++++++|. ++++.. .++.|.
T Consensus 174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~--~~~~i~ 250 (314)
T 1pjx_A 174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANW--GSSHIE 250 (314)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEE--TTTEEE
T ss_pred cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEc--CCCEEE
Confidence 6889999 998765555 4678999999762 211 11223333333 5678899999985 555443 578999
Q ss_pred EEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC
Q 019847 218 IWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 218 i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
+||.++++.+..+..+ ..+.+++++|+++.+..+. ..++.|..|++..
T Consensus 251 ~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~-----~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE-----HENNAVWKFEWQR 299 (314)
T ss_dssp EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEE-----TTTTEEEEEECSS
T ss_pred EEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEe-----CCCCeEEEEeCCC
Confidence 9999877776666654 6789999999998665442 4567999999864
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.9e-15 Score=122.38 Aligned_cols=175 Identities=13% Similarity=0.042 Sum_probs=128.9
Q ss_pred cceeeeecCC-ceEEEecCCeEEEEEecCCc---------eeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeC
Q 019847 18 YSKVIDWGRN-NVLAVALGPVLFLWKWENGK---------VKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDA 87 (335)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 87 (335)
.++.+++++. ++++++....+.+|+++..+ ..+.... .+.. |+.++| ++++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 4778888874 56666666688889976443 2221222 2455 999999 99999999 8899999999
Q ss_pred CCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCe
Q 019847 88 ETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNV 167 (335)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 167 (335)
.+.........+..++.++.+.+. .+++++.||.+.+||+.+... .. +...|++++|+|+| ++.|..||+
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~-~~----~~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKST-KQ----LAQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCE-EE----EEESEEEEEECSSE--EEEEETTSC
T ss_pred hhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCcc-cc----ccCCceEEEEcCCc--eEEEEcCCc
Confidence 877666666677788888888762 288899999999999986554 22 34589999999999 778999999
Q ss_pred EEEEEccCCCcccceeec------c---CCCCCeeEEEecCCCCcEEEEe
Q 019847 168 VRIWERSKMSSSKSLHRF------T---DHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 168 i~iwd~~~~~~~~~~~~~------~---~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
+++|+....... ....+ . +|...|.++.|.+++.++++-.
T Consensus 184 i~~~~~~~~~~~-~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 184 FQSFAWRNGEME-KQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEEETTEEE-EEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEEcCCCcccc-ccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 999987654310 01122 2 3678899999999886665543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.7e-14 Score=126.42 Aligned_cols=245 Identities=11% Similarity=0.093 Sum_probs=159.3
Q ss_pred CCCCCceEEEEcCCCCEEEEEE-----CCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCC-------
Q 019847 56 GEDDYPTSVSWSHDAKTLAVGY-----MDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK------- 123 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------- 123 (335)
+|...+..++|||||++||.+. ....|++||+.+++.+.... .......++|+ +++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL--GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE--TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe--CCCEEEEEEecCccccccc
Confidence 3556788899999999998653 22579999999998655311 11124678898 666666666653
Q ss_pred ------cEEEEecccCCe---eeEEeec-CCCCEEEEEeecCCCEEEEEeC----CCeEEEEEccCCCcccceeeccCCC
Q 019847 124 ------SIINHDVRVSNN---VTSCIKA-HSGEVCGLKWSNEGNLLASGGD----DNVVRIWERSKMSSSKSLHRFTDHC 189 (335)
Q Consensus 124 ------~i~~~d~~~~~~---~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~ 189 (335)
.|++|++.+... ++..... |......+.|+||+++|+.... +..|+++|+..+.. ....+..+.
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~--~~~~l~~~~ 280 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA--PLLTVQGDL 280 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC--CCEEEECSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC--ceEEEeCCC
Confidence 499999876543 2222222 3455788999999998866543 24899999876431 233344455
Q ss_pred CCeeEEEecCCCCcEEEEecC-CCCCeEEEEECCCCce--EEEe-ecCCcEeEEEeCCCCceeeeeeeeeeecCCC--eE
Q 019847 190 GGVKALAWSPHQVNVLATGGG-REDGCIKIWNVQKGTC--IHGI-DAKAQICGLEWNRHHKEILSGHGFSASGDGN--KL 263 (335)
Q Consensus 190 ~~v~~~~~~~~~~~~~~~~~g-~~d~~i~i~d~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i 263 (335)
...... +++++..+++.... ...+.|..+|+.++.. ...+ .+...+. .|+++++.++... ..++ .|
T Consensus 281 ~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~-----~~~g~~~l 352 (693)
T 3iuj_A 281 DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEY-----MVDATARV 352 (693)
T ss_dssp SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEE-----EETTEEEE
T ss_pred CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEE-----EECCeeEE
Confidence 555444 67777777776541 1246899999988654 2233 3333333 8899998887653 2233 68
Q ss_pred EEEECCCCceeeccc-CCCCceeEeEEcCCCCEEEEEeCC----CcEEEEecCCCC
Q 019847 264 CLWKYPNMTKVGELQ-SSNSRILDLSQSPDGLTVATAGAD----ETIRFWEAFGPS 314 (335)
Q Consensus 264 ~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d----g~v~iw~~~~~~ 314 (335)
++|++..+. ...+. ...+.+..+.+++++..|+....+ +.+..||+.+++
T Consensus 353 ~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 353 EQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 899987544 33333 344567788889888777655444 789999987653
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-14 Score=118.32 Aligned_cols=173 Identities=8% Similarity=0.038 Sum_probs=129.2
Q ss_pred ceeEeeecCCCCCEEEEeeCCCcEEEEecccCC---------eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE
Q 019847 102 RVATSSWNHWNGHILTSGSKDKSIINHDVRVSN---------NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172 (335)
Q Consensus 102 ~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 172 (335)
++..+++++ ...++++|+.++ +.+|++.... ........+.. |+.++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688999999 888999999875 5559875432 01112234666 999999 88999999 789999999
Q ss_pred ccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeee
Q 019847 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGH 252 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (335)
+++..... ....+..++.++.+.+.. +++.. .||.+.+||+.+++... ....+.+++|+|+| ++.|
T Consensus 113 v~sl~~~~---~~~~~~~~v~~i~~~~p~--~av~~---~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg- 178 (388)
T 1xip_A 113 LEELSEFR---TVTSFEKPVFQLKNVNNT--LVILN---SVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVL- 178 (388)
T ss_dssp SSSTTCEE---EEEECSSCEEEEEECSSE--EEEEE---TTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEE-
T ss_pred chhhhccC---ccceeecceeeEEecCCC--EEEEE---CCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEE-
Confidence 88765333 334466778888777653 44443 79999999999887653 34589999999999 3444
Q ss_pred eeeeecCCCeEEEEECCCCce--eecc------c---CCCCceeEeEEcCCCCEEEEE
Q 019847 253 GFSASGDGNKLCLWKYPNMTK--VGEL------Q---SSNSRILDLSQSPDGLTVATA 299 (335)
Q Consensus 253 ~~~~~~~~~~i~i~d~~~~~~--~~~~------~---~~~~~i~~~~~~~~~~~l~~~ 299 (335)
..||.+++|+....+. ..++ . +|...|.++.|.+++.++++-
T Consensus 179 -----~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 179 -----LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp -----ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred -----EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 4599999998877664 4444 2 367889999999999988874
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-12 Score=105.94 Aligned_cols=220 Identities=7% Similarity=0.001 Sum_probs=147.8
Q ss_pred ceEEEEcCCCC-EEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE
Q 019847 61 PTSVSWSHDAK-TLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC 139 (335)
Q Consensus 61 v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 139 (335)
..+..|+|++. ++++...++.|..||..+++.. .+. ....+.++.+++ +++++++. .+ .|.+||..++.. ...
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~-~~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVL-TLH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCE-EEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcE-EEE
Confidence 46788999755 4555557889999999887643 232 346789999998 78777654 44 499999876553 222
Q ss_pred eec---C-CCCEEEEEeecCCCEEEEEeC------CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEec
Q 019847 140 IKA---H-SGEVCGLKWSNEGNLLASGGD------DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 140 ~~~---~-~~~i~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
... . ...+..++++|+|+++++... .+.|..++ .+ . +..+.........++|+|+++.++++..
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~---~~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-K---VTKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-E---EEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-c---EEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 111 1 235889999999997765542 24555555 22 1 1222222334678999999987777765
Q ss_pred CCCCCeEEEEECC--CC-ce-----EEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC
Q 019847 210 GREDGCIKIWNVQ--KG-TC-----IHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 210 g~~d~~i~i~d~~--~~-~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 280 (335)
.++.|.+||+. ++ +. ...+. .......++++++|...++. ..++.|..||. +++.+..+..+
T Consensus 199 --~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~------~~~~~v~~~d~-~g~~~~~i~~~ 269 (326)
T 2ghs_A 199 --KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR------WGEGAVDRYDT-DGNHIARYEVP 269 (326)
T ss_dssp --TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE------ETTTEEEEECT-TCCEEEEEECS
T ss_pred --CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEE------eCCCEEEEECC-CCCEEEEEECC
Confidence 67899999986 55 32 22222 23456789999999766654 34678999998 67777777766
Q ss_pred CCceeEeEEc-CCCCEEEEEeC
Q 019847 281 NSRILDLSQS-PDGLTVATAGA 301 (335)
Q Consensus 281 ~~~i~~~~~~-~~~~~l~~~~~ 301 (335)
...+++++|+ ++++.|+.++.
T Consensus 270 ~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 270 GKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CSBEEEEEEESTTSCEEEEEEB
T ss_pred CCCcEEEEEecCCCCEEEEEec
Confidence 6679999998 88776655543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.5e-13 Score=111.73 Aligned_cols=247 Identities=9% Similarity=0.026 Sum_probs=170.5
Q ss_pred eeeecCC--ceEEEe----------cCCeEEEEEecCCceeeEEeecCC-----CCCceEEEEcCCCCEEEEEEC--CCc
Q 019847 21 VIDWGRN--NVLAVA----------LGPVLFLWKWENGKVKKLLQVPGE-----DDYPTSVSWSHDAKTLAVGYM--DSK 81 (335)
Q Consensus 21 ~~~~~~~--~~~~~~----------~~~~i~vw~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--dg~ 81 (335)
.+.++++ .++++. .++.|.++|..+++....+.+.+. ......++|+|||++++++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 4666763 455554 367899999999998777766411 234678999999999999874 578
Q ss_pred EEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE---EeecCCCCE-EEEEeecCCC
Q 019847 82 LQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS---CIKAHSGEV-CGLKWSNEGN 157 (335)
Q Consensus 82 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~---~~~~~~~~i-~~~~~~~~~~ 157 (335)
|.+.|+.+++.+..+..... ....|.....+++.+.||.+.+.+...++.... .+.....++ ..+.+.+++.
T Consensus 202 VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~ 277 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG 277 (426)
T ss_dssp EEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC
T ss_pred EEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC
Confidence 99999999999888764221 223332446677777888888888843332211 111111111 2356788888
Q ss_pred EEEEEeCCCeEEEEEccCCCcccceeecc----------CCCCCeeEEEecCCCCcEEEEecC----C---CCCeEEEEE
Q 019847 158 LLASGGDDNVVRIWERSKMSSSKSLHRFT----------DHCGGVKALAWSPHQVNVLATGGG----R---EDGCIKIWN 220 (335)
Q Consensus 158 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~g----~---~d~~i~i~d 220 (335)
.++..+..+.+.+.|+..... ..+..+. ........+.++|++++++++... + .++.|.++|
T Consensus 278 ~~~~~s~~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID 356 (426)
T 3c75_H 278 RLVWPTYTGKIFQADLTAEGA-TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN 356 (426)
T ss_dssp EEEEEBTTSEEEEEEECSSCE-EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred EEEEEeCCCcEEEEeccCCce-EEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence 888888889999999864321 1111100 011222347899999888887420 0 135799999
Q ss_pred CCCCceEEEeecCCcEeEEEeCCCCc-eeeeeeeeeeecCCCeEEEEECCCCceeecc
Q 019847 221 VQKGTCIHGIDAKAQICGLEWNRHHK-EILSGHGFSASGDGNKLCLWKYPNMTKVGEL 277 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 277 (335)
+.+.+.+..+........+.|+|+++ .+++.. ..++.|.++|..+++.+.++
T Consensus 357 ~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n-----~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 357 AETGERINKIELGHEIDSINVSQDAEPLLYALS-----AGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TTTCCEEEEEEEEEEECEEEECCSSSCEEEEEE-----TTTTEEEEEETTTCCEEEEE
T ss_pred CCCCeEEEEEECCCCcCeEEEccCCCEEEEEEc-----CCCCeEEEEECCCCCEEEEe
Confidence 99999999999888899999999999 776653 45899999999999999886
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.59 E-value=6.1e-12 Score=101.73 Aligned_cols=222 Identities=11% Similarity=0.103 Sum_probs=149.3
Q ss_pred ceeeeecC--CceEEEe-cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee
Q 019847 19 SKVIDWGR--NNVLAVA-LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN 95 (335)
Q Consensus 19 ~~~~~~~~--~~~~~~~-~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 95 (335)
.....|++ +.++.+. .++.|+.||.++++.. .+. ....+.+++++|+|+++++ . ++.|.+||.++++....
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~---~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT---MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE---CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe---CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEE
Confidence 34577876 4455554 5789999999887753 233 2457899999999995554 4 56799999988765433
Q ss_pred ecc----cccceeEeeecCCCCCEEEEeeCC---------CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEE-
Q 019847 96 LEG----HHRRVATSSWNHWNGHILTSGSKD---------KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLAS- 161 (335)
Q Consensus 96 ~~~----~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~- 161 (335)
... ....+..+++.| +++++++.... ..-.+|.+........ ..........++|+|+++.|+.
T Consensus 89 ~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~ 166 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYI 166 (297)
T ss_dssp EECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEE
T ss_pred EecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEEe
Confidence 221 124578899999 88877654322 2345555543333222 2233445688999999987654
Q ss_pred EeCCCeEEEEEcc--CCCc--ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcE
Q 019847 162 GGDDNVVRIWERS--KMSS--SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQI 236 (335)
Q Consensus 162 ~~~dg~i~iwd~~--~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~ 236 (335)
.+.++.|.+||+. ++.. .+.+..+..+...+..++++++|. +.++.. ..+.|..||..+++.+..+..+ ..+
T Consensus 167 ~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~--~~~~v~~~d~~tG~~~~~i~~p~~~~ 243 (297)
T 3g4e_A 167 DSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACY--NGGRVIRLDPVTGKRLQTVKLPVDKT 243 (297)
T ss_dssp EGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEE--TTTEEEEECTTTCCEEEEEECSSSBE
T ss_pred cCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEc--CCCEEEEEcCCCceEEEEEECCCCCc
Confidence 4557899999974 2211 112223333345678999999995 555543 5788999999999999888876 579
Q ss_pred eEEEeC-CCCceeeee
Q 019847 237 CGLEWN-RHHKEILSG 251 (335)
Q Consensus 237 ~~~~~~-~~~~~~~~~ 251 (335)
++++|. |+++.|++.
T Consensus 244 t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 244 TSCCFGGKNYSEMYVT 259 (297)
T ss_dssp EEEEEESGGGCEEEEE
T ss_pred eEEEEeCCCCCEEEEE
Confidence 999998 888777654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-12 Score=104.78 Aligned_cols=227 Identities=10% Similarity=0.128 Sum_probs=152.5
Q ss_pred CCCCceEEEEcCCCC-EEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe
Q 019847 57 EDDYPTSVSWSHDAK-TLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN 135 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 135 (335)
.........|+|+++ +++++..++.|..|+. +++ ...+..+...+..+.+.+ +++++++...++.|..|+.. +..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~ 118 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQA 118 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC-CCE
Confidence 445567899999998 5566667889999997 454 344555667789999999 88877766666889999975 332
Q ss_pred eeEEeecC----CCCEEEEEeecCCCEEEE----EeC-------------CCeEEEEEccCCCcccceeeccCCCCCeeE
Q 019847 136 VTSCIKAH----SGEVCGLKWSNEGNLLAS----GGD-------------DNVVRIWERSKMSSSKSLHRFTDHCGGVKA 194 (335)
Q Consensus 136 ~~~~~~~~----~~~i~~~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 194 (335)
....... ...+..+++.|+|+++++ |.. .+.|..+|..++.. ..+ . .......
T Consensus 119 -~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~-~~~---~-~~~~p~g 192 (305)
T 3dr2_A 119 -HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL-QRM---A-DLDHPNG 192 (305)
T ss_dssp -EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC-EEE---E-EESSEEE
T ss_pred -EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE-EEE---e-cCCCCcc
Confidence 2211111 134667999999998886 331 24677777644322 111 1 2345678
Q ss_pred EEecCCCCcEEEEecCCC-----CCeEEEEECCCCceE--EEee--cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEE
Q 019847 195 LAWSPHQVNVLATGGGRE-----DGCIKIWNVQKGTCI--HGID--AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265 (335)
Q Consensus 195 ~~~~~~~~~~~~~~~g~~-----d~~i~i~d~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 265 (335)
++|+|+++.++++.. . ++.|.+|++..+... ..+. .......++++++|+..++. .+.|.+
T Consensus 193 l~~spdg~~lyv~~~--~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~--------~~gv~~ 262 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQT--PEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS--------GTGVCV 262 (305)
T ss_dssp EEECTTSSEEEEEEC--CC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC--------SSEEEE
T ss_pred eEEcCCCCEEEEEec--CCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec--------CCcEEE
Confidence 999999987777653 2 278999998765411 1111 12345678899999855432 456999
Q ss_pred EECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcE
Q 019847 266 WKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETI 305 (335)
Q Consensus 266 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 305 (335)
|+. .++.+..+..+. .+..++|+++++.|..++.++..
T Consensus 263 ~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 263 FDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLW 300 (305)
T ss_dssp ECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEE
T ss_pred ECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEE
Confidence 997 567776666555 58899999999888888776433
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.8e-12 Score=105.18 Aligned_cols=232 Identities=10% Similarity=0.026 Sum_probs=152.1
Q ss_pred cceeeeecCC-ceEEEe-cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCC--cEEEEeCCCceeE
Q 019847 18 YSKVIDWGRN-NVLAVA-LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDS--KLQLWDAETSKLV 93 (335)
Q Consensus 18 ~~~~~~~~~~-~~~~~~-~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~ 93 (335)
....++|+++ .++++. .++.|++||.++++....... ..... ++|+|+++.|+++..++ .|.+++...+...
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~---~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG---FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET---CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc---CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4567888774 455554 458999999988876554432 22334 99999999999888766 7888887765443
Q ss_pred eee----cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE---eecCCCCE--EEEEeecC-CCEEEEEe
Q 019847 94 RNL----EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC---IKAHSGEV--CGLKWSNE-GNLLASGG 163 (335)
Q Consensus 94 ~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~~~~i--~~~~~~~~-~~~l~~~~ 163 (335)
..+ ......+.+++++| ++..|+.+..++.|+.||..+....... ..++...- ..++|+|+ +.++++-.
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 333 22456788999998 4455555777889999998765432210 11222222 38999995 66666666
Q ss_pred CCCeEEEEEccCCCcccceeeccCC---------------CCCeeEEEecCCCCcEEEEecCC-CCCeEEEEECCCCceE
Q 019847 164 DDNVVRIWERSKMSSSKSLHRFTDH---------------CGGVKALAWSPHQVNVLATGGGR-EDGCIKIWNVQKGTCI 227 (335)
Q Consensus 164 ~dg~i~iwd~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~~~~~g~-~d~~i~i~d~~~~~~~ 227 (335)
.++.|+.|+.... +..+.++ -.....++++|++. ++++. . .++.|+.||+.+++..
T Consensus 287 ~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad--~~~~~~I~~~~~~~G~v~ 358 (409)
T 3hrp_A 287 NLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVD--GFKGYCLRKLDILDGYVS 358 (409)
T ss_dssp TTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEE--TTTTCEEEEEETTTTEEE
T ss_pred CCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEe--CCCCCEEEEEECCCCEEE
Confidence 7789999986532 1122111 13478999999996 55543 2 4789999998877654
Q ss_pred EEeec---------------CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEEC
Q 019847 228 HGIDA---------------KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKY 268 (335)
Q Consensus 228 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 268 (335)
..... -.....+++++++..+++. ..++.|+.+++
T Consensus 359 ~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad------~~n~~Ir~i~~ 408 (409)
T 3hrp_A 359 TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAE------AWGKAIRKYAV 408 (409)
T ss_dssp EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEE------STTCEEEEEEE
T ss_pred EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEE------CCCCeEEEEEe
Confidence 33322 1347788999887665554 45677776654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=6.9e-12 Score=103.42 Aligned_cols=251 Identities=8% Similarity=-0.100 Sum_probs=161.9
Q ss_pred cCCceEEEe-cCC----eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE----------CCCcEEEEeCCC
Q 019847 25 GRNNVLAVA-LGP----VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY----------MDSKLQLWDAET 89 (335)
Q Consensus 25 ~~~~~~~~~-~~~----~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~ 89 (335)
.+.++++.. .++ .|.++|..+++.+..+.... .+ .+.++||+++++++. .++.|.+||+.+
T Consensus 30 ~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~--~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T 105 (368)
T 1mda_H 30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF--LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT 105 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT--TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT
T ss_pred CCCeEEEECCccCCccceEEEEECCCCeEEEEEeCCC--CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 334444444 344 88899999999887766532 33 799999999998886 367899999999
Q ss_pred ceeEeeeccc-------ccceeEeeecCCCCCEEEEeeC--CCcEEE--EecccCCeeeEEeecC---------------
Q 019847 90 SKLVRNLEGH-------HRRVATSSWNHWNGHILTSGSK--DKSIIN--HDVRVSNNVTSCIKAH--------------- 143 (335)
Q Consensus 90 ~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~--dg~i~~--~d~~~~~~~~~~~~~~--------------- 143 (335)
++.+.++... ......+.++| ++++++++.. +..+.+ +|..+ ....-.+.
T Consensus 106 ~~vv~~I~v~~~~~~~~g~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~ 181 (368)
T 1mda_H 106 FLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLG 181 (368)
T ss_dssp CCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECC
T ss_pred CCEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEE
Confidence 9999988643 13467899999 8888888764 457888 88865 11110000
Q ss_pred --CCCEEEEEe--------------------------ecCCCEEEEEeCCCeEEEEEccCCCcccceeeccC--------
Q 019847 144 --SGEVCGLKW--------------------------SNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD-------- 187 (335)
Q Consensus 144 --~~~i~~~~~--------------------------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------- 187 (335)
.+.+..+.. .+++..++..+. +.+.+.|+.... .+.+..+.-
T Consensus 182 ~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~-~~v~~~~~~~~~~~~~~ 259 (368)
T 1mda_H 182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAG-ATMKAAIDGNESGRKAD 259 (368)
T ss_dssp CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSC-CEEECCCCSSCTHHHHT
T ss_pred cCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCc-ceEEEEEEecccccccc
Confidence 000000000 222333333333 556666654211 011111100
Q ss_pred --CCCCeeEEEecCCCCcEEEEecCC-C-----CCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeec-
Q 019847 188 --HCGGVKALAWSPHQVNVLATGGGR-E-----DGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASG- 258 (335)
Q Consensus 188 --~~~~v~~~~~~~~~~~~~~~~~g~-~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 258 (335)
.......+.++|++++++++.... . ++.+.++|+.+.+.+..+..+.....+.++|+++.++... .
T Consensus 260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~-----~~ 334 (368)
T 1mda_H 260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYAN-----SA 334 (368)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEE-----ET
T ss_pred ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEc-----cC
Confidence 011122268999998888764200 0 2356699999999999998888899999999998765442 4
Q ss_pred CCCeEEEEECCCCceeecccCCCCceeEeEEcC
Q 019847 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSP 291 (335)
Q Consensus 259 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 291 (335)
.++.|.++|+.+++.+.++..... ...+++.+
T Consensus 335 ~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 335 GTEVLDIYDAASDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp TTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred CCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence 589999999999999999876554 34565544
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=6.6e-12 Score=112.65 Aligned_cols=283 Identities=11% Similarity=0.075 Sum_probs=182.7
Q ss_pred eeeecCCceEEEecCCeEEEEEecCCceeeEEeec-CCC--CCceE-EEEcCCCCEEEEEEC------CCcEEEEeCCCc
Q 019847 21 VIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVP-GED--DYPTS-VSWSHDAKTLAVGYM------DSKLQLWDAETS 90 (335)
Q Consensus 21 ~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~-~~~--~~v~~-~~~~~~~~~l~~~~~------dg~i~iw~~~~~ 90 (335)
.+...++.+++++.|+.|..+|..+|+..-.+... ... ..+.. ... .+..+++++. +|.|+.+|.++|
T Consensus 123 ~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG 200 (677)
T 1kb0_A 123 GVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETG 200 (677)
T ss_dssp CCEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred CceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCC
Confidence 34556678888889999999999999986655543 110 11111 111 2445666553 689999999999
Q ss_pred eeEeeecccccc--------------------------------eeEeeecCCCCCEEEEeeCCC---------------
Q 019847 91 KLVRNLEGHHRR--------------------------------VATSSWNHWNGHILTSGSKDK--------------- 123 (335)
Q Consensus 91 ~~~~~~~~~~~~--------------------------------v~~~~~~~~~~~~l~~~~~dg--------------- 123 (335)
+.+..+...... ...+++.+ +..+++.+..++
T Consensus 201 ~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~ 279 (677)
T 1kb0_A 201 ERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDN 279 (677)
T ss_dssp CEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCC
T ss_pred cEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCC
Confidence 988776532211 12467777 777888777664
Q ss_pred ----cEEEEecccCCeeeEEeec-CC-------CCEEEEEeecCC---CEEEEEeCCCeEEEEEccCCCcccceeecc--
Q 019847 124 ----SIINHDVRVSNNVTSCIKA-HS-------GEVCGLKWSNEG---NLLASGGDDNVVRIWERSKMSSSKSLHRFT-- 186 (335)
Q Consensus 124 ----~i~~~d~~~~~~~~~~~~~-~~-------~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-- 186 (335)
.|..+|.++++..-..... |. ....-+....+| ..++.++.+|.++++|.++++.......-.
T Consensus 280 ~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~ 359 (677)
T 1kb0_A 280 LYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVN 359 (677)
T ss_dssp TTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred eeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccC
Confidence 4999999988765443222 21 122223333467 688999999999999987754321111000
Q ss_pred ------CCCCCe------------------------eEEEecCCCCcEEEEec--------------C------------
Q 019847 187 ------DHCGGV------------------------KALAWSPHQVNVLATGG--------------G------------ 210 (335)
Q Consensus 187 ------~~~~~v------------------------~~~~~~~~~~~~~~~~~--------------g------------ 210 (335)
....++ ..++++|+...+++... |
T Consensus 360 ~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 439 (677)
T 1kb0_A 360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG 439 (677)
T ss_dssp SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred cccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccc
Confidence 000000 25678888765555321 0
Q ss_pred --------------CCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeec
Q 019847 211 --------------REDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE 276 (335)
Q Consensus 211 --------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 276 (335)
...+.|..||+.+++.+..++...+.....+...+..++.+ +.++.+++||..+++.+.+
T Consensus 440 ~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g------~~dg~l~a~D~~tG~~lw~ 513 (677)
T 1kb0_A 440 WNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQG------TADGRLVAYHAATGEKLWE 513 (677)
T ss_dssp CCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE------CTTSEEEEEETTTCCEEEE
T ss_pred cccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEE------CCCCcEEEEECCCCceeee
Confidence 01278999999999999888877666666666677766665 6799999999999999988
Q ss_pred ccCCCC-ceeEeEEcCCCCEEEEE-eC----------------CCcEEEEecCC
Q 019847 277 LQSSNS-RILDLSQSPDGLTVATA-GA----------------DETIRFWEAFG 312 (335)
Q Consensus 277 ~~~~~~-~i~~~~~~~~~~~l~~~-~~----------------dg~v~iw~~~~ 312 (335)
+....+ .-.-+.+..+|+.+++. +. .+.+..|.+..
T Consensus 514 ~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 514 APTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp EECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred eeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 874432 23445667888644432 22 36788888874
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-11 Score=100.24 Aligned_cols=254 Identities=16% Similarity=0.161 Sum_probs=166.1
Q ss_pred eEEEEEecC-----CceeeEEeecCCCCCceEEEE-----------c--CCCCEEEEEE-CCCcEEEEeCCCc----eeE
Q 019847 37 VLFLWKWEN-----GKVKKLLQVPGEDDYPTSVSW-----------S--HDAKTLAVGY-MDSKLQLWDAETS----KLV 93 (335)
Q Consensus 37 ~i~vw~~~~-----~~~~~~~~~~~~~~~v~~~~~-----------~--~~~~~l~~~~-~dg~i~iw~~~~~----~~~ 93 (335)
.+.+.|++. ++.+....++.-.+....+.| + +++++|++.+ .++.|.++|+.+. +..
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~ 123 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII 123 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence 688888876 777777777654445555556 6 7888887655 6789999999755 666
Q ss_pred eeec-------ccccceeEeeecCCCCCEEEEeeCC------CcEEEEecccCCeeeEEeec-CC-CCEEEEEeecCCCE
Q 019847 94 RNLE-------GHHRRVATSSWNHWNGHILTSGSKD------KSIINHDVRVSNNVTSCIKA-HS-GEVCGLKWSNEGNL 158 (335)
Q Consensus 94 ~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~-~~-~~i~~~~~~~~~~~ 158 (335)
+.++ ........+...| ++ +++++..+ |.+.++|.++.+.+.....+ .. .--..+.|+|+++.
T Consensus 124 k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~ 201 (462)
T 2ece_A 124 KVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEV 201 (462)
T ss_dssp EEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTE
T ss_pred eeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCE
Confidence 6663 1112455677788 77 77776655 78999999876654333212 11 22346888999998
Q ss_pred EEEEe-------------------CCCeEEEEEccCCCcccceeeccCC-C-CCeeEEEe--cCCCCcEEEEec---CCC
Q 019847 159 LASGG-------------------DDNVVRIWERSKMSSSKSLHRFTDH-C-GGVKALAW--SPHQVNVLATGG---GRE 212 (335)
Q Consensus 159 l~~~~-------------------~dg~i~iwd~~~~~~~~~~~~~~~~-~-~~v~~~~~--~~~~~~~~~~~~---g~~ 212 (335)
+++.. .+.+|.+||+.+. +.+.++... . .....+.| +|++++.++++. ...
T Consensus 202 mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~---k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~L 278 (462)
T 2ece_A 202 LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR---KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDL 278 (462)
T ss_dssp EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT---EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTC
T ss_pred EEEccCcCccccccccchhhhhhccCCEEEEEECCCC---cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCC
Confidence 88874 3689999998864 334444322 1 22344545 999987776641 003
Q ss_pred CCeEEEEECCCCce--EEEe--ec-----------------CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC-
Q 019847 213 DGCIKIWNVQKGTC--IHGI--DA-----------------KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN- 270 (335)
Q Consensus 213 d~~i~i~d~~~~~~--~~~~--~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~- 270 (335)
+++|.+|....++. .+.+ .. ......+.++++|++|.++. ...+.|.+||+..
T Consensus 279 ss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSn-----rg~d~VavfdV~d~ 353 (462)
T 2ece_A 279 SSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSL-----WGIGEVRQYDISNP 353 (462)
T ss_dssp CEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEE-----TTTTEEEEEECSST
T ss_pred CceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEe-----CCCCEEEEEEecCC
Confidence 56787766554422 1111 11 23467899999999998764 5578999999853
Q ss_pred --CceeecccCCC--------------CceeEeEEcCCCCEEEEEe
Q 019847 271 --MTKVGELQSSN--------------SRILDLSQSPDGLTVATAG 300 (335)
Q Consensus 271 --~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~~~~ 300 (335)
.+.+..+.... +.-..++++|||++|+++.
T Consensus 354 ~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 354 FKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 34444443220 1357899999999999988
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=9.4e-11 Score=93.17 Aligned_cols=250 Identities=8% Similarity=0.008 Sum_probs=160.4
Q ss_pred EEEecCCeEEEEEecCCcee-----eEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCceeEeeecccccce
Q 019847 30 LAVALGPVLFLWKWENGKVK-----KLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETSKLVRNLEGHHRRV 103 (335)
Q Consensus 30 ~~~~~~~~i~vw~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v 103 (335)
+..+..+.|+.++++..... .....+ ...+..++|+++++.|..+. .++.|..+++........+.......
T Consensus 4 l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~--~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIP--AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEEEEEEEEESSSCBCGGGCEEEEEEE--EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEcCCeEEEEEecCcccccccceeeecCC--CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 33334568999998765432 122211 23468999999776666554 57899999987655433333233567
Q ss_pred eEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC---CCeEEEEEccCCCccc
Q 019847 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD---DNVVRIWERSKMSSSK 180 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~ 180 (335)
..+++.+..+.++++-...+.|.++++..... .............++++|++..|..+.. .+.|..+++... ..+
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~ 159 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRR 159 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCE
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcE
Confidence 89999983455666666678999999874332 2222222256789999997666655554 368888887632 212
Q ss_pred ceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCC
Q 019847 181 SLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDG 260 (335)
Q Consensus 181 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (335)
.+. .........++++|++..++++.. ..+.|..+|+........+........++.. +..++.. ....
T Consensus 160 ~~~--~~~~~~P~gia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva-----~~~~ 228 (267)
T 1npe_A 160 ILA--QDNLGLPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYT-----DWKT 228 (267)
T ss_dssp EEE--CTTCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEE-----ETTT
T ss_pred EEE--ECCCCCCcEEEEcCCCCEEEEEEC--CCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEE-----ECCC
Confidence 221 122345789999998888888876 6789999999765444344433344566654 3444333 2457
Q ss_pred CeEEEEECCCCceeecccCCC-CceeEeEEcCCCC
Q 019847 261 NKLCLWKYPNMTKVGELQSSN-SRILDLSQSPDGL 294 (335)
Q Consensus 261 ~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~ 294 (335)
+.|..+|..+++.+..+.... .....+++.|++.
T Consensus 229 ~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 229 NSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 899999999999888876543 2467888888764
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.53 E-value=4.7e-11 Score=99.89 Aligned_cols=263 Identities=7% Similarity=0.018 Sum_probs=164.4
Q ss_pred eeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccc
Q 019847 21 VIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH 100 (335)
Q Consensus 21 ~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 100 (335)
.....++.+++++.++.|..+|.++++..-........ ...... .+..+++++.++.|..+|..+++.+.......
T Consensus 98 ~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~--~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~ 173 (376)
T 3q7m_A 98 GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEA--LSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDM 173 (376)
T ss_dssp EEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCC--CSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCce--EcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCC
Confidence 34456678888889999999999999976655543321 111122 24578888899999999999999887765432
Q ss_pred cce-----eEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCC------EEEEEeec--CCCEEEEEeCCCe
Q 019847 101 RRV-----ATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGE------VCGLKWSN--EGNLLASGGDDNV 167 (335)
Q Consensus 101 ~~v-----~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~------i~~~~~~~--~~~~l~~~~~dg~ 167 (335)
... ..... .+..++.+..++.+..+|..+++............ +..+.-.| .+..++.++.++.
T Consensus 174 ~~~~~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~ 250 (376)
T 3q7m_A 174 PSLSLRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN 250 (376)
T ss_dssp -----CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC
T ss_pred CceeecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE
Confidence 211 22222 24567888889999999998777644432211100 00011112 3467778888999
Q ss_pred EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CC-cEeEEEeCCCC
Q 019847 168 VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KA-QICGLEWNRHH 245 (335)
Q Consensus 168 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~-~~~~~~~~~~~ 245 (335)
+..+|.++++. +.... ......+... +..+++.. .++.+..+|..+++.+...+. .. ....... .+
T Consensus 251 l~~~d~~tG~~---~w~~~--~~~~~~~~~~--~~~l~~~~---~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~ 318 (376)
T 3q7m_A 251 LTALDLRSGQI---MWKRE--LGSVNDFIVD--GNRIYLVD---QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YN 318 (376)
T ss_dssp EEEEETTTCCE---EEEEC--CCCEEEEEEE--TTEEEEEE---TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ET
T ss_pred EEEEECCCCcE---Eeecc--CCCCCCceEE--CCEEEEEc---CCCeEEEEECCCCcEEEeecccCCCcccCCEE--EC
Confidence 99999876532 32222 2234444443 33555554 689999999999998776652 11 2222222 12
Q ss_pred ceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 246 KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
..++.+ +.+|.+..+|..+++.+.........+....... +..|+.++.+|.|..|+
T Consensus 319 ~~l~v~------~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~-~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 319 GNLVVG------DSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA-DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TEEEEE------CTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEE-TTEEEEEBTTSCEEEEE
T ss_pred CEEEEE------eCCCeEEEEECCCCcEEEEEecCCCcceeCCEEE-CCEEEEEeCCCEEEEEe
Confidence 334433 6689999999999998877665333333222222 34678889999999986
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=6.5e-12 Score=112.67 Aligned_cols=286 Identities=12% Similarity=0.018 Sum_probs=183.6
Q ss_pred CCceEEEecCCeEEEEEecCCceeeEEeecCCCC---------CceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 26 RNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDD---------YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 26 ~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
++.+++++.++.|+-+|..+|+.+-.+....... ....+++ ++..+++++.|+.|..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 4567777788999999999998766555432110 0112333 4668888999999999999999998887
Q ss_pred ccc-c----cceeEeeecCCCCCEEEEeeC------CCcEEEEecccCCeeeEEeecCCC--------------------
Q 019847 97 EGH-H----RRVATSSWNHWNGHILTSGSK------DKSIINHDVRVSNNVTSCIKAHSG-------------------- 145 (335)
Q Consensus 97 ~~~-~----~~v~~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~-------------------- 145 (335)
... . ..+..--.. .+..++.++. ++.|+.+|.++++.+-+.......
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 654 1 112211111 2345555543 689999999988765443221111
Q ss_pred -----------CEEEEEeecCCCEEEEEeCCC-------------------eEEEEEccCCCcccceeeccCCC------
Q 019847 146 -----------EVCGLKWSNEGNLLASGGDDN-------------------VVRIWERSKMSSSKSLHRFTDHC------ 189 (335)
Q Consensus 146 -----------~i~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~------ 189 (335)
....++++|++..++.++.++ .|..+|.++++..-..+. ..|.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~-~~~d~wd~~~ 311 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE-TPGDNWDYTS 311 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES-STTCCSCCCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec-CCCccccccc
Confidence 113577889888888887664 488899877543222221 1121
Q ss_pred -CCeeEEEecCCCC--cEEEEecCCCCCeEEEEECCCCceEEEeecCC------------cE------------------
Q 019847 190 -GGVKALAWSPHQV--NVLATGGGREDGCIKIWNVQKGTCIHGIDAKA------------QI------------------ 236 (335)
Q Consensus 190 -~~v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~------------~~------------------ 236 (335)
.....+....+|+ .+++.++ .+|.++++|.++|+.+..++... ++
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~ 389 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAP--KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGP 389 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCT
T ss_pred CCCcEEEecccCCcEeeEEEEEC--CCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCc
Confidence 1122233333553 4555554 89999999999999987765321 11
Q ss_pred ------eEEEeCCCCceeeeeeeee-----------ee--------------------------cCCCeEEEEECCCCce
Q 019847 237 ------CGLEWNRHHKEILSGHGFS-----------AS--------------------------GDGNKLCLWKYPNMTK 273 (335)
Q Consensus 237 ------~~~~~~~~~~~~~~~~~~~-----------~~--------------------------~~~~~i~i~d~~~~~~ 273 (335)
..++++|+...+++...-. .+ ...+.|..||+.+++.
T Consensus 390 ~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~ 469 (677)
T 1kb0_A 390 YGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA 469 (677)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE
T ss_pred ccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE
Confidence 1467888887776642100 00 0137899999999998
Q ss_pred eecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc
Q 019847 274 VGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 319 (335)
+.++.. ..++....+..++.+++.++.||.+++||..+++.....
T Consensus 470 ~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~ 514 (677)
T 1kb0_A 470 AWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA 514 (677)
T ss_dssp EEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeee
Confidence 877653 334555567777888999999999999999988765443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-11 Score=111.33 Aligned_cols=268 Identities=12% Similarity=0.122 Sum_probs=170.4
Q ss_pred eeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC---CCCEEEEEE------CCCcEEEEeCCCcee
Q 019847 22 IDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH---DAKTLAVGY------MDSKLQLWDAETSKL 92 (335)
Q Consensus 22 ~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~------~dg~i~iw~~~~~~~ 92 (335)
+...++.+++++.|+.|..+|.++|+..-......+......+..+| ++ .+++++ .+|.|+.||.++|+.
T Consensus 117 ~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~ 195 (689)
T 1yiq_A 117 VAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKE 195 (689)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred cEEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcE
Confidence 34456788888889999999999999866555431111111111222 44 455553 368999999999998
Q ss_pred Eeeecccc-------------------------------cceeEeeecCCCCCEEEEeeCCCc-----------------
Q 019847 93 VRNLEGHH-------------------------------RRVATSSWNHWNGHILTSGSKDKS----------------- 124 (335)
Q Consensus 93 ~~~~~~~~-------------------------------~~v~~~~~~~~~~~~l~~~~~dg~----------------- 124 (335)
+..+.... ..-..+++.| +..+++.+..++.
T Consensus 196 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~ 274 (689)
T 1yiq_A 196 AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFL 274 (689)
T ss_dssp EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTT
T ss_pred EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceee
Confidence 87764210 0112567777 7788888887764
Q ss_pred --EEEEecccCCeeeEEeec-CC-------CCEEEEEeecCCC---EEEEEeCCCeEEEEEccCCCcccceee-------
Q 019847 125 --IINHDVRVSNNVTSCIKA-HS-------GEVCGLKWSNEGN---LLASGGDDNVVRIWERSKMSSSKSLHR------- 184 (335)
Q Consensus 125 --i~~~d~~~~~~~~~~~~~-~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~------- 184 (335)
|..+|.++++..-..... |. .+........+|+ .++.++.+|.++++|.++++.......
T Consensus 275 ~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~ 354 (689)
T 1yiq_A 275 SSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTK 354 (689)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred eeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccc
Confidence 999999988765443222 21 2222223333554 788999999999999877643211000
Q ss_pred ------------------ccCCCC-----------CeeEEEecCCCCcEEEEec------------------------C-
Q 019847 185 ------------------FTDHCG-----------GVKALAWSPHQVNVLATGG------------------------G- 210 (335)
Q Consensus 185 ------------------~~~~~~-----------~v~~~~~~~~~~~~~~~~~------------------------g- 210 (335)
+..... .-..++++|+...+++... |
T Consensus 355 ~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (689)
T 1yiq_A 355 GMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGL 434 (689)
T ss_dssp EEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSS
T ss_pred ccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCc
Confidence 000000 0123678887765554311 0
Q ss_pred -----------------CCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 211 -----------------REDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 211 -----------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
..+|.|+.||+.+++.+..++.+.+...-.+...+..++.+ +.|+.++.||.++++.
T Consensus 435 ~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g------t~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 435 RTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEG------SADGRVIAYAADTGEK 508 (689)
T ss_dssp EECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE------CTTSEEEEEETTTCCE
T ss_pred cccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEE------CCCCcEEEEECCCCcc
Confidence 01478999999999999888877665544555666666655 7799999999999999
Q ss_pred eecccCCCCc-eeEeEEcCCCCEEE
Q 019847 274 VGELQSSNSR-ILDLSQSPDGLTVA 297 (335)
Q Consensus 274 ~~~~~~~~~~-i~~~~~~~~~~~l~ 297 (335)
+.+++...+. ..-+.|..+|+..+
T Consensus 509 lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 509 LWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ceeeeCCCCcccCceEEEECCEEEE
Confidence 9888754332 24467778886443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-12 Score=106.33 Aligned_cols=266 Identities=10% Similarity=0.031 Sum_probs=166.5
Q ss_pred cceeeeecC-CceEEEe---cCCeEEEEEecCCceeeEE----eecCCCCCceEEEEcCCCCEEEEEEC-----CCcEEE
Q 019847 18 YSKVIDWGR-NNVLAVA---LGPVLFLWKWENGKVKKLL----QVPGEDDYPTSVSWSHDAKTLAVGYM-----DSKLQL 84 (335)
Q Consensus 18 ~~~~~~~~~-~~~~~~~---~~~~i~vw~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i 84 (335)
....+++++ ++++++. .++.++||.+++++..+.- ...+|-..+..++++++++++++-.. ++.|.+
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~ 97 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVA 97 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEE
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEE
Confidence 456678875 4566553 2343667776655432110 11234567899999999876665543 578999
Q ss_pred EeCCCceeEeeeccc------ccceeEeeecCCCCCEEEEee---CCCcEEEEecccCCeeeEEeecCCCCEE-EEEeec
Q 019847 85 WDAETSKLVRNLEGH------HRRVATSSWNHWNGHILTSGS---KDKSIINHDVRVSNNVTSCIKAHSGEVC-GLKWSN 154 (335)
Q Consensus 85 w~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~i~-~~~~~~ 154 (335)
||+.+++.+..+... ...+..+++.+.++..+++.. .++.|.+||+.++. ..+.+..|..... ...+.+
T Consensus 98 ~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~-~~r~~~~~~~~~~~~~~~~~ 176 (343)
T 2qe8_A 98 WDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL-AARVLQGYPGIAPEDIDLVI 176 (343)
T ss_dssp EETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC-EEEECTTCTTTSCCSCCCEE
T ss_pred EECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC-EEEEecCCCcccccccceeE
Confidence 999999877665422 235688999873455556655 67899999998554 3444443322110 134455
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC---CCc-----e
Q 019847 155 EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ---KGT-----C 226 (335)
Q Consensus 155 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~---~~~-----~ 226 (335)
++..+.+.+.++.++.|. ..+..++|+|+++.++++.. ..+.+..++.. .+. .
T Consensus 177 ~g~~~~~~~~~g~~~~~~-----------------~~~~gia~s~dg~~ly~~~~--~~~~l~~~~~~~~~~~~~~~~~~ 237 (343)
T 2qe8_A 177 DGVPVQIGQPDGTVIRPH-----------------LGVNGIVLDAENEWLYLSPM--HSTSMYRIKSADLSNLQLTDAEL 237 (343)
T ss_dssp TTEECBEECTTSCEECCC-----------------CCEEEEEECTTSCEEEEEES--SCSEEEEEEHHHHTCTTCCHHHH
T ss_pred CCEEEEeccCCCceecee-----------------cccceeEeccCCCEEEEEeC--CCCeEEEEEHHHhcCCCCChhhh
Confidence 676677677777665443 23578999999987777654 44466666532 111 0
Q ss_pred ---EEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccC-CCCceeEeEEcCCCCEEEEEeCC
Q 019847 227 ---IHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS-SNSRILDLSQSPDGLTVATAGAD 302 (335)
Q Consensus 227 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d 302 (335)
+...........++++++|...++. ..++.|.+||..+++....... +...+.+++|.++++++++.+..
T Consensus 238 ~~~~~~~g~~g~pdgia~d~~G~l~va~------~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 238 GSKIERYSEKPICDGISIDKDHNIYVGD------LAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp HTTCEEEEECCSCSCEEECTTCCEEEEE------GGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred hcceEecccCCCCceEEECCCCCEEEEc------cCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 1111122345679999998776665 5688999999855654322222 23458899999999888888766
Q ss_pred CcEEEEe
Q 019847 303 ETIRFWE 309 (335)
Q Consensus 303 g~v~iw~ 309 (335)
+.+.+|.
T Consensus 312 ~~~~~f~ 318 (343)
T 2qe8_A 312 HHSAPLN 318 (343)
T ss_dssp GGSGGGB
T ss_pred ccccccc
Confidence 5554443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-10 Score=95.69 Aligned_cols=218 Identities=15% Similarity=0.073 Sum_probs=143.3
Q ss_pred ceeeeecC--CceEEEe-cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee
Q 019847 19 SKVIDWGR--NNVLAVA-LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN 95 (335)
Q Consensus 19 ~~~~~~~~--~~~~~~~-~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 95 (335)
.....|++ +.++.+. .++.|..||.++++... +.. ...+.+++++|+|+++++. .+ .|.+||..+++....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~---~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL---PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC---SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEC---CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence 34577887 3455544 57899999998876532 332 3578999999999877654 44 499999988775432
Q ss_pred ecc----cccceeEeeecCCCCCEEEEeeC------CCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEE-eC
Q 019847 96 LEG----HHRRVATSSWNHWNGHILTSGSK------DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASG-GD 164 (335)
Q Consensus 96 ~~~----~~~~v~~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~ 164 (335)
... ....+..+.++| +++++++... .+.|..++ ...... +.........++|+|+++.++.+ +.
T Consensus 125 ~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~---~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA---KGKVTK-LFADISIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp ECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE---TTEEEE-EEEEESSEEEEEECTTSCEEEEEETT
T ss_pred eeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe---CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECC
Confidence 221 124688999999 8887665542 24455555 333222 22233457889999999877555 45
Q ss_pred CCeEEEEEcc--CC-Cc--ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC-cEeE
Q 019847 165 DNVVRIWERS--KM-SS--SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA-QICG 238 (335)
Q Consensus 165 dg~i~iwd~~--~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-~~~~ 238 (335)
++.|.+||+. ++ .. ...+..+......+..++++++|..+++.. .++.|..||. +++.+..+..+. .+.+
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~---~~~~v~~~d~-~g~~~~~i~~~~~~~~~ 275 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW---GEGAVDRYDT-DGNHIARYEVPGKQTTC 275 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE---TTTEEEEECT-TCCEEEEEECSCSBEEE
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe---CCCEEEEECC-CCCEEEEEECCCCCcEE
Confidence 6899999985 32 21 112223333345577899999996444433 4688999998 577777776544 6889
Q ss_pred EEeC-CCCceeeee
Q 019847 239 LEWN-RHHKEILSG 251 (335)
Q Consensus 239 ~~~~-~~~~~~~~~ 251 (335)
++|+ +++..++++
T Consensus 276 ~af~g~d~~~L~vt 289 (326)
T 2ghs_A 276 PAFIGPDASRLLVT 289 (326)
T ss_dssp EEEESTTSCEEEEE
T ss_pred EEEecCCCCEEEEE
Confidence 9998 887776554
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-15 Score=125.91 Aligned_cols=262 Identities=11% Similarity=0.049 Sum_probs=141.4
Q ss_pred cCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccc-e
Q 019847 25 GRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRR-V 103 (335)
Q Consensus 25 ~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-v 103 (335)
.++.+++++.|+.|+.||..+|+..-.+.. ..+.+..+..++..+++++.||.|+.||.++++.+..+..+... +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC----CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC----CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 567788888999999999999998665543 34555556667878888889999999999999887666543221 1
Q ss_pred eE-eeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccce
Q 019847 104 AT-SSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL 182 (335)
Q Consensus 104 ~~-~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 182 (335)
.+ .... .+..+++++.++.++.||.++++.... +..+. ...++|++..+++++.|+.|+.||.++++..-..
T Consensus 84 ~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~-~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 84 QASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQT-LSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp TTCSCC-------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred ccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEE-ecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence 11 1111 345778888999999999998775433 22222 2345678888999999999999998876432222
Q ss_pred eeccCCCCCeeEEEecCCC---CcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeE-EEeCCCCceeeeeeeeeeec
Q 019847 183 HRFTDHCGGVKALAWSPHQ---VNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICG-LEWNRHHKEILSGHGFSASG 258 (335)
Q Consensus 183 ~~~~~~~~~v~~~~~~~~~---~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 258 (335)
.. .. .....+.++. ..+++.+ .||.++.||.++|+.+...+...++.. ..+++++...+.. . ..
T Consensus 157 ~~-~~----~~~~~~~~~~~~~~~v~~~~---~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~~v~~-~-~~-- 224 (369)
T 2hz6_A 157 TY-FD----YAASLPEDDVDYKMSHFVSN---GDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVMH-I-NV-- 224 (369)
T ss_dssp EE-EE----ECCBCCCCCTTCCCCEEEEE---TSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCEEECC-E-EE--
T ss_pred ec-cc----ccCccccCCccccceEEEEC---CCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceEeccc-e-ee--
Confidence 11 11 1222333321 3455543 699999999999999888877666543 3445555322110 0 00
Q ss_pred CCCeEEEEECCCCc----eeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 259 DGNKLCLWKYPNMT----KVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 259 ~~~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
.++.++.+|..+++ .+..+... +.+.+... .+..|+.++.||.++.++...
T Consensus 225 ~~~~l~~ld~~tG~~~~~~~W~~~~~-~~~~sp~~--~~g~lyv~~~~G~l~al~~~~ 279 (369)
T 2hz6_A 225 AVETLRYLTFMSGEVGRITKWKYPFP-KETEAKSK--LTPTLYVGKYSTSLYASPSMV 279 (369)
T ss_dssp EHHHHHHHHHHHHHHHHHHTSCCCCC-CHHHHHHH--SEEEECBEECSSCEECCEEEE
T ss_pred cccceeeeehhcCCcccceeeeeccC-cccccccc--ccceEEEecccCCEEecCccc
Confidence 03344555555554 33332211 11111111 234677888899998888763
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.51 E-value=9.1e-11 Score=98.17 Aligned_cols=265 Identities=6% Similarity=-0.014 Sum_probs=166.2
Q ss_pred cCCceEEEecCCeEEEEEecCCceeeEEeecCC-------CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec
Q 019847 25 GRNNVLAVALGPVLFLWKWENGKVKKLLQVPGE-------DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97 (335)
Q Consensus 25 ~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 97 (335)
.++.+++++.++.|..+|.++++..-...+... ...+.+ ....++..+++++.++.|..+|.++++.+....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 456788888889999999999987665554321 122222 222356678888899999999999999887765
Q ss_pred ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCE------EEEEeecCCCEEEEEeCCCeEEEE
Q 019847 98 GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEV------CGLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 98 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
........... .+..++.++.++.+..+|..+++....... . ..+ ..... .+..++.+..++.+..+
T Consensus 131 ~~~~~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~-~-~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 131 VAGEALSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNL-D-MPSLSLRGESAPTT--AFGAAVVGGDNGRVSAV 203 (376)
T ss_dssp CSSCCCSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEEC-C-C-----CCCCCCEE--ETTEEEECCTTTEEEEE
T ss_pred CCCceEcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeC-C-CCceeecCCCCcEE--ECCEEEEEcCCCEEEEE
Confidence 44332222233 345788888999999999987776443322 1 111 11111 24567788889999999
Q ss_pred EccCCCcccceeeccCCC--CC--------e-eEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEE
Q 019847 172 ERSKMSSSKSLHRFTDHC--GG--------V-KALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLE 240 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~--~~--------v-~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 240 (335)
|.++++. +....... .. + ..... .+..+++.+ .++.+..+|.++++.+....... ...+.
T Consensus 204 d~~tG~~---~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~---~~g~l~~~d~~tG~~~w~~~~~~-~~~~~ 274 (376)
T 3q7m_A 204 LMEQGQM---IWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALA---YNGNLTALDLRSGQIMWKRELGS-VNDFI 274 (376)
T ss_dssp ETTTCCE---EEEEECCC-----------CCCCCCEE--ETTEEEEEC---TTSCEEEEETTTCCEEEEECCCC-EEEEE
T ss_pred ECCCCcE---EEEEecccCCCCcccccccccCCCcEE--ECCEEEEEe---cCcEEEEEECCCCcEEeeccCCC-CCCce
Confidence 9876533 22221110 00 0 01111 123455433 68999999999999887765433 23333
Q ss_pred eCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC-CCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 019847 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS-NSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
. ++..++.+ +.++.+..+|..+++.+...... ...+...... +..|+.++.+|.+.++|..+++..
T Consensus 275 ~--~~~~l~~~------~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 275 V--DGNRIYLV------DQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp E--ETTEEEEE------ETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEE
T ss_pred E--ECCEEEEE------cCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEECCCCcEE
Confidence 2 23344433 56889999999999987666522 2223333332 457888999999999998887644
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-11 Score=96.25 Aligned_cols=217 Identities=10% Similarity=0.113 Sum_probs=143.1
Q ss_pred ceeeeecCC-c-eEEEe-cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee
Q 019847 19 SKVIDWGRN-N-VLAVA-LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN 95 (335)
Q Consensus 19 ~~~~~~~~~-~-~~~~~-~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 95 (335)
.....|+++ + ++.+. .++.|..|+. +++.. .+. .+...+..++++++|+++++...++.|.+|+.+ ++....
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~-~~~--~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~ 121 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD-VLL--DATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLL 121 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-EEE--ESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-EEe--CCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEE
Confidence 345778763 3 44444 6789999987 45532 222 245668999999999976665566789999986 553322
Q ss_pred eccc----ccceeEeeecCCCCCEEEE----eeC-------------CCcEEEEecccCCeeeEEeecCCCCEEEEEeec
Q 019847 96 LEGH----HRRVATSSWNHWNGHILTS----GSK-------------DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN 154 (335)
Q Consensus 96 ~~~~----~~~v~~~~~~~~~~~~l~~----~~~-------------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~ 154 (335)
.... ...+..+++.+ +++++++ |.. .+.|..+|..++.. ... . .......++|+|
T Consensus 122 ~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~-~~~-~-~~~~p~gl~~sp 197 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL-QRM-A-DLDHPNGLAFSP 197 (305)
T ss_dssp ECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC-EEE-E-EESSEEEEEECT
T ss_pred EeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE-EEE-e-cCCCCcceEEcC
Confidence 2111 13467899999 8888886 432 24577777654432 222 2 334578899999
Q ss_pred CCCEEEEEeCC------CeEEEEEccCCCcccceeec-cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceE
Q 019847 155 EGNLLASGGDD------NVVRIWERSKMSSSKSLHRF-TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI 227 (335)
Q Consensus 155 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~ 227 (335)
+++.|+.+... +.|++|++.... ......+ .........++++++|. +.++. .+.|.+||. +++.+
T Consensus 198 dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~----~~gv~~~~~-~g~~~ 270 (305)
T 3dr2_A 198 DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSS----GTGVCVFDS-DGQLL 270 (305)
T ss_dssp TSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECC----SSEEEEECT-TSCEE
T ss_pred CCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEec----CCcEEEECC-CCCEE
Confidence 99988877665 689999987532 1111111 11234456789999996 55533 345999997 57777
Q ss_pred EEeecCCcEeEEEeCCCCceeeee
Q 019847 228 HGIDAKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~ 251 (335)
..+..+..+.+++|.++++.+..+
T Consensus 271 ~~~~~~~~~~~~~f~~d~~~L~it 294 (305)
T 3dr2_A 271 GHIPTPGTASNCTFDQAQQRLFIT 294 (305)
T ss_dssp EEEECSSCCCEEEECTTSCEEEEE
T ss_pred EEEECCCceeEEEEeCCCCEEEEE
Confidence 788776678899999998877665
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-11 Score=110.05 Aligned_cols=243 Identities=12% Similarity=0.115 Sum_probs=158.9
Q ss_pred ccceeeeecCC-ceEEEec--C----CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCC---------
Q 019847 17 YYSKVIDWGRN-NVLAVAL--G----PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDS--------- 80 (335)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~--~----~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------- 80 (335)
..+..++|+++ +.++.+. . ..|++||+++++.... .+.+ .....++|+ |++.|+.++.+.
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEE--EESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCC--ceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 35667789985 4455321 2 4799999999986543 2221 113567899 999999988774
Q ss_pred ----cEEEEeCCCce----eEeeecc-cccceeEeeecCCCCCEEEEeeC----CCcEEEEecccCCeeeEEeecCCCCE
Q 019847 81 ----KLQLWDAETSK----LVRNLEG-HHRRVATSSWNHWNGHILTSGSK----DKSIINHDVRVSNNVTSCIKAHSGEV 147 (335)
Q Consensus 81 ----~i~iw~~~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~i 147 (335)
.|++|++.++. ++..... +......+.|+| +++.|+.... ++.|+++|+.++......+..+....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 39999998754 3333333 445578899999 7877654332 35899999976643344455566555
Q ss_pred EEEEeecCCCEEEEEe-CC---CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC--eEEEEEC
Q 019847 148 CGLKWSNEGNLLASGG-DD---NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG--CIKIWNV 221 (335)
Q Consensus 148 ~~~~~~~~~~~l~~~~-~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~ 221 (335)
... +++++..|+..+ .+ +.|..+|+..+.. .....+..+...+. .|+++++.+++... .++ .|++||+
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~--~~s~~g~~lv~~~~--~~g~~~l~~~d~ 357 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-AHWRDLIPERQQVL--TVHSGSGYLFAEYM--VDATARVEQFDY 357 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCE--EEEEETTEEEEEEE--ETTEEEEEEECT
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc-cccEEEecCCCCEE--EEEEECCEEEEEEE--ECCeeEEEEEEC
Confidence 554 666666555444 33 6799999876532 12334455655555 88999988887765 554 6899998
Q ss_pred CCCceEEEeec--CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 222 QKGTCIHGIDA--KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 222 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
..+ ....+.. ...+..+.+++++..++... .....-+.+..||+.+++.
T Consensus 358 ~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~--ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 358 EGK-RVREVALPGLGSVSGFNGKHDDPALYFGF--ENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp TSC-EEEEECCSSSSEEEECCCCTTCSCEEEEE--ECSSSCCEEEEECTTTCCE
T ss_pred CCC-eeEEeecCCCceEEeeecCCCCCEEEEEe--cCCCCCCEEEEEECCCCeE
Confidence 744 4445443 34577788888988877552 1113348899999887654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-11 Score=107.41 Aligned_cols=288 Identities=13% Similarity=0.059 Sum_probs=179.1
Q ss_pred CCceEEEecCCeEEEEEecCCceeeEEeecCCCC--------Cc-eEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 26 RNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDD--------YP-TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 26 ~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~--------~v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
++.+++++.++.|+.+|..+|+.+-.+....... .+ ..++. .+..+++++.|+.|..+|.++|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 4667788888999999999999765554321100 00 11222 4568888999999999999999998776
Q ss_pred ccc--ccceeEeeecCC-CCCEEEEee------CCCcEEEEecccCCeeeEEeecC------------------------
Q 019847 97 EGH--HRRVATSSWNHW-NGHILTSGS------KDKSIINHDVRVSNNVTSCIKAH------------------------ 143 (335)
Q Consensus 97 ~~~--~~~v~~~~~~~~-~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~------------------------ 143 (335)
... ......+..+|. .+..++.+. .+|.|+.||.++++.+-+.....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence 642 111111111110 123444443 36899999999888654432110
Q ss_pred ------CCCEEEEEeecCCCEEEEEeCCCe-------------------EEEEEccCCCcccceeeccCCC-------CC
Q 019847 144 ------SGEVCGLKWSNEGNLLASGGDDNV-------------------VRIWERSKMSSSKSLHRFTDHC-------GG 191 (335)
Q Consensus 144 ------~~~i~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~-------~~ 191 (335)
......++++|+...++.++.++. |..+|.++++..-..+. ..|. .+
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~-~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQT-TPGDAWDYTATQH 306 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEES-STTCCSCCCCCSC
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeec-CCcccccccCCCC
Confidence 001125778898889999887764 99999887543222221 1121 12
Q ss_pred eeEEEecCCCC--cEEEEecCCCCCeEEEEECCCCceEEEeecCC-----------------------------------
Q 019847 192 VKALAWSPHQV--NVLATGGGREDGCIKIWNVQKGTCIHGIDAKA----------------------------------- 234 (335)
Q Consensus 192 v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~----------------------------------- 234 (335)
........++. .+++.++ .+|.++++|.++|+.+...+...
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~ 384 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAP--KNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPA 384 (689)
T ss_dssp EEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSC
T ss_pred cEEEeeccCCcEEEEEEEEC--CCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCC
Confidence 22222222442 2455554 89999999999999875433211
Q ss_pred -----cEeEEEeCCCCceeeeeeee---------------------eee------------------cCCCeEEEEECCC
Q 019847 235 -----QICGLEWNRHHKEILSGHGF---------------------SAS------------------GDGNKLCLWKYPN 270 (335)
Q Consensus 235 -----~~~~~~~~~~~~~~~~~~~~---------------------~~~------------------~~~~~i~i~d~~~ 270 (335)
.-..++++|+...+++...- ..+ ..+|.|..||+.+
T Consensus 385 ~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t 464 (689)
T 1yiq_A 385 FWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK 464 (689)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred cccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence 01126778887777654210 000 0148899999999
Q ss_pred CceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc
Q 019847 271 MTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 319 (335)
++.+-+++.+.. ...-.+...+.+++.++.||.++.||..+++..-+.
T Consensus 465 G~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~ 512 (689)
T 1yiq_A 465 QQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQ 512 (689)
T ss_dssp TEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceee
Confidence 999888765443 334456667779999999999999999998765443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-10 Score=95.62 Aligned_cols=220 Identities=10% Similarity=0.043 Sum_probs=146.8
Q ss_pred CceEEEe-cCCeEEEEEecCC----ceeeEEe---e--cCCCCCceEEEEcCCCCEEEEEECC------CcEEEEeCCCc
Q 019847 27 NNVLAVA-LGPVLFLWKWENG----KVKKLLQ---V--PGEDDYPTSVSWSHDAKTLAVGYMD------SKLQLWDAETS 90 (335)
Q Consensus 27 ~~~~~~~-~~~~i~vw~~~~~----~~~~~~~---~--~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~ 90 (335)
..+++.+ .++.|+++|+.+. +..+.+. + +........+...|+| .++++..+ |.|.++|.+++
T Consensus 96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~ 174 (462)
T 2ece_A 96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF 174 (462)
T ss_dssp CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC
T ss_pred CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC
Confidence 3444444 6789999998755 3333331 1 0011235667888999 66666555 78999999999
Q ss_pred eeEeeecccccc---eeEeeecCCCCCEEEEee-------------------CCCcEEEEecccCCeeeEEeecC-C-CC
Q 019847 91 KLVRNLEGHHRR---VATSSWNHWNGHILTSGS-------------------KDKSIINHDVRVSNNVTSCIKAH-S-GE 146 (335)
Q Consensus 91 ~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~-------------------~dg~i~~~d~~~~~~~~~~~~~~-~-~~ 146 (335)
+.+..+.....+ -..+.|+| +.+.+++.. ...+|.+||+.+. +....+..- . ..
T Consensus 175 ~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-k~~~tI~vg~~g~~ 252 (462)
T 2ece_A 175 EPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-KRIHSLTLGEENRM 252 (462)
T ss_dssp CEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-EEEEEEESCTTEEE
T ss_pred eEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-cEeeEEecCCCCCc
Confidence 999988733222 33577899 888888875 3689999999865 444444432 1 23
Q ss_pred EEEEEe--ecCCCEEEEEeC------CCeEEEEEccCCCcccceeec--cC----------------CCCCeeEEEecCC
Q 019847 147 VCGLKW--SNEGNLLASGGD------DNVVRIWERSKMSSSKSLHRF--TD----------------HCGGVKALAWSPH 200 (335)
Q Consensus 147 i~~~~~--~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~--~~----------------~~~~v~~~~~~~~ 200 (335)
...+.| +|+++++.++.. +++|.+|..+.+ .....+.+ .. -......+.++||
T Consensus 253 P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g-~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 253 ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG-KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT-EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC-ceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 455655 999998887774 568877665431 11111111 00 0234678999999
Q ss_pred CCcEEEEecCCCCCeEEEEECCC---CceEEEeecCC---------------cEeEEEeCCCCceeeeee
Q 019847 201 QVNVLATGGGREDGCIKIWNVQK---GTCIHGIDAKA---------------QICGLEWNRHHKEILSGH 252 (335)
Q Consensus 201 ~~~~~~~~~g~~d~~i~i~d~~~---~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~ 252 (335)
+++|+++.- ..+.|.+||+.. .+.+..+...+ ....++++|+|+++++..
T Consensus 332 GrfLYVSnr--g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLW--GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCEEEEEET--TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEeC--CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999886 678999999853 35566665542 258899999999998875
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-10 Score=95.67 Aligned_cols=264 Identities=13% Similarity=0.077 Sum_probs=160.7
Q ss_pred eeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeeccc
Q 019847 20 KVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99 (335)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 99 (335)
.++...++..+.++.++ +..+|. +++....... .........+. +..+.+++.++.|..+|.. ++........
T Consensus 63 ~~~~~~~~g~l~v~t~~-l~~~d~-~g~~~~~~~~--~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~ 135 (330)
T 3hxj_A 63 CRPSIGKDGTIYFGSDK-VYAINP-DGTEKWRFDT--KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTK 135 (330)
T ss_dssp ECCEETTTTEECCSSCE-EEEECC-CGGGGGGSCC-------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECS
T ss_pred cceEEecCCcEEEecCc-EEEECC-CCcEEEEEEC--CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCC
Confidence 34444433333333334 777775 4443222221 12222223333 5567888889999999988 7776666655
Q ss_pred ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcc
Q 019847 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSS 179 (335)
Q Consensus 100 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 179 (335)
...+.++...+ ++. ++.++.++.+..+|.. +... .........+.++...+++.+++ ++ +.|..+| .++
T Consensus 136 ~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~-~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g--- 204 (330)
T 3hxj_A 136 KAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEK-WRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDG--- 204 (330)
T ss_dssp SCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEE-EEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTS---
T ss_pred CceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEe-EEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCC---
Confidence 55566666654 444 6667888999999987 5443 33333445566677777777554 44 7789999 433
Q ss_pred cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCc-EeEEEeCCCCceeeeeeeeeeec
Q 019847 180 KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ-ICGLEWNRHHKEILSGHGFSASG 258 (335)
Q Consensus 180 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 258 (335)
+.+.........+.++...+++. +.+.. .++.+..+| .+++.+..+..... ...+...+++...+ + +
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~-l~v~t---~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~------t 272 (330)
T 3hxj_A 205 TEKWNFYAGYWTVTRPAISEDGT-IYVTS---LDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTDTIYF-G------S 272 (330)
T ss_dssp CEEEEECCSSCCCSCCEECTTSC-EEEEE---TTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTSCEEE-E------C
T ss_pred cEEEEEccCCcceeceEECCCCe-EEEEc---CCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCCeEEE-e------c
Confidence 22333333445678888888874 54443 578888888 45666666654432 34455555665433 3 5
Q ss_pred CCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 019847 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 259 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
.++.+..+|. +++.+..+......+.++...++++ |..++.+|.+++......+.
T Consensus 273 ~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~~ 327 (330)
T 3hxj_A 273 YDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHHH 327 (330)
T ss_dssp TTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC-----
T ss_pred CCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccccc
Confidence 5778999995 6777666655556677888888886 55688999999987776544
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-11 Score=103.75 Aligned_cols=266 Identities=8% Similarity=0.050 Sum_probs=181.5
Q ss_pred cccceeeeecC-----CceEEEe-cCCeEEEEEecCCceeeEEeecCCCCCceEEEE-c-CCCCEEEEEE----------
Q 019847 16 DYYSKVIDWGR-----NNVLAVA-LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSW-S-HDAKTLAVGY---------- 77 (335)
Q Consensus 16 ~~~~~~~~~~~-----~~~~~~~-~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~---------- 77 (335)
+..-..+++.+ ..+++.. .++.|.+.|+++.+..+++.++.- ..+..+++ + |+++++++++
T Consensus 86 d~hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg 164 (595)
T 1fwx_A 86 DLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGEDETPLVNDG 164 (595)
T ss_dssp CBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred CCCccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-CCCcceeeeecCCCcEEEEecccccccCCCC
Confidence 44445566632 3344433 456899999999998887776543 34788888 5 9999998885
Q ss_pred --------CCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCC---------------cEEEEecccCC
Q 019847 78 --------MDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK---------------SIINHDVRVSN 134 (335)
Q Consensus 78 --------~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------------~i~~~d~~~~~ 134 (335)
.++.+.+.|.++.+...++.... ....++++| +++++++.+.+. .+.+.|.....
T Consensus 165 ~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~ 242 (595)
T 1fwx_A 165 TNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 242 (595)
T ss_dssp SSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred cccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence 24579999999999888887433 567788999 888888887653 24444432211
Q ss_pred eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccc-eeeccCCCCCeeEEEecCCCCcEEEEecCCCC
Q 019847 135 NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS-LHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213 (335)
Q Consensus 135 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 213 (335)
. +.++|++... +.|.+.|.++.. ... +..+.. .....++.++|||+++++++. .+
T Consensus 243 ~----------------~v~~Gk~~~i----~~V~VID~~~~~-~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~--~s 298 (595)
T 1fwx_A 243 K----------------AIAAGDYQEL----NGVKVVDGRKEA-SSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGK--LS 298 (595)
T ss_dssp H----------------HHHHTCSEEE----TTEEEEECSGGG-CCSSEEEEEE-ESSCCCEEECTTSSEEEEECT--TS
T ss_pred E----------------eccCCCeeEE----CcEEEEeCcccC-CceeEEEEec-CCCceEEEEcCCCCEEEEeCC--CC
Confidence 1 2234444332 459999987621 112 222221 234567999999999999876 78
Q ss_pred CeEEEEECCCCc------------eEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC----------C
Q 019847 214 GCIKIWNVQKGT------------CIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN----------M 271 (335)
Q Consensus 214 ~~i~i~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~----------~ 271 (335)
.+|.++|+.+.+ ....++.......++|+|+| .+.+.. .-+++|.+||+.+ .
T Consensus 299 ~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~-----~ldsqV~kwdi~~a~~~~~g~~~~ 372 (595)
T 1fwx_A 299 PTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSL-----FLDSQVVKWNIEDAIRAYAGEKVD 372 (595)
T ss_dssp SBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEE-----TTTTEEEEEEHHHHHHHHHTCSCC
T ss_pred CeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEE-----ecCCcEEEEEhhHhhhhhcccccc
Confidence 999999998653 45566667788999999999 554432 5699999999877 5
Q ss_pred ceeecccCCCCc-----eeEeEEcCCCCEEEEEeC---CCc----------EEEEecCCCC
Q 019847 272 TKVGELQSSNSR-----ILDLSQSPDGLTVATAGA---DET----------IRFWEAFGPS 314 (335)
Q Consensus 272 ~~~~~~~~~~~~-----i~~~~~~~~~~~l~~~~~---dg~----------v~iw~~~~~~ 314 (335)
+.+.++..|-.+ -..+.++|||++|+++.. |.. -.++|+.+.+
T Consensus 373 ~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 373 PIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 566666655432 133467899999998853 433 1788886544
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-13 Score=112.80 Aligned_cols=204 Identities=10% Similarity=0.018 Sum_probs=113.9
Q ss_pred CCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCC-CE
Q 019847 69 DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSG-EV 147 (335)
Q Consensus 69 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~i 147 (335)
++..+++++.||.|+.||..+|+.+..+.. ..+.+..+.. ++..+++++.||.|+.||..+++.... ...+.. .+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~-~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTK-LPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEE-CSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeee-eeccCcccc
Confidence 677899999999999999999999988875 5555555555 677888889999999999987665332 211110 00
Q ss_pred E-EEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce
Q 019847 148 C-GLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC 226 (335)
Q Consensus 148 ~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 226 (335)
. +..+. .+..+++++.|+.++.||.++++. +..+..+. ...++|++..+++.+ .|+.|+.||.++|+.
T Consensus 84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~---~w~~~~~~----~~~~~p~~~~v~~~~---~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEK---QQTLSSAF----ADSLSPSTSLLYLGR---TEYTITMYDTKTREL 152 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC-----------------------------EEEEE---EEEEEECCCSSSSSC
T ss_pred ccCceEe-cCCEEEEEeCCCEEEEEECCCCcE---EEEecCCC----cccccccCCEEEEEe---cCCEEEEEECCCCCE
Confidence 0 00111 345677888899999999887543 33333222 234566665555543 689999999999987
Q ss_pred EEEeecCCcEeEEEeCCCC---ceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCC
Q 019847 227 IHGIDAKAQICGLEWNRHH---KEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGL 294 (335)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 294 (335)
+..++... .....+.++. ..++++ +.++.++.||..+++.+.+.......+....+++++.
T Consensus 153 ~W~~~~~~-~~~~~~~~~~~~~~~v~~~------~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 153 RWNATYFD-YAASLPEDDVDYKMSHFVS------NGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp CCEEEEEE-ECCBCCCCCTTCCCCEEEE------ETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred EEeEeccc-ccCccccCCccccceEEEE------CCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 76654321 2223333322 333333 5689999999999998877653332233345556664
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.6e-11 Score=97.98 Aligned_cols=224 Identities=9% Similarity=-0.051 Sum_probs=140.9
Q ss_pred cEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEee----------CCCcEEEEecccCCeeeEEeec--C----C
Q 019847 81 KLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS----------KDKSIINHDVRVSNNVTSCIKA--H----S 144 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~~~d~~~~~~~~~~~~~--~----~ 144 (335)
.|.++|..+++.+..+.....+ .+.++| +++.++++. .++.|.+||+.+.+.......+ . .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 7889999999999998866666 799999 888887775 4789999999987765443222 0 1
Q ss_pred CCEEEEEeecCCCEEEEEeC--CCeEEE--EEccCCCcccceeec------c---------CCCCCeeEEEe--------
Q 019847 145 GEVCGLKWSNEGNLLASGGD--DNVVRI--WERSKMSSSKSLHRF------T---------DHCGGVKALAW-------- 197 (335)
Q Consensus 145 ~~i~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~------~---------~~~~~v~~~~~-------- 197 (335)
.....++++|||++++++.. +..+.+ +|+.+ ...+..- . ...+.+..+..
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~ 200 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAG 200 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCC
Confidence 23457899999999999875 457888 88754 1111100 0 00000100110
Q ss_pred ------------------cCCCCcEEEEecCCCCCeEEEEECCCCc--eEEEeecC-----------CcEeEEEeCCCCc
Q 019847 198 ------------------SPHQVNVLATGGGREDGCIKIWNVQKGT--CIHGIDAK-----------AQICGLEWNRHHK 246 (335)
Q Consensus 198 ------------------~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~~-----------~~~~~~~~~~~~~ 246 (335)
.+++..++.+. . +.+.+.|+.... .+..+... .....+.++|+++
T Consensus 201 ~v~~~~t~~i~vg~~P~~~~~~~~~~~vs---~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~ 276 (368)
T 1mda_H 201 IVGAQCTGAQNCSSQAAQANYPGMLVWAV---A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD 276 (368)
T ss_dssp ECCCCSCTTSCBCSCCEEETTTTEEEECB---S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT
T ss_pred eEEEEeeeeeeCCCCccccccCCEEEEEc---C-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC
Confidence 12222222221 3 556666664322 22222111 1112267999998
Q ss_pred eeeeeeeeeeec-C-----CCeEEEEECCCCceeecccCCCCceeEeEEcCCCCE-EEEEe-CCCcEEEEecCCCCCCCC
Q 019847 247 EILSGHGFSASG-D-----GNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLT-VATAG-ADETIRFWEAFGPSGDED 318 (335)
Q Consensus 247 ~~~~~~~~~~~~-~-----~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~-~dg~v~iw~~~~~~~~~~ 318 (335)
.++....- . . ++.+.++|+.+.+.+..+.... ....++|+|||++ +++.. .++.|.++|+.+.+....
T Consensus 277 ~lyV~~~~---~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~ 352 (368)
T 1mda_H 277 GIMILTVE---HSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS 352 (368)
T ss_dssp EEEEEEEE---CSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred EEEEEecc---ccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEE
Confidence 88764210 0 1 2356699999999998887544 5789999999974 55555 589999999998765543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-09 Score=95.29 Aligned_cols=284 Identities=11% Similarity=0.111 Sum_probs=174.6
Q ss_pred eeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC--CCCEEEEEEC------CCcEEEEeCCCceeE
Q 019847 22 IDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH--DAKTLAVGYM------DSKLQLWDAETSKLV 93 (335)
Q Consensus 22 ~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~------dg~i~iw~~~~~~~~ 93 (335)
+...++.+++++.++.|..+|.++|+..-......... ...+.-+| .+..++++.. +|.|..+|.++|+.+
T Consensus 113 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~-~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 191 (668)
T 1kv9_A 113 VALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAK-PYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLA 191 (668)
T ss_dssp CEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTS-SCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred eEEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCC-cceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEE
Confidence 34456778888889999999999999876655432110 01111111 2345555543 589999999999998
Q ss_pred eeecccc---c----------------------------ceeEeeecCCCCCEEEEeeCCC-------------------
Q 019847 94 RNLEGHH---R----------------------------RVATSSWNHWNGHILTSGSKDK------------------- 123 (335)
Q Consensus 94 ~~~~~~~---~----------------------------~v~~~~~~~~~~~~l~~~~~dg------------------- 123 (335)
..+.... . ....+++.+ ...+++.+..++
T Consensus 192 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~ 270 (668)
T 1kv9_A 192 WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLS 270 (668)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence 7765211 0 012356777 677888887766
Q ss_pred cEEEEecccCCeeeEEeec-CC-------CCEEEEEeecCCC---EEEEEeCCCeEEEEEccCCCccccee--------e
Q 019847 124 SIINHDVRVSNNVTSCIKA-HS-------GEVCGLKWSNEGN---LLASGGDDNVVRIWERSKMSSSKSLH--------R 184 (335)
Q Consensus 124 ~i~~~d~~~~~~~~~~~~~-~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~--------~ 184 (335)
.|..+|.++++..-..... |. .+.....+..+++ .++.++.+|.++++|.++++...... .
T Consensus 271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~ 350 (668)
T 1kv9_A 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK 350 (668)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccc
Confidence 3999999988765443322 22 2333333334665 68889999999999987754321100 0
Q ss_pred ccCC-CCC------------------------eeEEEecCCCCcEEEEe-------------------------------
Q 019847 185 FTDH-CGG------------------------VKALAWSPHQVNVLATG------------------------------- 208 (335)
Q Consensus 185 ~~~~-~~~------------------------v~~~~~~~~~~~~~~~~------------------------------- 208 (335)
+... ..+ -..++++|+...+++..
T Consensus 351 ~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 430 (668)
T 1kv9_A 351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD 430 (668)
T ss_dssp ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred cccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCC
Confidence 0000 000 01256777665444311
Q ss_pred --cCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCce-e
Q 019847 209 --GGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRI-L 285 (335)
Q Consensus 209 --~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i-~ 285 (335)
....+|.|..||+.+++.+...+...+.....+...+..++.+ +.++.++.||.++++.+..++...+.. .
T Consensus 431 ~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g------~~dg~l~a~d~~tG~~l~~~~~~~~~~~~ 504 (668)
T 1kv9_A 431 VPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQG------TAAGQMHAYSADKGEALWQFEAQSGIVAA 504 (668)
T ss_dssp CCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE------CTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred CCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEE------CCcccchhhhhhcChhheEecCCCCcccC
Confidence 0013488999999999998888766555444444556666655 679999999999999998876543211 2
Q ss_pred EeEEcCCCC-EEEEEeC--------------------CCcEEEEecCCC
Q 019847 286 DLSQSPDGL-TVATAGA--------------------DETIRFWEAFGP 313 (335)
Q Consensus 286 ~~~~~~~~~-~l~~~~~--------------------dg~v~iw~~~~~ 313 (335)
-+.+..+|+ +++.++. .+.|.++.+...
T Consensus 505 p~~~~~~G~~yva~~~G~g~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~ 553 (668)
T 1kv9_A 505 PMTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGK 553 (668)
T ss_dssp CEEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCC
T ss_pred ceEEEECCEEEEEEEecCCCccccccccccccccCCCCCeEEEEEcCcc
Confidence 334455665 4444432 347888887653
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-09 Score=89.58 Aligned_cols=216 Identities=11% Similarity=0.053 Sum_probs=139.9
Q ss_pred ccceeeeecC-CceEEEec------CCeEEEEEecCCceeeEEeecC----CCCCceEEEEcCCCCEE-EEEE---CCCc
Q 019847 17 YYSKVIDWGR-NNVLAVAL------GPVLFLWKWENGKVKKLLQVPG----EDDYPTSVSWSHDAKTL-AVGY---MDSK 81 (335)
Q Consensus 17 ~~~~~~~~~~-~~~~~~~~------~~~i~vw~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l-~~~~---~dg~ 81 (335)
..+..+++++ ++++++.. ++.|.+||+.+++....+.++. +...+..++++|++..+ ++.. .++.
T Consensus 67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~ 146 (343)
T 2qe8_A 67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA 146 (343)
T ss_dssp SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE
T ss_pred eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe
Confidence 4577788887 45666543 4799999999998766666532 23457899999865555 4444 5789
Q ss_pred EEEEeCCCceeEeeeccccccee-EeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEE
Q 019847 82 LQLWDAETSKLVRNLEGHHRRVA-TSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLA 160 (335)
Q Consensus 82 i~iw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 160 (335)
|.+||+.+++..+.+..|..... ...+.+ ++..+.+.+.++.+..|. ..+..++|+|+++.|+
T Consensus 147 i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly 210 (343)
T 2qe8_A 147 LIRVDLQTGLAARVLQGYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLY 210 (343)
T ss_dssp EEEEETTTCCEEEECTTCTTTSCCSCCCEE-TTEECBEECTTSCEECCC---------------CCEEEEEECTTSCEEE
T ss_pred EEEEECCCCCEEEEecCCCcccccccceeE-CCEEEEeccCCCceecee---------------cccceeEeccCCCEEE
Confidence 99999998887776654422111 134444 666666667777665442 2367899999999888
Q ss_pred EEeCCC-eEEEEEccCCCc-----cccee--eccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec
Q 019847 161 SGGDDN-VVRIWERSKMSS-----SKSLH--RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA 232 (335)
Q Consensus 161 ~~~~dg-~i~iwd~~~~~~-----~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 232 (335)
.+..++ .+..++...... .+... ...++......++++++| .++++.. .++.|.+||.++++.......
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~--~~~~V~~~d~~~G~~~~~~~~ 287 (343)
T 2qe8_A 211 LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDH-NIYVGDL--AHSAIGVITSADRAYKLLVTD 287 (343)
T ss_dssp EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEG--GGTEEEEEETTTTEEEEEEEC
T ss_pred EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCC-CEEEEcc--CCCeEEEEECCCCCEEEEEEC
Confidence 887766 555555321100 00000 111233456779999998 4666655 689999999856764433332
Q ss_pred --CCcEeEEEeCCCCceeeee
Q 019847 233 --KAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 233 --~~~~~~~~~~~~~~~~~~~ 251 (335)
...+..+++.+++..+++.
T Consensus 288 ~~~~~p~~va~~~~g~l~v~~ 308 (343)
T 2qe8_A 288 EKLSWTDSFNFGSDGYLYFDC 308 (343)
T ss_dssp GGGSCEEEEEECTTSCEEEEE
T ss_pred CceecCCeeEECCCCcEEEEe
Confidence 2357889998887766654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.3e-09 Score=86.64 Aligned_cols=249 Identities=9% Similarity=-0.024 Sum_probs=149.9
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec--------------------ccccceeEeeecCCC
Q 019847 53 QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE--------------------GHHRRVATSSWNHWN 112 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--------------------~~~~~v~~~~~~~~~ 112 (335)
.+++.-....++++.++++++.++..++.|..|+..+++... +. .....+..+++.+ +
T Consensus 13 ~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~ 90 (322)
T 2fp8_A 13 LIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-Q 90 (322)
T ss_dssp EEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-T
T ss_pred ecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcC-C
Confidence 344433456789999999888888889999999987654332 21 0113567888886 3
Q ss_pred CCEEEEeeCCCcEEEEecccCCeeeEEe---ec-CCCCEEEEEeec-CCCEEEEEeC-----------------CCeEEE
Q 019847 113 GHILTSGSKDKSIINHDVRVSNNVTSCI---KA-HSGEVCGLKWSN-EGNLLASGGD-----------------DNVVRI 170 (335)
Q Consensus 113 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~-~~~~i~~~~~~~-~~~~l~~~~~-----------------dg~i~i 170 (335)
...|+.+...+.+..+|..++. ..... .+ .......+++.+ +|++.++-.. ++.|..
T Consensus 91 ~g~l~v~d~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 91 NNQLYIVDCYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp TTEEEEEETTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred CCcEEEEECCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence 3445555555558888876332 11111 10 123478899999 8887766432 367888
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc--eEEEe-ecCCcEeEEEeCCCCce
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT--CIHGI-DAKAQICGLEWNRHHKE 247 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~-~~~~~~~~~~~~~~~~~ 247 (335)
+|...... ..+.........++++|++..++++.. .++.|..|++.... ....+ .... ...++++++|..
T Consensus 170 ~d~~~~~~----~~~~~~~~~p~gia~~~dg~~lyv~d~--~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l 242 (322)
T 2fp8_A 170 YDPSTKET----TLLLKELHVPGGAEVSADSSFVLVAEF--LSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHF 242 (322)
T ss_dssp EETTTTEE----EEEEEEESCCCEEEECTTSSEEEEEEG--GGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCE
T ss_pred EeCCCCEE----EEeccCCccCcceEECCCCCEEEEEeC--CCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCE
Confidence 88654321 111111123567999999987777754 57899999987521 11111 2233 778999999986
Q ss_pred eeeeeeeee----ecCCCeEEEEECCCCceeecccCCC----CceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 248 ILSGHGFSA----SGDGNKLCLWKYPNMTKVGELQSSN----SRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 248 ~~~~~~~~~----~~~~~~i~i~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
.++...... .+..+.|..+|. .++.+..+.... ..++.+++ .+++++++...++.|..+++...
T Consensus 243 ~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 243 WVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred EEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 655421000 001356788886 466665554332 34666666 46666666667889999988644
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-10 Score=94.36 Aligned_cols=253 Identities=11% Similarity=0.051 Sum_probs=160.3
Q ss_pred cCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeeccccccee
Q 019847 25 GRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVA 104 (335)
Q Consensus 25 ~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~ 104 (335)
.++.+.+++.++.|..|| .+++...... .+...+.++...+++. +.+++.+ |..+|. +++....+........
T Consensus 29 ~~g~l~v~t~~~~l~~~d-~~g~~~~~~~--~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~ 101 (330)
T 3hxj_A 29 KNGTIYLGSSNKNLYAIN-TDGSVKWFFK--SGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVS 101 (330)
T ss_dssp TTSCEECSSTTTTTEEEC-TTSCEEESSC--GGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----C
T ss_pred cCCeEEEEcCCCEEEEEC-CCCcEEEEEe--cCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCccc
Confidence 345677777788999999 8887643322 2233456666666664 5555444 888886 6666555543333333
Q ss_pred EeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceee
Q 019847 105 TSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHR 184 (335)
Q Consensus 105 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 184 (335)
..... +..+..++.++.+..+|.. +.... ........+.++...+++. +..++.++.|..+|.. +. .+..
T Consensus 102 ~~~~~---~~~l~v~t~~~~l~~~d~~-g~~~~-~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~---~~~~ 171 (330)
T 3hxj_A 102 DFTIF---EDILYVTSMDGHLYAINTD-GTEKW-RFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GT---EKWR 171 (330)
T ss_dssp CEEEE---TTEEEEECTTSEEEEECTT-SCEEE-EEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SC---EEEE
T ss_pred CceEE---CCEEEEEecCCEEEEEcCC-CCEEE-EEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CC---EeEE
Confidence 33332 5567778889999999987 55433 3333444456666666766 6667778999999966 32 2333
Q ss_pred ccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeE
Q 019847 185 FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKL 263 (335)
Q Consensus 185 ~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (335)
.......+.++...+++. +++. . +.+..+| .+++.+...... ..+.++...+++...+. +.++.+
T Consensus 172 ~~~~~~~~~~~~~d~~g~-l~v~----t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~-------t~~~gl 237 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDGT-IYFG----S-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVT-------SLDGHL 237 (330)
T ss_dssp EECSSCCCSCCEECTTCC-EEEE----S-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEE-------ETTTEE
T ss_pred EecCCCceeeeEEcCCCE-EEEE----e-CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEE-------cCCCeE
Confidence 333345567777777774 4442 3 8899999 777777666543 45777888888765543 346888
Q ss_pred EEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 264 CLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 264 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
..+| .+++.+..+......+..+.+.+++. |..++.+|.|..+|.
T Consensus 238 ~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 238 YAIN-PDGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp EEEC-TTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT
T ss_pred EEEC-CCCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC
Confidence 8887 45666655554444455666666664 666778888888885
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.3e-08 Score=78.37 Aligned_cols=233 Identities=9% Similarity=0.029 Sum_probs=143.4
Q ss_pred CEEEEEECCCcEEEEeCCCceeE-----eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCC
Q 019847 71 KTLAVGYMDSKLQLWDAETSKLV-----RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSG 145 (335)
Q Consensus 71 ~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 145 (335)
++|+.+.. +.|+.+++...... ..+......+..++|++.++.++++-..++.|..+++..... .........
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEECCCC
Confidence 45555553 47888888754321 112222346789999984455666666778999999875432 333323335
Q ss_pred CEEEEEeecCCCEEEEE-eCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC
Q 019847 146 EVCGLKWSNEGNLLASG-GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224 (335)
Q Consensus 146 ~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 224 (335)
....+++++++..|..+ ...+.|.++++.... ...+ ..........++++|++..++.+..+...+.|..+++...
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~--~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~ 156 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVL--FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT 156 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEE--ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEE--EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC
Confidence 67899999975555544 456789999976422 1111 1112245789999997777777764112478988887643
Q ss_pred ceEEEee--cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCC
Q 019847 225 TCIHGID--AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302 (335)
Q Consensus 225 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 302 (335)
....+. .-.....+++++++..++... ...+.|.++|.........+.. ......++.. ++.++++...+
T Consensus 157 -~~~~~~~~~~~~P~gia~d~~~~~lyv~d-----~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~ 228 (267)
T 1npe_A 157 -NRRILAQDNLGLPNGLTFDAFSSQLCWVD-----AGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKT 228 (267)
T ss_dssp -CCEEEECTTCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTT
T ss_pred -CcEEEEECCCCCCcEEEEcCCCCEEEEEE-----CCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCC
Confidence 223332 224578899999887775542 5578999999876543333332 2234566654 34444444456
Q ss_pred CcEEEEecCCCCCC
Q 019847 303 ETIRFWEAFGPSGD 316 (335)
Q Consensus 303 g~v~iw~~~~~~~~ 316 (335)
+.|..++..+++..
T Consensus 229 ~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 229 NSVIAMDLAISKEM 242 (267)
T ss_dssp TEEEEEETTTTEEE
T ss_pred CeEEEEeCCCCCce
Confidence 88999998876543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=4.1e-09 Score=94.54 Aligned_cols=285 Identities=12% Similarity=0.037 Sum_probs=174.8
Q ss_pred cCCceEEEecCCeEEEEEecCCceeeEEeecCCC--------CCc-eEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee
Q 019847 25 GRNNVLAVALGPVLFLWKWENGKVKKLLQVPGED--------DYP-TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN 95 (335)
Q Consensus 25 ~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~--------~~v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 95 (335)
.++.+++++.++.|.-+|..+|+.+-.+...... ..+ ..+++ .+..+++++.|+.|..+|.++|+.+..
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 3466778888899999999999976555432110 000 11222 356788888999999999999999887
Q ss_pred eccccc----ceeE-eeecCCCCCEEEEeeC------CCcEEEEecccCCeeeEEeec--CC------------------
Q 019847 96 LEGHHR----RVAT-SSWNHWNGHILTSGSK------DKSIINHDVRVSNNVTSCIKA--HS------------------ 144 (335)
Q Consensus 96 ~~~~~~----~v~~-~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~--~~------------------ 144 (335)
+..... .+.+ ... .+..++.+.. +|.|..+|.++++.+-+.... ..
T Consensus 143 ~~~~~~~~~~~~~~~P~v---~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 219 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRV---VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG 219 (668)
T ss_dssp EECSCTTSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred eccCCCCCcceecCCCEE---ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence 764211 1111 111 1334555543 589999999988765443211 00
Q ss_pred ----------CCEEEEEeecCCCEEEEEeCCCe-------------------EEEEEccCCCcccceeeccCCC------
Q 019847 145 ----------GEVCGLKWSNEGNLLASGGDDNV-------------------VRIWERSKMSSSKSLHRFTDHC------ 189 (335)
Q Consensus 145 ----------~~i~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~------ 189 (335)
.....+++.|+...++.++.++. |..+|.++++..-..+. ..|.
T Consensus 220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~-~~~~~wd~~~ 298 (668)
T 1kv9_A 220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV-TPGDSWDFTA 298 (668)
T ss_dssp SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES-STTCCSCCCC
T ss_pred cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeec-CCCccccccC
Confidence 01124678888888888877763 88899877543222221 1121
Q ss_pred -CCeeEEEecCCCC--cEEEEecCCCCCeEEEEECCCCceEEEeecCC-------------cE-----------------
Q 019847 190 -GGVKALAWSPHQV--NVLATGGGREDGCIKIWNVQKGTCIHGIDAKA-------------QI----------------- 236 (335)
Q Consensus 190 -~~v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-------------~~----------------- 236 (335)
.+.....+..+++ .+++.++ .+|.++++|.++|+.+...+... ++
T Consensus 299 ~~~~~~~d~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~ 376 (668)
T 1kv9_A 299 TQQITLAELNIDGKPRKVLMQAP--KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPS 376 (668)
T ss_dssp CSCEEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSC
T ss_pred CCCcEEEEeccCCcEEEEEEEEC--CCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCC
Confidence 2222222333453 2455554 89999999999999885443211 00
Q ss_pred -------eEEEeCCCCceeeeeee------------------ee------------eecCCCeEEEEECCCCceeecccC
Q 019847 237 -------CGLEWNRHHKEILSGHG------------------FS------------ASGDGNKLCLWKYPNMTKVGELQS 279 (335)
Q Consensus 237 -------~~~~~~~~~~~~~~~~~------------------~~------------~~~~~~~i~i~d~~~~~~~~~~~~ 279 (335)
..++++|+...++.... +. ....++.|..||..+++.+-+...
T Consensus 377 ~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~ 456 (668)
T 1kv9_A 377 PFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY 456 (668)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE
T ss_pred CccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC
Confidence 12566776665543210 00 112358899999999998877654
Q ss_pred CCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 280 SNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 280 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
+. +.....+...+.+++.++.||.++.||..+++...+
T Consensus 457 ~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~ 494 (668)
T 1kv9_A 457 PT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ 494 (668)
T ss_dssp SS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheE
Confidence 33 233344555677899999999999999998765543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-07 Score=77.01 Aligned_cols=229 Identities=6% Similarity=0.003 Sum_probs=140.0
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCC--cEEEEecccCCee
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK--SIINHDVRVSNNV 136 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~ 136 (335)
.....++|+++++++++-..++.|..||.... ....+. ....+..+++.+ +++++++..... .|..+|..++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~- 107 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTV- 107 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCE-
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeE-
Confidence 45788999999986666667899999997753 333332 345688999998 788666554332 466667655442
Q ss_pred eEEee-cCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccce------e--eccCCCCCeeEEEecCCCCcEEEE
Q 019847 137 TSCIK-AHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL------H--RFTDHCGGVKALAWSPHQVNVLAT 207 (335)
Q Consensus 137 ~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~--~~~~~~~~v~~~~~~~~~~~~~~~ 207 (335)
..... ........++..+++..+++-..++.|+.+|...... +.. . .....-.....+ +|++..++++
T Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~-~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~ 184 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG-SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVS 184 (306)
T ss_dssp EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE-EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEE
T ss_pred EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE-eEEEECCccccccccCCCCcCCCc--CcCCCEEEEE
Confidence 22211 1223345555555554455444588899998653210 000 0 001111234455 7888888887
Q ss_pred ecCCCCCeEEEEECCC-Cce--EEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce--eecccCCCC
Q 019847 208 GGGREDGCIKIWNVQK-GTC--IHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK--VGELQSSNS 282 (335)
Q Consensus 208 ~~g~~d~~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~--~~~~~~~~~ 282 (335)
.. ..+.|..+++.. ++. ...+........++++++|+..++. ...+.|.++|.. ++. +..+.....
T Consensus 185 d~--~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~------~~~~~V~~~~~~-G~~~~~~~~~~~~~ 255 (306)
T 2p4o_A 185 NT--EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGAT------HIYNSVVRIAPD-RSTTIIAQAEQGVI 255 (306)
T ss_dssp ET--TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEEC------BTTCCEEEECTT-CCEEEEECGGGTCT
T ss_pred eC--CCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEe------CCCCeEEEECCC-CCEEEEeecccccC
Confidence 76 788999999874 321 1222222346678899999765543 447889999975 554 323443335
Q ss_pred ceeEeEEc---CCCCEEEEEeCCC
Q 019847 283 RILDLSQS---PDGLTVATAGADE 303 (335)
Q Consensus 283 ~i~~~~~~---~~~~~l~~~~~dg 303 (335)
..++++|. |+++.|+.++..+
T Consensus 256 ~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 256 GSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TEEEEEECCSTTTTTEEEEEECTT
T ss_pred CceEEEEecccCCCCEEEEECCCC
Confidence 68899998 8877777665543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-08 Score=87.91 Aligned_cols=282 Identities=10% Similarity=0.032 Sum_probs=170.1
Q ss_pred CCceEEEec-CCeEEEEEe-cCCceeeEEeecCCCC--------C-ceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEe
Q 019847 26 RNNVLAVAL-GPVLFLWKW-ENGKVKKLLQVPGEDD--------Y-PTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR 94 (335)
Q Consensus 26 ~~~~~~~~~-~~~i~vw~~-~~~~~~~~~~~~~~~~--------~-v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 94 (335)
++.+++++. ++.|.-+|. .+++.+-.+....... . -..++. .+..+++++.|+.+..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 456777777 789999999 8998765554432110 0 011222 45678888889999999999999887
Q ss_pred eeccccc----ceeE-eeecCCCCCEEEEeeC------CCcEEEEecccCCeeeEEeecCCC------------------
Q 019847 95 NLEGHHR----RVAT-SSWNHWNGHILTSGSK------DKSIINHDVRVSNNVTSCIKAHSG------------------ 145 (335)
Q Consensus 95 ~~~~~~~----~v~~-~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~------------------ 145 (335)
....... .+.+ ... .+..++.++. ++.|..+|.++++.+-+.......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~ 216 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV---AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE---ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred EecCCCCCccceeccCCEE---ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence 7653221 1211 111 1334555554 789999999988765443221100
Q ss_pred ------------------CE-EEEEeecCCCEEEEEeCC----------------CeEEEEEccCCCcccceeeccCC--
Q 019847 146 ------------------EV-CGLKWSNEGNLLASGGDD----------------NVVRIWERSKMSSSKSLHRFTDH-- 188 (335)
Q Consensus 146 ------------------~i-~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~-- 188 (335)
.+ ..+++.++...+..+..+ +.|..+|.++++..-..+. ..|
T Consensus 217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~-~~~d~ 295 (571)
T 2ad6_A 217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQK-TPHDE 295 (571)
T ss_dssp SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEES-STTCS
T ss_pred cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecC-CCCcc
Confidence 00 135566766667666532 3588889877543222211 111
Q ss_pred ------CCCeeEEEecCCCC--cEEEEecCCCCCeEEEEECCCCceEEEeecCC--------------cE----------
Q 019847 189 ------CGGVKALAWSPHQV--NVLATGGGREDGCIKIWNVQKGTCIHGIDAKA--------------QI---------- 236 (335)
Q Consensus 189 ------~~~v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~--------------~~---------- 236 (335)
..++. +...++|+ .+++.+. .+|.++++|.++|+.+...+... ++
T Consensus 296 ~d~~~~~~p~l-~~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~ 372 (571)
T 2ad6_A 296 WDFAGVNQMVL-TDQPVNGKMTPLLSHID--RNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMD 372 (571)
T ss_dssp SCCCCCCCCEE-EEEEETTEEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTT
T ss_pred cccccCCCCEE-EecccCCcEEEEEEEeC--CCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCC
Confidence 12221 22224564 3555554 79999999999999887765322 11
Q ss_pred ----------------eEEEeCCCCceeeeeeee-----------------eee--------------cCCCeEEEEECC
Q 019847 237 ----------------CGLEWNRHHKEILSGHGF-----------------SAS--------------GDGNKLCLWKYP 269 (335)
Q Consensus 237 ----------------~~~~~~~~~~~~~~~~~~-----------------~~~--------------~~~~~i~i~d~~ 269 (335)
..++++|+...+++...- ..+ ..++.+..||..
T Consensus 373 ~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~ 452 (571)
T 2ad6_A 373 HKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLT 452 (571)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTT
T ss_pred CCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECC
Confidence 235677777666554210 000 246899999999
Q ss_pred CCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 270 NMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
+++.+.++.... .+....+...+..++.++.||.|+.||..+++..-
T Consensus 453 tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 453 TGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp TCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEE
Confidence 999887765322 23333333345677889999999999998877554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.6e-07 Score=74.69 Aligned_cols=243 Identities=6% Similarity=-0.080 Sum_probs=152.7
Q ss_pred eeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCceeEeeecc
Q 019847 20 KVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETSKLVRNLEG 98 (335)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 98 (335)
.|.+..++.++..+....|+..+++........ .. ...+..++|++.+..|.... ..+.|..+++........+..
T Consensus 37 ~C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~--~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 37 SCKALGPEPVLLFANRIDIRQVLPHRSEYTLLL--NN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp CEEESSSCCEEEEECBSCEEEECTTSCCEEEEE--CS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred cccccccCceeEeecccceEEEeCCCCeeEEee--cC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 445555555666667778888888776654332 22 34578999998766666554 578899999886654443333
Q ss_pred cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEe-CC-CeEEEEEccCC
Q 019847 99 HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGG-DD-NVVRIWERSKM 176 (335)
Q Consensus 99 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-g~i~iwd~~~~ 176 (335)
.......+++.+..++++++-...+.|.+.++..... .............+++.|.+..|.... .. +.|..+++...
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~ 192 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 192 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence 3345677888874666667777778999999874332 233333445678999999655555544 34 77888887642
Q ss_pred CcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeee
Q 019847 177 SSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFS 255 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 255 (335)
.. ..+ ....-.....++++|++..++.+-. ..+.|..+|+........+.. ......+++. .+....+
T Consensus 193 ~~-~~~--~~~~~~~PnGla~d~~~~~lY~aD~--~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~t----- 261 (349)
T 3v64_C 193 GR-RII--ADTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWT----- 261 (349)
T ss_dssp SC-EES--CCSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEE-----
T ss_pred Cc-EEE--EECCCCCcceEEEeCCCCEEEEEEC--CCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEe-----
Confidence 21 111 1122345789999998888888876 678999999875433322322 2345666663 3332222
Q ss_pred eecCCCeEEEEECCCCceeeccc
Q 019847 256 ASGDGNKLCLWKYPNMTKVGELQ 278 (335)
Q Consensus 256 ~~~~~~~i~i~d~~~~~~~~~~~ 278 (335)
....+.|..++..+++....+.
T Consensus 262 -d~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 262 -DWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp -ETTTTEEEEEETTTCCSCEEEE
T ss_pred -cCCCCeEEEEEccCCCccEEec
Confidence 2557788888866665544443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-08 Score=79.26 Aligned_cols=207 Identities=11% Similarity=0.023 Sum_probs=136.1
Q ss_pred ceeEeeeccccc--ceeEeeecCCCCCEEEEeeC--CCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC
Q 019847 90 SKLVRNLEGHHR--RVATSSWNHWNGHILTSGSK--DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD 165 (335)
Q Consensus 90 ~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 165 (335)
.+.+.++. |.. ....+.|++ ++.++++.+. ++.|.++|+.+++.......+.......+++.. ++..++.-.+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTC
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecC
Confidence 34555554 443 357899998 6655555543 579999999987764443222222333455552 2444444567
Q ss_pred CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC------cEeEE
Q 019847 166 NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA------QICGL 239 (335)
Q Consensus 166 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~------~~~~~ 239 (335)
+.+.++|..+.+ .+..+...... ...++++++.++++. .++.|.++|..+.+.+..+.... .+..+
T Consensus 86 ~~v~viD~~t~~---v~~~i~~g~~~--g~glt~Dg~~l~vs~---gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nel 157 (266)
T 2iwa_A 86 NIGFIYDRRTLS---NIKNFTHQMKD--GWGLATDGKILYGSD---GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNEL 157 (266)
T ss_dssp SEEEEEETTTTE---EEEEEECCSSS--CCEEEECSSSEEEEC---SSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred CEEEEEECCCCc---EEEEEECCCCC--eEEEEECCCEEEEEC---CCCeEEEEECCCCcEEEEEEECCCCcccccceeE
Confidence 899999977643 34444322111 233556788888775 37899999999999888887432 35677
Q ss_pred EeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC-------------CCceeEeEEcCCCC-EEEEEeCCCcE
Q 019847 240 EWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS-------------NSRILDLSQSPDGL-TVATAGADETI 305 (335)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~-~l~~~~~dg~v 305 (335)
.|. ++...+. ...++.|.+.|..+++.+..+... ......|+|+|+++ +++++...+.+
T Consensus 158 e~~-dg~lyvn------~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v 230 (266)
T 2iwa_A 158 EYI-NGEVWAN------IWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL 230 (266)
T ss_dssp EEE-TTEEEEE------ETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred EEE-CCEEEEe------cCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence 777 5643332 255889999999999988877532 12458999999975 45556678889
Q ss_pred EEEecCCCC
Q 019847 306 RFWEAFGPS 314 (335)
Q Consensus 306 ~iw~~~~~~ 314 (335)
..-++....
T Consensus 231 ~~i~l~~~~ 239 (266)
T 2iwa_A 231 FEIKLHLVR 239 (266)
T ss_dssp EEEEEEECC
T ss_pred EEEEEeccc
Confidence 988887654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2e-08 Score=78.40 Aligned_cols=198 Identities=9% Similarity=0.077 Sum_probs=134.3
Q ss_pred cceeeeecC-CceEEEec---CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCcee
Q 019847 18 YSKVIDWGR-NNVLAVAL---GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETSKL 92 (335)
Q Consensus 18 ~~~~~~~~~-~~~~~~~~---~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~ 92 (335)
+...+.+++ +.++.++. ++.|.++|..+++....+.+..+. ....+++ +++.|..+. .++.+.++|..+.+.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~-fgeGi~~--~g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY-FGEGLTL--LNEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC-CEEEEEE--ETTEEEEEETTCSEEEEEETTTTEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc-ceEEEEE--eCCEEEEEEecCCEEEEEECCCCcE
Confidence 346688888 55665543 579999999999988877765432 2234455 455665555 578999999999999
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC----CCCEEEEEeecCCCEEEEEeCCCeE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH----SGEVCGLKWSNEGNLLASGGDDNVV 168 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i 168 (335)
+..+...... ....++ +++.++++..++.|.++|..+.+.......+. -..++.+.|. ++..++....++.|
T Consensus 99 ~~~i~~g~~~--g~glt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V 174 (266)
T 2iwa_A 99 IKNFTHQMKD--GWGLAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCI 174 (266)
T ss_dssp EEEEECCSSS--CCEEEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEECCCCC--eEEEEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeE
Confidence 9888643111 233444 66666666678999999998766544433221 1236788888 67655555567899
Q ss_pred EEEEccCCCcccceeec--------c--CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC
Q 019847 169 RIWERSKMSSSKSLHRF--------T--DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~--------~--~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 224 (335)
.+.|..++.....+..- . ......+.++|+|+++.+++++. ..+.+...++...
T Consensus 175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk--~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK--LWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET--TCSEEEEEEEEEC
T ss_pred EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC--CCCeEEEEEEecc
Confidence 99998875543333211 0 01135689999999999999986 7888998887653
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-07 Score=77.79 Aligned_cols=253 Identities=6% Similarity=-0.076 Sum_probs=157.4
Q ss_pred eeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEE-ECCCcEEEEeCCCceeEeeeccc
Q 019847 21 VIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVG-YMDSKLQLWDAETSKLVRNLEGH 99 (335)
Q Consensus 21 ~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~ 99 (335)
|.+..+..++..+....|+..+++..+...... ....+..++|++.+..|... ...+.|..+++........+...
T Consensus 81 C~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~~---~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 81 CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN---NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp EEECSSCCEEEEECBSCEEEECTTSCCCEEEEC---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred ECCccccceeEeecCccceeeccCCCcEEEEec---CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 344444556666677789999988776544332 23457899999866666555 46788999998866544433333
Q ss_pred ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC-C-CeEEEEEccCCC
Q 019847 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD-D-NVVRIWERSKMS 177 (335)
Q Consensus 100 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~ 177 (335)
......+++.+..+.++++-...+.|.+.++..... .............+++.|.+..|..+.. . +.|..+++....
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 345677888874666667767778899888864332 2333334456789999997666655543 3 678888876422
Q ss_pred cccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeeee
Q 019847 178 SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSA 256 (335)
Q Consensus 178 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 256 (335)
. ..+ ....-.....++++|++..|+.+-. ..+.|..+|+........+.. ......+++. .+....+
T Consensus 237 ~-~~~--~~~~~~~PnGlavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~t------ 304 (386)
T 3v65_B 237 R-RII--ADTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWT------ 304 (386)
T ss_dssp C-EEE--ECSSCSCEEEEEEEGGGTEEEEEET--TTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEE------
T ss_pred c-EEE--EECCCCCeeeEEEeCCCCEEEEEEC--CCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEe------
Confidence 1 111 1222345789999998888888876 778999999875433323322 2345667763 3332222
Q ss_pred ecCCCeEEEEECCCCceeecccCCCCceeEeEE
Q 019847 257 SGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQ 289 (335)
Q Consensus 257 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 289 (335)
....+.|..++..+++.+..+.........+++
T Consensus 305 d~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 305 DWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp ETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred eCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 255788888887677665555433333344443
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.4e-08 Score=85.57 Aligned_cols=265 Identities=13% Similarity=0.090 Sum_probs=159.2
Q ss_pred eeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCC--CceE-EEEcCCCCEEEEEEC------CCcEEEEeCCCcee
Q 019847 22 IDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDD--YPTS-VSWSHDAKTLAVGYM------DSKLQLWDAETSKL 92 (335)
Q Consensus 22 ~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~--~v~~-~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~ 92 (335)
+...++.+++++.++.+..+|..+++..-...+..+.. .+.+ ... .+..+++++. +|.|..+|.++|+.
T Consensus 111 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~ 188 (571)
T 2ad6_A 111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGEL 188 (571)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred cEEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcE
Confidence 34456778888889999999999999876665543211 1111 111 2345666654 78999999999998
Q ss_pred Eeeecccccc-------------------------------------e-eEeeecCCCCCEEEEeeCC------------
Q 019847 93 VRNLEGHHRR-------------------------------------V-ATSSWNHWNGHILTSGSKD------------ 122 (335)
Q Consensus 93 ~~~~~~~~~~-------------------------------------v-~~~~~~~~~~~~l~~~~~d------------ 122 (335)
+..+...... + ..+++.+ ....++.+..+
T Consensus 189 ~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd 267 (571)
T 2ad6_A 189 KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGD 267 (571)
T ss_dssp EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSC
T ss_pred EEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEECCCCccccCCccCCC
Confidence 8776532111 0 1245555 44556555532
Q ss_pred ----CcEEEEecccCCeeeEEeec-C--------CCCEEEEEeecCCC---EEEEEeCCCeEEEEEccCCCcccceeecc
Q 019847 123 ----KSIINHDVRVSNNVTSCIKA-H--------SGEVCGLKWSNEGN---LLASGGDDNVVRIWERSKMSSSKSLHRFT 186 (335)
Q Consensus 123 ----g~i~~~d~~~~~~~~~~~~~-~--------~~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 186 (335)
+.|..+|.++++..-..... | ..++. +...++|+ .++.++.+|.++++|.++++..-... +.
T Consensus 268 ~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~-~~ 345 (571)
T 2ad6_A 268 NKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK-VD 345 (571)
T ss_dssp CTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE-SS
T ss_pred ceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeec-cc
Confidence 35899999887765443222 2 12222 22234673 67788889999999987654321111 00
Q ss_pred C-----------CCCCe--------------------------eEEEecCCCCcEEEEec--------------------
Q 019847 187 D-----------HCGGV--------------------------KALAWSPHQVNVLATGG-------------------- 209 (335)
Q Consensus 187 ~-----------~~~~v--------------------------~~~~~~~~~~~~~~~~~-------------------- 209 (335)
. ...++ ..++++|+...+++...
T Consensus 346 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~ 425 (571)
T 2ad6_A 346 PAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFV 425 (571)
T ss_dssp TTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred CCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccc
Confidence 0 00011 23567777665555421
Q ss_pred -----------C---CCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceee
Q 019847 210 -----------G---REDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVG 275 (335)
Q Consensus 210 -----------g---~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~ 275 (335)
+ ..++.|..||+.+++.+.+++...++........+..++.+ +.|+.++.+|.++++.+.
T Consensus 426 g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g------~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 426 GATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYA------TLDGYLKALDNKDGKELW 499 (571)
T ss_dssp CEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEE------CTTSEEEEEETTTCCEEE
T ss_pred cccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEE------cCCCeEEEEECCCCCEEE
Confidence 0 13589999999999998888765544333333334444444 679999999999999998
Q ss_pred cccCCCCc-eeEeEEcCCCCEEE
Q 019847 276 ELQSSNSR-ILDLSQSPDGLTVA 297 (335)
Q Consensus 276 ~~~~~~~~-i~~~~~~~~~~~l~ 297 (335)
+++..... -.-+.+..+|+.++
T Consensus 500 ~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 500 NFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp EEECSSCCCSCCEEEEETTEEEE
T ss_pred EEeCCCCcEeeeEEEEECCEEEE
Confidence 87644321 12234556776444
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=7.7e-08 Score=84.66 Aligned_cols=285 Identities=9% Similarity=0.024 Sum_probs=171.0
Q ss_pred CCceEEEec-CCeEEEEEe-cCCceeeEEeecCCCC---------CceEEEEcCCCCE----EEEEECCCcEEEEeCCCc
Q 019847 26 RNNVLAVAL-GPVLFLWKW-ENGKVKKLLQVPGEDD---------YPTSVSWSHDAKT----LAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 26 ~~~~~~~~~-~~~i~vw~~-~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~----l~~~~~dg~i~iw~~~~~ 90 (335)
++.+++++. ++.|.-+|. .+++.+-.+....... ....++++|.+.. +++++.|+.+..+|.++|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456777777 789999999 8998765554432110 1123556554444 888889999999999999
Q ss_pred eeEeeeccccc----ceeE-eeecCCCCCEEEEee------CCCcEEEEecccCCeeeEEeecCCC--------------
Q 019847 91 KLVRNLEGHHR----RVAT-SSWNHWNGHILTSGS------KDKSIINHDVRVSNNVTSCIKAHSG-------------- 145 (335)
Q Consensus 91 ~~~~~~~~~~~----~v~~-~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~~~-------------- 145 (335)
+.+........ .+.+ .... ++ .+++++ .+|.|+.+|.++++.+-+.......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CEEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 98877653221 1211 1111 33 455554 3799999999988765443221110
Q ss_pred ----------------------CE-EEEEeecCCCEEEEEeCC----------------CeEEEEEccCCCcccceeecc
Q 019847 146 ----------------------EV-CGLKWSNEGNLLASGGDD----------------NVVRIWERSKMSSSKSLHRFT 186 (335)
Q Consensus 146 ----------------------~i-~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~ 186 (335)
.+ ..+++.++...+..+..+ +.|.-+|.++++..-..+. .
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~-~ 297 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK-T 297 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES-S
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeec-C
Confidence 00 134566777777777655 3788899877543222211 1
Q ss_pred CC--------CCCeeEEEec-CCCC--cEEEEecCCCCCeEEEEECCCCceEEEeecCC--------------cE-----
Q 019847 187 DH--------CGGVKALAWS-PHQV--NVLATGGGREDGCIKIWNVQKGTCIHGIDAKA--------------QI----- 236 (335)
Q Consensus 187 ~~--------~~~v~~~~~~-~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~--------------~~----- 236 (335)
.| ..++. +... .+|+ .+++.++ .+|.++++|.++|+.+...+... ++
T Consensus 298 ~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~ 374 (599)
T 1w6s_A 298 PHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD--RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEY 374 (599)
T ss_dssp TTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGG
T ss_pred CCccccccCCCccEE-EeccccCCcEEEEEEEEC--CCcEEEEEECCCCCEeecccccCCcccccccccCCCceeecccc
Confidence 12 12222 2222 4553 3555554 89999999999999887665221 11
Q ss_pred ---------------------eEEEeCCCCceeeeeee-------------------------eee--ec------CCCe
Q 019847 237 ---------------------CGLEWNRHHKEILSGHG-------------------------FSA--SG------DGNK 262 (335)
Q Consensus 237 ---------------------~~~~~~~~~~~~~~~~~-------------------------~~~--~~------~~~~ 262 (335)
..++++|+...+++... +.. .+ ..|.
T Consensus 375 ~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~ 454 (599)
T 1w6s_A 375 GTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQ 454 (599)
T ss_dssp CCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEE
T ss_pred CCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCe
Confidence 23566776665544210 001 01 4589
Q ss_pred EEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 263 LCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 263 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
+.-||+.+++.+-+.... .+...-.....+.+++.++.||.++.||..+++..-+
T Consensus 455 l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~ 509 (599)
T 1w6s_A 455 IKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWK 509 (599)
T ss_dssp EEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEE
Confidence 999999999987766422 1122112233456788899999999999998776543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=7.2e-07 Score=72.45 Aligned_cols=233 Identities=7% Similarity=-0.059 Sum_probs=145.5
Q ss_pred eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCC----ceeEeeecccccce
Q 019847 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAET----SKLVRNLEGHHRRV 103 (335)
Q Consensus 29 ~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~----~~~~~~~~~~~~~v 103 (335)
++..+....|+..++++.+...... ....+..++|++.++.|..+. .++.|..+++.. ......+...-...
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~---~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC---SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEECCCeEEEEECCCcceEehhc---CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 3455666789999998877544432 245678999999766665554 568999999875 22222232222456
Q ss_pred eEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC--CeEEEEEccCCCcccc
Q 019847 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD--NVVRIWERSKMSSSKS 181 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~ 181 (335)
..+++.+..++++++-...+.|.++++.... ..............+++.|.+..|..+... +.|...++... ..+.
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~ 157 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYS 157 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEE
Confidence 7888876456666666778899999987433 233333344567899999966666555543 68888887532 1111
Q ss_pred eeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec---CCcEeEEEeCCCCceeeeeeeeeeec
Q 019847 182 LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA---KAQICGLEWNRHHKEILSGHGFSASG 258 (335)
Q Consensus 182 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (335)
+ ....-.....++++|++..++.+.. ..+.|..+|+........... ......+++.. +....+- .
T Consensus 158 ~--~~~~~~~P~gla~d~~~~~lY~~D~--~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-~~ly~~d------~ 226 (316)
T 1ijq_A 158 L--VTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTD------I 226 (316)
T ss_dssp E--ECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEE------T
T ss_pred E--EECCCCCceEEEEeccCCEEEEEEC--CCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC-CEEEEEE------C
Confidence 1 1122345789999998888888876 678999999874333222222 23456677743 3333222 5
Q ss_pred CCCeEEEEECCCCceeecc
Q 019847 259 DGNKLCLWKYPNMTKVGEL 277 (335)
Q Consensus 259 ~~~~i~i~d~~~~~~~~~~ 277 (335)
..+.|..++..+++.+..+
T Consensus 227 ~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 227 INEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TTTEEEEEETTTCCCCEEE
T ss_pred CCCeEEEEeCCCCcceEEE
Confidence 5788988887776655444
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-06 Score=73.20 Aligned_cols=249 Identities=7% Similarity=-0.061 Sum_probs=156.2
Q ss_pred ecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCc----eeEeeecc
Q 019847 24 WGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETS----KLVRNLEG 98 (335)
Q Consensus 24 ~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~----~~~~~~~~ 98 (335)
..+..++..+....|+..+++........ .....+..++|++.+..|.... ..+.|+.+++... .....+..
T Consensus 80 ~~~~~~ll~~~~~~I~~i~l~~~~~~~~~---~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~ 156 (400)
T 3p5b_L 80 VGSIAYLFFTNRHEVRKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 156 (400)
T ss_dssp STTSCEEEEEETTEEEEECTTSCSCEEEE---CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS
T ss_pred ccccceeEEeccceeEEEccCCcceeEec---cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC
Confidence 34455677777889999999877654433 2345688999999766666554 5678999988652 22233333
Q ss_pred cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC--CCeEEEEEccCC
Q 019847 99 HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD--DNVVRIWERSKM 176 (335)
Q Consensus 99 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~ 176 (335)
.......+++.+..++++++-...+.|.+.+++.... .............|++.|.+..|..... .+.|...++...
T Consensus 157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~-~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 235 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE-EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce-EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence 3456778888774666777777788999999874432 3333334456789999997666666553 367888887642
Q ss_pred CcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec---CCcEeEEEeCCCCceeeeeee
Q 019847 177 SSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA---KAQICGLEWNRHHKEILSGHG 253 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 253 (335)
.. ..+ ....-.....|++++++..|+.+-. ..+.|..+|+........... -.....+++. +..++..
T Consensus 236 ~~-~~~--~~~~l~~P~glavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywt-- 306 (400)
T 3p5b_L 236 DI-YSL--VTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWT-- 306 (400)
T ss_dssp SC-EEE--ECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEE--
T ss_pred cc-EEE--EECCCCceEEEEEEeCCCEEEEEEC--CCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEe--
Confidence 21 111 1222346789999998888888876 678999999875443333332 1334566663 2233222
Q ss_pred eeeecCCCeEEEEECCCCceeecccCCCCceeEeE
Q 019847 254 FSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLS 288 (335)
Q Consensus 254 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 288 (335)
....+.|..+|..+++.+..+........++.
T Consensus 307 ---d~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 307 ---DIINEAIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp ---ESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred ---cCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence 24577888888777766655543333344443
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-06 Score=80.68 Aligned_cols=275 Identities=9% Similarity=0.041 Sum_probs=170.4
Q ss_pred ceeeeec-CCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec
Q 019847 19 SKVIDWG-RNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97 (335)
Q Consensus 19 ~~~~~~~-~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 97 (335)
+.++... ++.+.+++.++.+..|+.++++...... ..+...|.++...+++.+ ..|+.++-+..||..+++......
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~-~~~~~~i~~i~~d~~g~l-wigt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIP-ILGTKQIQAILQQSPTRI-WVATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC-----CCCEEEEEEEETTEE-EEEEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecC-CCCCCeeEEEEEcCCCCE-EEEECCCCeEEEeCCCCeEEEeec
Confidence 5566655 4567776666679999988776543321 123467888888877764 445544459999988766443322
Q ss_pred c-------cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee-------cCCCCEEEEEeecCCCEEEEEe
Q 019847 98 G-------HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK-------AHSGEVCGLKWSNEGNLLASGG 163 (335)
Q Consensus 98 ~-------~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~ 163 (335)
. ....|.++...+ ++.+. .|+.+ -|.+||..+.. ...... .....|.++...++|. |..|+
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~-~g~lW-igt~~-Gl~~~~~~~~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt 327 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDS-QNRLW-IGTFN-DLNIYHEGTDS-FASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGT 327 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECT-TSCEE-EEESS-CEEEEETTTTE-EEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEE
T ss_pred CCCCccccCCCeEEEEEEcC-CCCEE-EEeCC-hhheEcCCCCe-EEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEE
Confidence 1 135688888876 56544 45555 58888876443 222211 1235699999988877 55677
Q ss_pred CCCeEEEEEccCCCcccceeec----cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee--------
Q 019847 164 DDNVVRIWERSKMSSSKSLHRF----TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID-------- 231 (335)
Q Consensus 164 ~dg~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-------- 231 (335)
.++-|..|+.....- ...... .-....|.++...+++...+.+ .++-|..||..+++......
T Consensus 328 ~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt----~~~Gl~~~~~~~~~~~~~~~~~~~~~~~ 402 (795)
T 4a2l_A 328 YFGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGT----NDGGLNLYNPITQRFTSYTLQEDESARG 402 (795)
T ss_dssp SSSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEECTTSCEEEEE----SSSCEEEECTTTCCEEEECCC------C
T ss_pred CCCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEECCCCCEEEEE----CCCCeEEEcCCCCcEEEEecCCCCcccC
Confidence 777799998654221 111110 0123468999998888533332 56789999988765443221
Q ss_pred -cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc----CCCCceeEeEEcCCCCEEEEEeCCCcEE
Q 019847 232 -AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ----SSNSRILDLSQSPDGLTVATAGADETIR 306 (335)
Q Consensus 232 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 306 (335)
....|.++...+++..+..| +.++.+..||..+++...... .+...|.++...++|.+.+.. .+ -+.
T Consensus 403 l~~~~v~~i~~d~~g~~lWig------t~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~ 474 (795)
T 4a2l_A 403 IGSNNIKAVYVDEKKSLVYIG------THAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALV 474 (795)
T ss_dssp CSCSCEEEEEEETTTTEEEEE------ETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEE
T ss_pred CCCccEEEEEEcCCCCEEEEE------eCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-cee
Confidence 13468888888888734334 346789999988765432211 234568999999888766544 44 577
Q ss_pred EEecCCC
Q 019847 307 FWEAFGP 313 (335)
Q Consensus 307 iw~~~~~ 313 (335)
.|+....
T Consensus 475 ~~~~~~~ 481 (795)
T 4a2l_A 475 RFNPEQR 481 (795)
T ss_dssp EEETTTT
T ss_pred EEeCCCC
Confidence 8887653
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.8e-07 Score=73.65 Aligned_cols=240 Identities=10% Similarity=0.001 Sum_probs=150.0
Q ss_pred ceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEe
Q 019847 61 PTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI 140 (335)
Q Consensus 61 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 140 (335)
.+|.+..++ .+|+.+. ...|+..++...+....+. ....+..++|.+.++.++++-...+.|..+++..... ....
T Consensus 36 ~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~ 111 (349)
T 3v64_C 36 RSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV 111 (349)
T ss_dssp SCEEESSSC-CEEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE
T ss_pred CcccccccC-ceeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-eEEE
Confidence 455555553 3555543 4468888887655444333 3345789999985666666666788999999875442 2223
Q ss_pred ecCCCCEEEEEeecCC-CEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC-CeEEE
Q 019847 141 KAHSGEVCGLKWSNEG-NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED-GCIKI 218 (335)
Q Consensus 141 ~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d-~~i~i 218 (335)
.........+++.+.+ +++++-...+.|.+.++..... . ......-.....++++|.+..++.+.. .. +.|..
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~--~l~~~~l~~P~~iavdp~~g~ly~td~--~~~~~I~r 186 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-K--VLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPRIEA 186 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E--EEECTTCSCEEEEEEETTTTEEEEEEC--SSSCEEEE
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-E--EEEeCCCCCcceEEEecCcCeEEEecc--CCCCEEEE
Confidence 2233445788998754 4445555678899999764321 1 112223345789999998777887764 44 88999
Q ss_pred EECCCCceEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEE
Q 019847 219 WNVQKGTCIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVA 297 (335)
Q Consensus 219 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 297 (335)
+++.......... .-.....++++|++..+.... ...+.|..+|+........+.........+++. .+.+++
T Consensus 187 ~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD-----~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~ 260 (349)
T 3v64_C 187 SSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD-----AKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYW 260 (349)
T ss_dssp EETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEE
T ss_pred EeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEE-----CCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEE
Confidence 9986443322222 234578999999887776543 457899999987544333333333456778883 455555
Q ss_pred EEeCCCcEEEEecCCCCC
Q 019847 298 TAGADETIRFWEAFGPSG 315 (335)
Q Consensus 298 ~~~~dg~v~iw~~~~~~~ 315 (335)
+-...+.|..++..+++.
T Consensus 261 td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 261 TDWHTKSINSANKFTGKN 278 (349)
T ss_dssp EETTTTEEEEEETTTCCS
T ss_pred ecCCCCeEEEEEccCCCc
Confidence 555677788887544443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-07 Score=82.87 Aligned_cols=286 Identities=13% Similarity=0.051 Sum_probs=168.2
Q ss_pred cCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCc-------eEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec
Q 019847 25 GRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYP-------TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97 (335)
Q Consensus 25 ~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 97 (335)
.++.+++++.++.|.-+|..+++.+-.+......... ..+++ .+..+++++.|+.|.-+|.++|+.+....
T Consensus 67 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence 3466777776566999999999986655543221100 11222 35678888899999999999999887765
Q ss_pred cccc----cee-EeeecC--CCCC-EEEEee------CCCcEEEEecccCCeeeEEeecCCCCE----------------
Q 019847 98 GHHR----RVA-TSSWNH--WNGH-ILTSGS------KDKSIINHDVRVSNNVTSCIKAHSGEV---------------- 147 (335)
Q Consensus 98 ~~~~----~v~-~~~~~~--~~~~-~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~~~~i---------------- 147 (335)
.... .+. ...... .+++ .+++++ .++.|..+|.++++.+-..-. ....+
T Consensus 145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~-~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPF-VEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEES-STTCEEEETTEEEEESSCTTC
T ss_pred CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCC-CccccccccCccccccccccc
Confidence 3321 111 111111 0122 566655 378999999988776543211 10000
Q ss_pred -------------------------EEEEeecCCCEEEEEeC--------------------C----CeEEEEEccCCCc
Q 019847 148 -------------------------CGLKWSNEGNLLASGGD--------------------D----NVVRIWERSKMSS 178 (335)
Q Consensus 148 -------------------------~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~ 178 (335)
..+++.|+..+++.+.. | +.|.-+|.++++.
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 13456676677776663 2 5799999877543
Q ss_pred ccceeeccCCC--------CCeeEEEec-CCCC--cEEEEecCCCCCeEEEEECCCCceEEEeecCCc------------
Q 019847 179 SKSLHRFTDHC--------GGVKALAWS-PHQV--NVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQ------------ 235 (335)
Q Consensus 179 ~~~~~~~~~~~--------~~v~~~~~~-~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~------------ 235 (335)
.-..+ ...|. .++. +... .+|+ .+++.++ .+|.++++|.++|+.+..++....
T Consensus 304 ~W~~q-~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g 379 (582)
T 1flg_A 304 KWFYQ-HTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHAD--RNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTG 379 (582)
T ss_dssp EEEEE-SSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTC
T ss_pred EEEEe-CCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEEC--CCceEEEEECCCCCEecccccccCccccccccccCC
Confidence 22221 11121 2222 2221 4554 3555554 899999999999998876654320
Q ss_pred --E--------------------------------eEEEeCCCCceeeeeeee------------------e--------
Q 019847 236 --I--------------------------------CGLEWNRHHKEILSGHGF------------------S-------- 255 (335)
Q Consensus 236 --~--------------------------------~~~~~~~~~~~~~~~~~~------------------~-------- 255 (335)
+ ..++++|+...+++...- .
T Consensus 380 ~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p 459 (582)
T 1flg_A 380 RPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKR 459 (582)
T ss_dssp CEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred CEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecC
Confidence 0 123556655555432110 0
Q ss_pred -eecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 019847 256 -ASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDED 318 (335)
Q Consensus 256 -~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 318 (335)
....+|.|.-||+.+++.+-+..... ++..-.....+.+++.++.||.++.||..+++..-+
T Consensus 460 ~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~ 522 (582)
T 1flg_A 460 MYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK 522 (582)
T ss_dssp SCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEE
Confidence 01236899999999999876665332 222222223456788899999999999998876543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.1e-07 Score=80.90 Aligned_cols=268 Identities=11% Similarity=0.089 Sum_probs=157.8
Q ss_pred eeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCC--Cce-EEEEcC---CCC-EEEEEEC------CCcEEEEeCC
Q 019847 22 IDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDD--YPT-SVSWSH---DAK-TLAVGYM------DSKLQLWDAE 88 (335)
Q Consensus 22 ~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~--~v~-~~~~~~---~~~-~l~~~~~------dg~i~iw~~~ 88 (335)
+...++.+++++.++.|.-+|.++|+..-......+.. .+. ...... +++ .+++++. +|.|.-+|.+
T Consensus 113 ~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~ 192 (582)
T 1flg_A 113 AAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPD 192 (582)
T ss_dssp CEEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTT
T ss_pred cEEECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECC
Confidence 34456788888899999999999999876655543210 111 111111 233 5666543 7899999999
Q ss_pred CceeEeeecccccce-----------------------------------------eEeeecCCCCCEEEEeeC------
Q 019847 89 TSKLVRNLEGHHRRV-----------------------------------------ATSSWNHWNGHILTSGSK------ 121 (335)
Q Consensus 89 ~~~~~~~~~~~~~~v-----------------------------------------~~~~~~~~~~~~l~~~~~------ 121 (335)
+|+.+.........+ ..+++.| ...+++.+..
T Consensus 193 tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~-~~g~vyv~~gn~~~~~ 271 (582)
T 1flg_A 193 TGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDA-ETNTIIVGAGNPGPWN 271 (582)
T ss_dssp TCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEET-TTTEEEEEECCBSSSC
T ss_pred CCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcC-CCCEEEEeCCCCCccc
Confidence 999877553211000 1234555 5566665552
Q ss_pred --------------C----CcEEEEecccCCeeeEEeec-CC--------CCEEEEEee-cCCC---EEEEEeCCCeEEE
Q 019847 122 --------------D----KSIINHDVRVSNNVTSCIKA-HS--------GEVCGLKWS-NEGN---LLASGGDDNVVRI 170 (335)
Q Consensus 122 --------------d----g~i~~~d~~~~~~~~~~~~~-~~--------~~i~~~~~~-~~~~---~l~~~~~dg~i~i 170 (335)
| +.|..+|..+++..-..... |. .++. +... .+|+ .++.++.+|.+++
T Consensus 272 ~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~ 350 (582)
T 1flg_A 272 TWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYV 350 (582)
T ss_dssp GGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEE
T ss_pred CcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEE
Confidence 2 58999999988775543222 21 1222 2222 4664 7888999999999
Q ss_pred EEccCCCcccceeecc----------------------C---------CCC-----------CeeEEEecCCCCcEEEEe
Q 019847 171 WERSKMSSSKSLHRFT----------------------D---------HCG-----------GVKALAWSPHQVNVLATG 208 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~----------------------~---------~~~-----------~v~~~~~~~~~~~~~~~~ 208 (335)
+|.++++..-....-. . ... .-..++++|+...+++..
T Consensus 351 lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~ 430 (582)
T 1flg_A 351 VDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPA 430 (582)
T ss_dssp EETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEE
T ss_pred EECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEec
Confidence 9977654321111000 0 000 001345666655444432
Q ss_pred c------------------------------CCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeec
Q 019847 209 G------------------------------GREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASG 258 (335)
Q Consensus 209 ~------------------------------g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (335)
. ...+|.|..||+.+++.+-+.+...+...-.....+..++.+ +
T Consensus 431 ~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g------~ 504 (582)
T 1flg_A 431 NHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTG------T 504 (582)
T ss_dssp ECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEE------C
T ss_pred hhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEE------C
Confidence 1 013688999999999998877765443322222234444444 7
Q ss_pred CCCeEEEEECCCCceeecccCCCCce-eEeEEcCCCCEEE
Q 019847 259 DGNKLCLWKYPNMTKVGELQSSNSRI-LDLSQSPDGLTVA 297 (335)
Q Consensus 259 ~~~~i~i~d~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~ 297 (335)
.|+.++.||.++++.+.+++...+.. .-+.+..+|+..+
T Consensus 505 ~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 505 GDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 79999999999999998887644322 2356667876433
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.8e-08 Score=73.93 Aligned_cols=185 Identities=12% Similarity=0.056 Sum_probs=124.5
Q ss_pred cccceeeeecCCceEEEecC---CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEE-ECCCcEEEEeCCCce
Q 019847 16 DYYSKVIDWGRNNVLAVALG---PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVG-YMDSKLQLWDAETSK 91 (335)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~---~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~ 91 (335)
..+...+.|+++.++.++.. +.|+.+|+++++......++.+ .......+.++.|... -.++.+.+||.++.+
T Consensus 20 ~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~---~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPP---YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT---CCEEEEEEETTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC---cceeEEEEeCCEEEEEEeeCCEEEEEECCcCc
Confidence 35566788998877776643 4899999999999888776543 3333333445555554 468899999999999
Q ss_pred eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeec-CC---CCEEEEEeecCCCEEEEEeCCCe
Q 019847 92 LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA-HS---GEVCGLKWSNEGNLLASGGDDNV 167 (335)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~---~~i~~~~~~~~~~~l~~~~~dg~ 167 (335)
.+.++.... .-..+++ ++..|+.+..++.|.++|..+.+........ +. ..++.+.|. +|+.++....+..
T Consensus 97 ~~~ti~~~~-~Gwglt~---dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~ 171 (243)
T 3mbr_X 97 PRARFRYPG-EGWALTS---DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSR 171 (243)
T ss_dssp EEEEEECSS-CCCEEEE---CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTE
T ss_pred EEEEEeCCC-CceEEee---CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCe
Confidence 999987543 2345554 5666666667899999999876654333221 11 345667765 6666665556778
Q ss_pred EEEEEccCCCcccceeec--c--------CCCCCeeEEEecCCCCcEEEEe
Q 019847 168 VRIWERSKMSSSKSLHRF--T--------DHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 168 i~iwd~~~~~~~~~~~~~--~--------~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
|.+.|.+++.....+..- . ....-.+.++++|+++.++++|
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 999997775432222211 0 1123468999999999999987
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=5.3e-07 Score=79.36 Aligned_cols=260 Identities=12% Similarity=0.069 Sum_probs=152.1
Q ss_pred eEEEecCCeEEEEEecCCceeeEEeecCCCC--CceE-EEEcCCCCEEEEEE------CCCcEEEEeCCCceeEeeeccc
Q 019847 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDD--YPTS-VSWSHDAKTLAVGY------MDSKLQLWDAETSKLVRNLEGH 99 (335)
Q Consensus 29 ~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~--~v~~-~~~~~~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~ 99 (335)
+++++.++.+..+|..+|+..-...+..+.. .+.+ ..+. ++ .+++++ .+|.|+.+|.++|+.+..+...
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 8888889999999999999866555433210 1111 1111 34 566655 3799999999999988776532
Q ss_pred ccce--------------------------------------eEeeecCCCCCEEEEeeCC----------------CcE
Q 019847 100 HRRV--------------------------------------ATSSWNHWNGHILTSGSKD----------------KSI 125 (335)
Q Consensus 100 ~~~v--------------------------------------~~~~~~~~~~~~l~~~~~d----------------g~i 125 (335)
.... ..+++.+ ...+++.+..+ +.|
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccCcccCCCccccceE
Confidence 2110 1234555 56667766654 379
Q ss_pred EEEecccCCeeeEEeecCC---------CCEEEEEee-cCC---CEEEEEeCCCeEEEEEccCCCcccceeecc------
Q 019847 126 INHDVRVSNNVTSCIKAHS---------GEVCGLKWS-NEG---NLLASGGDDNVVRIWERSKMSSSKSLHRFT------ 186 (335)
Q Consensus 126 ~~~d~~~~~~~~~~~~~~~---------~~i~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------ 186 (335)
..+|.++++..-.....+. .++. +... .+| ..++.++.+|.++++|.++++..-......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~ 359 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFK 359 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccc
Confidence 9999998776544332221 1222 2222 466 467778899999999987654321111000
Q ss_pred ----CCCCCe--------------------------eEEEecCCCCcEEEEec---------------------------
Q 019847 187 ----DHCGGV--------------------------KALAWSPHQVNVLATGG--------------------------- 209 (335)
Q Consensus 187 ----~~~~~v--------------------------~~~~~~~~~~~~~~~~~--------------------------- 209 (335)
....++ ..++++|+...+++...
T Consensus 360 ~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 439 (599)
T 1w6s_A 360 SVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMY 439 (599)
T ss_dssp EECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred ccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceec
Confidence 000000 23456666543333210
Q ss_pred ---CC------CCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC
Q 019847 210 ---GR------EDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS 280 (335)
Q Consensus 210 ---g~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 280 (335)
.. .+|.+..||+.+++.+-..+...+...-.....+..++. ++.|+.++.||.++++.+.+++..
T Consensus 440 ~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~------gt~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 440 PGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFY------GTLDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp ECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE------ECTTSEEEEEETTTCCEEEEEECS
T ss_pred cCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEE------ECCCCeEEEEECCCCCEEEEeeCC
Confidence 00 247899999999998887765433221111223333333 477999999999999999887644
Q ss_pred CCce-eEeEEcCCCC-EEEE
Q 019847 281 NSRI-LDLSQSPDGL-TVAT 298 (335)
Q Consensus 281 ~~~i-~~~~~~~~~~-~l~~ 298 (335)
...+ .-+.+..+|+ |+++
T Consensus 514 ~g~~~~P~~y~~~G~qyv~~ 533 (599)
T 1w6s_A 514 SGAIGYPMTYTHKGTQYVAI 533 (599)
T ss_dssp SCCCSCCEEEEETTEEEEEE
T ss_pred CCcEeccEEEEeCCEEEEEE
Confidence 3321 2355566775 4443
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-06 Score=79.44 Aligned_cols=273 Identities=10% Similarity=0.038 Sum_probs=172.9
Q ss_pred ccceeeeecC-CceEEEecCCeEEEEEecCCceeeEEeec----CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 17 YYSKVIDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQVP----GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 17 ~~~~~~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
-.+.++..++ +.+.+++.++.|..|+..++......... -....|.++...++|+ |..|+.++-|..|+..+++
T Consensus 310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~ 388 (795)
T 4a2l_A 310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQR 388 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCC
T ss_pred CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCc
Confidence 4566777666 56777777788999998766543322111 1245689999888886 5567777779999988765
Q ss_pred eEeeecc--------cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee----cCCCCEEEEEeecCCCEE
Q 019847 92 LVRNLEG--------HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK----AHSGEVCGLKWSNEGNLL 159 (335)
Q Consensus 92 ~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l 159 (335)
....... ....|.++...+ ++++|..|+.++-+..+|..++.. ..... .....|.++...+++++.
T Consensus 389 ~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lw 466 (795)
T 4a2l_A 389 FTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQV-ENFNQRNSQLVNENVYAILPDGEGNLW 466 (795)
T ss_dssp EEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCE-EEECTTTSCCSCSCEEEEEECSSSCEE
T ss_pred EEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEECCCCCEE
Confidence 4432211 235688888876 677577788877899999875542 22111 134578999988888755
Q ss_pred EEEeCCCeEEEEEccCCCcccceeec----cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee----
Q 019847 160 ASGGDDNVVRIWERSKMSSSKSLHRF----TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID---- 231 (335)
Q Consensus 160 ~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~---- 231 (335)
+. +.+ -+.+||..+... ...... .-....|.++...+++...+.+ . +-+..||..+++. .+.
T Consensus 467 ig-t~~-Gl~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt----~-~Gl~~~~~~~~~~--~~~~~~~ 536 (795)
T 4a2l_A 467 LG-TLS-ALVRFNPEQRSF-TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG----E-EGLSVFKQEGLDI--QKASILP 536 (795)
T ss_dssp EE-ESS-CEEEEETTTTEE-EECCBCTTCCBCCCCCEEEEEECTTCCEEEEE----S-SCEEEEEEETTEE--EECCCSC
T ss_pred EE-ecC-ceeEEeCCCCeE-EEccccccccccCCceEEEEEECCCCCEEEEe----C-CceEEEeCCCCeE--EEecCCC
Confidence 54 444 588898664321 111110 1123568999999888544432 3 5688899877665 222
Q ss_pred ----cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeec--ccC-CCCceeEeEEcCCCCEEEEEeCCCc
Q 019847 232 ----AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE--LQS-SNSRILDLSQSPDGLTVATAGADET 304 (335)
Q Consensus 232 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~--~~~-~~~~i~~~~~~~~~~~l~~~~~dg~ 304 (335)
....+.++..+++|...+.. .+.+..||..+.+...- ..+ ....|.++...++|++.+++ .+ -
T Consensus 537 ~~~l~~~~i~~i~~d~~g~lWigT--------~~Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~-G 606 (795)
T 4a2l_A 537 VSNVTKLFTNCIYEASNGIIWVGT--------REGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-NR-G 606 (795)
T ss_dssp SCGGGGSCEEEEEECTTSCEEEEE--------SSCEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-TT-E
T ss_pred CCCCCCCeeEEEEECCCCCEEEEe--------CCCceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc-CC-c
Confidence 12368889999998866543 34688888776543321 111 23458889999999866655 33 4
Q ss_pred EEEEecCC
Q 019847 305 IRFWEAFG 312 (335)
Q Consensus 305 v~iw~~~~ 312 (335)
|..|+...
T Consensus 607 l~~~~~~~ 614 (795)
T 4a2l_A 607 ISCFNPET 614 (795)
T ss_dssp EEEEETTT
T ss_pred eEEEcCCC
Confidence 55666554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.2e-07 Score=74.98 Aligned_cols=240 Identities=9% Similarity=-0.005 Sum_probs=150.4
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee
Q 019847 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK 141 (335)
Q Consensus 62 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 141 (335)
.|.+..+ ..+|+.+. ...|+..++...+...... ....+..++|.+.++.++++-...+.|..+++..... .....
T Consensus 80 ~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~~ 155 (386)
T 3v65_B 80 SCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVVS 155 (386)
T ss_dssp CEEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEEC
T ss_pred eECCccc-cceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEEe
Confidence 4545444 33555543 4578889987665444443 3456789999985666666666788999999875432 23232
Q ss_pred cCCCCEEEEEeecCCC-EEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC-CeEEEE
Q 019847 142 AHSGEVCGLKWSNEGN-LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED-GCIKIW 219 (335)
Q Consensus 142 ~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d-~~i~i~ 219 (335)
........+++.+.+. ++++-...+.|.+.++..... .............++++|.+..++.+.. .. +.|..+
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~---~~l~~~~l~~P~giavdp~~g~ly~td~--~~~~~I~r~ 230 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---KVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPRIEAS 230 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC---EEEECSSCSCEEEEEEETTTTEEEEEEC--SSSCEEEEE
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce---EEeecCCCCCCcEEEEEcCCCeEEEecc--CCCCEEEEE
Confidence 2333456788887544 445555567888888764221 1112223355789999998877887764 44 789999
Q ss_pred ECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEE
Q 019847 220 NVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVAT 298 (335)
Q Consensus 220 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 298 (335)
++........... -.....++++|++..|+... ...+.|..+|+........+.........+++ ..+.++++
T Consensus 231 ~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD-----~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~t 304 (386)
T 3v65_B 231 SMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD-----AKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWT 304 (386)
T ss_dssp ETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEE-----TTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEE
T ss_pred eCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEE-----CCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEe
Confidence 9875433333322 33578899998877776543 55789999998754433333333345677888 34555566
Q ss_pred EeCCCcEEEEecCCCCCC
Q 019847 299 AGADETIRFWEAFGPSGD 316 (335)
Q Consensus 299 ~~~dg~v~iw~~~~~~~~ 316 (335)
-...+.|..++..+++..
T Consensus 305 d~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 305 DWHTKSINSANKFTGKNQ 322 (386)
T ss_dssp ETTTTEEEEEETTTCCSC
T ss_pred eCCCCeEEEEECCCCcce
Confidence 667788888885554443
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.1e-08 Score=75.78 Aligned_cols=183 Identities=11% Similarity=0.038 Sum_probs=123.4
Q ss_pred ccceeeeecCCceEEEe-cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEE-ECCCcEEEEeCCCceeEe
Q 019847 17 YYSKVIDWGRNNVLAVA-LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVG-YMDSKLQLWDAETSKLVR 94 (335)
Q Consensus 17 ~~~~~~~~~~~~~~~~~-~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~ 94 (335)
.+...+.++++.++.++ .+|.|+++|+++++..... +.. ........++++.|... -.++.+.+||.++.+.+.
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~---~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLG---NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECT---TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC---CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEE
Confidence 34567888887766554 5678999999999988777 653 23332233345555444 468899999999999999
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeec-CC---CCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA-HS---GEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~---~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
++.... .-..+++ ++..|+.+..++.|.++|..+.+........ +. ..++.+.|. +|+.++....+..|.+
T Consensus 131 ti~~~~-eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~v 205 (268)
T 3nok_A 131 TTRYSG-EGWGLCY---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLE 205 (268)
T ss_dssp EEECSS-CCCCEEE---ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEE
T ss_pred EEeCCC-ceeEEec---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEE
Confidence 987533 2345554 6677777777999999999877654333221 21 245677777 6766665556789999
Q ss_pred EEccCCCcccceeec----------cCCCCCeeEEEecCCCCcEEEEe
Q 019847 171 WERSKMSSSKSLHRF----------TDHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 171 wd~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
.|.+++.....+..- .....-.+.++++|+++.++++|
T Consensus 206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 998775433222210 01123568999999999999987
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.09 E-value=8e-08 Score=74.15 Aligned_cols=184 Identities=13% Similarity=0.134 Sum_probs=123.4
Q ss_pred ccceeeeecCCceEEEe-cCC--eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCcee
Q 019847 17 YYSKVIDWGRNNVLAVA-LGP--VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETSKL 92 (335)
Q Consensus 17 ~~~~~~~~~~~~~~~~~-~~~--~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~ 92 (335)
.+...+.|+++.++.++ .+| .|+++|+++++......+.. ........++++.|.... .++.+.+||.++.+.
T Consensus 43 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~---~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 43 AFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK---RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp CEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT---TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE
T ss_pred cccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCC---ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE
Confidence 34467888877665554 344 89999999999988777643 344433444566666655 588999999999999
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeec-CC---CCEEEEEeecCCCEEEEEeCCCeE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA-HS---GEVCGLKWSNEGNLLASGGDDNVV 168 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~---~~i~~~~~~~~~~~l~~~~~dg~i 168 (335)
+.++.... .-..++ + ++..|+.+..++.|.++|..+.+........ .. ..++.+.|. +|+..+..-.+..|
T Consensus 120 ~~ti~~~~-eG~glt--~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I 194 (262)
T 3nol_A 120 VRSFNYDG-EGWGLT--H-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKI 194 (262)
T ss_dssp EEEEECSS-CCCCEE--E-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEECCC-CceEEe--c-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeE
Confidence 99987533 223444 3 6666777666888999999877654443221 11 345667776 67666666568899
Q ss_pred EEEEccCCCcccceee--cc-------CCCCCeeEEEecCCCCcEEEEe
Q 019847 169 RIWERSKMSSSKSLHR--FT-------DHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~--~~-------~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
.+.|.+++.....+.. +. ....-.+.++++|+++.++++|
T Consensus 195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 9999776543322221 11 1123468999999999999987
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.07 E-value=3.7e-08 Score=84.83 Aligned_cols=191 Identities=12% Similarity=0.062 Sum_probs=131.5
Q ss_pred CCCEEEEee-CCCcEEEEecccCCeeeEEeecCCCCEEEEEe-e-cCCCEEEEEe------------------CCCeEEE
Q 019847 112 NGHILTSGS-KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKW-S-NEGNLLASGG------------------DDNVVRI 170 (335)
Q Consensus 112 ~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~-~-~~~~~l~~~~------------------~dg~i~i 170 (335)
++++++... .++.|.+.|+.+.+...............+++ + |+++++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 445555554 45679999998766433221223356788887 5 8999998885 2357889
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC-----------------------------------Ce
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED-----------------------------------GC 215 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d-----------------------------------~~ 215 (335)
.|..+.+ ....+.-.. ....++++|+|+++++++..++. +.
T Consensus 180 ID~~t~~---v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 180 VDADKWE---VAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EETTTTE---EEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EECCCCe---EEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 9977643 233322111 34567899999988888742111 24
Q ss_pred EEEEECCC--Cce-EEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc------------eeecccCC
Q 019847 216 IKIWNVQK--GTC-IHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT------------KVGELQSS 280 (335)
Q Consensus 216 i~i~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~------------~~~~~~~~ 280 (335)
|.+.|.++ ++. +..++......++.++|+|+++++.. ..+..|.++|+.+.+ .+.++..
T Consensus 256 V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~-----~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v- 329 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAG-----KLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL- 329 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEEC-----TTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-
T ss_pred EEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeC-----CCCCeEEEEECcccccccccccCcccceEEEcCC-
Confidence 78888887 555 66777777888999999999987653 568999999998653 2333332
Q ss_pred CCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 281 NSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 281 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
......++|+|+|...++.-.|+.|..|++..
T Consensus 330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 23478899999995455666799999999986
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.2e-06 Score=77.63 Aligned_cols=275 Identities=10% Similarity=0.002 Sum_probs=165.0
Q ss_pred cceeeeecC-CceEEEecCCeEEEEEecCCceeeEEeec-----CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 18 YSKVIDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQVP-----GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 18 ~~~~~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
.+.++...+ +.+.+++.+ .+.+||..+++........ -....|.++...++|. |..|+..+-|.++|..+++
T Consensus 212 ~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~ 289 (781)
T 3v9f_A 212 DVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQ 289 (781)
T ss_dssp SEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-
T ss_pred ceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCe
Confidence 456666655 456666655 7999998777654332111 1245689998888775 5566664568999987765
Q ss_pred eEeeec--------------ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEe---------ecCCCCEE
Q 019847 92 LVRNLE--------------GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI---------KAHSGEVC 148 (335)
Q Consensus 92 ~~~~~~--------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---------~~~~~~i~ 148 (335)
...... .....|.++...+ ++. |..|+.++-|..++.....- .... ......|.
T Consensus 290 ~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~v~ 366 (781)
T 3v9f_A 290 FLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-FNN-IWIGTWGGGINFISNAPPTF-HTWSYSPTQMNESSLSNKVVS 366 (781)
T ss_dssp --------CEEECBCSSTTSBSSSCEEEEEECS-SCC-EEEEEBSSCEEEECSSCCSC-EEEC----CCCSSCCSSSCEE
T ss_pred eeeeeccccccccCCCCCCCCCCCeEEEEEEeC-CCC-EEEEecCCeEEEeCCCCCcc-eeeccCccccccCCCCCcceE
Confidence 322111 1235688888776 554 66677777888888764332 1111 01235689
Q ss_pred EEEeecCCCEEEEEeCCCeEEEEEccCCCccccee-eccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceE
Q 019847 149 GLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLH-RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI 227 (335)
Q Consensus 149 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~ 227 (335)
++...++++ |..|+.++-|..||..+... .... ........|.++...+++. +.+.. .++-+..+|.++++..
T Consensus 367 ~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~~g~-lWigt---~~~Gl~~~~~~~~~~~ 440 (781)
T 3v9f_A 367 SVCDDGQGK-LWIGTDGGGINVFENGKRVA-IYNKENRELLSNSVLCSLKDSEGN-LWFGT---YLGNISYYNTRLKKFQ 440 (781)
T ss_dssp EEEECTTSC-EEEEEBSSCEEEEETTEEEE-ECC-----CCCSBEEEEEECTTSC-EEEEE---TTEEEEEECSSSCEEE
T ss_pred EEEEcCCCC-EEEEeCCCcEEEEECCCCeE-EEccCCCCCCCcceEEEEECCCCC-EEEEe---ccCCEEEEcCCCCcEE
Confidence 998887776 55566566688898653211 1110 0012345688998888875 44422 4677999998776543
Q ss_pred EEee---cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC-----CCceeEeEEcCCCCEEEEE
Q 019847 228 HGID---AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS-----NSRILDLSQSPDGLTVATA 299 (335)
Q Consensus 228 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~ 299 (335)
.... ....+.++...+++...+.. .+.+..||..+++........ ...|.++...++|.+.+ |
T Consensus 441 ~~~~~~~~~~~v~~i~~d~~g~lwigt--------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-g 511 (781)
T 3v9f_A 441 IIELEKNELLDVRVFYEDKNKKIWIGT--------HAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-G 511 (781)
T ss_dssp ECCSTTTCCCCEEEEEECTTSEEEEEE--------TTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-E
T ss_pred EeccCCCCCCeEEEEEECCCCCEEEEE--------CCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-E
Confidence 3221 23568888888888765543 367889998765543222111 35689999999987665 4
Q ss_pred eCCCcEEEEecCC
Q 019847 300 GADETIRFWEAFG 312 (335)
Q Consensus 300 ~~dg~v~iw~~~~ 312 (335)
+.++-+..|+...
T Consensus 512 t~~~Gl~~~~~~~ 524 (781)
T 3v9f_A 512 TFGGGVGIYTPDM 524 (781)
T ss_dssp ESSSCEEEECTTC
T ss_pred EcCCCEEEEeCCC
Confidence 4433466677654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-06 Score=66.30 Aligned_cols=204 Identities=15% Similarity=0.209 Sum_probs=138.0
Q ss_pred eecCCCCCceEEEEcCCCCEEE-EEECCCcEEEEeCCCceeEeeecc-cccceeEeeecCCCCCEEEEeeCCCcEEEEec
Q 019847 53 QVPGEDDYPTSVSWSHDAKTLA-VGYMDSKLQLWDAETSKLVRNLEG-HHRRVATSSWNHWNGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 130 (335)
.+++-...+..++|+|+++.|+ +...++.|...|.. ++.++.+.- .....-.+++.+ ++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence 4566667899999999876555 46678899999987 887777642 224567788877 7777677667788999988
Q ss_pred ccCCee--eEEee------cCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeec-------cCCCCCeeEE
Q 019847 131 RVSNNV--TSCIK------AHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF-------TDHCGGVKAL 195 (335)
Q Consensus 131 ~~~~~~--~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~v~~~ 195 (335)
.....+ ..... ........++|+|+++.|.++.+.....+|.++.......+... ..+...+..+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 755431 12111 23445689999998877777776555555555421111111111 1123457899
Q ss_pred EecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC----------CcEeEEEeCCCCceeeeeeeeeeecCCCeEEE
Q 019847 196 AWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK----------AQICGLEWNRHHKEILSGHGFSASGDGNKLCL 265 (335)
Q Consensus 196 ~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 265 (335)
+++|....+++.+. ..+.+..+|.. ++.+..+... .....+++.++|...++ ++.+.++.
T Consensus 179 ~~dp~tg~lliLS~--~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-------sE~n~~y~ 248 (255)
T 3qqz_A 179 EFNQQKNTLLVLSH--ESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-------SEPNRFYR 248 (255)
T ss_dssp EEETTTTEEEEEET--TTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-------ETTTEEEE
T ss_pred EEcCCCCeEEEEEC--CCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-------cCCceEEE
Confidence 99999888888876 88999999965 6666666543 26789999999986555 45666666
Q ss_pred EEC
Q 019847 266 WKY 268 (335)
Q Consensus 266 ~d~ 268 (335)
|.-
T Consensus 249 f~~ 251 (255)
T 3qqz_A 249 FTP 251 (255)
T ss_dssp EEC
T ss_pred EEe
Confidence 653
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.8e-07 Score=72.20 Aligned_cols=179 Identities=14% Similarity=0.188 Sum_probs=119.3
Q ss_pred ceEEEEcCCCCEEEEEECCC--cEEEEeCCCceeEeeecccccceeE--eeecCCCCCEEEEeeCCCcEEEEecccCCee
Q 019847 61 PTSVSWSHDAKTLAVGYMDS--KLQLWDAETSKLVRNLEGHHRRVAT--SSWNHWNGHILTSGSKDKSIINHDVRVSNNV 136 (335)
Q Consensus 61 v~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 136 (335)
...+.|+ ++.+..+.+.+| .|+++|+++++.+..+.... .... +... .+.+.+..-.++.+.+||..+.+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEE
Confidence 3788898 666666666665 89999999999988876433 3322 3442 4455555556889999999877764
Q ss_pred eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeecc-CC-CCCeeEEEecCCCCcEEEEecCCCCC
Q 019847 137 TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFT-DH-CGGVKALAWSPHQVNVLATGGGREDG 214 (335)
Q Consensus 137 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~~~~~~g~~d~ 214 (335)
...-.+..+ ..++++++.|+.+..++.|.++|..+......+..-. +. -..++.+.|. +| .+++..- .++
T Consensus 121 ~ti~~~~eG----~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w--~~~ 192 (262)
T 3nol_A 121 RSFNYDGEG----WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG-EIFANVW--QTN 192 (262)
T ss_dssp EEEECSSCC----CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-EEEEEET--TSS
T ss_pred EEEECCCCc----eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC-EEEEEEc--cCC
Confidence 443322221 2334667777777767889999977654433333211 11 1335567876 55 5666654 688
Q ss_pred eEEEEECCCCceEEEeecC-------------CcEeEEEeCCCCceeeee
Q 019847 215 CIKIWNVQKGTCIHGIDAK-------------AQICGLEWNRHHKEILSG 251 (335)
Q Consensus 215 ~i~i~d~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 251 (335)
.|.+.|.++++.+..+... .-.+.++++|+++.+++.
T Consensus 193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVT 242 (262)
T 3nol_A 193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVT 242 (262)
T ss_dssp EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEE
T ss_pred eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEE
Confidence 9999999999999888752 245889999987766543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-06 Score=70.01 Aligned_cols=238 Identities=8% Similarity=-0.040 Sum_probs=146.8
Q ss_pred CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEE-ECCCcEEEEeCCCceeE-eeeccccccee
Q 019847 27 NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVG-YMDSKLQLWDAETSKLV-RNLEGHHRRVA 104 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~-~~~~~~~~~v~ 104 (335)
..++..+....|+..+++...........+ ...+..++|.+.+..|... ...+.|..+++..+... ..+...-....
T Consensus 4 ~p~ll~~~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~ 82 (318)
T 3sov_A 4 APLLLYANRRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD 82 (318)
T ss_dssp CCEEEEECEEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC
T ss_pred ccEEEEEccCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc
Confidence 345556667889999998764211111111 2346789999865555544 46778999998765321 12222224566
Q ss_pred EeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC--CCeEEEEEccCCCcccce
Q 019847 105 TSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD--DNVVRIWERSKMSSSKSL 182 (335)
Q Consensus 105 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~ 182 (335)
.+++.+..++++++-...+.|.++++..... .............+++.|.+..|..+.. .+.|...++.... ...+
T Consensus 83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~ 160 (318)
T 3sov_A 83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFII 160 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEE
T ss_pred EEEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEE
Confidence 7888764666777767778999999874332 2223344456789999997666666553 5788888876321 1111
Q ss_pred eeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCC
Q 019847 183 HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGN 261 (335)
Q Consensus 183 ~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (335)
....-.....++++|++..++.+-+ ..+.|..+|+.......... .......+++..+ .++. +-...+
T Consensus 161 --~~~~l~~Pnglavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~--~lyw-----td~~~~ 229 (318)
T 3sov_A 161 --INSEIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYW-----TDWSTH 229 (318)
T ss_dssp --ECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT--EEEE-----EETTTT
T ss_pred --EECCCCCccEEEEeccCCEEEEEEC--CCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC--EEEE-----EecCCC
Confidence 1122345689999998888888876 78899999987433322222 2234566666433 2222 125578
Q ss_pred eEEEEECCCCceeeccc
Q 019847 262 KLCLWKYPNMTKVGELQ 278 (335)
Q Consensus 262 ~i~i~d~~~~~~~~~~~ 278 (335)
.|..++..+++....+.
T Consensus 230 ~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 230 SILACNKYTGEGLREIH 246 (318)
T ss_dssp EEEEEETTTCCSCEEEE
T ss_pred eEEEEECCCCCceEEEe
Confidence 89999987776655443
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.4e-07 Score=72.79 Aligned_cols=177 Identities=11% Similarity=0.062 Sum_probs=119.1
Q ss_pred ceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeE--eeecCCCCCEEEEeeCCCcEEEEecccCCeeeE
Q 019847 61 PTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVAT--SSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS 138 (335)
Q Consensus 61 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 138 (335)
...+.|+ ++.+..+.+.+|.|+++|+++++.+..+ .. ..... +... .+.+.+..-.++.+.+||..+.+.+..
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 4688887 3555566677889999999999988887 22 33322 4443 456666666789999999987665444
Q ss_pred EeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccC--CCCCeeEEEecCCCCcEEEEecCCCCCeE
Q 019847 139 CIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTD--HCGGVKALAWSPHQVNVLATGGGREDGCI 216 (335)
Q Consensus 139 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~g~~d~~i 216 (335)
+.. ...-..++ ++++.|+.+..++.|.++|..+.+....+..-.. .-..++.+.|. +| .+++..- .++.|
T Consensus 132 -i~~-~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw--~s~~I 203 (268)
T 3nok_A 132 -TRY-SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYANIW--HSSDV 203 (268)
T ss_dssp -EEC-SSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEET--TCSEE
T ss_pred -EeC-CCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEEC--CCCeE
Confidence 332 22223343 5677888877789999999776544333322111 11235677877 55 5666654 68899
Q ss_pred EEEECCCCceEEEeecC--------------CcEeEEEeCCCCceeee
Q 019847 217 KIWNVQKGTCIHGIDAK--------------AQICGLEWNRHHKEILS 250 (335)
Q Consensus 217 ~i~d~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 250 (335)
.+.|.++++.+..+... .-.+.++++|+++.+++
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfV 251 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFM 251 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEE
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEE
Confidence 99999999999888642 24688999998665544
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=5.9e-06 Score=67.05 Aligned_cols=232 Identities=12% Similarity=0.024 Sum_probs=143.5
Q ss_pred EEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccC---CeeeEEeecCCCCEE
Q 019847 72 TLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVS---NNVTSCIKAHSGEVC 148 (335)
Q Consensus 72 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~~i~ 148 (335)
+|+.+. ...|+..|+.+.+....+. ....+..++|.+.++.++++-..++.|..+++... ...............
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 455554 3469999998876555444 34567899999845566666667789999998751 222222222224457
Q ss_pred EEEeecCCC-EEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceE
Q 019847 149 GLKWSNEGN-LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI 227 (335)
Q Consensus 149 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~ 227 (335)
.+++.+.+. ++++-...+.|.+.++..... ..+ ..........++++|.+..++.+..+ ..+.|...++.. ...
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~--~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG-~~~ 155 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTL--FRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG-VDI 155 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEE--EECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS-CCE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCce-EEE--EECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCC-CCe
Confidence 889987444 445556678999999764221 111 12233467899999977777777641 237898888763 333
Q ss_pred EEee--cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc--CCCCceeEeEEcCCCCEEEEEeCCC
Q 019847 228 HGID--AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ--SSNSRILDLSQSPDGLTVATAGADE 303 (335)
Q Consensus 228 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg 303 (335)
..+. .-.....+++++++..++... ...+.|..+|+.......... ........+++. .+.++++-...+
T Consensus 156 ~~~~~~~~~~P~gla~d~~~~~lY~~D-----~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~ 229 (316)
T 1ijq_A 156 YSLVTENIQWPNGITLDLLSGRLYWVD-----SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (316)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred EEEEECCCCCceEEEEeccCCEEEEEE-----CCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence 3332 234578999999887776543 457899999987533221111 122345677875 355556666778
Q ss_pred cEEEEecCCCCCC
Q 019847 304 TIRFWEAFGPSGD 316 (335)
Q Consensus 304 ~v~iw~~~~~~~~ 316 (335)
.|..++..+++..
T Consensus 230 ~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 230 AIFSANRLTGSDV 242 (316)
T ss_dssp EEEEEETTTCCCC
T ss_pred eEEEEeCCCCcce
Confidence 8888887655443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.8e-06 Score=69.25 Aligned_cols=239 Identities=8% Similarity=0.008 Sum_probs=136.8
Q ss_pred ceeeeecCC-c-eEEEecCCeEEEEEecCCceeeEEeecC-----------------CCCCceEEEEcCCCCEEEEEECC
Q 019847 19 SKVIDWGRN-N-VLAVALGPVLFLWKWENGKVKKLLQVPG-----------------EDDYPTSVSWSHDAKTLAVGYMD 79 (335)
Q Consensus 19 ~~~~~~~~~-~-~~~~~~~~~i~vw~~~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~l~~~~~d 79 (335)
...++|+++ . +++...++.|..|+..+++......... ....+..+++.++...|+++...
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 455778763 4 6666678899999987766433221100 01347899999833345556555
Q ss_pred CcEEEEeCCCceeEeeec---c-cccceeEeeecCCCCCEEEEeeC-----------------CCcEEEEecccCCeeeE
Q 019847 80 SKLQLWDAETSKLVRNLE---G-HHRRVATSSWNHWNGHILTSGSK-----------------DKSIINHDVRVSNNVTS 138 (335)
Q Consensus 80 g~i~iw~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~l~~~~~-----------------dg~i~~~d~~~~~~~~~ 138 (335)
+.|..+|..+++...... + .......+++.+.++++.++-.. ++.|..+|..++.. ..
T Consensus 101 ~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-~~ 179 (322)
T 2fp8_A 101 YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET-TL 179 (322)
T ss_dssp TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE-EE
T ss_pred CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE-EE
Confidence 568889877654322111 1 11246678887634555555322 36788888754432 21
Q ss_pred EeecCCCCEEEEEeecCCCEEEEE-eCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC-------
Q 019847 139 CIKAHSGEVCGLKWSNEGNLLASG-GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG------- 210 (335)
Q Consensus 139 ~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g------- 210 (335)
... .......++++|+++.|..+ ...+.|..|++...... ....+....+ ...+++.++|. ++++..+
T Consensus 180 ~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~-~~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 180 LLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG-TAEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMH 255 (322)
T ss_dssp EEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT-CEEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTT
T ss_pred ecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC-ccceEEeCCC-CCCeEECCCCC-EEEEecCccccccc
Confidence 111 12334678999999866655 45689999998743211 1111111223 77899999996 5444321
Q ss_pred -CCCCeEEEEECCCCceEEEeecC-----CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC
Q 019847 211 -REDGCIKIWNVQKGTCIHGIDAK-----AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 211 -~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
...+.|..+|. .++.+..+... ..+..+++ .++...++. ..++.|..+++..
T Consensus 256 ~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~------~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 256 GRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGT------LFHGSVGILVYDK 313 (322)
T ss_dssp SCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEEC------SSCSEEEEEEC--
T ss_pred CCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEee------cCCCceEEEeccc
Confidence 01467888886 47777666543 23555555 344433332 4577888888653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-06 Score=66.33 Aligned_cols=191 Identities=12% Similarity=0.107 Sum_probs=121.7
Q ss_pred eeEeeeccccc--ceeEeeecCCCCCEEEEeeCCC--cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC
Q 019847 91 KLVRNLEGHHR--RVATSSWNHWNGHILTSGSKDK--SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN 166 (335)
Q Consensus 91 ~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 166 (335)
+.+.++ .|.. -...+.|++ +.++.+.+.+| .|+.+|+.+++............--.++.. .+++....-.++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCC
Confidence 445555 3543 355788874 56666666654 899999998776444322222112334443 234445555789
Q ss_pred eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC------CcEeEEE
Q 019847 167 VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK------AQICGLE 240 (335)
Q Consensus 167 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~------~~~~~~~ 240 (335)
.+.+||.++.+ .+.++.... .-..++ +++..++++-+ ++.|.++|..+.+.+..++.. ..++.+.
T Consensus 86 ~v~v~D~~tl~---~~~ti~~~~-~Gwglt--~dg~~L~vSdg---s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 86 EGFVYDLATLT---PRARFRYPG-EGWALT--SDDSHLYMSDG---TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp EEEEEETTTTE---EEEEEECSS-CCCEEE--ECSSCEEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEEEEECCcCc---EEEEEeCCC-CceEEe--eCCCEEEEECC---CCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence 99999977643 444444322 223444 56777888763 788999999999998888653 2455666
Q ss_pred eCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC-------------CCceeEeEEcCCCCEEEEEeC
Q 019847 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS-------------NSRILDLSQSPDGLTVATAGA 301 (335)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~~ 301 (335)
+. +|+..+.. ..+..|.+.|..+++.+..+... ..-.+.|+++|+++.|+..+.
T Consensus 157 ~~-~G~lyanv------w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 157 WV-NGELLANV------WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EE-TTEEEEEE------TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred Ee-CCEEEEEE------CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 65 55433322 45789999999999987765411 124689999998766666654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-06 Score=68.83 Aligned_cols=234 Identities=16% Similarity=0.091 Sum_probs=144.4
Q ss_pred EEEEEECCCcEEEEeCCCce-eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEE
Q 019847 72 TLAVGYMDSKLQLWDAETSK-LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGL 150 (335)
Q Consensus 72 ~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~ 150 (335)
+|+.+. ...|+..++.... ..............++|.+.++.++++-...+.|..+++...................+
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 444443 4579999988653 11112222345778999985566777767788999999875532222222233456678
Q ss_pred EeecC-CCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEE
Q 019847 151 KWSNE-GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHG 229 (335)
Q Consensus 151 ~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~ 229 (335)
++.+. ++++++-...+.|.++++.... ...+ ..........+++.|.+..++.+..+ ..+.|...++........
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l--~~~~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~~~~~~ 160 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVL--FWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFII 160 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCS-CEEE--ECSSCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEETTSCSCEEE
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCc-EEEE--EeCCCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEcCCCCeEEE
Confidence 88874 4455555567889999976422 1111 12334557899999977677776521 357899998764332222
Q ss_pred ee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEE
Q 019847 230 ID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308 (335)
Q Consensus 230 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw 308 (335)
.. .-.....++++|++..++... ...+.|..+|+..................+++..+ .++.+-...+.|..+
T Consensus 161 ~~~~l~~Pnglavd~~~~~lY~aD-----~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 161 INSEIYWPNGLTLDYEEQKLYWAD-----AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILAC 234 (318)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT-EEEEEETTTTEEEEE
T ss_pred EECCCCCccEEEEeccCCEEEEEE-----CCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC-EEEEEecCCCeEEEE
Confidence 22 224578999999877776543 56789999998754332222323344667777543 455555567888888
Q ss_pred ecCCCCCC
Q 019847 309 EAFGPSGD 316 (335)
Q Consensus 309 ~~~~~~~~ 316 (335)
+..+++..
T Consensus 235 ~~~~G~~~ 242 (318)
T 3sov_A 235 NKYTGEGL 242 (318)
T ss_dssp ETTTCCSC
T ss_pred ECCCCCce
Confidence 88665543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-05 Score=70.82 Aligned_cols=232 Identities=8% Similarity=-0.070 Sum_probs=148.8
Q ss_pred CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCceeEeeecccccceeE
Q 019847 27 NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETSKLVRNLEGHHRRVAT 105 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 105 (335)
..++..+..+.|+..++++.+......+.+ -..+..++|++.+..|..+. .++.|..+++........+.........
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLETNNNNVAIPLTG-VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEG 84 (628)
T ss_dssp CCEEEEEETTEEEEEESSCTTCEEECCCCS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred CcEEEEEeCCcEEEEECCCCCcceEEEcCC-CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcce
Confidence 445666788899999998766544433333 34578999999776666554 5788999998755433333333345677
Q ss_pred eeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC--CCeEEEEEccCCCccccee
Q 019847 106 SSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD--DNVVRIWERSKMSSSKSLH 183 (335)
Q Consensus 106 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~ 183 (335)
+++.+..+++.++-...+.|.+.++..... .......-.....+++.|....|..... .+.|...++.... ...+
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l- 161 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTL- 161 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEE-
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEE-
Confidence 888764566777767778999999874432 2222234456789999996556665553 4678888776432 1222
Q ss_pred eccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeE
Q 019847 184 RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKL 263 (335)
Q Consensus 184 ~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (335)
...-.....+++++++..|+.+-. ..+.|..+|+.................+++.. + .++.. -...+.|
T Consensus 162 --~~~~~~P~GlalD~~~~~LY~aD~--~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~-~ly~t-----D~~~~~I 230 (628)
T 4a0p_A 162 --VPNVGRANGLTIDYAKRRLYWTDL--DTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-D-YIYWT-----DWSRRSI 230 (628)
T ss_dssp --ECSCSSEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECCSCEEEEEEET-T-EEEEE-----ETTTTEE
T ss_pred --ECCCCCcceEEEccccCEEEEEEC--CCCEEEEEcCCCCceEEeeccCCCceEEEEEC-C-EEEEe-----cCCCCEE
Confidence 223456789999998888888876 78899999987644322122233455677654 2 33222 2456778
Q ss_pred EEEECCCCce
Q 019847 264 CLWKYPNMTK 273 (335)
Q Consensus 264 ~i~d~~~~~~ 273 (335)
...|..+++.
T Consensus 231 ~~~dk~tg~~ 240 (628)
T 4a0p_A 231 ERANKTSGQN 240 (628)
T ss_dssp EEEETTTCCS
T ss_pred EEEECCCCCc
Confidence 8888655543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-05 Score=67.57 Aligned_cols=234 Identities=11% Similarity=0.011 Sum_probs=147.1
Q ss_pred EEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC---eeeEEeecCCCCEE
Q 019847 72 TLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN---NVTSCIKAHSGEVC 148 (335)
Q Consensus 72 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~i~ 148 (335)
+|+.+. ...|+..++........+. ....+..++|.+.++.++++-...+.|+.+++.... ..............
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 555554 4689999988765444443 456788999998556666666677889999886421 12233333445678
Q ss_pred EEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceE
Q 019847 149 GLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI 227 (335)
Q Consensus 149 ~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~ 227 (335)
.+++.+ .++++++-...+.|.+.+++.... ...+...-.....++++|.+..++.+..+ ..+.|...++......
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~---~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKR---KTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIY 238 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSE---EEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETTSCSCE
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCce---EEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCCCCccE
Confidence 899998 455555555678899998764321 11122233457899999987777777531 3478999998754433
Q ss_pred EEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccC--CCCceeEeEEcCCCCEEEEEeCCCc
Q 019847 228 HGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS--SNSRILDLSQSPDGLTVATAGADET 304 (335)
Q Consensus 228 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~ 304 (335)
..+.. -.....+++++++..|+... ...+.|..+|+........... .......+++. .+.++.+-...+.
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD-----~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~ 312 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVD-----SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA 312 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCS
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEE-----CCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCe
Confidence 33332 25678999999888776553 5578999999865443222221 22345577773 3445556666788
Q ss_pred EEEEecCCCCCCC
Q 019847 305 IRFWEAFGPSGDE 317 (335)
Q Consensus 305 v~iw~~~~~~~~~ 317 (335)
|..++..+++...
T Consensus 313 V~~~~~~~G~~~~ 325 (400)
T 3p5b_L 313 IFSANRLTGSDVN 325 (400)
T ss_dssp EEEEESSSCCCCE
T ss_pred EEEEEcCCCCceE
Confidence 8888866655443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-05 Score=72.67 Aligned_cols=239 Identities=6% Similarity=-0.062 Sum_probs=147.9
Q ss_pred eecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEE-ECCCcEEEEeCCCc----eeEeeec
Q 019847 23 DWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVG-YMDSKLQLWDAETS----KLVRNLE 97 (335)
Q Consensus 23 ~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~----~~~~~~~ 97 (335)
+.....++..+....|+..++...+...+. .....+..++|.+....|+.. ...+.|+.+++... .....+.
T Consensus 391 ~~~~~p~Ll~an~~~Ir~i~l~~~~~~~l~---~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~ 467 (791)
T 3m0c_C 391 AVGSIAYLFFTNRHEVRKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 467 (791)
T ss_dssp ETTSCCEEEEECBSSEEEECTTSCCCEEEE---CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred ecccccccccccccceeEeeccCCcceeee---cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe
Confidence 333444566666778888888776654333 234567899999866655554 45678998988753 2223333
Q ss_pred ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC-C-CeEEEEEccC
Q 019847 98 GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD-D-NVVRIWERSK 175 (335)
Q Consensus 98 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~ 175 (335)
........|++.+..++++++-...+.|.+.++.... ..............|++.|.+..|+.+.. . +.|...++..
T Consensus 468 ~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG 546 (791)
T 3m0c_C 468 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 546 (791)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence 3345667788887455677777778899999987443 23333344556899999997666666553 2 6788888764
Q ss_pred CCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC---CcEeEEEeCCCCceeeeee
Q 019847 176 MSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK---AQICGLEWNRHHKEILSGH 252 (335)
Q Consensus 176 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 252 (335)
... .......-.....|++++.+..|+.+-. ..+.|..+++........+... .....+++.. ..|+..
T Consensus 547 ~~~---~~lv~~~l~~P~GLavD~~~~~LYwaD~--~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~--~~lYwt- 618 (791)
T 3m0c_C 547 VDI---YSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWT- 618 (791)
T ss_dssp CCE---EEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEE-
T ss_pred Cce---EEEEeCCCCCceEEEEecCCCeEEEEeC--CCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC--CEEEEE-
Confidence 221 1112223356789999988888888865 6789999998755444333321 2344565533 334332
Q ss_pred eeeeecCCCeEEEEECCCCceeecc
Q 019847 253 GFSASGDGNKLCLWKYPNMTKVGEL 277 (335)
Q Consensus 253 ~~~~~~~~~~i~i~d~~~~~~~~~~ 277 (335)
-...+.|...+..+++.+..+
T Consensus 619 ----D~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 619 ----DIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp ----ETTTTEEEEEETTTCCCCEEE
T ss_pred ----ECCCCEEEEEeCCCCcceEEe
Confidence 245677888876666544433
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.8e-06 Score=78.64 Aligned_cols=197 Identities=9% Similarity=0.023 Sum_probs=112.9
Q ss_pred CceEEEEc-CCCCEEEEEEC-CC----cEEEEeCCCc-eeEeeecccccceeEeeecCCCCCEEEEeeCC-----CcEEE
Q 019847 60 YPTSVSWS-HDAKTLAVGYM-DS----KLQLWDAETS-KLVRNLEGHHRRVATSSWNHWNGHILTSGSKD-----KSIIN 127 (335)
Q Consensus 60 ~v~~~~~~-~~~~~l~~~~~-dg----~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~ 127 (335)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+... -......+.|+| +++.|+....+ ..|+.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~--~~~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK--VSGTNGEIVWGP-DHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC--EEEECSCCEECS-STTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc--ccCceeeEEEec-CCCEEEEEEECCCCCCCEEEE
Confidence 57789999 99999987653 23 4999999998 633210 112345789999 77766666554 35778
Q ss_pred EecccCCee-eEEee-cCCCCEEEEEeecCCCEEEEEeC---CCeEEEEEccCCCcccc-eeec-cCCCCCeeEEEecCC
Q 019847 128 HDVRVSNNV-TSCIK-AHSGEVCGLKWSNEGNLLASGGD---DNVVRIWERSKMSSSKS-LHRF-TDHCGGVKALAWSPH 200 (335)
Q Consensus 128 ~d~~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~-~~~~-~~~~~~v~~~~~~~~ 200 (335)
+++.++... ...+. ........+.|+|||++|+..+. ...|+++|+..+.. .. +..+ .........+.|+.
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~-~~~~~~l~~~~~~~~~s~~~~~- 329 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA-HNTLEIVRPREKGVRYDVQMHG- 329 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT-CCCEEESSCCCTTCCEEEEEET-
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC-CceeEEeecCCCCceEEEeeee-
Confidence 888654321 12222 23345678899999999887663 34688888876421 11 0222 22344555666554
Q ss_pred CCcEEEEecC--CCCCeEEEEECCCC-ceEE-EeecCC--cEeEEEeCCCCceeeeeeeeeeecCCC--eEEEEEC
Q 019847 201 QVNVLATGGG--REDGCIKIWNVQKG-TCIH-GIDAKA--QICGLEWNRHHKEILSGHGFSASGDGN--KLCLWKY 268 (335)
Q Consensus 201 ~~~~~~~~~g--~~d~~i~i~d~~~~-~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~ 268 (335)
+..++..... .....|..+|+.++ +... .+.... .+..+.+. +..++... ..++ .+.++++
T Consensus 330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~-----~~~g~~~l~~~dl 398 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAG-----RRAGLTRIWTMMA 398 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEE-----EETTEEEEEEEEC
T ss_pred CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEE-----EeCCEEEEEEEec
Confidence 4455555431 12347778887653 2222 233332 34455554 44444321 3355 4566675
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.7e-07 Score=81.99 Aligned_cols=262 Identities=12% Similarity=0.022 Sum_probs=143.9
Q ss_pred eEEEEEecCCceeeEEeecC-CCCCceEEEEcCCCCEEEEEEC-CCcEEEEeCCCceeEeeecccc-cceeEeeecCCCC
Q 019847 37 VLFLWKWENGKVKKLLQVPG-EDDYPTSVSWSHDAKTLAVGYM-DSKLQLWDAETSKLVRNLEGHH-RRVATSSWNHWNG 113 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~ 113 (335)
.+.+||..+++......++. +.....++++.++++.+++|+. +..+.+||..+.+....-.... ..-.++...+ ++
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg 298 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DG 298 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TS
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CC
Confidence 68899999888765544432 3333456788899999999984 5589999998775443322111 1223344555 78
Q ss_pred CEEEEee-CC-----CcEEEEecccCCeeeEEe---ecCCCCEEEEEeecCCCEEEEEeCCC---------eEEEEEccC
Q 019847 114 HILTSGS-KD-----KSIINHDVRVSNNVTSCI---KAHSGEVCGLKWSNEGNLLASGGDDN---------VVRIWERSK 175 (335)
Q Consensus 114 ~~l~~~~-~d-----g~i~~~d~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg---------~i~iwd~~~ 175 (335)
++++.|+ .+ ..+.+||..+........ ......-....+..+++.++.++.+| .+..||...
T Consensus 299 ~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~ 378 (656)
T 1k3i_A 299 RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG 378 (656)
T ss_dssp CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST
T ss_pred eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCC
Confidence 8999988 44 468999987654211100 00000000011223555556665444 567788765
Q ss_pred CCcccceeeccC------CCCCeeEEEecCCCCcEEEEecCCCCC-----------eEEEEECCCCceEEEe--ec--CC
Q 019847 176 MSSSKSLHRFTD------HCGGVKALAWSPHQVNVLATGGGREDG-----------CIKIWNVQKGTCIHGI--DA--KA 234 (335)
Q Consensus 176 ~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~g~~d~-----------~i~i~d~~~~~~~~~~--~~--~~ 234 (335)
............ ....-.++.+...+..+++.|+ .++ .+.+||..+.+-.... .. ..
T Consensus 379 ~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG--~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R 456 (656)
T 1k3i_A 379 SGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGG--SPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFAR 456 (656)
T ss_dssp TCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECC--BSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCC
T ss_pred cceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeC--CCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCc
Confidence 432221111110 0112244555444456787775 321 6888888876654432 11 22
Q ss_pred cEeEEEeCCCCceeeeeeeeee-----ecCCCeEEEEECCCCcee--ecccCCCCceeEeEEcCCCCEEEEEeC
Q 019847 235 QICGLEWNRHHKEILSGHGFSA-----SGDGNKLCLWKYPNMTKV--GELQSSNSRILDLSQSPDGLTVATAGA 301 (335)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~ 301 (335)
.-.++...|+++.++.|..-.. ...-..+.+||..+.+-. ..+...........+.|++++++.|+.
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 2345566788988887731000 011256899998765432 222222222234556799999999985
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.93 E-value=8e-06 Score=74.99 Aligned_cols=275 Identities=10% Similarity=0.016 Sum_probs=168.2
Q ss_pred ccceeeeecC-CceEEEecCCeEEEEEecCCceeeEEe-------e-----cCCCCCceEEEEcCCCCEEEEEECCCcEE
Q 019847 17 YYSKVIDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQ-------V-----PGEDDYPTSVSWSHDAKTLAVGYMDSKLQ 83 (335)
Q Consensus 17 ~~~~~~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~-------~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (335)
..+.++...+ +.+.+++..+.|.+++..+++...... . .-....|.++...++|. |-.|+.++-|.
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~ 336 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGIN 336 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEE
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEE
Confidence 4566777655 466666665789999988766433221 1 01245789999988886 66677677799
Q ss_pred EEeCCCceeEeeec---------ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEe---ecCCCCEEEEE
Q 019847 84 LWDAETSKLVRNLE---------GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI---KAHSGEVCGLK 151 (335)
Q Consensus 84 iw~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~~i~~~~ 151 (335)
.++..+........ .....|.++...+ ++. |..|+.++-+..||..+... .... ......|.++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~v~~i~ 413 (781)
T 3v9f_A 337 FISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-QGK-LWIGTDGGGINVFENGKRVA-IYNKENRELLSNSVLCSL 413 (781)
T ss_dssp EECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-TSC-EEEEEBSSCEEEEETTEEEE-ECC-----CCCSBEEEEE
T ss_pred EeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-CCC-EEEEeCCCcEEEEECCCCeE-EEccCCCCCCCcceEEEE
Confidence 99887654322110 1234688888765 444 55677667788888764321 1110 12346788998
Q ss_pred eecCCCEEEEEeCCCeEEEEEccCCCcccceeecc---CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEE
Q 019847 152 WSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFT---DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIH 228 (335)
Q Consensus 152 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~ 228 (335)
..+++++. .|+.++-+..+|.++.. +..+. .....|.++...+++. +.+.. . +-+..+|..+++...
T Consensus 414 ~d~~g~lW-igt~~~Gl~~~~~~~~~----~~~~~~~~~~~~~v~~i~~d~~g~-lwigt---~-~Gl~~~~~~~~~~~~ 483 (781)
T 3v9f_A 414 KDSEGNLW-FGTYLGNISYYNTRLKK----FQIIELEKNELLDVRVFYEDKNKK-IWIGT---H-AGVFVIDLASKKVIH 483 (781)
T ss_dssp ECTTSCEE-EEETTEEEEEECSSSCE----EEECCSTTTCCCCEEEEEECTTSE-EEEEE---T-TEEEEEESSSSSCCE
T ss_pred ECCCCCEE-EEeccCCEEEEcCCCCc----EEEeccCCCCCCeEEEEEECCCCC-EEEEE---C-CceEEEeCCCCeEEe
Confidence 88777644 46766778889865421 22221 2346789998888875 44332 3 568999988765543
Q ss_pred Eeec------CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc---CCCCceeEeEEcCCCCEEEEE
Q 019847 229 GIDA------KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ---SSNSRILDLSQSPDGLTVATA 299 (335)
Q Consensus 229 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~ 299 (335)
.... ...+.++...++|...+.. .++.+..||..+.+...-.. -....|.++...++|.+.++.
T Consensus 484 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt-------~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T 556 (781)
T 3v9f_A 484 HYDTSNSQLLENFVRSIAQDSEGRFWIGT-------FGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT 556 (781)
T ss_dssp EECTTTSSCSCSCEEEEEECTTCCEEEEE-------SSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE
T ss_pred cccCcccccccceeEEEEEcCCCCEEEEE-------cCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE
Confidence 3222 2468889999988866543 23557778876654322111 123468899999998766544
Q ss_pred eCCCcEEEEecCCC
Q 019847 300 GADETIRFWEAFGP 313 (335)
Q Consensus 300 ~~dg~v~iw~~~~~ 313 (335)
.+|.+..||....
T Consensus 557 -~~Glv~~~d~~~~ 569 (781)
T 3v9f_A 557 -GEGLVCFPSARNF 569 (781)
T ss_dssp -TTEEEEESCTTTC
T ss_pred -CCCceEEECCCCC
Confidence 4666577776654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.91 E-value=3e-06 Score=71.84 Aligned_cols=152 Identities=12% Similarity=0.134 Sum_probs=96.1
Q ss_pred cceeeeecC---CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC-CC----cEEEEeCCC
Q 019847 18 YSKVIDWGR---NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM-DS----KLQLWDAET 89 (335)
Q Consensus 18 ~~~~~~~~~---~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~iw~~~~ 89 (335)
....+++++ +.++++...+.|+.+|.++++...... .......++|++++++|+++.. ++ .+.+++. .
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS---GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-E 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC---CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec---CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-C
Confidence 345677774 456666555889999988776544332 3456889999999996766654 22 2333443 2
Q ss_pred ceeE--eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee-cCCCCEEEEEeecCCCEEEEE-eCC
Q 019847 90 SKLV--RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK-AHSGEVCGLKWSNEGNLLASG-GDD 165 (335)
Q Consensus 90 ~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~-~~d 165 (335)
+... ..+. .......+++.|.++.++++-..++.|..++...... ..... ........++|+|++++|..+ ...
T Consensus 214 g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~-~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 214 SGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET-TPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp GTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE-EEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred Cceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence 3221 2222 2234677888885667777766788999999874432 12211 122346789999999955444 567
Q ss_pred CeEEEEEccC
Q 019847 166 NVVRIWERSK 175 (335)
Q Consensus 166 g~i~iwd~~~ 175 (335)
+.|..++...
T Consensus 292 ~~I~~~~~d~ 301 (430)
T 3tc9_A 292 HYILRSDYDW 301 (430)
T ss_dssp TEEEEEEEET
T ss_pred CEEEEEeCCc
Confidence 8899988663
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.1e-06 Score=71.05 Aligned_cols=238 Identities=9% Similarity=-0.000 Sum_probs=138.2
Q ss_pred CceEEEEcC-CCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeC-CC----cEEEEecccC
Q 019847 60 YPTSVSWSH-DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK-DK----SIINHDVRVS 133 (335)
Q Consensus 60 ~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg----~i~~~d~~~~ 133 (335)
....++++| ++..|.++...+.|+.+|+++++...... .......++|++ +++.|+.+.. ++ .+..++....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTRESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeCCCc
Confidence 467899998 46667766655889999998766544333 456688999999 8885555543 22 3444443322
Q ss_pred CeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCC
Q 019847 134 NNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE 212 (335)
Q Consensus 134 ~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 212 (335)
......+.. ......++++| ++.++++-..++.|..++...... ..+.... .......++|+|++.+++++.. .
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~-~~~~~~~-~~~~P~gia~~pdG~~lyv~d~--~ 290 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET-TPLFTIQ-DSGWEFHIQFHPSGNYAYIVVV--N 290 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE-EEEEECS-SSSCCEEEEECTTSSEEEEEET--T
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEEEcC-CCCcceeEEEcCCCCEEEEEEC--C
Confidence 211122222 23456788999 677666666778999999764321 1122221 2234678999999987777765 7
Q ss_pred CCeEEEEECCC--Cce--EEEeecC----------------CcEe-EEEeC--------CCCceeeeeeeeeeecCCCeE
Q 019847 213 DGCIKIWNVQK--GTC--IHGIDAK----------------AQIC-GLEWN--------RHHKEILSGHGFSASGDGNKL 263 (335)
Q Consensus 213 d~~i~i~d~~~--~~~--~~~~~~~----------------~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~i 263 (335)
.+.|..++... ++. ...+... .... .+... +++...++ -...+.|
T Consensus 291 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyva------D~~n~~I 364 (430)
T 3tc9_A 291 QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFC------DRENHCI 364 (430)
T ss_dssp TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEE------EGGGTEE
T ss_pred CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEE------ECCCcEE
Confidence 88999987653 221 1122110 0111 23332 22333222 2446778
Q ss_pred EEEECCCCceeeccc-------C----------CCCceeEeEEcCC-CCEEEEEeCCCcEEEEecC
Q 019847 264 CLWKYPNMTKVGELQ-------S----------SNSRILDLSQSPD-GLTVATAGADETIRFWEAF 311 (335)
Q Consensus 264 ~i~d~~~~~~~~~~~-------~----------~~~~i~~~~~~~~-~~~l~~~~~dg~v~iw~~~ 311 (335)
+.++ .+++...... + .-.....++++|+ +.++++-..+..|+.++++
T Consensus 365 ~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 365 RILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 8887 3443322111 0 0124688999994 6666665667788887764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.4e-06 Score=71.53 Aligned_cols=239 Identities=7% Similarity=-0.025 Sum_probs=141.8
Q ss_pred CCceEEEEcCC--CCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCC---C-cEEEEeccc
Q 019847 59 DYPTSVSWSHD--AKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD---K-SIINHDVRV 132 (335)
Q Consensus 59 ~~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g-~i~~~d~~~ 132 (335)
.....++|+|+ +..|..+...+.|+.+|..+++...... .......+++++ +++++++.... . .+...+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCC
Confidence 34679999984 4556666544899999998777654433 445688999999 77755544321 1 233333332
Q ss_pred CCeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCC
Q 019847 133 SNNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGR 211 (335)
Q Consensus 133 ~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~ 211 (335)
.......+. .......++++| ++.++++-..++.|+.+|...+.....+.... ....-..++|+|++..++++..
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~-~~~~~~~ia~dpdG~~LYvad~-- 292 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD-TKGSNFHIVWHPTGDWAYIIYN-- 292 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS-CCSSCEEEEECTTSSEEEEEET--
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC-CCCCcccEEEeCCCCEEEEEeC--
Confidence 221111121 233456688899 67666666667889999976432211222111 1222346999999987777765
Q ss_pred CCCeEEEEECC--CCce--EEEeec----------------CCcEeEEEe---------CCCCceeeeeeeeeeecCCCe
Q 019847 212 EDGCIKIWNVQ--KGTC--IHGIDA----------------KAQICGLEW---------NRHHKEILSGHGFSASGDGNK 262 (335)
Q Consensus 212 ~d~~i~i~d~~--~~~~--~~~~~~----------------~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 262 (335)
..+.|+.++.. ++.. ...+.. -.....+++ .+++...++- ...+.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD------~~n~~ 366 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCD------RDSHT 366 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEE------TTTTE
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEE------CCCCE
Confidence 67899998865 2321 111111 013556787 5666554443 55788
Q ss_pred EEEEECCCCceeecccCC------------------CCceeEeEEc-CCCCEEEEEeCCCcEEEEecC
Q 019847 263 LCLWKYPNMTKVGELQSS------------------NSRILDLSQS-PDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 263 i~i~d~~~~~~~~~~~~~------------------~~~i~~~~~~-~~~~~l~~~~~dg~v~iw~~~ 311 (335)
|+.++. ++... ++.+. -.....|+++ +++.++++=..++.|+.++++
T Consensus 367 I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 367 VRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 888884 44332 22111 1236789999 677766666677888888764
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.87 E-value=8.2e-06 Score=65.90 Aligned_cols=222 Identities=8% Similarity=0.014 Sum_probs=129.9
Q ss_pred cceeeeecCC-ceEEEe-cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCC--cEEEEeCCCceeE
Q 019847 18 YSKVIDWGRN-NVLAVA-LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDS--KLQLWDAETSKLV 93 (335)
Q Consensus 18 ~~~~~~~~~~-~~~~~~-~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~ 93 (335)
....++|+++ .++++. .++.|..||.+.. ....... ...+..+++.++|+++++..... .|..++..+++..
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~---~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV---EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC---SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC---CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 4556888764 566655 6789999987653 3333333 24588999999999666554332 4777777777654
Q ss_pred eeecc-cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC-eeeEE--------eecCCCCEEEEEeecCCCEEEEE-
Q 019847 94 RNLEG-HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN-NVTSC--------IKAHSGEVCGLKWSNEGNLLASG- 162 (335)
Q Consensus 94 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~--------~~~~~~~i~~~~~~~~~~~l~~~- 162 (335)
..... .......++..+ ++..+++-..++.|..+|..... .+... ....-.....+ +|+++.|..+
T Consensus 109 ~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 32221 112223344334 44455555568889888876432 11100 00111234556 7887766555
Q ss_pred eCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEE--EeecC-CcEeEE
Q 019847 163 GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIH--GIDAK-AQICGL 239 (335)
Q Consensus 163 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~--~~~~~-~~~~~~ 239 (335)
...+.|..+++...........+.. ......++++++|. ++++.. ..+.|.++|.. ++... .+... ....++
T Consensus 186 ~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~-l~va~~--~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~ 260 (306)
T 2p4o_A 186 TEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN-LYGATH--IYNSVVRIAPD-RSTTIIAQAEQGVIGSTAV 260 (306)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC-EEEECB--TTCCEEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred CCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCC-EEEEeC--CCCeEEEECCC-CCEEEEeecccccCCceEE
Confidence 4567899999874111111111111 13456789999995 566544 57889999975 65532 33333 568889
Q ss_pred EeC---CCCceeeee
Q 019847 240 EWN---RHHKEILSG 251 (335)
Q Consensus 240 ~~~---~~~~~~~~~ 251 (335)
+|. |++..|++.
T Consensus 261 a~~g~~~d~~~LyVt 275 (306)
T 2p4o_A 261 AFGQTEGDCTAIYVV 275 (306)
T ss_dssp EECCSTTTTTEEEEE
T ss_pred EEecccCCCCEEEEE
Confidence 998 787777654
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.86 E-value=9e-06 Score=68.94 Aligned_cols=199 Identities=10% Similarity=0.053 Sum_probs=115.3
Q ss_pred ceeeeecC----CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCC-----cEEEEeCCC
Q 019847 19 SKVIDWGR----NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDS-----KLQLWDAET 89 (335)
Q Consensus 19 ~~~~~~~~----~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~ 89 (335)
...++|++ +.++++...+.|+.++..+++..... .....+..++++++|+ |+++...+ .+...+...
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~---~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT---TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC---CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee---cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 45688885 45666655588999998888764432 2345689999999999 54444321 133333221
Q ss_pred cee-EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee-cCCCCEEEEEeecCCCEEEEE-eCCC
Q 019847 90 SKL-VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK-AHSGEVCGLKWSNEGNLLASG-GDDN 166 (335)
Q Consensus 90 ~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~-~~dg 166 (335)
+.. ...+. .......+++.|.++.++++-..++.|+.+|..++........ +....-..++|+|+++.|..+ ...+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 111 01111 2244567888885666666666778899999875543122222 122233579999999855554 4567
Q ss_pred eEEEEEccCCCc-ccceeeccC---------------CCCCeeEEEe---------cCCCCcEEEEecCCCCCeEEEEEC
Q 019847 167 VVRIWERSKMSS-SKSLHRFTD---------------HCGGVKALAW---------SPHQVNVLATGGGREDGCIKIWNV 221 (335)
Q Consensus 167 ~i~iwd~~~~~~-~~~~~~~~~---------------~~~~v~~~~~---------~~~~~~~~~~~~g~~d~~i~i~d~ 221 (335)
.|+.++...... ......+.+ .-.....+++ .+++ .++++-. ..+.|+.++.
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD~--~n~~I~~~~~ 372 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCDR--DSHTVRVLTP 372 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEET--TTTEEEEECT
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEEC--CCCEEEEECC
Confidence 899988653111 000011111 1123567888 5655 5666654 6788999985
Q ss_pred CCCce
Q 019847 222 QKGTC 226 (335)
Q Consensus 222 ~~~~~ 226 (335)
++..
T Consensus 373 -~G~v 376 (433)
T 4hw6_A 373 -EGRV 376 (433)
T ss_dssp -TSEE
T ss_pred -CCCE
Confidence 5543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-07 Score=84.81 Aligned_cols=248 Identities=7% Similarity=-0.065 Sum_probs=146.5
Q ss_pred CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCC----ceeEeeeccccc
Q 019847 27 NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAET----SKLVRNLEGHHR 101 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~----~~~~~~~~~~~~ 101 (335)
..++..+..+.|+..++++.+...... ....+..++|.+.+..|+.+. ..+.|+.+++.. ......+.....
T Consensus 377 ~~~ll~~~~~~I~~id~~~~~~~~~~~---~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~ 453 (699)
T 1n7d_A 377 IAYLFFTNRHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 453 (699)
T ss_dssp CCCBCCCCTTC-CEECTTSCCEECCSC---CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC-
T ss_pred ceeEEecCccceEEEeCCCCcceeeec---cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCC
Confidence 334444556788888887766543322 234567899999777776654 467899999875 222222222223
Q ss_pred ceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC-C-CeEEEEEccCCCcc
Q 019847 102 RVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD-D-NVVRIWERSKMSSS 179 (335)
Q Consensus 102 ~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~ 179 (335)
....+++.+..++++++-...+.|.++++.... ..............+++.|.+.+|+.+.. . +.|..+++.... .
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~ 531 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-I 531 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-C
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCc-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-e
Confidence 456678875466666766677899999987433 22222222344578899996555555443 2 678887765321 1
Q ss_pred cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC---CcEeEEEeCCCCceeeeeeeeee
Q 019847 180 KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK---AQICGLEWNRHHKEILSGHGFSA 256 (335)
Q Consensus 180 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 256 (335)
..+ ....-.....|+|+|++..|+.+-. ..+.|..+++........+... .....+++..+ .++ .+
T Consensus 532 ~~l--~~~~l~~PnGlavd~~~~~LY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~ly-----wt 600 (699)
T 1n7d_A 532 YSL--VTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVF-----WT 600 (699)
T ss_dssp CEE--SCSSCSSCCCEEECTTTCCEEEEET--TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEE-----EE
T ss_pred eEE--EeCCCCCccEEEEeccCCEEEEEec--CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEE-----EE
Confidence 111 1112234678999999888888876 6789999998743332222211 22344555433 232 22
Q ss_pred ecCCCeEEEEECCCCceeecccCCCCceeEeEEc
Q 019847 257 SGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQS 290 (335)
Q Consensus 257 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 290 (335)
....+.|..++..+++.+..+.........|++.
T Consensus 601 d~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 601 DIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp CSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred eCCCCeEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence 2557899999988888777765433334555543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.82 E-value=9.4e-07 Score=80.57 Aligned_cols=243 Identities=13% Similarity=0.072 Sum_probs=131.9
Q ss_pred cceeeeec-CC-ceEEEec--CC----eEEEEEecCC-ceeeEEeecCCCCCceEEEEcCCCCEEEEEECC-----CcEE
Q 019847 18 YSKVIDWG-RN-NVLAVAL--GP----VLFLWKWENG-KVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD-----SKLQ 83 (335)
Q Consensus 18 ~~~~~~~~-~~-~~~~~~~--~~----~i~vw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~ 83 (335)
......|+ ++ ..++.+. +| .|+++|+.++ +.... .+. .....++|+|||+.|+....+ ..|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEE---EECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-ccc---CceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 45678899 64 4555432 22 4999999988 63211 111 113468899999988887765 2688
Q ss_pred EEeCCCcee--Eeeec-ccccceeEeeecCCCCCEEEEeeC---CCcEEEEecccCC-ee--eEEeecCCCCEEEEEeec
Q 019847 84 LWDAETSKL--VRNLE-GHHRRVATSSWNHWNGHILTSGSK---DKSIINHDVRVSN-NV--TSCIKAHSGEVCGLKWSN 154 (335)
Q Consensus 84 iw~~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~-~~--~~~~~~~~~~i~~~~~~~ 154 (335)
++++.+++. ...+. ........+.|+| +++.|+..+. ...|.++|+.++. .. ............++.|+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~ 329 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG 329 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee
Confidence 888877642 22222 2223456788999 8887776553 3468888887642 22 222333445556666554
Q ss_pred CCCEEEEEeCC----CeEEEEEccCCCcccceeeccCCCC--CeeEEEecCCCCcEEEEecCCCCCe--EEEEEC-----
Q 019847 155 EGNLLASGGDD----NVVRIWERSKMSSSKSLHRFTDHCG--GVKALAWSPHQVNVLATGGGREDGC--IKIWNV----- 221 (335)
Q Consensus 155 ~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~g~~d~~--i~i~d~----- 221 (335)
.+.+++....+ ..|..+|+..+...+.. +..+.. .+..+.+ .+..++++.. .++. |.++|+
T Consensus 330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~--li~~~~~~~l~~~~~--~~~~lv~~~~--~~g~~~l~~~dl~~~~~ 403 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHV--LVDHSEDVFMESIAV--RSNYLVVAGR--RAGLTRIWTMMADSQDG 403 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEEEETTSTTCCCCE--EECCCSSEEEEEEEE--CSSEEEEEEE--ETTEEEEEEEECCTTTS
T ss_pred CCEEEEEeCCCCCCCcEEEEEcCCCcccceee--EECCCCCcEEEEEEE--ECCEEEEEEE--eCCEEEEEEEecccccc
Confidence 44444444443 25666776532111220 222333 3444554 4556777765 6665 556665
Q ss_pred --CCCceEEEeecCCc--EeEEEe----CCCCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 222 --QKGTCIHGIDAKAQ--ICGLEW----NRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 222 --~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
..++....+..... +..+.+ ++++..++... .+...-..+..+|+.+++.
T Consensus 404 ~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~--ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 404 VFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEY--SSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp CCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEE--EETTEEEEEEEECTTTCCE
T ss_pred cccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEE--eCCCCCCEEEEEECCCCcE
Confidence 34431344433322 334433 44666554331 1112335677788776653
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.6e-05 Score=62.78 Aligned_cols=270 Identities=10% Similarity=0.043 Sum_probs=148.3
Q ss_pred cccceeeeecC-CceEEEecCCeEEEEEecCCceeeEEee--cCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 16 DYYSKVIDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQV--PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 16 ~~~~~~~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
...+.++.+.+ +..++++..+.| +...+.++.=..... ......+..+.|.+ +..++ ++..|.|.. ..+.++.
T Consensus 35 ~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQS 110 (327)
T ss_dssp SSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSS
T ss_pred CCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCC
Confidence 34677788865 566667777765 333444432122222 12344688999986 44444 455664443 2233332
Q ss_pred Eeeec---ccccceeEeeecCCCCCEEEEeeCCCcEEEEeccc-CCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeE
Q 019847 93 VRNLE---GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRV-SNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVV 168 (335)
Q Consensus 93 ~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (335)
-.... .+...+..+.+.+ ++..++.+ .+|.|. .... +..-..........+..+.+.+++.+++.+. +|.+
T Consensus 111 W~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~--~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~ 185 (327)
T 2xbg_A 111 WSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIY--RTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSF 185 (327)
T ss_dssp CEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEE--EESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSE
T ss_pred ceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEE--EEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcE
Confidence 22221 2334567777765 55555554 455442 2222 2222233334566789999999988877765 4544
Q ss_pred EE-EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-----CCcEeEEEeC
Q 019847 169 RI-WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-----KAQICGLEWN 242 (335)
Q Consensus 169 ~i-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~ 242 (335)
.. .|- .+...+.+. ......+..+.+.+++. +++.+ .+|.+++.+...++.-..+.. ...+..+.+.
T Consensus 186 ~~S~d~-gG~tW~~~~--~~~~~~~~~~~~~~~g~-~~~~~---~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~ 258 (327)
T 2xbg_A 186 YSTWEP-GQTAWEPHN--RTTSRRLHNMGFTPDGR-LWMIV---NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR 258 (327)
T ss_dssp EEEECT-TCSSCEEEE--CCSSSCEEEEEECTTSC-EEEEE---TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred EEEeCC-CCCceeECC--CCCCCccceeEECCCCC-EEEEe---CCceEEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence 43 331 122333332 23445688899999875 55554 578887765333443332321 2347888898
Q ss_pred CCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc---CCCCceeEeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 243 RHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ---SSNSRILDLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
+++..++.+ .++.+ .+..+.++.-..+. .....+.++.|.+++. +++++.+|.|.-++-
T Consensus 259 ~~~~~~~~g-------~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 259 TPNEVWLAG-------GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp SSSCEEEEE-------STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred CCCEEEEEe-------CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 887766654 25655 34444444333222 2345678888876654 666778897766543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.4e-06 Score=75.74 Aligned_cols=245 Identities=13% Similarity=0.061 Sum_probs=131.4
Q ss_pred eEEEEcC-CCCEEEEEECCC-----------cEEEEeCCCceeEe--eecc-cccceeEeeecCCCCCEEEEeeC-CCcE
Q 019847 62 TSVSWSH-DAKTLAVGYMDS-----------KLQLWDAETSKLVR--NLEG-HHRRVATSSWNHWNGHILTSGSK-DKSI 125 (335)
Q Consensus 62 ~~~~~~~-~~~~l~~~~~dg-----------~i~iw~~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~~l~~~~~-dg~i 125 (335)
..+++.| +++.++.|+.+. .+.+||..+++... .+.. +.....++++.. ++.+++.|+. +..+
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKT 267 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCE
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCce
Confidence 3667777 888888887543 58899998875432 2211 222233456666 8899999984 4589
Q ss_pred EEEecccCCeeeEEeecC-CCCEEEEEeecCCCEEEEEe-CC-----CeEEEEEccCCCccccee-----eccCCCCCee
Q 019847 126 INHDVRVSNNVTSCIKAH-SGEVCGLKWSNEGNLLASGG-DD-----NVVRIWERSKMSSSKSLH-----RFTDHCGGVK 193 (335)
Q Consensus 126 ~~~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~~-----~~~~~~~~v~ 193 (335)
.+||..+..... ..... ...-.+++..+++++++.|+ .+ ..+.+||..+.. ...+. .+.....
T Consensus 268 ~~yd~~t~~W~~-~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~-W~~~~~~~~~p~~~~~~--- 342 (656)
T 1k3i_A 268 SLYDSSSDSWIP-GPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT-WTSLPNAKVNPMLTADK--- 342 (656)
T ss_dssp EEEEGGGTEEEE-CCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE-EEEETTSCSGGGCCCCT---
T ss_pred EEecCcCCceeE-CCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc-ceeCCCccccccccccc---
Confidence 999988654321 11111 11123455567899999988 34 468999976532 12110 0100000
Q ss_pred EEEecCCCCcEEEEecC-------CCCCeEEEEECCCCceEEEeecCC----------cEeEEEeC-CCCceeeeeeeee
Q 019847 194 ALAWSPHQVNVLATGGG-------REDGCIKIWNVQKGTCIHGIDAKA----------QICGLEWN-RHHKEILSGHGFS 255 (335)
Q Consensus 194 ~~~~~~~~~~~~~~~~g-------~~d~~i~i~d~~~~~~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~~~ 255 (335)
...+..++ .+++.++. .....+..||..+........... .-.++.+. .+++.++.|..-.
T Consensus 343 ~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~ 421 (656)
T 1k3i_A 343 QGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPD 421 (656)
T ss_dssp TGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSS
T ss_pred cceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCC
Confidence 01122333 23333320 023467889988776443322111 12333333 3566666552100
Q ss_pred e--ecCCC---eEEEEECCCCceeecc--cCCCCce-eEeEEcCCCCEEEEEeCC-----------CcEEEEecCCC
Q 019847 256 A--SGDGN---KLCLWKYPNMTKVGEL--QSSNSRI-LDLSQSPDGLTVATAGAD-----------ETIRFWEAFGP 313 (335)
Q Consensus 256 ~--~~~~~---~i~i~d~~~~~~~~~~--~~~~~~i-~~~~~~~~~~~l~~~~~d-----------g~v~iw~~~~~ 313 (335)
. ...-. .+.+||..+.+-.... ..+..+. .+++..|++++++.|+.+ ..+.+||....
T Consensus 422 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 422 YQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp SSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred CCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence 0 00011 6788887765543322 2222222 345667899999999864 46889998664
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.76 E-value=3e-05 Score=60.18 Aligned_cols=204 Identities=12% Similarity=0.175 Sum_probs=127.4
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
.+.+-...+..++|.|..+.++++...++.|...|.. ++........-....-.+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3445556799999999445566667888899999987 443333222333567889999888776766567889999876
Q ss_pred CCCcccceeec------cCCCCCeeEEEecCCCCcEEEEecCCCCC-eEEEEEC-CCCceEEEeec--------CCcEeE
Q 019847 175 KMSSSKSLHRF------TDHCGGVKALAWSPHQVNVLATGGGREDG-CIKIWNV-QKGTCIHGIDA--------KAQICG 238 (335)
Q Consensus 175 ~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~d~-~i~i~d~-~~~~~~~~~~~--------~~~~~~ 238 (335)
.......+... ...+.....++|+|.+..++++.- .+. .|+.|+- .....+..+.. -..+..
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E--~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~ 177 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE--KNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSG 177 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE--SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEEC--cCCceEEEEcccccCCceeeecchhhccccccCCcee
Confidence 54321111111 123455789999999988888763 333 4555551 11111222211 235788
Q ss_pred EEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC---------CceeEeEEcCCCCEEEEEeCCCcEEEE
Q 019847 239 LEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN---------SRILDLSQSPDGLTVATAGADETIRFW 308 (335)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~v~iw 308 (335)
++++|....++.- +.....+.++|.. ++.+..+.-.. .....|+|.++|++.++ ++-+.++.+
T Consensus 178 l~~dp~tg~lliL-----S~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 178 AEFNQQKNTLLVL-----SHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EEEETTTTEEEEE-----ETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred EEEcCCCCeEEEE-----ECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 9999987666443 3678889999965 44544432111 24578999999985555 665544444
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.5e-05 Score=66.60 Aligned_cols=244 Identities=11% Similarity=0.016 Sum_probs=140.7
Q ss_pred ceEEEEcC-CCCEEEEE-ECCCcEEEEeCCCceeEeeeccc---ccceeEeee-------cCCCCCEEEEeeCCC-----
Q 019847 61 PTSVSWSH-DAKTLAVG-YMDSKLQLWDAETSKLVRNLEGH---HRRVATSSW-------NHWNGHILTSGSKDK----- 123 (335)
Q Consensus 61 v~~~~~~~-~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~~l~~~~~dg----- 123 (335)
...|+|+| +...|.++ ...+.|++.|++++......... ......++| ++ +++.|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCccc
Confidence 56899998 34445444 44467999999887765544322 235888999 88 777555555443
Q ss_pred --cEEEEecccCCeee-----EEeecCCCCEEEEEeec-CCCEEEEEeCCCeEEEEEcc-------CCCcc---------
Q 019847 124 --SIINHDVRVSNNVT-----SCIKAHSGEVCGLKWSN-EGNLLASGGDDNVVRIWERS-------KMSSS--------- 179 (335)
Q Consensus 124 --~i~~~d~~~~~~~~-----~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~-------~~~~~--------- 179 (335)
.|.+++........ ..+... .....++++| ++.++++-..++.|..+|+. +....
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 25666543311211 122211 2335678899 55556666678889999987 33220
Q ss_pred --cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEEC--CCCceE--EEeecC----------------CcEe
Q 019847 180 --KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV--QKGTCI--HGIDAK----------------AQIC 237 (335)
Q Consensus 180 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~--~~~~~~--~~~~~~----------------~~~~ 237 (335)
+.+... +.......++|+|++..++++-. ..+.|+.++. ..+... ..+... ....
T Consensus 299 ~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~--~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 299 TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVI--NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp TEEEEEEC-SSSSCCEEEEECTTSSEEEEEET--TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred ccceeEec-CCCCCceEEEEcCCCCEEEEEeC--CCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 112122 22344678999999986777655 6889999664 333220 122110 0122
Q ss_pred -EEEeC-------CCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCC------------------------CCcee
Q 019847 238 -GLEWN-------RHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSS------------------------NSRIL 285 (335)
Q Consensus 238 -~~~~~-------~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~------------------------~~~i~ 285 (335)
.+... +++...++ -.....|+.++ .++. +.++.+. -....
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVa------D~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~ 447 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFV------DRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVS 447 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEE------EGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEE
T ss_pred EEEEEccccccccCCCeEEEE------ECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCc
Confidence 33333 23333332 24578888888 4443 2222111 12357
Q ss_pred EeEEcCC-CCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 286 DLSQSPD-GLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 286 ~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
.|+++++ +.++++=..+.+|+.++++......
T Consensus 448 gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 448 GLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred EEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 8999997 7766666778899999998765443
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=6.5e-05 Score=66.75 Aligned_cols=232 Identities=12% Similarity=0.018 Sum_probs=147.8
Q ss_pred EEEEEECCCcEEEEeCCCceeEeeec-ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEE
Q 019847 72 TLAVGYMDSKLQLWDAETSKLVRNLE-GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGL 150 (335)
Q Consensus 72 ~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~ 150 (335)
+|+.+ ..+.|+..++++.+....+. ..-..+..++|.+.++.++++-..++.|..+++.... ..............+
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LEHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cEEEEeCCCCCcceE
Confidence 55554 45689999998665433322 1234678999998566666676778899999987433 233333223456788
Q ss_pred EeecCCCEE-EEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEE
Q 019847 151 KWSNEGNLL-ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHG 229 (335)
Q Consensus 151 ~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~ 229 (335)
++.+.++.| ++-...+.|.+.++.... ...+. ...-.....++++|....++.+..| ..+.|...++........
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~--~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG~~~~~l 161 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLV--WKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSERTTL 161 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTT-CEEEE--CSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEEE
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEE--eCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCCCceEEE
Confidence 888755544 554556789999976432 12221 1233457899999976677777521 357888888875554444
Q ss_pred eecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 230 IDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
...-.....+++++++..++... ...+.|..+|+..... ..+.........+++.. +.++++-...+.|...|
T Consensus 162 ~~~~~~P~GlalD~~~~~LY~aD-----~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 162 VPNVGRANGLTIDYAKRRLYWTD-----LDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred ECCCCCcceEEEccccCEEEEEE-----CCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 44455788999999888776553 5678999999876443 22333333456778765 34444545578888888
Q ss_pred cCCCCCC
Q 019847 310 AFGPSGD 316 (335)
Q Consensus 310 ~~~~~~~ 316 (335)
..+++..
T Consensus 235 k~tg~~~ 241 (628)
T 4a0p_A 235 KTSGQNR 241 (628)
T ss_dssp TTTCCSC
T ss_pred CCCCCce
Confidence 7665543
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=6.2e-05 Score=62.08 Aligned_cols=278 Identities=9% Similarity=0.075 Sum_probs=181.2
Q ss_pred ccceeeeecCCceEEEec----CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 17 YYSKVIDWGRNNVLAVAL----GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~----~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
+....+.+..++++++-. +..|.|.|+..+.........+ -+.-.+|..+.+|.-. ...+.|+|+++.+.
T Consensus 25 i~f~~~TmESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~A-----dsAIMnP~~~iiALra-g~~lQiFnle~K~k 98 (494)
T 1bpo_A 25 IGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISA-----DSAIMNPASKVIALKA-GKTLQIFNIEMKSK 98 (494)
T ss_dssp CSTTTEEEEETTEEEEEECCTTCCEEEEEETTSTTSCEEEECCC-----SEEEECSSSSCEEEEE-TTEEEEEETTTTEE
T ss_pred cccceeeeecCceEEEEecCCCCCeEEEEECCCCCcceeccccc-----ceeeeCCCCcEEEEec-CCeEEEEchHHhhh
Confidence 333445555677777643 3479999988866543333322 3456899888888775 67999999999998
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCC----CCEEEEEeecCCCEEEEEeC----
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHS----GEVCGLKWSNEGNLLASGGD---- 164 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~---- 164 (335)
++.+.- ...|.--.|.. .+.|+-.+ +..|+.|++.....+.+.+..|. ..|.....+++.++++..+-
T Consensus 99 lks~~~-~e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~ 174 (494)
T 1bpo_A 99 MKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQ 174 (494)
T ss_dssp EEEEEC-SSCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEET
T ss_pred hcceec-CCCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccC
Confidence 888774 45677888874 44454443 56899999986555666665553 46777788889998875442
Q ss_pred ---CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCC--CCcEEEEec-CCCCCeEEEEECCCC---c-----eEEEe
Q 019847 165 ---DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH--QVNVLATGG-GREDGCIKIWNVQKG---T-----CIHGI 230 (335)
Q Consensus 165 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~-g~~d~~i~i~d~~~~---~-----~~~~~ 230 (335)
.|.+.+|..+. +.-+.+++|......+....+ ...+++.+. ....+.+++.++... . ....+
T Consensus 175 ~~v~G~mQLYS~er----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv 250 (494)
T 1bpo_A 175 NRVVGAMQLYSVDR----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV 250 (494)
T ss_dssp TEEEEEEEEEESTT----CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEEC
T ss_pred CcccceEEEeeccc----cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeee
Confidence 36788998765 345566777655544444322 123555443 112378999988542 1 11111
Q ss_pred e--c---CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcE
Q 019847 231 D--A---KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETI 305 (335)
Q Consensus 231 ~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 305 (335)
. . ..-..++..++....+..- +.-|.+++||+.++.++..-+-....|..-+-+....=++.....|.|
T Consensus 251 ~fppe~~~DFPvamqvs~kygviyvi------TK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 251 FFPPEAQNDFPVAMQISEKHDVVFLI------TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp CCCTTSTTCCEEEEEEETTTTEEEEE------ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred eCCcccccCceeEEEecccCCEEEEE------ecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 1 1 1235667777777766554 678999999999999998877666667665555554556666688888
Q ss_pred EEEecCCCC
Q 019847 306 RFWEAFGPS 314 (335)
Q Consensus 306 ~iw~~~~~~ 314 (335)
.--.++...
T Consensus 325 l~v~v~e~~ 333 (494)
T 1bpo_A 325 LSVCVEEEN 333 (494)
T ss_dssp EEEEECTTT
T ss_pred EEEEEcccc
Confidence 777666544
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=0.0001 Score=67.13 Aligned_cols=233 Identities=12% Similarity=0.024 Sum_probs=142.0
Q ss_pred EEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC---eeeEEeecCCCCEE
Q 019847 72 TLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN---NVTSCIKAHSGEVC 148 (335)
Q Consensus 72 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~i~ 148 (335)
+|+.+. ...|+..++...+....+. ....+..++|.+..+.++++-...+.|+.+++.... .....+........
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 444443 4568888887665444333 445678899988556666666677889999887421 12233333445567
Q ss_pred EEEeecCCC-EEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceE
Q 019847 149 GLKWSNEGN-LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI 227 (335)
Q Consensus 149 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~ 227 (335)
.|++.+.++ ++++-...+.|.+.++..... ..+ +...-.....|+++|.+.+|+.+..| ..+.|...++......
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l--~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG~~~~ 550 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTL--FRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIY 550 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEE--EECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCCEE
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEE--EeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecCCCceE
Confidence 899988665 444555678999999874321 111 22233457899999987778777531 2378999998754443
Q ss_pred EEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccC--CCCceeEeEEcCCCCEEEEEeCCCc
Q 019847 228 HGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS--SNSRILDLSQSPDGLTVATAGADET 304 (335)
Q Consensus 228 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~ 304 (335)
..+... .....|++++.+..|+... ...+.|..+++........+.. ......+|++..+ .++++-...+.
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD-----~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~ 624 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVD-----SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEA 624 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTE
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEe-----CCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCE
Confidence 333322 4688999998877776543 4568899999865544333322 1223456666433 34444445677
Q ss_pred EEEEecCCCCCC
Q 019847 305 IRFWEAFGPSGD 316 (335)
Q Consensus 305 v~iw~~~~~~~~ 316 (335)
|...+..+++..
T Consensus 625 I~~~dk~tG~~~ 636 (791)
T 3m0c_C 625 IFSANRLTGSDV 636 (791)
T ss_dssp EEEEETTTCCCC
T ss_pred EEEEeCCCCcce
Confidence 777776555443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=0.00012 Score=64.87 Aligned_cols=232 Identities=7% Similarity=-0.075 Sum_probs=135.6
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCcee-EeeecccccceeE
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETSKL-VRNLEGHHRRVAT 105 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~-~~~~~~~~~~v~~ 105 (335)
.++.-+....|+..+++........... .-..+..++|++.+..|..+. ..+.|..++++.... ...+...-.....
T Consensus 10 ~~~~~~~~~~I~~i~~~~~~~~~~~~~~-~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~G 88 (619)
T 3s94_A 10 PLLLYANRRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 88 (619)
T ss_dssp CCEEEECSSBEEEECCC---------CB-CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEE
T ss_pred ceEEEeccccEEEEeCCCCcceEEEEEc-CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCe
Confidence 3555667788999998765322222222 234578999999777776665 467898898875432 2223323356788
Q ss_pred eeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC--CCeEEEEEccCCCccccee
Q 019847 106 SSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD--DNVVRIWERSKMSSSKSLH 183 (335)
Q Consensus 106 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~ 183 (335)
+++.+..++++++-...+.|.+.++..... .......-.....|++.|.+..|..+.. .+.|...++.... ...+
T Consensus 89 lAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~-~~~l- 165 (619)
T 3s94_A 89 LACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFII- 165 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEE-
T ss_pred EEEEecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc-eEEE-
Confidence 998874566666667788999999874332 2223234455678999997666665553 3567777765321 1122
Q ss_pred eccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCe
Q 019847 184 RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNK 262 (335)
Q Consensus 184 ~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (335)
....-.....+++++++..|+.+-. ..+.|..+|+.......... .......+++..+ .++.. -...+.
T Consensus 166 -~~~~~~~P~Glald~~~~~LY~aD~--~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~t-----d~~~~~ 235 (619)
T 3s94_A 166 -INSEIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWT-----DWSTHS 235 (619)
T ss_dssp -ECSSCSSEEEEEEETTTTEEEEEET--TTCCEEEESSSCCEEC---------CCCEEESSS--EEEEE-----CTTTCS
T ss_pred -EeCCCCCCcEEEEEccCCEEEEEeC--CCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEe-----cCCCCE
Confidence 1123345789999998888888876 77899999987543322222 1122345666554 33222 245677
Q ss_pred EEEEECCCCce
Q 019847 263 LCLWKYPNMTK 273 (335)
Q Consensus 263 i~i~d~~~~~~ 273 (335)
|...|..+++.
T Consensus 236 V~~~d~~tg~~ 246 (619)
T 3s94_A 236 ILACNKYTGEG 246 (619)
T ss_dssp EEEEESSSCCC
T ss_pred EEEEECCCCcc
Confidence 88888766543
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.62 E-value=3.2e-05 Score=62.42 Aligned_cols=197 Identities=17% Similarity=0.236 Sum_probs=124.4
Q ss_pred CCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCC---CCC---EEEEeeC---CCcEEEEecccCCeeeEE
Q 019847 69 DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW---NGH---ILTSGSK---DKSIINHDVRVSNNVTSC 139 (335)
Q Consensus 69 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~---~l~~~~~---dg~i~~~d~~~~~~~~~~ 139 (335)
...+++.....+-+.+||+ +|+.++.+.. +.+..+...|. .+. ++++... +++|.+|++......+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3455666667789999999 8888888763 45666666541 111 3344443 578999977422222332
Q ss_pred eec------CC-CCEEEEEe--ecC-CC-EEEEEeCCCeEEEEEccCC----CcccceeeccCCCCCeeEEEecCCCCcE
Q 019847 140 IKA------HS-GEVCGLKW--SNE-GN-LLASGGDDNVVRIWERSKM----SSSKSLHRFTDHCGGVKALAWSPHQVNV 204 (335)
Q Consensus 140 ~~~------~~-~~i~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 204 (335)
... .. ..+..+++ +|. +. ++++...+|.+..|++... ...+.++++.- .+.+..+...+....+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL 194 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence 211 11 55666777 664 43 6888888999999998542 12344555543 4578888899887777
Q ss_pred EEEecCCCCCeEEEEECC-----CCceEEEeecC---CcEeEEEe--CCCCc-eeeeeeeeeeecCCCeEEEEECC-CCc
Q 019847 205 LATGGGREDGCIKIWNVQ-----KGTCIHGIDAK---AQICGLEW--NRHHK-EILSGHGFSASGDGNKLCLWKYP-NMT 272 (335)
Q Consensus 205 ~~~~~g~~d~~i~i~d~~-----~~~~~~~~~~~---~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~i~i~d~~-~~~ 272 (335)
++.- ++..|..++.+ +++.+..+... ..+..+++ .++++ +++++ +..++...+||.. +.+
T Consensus 195 yv~e---Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivS-----sQG~~s~~Vydr~~~~~ 266 (355)
T 3amr_A 195 YIAE---EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMAS-----SQGNSSYAIYDRQGKNK 266 (355)
T ss_dssp EEEE---TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEE-----EGGGTEEEEEESSTTCC
T ss_pred EEec---ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEE-----cCCCCEEEEEECCCCCc
Confidence 7754 67667777755 34555555333 46777777 45554 45443 2457899999996 666
Q ss_pred eeecc
Q 019847 273 KVGEL 277 (335)
Q Consensus 273 ~~~~~ 277 (335)
.+..+
T Consensus 267 ~vg~f 271 (355)
T 3amr_A 267 YVADF 271 (355)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66666
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.60 E-value=0.00011 Score=59.79 Aligned_cols=234 Identities=10% Similarity=0.100 Sum_probs=128.5
Q ss_pred cccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeec-CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeE-
Q 019847 16 DYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVP-GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV- 93 (335)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~- 93 (335)
+..+..+.++++.+++++..+.|+. ..+.++.-...... .+...+..+.+.+++..++++ .+|.|..- .+.++.-
T Consensus 79 ~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~ 155 (327)
T 2xbg_A 79 DYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQ 155 (327)
T ss_dssp CCEEEEEEEETTEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEE
T ss_pred CccEEEEEecCCeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCE
Confidence 4456778888877777777775544 33334432222211 233457788887777666555 46654321 2223221
Q ss_pred eeecccccceeEeeecCCCCCEEEEeeCCCcEEE-EecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE
Q 019847 94 RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIIN-HDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172 (335)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~-~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 172 (335)
.........+..+.+.+ ++.+++.+. +|.+.. .|-. +..-..........+..+.+.++++.++ ++.+|.+++.+
T Consensus 156 ~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~ 231 (327)
T 2xbg_A 156 ALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSD 231 (327)
T ss_dssp EEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEE
T ss_pred EeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEec
Confidence 12223455788899988 777776654 444433 3321 1111111234556788999999887664 45678887764
Q ss_pred ccCCCcccceeec-cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec----CCcEeEEEeCCCCce
Q 019847 173 RSKMSSSKSLHRF-TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA----KAQICGLEWNRHHKE 247 (335)
Q Consensus 173 ~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 247 (335)
...+.....+... ......+..+.+.+++ .+++++ .++.+ ++....++.-..+.. +..+..+.+.+++..
T Consensus 232 ~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~-~~~~~g---~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~ 306 (327)
T 2xbg_A 232 PDNSENWGELLSPLRRNSVGFLDLAYRTPN-EVWLAG---GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQG 306 (327)
T ss_dssp TTEEEEECCCBCTTSSCCSCEEEEEESSSS-CEEEEE---STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEE
T ss_pred CCCCCeeEeccCCcccCCcceEEEEecCCC-EEEEEe---CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCce
Confidence 2222222222211 0122358889998876 466665 46766 444455544433331 346778888766665
Q ss_pred eeeeeeeeeecCCCeEEEEEC
Q 019847 248 ILSGHGFSASGDGNKLCLWKY 268 (335)
Q Consensus 248 ~~~~~~~~~~~~~~~i~i~d~ 268 (335)
++. +.+|.|.-++-
T Consensus 307 ~~~-------G~~G~i~~~~~ 320 (327)
T 2xbg_A 307 FIL-------GQKGILLRYVT 320 (327)
T ss_dssp EEE-------CSTTEEEEECC
T ss_pred EEE-------cCCceEEEEcC
Confidence 554 45777766653
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=0.00012 Score=65.05 Aligned_cols=228 Identities=16% Similarity=0.095 Sum_probs=133.6
Q ss_pred CCcEEEEeCCCce-eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCC
Q 019847 79 DSKLQLWDAETSK-LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157 (335)
Q Consensus 79 dg~i~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (335)
...|+..++.... ........-..+..++|++.++.++++-...+.|..+++...................+++.+.++
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence 5578888887543 222222334567899999845555556556788998988754322223333335788999999555
Q ss_pred -EEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee-cCCc
Q 019847 158 -LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID-AKAQ 235 (335)
Q Consensus 158 -~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~ 235 (335)
++++-...+.|.+.++..... +.+. ...-.....+++.|.+..++.+.-| ..+.|...++.......... .-..
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~-~~l~--~~~l~~P~~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG~~~~~l~~~~~~~ 172 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLR-KVLF--WQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFIIINSEIYW 172 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSC-EEEE--CSSCSCCCCEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEEEECSSCSS
T ss_pred EEEEEeCCCCEEEEEECCCCCE-EEEE--eCCCCCCceEEEecCCCeEEEeccC-CCCEEEEEECCCCceEEEEeCCCCC
Confidence 445555678999999874321 1121 1233456789999987777777532 35678888876433322222 2345
Q ss_pred EeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 019847 236 ICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
...+++++++..++... ...+.|..+|+..................|++..+ .++.+-...+.|...|..+++.
T Consensus 173 P~Glald~~~~~LY~aD-----~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 173 PNGLTLDYEEQKLYWAD-----AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EEEEEEETTTTEEEEEE-----TTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred CcEEEEEccCCEEEEEe-----CCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 78899999877776543 55788999998754443332222223456777666 4444445677888888876654
Q ss_pred C
Q 019847 316 D 316 (335)
Q Consensus 316 ~ 316 (335)
.
T Consensus 247 ~ 247 (619)
T 3s94_A 247 L 247 (619)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.54 E-value=8.5e-05 Score=59.98 Aligned_cols=187 Identities=13% Similarity=0.236 Sum_probs=119.4
Q ss_pred CCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecC----CC---EEEEEeC---CCeEEEEEccCCCcccc
Q 019847 112 NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNE----GN---LLASGGD---DNVVRIWERSKMSSSKS 181 (335)
Q Consensus 112 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~----~~---~l~~~~~---dg~i~iwd~~~~~~~~~ 181 (335)
...+++.....+-+.+||+ .++. ++.+.. +.++.+..-|+ ++ ++++... +.+|.+|++.... ..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~-l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~--~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKM-LHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN--GT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCE-EEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT--CC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcE-EEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC--Cc
Confidence 3456666677889999999 4555 443432 56777777663 22 2333333 4789999874211 12
Q ss_pred eeeccC------CC-CCeeEEEe--cCCCC-cEEEEecCCCCCeEEEEECC-------CCceEEEeecCCcEeEEEeCCC
Q 019847 182 LHRFTD------HC-GGVKALAW--SPHQV-NVLATGGGREDGCIKIWNVQ-------KGTCIHGIDAKAQICGLEWNRH 244 (335)
Q Consensus 182 ~~~~~~------~~-~~v~~~~~--~~~~~-~~~~~~~g~~d~~i~i~d~~-------~~~~~~~~~~~~~~~~~~~~~~ 244 (335)
+..+.. .. ..+..+|+ +|... ..+.+.. .+|.+..|++. +.+.++++.....+..+...+.
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~--k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~ 190 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG--KEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDE 190 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC--SSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETT
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC--CCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCC
Confidence 333311 11 45667777 77543 3344433 68999999882 3467888888889999999998
Q ss_pred CceeeeeeeeeeecCCCeEEEEECC-----CCceeeccc-CC-CCceeEeEE--cCCCC-EEEEEe-CCCcEEEEecCC
Q 019847 245 HKEILSGHGFSASGDGNKLCLWKYP-----NMTKVGELQ-SS-NSRILDLSQ--SPDGL-TVATAG-ADETIRFWEAFG 312 (335)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~i~d~~-----~~~~~~~~~-~~-~~~i~~~~~--~~~~~-~l~~~~-~dg~v~iw~~~~ 312 (335)
...++.+ .++..|..|+.+ +++.+..+. ++ ...+..|++ .++++ +|++++ .+....+||...
T Consensus 191 ~g~Lyv~------eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 191 YGRLYIA------EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp TTEEEEE------ETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred CCeEEEe------cccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 8888877 566667777754 344554442 22 235788887 45555 666666 577899999963
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-06 Score=78.13 Aligned_cols=225 Identities=12% Similarity=0.014 Sum_probs=130.4
Q ss_pred CCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccC---CeeeEEeecCCCCEEEEEeecC
Q 019847 79 DSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVS---NNVTSCIKAHSGEVCGLKWSNE 155 (335)
Q Consensus 79 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~~i~~~~~~~~ 155 (335)
.+.|+..++.+.+....+. ....+..++|.+..+.++++-...+.|+.+++... ......+.........|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 4578888887766554443 33467789998844445555556688999998741 1111212112223456788754
Q ss_pred -CCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee-cC
Q 019847 156 -GNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID-AK 233 (335)
Q Consensus 156 -~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~ 233 (335)
++++++-...+.|.++++..... ...+.........++++|.+.+|+.+..+ ..+.|..+++........+. .-
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~---~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~~~l~~~~l 539 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKR---KTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENI 539 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCE---EEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCCCEESCSSC
T ss_pred CCcEEEEeccCCeEEEEecCCCce---EEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCeeEEEeCCC
Confidence 44555545567899998764221 11112222446788999987777776431 23678888875432221111 12
Q ss_pred CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc--CCCCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 234 AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ--SSNSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
.....|+++|++..|+... ...+.|..+++........+. ........|++..+ .++++....+.|..++..
T Consensus 540 ~~PnGlavd~~~~~LY~aD-----~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 540 QWPNGITLDLLSGRLYWVD-----SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL 613 (699)
T ss_dssp SSCCCEEECTTTCCEEEEE-----TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETT
T ss_pred CCccEEEEeccCCEEEEEe-----cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEcc
Confidence 3467899999887776543 557889999986533322222 12223456676554 455555667889998875
Q ss_pred CCC
Q 019847 312 GPS 314 (335)
Q Consensus 312 ~~~ 314 (335)
+++
T Consensus 614 ~G~ 616 (699)
T 1n7d_A 614 TGS 616 (699)
T ss_dssp TEE
T ss_pred CCC
Confidence 543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.50 E-value=9.9e-05 Score=59.05 Aligned_cols=203 Identities=12% Similarity=0.090 Sum_probs=128.4
Q ss_pred ccccceeeeecC--CceEEEe-cCCeEEEEEecCCceeeEEeecC----CC--CCceEEEE---cCCCCEEEEEE-----
Q 019847 15 EDYYSKVIDWGR--NNVLAVA-LGPVLFLWKWENGKVKKLLQVPG----ED--DYPTSVSW---SHDAKTLAVGY----- 77 (335)
Q Consensus 15 ~~~~~~~~~~~~--~~~~~~~-~~~~i~vw~~~~~~~~~~~~~~~----~~--~~v~~~~~---~~~~~~l~~~~----- 77 (335)
...+..+..|++ +.++.++ ..++|..|+...+..... .+++ .+ ..+..+.| .|+++++++..
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 345667799987 5666666 689999999986665544 4443 11 13579999 68877777543
Q ss_pred --------CCCcEEEEeCC---CceeEeeec--cc-----------ccceeEeeecCCCCCEEEEeeCC-CcEEEEeccc
Q 019847 78 --------MDSKLQLWDAE---TSKLVRNLE--GH-----------HRRVATSSWNHWNGHILTSGSKD-KSIINHDVRV 132 (335)
Q Consensus 78 --------~dg~i~iw~~~---~~~~~~~~~--~~-----------~~~v~~~~~~~~~~~~l~~~~~d-g~i~~~d~~~ 132 (335)
.+..+..||+. +++.+.... .. ......++..+ +++..++++.. +.|...+...
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTS
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCC
Confidence 25779999999 777665443 11 12478899998 99999998888 8887777663
Q ss_pred CCeeeEEeec-----CCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeec-cCC---CCCeeEE-EecCCCC
Q 019847 133 SNNVTSCIKA-----HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF-TDH---CGGVKAL-AWSPHQV 202 (335)
Q Consensus 133 ~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~---~~~v~~~-~~~~~~~ 202 (335)
. ........ .....+.|+++|+++.|++....|.+..+|++..... .+..- .+. -.....+ ..-.+|+
T Consensus 169 ~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~ 246 (334)
T 2p9w_A 169 K-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNE 246 (334)
T ss_dssp C-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred C-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCE
Confidence 3 22211111 1223668999999999998877999999998843210 12111 011 1122332 3334565
Q ss_pred cEEEEecCCCCCeEEEEECCC
Q 019847 203 NVLATGGGREDGCIKIWNVQK 223 (335)
Q Consensus 203 ~~~~~~~g~~d~~i~i~d~~~ 223 (335)
.++++.. ..+.+.+.+...
T Consensus 247 vllV~~~--~~~~~~l~S~Dg 265 (334)
T 2p9w_A 247 SVLVGAR--APYAISFRSWDN 265 (334)
T ss_dssp EEEEEEE--TTEEEEEECSST
T ss_pred EEEEEcC--CCCEEEEECCCC
Confidence 5455554 456666665544
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00043 Score=59.07 Aligned_cols=155 Identities=8% Similarity=0.085 Sum_probs=97.2
Q ss_pred ceeeeecC---CceEEEec-CCeEEEEEecCCceeeEEeecC-CCCCceEEEE-------cCCCCEEEEEECCC------
Q 019847 19 SKVIDWGR---NNVLAVAL-GPVLFLWKWENGKVKKLLQVPG-EDDYPTSVSW-------SHDAKTLAVGYMDS------ 80 (335)
Q Consensus 19 ~~~~~~~~---~~~~~~~~-~~~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~-------~~~~~~l~~~~~dg------ 80 (335)
...|+++| +.++++.. .+.|++.|.+++.+..+..... ....+..++| ++++++|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 44677775 34555543 3678888988887765554321 2235799999 99999777776543
Q ss_pred -cEEEEeCCC-ceeE-----eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecc-------cCCe-----------
Q 019847 81 -KLQLWDAET-SKLV-----RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR-------VSNN----------- 135 (335)
Q Consensus 81 -~i~iw~~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~-------~~~~----------- 135 (335)
.|.+++... ++.. ..+.. -.....++.+|.++.++++-..++.|..+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred ceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 266665433 2221 12221 23456778888667777777788899999997 3332
Q ss_pred eeEEee-cCCCCEEEEEeecCCCEEEEE-eCCCeEEEEEcc
Q 019847 136 VTSCIK-AHSGEVCGLKWSNEGNLLASG-GDDNVVRIWERS 174 (335)
Q Consensus 136 ~~~~~~-~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~ 174 (335)
...... +.......++|+|++++|..+ +....|+.++..
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 011111 223446789999999965444 456788887654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00028 Score=58.05 Aligned_cols=226 Identities=13% Similarity=0.155 Sum_probs=117.8
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee--Eeeec---ccccceeEeeecCCC----CCEEEEeeCC-----Cc
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL--VRNLE---GHHRRVATSSWNHWN----GHILTSGSKD-----KS 124 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~---~~~~~v~~~~~~~~~----~~~l~~~~~d-----g~ 124 (335)
.....++|.|+|+++ ++..+|.|.+++ +++. +..+. ........++++| + +.+.++-... +.
T Consensus 31 ~~P~~ia~~pdG~l~-V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 31 EVPWALAFLPDGGML-IAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp SCEEEEEECTTSCEE-EEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEE
T ss_pred CCceEEEEcCCCeEE-EEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccE
Confidence 456899999999854 455679999998 3432 22221 2245688999998 5 4444444432 67
Q ss_pred EEEEecccCC-----eeeEEee---cCCCCEEEEEeecCCCEEEEEeC-------------CCeEEEEEccCCC------
Q 019847 125 IINHDVRVSN-----NVTSCIK---AHSGEVCGLKWSNEGNLLASGGD-------------DNVVRIWERSKMS------ 177 (335)
Q Consensus 125 i~~~d~~~~~-----~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~------ 177 (335)
|..++..... .+...+. ........++|.|+|.++++.+. .|.|.-++....-
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 7788776321 1122122 11112368999999976666432 2566666644200
Q ss_pred -----cccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC-------eEEEEECCCCc------------------eE
Q 019847 178 -----SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG-------CIKIWNVQKGT------------------CI 227 (335)
Q Consensus 178 -----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~-------~i~i~d~~~~~------------------~~ 227 (335)
....+.. .++ .....++|+|+...++++-.| .+. .|.+. ..+. ++
T Consensus 187 ~~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 187 LGRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLI--VPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TTCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEEC-C------CCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred cCCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEe--ccCCcCCCCcccCCCCCCCCcCCe
Confidence 0001111 122 225678999944456665432 222 23332 2221 11
Q ss_pred EEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce------eecccCCCCceeEeEEcCCCCEEEEEe
Q 019847 228 HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK------VGELQSSNSRILDLSQSPDGLTVATAG 300 (335)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~ 300 (335)
..+..+.....++| .+|..+++ ....+.|...++..... ...+-.....+..+++.|||.++++..
T Consensus 262 ~~~~~~~ap~G~~~-~~G~l~v~------~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 262 YFWPQGFPPGNLAF-FRGDLYVA------GLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EECTTCCCEEEEEE-ETTEEEEE------ETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred EecCCCCCCcceEE-ECCEEEEE------ECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 22222223445555 34443332 24466777776654321 112212235688999999997776654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00042 Score=55.51 Aligned_cols=168 Identities=11% Similarity=0.175 Sum_probs=110.6
Q ss_pred EeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCceeEee-ecc----c--ccceeEeee---cCCCCCEEEEee
Q 019847 52 LQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETSKLVRN-LEG----H--HRRVATSSW---NHWNGHILTSGS 120 (335)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~-~~~----~--~~~v~~~~~---~~~~~~~l~~~~ 120 (335)
+.++......-+++|.+....|..++ ..|.|..|+...+..... +.. . ...+..+.| .| ++.++++..
T Consensus 6 i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~ 84 (334)
T 2p9w_A 6 IDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMK 84 (334)
T ss_dssp EEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEE
T ss_pred EEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEc
Confidence 44555566677899998666777776 789999999976543322 322 1 124578999 57 677777543
Q ss_pred -------------CCCcEEEEecc---cCCeeeEEe-ec-----------CCCCEEEEEeecCCCEEEEEeCC-CeEEEE
Q 019847 121 -------------KDKSIINHDVR---VSNNVTSCI-KA-----------HSGEVCGLKWSNEGNLLASGGDD-NVVRIW 171 (335)
Q Consensus 121 -------------~dg~i~~~d~~---~~~~~~~~~-~~-----------~~~~i~~~~~~~~~~~l~~~~~d-g~i~iw 171 (335)
.+..+..||+. +++.....- .. .......++..++|+..++++.. +.|...
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV 164 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARV 164 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEE
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEE
Confidence 25779999998 555433221 11 12347899999999999999988 887777
Q ss_pred EccCCCccccee-ec--cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC
Q 019847 172 ERSKMSSSKSLH-RF--TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224 (335)
Q Consensus 172 d~~~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 224 (335)
+.... ...... .. .......+.++++|++..|++.. ..|.+..+|+.+.
T Consensus 165 ~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~---~~g~L~~fD~~~p 216 (334)
T 2p9w_A 165 SADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG---GPRALTAFDVSKP 216 (334)
T ss_dssp CTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES---SSSSEEEEECSSS
T ss_pred eCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEc---CCCeEEEEcCCCC
Confidence 75432 111111 01 11122367999999997777765 3899999998843
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00031 Score=66.63 Aligned_cols=280 Identities=8% Similarity=0.069 Sum_probs=169.0
Q ss_pred cccceeeeecCCceEEEe----cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce
Q 019847 16 DYYSKVIDWGRNNVLAVA----LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~----~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
.+....+.+..++++++- .+..|.|.|+..+.......+. --+.-.+|..+.+|.-. ..++.|+|+++.+
T Consensus 24 ~i~f~~~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~rrpi~-----AdsAIMnP~~~iiALra-g~~lQiFnl~~k~ 97 (1630)
T 1xi4_A 24 NIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKS 97 (1630)
T ss_pred cccccceeeecCceEEEEecCCCCceEEEEECCCCCCccccccc-----chhhccCCCcceEEEec-CCeEEEeehHHhh
Confidence 344445556667777764 2347899998876543222222 12345788888777764 6789999999988
Q ss_pred eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecC----CCCEEEEEeecCCCEEEEEe----
Q 019847 92 LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH----SGEVCGLKWSNEGNLLASGG---- 163 (335)
Q Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~---- 163 (335)
.++.+.- ..+|.--.|.. .+.|+-.+ +..|..|++.....+.+.+..| ...|..-..+++.++++..+
T Consensus 98 klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~ 173 (1630)
T 1xi4_A 98 KMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ 173 (1630)
T ss_pred hhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccC
Confidence 8877764 45677778874 44444433 4679999997544444444444 45677777888888887544
Q ss_pred ---CCCeEEEEEccCCCcccceeeccCCCCCeeEEEec--CCCCcEEEEec-CCCCCeEEEEECCCC---ceEE-----E
Q 019847 164 ---DDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWS--PHQVNVLATGG-GREDGCIKIWNVQKG---TCIH-----G 229 (335)
Q Consensus 164 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~-g~~d~~i~i~d~~~~---~~~~-----~ 229 (335)
-.|.+.+|..+.. .-+.+.+|.+....+... +....+++.+. ....+.++|.++... .... .
T Consensus 174 ~~~v~G~mQLyS~er~----~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~ 249 (1630)
T 1xi4_A 174 QNRVVGAMQLYSVDRK----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD 249 (1630)
T ss_pred CCcccceeeeeecccc----cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcccccc
Confidence 3478889987653 344555665554444332 22233544432 012368888887542 1100 0
Q ss_pred --eec---CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCc
Q 019847 230 --IDA---KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADET 304 (335)
Q Consensus 230 --~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 304 (335)
++. ..-..++..++....+..- +.-|.+++||+.++..+..-+-....|...+-++...=++.....|.
T Consensus 250 ~~~~~~~~~Dfpv~~~vs~k~g~iy~i------tk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~ 323 (1630)
T 1xi4_A 250 VFFPPEAQNDFPVAMQISEKHDVVFLI------TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQ 323 (1630)
T ss_pred ccCCcccccCcceEEEeccccCEEEEE------ecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCce
Confidence 111 1124556666666655544 66899999999999998776655555554444433333444556677
Q ss_pred EEEEecCCCCC
Q 019847 305 IRFWEAFGPSG 315 (335)
Q Consensus 305 v~iw~~~~~~~ 315 (335)
|.--.+.....
T Consensus 324 vl~v~v~~~~i 334 (1630)
T 1xi4_A 324 VLSVCVEEENI 334 (1630)
T ss_pred EEEEEEccchh
Confidence 66666555443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00045 Score=56.46 Aligned_cols=184 Identities=10% Similarity=0.029 Sum_probs=109.6
Q ss_pred CceEEEEcCCCCEEEEE------------ECCCcEEEEeCCCce-eEeeec--c-----cccceeEeeecCC-CC--CEE
Q 019847 60 YPTSVSWSHDAKTLAVG------------YMDSKLQLWDAETSK-LVRNLE--G-----HHRRVATSSWNHW-NG--HIL 116 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~------------~~dg~i~iw~~~~~~-~~~~~~--~-----~~~~v~~~~~~~~-~~--~~l 116 (335)
..-.+...|+|..++++ ..+|.|.++|.++.. ....+. + .......+.+.+. ++ .++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 45677788877544443 168999999987421 112222 1 2235666666441 23 244
Q ss_pred EEeeC--CCcEEEEecccCCeeeE---Eeec-CCCCEEEEEeecCCCEEEEEe-----------------CCCeEEEEEc
Q 019847 117 TSGSK--DKSIINHDVRVSNNVTS---CIKA-HSGEVCGLKWSNEGNLLASGG-----------------DDNVVRIWER 173 (335)
Q Consensus 117 ~~~~~--dg~i~~~d~~~~~~~~~---~~~~-~~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~iwd~ 173 (335)
++-.. +.+|.+|++........ .+.+ .-...+.+.+.++|++.++.. ..|.|..+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 46788888765433222 2222 124578999999998777654 1245555553
Q ss_pred cCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCC-Cce--EEEeecCCcEeEEEeCC-CCceee
Q 019847 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK-GTC--IHGIDAKAQICGLEWNR-HHKEIL 249 (335)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~-~~~~~~ 249 (335)
. . .......-...+.++|+||++.++++.+ ..+.|..|++.. ++. ...+......-.+++++ +|...+
T Consensus 211 ~---~---~~~~~~~l~~pNGia~spDg~~lYvadt--~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 211 N---D---VRVVAEGFDFANGINISPDGKYVYIAEL--LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWV 282 (355)
T ss_dssp T---C---CEEEEEEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEE
T ss_pred C---e---EEEeecCCcccCcceECCCCCEEEEEeC--CCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEE
Confidence 2 1 2222222344689999999998888876 788999999863 332 22344456677888998 588766
Q ss_pred ee
Q 019847 250 SG 251 (335)
Q Consensus 250 ~~ 251 (335)
++
T Consensus 283 a~ 284 (355)
T 3sre_A 283 GC 284 (355)
T ss_dssp EE
T ss_pred Ee
Confidence 44
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0022 Score=52.71 Aligned_cols=229 Identities=14% Similarity=0.148 Sum_probs=122.5
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCce-eEeeec---ccccceeEeeecCC---CCCEEEEeeC---C----Cc
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK-LVRNLE---GHHRRVATSSWNHW---NGHILTSGSK---D----KS 124 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~~l~~~~~---d----g~ 124 (335)
.....++|.|+|+ |+++..+|.|++++ .+++ .+..+. ........++++|. ++.+.++-.. + ..
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4578999999997 55556679999997 3454 222221 12356889999983 2444444332 3 56
Q ss_pred EEEEecccCC------e-eeEEeec-CCCCEEEEEeecCCCEEEEEeC-------------CCeEEEEEccCCCc-----
Q 019847 125 IINHDVRVSN------N-VTSCIKA-HSGEVCGLKWSNEGNLLASGGD-------------DNVVRIWERSKMSS----- 178 (335)
Q Consensus 125 i~~~d~~~~~------~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~~----- 178 (335)
|..|+..... + +...+.. .......++|.|+|.++++.+. .|.|.-++....-.
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 7777765431 1 1111221 1112467999999987776432 24566555432100
Q ss_pred -ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC--eEEEEECCCCc------------------eEEEe-ecCCcE
Q 019847 179 -SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG--CIKIWNVQKGT------------------CIHGI-DAKAQI 236 (335)
Q Consensus 179 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~------------------~~~~~-~~~~~~ 236 (335)
...+.. .++. ....++|+|+...++++-.+ .++ .|.+.. .+. ++..+ ..+...
T Consensus 187 ~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g-~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap 261 (354)
T 3a9g_A 187 PNSPIWS-YGHR-NPQGIDWHRASGVMVATEHG-PVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP 261 (354)
T ss_dssp TTCCEEE-ECCS-CCCEEEECTTTCCEEEEECC-SSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred CCCcEEE-EccC-CcceEEEeCCCCCEEEEecC-CCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence 001111 2232 34679999944456666432 221 233332 221 12222 223346
Q ss_pred eEEEeC-------CCCceeeeeeeeeeecCCCeEEEEECCCC-cee--ecc-cCCCCceeEeEEcCCCCEEEEEe
Q 019847 237 CGLEWN-------RHHKEILSGHGFSASGDGNKLCLWKYPNM-TKV--GEL-QSSNSRILDLSQSPDGLTVATAG 300 (335)
Q Consensus 237 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~--~~~-~~~~~~i~~~~~~~~~~~l~~~~ 300 (335)
..+++. .+|.++++. ...+.|...++... +.. ..+ ......+..+++.|||.++++..
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~------~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIAC------LRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEE------TTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cceEEECCCCCcccCCcEEEEE------cCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 667773 344444332 45678888887653 221 122 22245789999999997766654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0014 Score=52.52 Aligned_cols=232 Identities=14% Similarity=0.120 Sum_probs=112.8
Q ss_pred CCCEEEEEE-CC-----CcEEEEeCCCceeEee--ecccccceeEeeecCCCCCEEEEeeCC-----CcEEEEecccCC-
Q 019847 69 DAKTLAVGY-MD-----SKLQLWDAETSKLVRN--LEGHHRRVATSSWNHWNGHILTSGSKD-----KSIINHDVRVSN- 134 (335)
Q Consensus 69 ~~~~l~~~~-~d-----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~- 134 (335)
++..++.|+ .+ ..+.+||..+.+.... +.........+.. ++.+++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL---HDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE---CCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 445566665 32 3688999887754332 2111111122222 67788888765 468899987665
Q ss_pred --eeeE-EeecCCCCEEEEEeecCCCEEEEEeCC-----CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEE
Q 019847 135 --NVTS-CIKAHSGEVCGLKWSNEGNLLASGGDD-----NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLA 206 (335)
Q Consensus 135 --~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 206 (335)
.... .+.........+. .++++++.|+.+ ..+.+||+.+.. ...+............+.+ ++ .+++
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~-~iyv 164 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQ-WSMLGDMQTAREGAGLVVA--SG-VIYC 164 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE-EEEEEECSSCCBSCEEEEE--TT-EEEE
T ss_pred CeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCe-EEECCCCCCCcccceEEEE--CC-EEEE
Confidence 2111 1111111112222 256777777654 368888876532 2333332222222222222 33 5777
Q ss_pred EecCC---CCCeEEEEECCCCceEEEeecCCc--EeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee--ecccC
Q 019847 207 TGGGR---EDGCIKIWNVQKGTCIHGIDAKAQ--ICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV--GELQS 279 (335)
Q Consensus 207 ~~~g~---~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~~~ 279 (335)
.|+.. .-..+.+||+.+.+-...-..+.+ -.++.. -+++.++.|.. ........+.+||..+.+-. ..+..
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~-~~~~~~~~v~~yd~~~~~W~~~~~~p~ 242 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGF-DGTAHLSSVEAYNIRTDSWTTVTSMTT 242 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCB-CSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCC-CCCcccceEEEEeCCCCcEEECCCCCC
Confidence 76411 124688999887754433221111 111222 24444444421 00011357899998875432 22222
Q ss_pred CCCceeEeEEcCCCCEEEEEeCC-----CcEEEEecCCC
Q 019847 280 SNSRILDLSQSPDGLTVATAGAD-----ETIRFWEAFGP 313 (335)
Q Consensus 280 ~~~~i~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~~ 313 (335)
.......+. -++++++.|+.+ ..+.+||+...
T Consensus 243 ~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 243 PRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp CCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred cccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 111122222 266777778765 34677777654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0025 Score=52.39 Aligned_cols=224 Identities=7% Similarity=0.049 Sum_probs=118.4
Q ss_pred ceeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeec---CCCCCceEEEEcCC---CCEEEEEEC-C-----CcEEEE
Q 019847 19 SKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVP---GEDDYPTSVSWSHD---AKTLAVGYM-D-----SKLQLW 85 (335)
Q Consensus 19 ~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----g~i~iw 85 (335)
...++|.++ +++++..++.|++++ +++......++ ........++++|+ +..|.++.. . +.|..+
T Consensus 33 P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~ 110 (352)
T 2ism_A 33 PWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL 110 (352)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred ceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence 456888774 677777789999988 45543333222 22456799999998 555555443 2 578888
Q ss_pred eCCCce-----e-Eeeec---ccccceeEeeecCCCCCEEEEeeCC-------------CcEEEEecccC----------
Q 019847 86 DAETSK-----L-VRNLE---GHHRRVATSSWNHWNGHILTSGSKD-------------KSIINHDVRVS---------- 133 (335)
Q Consensus 86 ~~~~~~-----~-~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~d-------------g~i~~~d~~~~---------- 133 (335)
+...++ . +..+. ........++|.| ++.+.++.+.. |.|.-++....
T Consensus 111 ~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~ 189 (352)
T 2ism_A 111 RHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGR 189 (352)
T ss_dssp EECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTC
T ss_pred EeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCC
Confidence 876431 1 11122 1112346899999 88777764422 45555555420
Q ss_pred --CeeeEEeecCCCCEEEEEeec-CCCEEEEEeCCCeE------EEEEccCCCc---------------ccceeeccCCC
Q 019847 134 --NNVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDNVV------RIWERSKMSS---------------SKSLHRFTDHC 189 (335)
Q Consensus 134 --~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i------~iwd~~~~~~---------------~~~~~~~~~~~ 189 (335)
........++ .....++|+| +++++++-.....+ .+.-+..+.. ..++..+. +.
T Consensus 190 ~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~ 267 (352)
T 2ism_A 190 RGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-QG 267 (352)
T ss_dssp TTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TC
T ss_pred CCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-CC
Confidence 0111111222 2356789999 66655553322221 1222222210 11222222 22
Q ss_pred CCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce-------EEEeecCCcEeEEEeCCCCceeeee
Q 019847 190 GGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC-------IHGIDAKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 190 ~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (335)
.....++| .++ .++++.. ..+.|...++..... ...+.....+..+++.|+|...++.
T Consensus 268 ~ap~G~~~-~~G-~l~v~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 268 FPPGNLAF-FRG-DLYVAGL--RGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp CCEEEEEE-ETT-EEEEEET--TTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred CCCcceEE-ECC-EEEEEEC--CCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 34566777 344 4555543 567788777754321 1112233567888888888655543
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0011 Score=54.91 Aligned_cols=146 Identities=10% Similarity=0.079 Sum_probs=99.2
Q ss_pred cCCceEEEecCCeEEEEEecCCceeeEEeecC--CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee----------
Q 019847 25 GRNNVLAVALGPVLFLWKWENGKVKKLLQVPG--EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL---------- 92 (335)
Q Consensus 25 ~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---------- 92 (335)
.++.-+....++.||.-++..+..-+.+..+. .-..|..+..+|+|++||..+ +..|.|-.+..+..
T Consensus 30 ~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 30 QNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred cCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 34444555567889988887554445555553 233688999999999999986 55899998873321
Q ss_pred --Eeeecc------cccceeEeeecCC--CCCEEEEeeCCCcEEEEecccCCeeeEEee---------cCCCCEEEEEee
Q 019847 93 --VRNLEG------HHRRVATSSWNHW--NGHILTSGSKDKSIINHDVRVSNNVTSCIK---------AHSGEVCGLKWS 153 (335)
Q Consensus 93 --~~~~~~------~~~~v~~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---------~~~~~i~~~~~~ 153 (335)
.+.+.- ...+|..+.|+|. .+..|++-..|+.|++||+.........+. .....|.+++|.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 112221 2467999999994 345899999999999999985221111221 223678899999
Q ss_pred cCCCEEEEEe--CCCeEEEE
Q 019847 154 NEGNLLASGG--DDNVVRIW 171 (335)
Q Consensus 154 ~~~~~l~~~~--~dg~i~iw 171 (335)
+++-.|...+ .+|.|+-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 9887677655 78888754
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0033 Score=50.50 Aligned_cols=224 Identities=10% Similarity=0.044 Sum_probs=111.9
Q ss_pred CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC----CcEEEEeCCCceeEee--ecccccceeEeee
Q 019847 35 GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD----SKLQLWDAETSKLVRN--LEGHHRRVATSSW 108 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~ 108 (335)
...+.+||..+++......++.....-..+. -+++.++.|+.+ ..+.+||..+.+-... +.........+.+
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 100 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA 100 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE
T ss_pred CceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE
Confidence 4589999999888765544433222223333 366677777754 6788999988754332 2211112222222
Q ss_pred cCCCCCEEEEeeCC------CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC---------CCeEEEEEc
Q 019847 109 NHWNGHILTSGSKD------KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD---------DNVVRIWER 173 (335)
Q Consensus 109 ~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~iwd~ 173 (335)
++.+++.|+.+ ..+.+||..+..............-.+++. -++++++.|+. -..+.+||+
T Consensus 101 ---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~ 176 (306)
T 3ii7_A 101 ---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDP 176 (306)
T ss_dssp ---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEET
T ss_pred ---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCC
Confidence 67788888765 468889987654311110011111111222 25667777653 345888997
Q ss_pred cCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC-----CeEEEEECCCCceEEEeecCC--cEeEEEeCCCCc
Q 019847 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED-----GCIKIWNVQKGTCIHGIDAKA--QICGLEWNRHHK 246 (335)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d-----~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~ 246 (335)
.+.. ...+..+.........+.+ ++ .+++.|+ .+ ..+.+||+.+.+-...-..+. .-..+... +++
T Consensus 177 ~~~~-W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG--~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~ 249 (306)
T 3ii7_A 177 ATET-WTELCPMIEARKNHGLVFV--KD-KIFAVGG--QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-GSI 249 (306)
T ss_dssp TTTE-EEEECCCSSCCBSCEEEEE--TT-EEEEECC--EETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-TTE
T ss_pred CCCe-EEECCCccchhhcceEEEE--CC-EEEEEeC--CCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-CCE
Confidence 7532 2333222211111222222 33 5777764 22 468899998765432211111 11112211 444
Q ss_pred eeeeeeeeeeecCCCeEEEEECCCCc
Q 019847 247 EILSGHGFSASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~i~d~~~~~ 272 (335)
.++.|.. .....-..+.+||..+.+
T Consensus 250 i~v~GG~-~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 250 VYVLAGF-QGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEEECB-CSSSBCCEEEEEETTTTE
T ss_pred EEEEeCc-CCCeeeeeEEEEcCCCCe
Confidence 4444421 111123568888887643
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0043 Score=51.01 Aligned_cols=240 Identities=13% Similarity=0.143 Sum_probs=122.6
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee---e----cccccceeEeeecCC---CCCEEEEeeC-------C
Q 019847 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN---L----EGHHRRVATSSWNHW---NGHILTSGSK-------D 122 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---~----~~~~~~v~~~~~~~~---~~~~l~~~~~-------d 122 (335)
....++|.|+|+.|+++...|.|++++.. ++.... + .........++++|. ++.+.++-.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 46899999999845555678999999853 332211 1 112345688999983 3444444332 2
Q ss_pred CcEEEEecccCC----eeeEEeecC------CCCEEEEEeecCCCEEEEEeC-------------CCeEEEEEccCCCc-
Q 019847 123 KSIINHDVRVSN----NVTSCIKAH------SGEVCGLKWSNEGNLLASGGD-------------DNVVRIWERSKMSS- 178 (335)
Q Consensus 123 g~i~~~d~~~~~----~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~~- 178 (335)
..|..+++.... .....+... ...-..++|.|||.++++.+. .|.|.-++....-.
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 356666664321 111111111 112357999999976665433 24676666542100
Q ss_pred ----------ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce----------------------
Q 019847 179 ----------SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC---------------------- 226 (335)
Q Consensus 179 ----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---------------------- 226 (335)
...+.. .++ .....++|+|....++++-.+ .++.=.|.-+..+..
T Consensus 178 ~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g-~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHG-PRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp TCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEEC-SBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecC-CCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 011111 122 236789999944456665432 221112222222111
Q ss_pred ---------EEEeecCCcEeEEEeCC-------CCceeeeeeeeeeecCCCeEEEEECCCCceeec---ccCCCCceeEe
Q 019847 227 ---------IHGIDAKAQICGLEWNR-------HHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE---LQSSNSRILDL 287 (335)
Q Consensus 227 ---------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~---~~~~~~~i~~~ 287 (335)
+..+..+.....+.+.. ++.++++. -..+.|...++..++.... +......+..+
T Consensus 255 ~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v 328 (353)
T 2g8s_A 255 EIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGA------LKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDV 328 (353)
T ss_dssp SSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEE------TTTTEEEEEEEETTEEEEEEEESGGGCCCEEEE
T ss_pred CCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEE------ccCCEEEEEEeCCCeEeeeEEcccCCCCceeEE
Confidence 11122223445556543 23333332 4567777777765543322 22223478999
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEecC
Q 019847 288 SQSPDGLTVATAG-ADETIRFWEAF 311 (335)
Q Consensus 288 ~~~~~~~~l~~~~-~dg~v~iw~~~ 311 (335)
++.|||.++++.. .+| +||.+.
T Consensus 329 ~~~pdG~lyv~td~~~g--~I~ri~ 351 (353)
T 2g8s_A 329 RTGPDGYLYVLTDESSG--ELLKVS 351 (353)
T ss_dssp EECTTSCEEEEECSTTE--EEEEEE
T ss_pred EECCCCcEEEEEeCCCC--EEEEEe
Confidence 9999998666543 344 555553
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0036 Score=50.06 Aligned_cols=182 Identities=16% Similarity=0.175 Sum_probs=94.6
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC-----CcEEEEeCCCce---eE--eeecccccceeE
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD-----SKLQLWDAETSK---LV--RNLEGHHRRVAT 105 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~---~~--~~~~~~~~~v~~ 105 (335)
..+.+||..+.+......++........+. .+++.++.|+.+ ..+.+||..+.+ .. ..+.........
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 478999998887655444333222222222 366777777754 468999988765 32 222211122222
Q ss_pred eeecCCCCCEEEEeeCCC-----cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC-----CeEEEEEccC
Q 019847 106 SSWNHWNGHILTSGSKDK-----SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD-----NVVRIWERSK 175 (335)
Q Consensus 106 ~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 175 (335)
+.. ++.+++.|+.++ .+.+||+.+..............-.+++. .++++++.|+.+ ..+.+||+.+
T Consensus 109 ~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~ 184 (301)
T 2vpj_A 109 TTL---GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHT 184 (301)
T ss_dssp EEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred EEE---CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCC
Confidence 222 677888887543 57888887554321111111111111222 266777777654 3588899765
Q ss_pred CCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCC---CCeEEEEECCCCceE
Q 019847 176 MSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE---DGCIKIWNVQKGTCI 227 (335)
Q Consensus 176 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~~ 227 (335)
. ....+..+.........+.+ + ..+++.|+... ...+.+||+++.+-.
T Consensus 185 ~-~W~~~~~~p~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 185 G-HWTNVTPMATKRSGAGVALL--N-DHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp T-EEEEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred C-cEEeCCCCCcccccceEEEE--C-CEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 3 22333222211112222222 2 35777764111 246899999877544
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0046 Score=49.51 Aligned_cols=180 Identities=13% Similarity=0.212 Sum_probs=92.6
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC-----CcEEEEeCCCceeEee--ecccccceeEeee
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD-----SKLQLWDAETSKLVRN--LEGHHRRVATSSW 108 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~ 108 (335)
..+..||..+.+......++.....-..+.+ +++.++.|+.+ ..+.+||..+.+-... +.........+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE
Confidence 4688999988876555444332222222222 66777777754 3588999887654332 2211112222222
Q ss_pred cCCCCCEEEEeeCCC-----cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC-------CeEEEEEccCC
Q 019847 109 NHWNGHILTSGSKDK-----SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD-------NVVRIWERSKM 176 (335)
Q Consensus 109 ~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~ 176 (335)
++.+++.|+.++ .+.+||+.+..............-.+++. -++++++.|+.+ ..+.+||+.+.
T Consensus 108 ---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 183 (302)
T 2xn4_A 108 ---NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTN 183 (302)
T ss_dssp ---TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTT
T ss_pred ---CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCC
Confidence 677888887654 57788877544211110011111112222 256677776543 35888997653
Q ss_pred CcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC-----CeEEEEECCCCceE
Q 019847 177 SSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED-----GCIKIWNVQKGTCI 227 (335)
Q Consensus 177 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d-----~~i~i~d~~~~~~~ 227 (335)
. ...+..+.........+.+ + ..+++.|+ .+ ..+.+||+++.+-.
T Consensus 184 ~-W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG--~~~~~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 184 E-WTYIAEMSTRRSGAGVGVL--N-NLLYAVGG--HDGPLVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp E-EEEECCCSSCCBSCEEEEE--T-TEEEEECC--BSSSSBCCCEEEEETTTTEEE
T ss_pred c-EEECCCCccccccccEEEE--C-CEEEEECC--CCCCcccceEEEEeCCCCCEe
Confidence 2 2223222211112222222 2 35777764 32 46899999876543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0049 Score=49.31 Aligned_cols=231 Identities=11% Similarity=0.097 Sum_probs=109.9
Q ss_pred CCEEEEEECC----CcEEEEeCCCceeEee--ecccccceeEeeecCCCCCEEEEeeCCC-----cEEEEecccCCeeeE
Q 019847 70 AKTLAVGYMD----SKLQLWDAETSKLVRN--LEGHHRRVATSSWNHWNGHILTSGSKDK-----SIINHDVRVSNNVTS 138 (335)
Q Consensus 70 ~~~l~~~~~d----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~ 138 (335)
+..++.|+.+ ..+..||+.+.+.... +......-..+.. ++.+++.|+.++ .+.+||..+......
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM---AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE---CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 3455555533 3588889887654322 1111111112222 677888887553 578888875542111
Q ss_pred E-eecCCCCEEEEEeecCCCEEEEEeCCC-----eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCC
Q 019847 139 C-IKAHSGEVCGLKWSNEGNLLASGGDDN-----VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE 212 (335)
Q Consensus 139 ~-~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 212 (335)
. +.........+. -++++++.|+.++ .+.+||+.+.. ...+..+.........+.+ ++ .+++.|+...
T Consensus 93 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~ 166 (302)
T 2xn4_A 93 ANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNE-WFHVAPMNTRRSSVGVGVV--GG-LLYAVGGYDV 166 (302)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TT-EEEEECCEET
T ss_pred CCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCe-EeecCCCCCcccCceEEEE--CC-EEEEEeCCCC
Confidence 1 111111111222 2567777777653 57788876532 2223222221122222222 33 5777664111
Q ss_pred -----CCeEEEEECCCCceEEEeecCC--cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee--ecccCCCCc
Q 019847 213 -----DGCIKIWNVQKGTCIHGIDAKA--QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV--GELQSSNSR 283 (335)
Q Consensus 213 -----d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~~~~~~~ 283 (335)
-..+.+||+.+.+-...-..+. .-.++.. -+++.++.|.. ........+.+||..+.+-. ..+......
T Consensus 167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~ 244 (302)
T 2xn4_A 167 ASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGH-DGPLVRKSVEVYDPTTNAWRQVADMNMCRRN 244 (302)
T ss_dssp TTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCB-SSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred CCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCC-CCCcccceEEEEeCCCCCEeeCCCCCCcccc
Confidence 2458899998775433222111 1112222 24455444411 00011357889998775432 222211111
Q ss_pred eeEeEEcCCCCEEEEEeCCC-----cEEEEecCCC
Q 019847 284 ILDLSQSPDGLTVATAGADE-----TIRFWEAFGP 313 (335)
Q Consensus 284 i~~~~~~~~~~~l~~~~~dg-----~v~iw~~~~~ 313 (335)
...+ .-++++++.|+.++ .+.+||+...
T Consensus 245 ~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 245 AGVC--AVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CEEE--EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CeEE--EECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 1122 23677778887654 4888888764
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0033 Score=50.54 Aligned_cols=179 Identities=18% Similarity=0.170 Sum_probs=93.0
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC----C-----CcEEEEeCCCceeEee--eccccccee
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM----D-----SKLQLWDAETSKLVRN--LEGHHRRVA 104 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-----g~i~iw~~~~~~~~~~--~~~~~~~v~ 104 (335)
..+.+||..+.+......++.....-..+. .+++.++.|+. + ..+.+||..+.+.... +........
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 116 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 116 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence 478999998887665543332222222222 26667777765 2 4688999887654332 221111222
Q ss_pred EeeecCCCCCEEEEeeCC-----CcEEEEecccCCeeeE-EeecCCCCEEEEEeecCCCEEEEEeCC-----CeEEEEEc
Q 019847 105 TSSWNHWNGHILTSGSKD-----KSIINHDVRVSNNVTS-CIKAHSGEVCGLKWSNEGNLLASGGDD-----NVVRIWER 173 (335)
Q Consensus 105 ~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~ 173 (335)
.+.+ ++.+++.|+.+ ..+.+||+.+...... .+......-..+.+ ++++++.|+.+ ..+.+||+
T Consensus 117 ~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~ 191 (308)
T 1zgk_A 117 VGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYP 191 (308)
T ss_dssp EEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEET
T ss_pred EEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeC
Confidence 2222 67778877754 3578888875442111 11111111122222 56777777654 45888887
Q ss_pred cCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC-----CeEEEEECCCCceE
Q 019847 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED-----GCIKIWNVQKGTCI 227 (335)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d-----~~i~i~d~~~~~~~ 227 (335)
.+.. ...+..+.........+.+ + ..+++.|+ .+ ..+.+||+.+.+-.
T Consensus 192 ~~~~-W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG--~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 192 ERNE-WRMITAMNTIRSGAGVCVL--H-NCIYAAGG--YDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp TTTE-EEECCCCSSCCBSCEEEEE--T-TEEEEECC--BCSSSBCCCEEEEETTTTEEE
T ss_pred CCCe-EeeCCCCCCccccceEEEE--C-CEEEEEeC--CCCCCccceEEEEeCCCCcEE
Confidence 6532 2222222211122222333 3 35777764 32 56899999876543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0072 Score=49.66 Aligned_cols=92 Identities=20% Similarity=0.262 Sum_probs=49.5
Q ss_pred CCceEEEe--cCCeEEEEEecC--CceeeEEeec-CCCCCceEEEEcCCCCEEEEEEC-C---------CcEEEEeCCCc
Q 019847 26 RNNVLAVA--LGPVLFLWKWEN--GKVKKLLQVP-GEDDYPTSVSWSHDAKTLAVGYM-D---------SKLQLWDAETS 90 (335)
Q Consensus 26 ~~~~~~~~--~~~~i~vw~~~~--~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d---------g~i~iw~~~~~ 90 (335)
++.+++.+ ....+.+||..+ .+......++ .....-..+.+ +++.++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 55555544 345789999874 5554443333 11222222222 5667777765 2 46899999877
Q ss_pred eeEeeeccc---ccceeEeeecCCCCCEEEEeeCC
Q 019847 91 KLVRNLEGH---HRRVATSSWNHWNGHILTSGSKD 122 (335)
Q Consensus 91 ~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~d 122 (335)
+-...-... .....++. . ++.+++.|+.+
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~ 128 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV--H-NGKAYVTGGVN 128 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE--E-TTEEEEEECCC
T ss_pred cEEECCCCCCcccccceEEE--E-CCEEEEEeCcC
Confidence 543322111 11122222 2 77888888865
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0089 Score=47.90 Aligned_cols=230 Identities=11% Similarity=0.079 Sum_probs=112.8
Q ss_pred CEEEEEEC--CCcEEEEeCCCceeEee--ecccccceeEeeecCCCCCEEEEeeCC----CcEEEEecccCCeeeEE-ee
Q 019847 71 KTLAVGYM--DSKLQLWDAETSKLVRN--LEGHHRRVATSSWNHWNGHILTSGSKD----KSIINHDVRVSNNVTSC-IK 141 (335)
Q Consensus 71 ~~l~~~~~--dg~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~-~~ 141 (335)
.+++.|+. ...+.+||..+.+-... +.........+.. ++.+++.|+.+ ..+.+||+.+....... +.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 34555654 35789999988754332 2211112222222 67788888765 56888898765432111 11
Q ss_pred cCCCCEEEEEeecCCCEEEEEeCC------CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCC---
Q 019847 142 AHSGEVCGLKWSNEGNLLASGGDD------NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE--- 212 (335)
Q Consensus 142 ~~~~~i~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~--- 212 (335)
........+. -++++++.|+.+ ..+.+||+.+.. ...+..+.........+.+ ++ .+++.|+...
T Consensus 90 ~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 90 TPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTES-WHTKPSMLTQRCSHGMVEA--NG-LIYVCGGSLGNNV 163 (306)
T ss_dssp SCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TT-EEEEECCEESCTT
T ss_pred ccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCc-eEeCCCCcCCcceeEEEEE--CC-EEEEECCCCCCCC
Confidence 1111112222 266777777765 458889977532 2222222211111222222 33 5666664111
Q ss_pred ----CCeEEEEECCCCceEEEeecCC--cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce--eecccCCCCce
Q 019847 213 ----DGCIKIWNVQKGTCIHGIDAKA--QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK--VGELQSSNSRI 284 (335)
Q Consensus 213 ----d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~i 284 (335)
-..+.+||+.+.+-...-.... .-.++... +++.++.|.. .....-..+.+||..+.+- +..+.......
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 241 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQ-NGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTV 241 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCE-ETTEEBCCEEEEETTTTEEEECCCCSCCBSCC
T ss_pred cccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCC-CCCCCCceEEEeeCCCCcEEECCCCCCCccce
Confidence 3558899998875433222111 11122222 4454444421 0001125688999877543 22222222222
Q ss_pred eEeEEcCCCCEEEEEeCC-----CcEEEEecCCC
Q 019847 285 LDLSQSPDGLTVATAGAD-----ETIRFWEAFGP 313 (335)
Q Consensus 285 ~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~~ 313 (335)
..+.+ ++++++.|+.+ ..+.+||+...
T Consensus 242 ~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 242 KCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred eEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 22333 67788888754 45788887764
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.78 E-value=0.03 Score=53.52 Aligned_cols=285 Identities=8% Similarity=0.034 Sum_probs=158.1
Q ss_pred cccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCC------CCEEEEEEC-CCcEEEEeCC
Q 019847 16 DYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHD------AKTLAVGYM-DSKLQLWDAE 88 (335)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~-dg~i~iw~~~ 88 (335)
...+...+.++..++.+ .++.+.+++++.++.....+. .-...|.|+++.|. ++++++|.. |++++|+++.
T Consensus 513 ~~~I~~As~n~~~vvva-~g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~ 590 (1158)
T 3ei3_A 513 AKNISVASCNSSQVVVA-VGRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP 590 (1158)
T ss_dssp CCCCCEEEECSSEEEEE-ETTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEEeCCCEEEEE-ECCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence 34555666666655555 478898899887765443332 23567999999863 469999996 9999999998
Q ss_pred CceeEeeecc-cccceeEeeecC-CCCCEEEEeeCCCcEEEEecccCC-eee---EEeecCCCCEEEEEeecCCCEEEEE
Q 019847 89 TSKLVRNLEG-HHRRVATSSWNH-WNGHILTSGSKDKSIINHDVRVSN-NVT---SCIKAHSGEVCGLKWSNEGNLLASG 162 (335)
Q Consensus 89 ~~~~~~~~~~-~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~-~~~---~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (335)
+.+.+....- ......++.... ....+|..|-.||.+.-+.+.... .+. ....+ ..++.-..+...+..-+.+
T Consensus 591 ~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a 669 (1158)
T 3ei3_A 591 SFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFA 669 (1158)
T ss_dssp TCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEE
T ss_pred CCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEE
Confidence 7665543221 112333333321 144678899999998766654311 111 11222 3344444444333333333
Q ss_pred eCCCeEEEEEccCCCcccceeeccCCCCCee-EEEecCCC--CcEEEEecCCCCCeEEEEECCCC--ceEEEeecCCcEe
Q 019847 163 GDDNVVRIWERSKMSSSKSLHRFTDHCGGVK-ALAWSPHQ--VNVLATGGGREDGCIKIWNVQKG--TCIHGIDAKAQIC 237 (335)
Q Consensus 163 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~--~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~~~~~~ 237 (335)
..+.-..++.-+. .-.+..+. ...+. ...|+... ..++++ .++.++|..+.+. -.+++++....+.
T Consensus 670 ~s~rp~liy~~~~---~l~~s~l~--~~~v~~~~~F~se~~~~g~v~~----~~~~LrI~~i~~~~~~~~~~ipL~~Tpr 740 (1158)
T 3ei3_A 670 CSDRPTVIYSSNH---KLVFSNVN--LKEVNYMCPLNSDGYPDSLALA----NNSTLTIGTIDEIQKLHIRTVPLYESPR 740 (1158)
T ss_dssp ESSSCEEEEESSS---SEEEEEBS--SSCCCEEEEECCSSSTTEEEEE----CSSCEEEEEECCSSSEEEEEEECSSEEE
T ss_pred ECCCCEEEEEcCC---ceEEeccC--hHHhceEeccCcccCCCcEEEE----cCCceEEEEecccCCeeEEEEeCCCCce
Confidence 3344444444221 11112111 12232 33343321 124443 3566998887543 3355666677888
Q ss_pred EEEeCCCCceeeeeeeee-eec------------------------------------------CCCeEEEEECCCCcee
Q 019847 238 GLEWNRHHKEILSGHGFS-ASG------------------------------------------DGNKLCLWKYPNMTKV 274 (335)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~-~~~------------------------------------------~~~~i~i~d~~~~~~~ 274 (335)
.++++|..+.++.+..-. ... ..+.|++.|..+.+.+
T Consensus 741 ri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i 820 (1158)
T 3ei3_A 741 KICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVL 820 (1158)
T ss_dssp EEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEE
T ss_pred EEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEE
Confidence 888888877655442100 000 1245788888888776
Q ss_pred ecccCC-CCceeEeE---EcCC-CCEEEEEe----------CCCcEEEEecCC
Q 019847 275 GELQSS-NSRILDLS---QSPD-GLTVATAG----------ADETIRFWEAFG 312 (335)
Q Consensus 275 ~~~~~~-~~~i~~~~---~~~~-~~~l~~~~----------~dg~v~iw~~~~ 312 (335)
..+.-. ...+.+++ |..+ ..+|++|+ ..|.|++|++.+
T Consensus 821 ~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~ 873 (1158)
T 3ei3_A 821 HAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD 873 (1158)
T ss_dssp EEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET
T ss_pred EEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC
Confidence 554422 23344444 4333 46888886 358899999873
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.012 Score=48.72 Aligned_cols=150 Identities=11% Similarity=0.136 Sum_probs=95.3
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCceeEeeeccc----ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe-----
Q 019847 65 SWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH----HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN----- 135 (335)
Q Consensus 65 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~----- 135 (335)
..+.+|..++++- ++.||.-++......+.++.. -..+..+..+| +|++|+..+ +..|.+..+..+..
T Consensus 27 ~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 27 FSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred EEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccc
Confidence 3445666666664 567888887754444444432 23678899999 999998876 45788888763210
Q ss_pred ------eeEEeec------CCCCEEEEEeec---CCCEEEEEeCCCeEEEEEccCCCcccce--------eeccCCCCCe
Q 019847 136 ------VTSCIKA------HSGEVCGLKWSN---EGNLLASGGDDNVVRIWERSKMSSSKSL--------HRFTDHCGGV 192 (335)
Q Consensus 136 ------~~~~~~~------~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~~v 192 (335)
..+.+.- ...+|..+.|+| .+..|++-..|+.|++||+..... .+. .........|
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-~P~~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-KPIVLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-CCEEESCCCSEEESCSSCCCE
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-CCcchhccccccCCCcccceE
Confidence 0111111 257899999999 467899999999999999986221 111 1112233568
Q ss_pred eEEEecCCCCcEEEEecCCCCCeEEEE
Q 019847 193 KALAWSPHQVNVLATGGGREDGCIKIW 219 (335)
Q Consensus 193 ~~~~~~~~~~~~~~~~~g~~d~~i~i~ 219 (335)
.+++|.+++-.|.+.. .+..|.|+-.
T Consensus 183 ~S~~Fg~~~lTLYvl~-~t~~GDIYAl 208 (452)
T 3pbp_A 183 TDLEFSKDGLTLYCLN-TTEGGDIFAF 208 (452)
T ss_dssp EEEEECTTSSCEEEEE-CTTSCEEEEE
T ss_pred EEEEEcCCCcEEEEEe-cCCCCCEEEE
Confidence 8899988765555533 1145666654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.013 Score=47.17 Aligned_cols=186 Identities=10% Similarity=0.085 Sum_probs=97.0
Q ss_pred eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC----C-------CcEEEEeCCCceeEee--
Q 019847 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM----D-------SKLQLWDAETSKLVRN-- 95 (335)
Q Consensus 29 ~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-------g~i~iw~~~~~~~~~~-- 95 (335)
++..+. ..+..||..+++... ..++.........+...+++.++.|+. + ..+..||..+.+-...
T Consensus 7 l~~~GG-~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE-EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET-TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC-CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 444443 789999999988654 444332233344444567888888873 1 1277889887754322
Q ss_pred ecccccceeEeeecCCCCCEEEEeeCC--------CcEEEEecccCCeeeE-EeecCCCCEEEEEeecCCCEEEEEeC-C
Q 019847 96 LEGHHRRVATSSWNHWNGHILTSGSKD--------KSIINHDVRVSNNVTS-CIKAHSGEVCGLKWSNEGNLLASGGD-D 165 (335)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~-d 165 (335)
+.........+.+ ++.+++.|+.+ ..+.+||+.+..-... .+...... .+++ ..++++++.|+. +
T Consensus 85 ~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~ 159 (315)
T 4asc_A 85 LPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVL-SHMDLVYVIGGKGS 159 (315)
T ss_dssp BSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCBCT
T ss_pred CCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEE-EECCEEEEEeCCCC
Confidence 1111111112222 66777777743 4588899876532111 11111111 1122 235677777775 2
Q ss_pred -----CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC-----eEEEEECCCCceE
Q 019847 166 -----NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG-----CIKIWNVQKGTCI 227 (335)
Q Consensus 166 -----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~-----~i~i~d~~~~~~~ 227 (335)
..+.+||+.+.. ...+..+.........+.+ ++ .+++.|+ .++ .+.+||+.+.+-.
T Consensus 160 ~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG--~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFE-WKELAPMQTARSLFGATVH--DG-RIIVAAG--VTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp TSCBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE--TT-EEEEEEE--ECSSSEEEEEEEEETTTTEEE
T ss_pred CCcccceEEEEeCCCCe-EEECCCCCCchhceEEEEE--CC-EEEEEec--cCCCCccceEEEEECCCCeEE
Confidence 368889977532 2222222211111222222 33 5777764 332 5888999877543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.018 Score=47.00 Aligned_cols=173 Identities=13% Similarity=0.078 Sum_probs=100.5
Q ss_pred CCCcEEEEecccCCeeeE--Eeec-----CCCCEEEEEeec--CCC--EEEEEeC--CCeEEEEEccCCCc-ccceeecc
Q 019847 121 KDKSIINHDVRVSNNVTS--CIKA-----HSGEVCGLKWSN--EGN--LLASGGD--DNVVRIWERSKMSS-SKSLHRFT 186 (335)
Q Consensus 121 ~dg~i~~~d~~~~~~~~~--~~~~-----~~~~i~~~~~~~--~~~--~l~~~~~--dg~i~iwd~~~~~~-~~~~~~~~ 186 (335)
.+|.|.++|+.+...... .+.+ .......+.+.+ ++. ++++-.. +..|.+|++..... ...+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999874321111 1222 123567777766 343 3444333 46788888765322 22233333
Q ss_pred CC-CCCeeEEEecCCCCcEEEEecC---------------CCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeee
Q 019847 187 DH-CGGVKALAWSPHQVNVLATGGG---------------REDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILS 250 (335)
Q Consensus 187 ~~-~~~v~~~~~~~~~~~~~~~~~g---------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (335)
+. -...+.+.+.++|. ++++... ...|.+..+|. ++.......-...+.++|+|+++.++.
T Consensus 161 g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEE
Confidence 32 23478999999985 4443210 01245666654 333333334456789999999998876
Q ss_pred eeeeeeecCCCeEEEEECCC-Cce--eecccCCCCceeEeEEcC-CCCEEEEEeCC
Q 019847 251 GHGFSASGDGNKLCLWKYPN-MTK--VGELQSSNSRILDLSQSP-DGLTVATAGAD 302 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d~~~-~~~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 302 (335)
+. +..+.|..|++.. ++. ...+ ...+..-.+++.+ +|++.+++..+
T Consensus 238 ad-----t~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 238 AE-----LLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EE-----GGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred Ee-----CCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 53 4578999999863 322 1223 2245567889999 59887766543
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.017 Score=46.30 Aligned_cols=180 Identities=11% Similarity=0.041 Sum_probs=93.0
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC-----CcEEEEeCCCceeEee--ecccccceeEeee
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD-----SKLQLWDAETSKLVRN--LEGHHRRVATSSW 108 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~ 108 (335)
..+.+||..+.+......++........+.+ +++.++.|+.+ ..+.+||..+.+-... +......-..+.+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 167 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 167 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence 4688999988876555444332222233333 67777777643 4688999887654332 2211112222222
Q ss_pred cCCCCCEEEEeeCC-----CcEEEEecccCCeeeEE-eecCCCCEEEEEeecCCCEEEEEeCC-----CeEEEEEccCCC
Q 019847 109 NHWNGHILTSGSKD-----KSIINHDVRVSNNVTSC-IKAHSGEVCGLKWSNEGNLLASGGDD-----NVVRIWERSKMS 177 (335)
Q Consensus 109 ~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 177 (335)
++.+++.|+.+ ..+..||+.+..-.... +.........+.+ ++++++.|+.+ ..+.+||+.+..
T Consensus 168 ---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 168 ---NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp ---TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ---CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 67788888765 45888998755421110 1111111122222 66777777654 468899987532
Q ss_pred cccceeeccCCCCCeeEEEecCCCCcEEEEecCC---CCCeEEEEECCCCce
Q 019847 178 SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGR---EDGCIKIWNVQKGTC 226 (335)
Q Consensus 178 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~---~d~~i~i~d~~~~~~ 226 (335)
...+..+.........+.+ + ..+++.|+.. .-..+.+||+++.+-
T Consensus 243 -W~~~~~~p~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 243 -WTFVAPMKHRRSALGITVH--Q-GRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp -EEECCCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred -EEECCCCCCCccceEEEEE--C-CEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 2223222211112222222 3 3577776411 124578888877654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.042 Score=49.64 Aligned_cols=187 Identities=14% Similarity=0.128 Sum_probs=99.7
Q ss_pred CeEEEEEecCCceeeEE-e-----ecCCCCCceEEEEcC-CCCEEEEEECC------CcEEEEeCCCceeEee--ecccc
Q 019847 36 PVLFLWKWENGKVKKLL-Q-----VPGEDDYPTSVSWSH-DAKTLAVGYMD------SKLQLWDAETSKLVRN--LEGHH 100 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~-~-----~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~iw~~~~~~~~~~--~~~~~ 100 (335)
+.+.+||..+++..... . ++..... .+++..+ +++.++.|+.+ ..+.+||..+.+-... +....
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R 490 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTR 490 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCC
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCc
Confidence 46899999988876554 2 1211122 2333333 77777887743 3588999887654332 22111
Q ss_pred cceeEeeecCCCCCEEEEeeCCC--cEEEEecccCCeeeEE----eecCCCCEEEEEeecC-CCEEEEEeC--C-----C
Q 019847 101 RRVATSSWNHWNGHILTSGSKDK--SIINHDVRVSNNVTSC----IKAHSGEVCGLKWSNE-GNLLASGGD--D-----N 166 (335)
Q Consensus 101 ~~v~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~----~~~~~~~i~~~~~~~~-~~~l~~~~~--d-----g 166 (335)
.. .+++... ++.+++.|+.++ .+.+||..+....... .........++.+..+ +++++.|+. + .
T Consensus 491 ~~-h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~ 568 (695)
T 2zwa_A 491 FR-HSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSD 568 (695)
T ss_dssp BS-CEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCC
T ss_pred cc-ceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeC
Confidence 11 2222223 778888888665 6899998765432111 1111122233455554 667777765 2 4
Q ss_pred eEEEEEccCCCc-----ccceeecc-CCCCCeeEEEecCCCCcEEEEecCC------CCCeEEEEECCCCceE
Q 019847 167 VVRIWERSKMSS-----SKSLHRFT-DHCGGVKALAWSPHQVNVLATGGGR------EDGCIKIWNVQKGTCI 227 (335)
Q Consensus 167 ~i~iwd~~~~~~-----~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~g~------~d~~i~i~d~~~~~~~ 227 (335)
.+.+||+.+..- ...+.... ....... ++...++ .+++.|+.. ....+.+||+.+.+-.
T Consensus 569 ~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~-~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 569 KAIIFKYDAENATEPITVIKKLQHPLFQRYGSQ-IKYITPR-KLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEEEEECTTCSSCCEEEEEEEECGGGCCBSCE-EEEEETT-EEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred cEEEEEccCCccccceEEEEcCCCCCCCcccce-EEEeCCC-EEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 688999886541 22222211 1111122 2233323 577776411 2356999999887654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.031 Score=45.90 Aligned_cols=202 Identities=12% Similarity=0.057 Sum_probs=105.9
Q ss_pred cceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEe---ecCCCCEEEEEeecC---CCEEEEEeC----C----C
Q 019847 101 RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI---KAHSGEVCGLKWSNE---GNLLASGGD----D----N 166 (335)
Q Consensus 101 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~~i~~~~~~~~---~~~l~~~~~----d----g 166 (335)
.....++|.| ++++++ +..+|.|++++.. +......+ .........|+++|+ +..|.++.. + .
T Consensus 29 ~~P~~ia~~p-dG~l~V-~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 29 EVPWSIAPLG-GGRYLV-TERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp SCEEEEEEEE-TTEEEE-EETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCeEEEEcC-CCeEEE-EeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 4577899999 777544 5666999998742 32112111 122356889999997 455554443 3 5
Q ss_pred eEEEEEccCCC----cccce-eecc-CCCCCeeEEEecCCCCcEEEEecC-----------CCCCeEEEEECCCC-----
Q 019847 167 VVRIWERSKMS----SSKSL-HRFT-DHCGGVKALAWSPHQVNVLATGGG-----------REDGCIKIWNVQKG----- 224 (335)
Q Consensus 167 ~i~iwd~~~~~----~~~~~-~~~~-~~~~~v~~~~~~~~~~~~~~~~~g-----------~~d~~i~i~d~~~~----- 224 (335)
.|..|+..... ..+.+ ..+. ........+.|.|+|. |+++.+. ...|.|.-++....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 67777765431 01111 1121 1112346799999995 5554320 01256666665421
Q ss_pred ---c-eEEEeecCCcEeEEEeCC-CCceeeeeeeeeeecCC--CeEEEEECCC----------------CceeecccCCC
Q 019847 225 ---T-CIHGIDAKAQICGLEWNR-HHKEILSGHGFSASGDG--NKLCLWKYPN----------------MTKVGELQSSN 281 (335)
Q Consensus 225 ---~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~i~i~d~~~----------------~~~~~~~~~~~ 281 (335)
. .+.. ........++|+| ++...++-. +.+ ..|.+..... ..++..+....
T Consensus 185 pf~~~~i~a-~G~rnp~Gla~d~~~g~l~v~d~-----g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ 258 (354)
T 3a9g_A 185 PFPNSPIWS-YGHRNPQGIDWHRASGVMVATEH-----GPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSET 258 (354)
T ss_dssp SSTTCCEEE-ECCSCCCEEEECTTTCCEEEEEC-----CSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred CCCCCcEEE-EccCCcceEEEeCCCCCEEEEec-----CCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCC
Confidence 0 1111 1233466899999 555444321 111 2233332110 01222221112
Q ss_pred CceeEeEEc-------CCCCEEEEEeCCCcEEEEecCC
Q 019847 282 SRILDLSQS-------PDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 282 ~~i~~~~~~-------~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
.....++|. .+|.++++.-..+.|...++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 346778883 5677777666677788887764
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.04 Score=45.87 Aligned_cols=229 Identities=17% Similarity=0.155 Sum_probs=137.4
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC-ceeEeeecccc----cc
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET-SKLVRNLEGHH----RR 102 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~----~~ 102 (335)
.+++.-.+..+.++|+++.+..+...+. ..|.-=.|-.+. .|+..+ +..|+-|+++. ..+++.+..|. ..
T Consensus 78 ~iiALrag~~lQiFnle~K~klks~~~~---e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~Q 152 (494)
T 1bpo_A 78 KVIALKAGKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQ 152 (494)
T ss_dssp SCEEEEETTEEEEEETTTTEEEEEEECS---SCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCE
T ss_pred cEEEEecCCeEEEEchHHhhhhcceecC---CCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccce
Confidence 5666667899999999998877777653 346666675443 455554 55899999974 34555565443 45
Q ss_pred eeEeeecCCCCCEEEEee-------CCCcEEEEecccCCeeeEEeecCCCCEEEEEeecC---CCEEEEEeCC---CeEE
Q 019847 103 VATSSWNHWNGHILTSGS-------KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNE---GNLLASGGDD---NVVR 169 (335)
Q Consensus 103 v~~~~~~~~~~~~l~~~~-------~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d---g~i~ 169 (335)
|..-..++ +.+.++..+ -.|.+.+|..+.. ..+.+.+|-.....+....+ .++++.+... +++.
T Consensus 153 IInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLh 229 (494)
T 1bpo_A 153 IINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH 229 (494)
T ss_dssp EEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTC--CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEE
T ss_pred EEEEEECC-CCCeEEEEeecccCCcccceEEEeecccc--ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEE
Confidence 66666777 666655433 2478889998643 46667777665555444321 1245555443 7899
Q ss_pred EEEccCCC-cccc-----eeecc---CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEE
Q 019847 170 IWERSKMS-SSKS-----LHRFT---DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGL 239 (335)
Q Consensus 170 iwd~~~~~-~~~~-----~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~ 239 (335)
+-++.... .... ...+. ...+-..++..++.-..++... .-|.+.+||++++.++..-+-. .++..-
T Consensus 230 i~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT---K~G~i~lyDleTgt~i~~nrIs~~~iF~t 306 (494)
T 1bpo_A 230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYMNRISGETIFVT 306 (494)
T ss_dssp EEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE---TTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe---cCceEEEEecccceeeeeecccCCceEEe
Confidence 99986531 1111 11111 1234456777777766555554 7899999999999998766542 334333
Q ss_pred EeCCCCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 240 EWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
+.+....-++.. ...|.|.--.++..+.
T Consensus 307 ~~~~~~~Gi~~V------nr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 307 APHEATAGIIGV------NRKGQVLSVCVEEENI 334 (494)
T ss_dssp EEETTTTEEEEE------ETTCEEEEEEECTTTH
T ss_pred cccCCCCcEEEE------ccCceEEEEEEccccc
Confidence 333332222222 3456665555554433
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.025 Score=45.48 Aligned_cols=176 Identities=10% Similarity=0.073 Sum_probs=89.2
Q ss_pred EEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC--------CcEEEEeCCCceeEee--ecccccceeEee
Q 019847 38 LFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD--------SKLQLWDAETSKLVRN--LEGHHRRVATSS 107 (335)
Q Consensus 38 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iw~~~~~~~~~~--~~~~~~~v~~~~ 107 (335)
+.+||..+.+......++.....-..+.+ +++.++.|+.+ ..+.+||..+.+-... +.........+.
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 146 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS 146 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE
Confidence 78888888876554333322112222222 56667777632 4689999987654322 221111122222
Q ss_pred ecCCCCCEEEEeeC-C-----CcEEEEecccCCeeeEE-eecCCCCEEEEEeecCCCEEEEEeCCC-----eEEEEEccC
Q 019847 108 WNHWNGHILTSGSK-D-----KSIINHDVRVSNNVTSC-IKAHSGEVCGLKWSNEGNLLASGGDDN-----VVRIWERSK 175 (335)
Q Consensus 108 ~~~~~~~~l~~~~~-d-----g~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~ 175 (335)
+ ++.+++.|+. + ..+.+||+.+..-.... +......-..+. -++++++.|+.++ .+.+||+.+
T Consensus 147 ~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~ 221 (315)
T 4asc_A 147 H---MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITD 221 (315)
T ss_dssp E---TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred E---CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCC
Confidence 2 6778888876 2 46888998765421111 111111112222 2667888887654 578888765
Q ss_pred CCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC--------------CeEEEEECCCCce
Q 019847 176 MSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED--------------GCIKIWNVQKGTC 226 (335)
Q Consensus 176 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d--------------~~i~i~d~~~~~~ 226 (335)
. ....+..+.........+.+ ++ .+++.|+ .+ ..+.+||+++.+-
T Consensus 222 ~-~W~~~~~~p~~r~~~~~~~~--~~-~l~v~GG--~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 280 (315)
T 4asc_A 222 N-KWAPFEAFPQERSSLSLVSL--VG-TLYAIGG--FATLETESGELVPTELNDIWRYNEEEKKW 280 (315)
T ss_dssp T-EEEEECCCSSCCBSCEEEEE--TT-EEEEEEE--EEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred C-eEEECCCCCCcccceeEEEE--CC-EEEEECC--ccccCcCCccccccccCcEEEecCCCChh
Confidence 3 23333322211222222222 33 5666664 32 2467788776644
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.038 Score=44.96 Aligned_cols=232 Identities=13% Similarity=0.119 Sum_probs=119.3
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee--Eeee----cccccceeEeeecCC---CCCEEEEee--CCCcEE
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL--VRNL----EGHHRRVATSSWNHW---NGHILTSGS--KDKSII 126 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~----~~~~~~v~~~~~~~~---~~~~l~~~~--~dg~i~ 126 (335)
-.....++|.|+|.++++--..|.|++++..+++. +..+ .........++++|. ++.+.++-+ .++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 45578999999998776665589999998765543 2222 123467889999983 244444322 345566
Q ss_pred EEecccC----------CeeeEEee-cCCCCEEEEEeecCCCEEEEEeC-------------CCeEEEEEccCCCc----
Q 019847 127 NHDVRVS----------NNVTSCIK-AHSGEVCGLKWSNEGNLLASGGD-------------DNVVRIWERSKMSS---- 178 (335)
Q Consensus 127 ~~d~~~~----------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~~---- 178 (335)
-|.+... +.+...+. .....-..|.|.|||.++++.+. .|.|.-.+....-.
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 6665431 11111121 11123456999999987777542 34555555432100
Q ss_pred --ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce------------------EEEeecC-CcEe
Q 019847 179 --SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC------------------IHGIDAK-AQIC 237 (335)
Q Consensus 179 --~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~------------------~~~~~~~-~~~~ 237 (335)
...+.. .+|. ....++|+|++. ++++-.| .|+.=.|--++.+.. +..+... ....
T Consensus 191 f~~~~i~a-~G~R-Np~Gla~dp~G~-L~~~d~g-~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~ 266 (347)
T 3das_A 191 FPGSPVYS-YGHR-NVQGLAWDDKQR-LFASEFG-QDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPS 266 (347)
T ss_dssp STTCCEEE-BCCS-BCCEEEECTTCC-EEEEECC-SSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEE
T ss_pred CCCCeEEe-eCCC-CcceEEECCCCC-EEEEecC-CCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCc
Confidence 011111 2333 346789999864 5555322 333222222222211 1111111 1233
Q ss_pred EEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce----eecccCCCCceeEeEEcCCCCEEEEEe
Q 019847 238 GLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK----VGELQSSNSRILDLSQSPDGLTVATAG 300 (335)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~ 300 (335)
.++|.. +.. |.+.-..+.|....+..... ...+.+..+++.+++..|||.++++-+
T Consensus 267 G~~~~~-g~~------~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 267 GIAYAE-GSV------WMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEET-TEE------EEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred ceEEEc-Cce------eeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 444432 222 22234455666666554332 222334456799999999997666543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.052 Score=46.22 Aligned_cols=105 Identities=10% Similarity=0.116 Sum_probs=61.0
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee--Eeeecc------cccceeEeeecCC--CCCEEEEee-C------
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL--VRNLEG------HHRRVATSSWNHW--NGHILTSGS-K------ 121 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~------~~~~v~~~~~~~~--~~~~l~~~~-~------ 121 (335)
.....++|.|+|+++++-...+.|++++..+++. +..+.. .......++|+|. .+..|+.+. .
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 3468999999998666654334798888655543 222221 2456779999983 044444433 2
Q ss_pred ------CCcEEEEecccCC-------eeeEEee-cCCCCEEEEEeecCCCEEEEEe
Q 019847 122 ------DKSIINHDVRVSN-------NVTSCIK-AHSGEVCGLKWSNEGNLLASGG 163 (335)
Q Consensus 122 ------dg~i~~~d~~~~~-------~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~ 163 (335)
...|.-++..... .+...+. ........|+|.|||.++++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2355556554221 1111121 1123478999999998777755
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.016 Score=46.96 Aligned_cols=203 Identities=9% Similarity=0.002 Sum_probs=106.0
Q ss_pred CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEc--CCCCEEEEE--ECCCcEEEEeCCCceeEeeecccccc
Q 019847 27 NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS--HDAKTLAVG--YMDSKLQLWDAETSKLVRNLEGHHRR 102 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~ 102 (335)
+.+++++.||.|+-.|.++|+.+-.+... ...++....-. +.+..++.+ +.||.|..++.++|.....+... ..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~-~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR-QL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH-HH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc-cc
Confidence 46788889999999999999876655443 11222221100 112234444 58999999999988655443321 11
Q ss_pred ee--Eeeec--C--------CCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCC------EEEEEee-----cCCCEE
Q 019847 103 VA--TSSWN--H--------WNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGE------VCGLKWS-----NEGNLL 159 (335)
Q Consensus 103 v~--~~~~~--~--------~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~------i~~~~~~-----~~~~~l 159 (335)
+. -+... | ..+..+++|+.+|.+...|+++++.+...-.+.... ..|.... ..+..+
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 10 01110 0 045688999999999999999888755432221111 1111110 123567
Q ss_pred EEEeCCCeEEEEEccCCCcccc-eeeccCCCCC--ee-EEEecCCCCcEEEEecCCCCCeEEEEECCCCceEE-EeecCC
Q 019847 160 ASGGDDNVVRIWERSKMSSSKS-LHRFTDHCGG--VK-ALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIH-GIDAKA 234 (335)
Q Consensus 160 ~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~--v~-~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~~~~ 234 (335)
+.+..+..+.+.+ +++..... .......... +. .-..+.++.. ++.. .||.|..+|..+|+.+. ..+...
T Consensus 169 ~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~---~dg~v~A~d~~~G~~~W~~~~l~s 243 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPF---RDKSLLASDLDFRIARWVSPTFPG 243 (339)
T ss_dssp EEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEE---TTTEEEEECSTTCCEEEECCCCSS
T ss_pred EEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEEC---CCCEEEEEECCCCcEEEEeecCCC
Confidence 7777676666665 22211110 0111110000 00 0001223444 3433 69999999999888876 444444
Q ss_pred cE
Q 019847 235 QI 236 (335)
Q Consensus 235 ~~ 236 (335)
++
T Consensus 244 Pv 245 (339)
T 2be1_A 244 II 245 (339)
T ss_dssp CE
T ss_pred Ce
Confidence 43
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.061 Score=43.26 Aligned_cols=228 Identities=15% Similarity=0.121 Sum_probs=103.9
Q ss_pred EEEEEECCCcEEEEeCCCceeEee-ecc-cccceeEeeecCCCCCEEEEeeC----CC-------cEEEEecccCCeeeE
Q 019847 72 TLAVGYMDSKLQLWDAETSKLVRN-LEG-HHRRVATSSWNHWNGHILTSGSK----DK-------SIINHDVRVSNNVTS 138 (335)
Q Consensus 72 ~l~~~~~dg~i~iw~~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~l~~~~~----dg-------~i~~~d~~~~~~~~~ 138 (335)
.++.|+. .+..||..+.+-... +.. ....-.+++ .. ++.+++.|+. ++ .+..||..+......
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIV-TQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEE-CS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEE-EE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 3444442 488999988765431 111 111112222 23 6788888873 12 167788765432111
Q ss_pred -EeecCCCCEEEEEeecCCCEEEEEeCC-------CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC
Q 019847 139 -CIKAHSGEVCGLKWSNEGNLLASGGDD-------NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210 (335)
Q Consensus 139 -~~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 210 (335)
.+........ ++. -++++++.|+.+ ..+.+||+.+.. ...+..+....... +++. .++ .+++.|+.
T Consensus 94 ~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~-~~~~-~~~-~iyv~GG~ 167 (318)
T 2woz_A 94 PPLPSARCLFG-LGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAK-WSEVKNLPIKVYGH-NVIS-HNG-MIYCLGGK 167 (318)
T ss_dssp SCBSSCBCSCE-EEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTE-EEEECCCSSCEESC-EEEE-ETT-EEEEECCE
T ss_pred CCCCccccccc-eEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCC-EeECCCCCCccccc-EEEE-ECC-EEEEEcCC
Confidence 0111111111 222 256777777754 247788876532 22222211111111 2222 233 57776641
Q ss_pred C----CCCeEEEEECCCCceEEEeecCC--cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee--ecccCCCC
Q 019847 211 R----EDGCIKIWNVQKGTCIHGIDAKA--QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV--GELQSSNS 282 (335)
Q Consensus 211 ~----~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~~~~~~ 282 (335)
. .-..+.+||+.+.+-...-.... .-.+++. -+++.++.|.. ........+.+||..+.+-. ..+.....
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 245 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGV-TEDGLSASVEAFDLKTNKWEVMTEFPQERS 245 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEE-ETTEEEEEEEEEETTTCCEEECCCCSSCCB
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCc-CCCCccceEEEEECCCCeEEECCCCCCccc
Confidence 1 12458999998875433222111 1112222 24455554421 00011246778998775432 22222111
Q ss_pred ceeEeEEcCCCCEEEEEeCC--------------CcEEEEecCCC
Q 019847 283 RILDLSQSPDGLTVATAGAD--------------ETIRFWEAFGP 313 (335)
Q Consensus 283 ~i~~~~~~~~~~~l~~~~~d--------------g~v~iw~~~~~ 313 (335)
....+ .-++++++.|+.+ ..+.+||+...
T Consensus 246 ~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 246 SISLV--SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp SCEEE--EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred ceEEE--EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 11222 2356677777754 34777787664
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.031 Score=45.30 Aligned_cols=108 Identities=8% Similarity=-0.012 Sum_probs=65.6
Q ss_pred CEEEEEECCCcEEEEeCCCceeEeeecccc-cceeEeeec--CCCCCEEEEe-eCCCcEEEEecccCCeeeEEeec---C
Q 019847 71 KTLAVGYMDSKLQLWDAETSKLVRNLEGHH-RRVATSSWN--HWNGHILTSG-SKDKSIINHDVRVSNNVTSCIKA---H 143 (335)
Q Consensus 71 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~--~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~---~ 143 (335)
..+++++.||.|.-+|.++|+....++... .++....-. +.++..++.. +.||.+..++..++......-.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 478899999999999999999998887541 222222111 1122344443 68999999998765432211110 1
Q ss_pred CCCEEE---EEe-----ecCCCEEEEEeCCCeEEEEEccCCCc
Q 019847 144 SGEVCG---LKW-----SNEGNLLASGGDDNVVRIWERSKMSS 178 (335)
Q Consensus 144 ~~~i~~---~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~ 178 (335)
..++.. ... ...+..+++|+.+|.+.-.|+++++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~ 133 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI 133 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence 222221 000 01355788899999999999887543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.012 Score=44.06 Aligned_cols=104 Identities=11% Similarity=0.031 Sum_probs=65.6
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccc--------eeEeeecCCCCCEEEEeeCCCcEEEEec
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRR--------VATSSWNHWNGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 130 (335)
..+..++|+|+|.+.++ .+|.+.-.+..+.+...-+. .... -.++.|.| ++.+.++ .||.|+-++.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCC
Confidence 46789999999986666 67877777765422111111 1122 47788888 8887777 5699988876
Q ss_pred ccCCeee-----EEe-ecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 131 RVSNNVT-----SCI-KAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 131 ~~~~~~~-----~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
.+..... ..+ ..-=..+..|.+.|+|.+.++. |+.++-
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 4332210 111 1111467999999999888776 777543
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.04 E-value=0.24 Score=47.41 Aligned_cols=249 Identities=10% Similarity=0.002 Sum_probs=132.6
Q ss_pred CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee-cccccceeEeeecCCC-
Q 019847 35 GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL-EGHHRRVATSSWNHWN- 112 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~- 112 (335)
...|++.+.+..........+ ....|...+.+ +.+++.++ .+.+.++++..+++.... ..-...|.|+++.|..
T Consensus 491 ~~~Irli~~~~~~~~~~w~~p-~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~ 566 (1158)
T 3ei3_A 491 SASVRLVSQEPKALVSEWKEP-QAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGD 566 (1158)
T ss_dssp SSCEEEEESSSCCEEEEECCT-TCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSS
T ss_pred cCEEEEEECCCCeEEEEEECC-CCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCC
Confidence 345777776554443333322 23457777664 34676665 678888887765432211 1235689999987622
Q ss_pred ----CCEEEEeeC-CCcEEEEecccCCeeeEEeecCCCCEEEEEeec--CCCEEEEEeCCCeEEEEEccC--CCccccee
Q 019847 113 ----GHILTSGSK-DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN--EGNLLASGGDDNVVRIWERSK--MSSSKSLH 183 (335)
Q Consensus 113 ----~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~ 183 (335)
.++++.|.. |++++++++...+.+.....+......++.+.. ...+|..|-.||.+.-+.+.. +.......
T Consensus 567 ~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~ 646 (1158)
T 3ei3_A 567 SNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKK 646 (1158)
T ss_dssp STTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEE
T ss_pred CcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCcccccee
Confidence 478999997 999999999865543322222223455555543 345788999999987766543 11111111
Q ss_pred eccCCCCCeeEEEecCCCC-cEEEEecCCCCCeEEEEECCCCceE-EEeecCCcEeEEEeCCCC--ceeeeeeeeeeecC
Q 019847 184 RFTDHCGGVKALAWSPHQV-NVLATGGGREDGCIKIWNVQKGTCI-HGIDAKAQICGLEWNRHH--KEILSGHGFSASGD 259 (335)
Q Consensus 184 ~~~~~~~~v~~~~~~~~~~-~~~~~~~g~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 259 (335)
.+.+ ..++.-..+...+. .+++++ +....++.-+ ++.. ..+....--....|+... .-++. ..
T Consensus 647 ~~LG-~~pv~L~~~~~~~~~~V~a~s----~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~-------~~ 713 (1158)
T 3ei3_A 647 VTLG-TQPTVLRTFRSLSTTNVFACS----DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLAL-------AN 713 (1158)
T ss_dssp EECC-SSCCEEEEEESSSCEEEEEES----SSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEE-------EC
T ss_pred EEcC-CCceEEEEEeeCCceeEEEEC----CCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEE-------Ec
Confidence 2222 33444444433333 344443 4545555433 3322 222222111223343321 11221 22
Q ss_pred CCeEEEEECCCCcee--ecccCCCCceeEeEEcCCCCEEEEEeC
Q 019847 260 GNKLCLWKYPNMTKV--GELQSSNSRILDLSQSPDGLTVATAGA 301 (335)
Q Consensus 260 ~~~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~ 301 (335)
++.++|..+.+.+.. .++. -...+..++++|+.+.++.+..
T Consensus 714 ~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~ 756 (1158)
T 3ei3_A 714 NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSS 756 (1158)
T ss_dssp SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEE
T ss_pred CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEE
Confidence 566888887654322 2222 2346789999998877766553
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.094 Score=42.15 Aligned_cols=188 Identities=16% Similarity=0.152 Sum_probs=94.6
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC----CC-------cEEEEeCCCceeEee-
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM----DS-------KLQLWDAETSKLVRN- 95 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg-------~i~iw~~~~~~~~~~- 95 (335)
.+++.+. ..+..||..+++... ..++.............++..++.|+. ++ .+.+||..+.+-...
T Consensus 17 ~i~~~GG-~~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 17 LILLVND-TAAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEEECS-SEEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhhccc-cceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 3444443 458999999888755 333322222333444567788888873 12 177888877654332
Q ss_pred -ecccccceeEeeecCCCCCEEEEeeCC-------CcEEEEecccCCeeeEEeecCCCCEE--EEEeecCCCEEEEEeCC
Q 019847 96 -LEGHHRRVATSSWNHWNGHILTSGSKD-------KSIINHDVRVSNNVTSCIKAHSGEVC--GLKWSNEGNLLASGGDD 165 (335)
Q Consensus 96 -~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~~~d~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~l~~~~~d 165 (335)
+.........+.+ ++.+++.|+.+ ..+.+||+.+..-.. ......+.. +++ ..++++++.|+.+
T Consensus 95 ~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~--~~~~p~~r~~~~~~-~~~~~iyv~GG~~ 168 (318)
T 2woz_A 95 PLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE--VKNLPIKVYGHNVI-SHNGMIYCLGGKT 168 (318)
T ss_dssp CBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEE--ECCCSSCEESCEEE-EETTEEEEECCEE
T ss_pred CCCccccccceEEE---CCEEEEEcCccCCCCcccceEEEEeCCCCCEeE--CCCCCCcccccEEE-EECCEEEEEcCCC
Confidence 1111111122222 67788888754 257788887544211 111111111 112 2466777777642
Q ss_pred ------CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC---CeEEEEECCCCceE
Q 019847 166 ------NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED---GCIKIWNVQKGTCI 227 (335)
Q Consensus 166 ------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d---~~i~i~d~~~~~~~ 227 (335)
..+.+||+.+.. ...+............+.+ ++ .+++.|+...+ ..+.+||+.+.+-.
T Consensus 169 ~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 169 DDKKCTNRVFIYNPKKGD-WKDLAPMKTPRSMFGVAIH--KG-KIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp SSSCBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TT-EEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred CCCCccceEEEEcCCCCE-EEECCCCCCCcccceEEEE--CC-EEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 358899977532 2333222211111222222 33 56666641111 35778998876543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.092 Score=41.93 Aligned_cols=214 Identities=8% Similarity=0.019 Sum_probs=112.7
Q ss_pred cCCCCEEEEEE--CCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeC-C-------------CcEEEEec
Q 019847 67 SHDAKTLAVGY--MDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK-D-------------KSIINHDV 130 (335)
Q Consensus 67 ~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-------------g~i~~~d~ 130 (335)
++++..+.... .++.|...+.+... ...+... .+. -+++ +++.|+-+.. + ..|+..++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~--~~~--~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND--TAM--YINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE--EEE--EEEE-CSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC--cee--eEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 34666666654 24556666654332 3333321 222 2345 5555555443 2 35666676
Q ss_pred ccCCeeeEEeecCCCCEEEEEeecCCCEEEEEe--CCC--eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEE
Q 019847 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGG--DDN--VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLA 206 (335)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 206 (335)
...+ ...+... . ...|+++++.|+-.. .++ .|+.-++... . ...+..+.. ..++|+++.++.
T Consensus 96 dg~~--~~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~---~~~lt~~~~----~~~~~~g~~iy~ 161 (302)
T 3s25_A 96 NGHG--STVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-E---KKKIKNHYL----FTCNTSDRYFYY 161 (302)
T ss_dssp TSCC--CEEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSC-C---CEEEESSCC----CCSEEETTEEEE
T ss_pred CCCc--ceEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCC-C---eEEEeCCCc----eEeeEECCEEEE
Confidence 6443 2222222 2 236778888888776 344 4555555432 1 222222322 346788888888
Q ss_pred EecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeE
Q 019847 207 TGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILD 286 (335)
Q Consensus 207 ~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 286 (335)
+.. ....|...++..+.....++ .... ..+.|++.+++-... .....|..-++...... .+.. ..+
T Consensus 162 t~~--g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~----~~~~~I~~~~ldG~~~~-~Lt~--~~~-- 227 (302)
T 3s25_A 162 NNP--KNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDV----NRDNAIVHVNINNPNPV-VLTE--ANI-- 227 (302)
T ss_dssp ECT--TTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEG----GGTTEEEEECSSSCCCE-ECSC--SCE--
T ss_pred EeC--CCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEc----CCCcEEEEEECCCCCeE-EEeC--CCc--
Confidence 763 46789999987665443333 2222 235588888865421 22356777777655432 2222 223
Q ss_pred eEEcCCCCEEEEEeC--CCcEEEEecCCCC
Q 019847 287 LSQSPDGLTVATAGA--DETIRFWEAFGPS 314 (335)
Q Consensus 287 ~~~~~~~~~l~~~~~--dg~v~iw~~~~~~ 314 (335)
..|+|++.+|.-++. .+.|..-++++..
T Consensus 228 ~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 228 EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 347778877776532 3455555555543
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.23 Score=45.35 Aligned_cols=269 Identities=10% Similarity=0.076 Sum_probs=149.1
Q ss_pred cceeeeecC-CceEEEecCCeEEEEEecCCceeeEEeecCC----CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 18 YSKVIDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQVPGE----DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 18 ~~~~~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
.+.++.-.. +.+.+++. +.+..++..+++.... ..+.. ...|.++...+++..|..|+. +-+..+|..+++.
T Consensus 147 ~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~-~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~ 223 (758)
T 3ott_A 147 TIYSIIRTKDNQIYVGTY-NGLCRYIPSNGKFEGI-PLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI 223 (758)
T ss_dssp CEEEEEECTTCCEEEEET-TEEEEEETTTTEEEEE-CCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE
T ss_pred eEEEEEEcCCCCEEEEeC-CCHhhCccCCCceEEe-cCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE
Confidence 345555553 55666554 5688888777654322 22211 234788888777776666664 4588899877654
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee-------cCCCCEEEEEeecCCCEEEEEeCC
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK-------AHSGEVCGLKWSNEGNLLASGGDD 165 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~d 165 (335)
..........|.++...+ ++.+. .|+.+ -+.+++..+... ..... -....|.++....+|. |..|+..
T Consensus 224 ~~~~~l~~~~i~~i~~d~-~g~lW-igT~~-Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~ 298 (758)
T 3ott_A 224 KQTEAFHNNSIKSLALDG-NGDLL-AGTDN-GLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDY 298 (758)
T ss_dssp EEEEEEEEEEEEEEEECT-TCCEE-EEETT-EEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESS
T ss_pred EeccCCCCCeEEEEEEcC-CCCEE-EEeCC-ceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCC
Confidence 322222234577777765 55544 45544 577888764332 21111 1224588888777776 4455556
Q ss_pred CeEEEEEccCCCcccceee--c--cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc--eEEEee--------
Q 019847 166 NVVRIWERSKMSSSKSLHR--F--TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT--CIHGID-------- 231 (335)
Q Consensus 166 g~i~iwd~~~~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~-------- 231 (335)
| +.++.... ....... . ......|.++.-.++|...+.+ .+ -+..++..+++ ....+.
T Consensus 299 G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt----~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l 370 (758)
T 3ott_A 299 G-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG----AN-GLIRFTDPAGERHDAIWYRMGDKTYPL 370 (758)
T ss_dssp S-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE----TT-EEEEESCTTSSCCCCEEECTTCSSSCC
T ss_pred c-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEEEee----CC-cceeecccccccceeEEeccCCcCCCC
Confidence 6 54443211 1111110 0 1123468888888887544432 34 46667655432 122222
Q ss_pred cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecc--cC----CCCceeEeEEcCCCCEEEEEeCCCcE
Q 019847 232 AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL--QS----SNSRILDLSQSPDGLTVATAGADETI 305 (335)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~--~~----~~~~i~~~~~~~~~~~l~~~~~dg~v 305 (335)
....|.++.-.++|...+. + ++.+..||..+++...-. .. ....|.++...++|++. .|+..+-+
T Consensus 371 ~~~~v~~i~~d~~g~lWig-------t-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igT~~~Gl 441 (758)
T 3ott_A 371 SHNRIRHIYEDKEQQLWIA-------T-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLW-ISTCLGGI 441 (758)
T ss_dssp SCSCEEEEEECTTSCEEEE-------E-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEE-EEESSSCE
T ss_pred CCCceEEEEECCCCCEEEE-------e-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEE-EEECCCce
Confidence 1235788888887775543 2 567899998776543211 11 22357888888877644 46665667
Q ss_pred EEEecC
Q 019847 306 RFWEAF 311 (335)
Q Consensus 306 ~iw~~~ 311 (335)
..++..
T Consensus 442 ~~~~~~ 447 (758)
T 3ott_A 442 FVVDKH 447 (758)
T ss_dssp EEEEHH
T ss_pred EEEccc
Confidence 777754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.12 Score=49.85 Aligned_cols=193 Identities=19% Similarity=0.209 Sum_probs=114.5
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC-ceeEeeeccc----ccc
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET-SKLVRNLEGH----HRR 102 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~----~~~ 102 (335)
.+++.-.+.++.|+|+++.+..+...+ ...|.-=.|-.+. .|+..+ +..|.-|++.. ..+++.+..| ...
T Consensus 78 ~iiALrag~~lQiFnl~~k~klks~~~---~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~Q 152 (1630)
T 1xi4_A 78 KVIALKAGKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQ 152 (1630)
T ss_pred ceEEEecCCeEEEeehHHhhhhccccc---CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCe
Confidence 566666788999999998876665554 3456666675444 444443 45799999974 3444445444 345
Q ss_pred eeEeeecCCCCCEEEEee-------CCCcEEEEecccCCeeeEEeecCCCCEEEEEee--c-CCCEEEEEeC---CCeEE
Q 019847 103 VATSSWNHWNGHILTSGS-------KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWS--N-EGNLLASGGD---DNVVR 169 (335)
Q Consensus 103 v~~~~~~~~~~~~l~~~~-------~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~--~-~~~~l~~~~~---dg~i~ 169 (335)
|..-..++ +.+.++..+ -.|.+.+|..+.. ..+.+.+|-+....+... + ....++.+.. .+.+.
T Consensus 153 IinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er~--~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLh 229 (1630)
T 1xi4_A 153 IINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH 229 (1630)
T ss_pred eEEeeeCC-CCCeEEEEeeccCCCcccceeeeeecccc--cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEE
Confidence 66666777 566555332 3578899988643 345566666554444432 1 1223333332 36899
Q ss_pred EEEccCCCccc-ce-----eeccC---CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee
Q 019847 170 IWERSKMSSSK-SL-----HRFTD---HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID 231 (335)
Q Consensus 170 iwd~~~~~~~~-~~-----~~~~~---~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 231 (335)
|-++....... .. ..+.. ..+-..++..++.-..++... .-|.+.+||+.++.++..-+
T Consensus 230 i~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~it---k~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred EEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEe---cCceEEEEecccchhhhhcc
Confidence 99886531111 11 11111 123344666676655455444 78999999999998875544
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.29 Score=44.20 Aligned_cols=203 Identities=12% Similarity=0.090 Sum_probs=101.8
Q ss_pred CCCCEEEEEECC----CcEEEEeCCCceeEeee-c-------ccccceeEeeecCCCCCEEEEeeCCC------cEEEEe
Q 019847 68 HDAKTLAVGYMD----SKLQLWDAETSKLVRNL-E-------GHHRRVATSSWNHWNGHILTSGSKDK------SIINHD 129 (335)
Q Consensus 68 ~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~-~-------~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~~~d 129 (335)
.++..++.|+.+ ..+.+||..+++....- . .....-..+.+.. ++.+++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 467777777753 46888998876543322 1 1111222233322 566777777543 578888
Q ss_pred cccCCeeeE-EeecCCCCEEEEEeecCCCEEEEEeCCC--eEEEEEccCCCcccceee---ccCCCCCeeEEEecCCCCc
Q 019847 130 VRVSNNVTS-CIKAHSGEVCGLKWSNEGNLLASGGDDN--VVRIWERSKMSSSKSLHR---FTDHCGGVKALAWSPHQVN 203 (335)
Q Consensus 130 ~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~ 203 (335)
..+...... .+...... .+++...++++++.|+.++ .+.+||+.+.. ...+.. .........++.+..+...
T Consensus 475 ~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~-W~~~~~~g~~p~~r~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEI-FKDVTPKDEFFQNSLVSAGLEFDPVSKQ 552 (695)
T ss_dssp TTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTE-EEECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred CCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCc-eEEccCCCCCCCcccceeEEEEeCCCCE
Confidence 876432111 01111111 1222224778888887655 68999977532 222221 1112222334556655346
Q ss_pred EEEEecCCCC-----CeEEEEECCCCce-----EEEeec---CC-cEeEEEeCCCCceeeeeeeeeee--cCCCeEEEEE
Q 019847 204 VLATGGGRED-----GCIKIWNVQKGTC-----IHGIDA---KA-QICGLEWNRHHKEILSGHGFSAS--GDGNKLCLWK 267 (335)
Q Consensus 204 ~~~~~~g~~d-----~~i~i~d~~~~~~-----~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~i~d 267 (335)
+++.|+...+ ..+.+||+.+.+- -..+.. .. .-.++....+++.++.|..-... .....+.+||
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 7777752112 4689999988761 111111 11 11122223325555544210000 1246799999
Q ss_pred CCCCce
Q 019847 268 YPNMTK 273 (335)
Q Consensus 268 ~~~~~~ 273 (335)
..+.+-
T Consensus 633 ~~t~~W 638 (695)
T 2zwa_A 633 PLSETL 638 (695)
T ss_dssp TTTTEE
T ss_pred CCCCeE
Confidence 887654
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.35 Score=44.19 Aligned_cols=266 Identities=12% Similarity=0.093 Sum_probs=143.6
Q ss_pred ccceeeeecCC-ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee
Q 019847 17 YYSKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN 95 (335)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 95 (335)
-.+.++.-..+ .+.+++ ++.+..||..+.+.... .......|.++.. .++ .|..++.+ -+..+|..+++....
T Consensus 63 ~~i~~i~~d~~g~lWigT-~~Gl~~yd~~~~~f~~~--~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~ 136 (758)
T 3ott_A 63 TRIYCGVIIDNTYLYMGT-DNGILVYNYRADRYEQP--ETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSF 136 (758)
T ss_dssp SCEEEEEEETTTEEEEEE-TTEEEEEETTTTEECCC--SCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred ceEEEEEEcCCCcEEEEe-CCCeEEEeCCCCEEECc--ccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence 34566655554 455555 45688999887654331 1112335776654 344 56667666 588899876654322
Q ss_pred ec----ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE-eec----CCCCEEEEEeecCCCEEEEEeCCC
Q 019847 96 LE----GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC-IKA----HSGEVCGLKWSNEGNLLASGGDDN 166 (335)
Q Consensus 96 ~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~----~~~~i~~~~~~~~~~~l~~~~~dg 166 (335)
.. .....|.++...+ ++.+.+ |+.+ -+..++..+... ... ... ....|.++...+++..|..|+. +
T Consensus 137 ~~~~~~l~~~~i~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~ 211 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTK-DNQIYV-GTYN-GLCRYIPSNGKF-EGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-G 211 (758)
T ss_dssp CHHHHCCSCSCEEEEEECT-TCCEEE-EETT-EEEEEETTTTEE-EEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-E
T ss_pred ccCCCCcCCCeEEEEEEcC-CCCEEE-EeCC-CHhhCccCCCce-EEecCCCccccccceeEEEEEECCCCEEEEEEC-C
Confidence 01 1124577777665 555544 5554 477777654331 111 111 1224888887777776666664 4
Q ss_pred eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee--------cCCcEeE
Q 019847 167 VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID--------AKAQICG 238 (335)
Q Consensus 167 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--------~~~~~~~ 238 (335)
-+..+|..+... .....+ ....|.++...+++...+.+ ++-+.+++..+++...... ....|.+
T Consensus 212 Gl~~~~~~~~~~-~~~~~l--~~~~i~~i~~d~~g~lWigT-----~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ 283 (758)
T 3ott_A 212 YLFQYFPSTGQI-KQTEAF--HNNSIKSLALDGNGDLLAGT-----DNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWN 283 (758)
T ss_dssp EEEEEETTTTEE-EEEEEE--EEEEEEEEEECTTCCEEEEE-----TTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEE
T ss_pred CCeEEcCCCCeE-EeccCC--CCCeEEEEEEcCCCCEEEEe-----CCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEE
Confidence 588888654221 111111 12357888888887544443 3458888877655432211 1235788
Q ss_pred EEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecc---c--CCCCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 239 LEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL---Q--SSNSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~---~--~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
+..+.+|...+.. ..| +.++.....-..... . .....|.++.-.++|.+.+ |+.+| +..++..
T Consensus 284 i~~D~~g~lWiGT-------~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~ 351 (758)
T 3ott_A 284 IFADQEHNIWLGT-------DYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDP 351 (758)
T ss_dssp EEECTTCCEEEEE-------SSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCT
T ss_pred EEEcCCCCEEEEe-------CCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeeccc
Confidence 8888887755432 244 444432211111110 0 1234588888888887555 44555 4455543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.22 Score=40.67 Aligned_cols=188 Identities=13% Similarity=0.095 Sum_probs=90.5
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC------------------------------------
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD------------------------------------ 79 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------------------------------ 79 (335)
+.+.+||..+.+......+.. .......+...+++.++.|+.+
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAP-MGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDY 164 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCS-SCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGG
T ss_pred ccEEEEeCCCCcEEECCCCCC-cccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcccccccc
Confidence 468999998887655443331 1111121222577788888754
Q ss_pred ---CcEEEEeCCCceeEee--ecccccceeEeeecCCCCCEEEEeeC------CCcEEEEecccCCeeeEEeecC--C-C
Q 019847 80 ---SKLQLWDAETSKLVRN--LEGHHRRVATSSWNHWNGHILTSGSK------DKSIINHDVRVSNNVTSCIKAH--S-G 145 (335)
Q Consensus 80 ---g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~--~-~ 145 (335)
..+.+||..+.+-... +......-.++... ++.+++.|+. ...+..||+......-..+... . .
T Consensus 165 ~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~ 242 (357)
T 2uvk_A 165 FFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG 242 (357)
T ss_dssp CCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC
T ss_pred CCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc
Confidence 4789999987654332 22111111222222 6777777764 3457778762121111211111 1 1
Q ss_pred CEEEEEeecCCCEEEEEeCC----------------------CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCc
Q 019847 146 EVCGLKWSNEGNLLASGGDD----------------------NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203 (335)
Q Consensus 146 ~i~~~~~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 203 (335)
.....+...++++++.|+.+ ..+.+||+.+. ....+..+........++.+ ++ .
T Consensus 243 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~-~ 318 (357)
T 2uvk_A 243 VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG-KWDKSGELSQGRAYGVSLPW--NN-S 318 (357)
T ss_dssp CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBSSEEEEE--TT-E
T ss_pred cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC-ceeeCCCCCCCcccceeEEe--CC-E
Confidence 11111222356777777632 24778887753 33444433322222223322 33 5
Q ss_pred EEEEecCCCC----CeEEEEECCCCceEEEe
Q 019847 204 VLATGGGRED----GCIKIWNVQKGTCIHGI 230 (335)
Q Consensus 204 ~~~~~~g~~d----~~i~i~d~~~~~~~~~~ 230 (335)
+++.|+.+.+ ..+.++++++++.+...
T Consensus 319 i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 319 LLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred EEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 6666651122 24666688877765443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.2 Score=39.96 Aligned_cols=251 Identities=12% Similarity=0.043 Sum_probs=131.5
Q ss_pred eeecCCceEEEe--cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC--------------CcEEEE
Q 019847 22 IDWGRNNVLAVA--LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD--------------SKLQLW 85 (335)
Q Consensus 22 ~~~~~~~~~~~~--~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~iw 85 (335)
++..++.++... .++.|+..+.+.....++.. . .+--+++++++|...... ..|+..
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~-----~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i 93 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN-----D--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRI 93 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEE-----E--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccC-----C--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEE
Confidence 334445544443 24566666655554333322 1 234568899998877643 367777
Q ss_pred eCCCceeEeeecccccceeEeeecCCCCCEEEEee--CCC--cEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEE
Q 019847 86 DAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS--KDK--SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLAS 161 (335)
Q Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 161 (335)
++...+... +... . ...+++ +++.|+-.. .++ .|...++.... .+.+..+.. .+++++++.|..
T Consensus 94 ~~dg~~~~~-l~~~--~--~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~ 161 (302)
T 3s25_A 94 KRNGHGSTV-LDPD--P--CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYY 161 (302)
T ss_dssp ETTSCCCEE-EECS--C--EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEE
T ss_pred eCCCCcceE-eecC--C--ccEEEE-eCCEEEEEeecCCCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEE
Confidence 777654332 2211 1 225666 666666554 344 45555554222 333433432 456788888887
Q ss_pred EeC-CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEE
Q 019847 162 GGD-DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLE 240 (335)
Q Consensus 162 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 240 (335)
.+. ...|..-++..... +.+ +. +... ..+.|++..++.+..+ ....|..-++..... ..+. ...+ ..
T Consensus 162 t~~g~~~Iy~~~l~g~~~-~~l--~~---~~~~-~~~~P~g~~iy~t~~~-~~~~I~~~~ldG~~~-~~Lt-~~~~--~~ 229 (302)
T 3s25_A 162 NNPKNGQLYRYDTASQSE-ALF--YD---CNCY-KPVVLDDTNVYYMDVN-RDNAIVHVNINNPNP-VVLT-EANI--EH 229 (302)
T ss_dssp ECTTTCCEEEEETTTTEE-EEE--EC---SCEE-EEEEEETTEEEEEEGG-GTTEEEEECSSSCCC-EECS-CSCE--EE
T ss_pred EeCCCceEEEEECCCCCE-EEE--eC---CCcc-ceeeecCCEEEEEEcC-CCcEEEEEECCCCCe-EEEe-CCCc--ce
Confidence 765 56777777664321 222 22 2222 3456888888877631 224677777765543 2332 2223 34
Q ss_pred eCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEe-CCCcEEEEecCC
Q 019847 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAG-ADETIRFWEAFG 312 (335)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~iw~~~~ 312 (335)
++|.+..+.-. .....+.|..-++........... .+.. +++.+.+|+-.. ..+.|..-++.+
T Consensus 230 ~~~~g~~Iy~~----~~~~~~~i~~~~~DG~~r~~l~~~---~~~~--i~i~~d~Iy~td~~~~~i~~~~~dG 293 (302)
T 3s25_A 230 YNVYGSLIFYQ----RGGDNPALCVVKNDGTGFKELAKG---EFCN--INVTSQYVYFTDFVSNKEYCTSTQN 293 (302)
T ss_dssp EEEETTEEEEE----ECSSSCEEEEEETTSCCCEEEEES---CEEE--EEECSSEEEEEETTTCCEEEEESSS
T ss_pred EEECCCEEEEE----ECCCCcEEEEEECCCCccEEeeCC---ccce--EEEeCCEEEEEECCCCeEEEEECCC
Confidence 77888887643 113346777777765433222222 2333 344555665554 345554444433
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.23 Score=37.25 Aligned_cols=146 Identities=15% Similarity=0.080 Sum_probs=81.3
Q ss_pred cceeeeecCC-ceEEEecCCeEEEEEecCCce------eeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc
Q 019847 18 YSKVIDWGRN-NVLAVALGPVLFLWKWENGKV------KKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
.+..++++++ .+.++ .++.++-.+..+.+. ...+--.+-+. -.++.|.|+|.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 3457888875 56666 778766666544211 11111011111 478899999987777 5799988876432
Q ss_pred eeEe------ee-cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe-----eeEEee-cCCCCEEEEEeecCCC
Q 019847 91 KLVR------NL-EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN-----VTSCIK-AHSGEVCGLKWSNEGN 157 (335)
Q Consensus 91 ~~~~------~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-----~~~~~~-~~~~~i~~~~~~~~~~ 157 (335)
..-. .+ ...=..+..+.+.| ++.+.+.. |+.++-....+... ....+. ..-...+.+.|.+++.
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT 194 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred CCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence 1111 01 11124678999999 88877776 77754433332110 011111 2223445577889988
Q ss_pred EEEEEeCCCeEEEEEcc
Q 019847 158 LLASGGDDNVVRIWERS 174 (335)
Q Consensus 158 ~l~~~~~dg~i~iwd~~ 174 (335)
+.++. +| ++|...
T Consensus 195 l~~v~--~g--~~Y~~~ 207 (236)
T 1tl2_A 195 LFGVQ--GG--KFYEDY 207 (236)
T ss_dssp EEEEE--TT--EEEEES
T ss_pred EEEEe--CC--eEEecC
Confidence 77766 77 445443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.53 Score=38.28 Aligned_cols=156 Identities=13% Similarity=0.155 Sum_probs=84.9
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee-eEEe----ecCCCCEEEEEeecC---CCEEEEE-e--
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV-TSCI----KAHSGEVCGLKWSNE---GNLLASG-G-- 163 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~----~~~~~~i~~~~~~~~---~~~l~~~-~-- 163 (335)
.+...-...+.++|.| ++.++++--..|.|++++...+... ...+ .........|+++|+ +..|... +
T Consensus 26 ~va~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 26 TVATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EeecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 3333445678999999 8887776655899999986543321 1111 123566899999995 3444433 2
Q ss_pred CCCeEEEEEccCCC-------cccce-eecc-CCCCCeeEEEecCCCCcEEEEecC----------CCCCeEEEEECCCC
Q 019847 164 DDNVVRIWERSKMS-------SSKSL-HRFT-DHCGGVKALAWSPHQVNVLATGGG----------REDGCIKIWNVQKG 224 (335)
Q Consensus 164 ~dg~i~iwd~~~~~-------~~~~~-~~~~-~~~~~v~~~~~~~~~~~~~~~~~g----------~~d~~i~i~d~~~~ 224 (335)
.+..|.-|.+.... ..+.+ ..+. .....-..|.|.|+|..+++++.+ ...|.|.-.+....
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 34566666655421 11111 1121 112234679999999644444320 01355555554421
Q ss_pred c-------eEEEee-cCCcEeEEEeCCCCceeeee
Q 019847 225 T-------CIHGID-AKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 225 ~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (335)
- ....+. .......++|+|+|...++-
T Consensus 185 ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d 219 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASE 219 (347)
T ss_dssp BCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEE
T ss_pred ccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEe
Confidence 0 001111 23456789999987766543
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.83 Score=39.52 Aligned_cols=231 Identities=8% Similarity=0.011 Sum_probs=130.2
Q ss_pred eEEEecCCeEEEEEecCCceeeEEeecCC-----------------------CCCc--eEEEEcC---CCCEEEEEE-CC
Q 019847 29 VLAVALGPVLFLWKWENGKVKKLLQVPGE-----------------------DDYP--TSVSWSH---DAKTLAVGY-MD 79 (335)
Q Consensus 29 ~~~~~~~~~i~vw~~~~~~~~~~~~~~~~-----------------------~~~v--~~~~~~~---~~~~l~~~~-~d 79 (335)
+.+++..|.|+|+-+.+.+....+..-.. .+.. ..+++.. ||++|+.-. .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 44556789999999998876554432100 0111 2334432 678888876 46
Q ss_pred CcEEEEeCCCceeEeeec-ccccceeEeeec--CCCCCEEEEeeC-------CCcEE---------E---EecccCCeee
Q 019847 80 SKLQLWDAETSKLVRNLE-GHHRRVATSSWN--HWNGHILTSGSK-------DKSII---------N---HDVRVSNNVT 137 (335)
Q Consensus 80 g~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~l~~~~~-------dg~i~---------~---~d~~~~~~~~ 137 (335)
..|...++...++-+.++ .....+..+.|. | +..+++++++ ||... + .|..+.+...
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 778888888877665554 244677788876 5 6667776653 23211 0 1111111111
Q ss_pred EEeecCCCCEEEEEeecCCCEEEEEeCCC---------------eEEEEEccC-------CC--ccc--ceeecc-----
Q 019847 138 SCIKAHSGEVCGLKWSNEGNLLASGGDDN---------------VVRIWERSK-------MS--SSK--SLHRFT----- 186 (335)
Q Consensus 138 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------------~i~iwd~~~-------~~--~~~--~~~~~~----- 186 (335)
+... .+........+++.+.++.+.+. .+.++++.. ++ ... -+..+.
T Consensus 232 Qv~v--~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~ 309 (638)
T 3sbq_A 232 QVIV--DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKD 309 (638)
T ss_dssp EEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBT
T ss_pred EEEc--CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccc
Confidence 1111 11222334456677776655331 355555321 00 000 011111
Q ss_pred ----------CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC------c-------eEEEeecCCcEeEEEeCC
Q 019847 187 ----------DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG------T-------CIHGIDAKAQICGLEWNR 243 (335)
Q Consensus 187 ----------~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~------~-------~~~~~~~~~~~~~~~~~~ 243 (335)
.-......+..+|||+++++++- .+.++.++|+++. + .....+..-.....+|++
T Consensus 310 ~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GK--LsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~ 387 (638)
T 3sbq_A 310 GKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGK--LSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG 387 (638)
T ss_dssp TBCCSSEEEEEESSSCCCEEECTTSCEEEEECT--TSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS
T ss_pred ccCCceEEEEeCCCCCcceeeCCCCCEEEEcCC--CCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC
Confidence 11233456889999999998876 8999999998742 1 133444555678899999
Q ss_pred CCceeeeeeeeeeecCCCeEEEEECCC
Q 019847 244 HHKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
+|. ..+.. --|..|.-|++..
T Consensus 388 ~G~-aYTtl-----fidSqvvkWni~~ 408 (638)
T 3sbq_A 388 RGN-AYTTL-----FIDSQVVKWNMEE 408 (638)
T ss_dssp SSE-EEEEE-----TTTTEEEEEEHHH
T ss_pred CCc-eEeee-----eecceEEEEeccH
Confidence 993 33332 4599999999864
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.92 Score=39.27 Aligned_cols=231 Identities=14% Similarity=0.123 Sum_probs=131.5
Q ss_pred cccceeeeecCC----ceEEEe--cCCeEEEEEecCCceeeEEeecCCCCCceEEEEc--CCCCEEEEEEC-------CC
Q 019847 16 DYYSKVIDWGRN----NVLAVA--LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS--HDAKTLAVGYM-------DS 80 (335)
Q Consensus 16 ~~~~~~~~~~~~----~~~~~~--~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~-------dg 80 (335)
|..-..+++.++ +++... .+..|...+++.-+..+++.++. ...+..++|- |+..|+++++. ||
T Consensus 127 D~HHp~~S~tdg~yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn-~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg 205 (638)
T 3sbq_A 127 DCHHPHISMTDGKYDGKYLFINDKANSRVARIRLDIMKCDKMITVPN-VQAIHGLRLQKVPHTKYVFANAEFIIPHPNDG 205 (638)
T ss_dssp CCCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTT-CSCEEEEEECCSSBCCEEEEEECSCEESSCSS
T ss_pred CcCCCcccccCCeeeeEEEEEecCCCcceEEEECCcEeeceeEeCCC-CcCcccccccccCCccEEEecceeeccCCCCC
Confidence 333444565542 444444 45688888999988888888764 5668888886 78889988864 33
Q ss_pred cEE---------E---EeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCC---------------CcEEEEec---
Q 019847 81 KLQ---------L---WDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD---------------KSIINHDV--- 130 (335)
Q Consensus 81 ~i~---------i---w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------------g~i~~~d~--- 130 (335)
... + .|.++.+...++.. ......+...+ ++.+.++.+.+ -.+.++|+
T Consensus 206 ~~~~~~~~~~y~~f~~iD~~tm~v~~Qv~v-~gnld~~~~~~-~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~i 283 (638)
T 3sbq_A 206 KVFDLQDENSYTMYNAIDAETMEMAFQVIV-DGNLDNTDADY-TGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAV 283 (638)
T ss_dssp SCCCTTSTTEEEEEEEEETTTCSEEEEEEE-SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHH
T ss_pred cccccCChhhceEEEEEcCCccEEEEEEEc-CCChhhcCCCC-CCCEEEEeeeccccCcChhhcCcccccEEEEecHHHH
Confidence 310 1 12222222222110 11222233334 44555544322 12444443
Q ss_pred ----------------------cc----CCeeeEEeecCCCCEEEEEeecCCCEEEEEe-CCCeEEEEEccCCCc-----
Q 019847 131 ----------------------RV----SNNVTSCIKAHSGEVCGLKWSNEGNLLASGG-DDNVVRIWERSKMSS----- 178 (335)
Q Consensus 131 ----------------------~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~----- 178 (335)
+. ...+.. +-.-......+..+|||++++.++ .+.++.++|++....
T Consensus 284 e~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~-~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k 362 (638)
T 3sbq_A 284 EAAVKAGDFITLGDSKTPVLDGRKKDGKDSKFTR-YVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGK 362 (638)
T ss_dssp HHHHHTTCCBCCTTCCCCEEECSCBTTBCCSSEE-EEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTC
T ss_pred HHHHhcCCeEEECCCCeeEEccccccccCCceEE-EEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcc
Confidence 22 111111 111223345678899999988876 467899999874211
Q ss_pred ----ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC----------ceEEEeecCCcEeEEEe---
Q 019847 179 ----SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG----------TCIHGIDAKAQICGLEW--- 241 (335)
Q Consensus 179 ----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~----------~~~~~~~~~~~~~~~~~--- 241 (335)
...+.....-.......+|.++| +.+++-- .|..|.-|++... ..+..+..+..+-.+.-
T Consensus 363 ~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlf--idSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~g 439 (638)
T 3sbq_A 363 LADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLF--IDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLC 439 (638)
T ss_dssp CSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEET--TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTT
T ss_pred ccCcccceEeeccCCCcccEEEECCCC-ceEeeee--ecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCC
Confidence 01111111123446778999998 6667665 8999999998653 45666776666555543
Q ss_pred ---CCCCceeeeeee
Q 019847 242 ---NRHHKEILSGHG 253 (335)
Q Consensus 242 ---~~~~~~~~~~~~ 253 (335)
.|+|++|++.+.
T Consensus 440 et~~~dGk~lv~lnK 454 (638)
T 3sbq_A 440 ETNEADGKWLVALSK 454 (638)
T ss_dssp TSTTCCSCEEEEEES
T ss_pred ccCCCCccEEEEecc
Confidence 688888887643
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=95.51 E-value=0.68 Score=36.46 Aligned_cols=223 Identities=13% Similarity=0.072 Sum_probs=115.2
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE
Q 019847 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC 139 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 139 (335)
.|..++.... ..+.-. ||.|..|-......+..-......|..++... ...++. . ||.++.|-.....++-.
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~- 96 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTV- 96 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCC-
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCC-
Confidence 5777766433 222234 89999997654322211111234677776642 334444 4 99999998765443211
Q ss_pred eecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEE
Q 019847 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIW 219 (335)
Q Consensus 140 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~ 219 (335)
...-...|..++...+ +.+.-. ||.|+.|-........ ........|..++.-... .++. .||.++.|
T Consensus 97 P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg---~~~~~~~~i~~i~~G~~~--~~~l----~~G~v~~w 164 (282)
T 3qhy_B 97 PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT---VPAEAQSGVTALDGGVYT--ALAV----KNGGVIAW 164 (282)
T ss_dssp CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS---CCGGGGSSEEEEEECSSE--EEEE----ETTEEEEE
T ss_pred CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC---CCccCCCCeEEEEcccCE--EEEE----ECCEEEEe
Confidence 1112346777776644 344445 9999999865422211 111123456666654432 2332 36888888
Q ss_pred ECCC-CceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEE
Q 019847 220 NVQK-GTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVAT 298 (335)
Q Consensus 220 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 298 (335)
-... ++.-........+..++.-......+ ++|.+..|-......+..-......|..++...+....
T Consensus 165 G~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---------~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~a-- 233 (282)
T 3qhy_B 165 GDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---------KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLA-- 233 (282)
T ss_dssp ECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---------ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEE--
T ss_pred cCCCCCCCCCceecCCCeEEEEecCCEEEEE---------ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEE--
Confidence 6543 22211111123455554433222221 38999999765433222111112357777765554333
Q ss_pred EeCCCcEEEEecCCCC
Q 019847 299 AGADETIRFWEAFGPS 314 (335)
Q Consensus 299 ~~~dg~v~iw~~~~~~ 314 (335)
-. ||.|..|=.....
T Consensus 234 l~-~g~v~~wG~n~~g 248 (282)
T 3qhy_B 234 LK-NGKVIAWGSSRTA 248 (282)
T ss_dssp EE-TTEEEEESTTCCC
T ss_pred EE-CCEEEEecCCCCc
Confidence 33 8999999766543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.47 E-value=1 Score=38.26 Aligned_cols=107 Identities=11% Similarity=0.183 Sum_probs=60.7
Q ss_pred cceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee-eEEeec------CCCCEEEEEeecC---CCEEEEEeC------
Q 019847 101 RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV-TSCIKA------HSGEVCGLKWSNE---GNLLASGGD------ 164 (335)
Q Consensus 101 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~------~~~~i~~~~~~~~---~~~l~~~~~------ 164 (335)
...+.++|.| +++++++-...+.|++++...+... ...+.. .......|+|+|+ +..|..+..
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4567999999 8887776544457888876533321 111111 2456789999995 555554432
Q ss_pred -------CCeEEEEEccCCC----ccccee-ecc-CCCCCeeEEEecCCCCcEEEEe
Q 019847 165 -------DNVVRIWERSKMS----SSKSLH-RFT-DHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 165 -------dg~i~iwd~~~~~----~~~~~~-~~~-~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
...|.-+++.... ..+.+. .+. ........|+|.|+|..+++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2356666654321 111121 121 1123468999999997555554
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.25 E-value=1 Score=36.84 Aligned_cols=225 Identities=10% Similarity=0.054 Sum_probs=116.5
Q ss_pred cceeeeecCC-c-eEEEecCCeEEEEEecCCceee-EEee----cCCCCCceEEEEcCC---CCEEEEEE-C-------C
Q 019847 18 YSKVIDWGRN-N-VLAVALGPVLFLWKWENGKVKK-LLQV----PGEDDYPTSVSWSHD---AKTLAVGY-M-------D 79 (335)
Q Consensus 18 ~~~~~~~~~~-~-~~~~~~~~~i~vw~~~~~~~~~-~~~~----~~~~~~v~~~~~~~~---~~~l~~~~-~-------d 79 (335)
....|+|.++ + ++++...+.|++++.+ ++... ...+ .........++++|+ +.+|.++. . .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 3456888874 6 7888788999999843 33211 1111 112345689999996 45555443 2 2
Q ss_pred CcEEEEeCCCc--e--eEe----eecc---cccceeEeeecCCCCCEEEEeeCC-------------CcEEEEecccCC-
Q 019847 80 SKLQLWDAETS--K--LVR----NLEG---HHRRVATSSWNHWNGHILTSGSKD-------------KSIINHDVRVSN- 134 (335)
Q Consensus 80 g~i~iw~~~~~--~--~~~----~~~~---~~~~v~~~~~~~~~~~~l~~~~~d-------------g~i~~~d~~~~~- 134 (335)
..|..+++... + ..+ .+.. .......+.|.| ++.+.++-+.. |.|.-++....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 35666666432 1 111 1111 111245799999 88766665432 456666654220
Q ss_pred -----------eeeEEeecCCCCEEEEEeec-CCCEEEEEeCCC--eEEEEEccCCCc----------------------
Q 019847 135 -----------NVTSCIKAHSGEVCGLKWSN-EGNLLASGGDDN--VVRIWERSKMSS---------------------- 178 (335)
Q Consensus 135 -----------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg--~i~iwd~~~~~~---------------------- 178 (335)
.......++ .....++|.| ++++++ +.... .=.|.-+..+..
T Consensus 177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~-~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWL-NEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEE-EEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEE-EecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 111111223 3467899999 555444 33221 112221211110
Q ss_pred ------ccceeeccCCCCCeeEEEecC-------CCCcEEEEecCCCCCeEEEEECCCCceEEEee----cCCcEeEEEe
Q 019847 179 ------SKSLHRFTDHCGGVKALAWSP-------HQVNVLATGGGREDGCIKIWNVQKGTCIHGID----AKAQICGLEW 241 (335)
Q Consensus 179 ------~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~~~ 241 (335)
..++..+. +...+..+.|.. ++ .++++.- ..+.|...++..++...... ....+..+++
T Consensus 255 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g-~l~v~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~ 330 (353)
T 2g8s_A 255 EIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQ-KLFIGAL--KDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRT 330 (353)
T ss_dssp SSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTT-EEEEEET--TTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEE
T ss_pred CCCCCccCCeEEeC-CCcCcceeEEECCccCcccCC-cEEEEEc--cCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEE
Confidence 01111112 223466777764 34 4555543 57888888887665433221 1346888999
Q ss_pred CCCCceeee
Q 019847 242 NRHHKEILS 250 (335)
Q Consensus 242 ~~~~~~~~~ 250 (335)
.|+|...++
T Consensus 331 ~pdG~lyv~ 339 (353)
T 2g8s_A 331 GPDGYLYVL 339 (353)
T ss_dssp CTTSCEEEE
T ss_pred CCCCcEEEE
Confidence 999876554
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=95.23 E-value=1.3 Score=37.81 Aligned_cols=106 Identities=15% Similarity=0.163 Sum_probs=60.3
Q ss_pred CceEEEEcCCCC-EEEEEECCCcEEEEeCCCce---eEeeec---------ccccceeEeeecCC---CCCEEEEeeCC-
Q 019847 60 YPTSVSWSHDAK-TLAVGYMDSKLQLWDAETSK---LVRNLE---------GHHRRVATSSWNHW---NGHILTSGSKD- 122 (335)
Q Consensus 60 ~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~---~~~~~~---------~~~~~v~~~~~~~~---~~~~l~~~~~d- 122 (335)
....|+|.|+|. .|+++...|.|++++..... .+..+. ........++++|. ++.+.++-+.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 468999999996 56666789999999754221 112111 11456788999882 24444443321
Q ss_pred -----------CcEEEEecccC----------CeeeEEee-cCCCCEEEEEeecCCCEEEEEeCC
Q 019847 123 -----------KSIINHDVRVS----------NNVTSCIK-AHSGEVCGLKWSNEGNLLASGGDD 165 (335)
Q Consensus 123 -----------g~i~~~d~~~~----------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d 165 (335)
..|.-|.+... +.+..... .....-..|+|.|||.+.++.+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 13444554321 11222111 112346789999999877776643
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=93.23 E-value=3.8 Score=38.56 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=32.7
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec
Q 019847 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 97 (335)
.+.+++..++..++++-+.|+++|+|++.+++++....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46777778888899999999999999999999887643
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=92.92 E-value=3.4 Score=34.13 Aligned_cols=208 Identities=8% Similarity=-0.041 Sum_probs=98.3
Q ss_pred CceEEEecCCeEEEEEecC--CceeeEEeecCCCCCceEEEEcC-CCCEEEEEECCC----cEEEEeCCCceeEeeec--
Q 019847 27 NNVLAVALGPVLFLWKWEN--GKVKKLLQVPGEDDYPTSVSWSH-DAKTLAVGYMDS----KLQLWDAETSKLVRNLE-- 97 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~--~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~-- 97 (335)
+.+++++..| +.+++-+. ......... .....|.++++.| +...|.+++..| .|...+ ..++.-..+.
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 4566666655 66666543 233322111 2245699999998 334455555454 344332 2222111111
Q ss_pred ----c--------cccceeEeeecCCC-CCEEEEeeCCCcEEEEecccCCeeeEEee-------------------cCCC
Q 019847 98 ----G--------HHRRVATSSWNHWN-GHILTSGSKDKSIINHDVRVSNNVTSCIK-------------------AHSG 145 (335)
Q Consensus 98 ----~--------~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-------------------~~~~ 145 (335)
. ....|.++++.|.+ ...+.++...+.|...+ .+........ ....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~--DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST--DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES--STTSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc--CCCCCeEECcCccCCccccccccccccCCCCCC
Confidence 0 11257788888744 56667666666554443 2221111111 1223
Q ss_pred CEEEEEeec-CCCEEEEEeCCCeEEEEEccCCCcccceee-ccC-C--------CCCeeEEEecCCCCcEEEEecCCCCC
Q 019847 146 EVCGLKWSN-EGNLLASGGDDNVVRIWERSKMSSSKSLHR-FTD-H--------CGGVKALAWSPHQVNVLATGGGREDG 214 (335)
Q Consensus 146 ~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~-~--------~~~v~~~~~~~~~~~~~~~~~g~~d~ 214 (335)
.+.+|.+.| +...+..+..++.|...+- .+...+.+.. ... + ...+.++.++|.....+.++. .+
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~---~~ 253 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN---HC 253 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE---TT
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc---CC
Confidence 578899988 3445555554554544321 1222222211 000 0 124788999987444444443 34
Q ss_pred eEEEEECCCCceEEEeec--C----CcEeEEEeCCC
Q 019847 215 CIKIWNVQKGTCIHGIDA--K----AQICGLEWNRH 244 (335)
Q Consensus 215 ~i~i~d~~~~~~~~~~~~--~----~~~~~~~~~~~ 244 (335)
.|...+ ..++.-..+.. . ..+..+.++|.
T Consensus 254 gl~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 254 GIYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp EEEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred eEEEeC-CCCCcceECCCCCCCCCccceEEEEECCC
Confidence 455444 22333333221 1 23456777764
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=92.14 E-value=3.5 Score=32.36 Aligned_cols=239 Identities=13% Similarity=0.113 Sum_probs=123.7
Q ss_pred cceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec
Q 019847 18 YSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97 (335)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 97 (335)
.+..++-.....++.. |+.|+.|-....-..-. .. .....|..++..... .++. . ||.|..|-......+..-.
T Consensus 25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~-p~-~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM-PA-ATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSC-CG-GGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCC-Cc-cCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 5677777777777776 99999998654221111 00 112357777765433 2333 4 8999999765422211111
Q ss_pred ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCC
Q 019847 98 GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMS 177 (335)
Q Consensus 98 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 177 (335)
.-...|..++... ...+.-. +|.|+.|-.....++-. .......|..++...+ +.+.-. ||.|+.|-.....
T Consensus 99 ~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~-~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 99 EARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTV-PAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFG 170 (282)
T ss_dssp GGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTS
T ss_pred ccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCC-CccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCC
Confidence 1134677776643 3334445 99999998765443211 1122345777765443 233334 7999999765422
Q ss_pred cccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC-ceEEEeecCCcEeEEEeCCCCceeeeeeeeee
Q 019847 178 SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG-TCIHGIDAKAQICGLEWNRHHKEILSGHGFSA 256 (335)
Q Consensus 178 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (335)
... ........|..++.-... .++. . ||.++.|=.... ++-...+....+..++.-..... +
T Consensus 171 qlg---~p~~~~~~v~~i~~G~~h--s~al-~---~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~--------a 233 (282)
T 3qhy_B 171 QTT---VPAEAQSGVDDVAGGIFH--SLAL-K---DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSL--------A 233 (282)
T ss_dssp TTS---CCGGGGSSEEEEEECSSE--EEEE-E---TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEE--------E
T ss_pred CCC---CceecCCCeEEEEecCCE--EEEE-E---CCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEE--------E
Confidence 211 111113457777665443 3333 3 889999965432 22111111223444433222111 1
Q ss_pred ecCCCeEEEEECCCCceeecccCCCCceeEeEEcCC
Q 019847 257 SGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 257 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
-. +|.+..|-.....++.. ...|.+++....
T Consensus 234 l~-~g~v~~wG~n~~gq~~v----~~~v~~iaaG~~ 264 (282)
T 3qhy_B 234 LK-NGKVIAWGSSRTAPSSV----QSGVSSIEAGPN 264 (282)
T ss_dssp EE-TTEEEEESTTCCCCGGG----SSCEEEEEECSS
T ss_pred EE-CCEEEEecCCCCccccC----CCCcEEEEECcC
Confidence 24 88999997665544332 124555555444
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=91.74 E-value=7.5 Score=36.59 Aligned_cols=38 Identities=11% Similarity=0.259 Sum_probs=31.1
Q ss_pred CeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee
Q 019847 191 GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID 231 (335)
Q Consensus 191 ~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 231 (335)
.+.+++..++...+++.+ .|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~---~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLS---LDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEE---TTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEE---CCCEEEEEECCCCCeEeeec
Confidence 466777777777777776 79999999999999988765
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=90.84 E-value=6.9 Score=33.27 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=60.2
Q ss_pred cceeEeeecCCCCC-EEEEeeCCCcEEEEecccCC--eeeEEe----e-----cCCCCEEEEEeecC----CCEEEEEeC
Q 019847 101 RRVATSSWNHWNGH-ILTSGSKDKSIINHDVRVSN--NVTSCI----K-----AHSGEVCGLKWSNE----GNLLASGGD 164 (335)
Q Consensus 101 ~~v~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~--~~~~~~----~-----~~~~~i~~~~~~~~----~~~l~~~~~ 164 (335)
...+.|+|.| ++. .|+++...|.|++++..... .....+ . ........|+++|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~p-dG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSG-DGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCS-SSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECC-CCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 4667899999 775 45566788999999754221 111111 1 11457889999996 444343332
Q ss_pred C------------CeEEEEEccCCC-------cccceeecc--CCCCCeeEEEecCCCCcEEEEec
Q 019847 165 D------------NVVRIWERSKMS-------SSKSLHRFT--DHCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 165 d------------g~i~iwd~~~~~-------~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
+ ..|.-|.+.... ..+.+..+. .....-..|.|.|||..+++++.
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 145556654311 112222221 12234678999999976666653
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.11 E-value=3 Score=40.17 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec
Q 019847 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 97 (335)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44566677788899999999999999999999887643
|
| >3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A | Back alignment and structure |
|---|
Probab=87.40 E-value=5.3 Score=35.88 Aligned_cols=81 Identities=14% Similarity=0.083 Sum_probs=50.0
Q ss_pred cccceeeeecCCceEEEecCCeEEEEEecCCceeeEEee-------------cC-----CCCCceEEEEcCCCCEEEEEE
Q 019847 16 DYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQV-------------PG-----EDDYPTSVSWSHDAKTLAVGY 77 (335)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~-------------~~-----~~~~v~~~~~~~~~~~l~~~~ 77 (335)
..+...++.+++.++++-.||.+.-.+.+.........+ .+ ....|.++.+ +..++++-+
T Consensus 161 R~Ph~L~avs~~~liVsL~DGGLLrL~r~~~~d~~~~~Fnd~s~l~SL~~lf~~~~~~~~~~~Is~~~~--~~~fLftL~ 238 (729)
T 3f7f_A 161 RVPHFLFYVSPQFSVVFLEDGGLLGLKKVDGVHYEPLLFNDNSYLKCLTRFFSRSSKSDYDSVISCKLF--HERYLIVLT 238 (729)
T ss_dssp SCEEEEEECSSSBEEEEETTSCEECCEESSSSCEECCCCCCCGGGGGGSTTCCTTCSSCCCCEEEEEEE--TTTEEEEEE
T ss_pred cCCcEEEEECCCeEEEEEcCCCEEEEEeccCCCcceeeecCCchhhhhHHhhcCCCCCCcCceEEEecc--CCcEEEEEE
Confidence 344455666777777777777665555443221111111 11 1123444444 577999999
Q ss_pred CCCcEEEEeCCCceeEeeecc
Q 019847 78 MDSKLQLWDAETSKLVRNLEG 98 (335)
Q Consensus 78 ~dg~i~iw~~~~~~~~~~~~~ 98 (335)
.|.++|+|++.+++++....-
T Consensus 239 ~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 239 QNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TTCEEEEEETTTTEEEEEEET
T ss_pred cCCeEEEEEcCCCceEEeecc
Confidence 999999999999998877653
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.23 E-value=11 Score=31.00 Aligned_cols=270 Identities=13% Similarity=0.145 Sum_probs=122.2
Q ss_pred cCCceEEEecCCeEEEEEecC-Cce-------eeE-EeecC-CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc----
Q 019847 25 GRNNVLAVALGPVLFLWKWEN-GKV-------KKL-LQVPG-EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS---- 90 (335)
Q Consensus 25 ~~~~~~~~~~~~~i~vw~~~~-~~~-------~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---- 90 (335)
....+++...||.|+.|=... +++ ... ..... ....|..++- .....+.-..||.|..|-....
T Consensus 9 ~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG 86 (389)
T 3kci_A 9 SGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLG 86 (389)
T ss_dssp ------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTS
T ss_pred CcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCC
Confidence 445677778899999996543 211 111 01000 0112333432 3445555567888998864321
Q ss_pred -------eeEeeecc-cccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee----------eEEeec-CCCCEEEEE
Q 019847 91 -------KLVRNLEG-HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV----------TSCIKA-HSGEVCGLK 151 (335)
Q Consensus 91 -------~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----------~~~~~~-~~~~i~~~~ 151 (335)
.....+.. ....+..++.+. .....+.-..||.|+.|-.....++ ...... ....|..++
T Consensus 87 ~g~~~~~~~p~~v~~~~~~~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va 165 (389)
T 3kci_A 87 IGGTESVSTPTLLESIQHVFIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVA 165 (389)
T ss_dssp SSSSCCEEEEEECGGGTTSCEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE
T ss_pred CCCcCCccCCEEcccccCCceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEE
Confidence 11111211 112344455555 5566677788999999965432110 111111 123566665
Q ss_pred eecCCCEEEEEeCCCeEEEEEccCCCc---------ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECC
Q 019847 152 WSNEGNLLASGGDDNVVRIWERSKMSS---------SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ 222 (335)
Q Consensus 152 ~~~~~~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 222 (335)
.. ..+.+.-..||.|+.|-...... ..+..........|..++........++.. .||.|+.|-..
T Consensus 166 ~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~---~~G~v~~wG~n 240 (389)
T 3kci_A 166 AG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT---DDDTVWSWGDG 240 (389)
T ss_dssp EC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEE---TTTEEEEEECC
T ss_pred eC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEc---cCCEEEEEeCC
Confidence 43 34566667899999997432110 001111111223466666544222344443 68999999643
Q ss_pred CC-c---------e-EEEeec--CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee-----------eccc
Q 019847 223 KG-T---------C-IHGIDA--KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV-----------GELQ 278 (335)
Q Consensus 223 ~~-~---------~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~-----------~~~~ 278 (335)
.. + . ...++. ...+..++.-..... +-..+|.|..|-....-.+ ..+.
T Consensus 241 ~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~--------alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~ 312 (389)
T 3kci_A 241 DYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSV--------ALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 312 (389)
T ss_dssp GGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEE--------EEETTSCEEEEECCGGGTTCSSSCCCEEEEEECG
T ss_pred CCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEE--------EEeCCCeEEEEeCCCCCCCCCCCCccccCCeEec
Confidence 21 1 0 011111 112444433222221 2256899999975431111 1111
Q ss_pred C-CCCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 279 S-SNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 279 ~-~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
. ....|..++.... ..+....||.|+.|=...
T Consensus 313 ~l~~~~v~~ia~G~~--h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 313 GLQGKKVIAIATGSL--HCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp GGTTCCEEEEEECSS--EEEEEETTCCEEEEECCT
T ss_pred cCCCCCEEEEEeccC--eEEEECCCCCEEEeeCCC
Confidence 1 1124555555333 455567899999997654
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=86.44 E-value=10 Score=29.62 Aligned_cols=143 Identities=10% Similarity=0.022 Sum_probs=88.1
Q ss_pred CCceEEEecCCeEEE---EEecCCceeeEEeecCCCCCceEEEEcC--CCCEEEEEECCCcEEEEeCCCc------eeEe
Q 019847 26 RNNVLAVALGPVLFL---WKWENGKVKKLLQVPGEDDYPTSVSWSH--DAKTLAVGYMDSKLQLWDAETS------KLVR 94 (335)
Q Consensus 26 ~~~~~~~~~~~~i~v---w~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~------~~~~ 94 (335)
.+.++..+..|.++- |++..+.... + +. ....|..+.. + +..+++..+.+|.++-..+..- ....
T Consensus 35 ~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l-l~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i 110 (276)
T 3no0_A 35 TEGLFLVSNRGRVYWIAGSQALQGSKVS-L-KS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPII 110 (276)
T ss_dssp TSCEEEEETTSEEEEECSHHHHTSEECC-C-SS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECS
T ss_pred CCEEEEEcCCCeEEEEEhhhCccCcccc-c-CC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEE
Confidence 357888888887665 3443332222 3 43 3556766644 4 5678999999999999986542 2222
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe--------eeEEeecCCCCEEEEEeecCCCEEEEEeCCC
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN--------VTSCIKAHSGEVCGLKWSNEGNLLASGGDDN 166 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 166 (335)
.++. .+.+..+.... ....++..+..|.+..+....-.. ....+. ....|..+...+++..++..+..|
T Consensus 111 ~lke-gD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G 187 (276)
T 3no0_A 111 KLTE-GDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLLVITAKG 187 (276)
T ss_dssp CCCT-TCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEEEEETTS
T ss_pred ecCC-CCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCC
Confidence 2332 24455554444 556788888899988887643111 011121 235566666556667888999999
Q ss_pred eEEEEEccC
Q 019847 167 VVRIWERSK 175 (335)
Q Consensus 167 ~i~iwd~~~ 175 (335)
.++...+..
T Consensus 188 ~~kr~~~~e 196 (276)
T 3no0_A 188 RVKKISHEE 196 (276)
T ss_dssp CEEEEEGGG
T ss_pred cEEEeEHHH
Confidence 999988764
|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=83.70 E-value=15 Score=29.26 Aligned_cols=231 Identities=10% Similarity=0.057 Sum_probs=119.5
Q ss_pred CCCCEEEEEECCCcEEEEeCCCcee-------Ee--eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee--
Q 019847 68 HDAKTLAVGYMDSKLQLWDAETSKL-------VR--NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV-- 136 (335)
Q Consensus 68 ~~~~~l~~~~~dg~i~iw~~~~~~~-------~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-- 136 (335)
|+..++++.+.+|.|+--.+..-+. +. .++. .+.+..+.... ..+.++..+..|.++-+....-...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 4667888899999998886643211 11 1222 23344444444 5566777788888777665321110
Q ss_pred ---------eEEeecCCCCEEEEEeec---CCCEEEEEeCCCeEEEEEccCCCc----ccceeeccCCCCCeeEEEecCC
Q 019847 137 ---------TSCIKAHSGEVCGLKWSN---EGNLLASGGDDNVVRIWERSKMSS----SKSLHRFTDHCGGVKALAWSPH 200 (335)
Q Consensus 137 ---------~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~ 200 (335)
...+. ....|..+...+ ++.+++..+..|.++...+..... +.....+.. .+.+..+.....
T Consensus 84 ~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~ 161 (312)
T 1suu_A 84 ASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFK 161 (312)
T ss_dssp ----CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECT
T ss_pred cCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCC
Confidence 00011 223455554332 467788899999999988765322 111222332 445555555444
Q ss_pred CCcEEEEecCCCCCeEEEEECCC---------CceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC
Q 019847 201 QVNVLATGGGREDGCIKIWNVQK---------GTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM 271 (335)
Q Consensus 201 ~~~~~~~~~g~~d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~ 271 (335)
+..++... .+|.+..+.... |.....+..+..+..+..-.++..++.. +..|..+..++...
T Consensus 162 ~~~i~l~T---~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~v------t~~G~~kr~~~~e~ 232 (312)
T 1suu_A 162 DEKVICLS---KKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIV------SENGYGKRLNMSKI 232 (312)
T ss_dssp TCEEEEEE---TTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEE------ETTSEEEEEEGGGS
T ss_pred CCEEEEEe---CCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEE------ECCCceEEEEHHHh
Confidence 44455544 689888887643 1222223334455555544444444433 56788888776432
Q ss_pred c---------eeeccc-CCCCceeEe-EEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 272 T---------KVGELQ-SSNSRILDL-SQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 272 ~---------~~~~~~-~~~~~i~~~-~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
. ....+. .....+..+ .+.++ .-+...+..|.+.-.....
T Consensus 233 ~~~~R~~kGv~~~~~~k~~~~~lv~~~~~~~~-~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 233 SELKRGATGYTSYKKSDKKAGSVVDAIAVSED-DEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp CBCCTTCCCEECSCTTCTTTCSEEEEEEECTT-CEEEEEETTCEEEEEEGGG
T ss_pred cccCCCCCCEEeeEccCCCCCeEEEEEEeCCC-CEEEEEeCCCeEEEEEccc
Confidence 1 111222 222344333 44444 4455556667554444443
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.44 E-value=19 Score=29.60 Aligned_cols=196 Identities=12% Similarity=0.104 Sum_probs=105.6
Q ss_pred cceeeeecCCceEEEecCCeEEEEEecCC-c--------eeeEEeecC-CCCCceEEEEcCCCCEEEEEECCCcEEEEeC
Q 019847 18 YSKVIDWGRNNVLAVALGPVLFLWKWENG-K--------VKKLLQVPG-EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDA 87 (335)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~i~vw~~~~~-~--------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 87 (335)
.+..++-.....++...+|.|+.|=.... + ......++. ....+..++++......++-..||.|..|-.
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~ 133 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE 133 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC
Confidence 34556656667788889999999964321 1 111111111 2234555677766677777788999999964
Q ss_pred CCc-----------eeEeeeccc-ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe-----------eeEEeecCC
Q 019847 88 ETS-----------KLVRNLEGH-HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN-----------VTSCIKAHS 144 (335)
Q Consensus 88 ~~~-----------~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-----------~~~~~~~~~ 144 (335)
... .....+... ...|..++. .....++-..+|.|+.|-.....+ +........
T Consensus 134 n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~ 210 (389)
T 3kci_A 134 AEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG 210 (389)
T ss_dssp CGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT
T ss_pred CCCCcCCCCCCccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC
Confidence 321 111112211 124555555 455666667899999997543211 111111123
Q ss_pred CCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcc---------cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe
Q 019847 145 GEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSS---------KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215 (335)
Q Consensus 145 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 215 (335)
..|..++......+.+.-..||.|+.|-....... .+..........|..++.-... .++.. .+|.
T Consensus 211 ~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~h--s~alt---~~G~ 285 (389)
T 3kci_A 211 HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQF--SVALT---KSGA 285 (389)
T ss_dssp SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTE--EEEEE---TTSC
T ss_pred CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCE--EEEEe---CCCe
Confidence 45666765543356666778999999964321110 0111111112246666654432 33333 6899
Q ss_pred EEEEEC
Q 019847 216 IKIWNV 221 (335)
Q Consensus 216 i~i~d~ 221 (335)
|+.|=.
T Consensus 286 v~~wG~ 291 (389)
T 3kci_A 286 VYTWGK 291 (389)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999965
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=80.33 E-value=23 Score=29.09 Aligned_cols=174 Identities=6% Similarity=-0.044 Sum_probs=84.5
Q ss_pred CCEEEEEECCCcEEEEeCCC-ceeEeee--cccccceeEeeecCCCCCEEEEeeCCC----cEEEEecccCCeeeEEee-
Q 019847 70 AKTLAVGYMDSKLQLWDAET-SKLVRNL--EGHHRRVATSSWNHWNGHILTSGSKDK----SIINHDVRVSNNVTSCIK- 141 (335)
Q Consensus 70 ~~~l~~~~~dg~i~iw~~~~-~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~~~d~~~~~~~~~~~~- 141 (335)
...|.+|+..| +.+++... ++.-... ......|.++.+.|.+...+.++...| .|... ...........
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s--~D~G~tW~~~~~ 98 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS--DDGGGNWTEATR 98 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE--SSTTSCCEECSB
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe--CCCCCCceECCc
Confidence 34677787777 55555432 2211111 123457999999885566666666555 34333 22221111111
Q ss_pred -----c--------CCCCEEEEEeec-C-CCEEEEEeCCCeEEEEEccCCCcccceeecc----------------CCCC
Q 019847 142 -----A--------HSGEVCGLKWSN-E-GNLLASGGDDNVVRIWERSKMSSSKSLHRFT----------------DHCG 190 (335)
Q Consensus 142 -----~--------~~~~i~~~~~~~-~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------~~~~ 190 (335)
. ....|.++++.| + ...+.++...+.|...+-. +...+.+.... ....
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCC
Confidence 0 112477888887 2 4556666666666554311 22222222111 1223
Q ss_pred CeeEEEecCCC-CcEEEEecCCCCCeEEEEECCCCceEEEeec--------------CCcEeEEEeCCCC-ceeeee
Q 019847 191 GVKALAWSPHQ-VNVLATGGGREDGCIKIWNVQKGTCIHGIDA--------------KAQICGLEWNRHH-KEILSG 251 (335)
Q Consensus 191 ~v~~~~~~~~~-~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--------------~~~~~~~~~~~~~-~~~~~~ 251 (335)
.+.++.++|.. ..+++.. .++.|...+ ..++.-..+.. ...+..+.++|.. ..+..+
T Consensus 178 ~i~~i~~d~~~~~~l~vg~---~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg 250 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGM---SSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQ 250 (394)
T ss_dssp EEEEEEECTTCTTCEEEEE---ETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEE
T ss_pred ceeEEEECCCCCCEEEEEE---CCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEE
Confidence 57889998853 3455443 244444332 22322222211 1247888888863 444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 335 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-25 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-11 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-21 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-20 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.003 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-18 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-16 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-13 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-13 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-12 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-12 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-09 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-11 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.001 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-11 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-09 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.001 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.004 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-09 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-08 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-09 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 7e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 5e-06 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.003 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 102 bits (254), Expect = 1e-25
Identities = 63/313 (20%), Positives = 110/313 (35%), Gaps = 69/313 (22%)
Query: 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW---- 111
G T V + + D+ +++WD ET R L+GH V S++H
Sbjct: 15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74
Query: 112 -------------------------------------NGHILTSGSKDKSIINHDVRVSN 134
NG + S S+DK+I +V+ +
Sbjct: 75 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-TG 133
Query: 135 NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKA 194
H V ++ + +G L+AS +D VR+W +++ + +H V+
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV---VATKECKAELREHRHVVEC 190
Query: 195 LAWSPHQVNVLATGG-----------------GREDGCIKIWNVQKGTCIHGIDA-KAQI 236
++W+P + G D IK+W+V G C+ + +
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250
Query: 237 CGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTV 296
G+ ++ K ILS D L +W Y N + L + + L V
Sbjct: 251 RGVLFHSGGKFILSC------ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304
Query: 297 ATAGADETIRFWE 309
T D+T++ WE
Sbjct: 305 VTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.5 bits (150), Expect = 1e-11
Identities = 20/169 (11%), Positives = 54/169 (31%), Gaps = 11/169 (6%)
Query: 140 IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSP 199
+ H V + + +++ S +D +++W+ + H V+ +++
Sbjct: 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD---YETGDFERTLKGHTDSVQDISFDH 69
Query: 200 HQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGD 259
+ + + +HG D + +G ++
Sbjct: 70 SGKLLASCSADMTIKLWDFQGFECIRTMHGHD--------HNVSSVSIMPNGDHIVSASR 121
Query: 260 GNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
+ +W+ V + + + DG +A+ D+T+R W
Sbjct: 122 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 170
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.9 bits (133), Expect = 2e-09
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 38 LFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97
+ +W G L G D++ V + K + D L++WD + + ++ L
Sbjct: 229 IKMWDVSTGMCLMTLV--GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 286
Query: 98 GHHRRVATSSWNHWNGHILTSGSKDKSI 125
H V + + H + +GS D+++
Sbjct: 287 AHEHFVTSLDF-HKTAPYVVTGSVDQTV 313
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.4 bits (98), Expect = 4e-05
Identities = 22/130 (16%), Positives = 48/130 (36%), Gaps = 8/130 (6%)
Query: 179 SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICG 238
+ + H V + + P +V+ + ED IK+W+ + G +
Sbjct: 7 PPEKYALSGHRSPVTRVIFHPVF-SVMVSAS--EDATIKVWDYETGDFERTLKGHTDSVQ 63
Query: 239 LEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVAT 298
H ++L+ + LW + + + + + +S P+G + +
Sbjct: 64 DISFDHSGKLLASCSAD-----MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 118
Query: 299 AGADETIRFW 308
A D+TI+ W
Sbjct: 119 ASRDKTIKMW 128
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 92.1 bits (227), Expect = 1e-21
Identities = 55/306 (17%), Positives = 107/306 (34%), Gaps = 56/306 (18%)
Query: 47 KVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATS 106
+ ++ L+ G ++ W D++ L D KL +WD+ T+ V + V T
Sbjct: 46 RTRRTLR--GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 107 SWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSG--------------------- 145
++ +G+ + G D ++++ + +G
Sbjct: 104 AY-APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 146 -----------------------EVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL 182
+V L + + L SG D ++W+ +
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD---VREGMCR 219
Query: 183 HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWN 242
FT H + A+ + P+ N ATG +D ++++++ + ICG+
Sbjct: 220 QTFTGHESDINAICFFPNG-NAFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSV 276
Query: 243 RHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302
K SG A D +W + G L ++R+ L + DG+ VAT D
Sbjct: 277 SFSK---SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Query: 303 ETIRFW 308
++ W
Sbjct: 334 SFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 89.0 bits (219), Expect = 1e-20
Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 8/156 (5%)
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
+ D + G D+ +LWD + GH + + NG+ +GS D +
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATC 250
Query: 126 -INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHR 184
+ +T + + +S G LL +G DD +W+ +
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD---ALKADRAGV 307
Query: 185 FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWN 220
H V L + +ATG D +KIWN
Sbjct: 308 LAGHDNRVSCLGVTDDG-MAVATGS--WDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.0 bits (84), Expect = 0.003
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 38 LFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWD 86
+W +L G D+ + + + D +A G DS L++W+
Sbjct: 294 CNVWDALKADRAGVLA--GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 83.7 bits (205), Expect = 1e-18
Identities = 57/286 (19%), Positives = 100/286 (34%), Gaps = 22/286 (7%)
Query: 41 WKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH 100
++ + P D Y SV +S D K LA G D +++WD E K+V H
Sbjct: 104 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI-LQGH 162
Query: 101 RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLA 160
+ S +G L SGS D+++ D+R + G +G +A
Sbjct: 163 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI-EDGVTTVAVSPGDGKYIA 221
Query: 161 SGGDDNVVRIWERSKMSSSKSL----HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCI 216
+G D VR+W+ + L T H V ++ ++ + +G D +
Sbjct: 222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGS--LDRSV 278
Query: 217 KIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASG-------DGNKLCLWKYP 269
K+WN+Q HK+ + + + + W
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338
Query: 270 NMTKVGELQSSNSRILDL------SQSPDGLTVATAGADETIRFWE 309
+ + LQ + ++ + S P+ AT D R W+
Sbjct: 339 SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.0 bits (185), Expect = 5e-16
Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 29/189 (15%)
Query: 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE-------GHHRRVATSSWNH 110
D T D K +A G +D +++WD+ET LV L+ GH V + +
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 264
Query: 111 WNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHS-----------GEVCGLKWSNEGNLL 159
+G + SGS D+S+ +++ +NN + +S V + + +
Sbjct: 265 -DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI 323
Query: 160 ASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQV-----NVLATGGGREDG 214
SG D V W+ S L H V ++A + NV ATG D
Sbjct: 324 LSGSKDRGVLFWD---KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS--GDC 378
Query: 215 CIKIWNVQK 223
+IW +K
Sbjct: 379 KARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.9 bits (164), Expect = 2e-13
Identities = 46/304 (15%), Positives = 95/304 (31%), Gaps = 41/304 (13%)
Query: 40 LWKWENGKV--KKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE 97
L+ + +L + V +S+D + LA G + Q++ LV L
Sbjct: 42 LYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLS 100
Query: 98 GHHRRVATSSWN-----------------HWNGHILTSGSKDKSIINHDVRVSNNVTSCI 140
+G L +G++D+ I D+ V
Sbjct: 101 DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ 160
Query: 141 KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH 200
+ + L++ GD V R+ GV +A SP
Sbjct: 161 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-----SLTLSIEDGVTTVAVSPG 215
Query: 201 QVNVLATGGGREDGCIKIWNVQKGTCIHGIDA--------KAQICGLEWNRHHKEILSG- 251
+A G D +++W+ + G + +D+ K + + + R + ++SG
Sbjct: 216 DGKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273
Query: 252 -----HGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIR 306
++ NK + T +L ++ + + + + D +
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333
Query: 307 FWEA 310
FW+
Sbjct: 334 FWDK 337
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.5 bits (163), Expect = 3e-13
Identities = 40/269 (14%), Positives = 92/269 (34%), Gaps = 20/269 (7%)
Query: 16 DYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAV 75
D Y + + + + + W+ K ++ + G + S+ + L
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180
Query: 76 GYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR---- 131
G D +++WD T V T + + +G + +GS D+++ D
Sbjct: 181 GSGDRTVRIWDLRT-GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 239
Query: 132 --VSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMS---------SSK 180
++ H V + ++ +G + SG D V++W + S
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299
Query: 181 SLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-KAQICGL 239
+ H V ++A + + + +G +D + W+ + G + + + + +
Sbjct: 300 CEVTYIGHKDFVLSVATTQND-EYILSGS--KDRGVLFWDKKSGNPLLMLQGHRNSVISV 356
Query: 240 EWNRHHKEILSGHGFSASGDGNKLCLWKY 268
+ F+ K +WKY
Sbjct: 357 AVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.4 bits (155), Expect = 4e-12
Identities = 37/182 (20%), Positives = 72/182 (39%), Gaps = 23/182 (12%)
Query: 17 YYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVP-----GEDDYPTSVSWSHDAK 71
V + A +L + +W E G + + L G D SV ++ D +
Sbjct: 208 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ 267
Query: 72 TLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW-----------NGHILTSGS 120
++ G +D ++LW+ + + + + + ++ N + SGS
Sbjct: 268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 327
Query: 121 KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN------EGNLLASGGDDNVVRIWERS 174
KD+ ++ D + S N ++ H V + +N E N+ A+G D RIW+
Sbjct: 328 KDRGVLFWDKK-SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
Query: 175 KM 176
K+
Sbjct: 387 KI 388
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.1 bits (162), Expect = 4e-13
Identities = 53/286 (18%), Positives = 93/286 (32%), Gaps = 17/286 (5%)
Query: 27 NNVLAVALGPVLFLWKWENGKVKK---LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQ 83
+ + +W + K L D+Y S D TL VG S L
Sbjct: 63 TRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS 122
Query: 84 LWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH 143
+WD E A + + I + + + H
Sbjct: 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 182
Query: 144 SGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVN 203
+ + SN+G L +GG DN VR W+ + + D + +L + P
Sbjct: 183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR----QLQQHDFTSQIFSLGYCPTGEW 238
Query: 204 VLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKL 263
G E +++ +V K ++ + L++ K +S G N L
Sbjct: 239 ---LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVST------GKDNLL 289
Query: 264 CLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309
W+ P + + + S+S +L S D + T D+ +E
Sbjct: 290 NAWRTPYGASIFQSKESSS-VLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (131), Expect = 3e-09
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 139 CIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWS 198
+ H V LK++ G S G DN++ W + + + V + S
Sbjct: 260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR----TPYGASIFQSKESSSVLSCDIS 315
Query: 199 PHQVNVLATGGGREDGCIKIWNV 221
+ TG G D ++ V
Sbjct: 316 VDD-KYIVTGSG--DKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (115), Expect = 3e-07
Identities = 28/266 (10%), Positives = 73/266 (27%), Gaps = 19/266 (7%)
Query: 50 KLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK-----LVRNLEGHHRRVA 104
+ + + +V+ S+ + + G +++WD + +
Sbjct: 43 RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIR 101
Query: 105 TSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD 164
+ +G L G + ++ D+ S C + + +
Sbjct: 102 SCKL-LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC 160
Query: 165 DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224
+ + + ++ ++ D ++ W++++G
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-----LDNTVRSWDLREG 215
Query: 225 TCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRI 284
+ D +QI L + + + G S + KY + S
Sbjct: 216 RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS----- 270
Query: 285 LDLSQSPDGLTVATAGADETIRFWEA 310
L + G + G D + W
Sbjct: 271 --LKFAYCGKWFVSTGKDNLLNAWRT 294
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (109), Expect = 2e-06
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Query: 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILT 117
+ S+ +++ K D+ L W + V + + + +
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIV 322
Query: 118 SGSKDKSIINHDV 130
+GS DK ++V
Sbjct: 323 TGSGDKKATVYEV 335
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 66.0 bits (159), Expect = 7e-13
Identities = 36/303 (11%), Positives = 72/303 (23%), Gaps = 37/303 (12%)
Query: 38 LFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAV-GYMDSKLQLWDAETSKLVRNL 96
L + E V K++ + P + + L D T + + +
Sbjct: 13 LVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72
Query: 97 EGHHRRVATSSWN----HWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGE------ 146
+ S +G L + V + A +
Sbjct: 73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132
Query: 147 ----VCGLKWSNEGNLLASGGDDNVVRIWE--------------RSKMSSSKSLHRFTDH 188
+ L W+ +G+ L G D V E + L + H
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192
Query: 189 CGGVKALAWSPHQVNVLATGG-GREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKE 247
+ + +++ G + +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-- 250
Query: 248 ILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRF 307
A G N L + + + + ++ S DG TV GA +
Sbjct: 251 ----AKTRAFGAYNVLESFDLEKNASIKRVPLPH-SYYSVNVSTDGSTVWLGGALGDLAA 305
Query: 308 WEA 310
++A
Sbjct: 306 YDA 308
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.3 bits (100), Expect = 2e-05
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 22 IDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSK 81
A VL + E K + +P SV+ S D T+ +G
Sbjct: 246 TAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPH---SYYSVNVSTDGSTVWLGGALGD 302
Query: 82 LQLWDAETSKLVRNLE--GHHRRVATSS 107
L +DAET + ++ G+ S
Sbjct: 303 LAAYDAETLEKKGQVDLPGNASMSLASV 330
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.0 bits (89), Expect = 5e-04
Identities = 18/163 (11%), Positives = 41/163 (25%), Gaps = 14/163 (8%)
Query: 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCI 216
+ + + + + + + KM+ K + D +P AT +
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRIAYATVNK--SESL 58
Query: 217 KIWNVQKGTCIHGIDAKAQIC------GLEWNRHHKEILSGHGFSA-----SGDGNKLCL 265
++ G + ID G + K +
Sbjct: 59 VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118
Query: 266 WKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
+ + +I L+ + DG + G D +
Sbjct: 119 LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDP 161
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.6 bits (158), Expect = 1e-12
Identities = 29/281 (10%), Positives = 78/281 (27%), Gaps = 19/281 (6%)
Query: 47 KVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE---GHHRRV 103
++ ++ Q P DY + + L + D L ++ + +L + +
Sbjct: 2 QIVQIEQAP--KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59
Query: 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGG 163
++ + G+ I+ D+ S + + + + L +
Sbjct: 60 LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119
Query: 164 DDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQK 223
D ++ + + + + N G + ++ + +
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179
Query: 224 GTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDG--------------NKLCLWKYP 269
+G ++ + + +S DG N + +
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239
Query: 270 NMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ + + + SP + TAG+D I W
Sbjct: 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 4e-06
Identities = 14/107 (13%), Positives = 37/107 (34%), Gaps = 7/107 (6%)
Query: 41 WKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH 100
++ + L+ S+ +S K L D + W+ +T K ++N +
Sbjct: 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293
Query: 101 RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEV 147
+ +IL + D + + + + I+ ++ +
Sbjct: 294 EDSVVKI--ACSDNILCLATSDDTF-----KTNAAIDQTIELNASSI 333
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 3e-04
Identities = 29/199 (14%), Positives = 57/199 (28%), Gaps = 26/199 (13%)
Query: 108 WNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGE---VCGLKWSNEGNLLASGGD 164
N L G + + + + + I+ + E A
Sbjct: 155 TMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI 214
Query: 165 DNVVRIW------------ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRE 212
D V + +R + + T+ V ++ +SP + G
Sbjct: 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG---S 271
Query: 213 DGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT 272
DG I WN+Q I + ++ + A+ D + T
Sbjct: 272 DGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILC-----LATSDDT-FKTNAAIDQT 325
Query: 273 KVGELQSSNSRILDLSQSP 291
EL +S+ I+ ++P
Sbjct: 326 I--ELNASSIYIIFDYENP 342
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.3 bits (157), Expect = 1e-12
Identities = 43/291 (14%), Positives = 93/291 (31%), Gaps = 63/291 (21%)
Query: 65 SWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHW------------- 111
+D + + G D+ +++WD T + R L GH V ++
Sbjct: 20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRV 79
Query: 112 ------------------------NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEV 147
N ++ + SKD+SI D+ ++T
Sbjct: 80 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 139
Query: 148 CGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207
+ + S D +++W S+ + + H G+ L + V
Sbjct: 140 AVNVVDFDDKYIVSASGDRTIKVWN---TSTCEFVRTLNGHKRGIACLQYRDRLVVS--- 193
Query: 208 GGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK 267
G D I++W+++ G C+ ++ ++ + + + K+ +W
Sbjct: 194 --GSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR-------IVSGAYDGKIKVWD 244
Query: 268 YPNMTK---------VGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309
+ L + R+ L D + ++ D+TI W+
Sbjct: 245 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQ--FDEFQIVSSSHDDTILIWD 293
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.2 bits (157), Expect = 1e-12
Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 8/162 (4%)
Query: 66 WSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSI 125
D + G +D+ +++WD ET + L GH S +IL SG+ D ++
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT---SGMELKDNILVSGNADSTV 239
Query: 126 INHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL--H 183
D++ + + + + N + + DD V++W+ ++L
Sbjct: 240 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL 299
Query: 184 RFTDHCGGVKALAWSPHQVNVLATGG--GREDGCIKIWNVQK 223
G V + S + V A G G E+ + + +
Sbjct: 300 ESGGSGGVVWRIRASNTK-LVCAVGSRNGTEETKLLVLDFDV 340
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.9 bits (151), Expect = 1e-11
Identities = 45/266 (16%), Positives = 84/266 (31%), Gaps = 24/266 (9%)
Query: 43 WENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRR 102
W G++K + G DD+ + + G D+ L++W A T K +R L GH
Sbjct: 1 WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 103 VATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASG 162
V +S + V + + + SG
Sbjct: 60 VWSSQMRDNIIIS------GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSG 113
Query: 163 GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQ 222
D +R+W+ L + + +G D +K+W+ +
Sbjct: 114 SRDATLRVWDIETGQCLHVLMGHVAAV------RCVQYDGRRVVSGA--YDFMVKVWDPE 165
Query: 223 KGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNS 282
TC+H + G + + H S S D + + +W + L S
Sbjct: 166 TETCLH------TLQGHTNRVYSLQFDGIHVVSGSLDTS-IRVWDVETGNCIHTLTGHQS 218
Query: 283 RILDLSQSPDGLTVATAGADETIRFW 308
+ + + + AD T++ W
Sbjct: 219 LTSGMELKDN--ILVSGNADSTVKIW 242
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.5 bits (150), Expect = 1e-11
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 11/167 (6%)
Query: 64 VSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK 123
+D + + G D +++WD ET + L+GH RV ++G + SGS D
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV---YSLQFDGIHVVSGSLDT 197
Query: 124 SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLH 183
SI DV N + + S + N+L SG D+ V+IW+ ++L
Sbjct: 198 SIRVWDVETGNCIHTLTGHQSLTSG---MELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 254
Query: 184 RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI 230
H V L ++ + +DG +K+W+++ G I +
Sbjct: 255 GPNKHQSAVTCLQFNKNF-----VITSSDDGTVKLWDLKTGEFIRNL 296
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 3e-08
Identities = 24/140 (17%), Positives = 58/140 (41%), Gaps = 10/140 (7%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+ W+ + + G + + + L G DS +++WD +T + ++ L+G
Sbjct: 199 IRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGP 256
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVR----VSNNVTSCIKAHSGEVCGLKWSNE 155
++ + + +N + + + S D ++ D++ + N VT G V ++ SN
Sbjct: 257 NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 316
Query: 156 GNLLASGGDDN----VVRIW 171
+ A G + + +
Sbjct: 317 KLVCAVGSRNGTEETKLLVL 336
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.3 bits (157), Expect = 2e-12
Identities = 28/262 (10%), Positives = 71/262 (27%), Gaps = 17/262 (6%)
Query: 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETSK--LVRNLEGHHRRVATSSWNHWNGHILTSG 119
+ +W+ D +A+ + ++ +++ +K V L+ H+ +V W + + + +
Sbjct: 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTC 69
Query: 120 SKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSS 179
D++ ++ + + + G + I +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS-RVISICYFEQEN 128
Query: 180 KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGL 239
+ N + G D +I++ +
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188
Query: 240 EWNRHHKEILSGHGFSAS-------------GDGNKLCLWKYPNMTKVGELQSSNSRILD 286
+ E S G+ + +CL V L S +L
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248
Query: 287 LSQSPDGLTVATAGADETIRFW 308
++ + VA + F
Sbjct: 249 VTFITESSLVAAGHDCFPVLFT 270
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.0 bits (133), Expect = 2e-09
Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 5/171 (2%)
Query: 147 VCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLA 206
+ W+ + +A +++ V I+E+S + +H +H G V + W+P N +
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDS-NRIV 67
Query: 207 TGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLW 266
T G D +W ++ T + R S S +
Sbjct: 68 TCG--TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 267 KY-PNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGD 316
+ + S +L L P+ + +A D R + A+ +
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVE 176
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.5 bits (111), Expect = 1e-06
Identities = 37/300 (12%), Positives = 75/300 (25%), Gaps = 28/300 (9%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+++ K ++ ++ + T V W+ D+ + D +W + L
Sbjct: 33 IYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL 92
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIIN----HDVRVSNNVTSCIKAHSGEVCGLKWSNE 155
A + +I+ K V L W
Sbjct: 93 RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN 152
Query: 156 GNLLASGGDDNVVRIWERSKMSSSKSLHR---------------FTDHCGGVKALAWSPH 200
LLA+G D RI+ + + CG V + +S +
Sbjct: 153 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 212
Query: 201 QVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDG 260
V D + + + K + + ++ ++ A+G
Sbjct: 213 GSRVAWVS---HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLV------AAGHD 263
Query: 261 NKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSV 320
L+ Y + SQ D+ + DS+
Sbjct: 264 CFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL 323
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.4 bits (95), Expect = 9e-05
Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 8/144 (5%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
+ + K + + E +V++ ++ +A G+ D L+ +++ + G
Sbjct: 225 VCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGR 283
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN-- 157
SS K+ + S H V + + G
Sbjct: 284 LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS---LHKNSVSQISVLSGGKAK 340
Query: 158 --LLASGGDDNVVRIWERSKMSSS 179
+ G D + IW+ + S+
Sbjct: 341 CSQFCTTGMDGGMSIWDVRSLESA 364
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.0 bits (94), Expect = 1e-04
Identities = 21/170 (12%), Positives = 48/170 (28%), Gaps = 12/170 (7%)
Query: 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHI 115
+ V +S + +A DS + L DA+ V L + ++ +
Sbjct: 199 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF-ITESSL 257
Query: 116 LTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK 175
+ +G ++ + ++ D +
Sbjct: 258 VAAGHDCFPVLFTYDSAAGKLS--FGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA 315
Query: 176 MSSSKSLHRFTDHCGGVKALAWSP---HQVNVLATGGGREDGCIKIWNVQ 222
+ + H V ++ + + T G DG + IW+V+
Sbjct: 316 AGAG----LDSLHKNSVSQISVLSGGKAKCSQFCTTG--MDGGMSIWDVR 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 62.2 bits (149), Expect = 2e-11
Identities = 35/346 (10%), Positives = 65/346 (18%), Gaps = 64/346 (18%)
Query: 30 LAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSK--LQLWDA 87
+A F+ V K+ E V D K + L ++D
Sbjct: 18 IAFVSRGQAFIQDVSGTYVLKV----PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY 73
Query: 88 ETSKLVRNLEGHHRRVATSSWNHWNGH--------------------------------- 114
T K + E A +
Sbjct: 74 RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF 133
Query: 115 ---------------ILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
H + + + + L
Sbjct: 134 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNL 193
Query: 160 ASGGDDNVVRIWERSKMS----SSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215
++ +R ++ G P G +
Sbjct: 194 YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS-MTSEAGEYDLNDM 252
Query: 216 IKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVG 275
K + + + + + L + K
Sbjct: 253 YKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD----VKTR 308
Query: 276 ELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVS 321
++ + + DL S D TV D I + P DE +V
Sbjct: 309 KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP-EDERTVE 353
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.1 bits (89), Expect = 5e-04
Identities = 22/277 (7%), Positives = 62/277 (22%), Gaps = 10/277 (3%)
Query: 63 SVSWS-HDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSK 121
+ +S D +A + + D + +++ R+ G++
Sbjct: 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK--VPEPLRIRYVRRGGDTKVAFIHGTR 63
Query: 122 DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS 181
+ + + + G V + G D + + +
Sbjct: 64 EGDFL-GIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 122
Query: 182 LHRFTDHCGGVKALAWSPHQVNVLATGGGRE----DGCIKIWNVQKGTCIHGIDAKAQIC 237
S G I +++++ +
Sbjct: 123 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDY 182
Query: 238 GLEWNRHHKEILSGHGFSASGD-GNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTV 296
++ K + S + + + ++K + P +T
Sbjct: 183 APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTS 242
Query: 297 ATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTSV 333
D + + + D + L S
Sbjct: 243 EAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 38.3 bits (87), Expect = 0.001
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN 95
VL + + KV ++ + T + S D KT+ V D K+ + E + R
Sbjct: 298 GVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351
Query: 96 LEGHHRRV 103
+E R +
Sbjct: 352 VETDKRPL 359
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 61.3 bits (147), Expect = 4e-11
Identities = 29/308 (9%), Positives = 75/308 (24%), Gaps = 42/308 (13%)
Query: 38 LFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAV-GYMDSKLQLWDAETSKLVRNL 96
L + + V K +P P + + D +T V + D +T K +
Sbjct: 20 LHVVDVASDTVYKSCVMPD-KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 78
Query: 97 ------EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV------------TS 138
R + + + + + + + + + +H V +
Sbjct: 79 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV 138
Query: 139 CIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE----------------RSKMSSSKSL 182
+V ++ +++G+L +G D + + S
Sbjct: 139 RTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW 198
Query: 183 HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWN 242
+ + + + +++ G A
Sbjct: 199 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL 258
Query: 243 RHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGAD 302
R K G N+L + + + ++ G + G
Sbjct: 259 RSPK-----DPNQIYGVLNRLAKYDLKQRKLIKAANLDH-TYYCVAFDKKGDKLYLGGTF 312
Query: 303 ETIRFWEA 310
+ +
Sbjct: 313 NDLAVFNP 320
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 51.7 bits (122), Expect = 5e-08
Identities = 19/216 (8%), Positives = 52/216 (24%), Gaps = 35/216 (16%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
++ +G K ++ + + D + D +T K L
Sbjct: 126 VFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY---VAGPDIYKMDVKTGKYTVALPLR 182
Query: 100 HR------------------------RVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN 135
+ + T + + + ++ D++
Sbjct: 183 NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT 242
Query: 136 VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKAL 195
T + S + G + + + + L + + +
Sbjct: 243 HTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYD-----LKQRKLIKAANLDHTYYCV 297
Query: 196 AWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID 231
A+ + L GG + ++N + I
Sbjct: 298 AFDKKG-DKLYLGG--TFNDLAVFNPDTLEKVKNIK 330
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.7 bits (104), Expect = 7e-06
Identities = 13/94 (13%), Positives = 34/94 (36%), Gaps = 5/94 (5%)
Query: 15 EDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLA 74
+ Y + ++ + L + + K+ K + V++ L
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDH---TYYCVAFDKKGDKLY 307
Query: 75 VGYMDSKLQLWDAETSKLVRNLE--GHHRRVATS 106
+G + L +++ +T + V+N++ G T
Sbjct: 308 LGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTP 341
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 40.9 bits (94), Expect = 1e-04
Identities = 14/170 (8%), Positives = 37/170 (21%), Gaps = 13/170 (7%)
Query: 9 DAPYLMEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTS----V 64
D + +D + V +
Sbjct: 155 DGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 214
Query: 65 SWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKS 124
+ D + A + D +T K + ++ G
Sbjct: 215 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL------TELYFTGLRSPKDPNQIY 268
Query: 125 IINHDVRVSNNVTSCIKA---HSGEVCGLKWSNEGNLLASGGDDNVVRIW 171
+ + + + + + + +G+ L GG N + ++
Sbjct: 269 GVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVF 318
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 36.6 bits (83), Expect = 0.003
Identities = 13/167 (7%), Positives = 40/167 (23%), Gaps = 13/167 (7%)
Query: 149 GLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATG 208
G + N + + + + + KS G +P
Sbjct: 1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV--MPDKFGPGTAMMAPDNRTAYVLN 58
Query: 209 GGREDGCIKIWNVQKGTCIHGI-------DAKAQICGLEWNRHHKEILSGHGFSASGDGN 261
G I ++ + + + KE+ + + + +
Sbjct: 59 NH--YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116
Query: 262 KLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
+ + + ++ + P + + A D ++
Sbjct: 117 YVVKPPRLEVFSTADGLE--AKPVRTFPMPRQVYLMRAADDGSLYVA 161
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 56.7 bits (135), Expect = 1e-09
Identities = 30/309 (9%), Positives = 76/309 (24%), Gaps = 44/309 (14%)
Query: 38 LFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAV----------GYMDSKLQLWDA 87
F+ E G+V ++ + + + D +A G ++++D
Sbjct: 30 QFVIDGEAGRVIGMIDGG----FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 85
Query: 88 ETSKLVRNLEGHHRRVATS-------SWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI 140
T ++E S +L + +
Sbjct: 86 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML 145
Query: 141 KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH 200
+ + G V + + + + A+S
Sbjct: 146 DVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK 205
Query: 201 QVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICG---LEWNRHHKEILSGHG---- 253
++ G I ++ G +A W + ++ H
Sbjct: 206 AGRLVWPT---YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR 262
Query: 254 ----------FSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDG--LTVATAGA 301
+ + + ++ + + + I ++ S D L A +
Sbjct: 263 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLLYALSTG 321
Query: 302 DETIRFWEA 310
D+T+ +A
Sbjct: 322 DKTLYIHDA 330
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.3 bits (95), Expect = 1e-04
Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 21 VIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTL--AVGYM 78
++ R+ + + + G+ ++ S++ S D K L A+
Sbjct: 265 LLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH---EIDSINVSQDEKPLLYALSTG 321
Query: 79 DSKLQLWDAETSKLVRNLEGH 99
D L + DAE+ + +R++
Sbjct: 322 DKTLYIHDAESGEELRSVNQL 342
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.4 bits (134), Expect = 1e-09
Identities = 18/184 (9%), Positives = 48/184 (26%), Gaps = 4/184 (2%)
Query: 65 SWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKS 124
+ + G D ++++D+ K + L GH V + H G +++ +
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GGILVSGSTDRTV 76
Query: 125 IINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHR 184
+ + + + + +G DN + +W K+ S+
Sbjct: 77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW---KLPKESSVPD 133
Query: 185 FTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRH 244
+ + G + D + + +
Sbjct: 134 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC 193
Query: 245 HKEI 248
+
Sbjct: 194 LYIL 197
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.6 bits (98), Expect = 4e-05
Identities = 13/73 (17%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 99 HHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNL 158
HH ++ + + + +IL SGS + +++R V + I + ++ + + + L
Sbjct: 280 HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-L 337
Query: 159 LASGGDDNVVRIW 171
+A+ D +
Sbjct: 338 VAAVEKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.0 bits (86), Expect = 0.001
Identities = 20/277 (7%), Positives = 57/277 (20%), Gaps = 9/277 (3%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH 99
++ N K L G D ++ ++H ++ + + +
Sbjct: 37 VYDSINKKFLLQLS--GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHN 94
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159
+ N + +GS+D ++ + ++V + H + +
Sbjct: 95 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154
Query: 160 ASGGD------DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213
S +L + +
Sbjct: 155 GVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK 214
Query: 214 GCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273
CI + + + F S + N
Sbjct: 215 RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS 274
Query: 274 VGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310
+ + + +G++ +
Sbjct: 275 RKFSYHHTNLSAITTFYVSD-NILVSGSENQFNIYNL 310
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.4 bits (82), Expect = 0.004
Identities = 7/87 (8%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
Query: 41 WKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR-NLEGH 99
+ ++++ + + + V +++ +++ + KLV N+
Sbjct: 264 SIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKD 323
Query: 100 HRRVATSSWNHWNGHILTSGSKDKSII 126
++ + ++ ++ + KD
Sbjct: 324 ADQIWSVNFK--GKTLVAAVEKDGQSF 348
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.1 bits (133), Expect = 1e-09
Identities = 27/249 (10%), Positives = 65/249 (26%), Gaps = 2/249 (0%)
Query: 61 PTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS 120
+ + + + + + H + + +G+ SG
Sbjct: 20 AVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKT-SPSGYYCASGD 77
Query: 121 KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSK 180
++ D + ++ + + + + R +
Sbjct: 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 137
Query: 181 SLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLE 240
S T + ++ + P + + +G I K G K
Sbjct: 138 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 197
Query: 241 WNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAG 300
+G + + + + + L+ SPDG +A+A
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 257
Query: 301 ADETIRFWE 309
AD+TI+ W
Sbjct: 258 ADKTIKIWN 266
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.1 bits (120), Expect = 5e-08
Identities = 29/284 (10%), Positives = 67/284 (23%), Gaps = 4/284 (1%)
Query: 27 NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWD 86
+ + G ++ + ++ T S A G + +++WD
Sbjct: 29 GDKIQYCNGTSVYTVPVGSLTDTEIYT--EHSHQTTVAKTSPSGYYCASGDVHGNVRIWD 86
Query: 87 AETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGE 146
+ + + + + + V + + TS
Sbjct: 87 TTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA 146
Query: 147 VCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLA 206
+ + + + K F +H V ++ ++P +
Sbjct: 147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS 206
Query: 207 TGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLW 266
TGG + K K SAS D + +W
Sbjct: 207 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-TIKIW 265
Query: 267 KYPNMTKVGELQ-SSNSRILDLSQSPDGLTVATAGADETIRFWE 309
+ + + L + + A+ I F
Sbjct: 266 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 3e-09
Identities = 25/209 (11%), Positives = 60/209 (28%), Gaps = 42/209 (20%)
Query: 137 TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCG------ 190
+ KAH ++ + N + S D +++W+ + + + H
Sbjct: 7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64
Query: 191 ---GVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-----------KAQI 236
++A+ ++ ++AT G + + + + + K
Sbjct: 65 HVDVLQAIERDAFELCLVATTS--FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122
Query: 237 CGLEWNRHHKEILSGHGFSASGDGN-----------------KLCLWKYPNMTKVGELQS 279
L+W + +LS + G V +
Sbjct: 123 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182
Query: 280 SNSRILDLSQSPDGLTVATAGADETIRFW 308
+ + S GL +AT + T++
Sbjct: 183 PSQFATSVDISERGL-IATGFNNGTVQIS 210
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 2e-05
Identities = 37/195 (18%), Positives = 64/195 (32%), Gaps = 29/195 (14%)
Query: 39 FLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEG 98
W + + TSV S +A G+ + +Q+ + T + + N E
Sbjct: 165 LNWSPTLELQGTVESPMTPSQFATSVDISER-GLIATGFNNGTVQISELSTLRPLYNFES 223
Query: 99 HHRRVA-----TSSWNHWNGHILTSGSKDKSIINHDV---------------RVSNNVTS 138
H + S G +L S + S+ +
Sbjct: 224 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL 283
Query: 139 CIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVK----A 194
AHS V L +++ G L S G D +R W+ + + + + HC ++
Sbjct: 284 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD---VKTKERITTLNMHCDDIEIEEDI 340
Query: 195 LAWSPHQVNVLATGG 209
LA H + LA G
Sbjct: 341 LAVDEHG-DSLAEPG 354
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.5 bits (98), Expect = 4e-05
Identities = 19/134 (14%), Positives = 36/134 (26%), Gaps = 19/134 (14%)
Query: 41 WKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH 100
+ L + S+S++ +TL D KL+ WD +T + + L H
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 331
Query: 101 RRVATSSWN---HWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157
+ +G L +K ++
Sbjct: 332 DDIEIEEDILAVDEHGDSLAEPG----------------VFDVKFLKKGWRSGMGADLNE 375
Query: 158 LLASGGDDNVVRIW 171
L D +R +
Sbjct: 376 SLCCVCLDRSIRWF 389
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 5e-05
Identities = 33/247 (13%), Positives = 79/247 (31%), Gaps = 41/247 (16%)
Query: 85 WDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHS 144
E V + + + + ++ +G + ++ ++ + + HS
Sbjct: 169 PTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHS 226
Query: 145 -----GEVCGLKWSNEGNLLASGGDDNVVRIW-------------ERSKMSSSKSLHRFT 186
+ +K+S +G+LLA D N SS++
Sbjct: 227 MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF 286
Query: 187 DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHK 246
H V +L+++ + + G DG ++ W+V+ I ++ H
Sbjct: 287 AHSSWVMSLSFNDSGETLCSAG---WDGKLRFWDVKTKERITTLNM-----------HCD 332
Query: 247 EI-LSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETI 305
+I + + G+ L V +++ + ++ D +I
Sbjct: 333 DIEIEEDILAVDEHGDSLA------EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI 386
Query: 306 RFWEAFG 312
R++ G
Sbjct: 387 RWFREAG 393
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.8 bits (127), Expect = 7e-09
Identities = 31/296 (10%), Positives = 70/296 (23%), Gaps = 35/296 (11%)
Query: 46 GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVAT 105
G + ++ G + T++S S D KTL + + WD T R H + T
Sbjct: 2 GSIDQVRY--GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT 59
Query: 106 SSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD 165
G + T D + + + + + +A
Sbjct: 60 GIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY 119
Query: 166 NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT 225
+ I+ K++ + + + + +
Sbjct: 120 KHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP 179
Query: 226 --------------------------------CIHGIDAKAQICGLEWNRHHKEILSGHG 253
+ +
Sbjct: 180 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 239
Query: 254 FSASGDGN-KLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
+ S D + + P+ + + ++ + T+ +AG D I+FW
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.0 bits (104), Expect = 6e-06
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 4/114 (3%)
Query: 108 WNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNV 167
N+ + T S+ + T+ H+ +V + WS + LA+G DN
Sbjct: 188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 247
Query: 168 VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV 221
V +W +K S + + V ++ W + + G +D IK WNV
Sbjct: 248 VIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE--TTIVSAG--QDSNIKFWNV 297
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (125), Expect = 2e-08
Identities = 42/261 (16%), Positives = 71/261 (27%), Gaps = 13/261 (4%)
Query: 61 PTSVSWSHDAKTLAVGYMDSK-LQLWDAETSKL--VRNLEGHHRRVATS-SWN-HWNGHI 115
T +S+ +A S ++ D SK+ V GH V T+ ++
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 116 LTSGSKDKSIINHDVRVSNNVT-------SCIKAHSGEVCGLKWSNEGNLLASGGDDNVV 168
L SG + +I S + +G + + W EG L G+
Sbjct: 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139
Query: 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIH 228
S S + + H + A + T G K +
Sbjct: 140 FGVFISWDSGNSL-GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 198
Query: 229 GIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLS 288
K + + + + + + Q +
Sbjct: 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 258
Query: 289 QSPDGLTVATAGADETIRFWE 309
D AT GAD TIR W+
Sbjct: 259 SWLDSQKFATVGADATIRVWD 279
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 1e-06
Identities = 39/300 (13%), Positives = 83/300 (27%), Gaps = 21/300 (7%)
Query: 27 NNVLAVALG--PVLFLWKWENGKVKKLLQVPGEDDYP-TSVSWS--HDAKTLAVGYMDSK 81
N +A G + + KV ++Q G T+V +S ++ L G K
Sbjct: 29 TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGK 88
Query: 82 LQLWDAETSKLVRNL--------EGHHRRVATSSWNHWNG-HILTSGSKDKSIINHDVRV 132
+ +W K ++ + ++ SW+ + +D +
Sbjct: 89 VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS 148
Query: 133 SNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGV 192
N++ + + GDD V ++ S S V
Sbjct: 149 GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFV 208
Query: 193 KALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGH 252
+ + +SP KI + + ++ L
Sbjct: 209 RDVEFSPDSGEF----VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ 264
Query: 253 GFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQS---PDGLTVATAGADETIRFWE 309
F+ G + +W V + ++ + + + D T+ F+E
Sbjct: 265 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.9 bits (104), Expect = 7e-06
Identities = 16/126 (12%), Positives = 38/126 (30%), Gaps = 7/126 (5%)
Query: 98 GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157
G R S + I + S + + +
Sbjct: 205 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ 264
Query: 158 LLASGGDDNVVRIWERSKMSSSKSLHRFTDHCG--GVKALAWSPHQVNVLATGGGREDGC 215
A+ G D +R+W+ +++SK + ++T G + + + + DG
Sbjct: 265 KFATVGADATIRVWD---VTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS--LDGT 319
Query: 216 IKIWNV 221
+ + +
Sbjct: 320 LNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.5 bits (90), Expect = 3e-04
Identities = 17/133 (12%), Positives = 35/133 (26%), Gaps = 8/133 (6%)
Query: 143 HSGEVCGLKWSNEGNLLASG-GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQ 201
L + N +A G VR + + V + +SP +
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 202 -VNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDG 260
L +G E G + +W + + ++ + +S + G
Sbjct: 76 GSQYLCSGD--ESGKVIVWGWTFDKESNSV----EVNVKSEFQVLAGPISDISWDFEGRR 129
Query: 261 NKLCLWKYPNMTK 273
+ N
Sbjct: 130 LCVVGEGRDNFGV 142
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.2 bits (115), Expect = 2e-07
Identities = 23/141 (16%), Positives = 44/141 (31%), Gaps = 11/141 (7%)
Query: 41 WKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHH 100
+ P+ +S S +A G + K+ L+D ++ ++ +
Sbjct: 145 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR 204
Query: 101 RRVATSSWNHWNGHILT----------SGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGL 150
+ +GS D +I + V+ + + AH V L
Sbjct: 205 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNL 264
Query: 151 KWSNEGNLLASGGDDNVVRIW 171
W L S G D ++ W
Sbjct: 265 LWETPS-TLVSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.9 bits (109), Expect = 1e-06
Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 6/114 (5%)
Query: 108 WNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNV 167
G IL + + + + + I E + E +L+A+G D
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238
Query: 168 VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNV 221
+ I+ + K + H GV L W + L + G D CIK WNV
Sbjct: 239 IFIYSVKR--PMKIIKALNAHKDGVNNLLWETP--STLVSSG--ADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.4 bits (87), Expect = 7e-04
Identities = 29/289 (10%), Positives = 79/289 (27%), Gaps = 31/289 (10%)
Query: 46 GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET-----SKLVRNLEGHH 100
G + L + G + T+++ + L G D ++ W + + S L+ +L+
Sbjct: 1 GHDEVLKTISGHNKGITALTVN----PLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSK 56
Query: 101 RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLA 160
+ +S + + +N+ + + + ++ L+ + +
Sbjct: 57 AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKS 116
Query: 161 SGGDDNVVRIWERS-----------------KMSSSKSLHRFTDHCGGVKALAWSPHQVN 203
+ + S T ++ SP +
Sbjct: 117 VRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY 176
Query: 204 VLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEIL---SGHGFSASGDG 260
+ A + + + + T +
Sbjct: 177 IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD 236
Query: 261 NKLCLWKYPNMTK-VGELQSSNSRILDLSQSPDGLTVATAGADETIRFW 308
+ ++ K + L + + +L T+ ++GAD I+ W
Sbjct: 237 TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRW 284
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 45.7 bits (107), Expect = 5e-06
Identities = 32/269 (11%), Positives = 67/269 (24%), Gaps = 18/269 (6%)
Query: 20 KVIDWGRNNVLAVALGP--VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY 77
++ D N+ +V L + L ++ K+ K++ S + L V
Sbjct: 24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG---YAVHISRMSASGRYLLVIG 80
Query: 78 MDSKLQLWDAETSKLVRNLE----GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVS 133
D+++ + D + + E R V +S + + +G+ +
Sbjct: 81 RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 140
Query: 134 NNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVK 193
+ V + E + A K + L + D
Sbjct: 141 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV 200
Query: 194 AL---AWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNR------H 244
A ++ V + G +
Sbjct: 201 TSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFV 260
Query: 245 HKEILSGHGFSASGDGNKLCLWKYPNMTK 273
H + S GDG+ + P
Sbjct: 261 HPKYGPVWSTSHLGDGSISLIGTDPKNHP 289
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 36.7 bits (83), Expect = 0.003
Identities = 24/287 (8%), Positives = 63/287 (21%), Gaps = 17/287 (5%)
Query: 40 LWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSK-LQLWDAETSKLVRNLEG 98
+W + L QV + S D + L VG + +
Sbjct: 18 VWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA 77
Query: 99 HHRRVATS-----SWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAH---SGEVCGL 150
+ + + + + S+ + + V ++
Sbjct: 78 ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP 137
Query: 151 KWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210
+ + + + + T G + + + P++
Sbjct: 138 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL 197
Query: 211 REDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEIL----SGHGFSASGDGNKLCLW 266
+ G R +I H ++ + + ++
Sbjct: 198 NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVF 257
Query: 267 KYPNMTKVGELQSSNS---RILDLSQSPDGLTVATAGADE-TIRFWE 309
V + + + G + AG I +E
Sbjct: 258 SVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 304
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 335 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.97 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.96 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.94 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.92 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.9 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.87 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.86 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.86 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.81 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.81 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.79 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.78 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.76 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.7 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.69 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.63 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.55 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.53 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.52 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.48 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.47 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.46 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.46 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.4 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.37 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.36 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.31 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.3 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.27 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.23 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.22 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.13 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.12 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.93 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.86 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.83 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 98.81 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.79 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.73 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.46 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.45 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.28 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.26 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.12 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.1 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.09 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.05 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.95 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.86 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.85 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.7 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.58 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.56 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.52 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.44 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 97.23 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.18 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 97.1 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.98 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.89 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.54 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.3 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.27 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 96.18 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 96.05 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 95.65 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 93.7 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 92.27 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 92.11 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 88.07 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 87.2 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 83.12 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 80.25 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.7e-46 Score=305.44 Aligned_cols=281 Identities=19% Similarity=0.251 Sum_probs=242.7
Q ss_pred cccccceeeeecCC-ceEEEecCCeEEEEEecCCce---eeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 019847 14 MEDYYSKVIDWGRN-NVLAVALGPVLFLWKWENGKV---KKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET 89 (335)
Q Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 89 (335)
.+...+.+++|+++ .+++++.||.|+|||++++.. .......+|...|.+++|+|++++|++|+.||.|++||+..
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~ 128 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred CCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccc
Confidence 34577899999984 566667799999999976543 23444568999999999999999999999999999999874
Q ss_pred --ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCe
Q 019847 90 --SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNV 167 (335)
Q Consensus 90 --~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 167 (335)
.+....+..|...+..+.|+| ++.++++++.|+.+++|++++.. .......|...+.+++|+++++.+++++.|+.
T Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~-~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~ 206 (337)
T d1gxra_ 129 PTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206 (337)
T ss_dssp C--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ccccccccccccccccccccccc-ccccccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 456677788999999999999 99999999999999999998655 45667789999999999999999999999999
Q ss_pred EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCce
Q 019847 168 VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKE 247 (335)
Q Consensus 168 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (335)
+++||+++.. .+..+ .+..+|.+++|+|++..++ +++ .|+.+++||+++++......+...+.+++|+|++++
T Consensus 207 v~i~d~~~~~---~~~~~-~~~~~i~~l~~~~~~~~l~-~~~--~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~ 279 (337)
T d1gxra_ 207 VRSWDLREGR---QLQQH-DFTSQIFSLGYCPTGEWLA-VGM--ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp EEEEETTTTE---EEEEE-ECSSCEEEEEECTTSSEEE-EEE--TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSE
T ss_pred ccccccccce---eeccc-ccccceEEEEEcccccccc-eec--cccccccccccccccccccccccccceEEECCCCCE
Confidence 9999988643 34443 4788999999999996555 444 799999999999998877778889999999999999
Q ss_pred eeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 248 ILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 248 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
++++ +.|+.|++||+.+++.+..+. |...|++++|+|++++|++|+.||.|+|||+
T Consensus 280 l~s~------s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 280 FVST------GKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEE------ETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEE------eCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 9887 679999999999999987764 6788999999999999999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.9e-44 Score=293.30 Aligned_cols=278 Identities=15% Similarity=0.225 Sum_probs=231.5
Q ss_pred cceeeeecC-CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeE--e
Q 019847 18 YSKVIDWGR-NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV--R 94 (335)
Q Consensus 18 ~~~~~~~~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~ 94 (335)
...++++++ +..++.+.++.|.+|++++.+.... +.+|...|++++|+|+|++||+|+.||.|++||+.+++.. .
T Consensus 19 ~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~--~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~ 96 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEI--YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT 96 (311)
T ss_dssp CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEE--ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred CeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEE--EcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccc
Confidence 445677776 4566667788999999998876554 4689999999999999999999999999999999887643 5
Q ss_pred eecccccceeEeeecCCCCCEEEEeeC--CCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCE-EEEEeCCCeEEEE
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSK--DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNL-LASGGDDNVVRIW 171 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~iw 171 (335)
.+..|..+|.+++|+| ++++|++++. +..+++|++++.+. ...+.+|...|++++|+|++++ |++|+.||.|++|
T Consensus 97 ~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~-~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~ 174 (311)
T d1nr0a1 97 TIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTS-NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF 174 (311)
T ss_dssp EEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCB-CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEE
T ss_pred ccccccCccccccccc-cccccccccccccccccccccccccc-cccccccccccccccccccceeeecccccccccccc
Confidence 5778999999999999 8999988875 45699999986654 5567889999999999998875 8889999999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec--------CCcEeEEEeCC
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA--------KAQICGLEWNR 243 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~~ 243 (335)
|+++ .+.......|..+|.++.|+|++..++ +++ .|+.|++||+++++.+..++. ...|.+++|+|
T Consensus 175 d~~~---~~~~~~~~~~~~~i~~v~~~p~~~~l~-~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~ 248 (311)
T d1nr0a1 175 EGPP---FKFKSTFGEHTKFVHSVRYNPDGSLFA-STG--GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 248 (311)
T ss_dssp ETTT---BEEEEEECCCSSCEEEEEECTTSSEEE-EEE--TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred cccc---cccccccccccccccccccCccccccc-ccc--ccccccccccccccccccccccccccccccccccccccCC
Confidence 9876 455777788999999999999987544 444 799999999999988877653 35799999999
Q ss_pred CCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCC-ceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 244 HHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNS-RILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
+++++++| +.|+.|++||+++++++.++..|.. ....+.+.+++.+|++++.||.|++||++
T Consensus 249 ~~~~l~tg------s~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 249 DGTKIASA------SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp TSSEEEEE------ETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred CCCEEEEE------eCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 99999987 6799999999999999998876654 22333444556689999999999999974
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.2e-43 Score=287.00 Aligned_cols=280 Identities=24% Similarity=0.446 Sum_probs=252.0
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
+...+++++|+++ .+++++.|+.|+|||+++++... .+.+|...|.+++|+|++.+++++..++.+.+|+....+.
T Consensus 16 H~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~--~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (317)
T d1vyhc1 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER--TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC 93 (317)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE--EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE
T ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEE--EEeCCCCcEEEEeeeccccccccccccccccccccccccc
Confidence 5678999999974 56777899999999999988754 5568999999999999999999999999999999999999
Q ss_pred EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEE
Q 019847 93 VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWE 172 (335)
Q Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 172 (335)
...+..|...+.++.|++ +++.+++++.|+.+++||++++.. ...+..|...+.+++|+|++++|++++.|+.|++|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~ 171 (317)
T d1vyhc1 94 IRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 171 (317)
T ss_dssp EECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccccccccccceeeeccC-CCceEEeeccCcceeEeeccccee-eeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEe
Confidence 999999999999999999 999999999999999999987664 666788999999999999999999999999999999
Q ss_pred ccCCCcccceeeccCCCCCeeEEEecCCCC-------------------cEEEEecCCCCCeEEEEECCCCceEEEeec-
Q 019847 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQV-------------------NVLATGGGREDGCIKIWNVQKGTCIHGIDA- 232 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------------~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~- 232 (335)
++.. .....+..|...+.++.|+|++. .++.+++ .|+.|++||+++++++..+..
T Consensus 172 ~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~~~~~~~~~~~~~~~~~ 246 (317)
T d1vyhc1 172 VATK---ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--RDKTIKMWDVSTGMCLMTLVGH 246 (317)
T ss_dssp TTTC---CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE--TTSEEEEEETTTTEEEEEEECC
T ss_pred eccc---eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc--CCCEEEEEECCCCcEEEEEeCC
Confidence 8764 45667778899999999988653 2456665 899999999999999988875
Q ss_pred CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 233 KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
...+.+++++|++++++++ +.||.|++||+.+++++..+.+|.++|++++|+|++++|++|+.||.|++||
T Consensus 247 ~~~v~~~~~~~~~~~l~s~------~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 247 DNWVRGVLFHSGGKFILSC------ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSCEEEEEECSSSSCEEEE------ETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECCCCCEEEEE------ECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 5689999999999999887 6799999999999999999999999999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.8e-43 Score=293.50 Aligned_cols=285 Identities=24% Similarity=0.386 Sum_probs=230.5
Q ss_pred ccccceeeeecCC-ceEEEecCCeEEEEEecCCceeeEEe----------------ecCCCCCceEEEEcCCCCEEEEEE
Q 019847 15 EDYYSKVIDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQ----------------VPGEDDYPTSVSWSHDAKTLAVGY 77 (335)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~----------------~~~~~~~v~~~~~~~~~~~l~~~~ 77 (335)
+...++|++|+++ .+++++.|+.|+|||+.+++....+. ...|...|++++|+|++++|++|+
T Consensus 61 H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~ 140 (388)
T d1erja_ 61 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 140 (388)
T ss_dssp CSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc
Confidence 4567899999985 67777789999999999887654332 235777899999999999999999
Q ss_pred CCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-CC
Q 019847 78 MDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN-EG 156 (335)
Q Consensus 78 ~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 156 (335)
.||.|++||..+++.+..+.+|...|.++.+++ ++..+++++.++.+++||.++... ......+ ....++.+.+ ++
T Consensus 141 ~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~-~~~~~~~~~~~~~ 217 (388)
T d1erja_ 141 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQC-SLTLSIE-DGVTTVAVSPGDG 217 (388)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEE-EEEEECS-SCEEEEEECSTTC
T ss_pred ccccccccccccccccccccccccccccccccc-ccccccccccceeeeeeecccccc-ccccccc-cccccccccCCCC
Confidence 999999999999999999999999999999999 899999999999999999986554 3334444 4455555555 88
Q ss_pred CEEEEEeCCCeEEEEEccCCCcccce----eeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEE---
Q 019847 157 NLLASGGDDNVVRIWERSKMSSSKSL----HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHG--- 229 (335)
Q Consensus 157 ~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~--- 229 (335)
++|++++.||.|++||.+.......+ ....+|..+|.+++|+|++..++ +++ .|+.|++||+++++....
T Consensus 218 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~--~d~~i~iwd~~~~~~~~~~~~ 294 (388)
T d1erja_ 218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV-SGS--LDRSVKLWNLQNANNKSDSKT 294 (388)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE-EEE--TTSEEEEEEC-----------
T ss_pred CeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEE-EEE--CCCcEEEEeccCCcccccccc
Confidence 99999999999999998865432222 23346888999999999997554 544 799999999987643321
Q ss_pred ----------eecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeE------EcCCC
Q 019847 230 ----------IDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLS------QSPDG 293 (335)
Q Consensus 230 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~------~~~~~ 293 (335)
..+...+.+++|+|+++++++| +.||.|++||+++++++.++++|.+.|++++ |+|++
T Consensus 295 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg------~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~ 368 (388)
T d1erja_ 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSG------SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368 (388)
T ss_dssp ----CEEEEEECCSSCEEEEEECGGGCEEEEE------ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC
T ss_pred ccccceeeecccccceEEEEEECCCCCEEEEE------eCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCC
Confidence 2235679999999999999887 7799999999999999999999999999886 46789
Q ss_pred CEEEEEeCCCcEEEEecC
Q 019847 294 LTVATAGADETIRFWEAF 311 (335)
Q Consensus 294 ~~l~~~~~dg~v~iw~~~ 311 (335)
.+|++|+.||.|+||+++
T Consensus 369 ~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 369 NVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEEEEETTSEEEEEEEE
T ss_pred CEEEEEeCCCEEEEEeee
Confidence 999999999999999985
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.8e-43 Score=291.11 Aligned_cols=285 Identities=15% Similarity=0.228 Sum_probs=230.7
Q ss_pred cceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee--E
Q 019847 18 YSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL--V 93 (335)
Q Consensus 18 ~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~ 93 (335)
+++|++|+++ .+++++.|+.|+|||.++++......+.+|..+|++++|+|++++|++|+.|+.|++||+.+++. .
T Consensus 9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~ 88 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT 88 (371)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccc
Confidence 4889999985 45556688999999999998877888889999999999999999999999999999999987654 3
Q ss_pred eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee---eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 94 RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV---TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
..+..|...|.+++|+| +++.|++++.|+.+++|+++..... ......|...|.+++|+|++++|++|+.|+.|++
T Consensus 89 ~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v 167 (371)
T d1k8kc_ 89 LVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 167 (371)
T ss_dssp EECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ccccccccccccccccc-ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEE
Confidence 44567889999999999 9999999999999999998765532 3345578899999999999999999999999999
Q ss_pred EEccCCCc---------------ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-C
Q 019847 171 WERSKMSS---------------SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-A 234 (335)
Q Consensus 171 wd~~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~ 234 (335)
||+..... ...+.....|...|.+++|+|++..+ ++++ .|+.|++||+++++.+..+..+ .
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~s~~--~d~~i~iwd~~~~~~~~~~~~~~~ 244 (371)
T d1k8kc_ 168 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV-AWVS--HDSTVCLADADKKMAVATLASETL 244 (371)
T ss_dssp EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE-EEEE--TTTEEEEEEGGGTTEEEEEECSSC
T ss_pred EeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccc-cccc--cCCcceEEeeecccceeeeecccc
Confidence 99764321 12345556788999999999999755 5554 7999999999999999888764 5
Q ss_pred cEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC--Cceee-------------------------------------
Q 019847 235 QICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN--MTKVG------------------------------------- 275 (335)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~--~~~~~------------------------------------- 275 (335)
++.+++|+|+++++++| .|+.+++|.... .....
T Consensus 245 ~v~s~~fs~d~~~la~g-------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (371)
T d1k8kc_ 245 PLLAVTFITESSLVAAG-------HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 317 (371)
T ss_dssp CEEEEEEEETTEEEEEE-------TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred cceeeeecCCCCEEEEE-------cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEecccccc
Confidence 79999999999988765 366665554322 11100
Q ss_pred --cccCCCCceeEeEEcCCC----CEEEEEeCCCcEEEEecCCC
Q 019847 276 --ELQSSNSRILDLSQSPDG----LTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 276 --~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~v~iw~~~~~ 313 (335)
....|.+.|+++++.+.+ ..++|++.||.|++||++..
T Consensus 318 ~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~ 361 (371)
T d1k8kc_ 318 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361 (371)
T ss_dssp CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred ceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence 001378889999998754 46899999999999999653
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.9e-42 Score=281.39 Aligned_cols=247 Identities=21% Similarity=0.404 Sum_probs=216.8
Q ss_pred eEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEe
Q 019847 50 KLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHD 129 (335)
Q Consensus 50 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 129 (335)
....+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+..|...|.+++|+| ++.++++|+.|+.+.+|+
T Consensus 47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYN 125 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECT-TSSEEEEEETTCCEEEEE
T ss_pred eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeec-cceeeeeecccceeeccc
Confidence 3456789999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cccCCe--------------------------------------------eeEEeecCCCCEEEEEeecCCCEEEEEeCC
Q 019847 130 VRVSNN--------------------------------------------VTSCIKAHSGEVCGLKWSNEGNLLASGGDD 165 (335)
Q Consensus 130 ~~~~~~--------------------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 165 (335)
...... .......+...+....+.+.+.++++++.|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 205 (340)
T d1tbga_ 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205 (340)
T ss_dssp SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred ccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecC
Confidence 753221 011122345567778888889999999999
Q ss_pred CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec---CCcEeEEEeC
Q 019847 166 NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA---KAQICGLEWN 242 (335)
Q Consensus 166 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~ 242 (335)
+.|++||+++ .+.+..+.+|..+|++++|+|++.. +++++ .|+.|++||++..+.+..+.. ...+.+++|+
T Consensus 206 ~~v~i~d~~~---~~~~~~~~~h~~~i~~v~~~p~~~~-l~s~s--~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 279 (340)
T d1tbga_ 206 ASAKLWDVRE---GMCRQTFTGHESDINAICFFPNGNA-FATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279 (340)
T ss_dssp TEEEEEETTT---TEEEEEECCCSSCEEEEEECTTSSE-EEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred ceEEEEECCC---CcEEEEEeCCCCCeEEEEECCCCCE-EEEEe--CCCeEEEEeecccccccccccccccCceEEEEEC
Confidence 9999999876 4567778889999999999999965 45554 799999999999988877643 4569999999
Q ss_pred CCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 243 RHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
|+++++++| +.||.|++||+.+++++..+.+|.++|++++|+|++++|++|+.||.|++||
T Consensus 280 ~~~~~l~~g------~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 280 KSGRLLLAG------YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSSCEEEEE------ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEE------ECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 999999887 7799999999999999999999999999999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.2e-41 Score=274.93 Aligned_cols=261 Identities=15% Similarity=0.250 Sum_probs=225.9
Q ss_pred CCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeE-----eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEec
Q 019847 56 GEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV-----RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 130 (335)
.|...|.+++|+|+|++|++|+ ||.|+|||+.+++.. .....|...|.+++|+| ++++|++|+.||.|++||+
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~-dg~~l~s~~~dg~i~iwd~ 126 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEEC
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcC-CCCEEEEeecccccccccc
Confidence 7999999999999999999987 899999999765332 23446889999999999 9999999999999999998
Q ss_pred ccCC-eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEec
Q 019847 131 RVSN-NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 131 ~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
.... .....+..|...+..++|+|++.++++++.|+.|++||+++. +.......|...+.+++|++++..+++ ++
T Consensus 127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~---~~~~~~~~~~~~v~~l~~s~~~~~~~~-~~ 202 (337)
T d1gxra_ 127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGHTDGASCIDISNDGTKLWT-GG 202 (337)
T ss_dssp CCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEE-EE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccc-cc
Confidence 7544 345567789999999999999999999999999999998764 456667789999999999999975555 44
Q ss_pred CCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEE
Q 019847 210 GREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQ 289 (335)
Q Consensus 210 g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 289 (335)
.|+.+++||+++++.+..+....++.+++|+|+++.++++ +.++.+++||+++++.. ....|...|++++|
T Consensus 203 --~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~------~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~ 273 (337)
T d1gxra_ 203 --LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVG------MESSNVEVLHVNKPDKY-QLHLHESCVLSLKF 273 (337)
T ss_dssp --TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEE------ETTSCEEEEETTSSCEE-EECCCSSCEEEEEE
T ss_pred --ccccccccccccceeecccccccceEEEEEccccccccee------ccccccccccccccccc-cccccccccceEEE
Confidence 7999999999999999999999999999999999999887 67999999999988775 45678899999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 290 SPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 290 ~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
+|++++|++++.||.|++||+..++... ...|...|.++.++
T Consensus 274 s~~g~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~s 315 (337)
T d1gxra_ 274 AYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCDIS 315 (337)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE-EEECSSCEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCEEE-EccCCCCEEEEEEe
Confidence 9999999999999999999999876654 34577778777764
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=8.4e-41 Score=271.65 Aligned_cols=250 Identities=15% Similarity=0.237 Sum_probs=218.5
Q ss_pred CCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCee
Q 019847 57 EDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNV 136 (335)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 136 (335)
+.+.+..++++|+|+.|+.+. ++.|.+||+++++....+.+|...|++++|+| ++++|++|+.||.|++||+......
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp-~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeC-CCCeEeccccCceEeeeeeeccccc
Confidence 345667899999999999986 56799999999999999999999999999999 9999999999999999999877653
Q ss_pred -eEEeecCCCCEEEEEeecCCCEEEEEeCC--CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC
Q 019847 137 -TSCIKAHSGEVCGLKWSNEGNLLASGGDD--NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213 (335)
Q Consensus 137 -~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 213 (335)
...+..|..+|.+++|+|++++|++++.+ ..+++|+++.. +....+.+|...|.+++|+|++++++++++ .|
T Consensus 94 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~---~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs--~d 168 (311)
T d1nr0a1 94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG---TSNGNLTGQARAMNSVDFKPSRPFRIISGS--DD 168 (311)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC---CBCBCCCCCSSCEEEEEECSSSSCEEEEEE--TT
T ss_pred cccccccccCccccccccccccccccccccccccccccccccc---cccccccccccccccccccccceeeecccc--cc
Confidence 34577899999999999999999999864 56999998764 446667889999999999999998888877 89
Q ss_pred CeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecc-------cCCCCcee
Q 019847 214 GCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL-------QSSNSRIL 285 (335)
Q Consensus 214 ~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-------~~~~~~i~ 285 (335)
+.|++||+++++....+.. ..++.++.|+|++++++++ +.|+.+++||..+++....+ .+|...|+
T Consensus 169 ~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~------~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~ 242 (311)
T d1nr0a1 169 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST------GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF 242 (311)
T ss_dssp SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE------ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred cccccccccccccccccccccccccccccCccccccccc------ccccccccccccccccccccccccccccccccccc
Confidence 9999999999998888865 5689999999999999887 67999999999988776654 35888999
Q ss_pred EeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc
Q 019847 286 DLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 286 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 319 (335)
+++|+|++++|++|+.||.|+|||+.+++.....
T Consensus 243 ~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l 276 (311)
T d1nr0a1 243 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 276 (311)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 9999999999999999999999999887654433
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1e-40 Score=271.19 Aligned_cols=274 Identities=18% Similarity=0.298 Sum_probs=243.0
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEec
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 130 (335)
...+.+|.++|++++|+|++++|++|+.||+|+|||+++++.+..+..|...|.+++|+| ++.+++++..++.+..|+.
T Consensus 10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~-~~~~~~~~~~~~~~~~~~~ 88 (317)
T d1vyhc1 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDF 88 (317)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEET
T ss_pred cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeec-ccccccccccccccccccc
Confidence 346779999999999999999999999999999999999999999999999999999999 9999999999999999998
Q ss_pred ccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC
Q 019847 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210 (335)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 210 (335)
..... ...+..|...+.++.++|+++.+++++.|+.+++||+++. ..+..+..|...+.+++|+|++. ++++++
T Consensus 89 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~- 162 (317)
T d1vyhc1 89 QGFEC-IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG---YCVKTFTGHREWVRMVRPNQDGT-LIASCS- 162 (317)
T ss_dssp TSSCE-EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSS-EEEEEE-
T ss_pred ccccc-ccccccccccceeeeccCCCceEEeeccCcceeEeecccc---eeeeEEccCCCcceeeecccCCC-EEEEEe-
Confidence 85554 5557789999999999999999999999999999998764 45677788999999999999986 455555
Q ss_pred CCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeee--------------eeeeeecCCCeEEEEECCCCceee
Q 019847 211 REDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSG--------------HGFSASGDGNKLCLWKYPNMTKVG 275 (335)
Q Consensus 211 ~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~i~i~d~~~~~~~~ 275 (335)
.|+.|++|++.+++....+.. ...+.++.++|++...... ..+.+++.|+.|++||+.+++++.
T Consensus 163 -~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 241 (317)
T d1vyhc1 163 -NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241 (317)
T ss_dssp -TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred -CCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEE
Confidence 899999999999999888865 4578899999887653321 224556889999999999999999
Q ss_pred cccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 276 ELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 276 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
++.+|...|++++|+|++++|++|+.||.|++||+.+++....+.+|...|.++.++
T Consensus 242 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s 298 (317)
T d1vyhc1 242 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 298 (317)
T ss_dssp EEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC
T ss_pred EEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 999999999999999999999999999999999999998888888899999988875
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.9e-39 Score=271.88 Aligned_cols=289 Identities=19% Similarity=0.338 Sum_probs=234.1
Q ss_pred ceEEEecCCeEEEEEecCCceee--EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec--------
Q 019847 28 NVLAVALGPVLFLWKWENGKVKK--LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE-------- 97 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------- 97 (335)
..+....++...+|+....+... .....+|.+.|+|++|+|+|++||+|+ |+.|+|||+.+++.+..+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~ 108 (388)
T d1erja_ 30 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD 108 (388)
T ss_dssp TTSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred cccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccc
Confidence 45677788899999976554322 233346999999999999999999986 8999999999988776654
Q ss_pred ----------ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCe
Q 019847 98 ----------GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNV 167 (335)
Q Consensus 98 ----------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 167 (335)
.|...|++++|+| ++++|++|+.||.|++||....+. .....+|...|.++++++++..+++++.++.
T Consensus 109 ~~~~~~~~~~~~~~~V~~l~~s~-~~~~l~s~~~dg~v~i~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 186 (388)
T d1erja_ 109 PENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 186 (388)
T ss_dssp ----------CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ccccccccccCCCCCEEEEEECC-CCCcceeccccccccccccccccc-cccccccccccccccccccccccccccccee
Confidence 3556799999999 999999999999999999986554 5667889999999999999999999999999
Q ss_pred EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec--------CCcEeEE
Q 019847 168 VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA--------KAQICGL 239 (335)
Q Consensus 168 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--------~~~~~~~ 239 (335)
+++||.+... ...... +.....++.+.+....++++++ .|+.|++||.+++.....+.. ...+.++
T Consensus 187 i~~~d~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 260 (388)
T d1erja_ 187 VRIWDLRTGQ---CSLTLS-IEDGVTTVAVSPGDGKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV 260 (388)
T ss_dssp EEEEETTTTE---EEEEEE-CSSCEEEEEECSTTCCEEEEEE--TTSCEEEEETTTCCEEEEEC------CCCSSCEEEE
T ss_pred eeeeeccccc---cccccc-cccccccccccCCCCCeEEEEc--CCCeEEEeecccCccceeeccccccccCCCCCEEEE
Confidence 9999987642 333333 3445566667665556777776 899999999999988776642 4579999
Q ss_pred EeCCCCceeeeeeeeeeecCCCeEEEEECCCCce------------eecccCCCCceeEeEEcCCCCEEEEEeCCCcEEE
Q 019847 240 EWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK------------VGELQSSNSRILDLSQSPDGLTVATAGADETIRF 307 (335)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i 307 (335)
+|+|++++++++ +.|+.|++||+.+++. ......|...|++++|+|++++|++|+.||.|++
T Consensus 261 ~~s~~~~~l~s~------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~v 334 (388)
T d1erja_ 261 VFTRDGQSVVSG------SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334 (388)
T ss_dssp EECTTSSEEEEE------ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred EECCCCCEEEEE------ECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEE
Confidence 999999999887 6799999999976543 3334568889999999999999999999999999
Q ss_pred EecCCCCCCCCcccccccccccee
Q 019847 308 WEAFGPSGDEDSVSHLAGLVSLKT 331 (335)
Q Consensus 308 w~~~~~~~~~~~~~~~~~i~~~~~ 331 (335)
||+.+++....+.+|...|.++.+
T Consensus 335 wd~~~~~~~~~l~~H~~~V~~~~~ 358 (388)
T d1erja_ 335 WDKKSGNPLLMLQGHRNSVISVAV 358 (388)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEE
T ss_pred EECCCCcEEEEEeCCCCCEEEEEE
Confidence 999998888888889888877654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.8e-39 Score=264.53 Aligned_cols=285 Identities=16% Similarity=0.227 Sum_probs=219.4
Q ss_pred cccceeeeecCC-ceEEEecCCeE--EEEEecCCceeeEEeecCC-CCCceEEEEcC--CCCEEEEEECCCcEEEEeCCC
Q 019847 16 DYYSKVIDWGRN-NVLAVALGPVL--FLWKWENGKVKKLLQVPGE-DDYPTSVSWSH--DAKTLAVGYMDSKLQLWDAET 89 (335)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~i--~vw~~~~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~ 89 (335)
...+.+++|+++ ..++.+.+..+ +.|+....+......+.+| ...|++++|+| ++++|++|+.||+|+|||+..
T Consensus 17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~ 96 (325)
T d1pgua1 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF 96 (325)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence 345678889873 45555555554 5565545544556667777 46799999998 678999999999999999875
Q ss_pred ceeE--------eeecccccceeEeeecCCCCCEEEEeeC--CCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCE-
Q 019847 90 SKLV--------RNLEGHHRRVATSSWNHWNGHILTSGSK--DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNL- 158 (335)
Q Consensus 90 ~~~~--------~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~- 158 (335)
++.. ..+..|..+|.+++|++ ++..+++++. ++.+.+|+.+++.. ...+.+|...|.+++|+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~ 174 (325)
T d1pgua1 97 DKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNS-LGEVSGHSQRINACHLKQSRPMR 174 (325)
T ss_dssp EGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCE-EEECCSCSSCEEEEEECSSSSCE
T ss_pred CcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeeccccc-ceeeeecccccccccccccccce
Confidence 4322 23456788999999999 8888877654 67899999986654 5667889999999999998765
Q ss_pred EEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC-cEe
Q 019847 159 LASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA-QIC 237 (335)
Q Consensus 159 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~-~~~ 237 (335)
+++++.|+.+++||++.............|...|.+++|+|++..++++++ .|+.|++||+++++.+..+..+. ++.
T Consensus 175 ~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~--~d~~i~iwd~~~~~~~~~l~~~~~~v~ 252 (325)
T d1pgua1 175 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG--SDRKISCFDGKSGEFLKYIEDDQEPVQ 252 (325)
T ss_dssp EEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE--TTCCEEEEETTTCCEEEECCBTTBCCC
T ss_pred EEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccc--cccceeeeeeccccccccccccccccc
Confidence 778999999999998765544555556678889999999998777788776 89999999999999999887543 444
Q ss_pred EEEeC---CCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCc--eeEeEEcCC-CCEEEEEeCCCcEEEEec
Q 019847 238 GLEWN---RHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSR--ILDLSQSPD-GLTVATAGADETIRFWEA 310 (335)
Q Consensus 238 ~~~~~---~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~--i~~~~~~~~-~~~l~~~~~dg~v~iw~~ 310 (335)
.+.|+ |++++++++ +.|+.|++||+++++++..+..|... +..+++.+. +.+|++++.||.|++||+
T Consensus 253 ~~~~s~~~~dg~~l~s~------s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 253 GGIFALSWLDSQKFATV------GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp SCEEEEEESSSSEEEEE------ETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred cceeeeeccCCCEEEEE------eCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 44444 678888877 78999999999999998887665543 334444432 347899999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.6e-39 Score=269.69 Aligned_cols=245 Identities=16% Similarity=0.208 Sum_probs=205.4
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce--eEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK--LVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN 135 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 135 (335)
.++|+|++|+|++++||+|+.||.|+|||+++++ .+..+++|.++|.+++|+| ++++|++|+.|+.|++||+.+...
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp-~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECC-CCCEEEEEECCCeEEEEeeccccc
Confidence 4789999999999999999999999999998775 5677889999999999999 999999999999999999986543
Q ss_pred e-eEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccc-eeeccCCCCCeeEEEecCCCCcEEEEecCCCC
Q 019847 136 V-TSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS-LHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213 (335)
Q Consensus 136 ~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 213 (335)
. ...+..|...|.+++|+|+++.|++++.|+.+++|++........ ......|...|.+++|+|++.. +++++ .|
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-l~s~s--~D 162 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL-LAAGS--CD 162 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE-EEEEE--TT
T ss_pred ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccc-eeccc--cC
Confidence 2 334567889999999999999999999999999999876543322 3445678899999999999965 55555 89
Q ss_pred CeEEEEECCCCc------------------eEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee
Q 019847 214 GCIKIWNVQKGT------------------CIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV 274 (335)
Q Consensus 214 ~~i~i~d~~~~~------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 274 (335)
+.+++||+.... .+.... +...+.+++|+|+++.++++ +.|+.|++||+.+++.+
T Consensus 163 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~------~~d~~i~iwd~~~~~~~ 236 (371)
T d1k8kc_ 163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV------SHDSTVCLADADKKMAV 236 (371)
T ss_dssp SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE------ETTTEEEEEEGGGTTEE
T ss_pred cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccc------ccCCcceEEeeecccce
Confidence 999999986532 222222 34568999999999999887 67999999999999999
Q ss_pred ecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 275 GELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 275 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
..+..|..+|.+++|+|++++|++| .|+.+++|.....
T Consensus 237 ~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~ 274 (371)
T d1k8kc_ 237 ATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSA 274 (371)
T ss_dssp EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETT
T ss_pred eeeecccccceeeeecCCCCEEEEE-cCCceEEEEeeCC
Confidence 9999999999999999999877765 5788888776654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.5e-37 Score=253.57 Aligned_cols=272 Identities=17% Similarity=0.249 Sum_probs=211.2
Q ss_pred ceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecc
Q 019847 19 SKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEG 98 (335)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 98 (335)
++|++++++.+++++.|+.|+|||+.+++.. ..+.+|...|++++|+|+ .+|++|+.||.|++|+....+.......
T Consensus 16 itc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~--~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~ 92 (355)
T d1nexb2 16 ITCLQFEDNYVITGADDKMIRVYDSINKKFL--LQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEG 92 (355)
T ss_dssp EEEEEEETTEEEEEETTTEEEEEETTTTEEE--EEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EEEEEECCCEEEEEeCCCeEEEEECCCCcEE--EEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccc
Confidence 5789999888999999999999999998764 456699999999999985 5899999999999999998876655443
Q ss_pred cc--cceeEeeecCCCCCEEEEeeCCCcEEEEecccCC------------------------------------------
Q 019847 99 HH--RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN------------------------------------------ 134 (335)
Q Consensus 99 ~~--~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------------------------------------------ 134 (335)
.. .......+.+ ++..+++++.|+.|++||++...
T Consensus 93 ~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (355)
T d1nexb2 93 HNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 171 (355)
T ss_dssp CSSCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEET
T ss_pred cccccccccccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccccccc
Confidence 32 2334444555 66677777777777777764321
Q ss_pred --------------------eeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeE
Q 019847 135 --------------------NVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKA 194 (335)
Q Consensus 135 --------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 194 (335)
........+...+.++.++|+++++++++.|+.|++||+++ ...+..+.+|...|.+
T Consensus 172 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---~~~~~~~~~h~~~v~~ 248 (355)
T d1nexb2 172 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN---GELMYTLQGHTALVGL 248 (355)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT---CCEEEEECCCSSCCCE
T ss_pred ceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccc---cccccccccccccccc
Confidence 11223345667788899999999999999999999999876 4557778899999999
Q ss_pred EEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee
Q 019847 195 LAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV 274 (335)
Q Consensus 195 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 274 (335)
+.++++ ++++++ .||.|++||++++................+++++.++++| .|+.|++||+++++++
T Consensus 249 ~~~~~~---~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-------~d~~i~vwd~~tg~~~ 316 (355)
T d1nexb2 249 LRLSDK---FLVSAA--ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-------SENQFNIYNLRSGKLV 316 (355)
T ss_dssp EEECSS---EEEEEC--TTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEE-------ETTEEEEEETTTCCBC
T ss_pred cccccc---eeeeee--cccccccccccccceecccccCCceEEEEEcCCCCEEEEE-------eCCEEEEEECCCCCEE
Confidence 999753 566665 8999999999988776555444433444566777766554 3899999999999988
Q ss_pred e-cccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 275 G-ELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 275 ~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
. .+.+|.++|++++|+|+ .++++++.||.++||.+
T Consensus 317 ~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 317 HANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp CSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred EEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 5 46789999999999987 47888899999777654
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.3e-37 Score=248.04 Aligned_cols=276 Identities=15% Similarity=0.189 Sum_probs=211.1
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL 92 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 92 (335)
+...+++++|+++ .+++++.|+.|++||+++++....+ ..+|...|++++|+|++++ ++++.|+.+++|+......
T Consensus 11 H~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~-~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~ 88 (299)
T d1nr0a2 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF-PDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGV 88 (299)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS-SCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSS
T ss_pred CCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-cCCCCCcEEEEEeecccee-ecccceeeEEEeccCCccc
Confidence 5667999999984 5777889999999999998865433 2478999999999999975 5566799999999865432
Q ss_pred ---EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEE
Q 019847 93 ---VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVR 169 (335)
Q Consensus 93 ---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 169 (335)
......+...+.+++|+| ++.++++++ ++.+.+|+... .... .....+.+++|+|++++|++++.||.|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~s~-~g~~~~~~~-~~~i~~~~~~~---~~~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 161 (299)
T d1nr0a2 89 DSSKAVANKLSSQPLGLAVSA-DGDIAVAAC-YKHIAIYSHGK---LTEV--PISYNSSCVALSNDKQFVAVGGQDSKVH 161 (299)
T ss_dssp CTTSCCEEECSSCEEEEEECT-TSSCEEEEE-SSEEEEEETTE---EEEE--ECSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred ccccccccccccccccccccc-ccccccccc-ccccccccccc---cccc--cccccccccccccccccccccccccccc
Confidence 122334667889999999 787776655 56899998542 2222 2445688999999999999999999999
Q ss_pred EEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEee----cCCcEeEEEeCCCC
Q 019847 170 IWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGID----AKAQICGLEWNRHH 245 (335)
Q Consensus 170 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~ 245 (335)
+||++..... . .....|..+|.+++|+|++..+++ ++ .|+.|++||+.++....... +..++.+++|+|++
T Consensus 162 ~~d~~~~~~~-~-~~~~~~~~~i~~~~~~~~~~~l~~-~~--~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 236 (299)
T d1nr0a2 162 VYKLSGASVS-E-VKTIVHPAEITSVAFSNNGAFLVA-TD--QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN 236 (299)
T ss_dssp EEEEETTEEE-E-EEEEECSSCEEEEEECTTSSEEEE-EE--TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS
T ss_pred cccccccccc-c-cccccccccccccccccccccccc-cc--cccccccccccccccccccccccccccccccccccccc
Confidence 9998864321 1 223458899999999999975554 44 79999999998877654432 34689999999999
Q ss_pred ceeeeeeeeeeecCCCeEEEEECCCCcee--ecccCC-CCceeEeEEcCCCCEEEEEeCCCcEEEEecC
Q 019847 246 KEILSGHGFSASGDGNKLCLWKYPNMTKV--GELQSS-NSRILDLSQSPDGLTVATAGADETIRFWEAF 311 (335)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~ 311 (335)
++++++ +.|+.|++||++++... .....| ...+.++.| +++++|++++.||.|++||+.
T Consensus 237 ~~l~sg------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 237 VRLATG------SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp SEEEEE------ETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred cceEEE------cCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 999987 77999999999876543 233333 445666655 567799999999999999984
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.5e-36 Score=245.42 Aligned_cols=246 Identities=19% Similarity=0.231 Sum_probs=201.2
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec-ccccceeEeeecCCCCCEEEEeeCCCcEEEEecc
Q 019847 53 QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE-GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVR 131 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 131 (335)
.+.||...|++++|+|++++|++|+.||.|++||+++++....+. .|...|++++|+| ++. +++++.|+.+++|+..
T Consensus 7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~-~g~-~~~~~~d~~v~~~~~~ 84 (299)
T d1nr0a2 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGD-LFTVSWDDHLKVVPAG 84 (299)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSC-EEEEETTTEEEEECSS
T ss_pred EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeec-cce-eecccceeeEEEeccC
Confidence 457999999999999999999999999999999999999888874 6889999999999 776 5566789999999986
Q ss_pred cCCe--eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEec
Q 019847 132 VSNN--VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG 209 (335)
Q Consensus 132 ~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 209 (335)
.... .......+...+.+++|+|+++++++++ ++.+++|+... ..... ....+.+++|+|++. ++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~-----~~~~~--~~~~~~~~~~s~~~~-~l~~g~ 155 (299)
T d1nr0a2 85 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK-----LTEVP--ISYNSSCVALSNDKQ-FVAVGG 155 (299)
T ss_dssp SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE-----EEEEE--CSSCEEEEEECTTSC-EEEEEE
T ss_pred Cccccccccccccccccccccccccccccccccc-ccccccccccc-----ccccc--ccccccccccccccc-cccccc
Confidence 5332 1223445778899999999999877766 67899999443 12221 345578999999986 555555
Q ss_pred CCCCCeEEEEECCCCceEE--EeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceee---cccCCCCce
Q 019847 210 GREDGCIKIWNVQKGTCIH--GIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVG---ELQSSNSRI 284 (335)
Q Consensus 210 g~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~---~~~~~~~~i 284 (335)
.|+.|++||+++++... ...+..++.+++|+|++++++++ +.++.|++||+.++.... .+..|..+|
T Consensus 156 --~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v 227 (299)
T d1nr0a2 156 --QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT------DQSRKVIPYSVANNFELAHTNSWTFHTAKV 227 (299)
T ss_dssp --TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEE------ETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred --cccccccccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccc
Confidence 89999999998876543 44567789999999999999887 679999999998876553 456788999
Q ss_pred eEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 285 LDLSQSPDGLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 285 ~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
++++|+|++++|++|+.||.|++||+..+....
T Consensus 228 ~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~ 260 (299)
T d1nr0a2 228 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP 260 (299)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTCTTSCC
T ss_pred ccccccccccceEEEcCCCEEEEEECCCCCcce
Confidence 999999999999999999999999998876544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.5e-35 Score=240.93 Aligned_cols=270 Identities=20% Similarity=0.375 Sum_probs=211.5
Q ss_pred ceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecc
Q 019847 19 SKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEG 98 (335)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 98 (335)
+.|++++++.+++++.|+.|+|||+++++.. ..+.+|...|.+++|+|+ +|++|+.|+.+++|+............
T Consensus 20 ~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~--~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~ 95 (342)
T d2ovrb2 20 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCL--RTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYG 95 (342)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEE--EECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEEECCCEEEEEeCCCeEEEEECCCCCEE--EEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccc
Confidence 4578999889999999999999999999864 456799999999999875 899999999999999876554333222
Q ss_pred cccceeE--------------------------------------eeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEe
Q 019847 99 HHRRVAT--------------------------------------SSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI 140 (335)
Q Consensus 99 ~~~~v~~--------------------------------------~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 140 (335)
+...+.. ....+ ....+++++.|+.+++||.+... ....+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~d~~~~~-~~~~~ 173 (342)
T d2ovrb2 96 HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETET-CLHTL 173 (342)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGTE-EEEEE
T ss_pred cceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecc-ccceeeeecCCCeEEEeecccce-eeEEE
Confidence 2111111 11122 45678888999999999998554 45567
Q ss_pred ecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEE
Q 019847 141 KAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWN 220 (335)
Q Consensus 141 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d 220 (335)
.+|...+..+. +++.++++++.||.|++||++. .+.+..+..|...+.++.++++ ++++++ .|+.|++||
T Consensus 174 ~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~---~~~~~~~~~~~~~v~~~~~~~~---~l~s~s--~d~~i~iwd 243 (342)
T d2ovrb2 174 QGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVET---GNCIHTLTGHQSLTSGMELKDN---ILVSGN--ADSTVKIWD 243 (342)
T ss_dssp CCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTT---CCEEEEECCCCSCEEEEEEETT---EEEEEE--TTSCEEEEE
T ss_pred cCccccccccc--CCCCEEEEEeCCCeEEEeeccc---ceeeeEecccccceeEEecCCC---EEEEEc--CCCEEEEEe
Confidence 77877766554 5678999999999999999876 4557778889999999888763 566665 899999999
Q ss_pred CCCCceEEEeecC----CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc-----CCCCceeEeEEcC
Q 019847 221 VQKGTCIHGIDAK----AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ-----SSNSRILDLSQSP 291 (335)
Q Consensus 221 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~ 291 (335)
+...+....+..+ ..+.++.++ +.+++++ +.||.|++||+++++.+..+. +|.+.|++++|+|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~------s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~ 315 (342)
T d2ovrb2 244 IKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITS------SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 315 (342)
T ss_dssp TTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEE------ETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred cccccccccccccceeeeceeecccC--CCeeEEE------cCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECC
Confidence 9999888777642 345556554 4566666 789999999999999887763 5777899999999
Q ss_pred CCCEEEEEeCCCc----EEEEecCC
Q 019847 292 DGLTVATAGADET----IRFWEAFG 312 (335)
Q Consensus 292 ~~~~l~~~~~dg~----v~iw~~~~ 312 (335)
++.+|++|+.||+ |++||++.
T Consensus 316 ~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 316 TKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 9999999999985 99999874
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.4e-34 Score=237.45 Aligned_cols=239 Identities=17% Similarity=0.296 Sum_probs=196.2
Q ss_pred ccccceeeeecCC--ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCce-
Q 019847 15 EDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSK- 91 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~- 91 (335)
+...|.+++|+++ .+++++.||.|++||+.+++... .+..|...|.+++|+|+++++++|+.|+.+++|+.....
T Consensus 54 H~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~ 131 (340)
T d1tbga_ 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH--AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG 131 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE--EEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCS
T ss_pred CCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE--EEecccccEEeeEeeccceeeeeecccceeeccccccccc
Confidence 5667999999984 57778899999999999988644 456899999999999999999999999999999965421
Q ss_pred ---eEeee-----------------------------------------cccccceeEeeecCCCCCEEEEeeCCCcEEE
Q 019847 92 ---LVRNL-----------------------------------------EGHHRRVATSSWNHWNGHILTSGSKDKSIIN 127 (335)
Q Consensus 92 ---~~~~~-----------------------------------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 127 (335)
....+ ..+...+....+.+ ...++++++.|+.|++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i 210 (340)
T d1tbga_ 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKL 210 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTTEEEE
T ss_pred ccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccc-ccceeEEeecCceEEE
Confidence 11111 12334566667777 8889999999999999
Q ss_pred EecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEE
Q 019847 128 HDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207 (335)
Q Consensus 128 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 207 (335)
||+++.. ....+.+|...|++++|+|++++|++|+.||.|++||++...... ......+...+.+++|+|++..+ ++
T Consensus 211 ~d~~~~~-~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l-~~ 287 (340)
T d1tbga_ 211 WDVREGM-CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM-TYSHDNIICGITSVSFSKSGRLL-LA 287 (340)
T ss_dssp EETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCTTCCSCEEEEEECSSSCEE-EE
T ss_pred EECCCCc-EEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccc-ccccccccCceEEEEECCCCCEE-EE
Confidence 9998655 466678899999999999999999999999999999988643322 22334567789999999999654 55
Q ss_pred ecCCCCCeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEE
Q 019847 208 GGGREDGCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK 267 (335)
Q Consensus 208 ~~g~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 267 (335)
++ .||.|++||+.+++++..+.. ..+|.+++|+|++++++++ +.||.|++||
T Consensus 288 g~--~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~------s~Dg~v~iWd 340 (340)
T d1tbga_ 288 GY--DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG------SWDSFLKIWN 340 (340)
T ss_dssp EE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE------ETTSCEEEEC
T ss_pred EE--CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE------ccCCEEEEeC
Confidence 54 799999999999999999985 5689999999999999987 7799999997
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.3e-34 Score=228.73 Aligned_cols=268 Identities=18% Similarity=0.424 Sum_probs=214.3
Q ss_pred cccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee
Q 019847 16 DYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN 95 (335)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 95 (335)
...+.|++|+++.+++++.||.|+|||+++++... .+.+|...|++++| ++++|++|+.||.|++|++..+.....
T Consensus 15 ~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~--~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~ 90 (293)
T d1p22a2 15 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKR--ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT 90 (293)
T ss_dssp CCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEE--EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred CCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEE--EEecCCCCEeeeec--ccceeeccccccccccccccccccccc
Confidence 34577899988899999999999999999988754 55789999999887 678999999999999999999887777
Q ss_pred ecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCe--eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEc
Q 019847 96 LEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNN--VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWER 173 (335)
Q Consensus 96 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 173 (335)
...+...... +.+ ....++++..++.+.+|+...... ....+..|...+..+.+.+ ..+++++.|+.|++||+
T Consensus 91 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~ 165 (293)
T d1p22a2 91 LIHHCEAVLH--LRF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNT 165 (293)
T ss_dssp ECCCCSCEEE--EEC-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEET
T ss_pred cccccccccc--ccc-cccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecC
Confidence 6655444333 333 677899999999999999986553 3344567888888877764 47889999999999998
Q ss_pred cCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeee
Q 019847 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG 253 (335)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (335)
++. +.+..+.++...+..+.+++. .+++++ .|+.|++||+++.+.+.....+.... ..+++++.+++++
T Consensus 166 ~~~---~~~~~~~~~~~~v~~~~~~~~---~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~l~sg-- 234 (293)
T d1p22a2 166 STC---EFVRTLNGHKRGIACLQYRDR---LVVSGS--SDNTIRLWDIECGACLRVLEGHEELV-RCIRFDNKRIVSG-- 234 (293)
T ss_dssp TTC---CEEEEEECCSSCEEEEEEETT---EEEEEE--TTSCEEEEETTTCCEEEEECCCSSCE-EEEECCSSEEEEE--
T ss_pred CCC---cEEEEEcccccccccccCCCC---eEEEec--CCCEEEEEecccceeeeeecccceee-eeccccceEEEEE--
Confidence 764 456777788888888887653 455554 79999999999999988887654432 2355677788777
Q ss_pred eeeecCCCeEEEEECCC---------CceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEe
Q 019847 254 FSASGDGNKLCLWKYPN---------MTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 254 ~~~~~~~~~i~i~d~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
+.||.|++||+.. ...+..+.+|.+.|++++|+ +.+|++++.||+|++||
T Consensus 235 ----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 235 ----AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp ----ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred ----cCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 7799999999743 34567788999999999995 56899999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.3e-34 Score=235.55 Aligned_cols=264 Identities=15% Similarity=0.241 Sum_probs=200.0
Q ss_pred EEeecCCCCCc-eEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEe
Q 019847 51 LLQVPGEDDYP-TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHD 129 (335)
Q Consensus 51 ~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 129 (335)
..++++|...| +|++ +++++|++|+.||+|+|||+.+++++..+.+|.++|.+++|+| + ++|++|+.|+.|++|+
T Consensus 5 ~~tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~-~-~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-G-GILVSGSTDRTVRVWD 80 (355)
T ss_dssp EEEEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEET-T-TEEEEEETTCCEEEEE
T ss_pred cEEECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcC-C-CEEEEEeccccccccc
Confidence 45678998886 5555 4688999999999999999999999999999999999999987 4 5899999999999999
Q ss_pred cccCCeeeEEee-cCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCc------------------------------
Q 019847 130 VRVSNNVTSCIK-AHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSS------------------------------ 178 (335)
Q Consensus 130 ~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------------------------ 178 (335)
............ .+........+.++++++++++.|+.|++||++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d1nexb2 81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 160 (355)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred ccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence 986654333222 1223344556677888888888888888888654211
Q ss_pred ------------------------------ccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEE
Q 019847 179 ------------------------------SKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIH 228 (335)
Q Consensus 179 ------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~ 228 (335)
.+.+....++...+.++.++|++..+++.+ .|+.|++||++++..+.
T Consensus 161 ~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~ 237 (355)
T d1nexb2 161 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS---MDTTIRIWDLENGELMY 237 (355)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE---TTSCEEEEETTTCCEEE
T ss_pred cccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeeccc---ccceEEeeecccccccc
Confidence 111223344667788899999987555544 79999999999999998
Q ss_pred EeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeE-EcCCCCEEEEEeCCCcEE
Q 019847 229 GIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLS-QSPDGLTVATAGADETIR 306 (335)
Q Consensus 229 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~dg~v~ 306 (335)
.+..+ ..+.++.+++ ++++++ +.||.|++||+++..... ..|...+.++. +++++.+|++| .||.|+
T Consensus 238 ~~~~h~~~v~~~~~~~--~~l~~~------~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~ 306 (355)
T d1nexb2 238 TLQGHTALVGLLRLSD--KFLVSA------AADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSDNILVSG-SENQFN 306 (355)
T ss_dssp EECCCSSCCCEEEECS--SEEEEE------CTTSEEEEEETTTCCEEE--EEECTTCCCCCEEEECSSEEEEE-ETTEEE
T ss_pred cccccccccccccccc--ceeeee------ecccccccccccccceec--ccccCCceEEEEEcCCCCEEEEE-eCCEEE
Confidence 88764 5788888865 566666 789999999998877543 44556666654 56677766655 589999
Q ss_pred EEecCCCCCCC-Cccccccccccceec
Q 019847 307 FWEAFGPSGDE-DSVSHLAGLVSLKTS 332 (335)
Q Consensus 307 iw~~~~~~~~~-~~~~~~~~i~~~~~~ 332 (335)
+||+.+++... ...+|...|.++.++
T Consensus 307 vwd~~tg~~~~~~~~~~~~~V~~v~~~ 333 (355)
T d1nexb2 307 IYNLRSGKLVHANILKDADQIWSVNFK 333 (355)
T ss_dssp EEETTTCCBCCSCTTTTCSEEEEEEEE
T ss_pred EEECCCCCEEEEEecCCCCCEEEEEEc
Confidence 99999887664 456788888887764
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-34 Score=241.32 Aligned_cols=277 Identities=15% Similarity=0.179 Sum_probs=202.4
Q ss_pred cccccceeeeecCCceEEEecCCeEEEEEecCCce----eeEEeecCCCCCceEEEEc------C-CCCEEEEEECCCcE
Q 019847 14 MEDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKV----KKLLQVPGEDDYPTSVSWS------H-DAKTLAVGYMDSKL 82 (335)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~----~~~~~~~~~~~~v~~~~~~------~-~~~~l~~~~~dg~i 82 (335)
.+...+.+++++++.+++++.|+.|++||..+.+. ........|...+..+... + ++.++++++.||.|
T Consensus 12 ~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v 91 (393)
T d1sq9a_ 12 AHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 91 (393)
T ss_dssp CSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred cccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcE
Confidence 35667888999999999999999999999766542 1222333455444333321 1 33577899999999
Q ss_pred EEEeCCCceeEee----------ecccccceeEeeecCC----CCCEEEEeeCCCcEEEEecccCCe-------------
Q 019847 83 QLWDAETSKLVRN----------LEGHHRRVATSSWNHW----NGHILTSGSKDKSIINHDVRVSNN------------- 135 (335)
Q Consensus 83 ~iw~~~~~~~~~~----------~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~~~d~~~~~~------------- 135 (335)
++|++........ ...+...+..++|.+. .+.++++++.||.+++|++.....
T Consensus 92 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 171 (393)
T d1sq9a_ 92 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL 171 (393)
T ss_dssp EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEE
T ss_pred EEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccce
Confidence 9999754322111 1224456777777662 246899999999999999853221
Q ss_pred ----eeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccc---eeeccCCCCCeeEEEecCCCCcEEEEe
Q 019847 136 ----VTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKS---LHRFTDHCGGVKALAWSPHQVNVLATG 208 (335)
Q Consensus 136 ----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~ 208 (335)
.......+...+.+++|+|++ +||+|+.||.|++||+++...... ...+.+|..+|.+++|+|++.. ++++
T Consensus 172 ~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~-l~sg 249 (393)
T d1sq9a_ 172 ELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL-LAIA 249 (393)
T ss_dssp EEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE-EEEE
T ss_pred ecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccce-eeee
Confidence 011122345668899999987 899999999999999887543222 2345679999999999999964 5555
Q ss_pred cCCCCC---eEEEEECCCCceEEEee--------------cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC
Q 019847 209 GGREDG---CIKIWNVQKGTCIHGID--------------AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM 271 (335)
Q Consensus 209 ~g~~d~---~i~i~d~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~ 271 (335)
+ .|+ .|++||+++++.+..+. |...|.+++|+|++++++++ +.|+.|++||++++
T Consensus 250 s--~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~------s~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 250 H--DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA------GWDGKLRFWDVKTK 321 (393)
T ss_dssp E--EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE------ETTSEEEEEETTTT
T ss_pred c--CCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEE------CCCCEEEEEECCCC
Confidence 4 565 59999999999888774 34579999999999999988 78999999999999
Q ss_pred ceeecccCCCCcee----EeEEcCCCCEEEEEe
Q 019847 272 TKVGELQSSNSRIL----DLSQSPDGLTVATAG 300 (335)
Q Consensus 272 ~~~~~~~~~~~~i~----~~~~~~~~~~l~~~~ 300 (335)
+++.++++|.+.|. .++|+|++..+++++
T Consensus 322 ~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 322 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred CEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence 99999999988775 478888888776554
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.9e-34 Score=232.72 Aligned_cols=251 Identities=18% Similarity=0.232 Sum_probs=203.0
Q ss_pred CCceEEEEcCCCCEEEEEECCC-cEEEEeCCCc--eeEeeecccc-cceeEeeecCC-CCCEEEEeeCCCcEEEEecccC
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDS-KLQLWDAETS--KLVRNLEGHH-RRVATSSWNHW-NGHILTSGSKDKSIINHDVRVS 133 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg-~i~iw~~~~~--~~~~~~~~~~-~~v~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~ 133 (335)
..+++++|+|+++.|+.++.+. .|+.|+.... ..+..+.+|. ..|++++|+|. ++.+|++|+.||+|++||+...
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~ 97 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence 3568899999999999987554 3456665433 3456677774 67999999983 5679999999999999999754
Q ss_pred Cee-------eEEeecCCCCEEEEEeecCCCEEEEEeC--CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcE
Q 019847 134 NNV-------TSCIKAHSGEVCGLKWSNEGNLLASGGD--DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNV 204 (335)
Q Consensus 134 ~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 204 (335)
... ...+..|.++|.+++|+++++++++++. ++.+++|+.++ .+.+..+.+|...|.+++|+|+++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~ 174 (325)
T d1pgua1 98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS---GNSLGEVSGHSQRINACHLKQSRPMR 174 (325)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT---CCEEEECCSCSSCEEEEEECSSSSCE
T ss_pred cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecc---cccceeeeecccccccccccccccce
Confidence 422 2234568899999999999999988764 66799999765 45677888899999999999999888
Q ss_pred EEEecCCCCCeEEEEECCCCceEEEeec----CCcEeEEEeCCC-CceeeeeeeeeeecCCCeEEEEECCCCceeecccC
Q 019847 205 LATGGGREDGCIKIWNVQKGTCIHGIDA----KAQICGLEWNRH-HKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS 279 (335)
Q Consensus 205 ~~~~~g~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 279 (335)
+++++ .|+.+++||++..+....+.. ...+.+++|+|+ +.+++++ +.|+.|++||+++++.+..+.+
T Consensus 175 ~~~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~------~~d~~i~iwd~~~~~~~~~l~~ 246 (325)
T d1pgua1 175 SMTVG--DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV------GSDRKISCFDGKSGEFLKYIED 246 (325)
T ss_dssp EEEEE--TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE------ETTCCEEEEETTTCCEEEECCB
T ss_pred EEEee--cccccccccccccccceecccccCCCCccEEeeeccccceecccc------ccccceeeeeeccccccccccc
Confidence 87776 899999999998877666543 346999999997 4666665 7799999999999999999999
Q ss_pred CCCceeEeEEc---CCCCEEEEEeCCCcEEEEecCCCCCCCCcc
Q 019847 280 SNSRILDLSQS---PDGLTVATAGADETIRFWEAFGPSGDEDSV 320 (335)
Q Consensus 280 ~~~~i~~~~~~---~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 320 (335)
|..++.++.|+ |++++|++++.|+.|+|||+..++......
T Consensus 247 ~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~ 290 (325)
T d1pgua1 247 DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT 290 (325)
T ss_dssp TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred cccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEE
Confidence 99888777776 789999999999999999999876554433
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.3e-34 Score=239.72 Aligned_cols=263 Identities=16% Similarity=0.206 Sum_probs=198.0
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee------Eeeecccccce------eEeeecCCCCCEEEEee
Q 019847 53 QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL------VRNLEGHHRRV------ATSSWNHWNGHILTSGS 120 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------~~~~~~~~~~v------~~~~~~~~~~~~l~~~~ 120 (335)
..++|...|.++++++ +++++++.|++|+|||..+.+. ......|...+ ..+.....+..++++++
T Consensus 9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 86 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 86 (393)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence 3468999999999864 6899999999999999765432 11222233322 22233332445788999
Q ss_pred CCCcEEEEecccCCeeeEEe---------ecCCCCEEEEEeecC-----CCEEEEEeCCCeEEEEEccCCCcc-------
Q 019847 121 KDKSIINHDVRVSNNVTSCI---------KAHSGEVCGLKWSNE-----GNLLASGGDDNVVRIWERSKMSSS------- 179 (335)
Q Consensus 121 ~dg~i~~~d~~~~~~~~~~~---------~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~------- 179 (335)
.||.|++|++.......... ..+...+..++|.++ ++++++++.||.+++|++......
T Consensus 87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~ 166 (393)
T d1sq9a_ 87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 166 (393)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence 99999999987544321111 124456778888774 468999999999999998642210
Q ss_pred --------cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-------CCcEeEEEeCCC
Q 019847 180 --------KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-------KAQICGLEWNRH 244 (335)
Q Consensus 180 --------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-------~~~~~~~~~~~~ 244 (335)
........+...+.+++|+|++ ++++++ .|+.|++||+++++++..++. ..+|.+++|+|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs--~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 242 (393)
T d1sq9a_ 167 WSPTLELQGTVESPMTPSQFATSVDISERG--LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242 (393)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred eccceecccceecccCCCCcEEEEEECCCC--EEEEEe--CCCcEEEEeecccccccccccccccccccceEEEcccccc
Confidence 0112223455668999999997 667776 899999999999998877653 457999999999
Q ss_pred CceeeeeeeeeeecCCC---eEEEEECCCCceeeccc-------------CCCCceeEeEEcCCCCEEEEEeCCCcEEEE
Q 019847 245 HKEILSGHGFSASGDGN---KLCLWKYPNMTKVGELQ-------------SSNSRILDLSQSPDGLTVATAGADETIRFW 308 (335)
Q Consensus 245 ~~~~~~~~~~~~~~~~~---~i~i~d~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw 308 (335)
+++|+++ +.|+ .|++||+.+++.+..+. +|...|++++|+|++++|++++.|++|++|
T Consensus 243 g~~l~sg------s~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vW 316 (393)
T d1sq9a_ 243 GSLLAIA------HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 316 (393)
T ss_dssp TTEEEEE------EEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred cceeeee------cCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEE
Confidence 9999988 4454 59999999988776653 799999999999999999999999999999
Q ss_pred ecCCCCCCCCccccccccc
Q 019847 309 EAFGPSGDEDSVSHLAGLV 327 (335)
Q Consensus 309 ~~~~~~~~~~~~~~~~~i~ 327 (335)
|+.+++....+.+|...|.
T Consensus 317 d~~~g~~~~~l~gH~~~v~ 335 (393)
T d1sq9a_ 317 DVKTKERITTLNMHCDDIE 335 (393)
T ss_dssp ETTTTEEEEEEECCGGGCS
T ss_pred ECCCCCEEEEECCcCCccc
Confidence 9999988877888877664
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-33 Score=230.50 Aligned_cols=294 Identities=13% Similarity=0.111 Sum_probs=220.8
Q ss_pred CCCCcccccceeeeecCC--ceEEEecCCeEEEEEecCCcee-eEEeecCCCCCceEEEEcCC-CCEEEEEECCCcEEEE
Q 019847 10 APYLMEDYYSKVIDWGRN--NVLAVALGPVLFLWKWENGKVK-KLLQVPGEDDYPTSVSWSHD-AKTLAVGYMDSKLQLW 85 (335)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw 85 (335)
....+.+ .|++++|+++ .+++++.|++|+|||++++... ......+|..+|.+++|+|+ +.+|++|+.||.|++|
T Consensus 6 ~~~~h~d-~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 6 IEQAPKD-YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSS-CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred cCCCCCC-CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence 3344344 6899999974 5677789999999999876432 33344469999999999986 4588999999999999
Q ss_pred eCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEe---ecC--CCCEEEEEeecCCCEEE
Q 019847 86 DAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI---KAH--SGEVCGLKWSNEGNLLA 160 (335)
Q Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~--~~~i~~~~~~~~~~~l~ 160 (335)
++..+........+........+.+.+...+++++.++.+++||++......... ..+ ......+.+.+.+..++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI 164 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEE
T ss_pred ecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCcee
Confidence 9998877777665555554444433388999999999999999997654322222 111 22345567778889999
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceE------EEe----
Q 019847 161 SGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI------HGI---- 230 (335)
Q Consensus 161 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~------~~~---- 230 (335)
+++.|+.|++||++.............+...+.+..+.+.....+++++ .||.+.+|+....... ..+
T Consensus 165 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~dg~~~v~~~~~~~~~~~~~~~~~~~~~~ 242 (342)
T d1yfqa_ 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS--IDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242 (342)
T ss_dssp EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE--TTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred eecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeec--CCCeEEEEEecCCcceeeccccceeeeee
Confidence 9999999999999876655555555556667777788777667777776 8999999998654221 111
Q ss_pred ------ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCc
Q 019847 231 ------DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADET 304 (335)
Q Consensus 231 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 304 (335)
.+...+.+++|+|+++++++| +.||.|++||+.+++.+.++..+. .+..++|+|++++|++++.|+.
T Consensus 243 ~~~~~~~~~~~v~~l~~sp~~~~lasg------~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~~~~~l~~a~sdd~ 315 (342)
T d1yfqa_ 243 LNLKDTNLAYPVNSIEFSPRHKFLYTA------GSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDT 315 (342)
T ss_dssp CCTTCCSSCCCEEEEEECTTTCCEEEE------ETTSCEEEEETTTTEEEEECCCCS-SSEEEEEEECSSEEEEEEECTH
T ss_pred eccCCCcccccceeEEecCCccEEEEE------CCCCEEEEEECCCCcEEEEecCCC-CCEEEEEEeCCCEEEEEEcCCc
Confidence 112368899999999999988 789999999999999998886543 3456788889999999999999
Q ss_pred EEEEecCCC
Q 019847 305 IRFWEAFGP 313 (335)
Q Consensus 305 v~iw~~~~~ 313 (335)
+++|.....
T Consensus 316 ~~~~~~~~~ 324 (342)
T d1yfqa_ 316 FKTNAAIDQ 324 (342)
T ss_dssp HHHCSSSCT
T ss_pred EEEeeeeCC
Confidence 988876544
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=5.4e-33 Score=229.85 Aligned_cols=282 Identities=15% Similarity=0.070 Sum_probs=210.6
Q ss_pred eeecC--CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCC--cEEEEeCCCceeEeeec
Q 019847 22 IDWGR--NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDS--KLQLWDAETSKLVRNLE 97 (335)
Q Consensus 22 ~~~~~--~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~ 97 (335)
-+|+| +.+++.+.++.|++||.++++..+ + +|...|.+++|+|||++|++++.+. .|++||+++++.. .+.
T Consensus 8 ~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~---~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~ 82 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK---V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFE 82 (360)
T ss_dssp EEEEECGGGCEEEEETTEEEEECTTSSBEEE---C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECC
T ss_pred ccccCCCCCEEEEEECCeEEEEECCCCcEEE---c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Eee
Confidence 44564 578888889999999998887543 3 6899999999999999998877553 7999999887654 566
Q ss_pred ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEe----------CCCe
Q 019847 98 GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGG----------DDNV 167 (335)
Q Consensus 98 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~ 167 (335)
.|...+.+++|+| ++++|++++.++.+++|++.+... ...+..|...+.+++|+|++++|+.+. .++.
T Consensus 83 ~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~ 160 (360)
T d1k32a3 83 ENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160 (360)
T ss_dssp CCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred CCCceEEeeeecc-cccccceeccccccccccccccce-eeeeecccccccchhhccceeeeeeeccccccceeeccccc
Confidence 7999999999999 999999999999999999986654 566778889999999999999998654 3456
Q ss_pred EEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceE-------EEeec-CCcE---
Q 019847 168 VRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI-------HGIDA-KAQI--- 236 (335)
Q Consensus 168 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-------~~~~~-~~~~--- 236 (335)
+++||+.... ......+...+..+.|+|+|+.++..+ .++.+.+||....... ..+.. ....
T Consensus 161 ~~v~d~~~~~----~~~~~~~~~~~~~~~~spdg~~l~~~s---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (360)
T d1k32a3 161 IHVYDMEGRK----IFAATTENSHDYAPAFDADSKNLYYLS---YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPT 233 (360)
T ss_dssp EEEEETTTTE----EEECSCSSSBEEEEEECTTSCEEEEEE---SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGG
T ss_pred eeeeccccCc----eeeecccccccccccccCCCCEEEEEe---CCCceEcccccccceeeccccceEEEecccCccccc
Confidence 8999987632 333445677889999999998766654 6999999987554321 11111 0111
Q ss_pred ---------------------------------eEEEeCCCCceeeeee-------eeeeecCCCeEEEEECCCCceeec
Q 019847 237 ---------------------------------CGLEWNRHHKEILSGH-------GFSASGDGNKLCLWKYPNMTKVGE 276 (335)
Q Consensus 237 ---------------------------------~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~i~d~~~~~~~~~ 276 (335)
..+...+++...+... .+..++.++.+++||+.+++..
T Consensus 234 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-- 311 (360)
T d1k32a3 234 KLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-- 311 (360)
T ss_dssp GCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE--
T ss_pred eECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE--
Confidence 1122222211111110 1334567889999999887653
Q ss_pred ccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccc
Q 019847 277 LQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVS 321 (335)
Q Consensus 277 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 321 (335)
.|.+.|.+++|+|||++|++++.||.|++||+..++.+.....
T Consensus 312 --~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~ 354 (360)
T d1k32a3 312 --EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVET 354 (360)
T ss_dssp --EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCC
T ss_pred --EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEe
Confidence 3456699999999999999999999999999998877654433
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.5e-32 Score=219.11 Aligned_cols=267 Identities=13% Similarity=0.183 Sum_probs=198.9
Q ss_pred ccccceeeeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEe
Q 019847 15 EDYYSKVIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR 94 (335)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 94 (335)
+...+++++|++ +++++.||.|++||+.++ ..+|...|.++++++++ .+++++.|+++++|++.+.+
T Consensus 12 H~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~-------~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~--- 78 (287)
T d1pgua2 12 HNKGITALTVNP--LISGSYDGRIMEWSSSSM-------HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE--- 78 (287)
T ss_dssp CSSCEEEEETTT--TEEEETTSCEEETTTTEE-------ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE---
T ss_pred CCCceEEEEECc--EEEEeCCCeEEEEECCCC-------CCCCCCCEEEEEecCCC-eEEEEeeccccccccccccc---
Confidence 567889999987 999999999999998653 24799999999998765 57899999999999875432
Q ss_pred eecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC-eEEEEEc
Q 019847 95 NLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN-VVRIWER 173 (335)
Q Consensus 95 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~ 173 (335)
....+..+.+.+ ++..+++ +.++.+.+|+..+.... ..+. +...+ .+++++++.+++++.++ .+++|++
T Consensus 79 ----~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~-~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~ 148 (287)
T d1pgua2 79 ----FGSQPKVASANN-DGFTAVL-TNDDDLLILQSFTGDII-KSVR-LNSPG--SAVSLSQNYVAVGLEEGNTIQVFKL 148 (287)
T ss_dssp ----CSSCEEEEEECS-SSEEEEE-ETTSEEEEEETTTCCEE-EEEE-CSSCE--EEEEECSSEEEEEETTTSCEEEEET
T ss_pred ----cccceeeeeecc-CCceEEE-eecccceeeeccceeee-eecc-cccee--eeeeccCcceeeeccccceeeeeec
Confidence 234566777876 6655555 55667888998766543 3333 33344 45667788888888775 6999997
Q ss_pred cCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEe-e-cCCcEeEEEeCCCCceeeee
Q 019847 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGI-D-AKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 251 (335)
..... .......+..++++++|+|++.+++ +++ .||.|++||+.+++..... . +..++.+++|+|.+......
T Consensus 149 ~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~-~g~--~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 223 (287)
T d1pgua2 149 SDLEV--SFDLKTPLRAKPSYISISPSETYIA-AGD--VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE 223 (287)
T ss_dssp TEEEE--EEECSSCCSSCEEEEEECTTSSEEE-EEE--TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred cccce--eeeeeeccCCceeEEEeccCccccc-ccc--ccccccceeecccccccccccccccccceeeecccccccccc
Confidence 65322 2223345778899999999997554 444 7999999999998876543 3 35679999999876543221
Q ss_pred ----eeeeeecCCCeEEEEECCC-CceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEec
Q 019847 252 ----HGFSASGDGNKLCLWKYPN-MTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEA 310 (335)
Q Consensus 252 ----~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~ 310 (335)
..+++++.|+.|++||+++ .+.+..+.+|...|++++|+|++ .|++++.||.|++|++
T Consensus 224 ~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred cCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 1244458899999999977 55677788999999999999987 5889999999999986
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-31 Score=220.11 Aligned_cols=260 Identities=22% Similarity=0.382 Sum_probs=194.0
Q ss_pred eEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEe
Q 019847 50 KLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHD 129 (335)
Q Consensus 50 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 129 (335)
....+++|.+.|.+ +++++|++||+|+.||+|+|||+.+++++..+.+|...|.+++|+| ++|++|+.|+.+++|+
T Consensus 8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~---~~l~s~s~D~~~~~~~ 83 (342)
T d2ovrb2 8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWN 83 (342)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEE
T ss_pred cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC---Cccccceecccccccc
Confidence 34456799999865 4677899999999999999999999999999999999999999976 4999999999999999
Q ss_pred cccCCeeeEEeecCCCCEE--------------------------------------EEEeecCCCEEEEEeCCCeEEEE
Q 019847 130 VRVSNNVTSCIKAHSGEVC--------------------------------------GLKWSNEGNLLASGGDDNVVRIW 171 (335)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~--------------------------------------~~~~~~~~~~l~~~~~dg~i~iw 171 (335)
........ ....+...+. .....+....+++++.|+.|++|
T Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 162 (342)
T d2ovrb2 84 AETGECIH-TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 162 (342)
T ss_dssp TTTTEEEE-EECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEE
T ss_pred ccccccee-cccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEe
Confidence 86433211 1111111111 11223455678888899999999
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILS 250 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (335)
|.+. ...+..+.+|...+..+.+ ++. .+++++ .||.|++||++.++++..+..+ ..+.++.++ ++++++
T Consensus 163 d~~~---~~~~~~~~~~~~~~~~~~~--~~~-~l~s~~--~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s 232 (342)
T d2ovrb2 163 DPET---ETCLHTLQGHTNRVYSLQF--DGI-HVVSGS--LDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVS 232 (342)
T ss_dssp EGGG---TEEEEEECCCSSCEEEEEE--CSS-EEEEEE--TTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEE
T ss_pred eccc---ceeeEEEcCcccccccccC--CCC-EEEEEe--CCCeEEEeecccceeeeEecccccceeEEecC--CCEEEE
Confidence 9765 3456677777776666555 454 455555 8999999999999998888764 456666665 457776
Q ss_pred eeeeeeecCCCeEEEEECCCCceeecccC---CCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCc-----ccc
Q 019847 251 GHGFSASGDGNKLCLWKYPNMTKVGELQS---SNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDS-----VSH 322 (335)
Q Consensus 251 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-----~~~ 322 (335)
+ +.|+.|++||....+....+.. |...+.++.++ ++++++|+.||.|++||+.+++..... .+|
T Consensus 233 ~------s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~ 304 (342)
T d2ovrb2 233 G------NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 304 (342)
T ss_dssp E------ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG
T ss_pred E------cCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCC
Confidence 6 7799999999999888776654 45566666665 459999999999999999987664433 356
Q ss_pred ccccccceec
Q 019847 323 LAGLVSLKTS 332 (335)
Q Consensus 323 ~~~i~~~~~~ 332 (335)
...|.++.++
T Consensus 305 ~~~v~~v~~s 314 (342)
T d2ovrb2 305 GGVVWRIRAS 314 (342)
T ss_dssp TCEEEEEEEC
T ss_pred CCCEEEEEEC
Confidence 6667776654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-32 Score=224.51 Aligned_cols=268 Identities=10% Similarity=0.066 Sum_probs=192.8
Q ss_pred eecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeE---eeecccccceeEeeecCCCCCEEEEeeCCCcEEEEe
Q 019847 53 QVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLV---RNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHD 129 (335)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d 129 (335)
-.++|++.|++++|+|++++||+|+.||+|+|||++++... .....|..+|.+++|+|.++.+|++|+.||.|++|+
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~ 85 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence 34689999999999999999999999999999999765432 223358999999999986677999999999999999
Q ss_pred cccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccce-eeccCC--CCCeeEEEecCCCCcEEE
Q 019847 130 VRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL-HRFTDH--CGGVKALAWSPHQVNVLA 206 (335)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~--~~~v~~~~~~~~~~~~~~ 206 (335)
+............+........+.++...+++++.|+.+++||++........ .....+ ........+.+.+..++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (342)
T d1yfqa_ 86 LIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIV 165 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceee
Confidence 98777655544445555566667778899999999999999998754332222 122222 223445666677654444
Q ss_pred EecCCCCCeEEEEECCCCceEEEe----ecCCcEeEEEeCC-CCceeeeeeeeeeecCCCeEEEEECCCCceee------
Q 019847 207 TGGGREDGCIKIWNVQKGTCIHGI----DAKAQICGLEWNR-HHKEILSGHGFSASGDGNKLCLWKYPNMTKVG------ 275 (335)
Q Consensus 207 ~~~g~~d~~i~i~d~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~------ 275 (335)
++ .|+.|++||++..+..... .......+..+.+ ++..++++ +.||.+.+|+........
T Consensus 166 -~~--~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------s~dg~~~v~~~~~~~~~~~~~~~~ 236 (342)
T d1yfqa_ 166 -GM--NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS------SIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp -EE--STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE------ETTSEEEEEECCTTCCSTTCTTCE
T ss_pred -ec--CCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEee------cCCCeEEEEEecCCcceeeccccc
Confidence 44 7999999999876543322 2233455555444 45555555 679999999986533221
Q ss_pred ---------cccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCcc-ccccccccc
Q 019847 276 ---------ELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSV-SHLAGLVSL 329 (335)
Q Consensus 276 ---------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~i~~~ 329 (335)
....|...+++++|+|++++|++|+.||.|++||+.+++...... .|...+.++
T Consensus 237 ~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~ 300 (342)
T d1yfqa_ 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKI 300 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEE
T ss_pred eeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEE
Confidence 123566679999999999999999999999999999876554443 233334443
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-30 Score=208.87 Aligned_cols=259 Identities=17% Similarity=0.332 Sum_probs=204.7
Q ss_pred EEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEec
Q 019847 51 LLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDV 130 (335)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~ 130 (335)
+.....|...|+|++ +++++||+|+.||+|+|||+++++++..+++|...|++++| ++++|++|+.|+.|++|++
T Consensus 8 i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~---~~~~l~s~s~D~~i~~~~~ 82 (293)
T d1p22a2 8 IHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDV 82 (293)
T ss_dssp EECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEES
T ss_pred EeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec---ccceeeccccccccccccc
Confidence 334457888899865 48999999999999999999999999999999999999988 5689999999999999999
Q ss_pred ccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecC
Q 019847 131 RVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGG 210 (335)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 210 (335)
..+..... ...+.... ..+.+....++++..++.+.+||............+..|...+..+.+.+. .+.+++
T Consensus 83 ~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s- 155 (293)
T d1p22a2 83 NTGEMLNT-LIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSAS- 155 (293)
T ss_dssp SSCCEEEE-ECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT---EEEEEE-
T ss_pred cccccccc-cccccccc--ccccccccceeecccccceeEeeccccccccccccccccccccccceeccc---cccccc-
Confidence 87665433 33333332 344566678999999999999999877666667777788888988888764 334444
Q ss_pred CCCCeEEEEECCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEE
Q 019847 211 REDGCIKIWNVQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQ 289 (335)
Q Consensus 211 ~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 289 (335)
.|+.+++||+++++.+..+..+ ..+..+.++ +..++++ +.|+.|++||+++.+.+....+|...+.. +
T Consensus 156 -~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~------~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~ 224 (293)
T d1p22a2 156 -GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSG------SSDNTIRLWDIECGACLRVLEGHEELVRC--I 224 (293)
T ss_dssp -TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEE------ETTSCEEEEETTTCCEEEEECCCSSCEEE--E
T ss_pred -CCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEe------cCCCEEEEEecccceeeeeecccceeeee--c
Confidence 7999999999999998888754 456666654 4566665 67999999999999999999999887765 4
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCCCC---------CCccccccccccceec
Q 019847 290 SPDGLTVATAGADETIRFWEAFGPSGD---------EDSVSHLAGLVSLKTS 332 (335)
Q Consensus 290 ~~~~~~l~~~~~dg~v~iw~~~~~~~~---------~~~~~~~~~i~~~~~~ 332 (335)
++++.+|++++.||.|++||+...... ....+|.+.|.++.++
T Consensus 225 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d 276 (293)
T d1p22a2 225 RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD 276 (293)
T ss_dssp ECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC
T ss_pred cccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc
Confidence 567789999999999999998654322 1234677788777653
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.9e-31 Score=211.50 Aligned_cols=251 Identities=16% Similarity=0.124 Sum_probs=195.3
Q ss_pred eeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEE
Q 019847 48 VKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIIN 127 (335)
Q Consensus 48 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 127 (335)
-+.+..+.+|..+|++++|+| |++|+.||+|++||+.++. ..|...|.++.+++ +..+++++.|+++++
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~--~~~~~s~s~D~~v~~ 71 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSK--AQEYSSISWDDTLKV 71 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCS--TTCCEEEETTTEEEE
T ss_pred cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecC--CCeEEEEeecccccc
Confidence 345667889999999999987 9999999999999987643 46889999999986 456899999999999
Q ss_pred EecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEE
Q 019847 128 HDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLAT 207 (335)
Q Consensus 128 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 207 (335)
|++... .....+..+++++++..++++ .++.+.+|+..... .+..+. ...++ .+++|++..+++.
T Consensus 72 w~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~-~~~~~--~~~~~~~~~~~v~ 136 (287)
T d1pgua2 72 NGITKH--------EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGD---IIKSVR-LNSPG--SAVSLSQNYVAVG 136 (287)
T ss_dssp TTEEEE--------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCC---EEEEEE-CSSCE--EEEEECSSEEEEE
T ss_pred cccccc--------ccccceeeeeeccCCceEEEe-ecccceeeecccee---eeeecc-cccee--eeeeccCcceeee
Confidence 997632 234567788888887766665 46678899976643 344333 22333 4566777666665
Q ss_pred ecCCCCCeEEEEECCCCceEEEee--cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceee-cccCCCCce
Q 019847 208 GGGREDGCIKIWNVQKGTCIHGID--AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVG-ELQSSNSRI 284 (335)
Q Consensus 208 ~~g~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~i 284 (335)
+. .++.+++|++...+....+. ...++.+++|+|++.+++++ +.||.|++||+.+++... .+..|..+|
T Consensus 137 ~~--~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g------~~dg~i~i~d~~~~~~~~~~~~~h~~~v 208 (287)
T d1pgua2 137 LE--EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG------DVMGKILLYDLQSREVKTSRWAFRTSKI 208 (287)
T ss_dssp ET--TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEE------ETTSCEEEEETTTTEEEECCSCCCSSCE
T ss_pred cc--ccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccc------cccccccceeeccccccccccccccccc
Confidence 54 55689999998776655554 34679999999999999988 679999999999988754 467899999
Q ss_pred eEeEEcCC----------CCEEEEEeCCCcEEEEecCCCCCC-CCccccccccccceec
Q 019847 285 LDLSQSPD----------GLTVATAGADETIRFWEAFGPSGD-EDSVSHLAGLVSLKTS 332 (335)
Q Consensus 285 ~~~~~~~~----------~~~l~~~~~dg~v~iw~~~~~~~~-~~~~~~~~~i~~~~~~ 332 (335)
++++|+|+ +.+|++|+.|+.|++|++..+... ....+|...|.++.++
T Consensus 209 ~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~ 267 (287)
T d1pgua2 209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE 267 (287)
T ss_dssp EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEE
T ss_pred ceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEEC
Confidence 99999874 468999999999999999875443 4456788889888764
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.97 E-value=3.6e-28 Score=195.68 Aligned_cols=272 Identities=12% Similarity=0.132 Sum_probs=214.6
Q ss_pred EEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEE-EEECCCcEEEEeCCCceeEeeecccccceeEeee
Q 019847 30 LAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLA-VGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSW 108 (335)
Q Consensus 30 ~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 108 (335)
++.+.+++|.+||+++++....+.+. ..+..++|+|||++|+ +++.++.|++||+.+++.+..+..+. .+..+.|
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g---~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~ 81 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVG---SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV 81 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS---SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred EEECCCCEEEEEECCCCeEEEEEECC---CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccc
Confidence 44568899999999999987766643 4578999999999885 55678999999999999999887664 5688999
Q ss_pred cCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEE-EeCCCeEEEEEccCCCcccceeeccC
Q 019847 109 NHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLAS-GGDDNVVRIWERSKMSSSKSLHRFTD 187 (335)
Q Consensus 109 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~ 187 (335)
++.....++++..++.+.+|+..+... ...+. +.....++.++|+++.++. +..++.+.+|+..+.. ....+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~- 155 (301)
T d1l0qa2 82 SPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA---VINTVS- 155 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEE-
T ss_pred ccccccccccccccceeeeccccccee-eeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccc---eeeecc-
Confidence 993344556667788999999986554 44343 4567788999999987754 5567889999977643 344433
Q ss_pred CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEE
Q 019847 188 HCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK 267 (335)
Q Consensus 188 ~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 267 (335)
+...+..+.++|++..++++.. .++.+.+|+....+..........+..+.+++++..++.+. ....++.|.+||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~---~~~~~~~v~v~D 230 (301)
T d1l0qa2 156 VGRSPKGIAVTPDGTKVYVANF--DSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTN---VDKYFNTVSMID 230 (301)
T ss_dssp CCSSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEE---ECSSCCEEEEEE
T ss_pred cCCCceEEEeeccccceeeecc--cccccccccccceeeeecccccCCcceeecccccccccccc---ccceeeeeeeee
Confidence 3456788999999988888775 67889999999888888888888899999999999887642 224568899999
Q ss_pred CCCCceeecccCCCCceeEeEEcCCCCEE-EEEeCCCcEEEEecCCCCCCC
Q 019847 268 YPNMTKVGELQSSNSRILDLSQSPDGLTV-ATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~ 317 (335)
..+++.+..+..+. .+.+++|+|||++| ++++.|+.|++||+.+++...
T Consensus 231 ~~t~~~~~~~~~~~-~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~ 280 (301)
T d1l0qa2 231 TGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA 280 (301)
T ss_dssp TTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cCCCeEEEEEcCCC-CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence 99999988876544 57999999999987 577789999999998876543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=6.4e-28 Score=203.99 Aligned_cols=280 Identities=7% Similarity=0.004 Sum_probs=197.5
Q ss_pred EEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee-----eccccccee
Q 019847 30 LAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN-----LEGHHRRVA 104 (335)
Q Consensus 30 ~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-----~~~~~~~v~ 104 (335)
++...||.|++||+.+++.+..+. .| ..+..++|+|||++|++++.||.|++||+.+++.... ..+|...+.
T Consensus 36 V~~~~dg~v~vwD~~t~~~~~~l~--~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 36 VTLRDAGQIALVDGDSKKIVKVID--TG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp EEETTTTEEEEEETTTCSEEEEEE--CC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEEcCCCEEEEEECCCCcEEEEEe--CC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence 445578999999999999866554 44 4589999999999999999999999999998864332 235667788
Q ss_pred EeeecCCCCCEE-EEeeCCCcEEEEecccCCeeeEEeecC-----------CCCEEEEEeecCCCEEEEEeCC-CeEEEE
Q 019847 105 TSSWNHWNGHIL-TSGSKDKSIINHDVRVSNNVTSCIKAH-----------SGEVCGLKWSNEGNLLASGGDD-NVVRIW 171 (335)
Q Consensus 105 ~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~l~~~~~d-g~i~iw 171 (335)
+++|+| +++++ +++..++.+.+||..+... ......| ......+..++++..++....+ +.+.++
T Consensus 113 s~~~sp-DG~~l~v~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~ 190 (426)
T d1hzua2 113 SKFKGY-EDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV 190 (426)
T ss_dssp CCSTTC-TTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred eeeecC-CCCEEEEeecCCCeEEEEcCCccce-eEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 889999 88876 5556889999999987654 3333333 3445566667776666655443 455566
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEE-----------------------
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIH----------------------- 228 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~----------------------- 228 (335)
+...... .......+...+..+.|+|++++++++.. .+..+.+++..+++.+.
T Consensus 191 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (426)
T d1hzua2 191 NYKDIDN--LTVTSIGAAPFLADGGWDSSHRYFMTAAN--NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGP 266 (426)
T ss_dssp ECSSSSS--CEEEEEECCSSEEEEEECTTSCEEEEEET--TCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEE
T ss_pred Eeccccc--eeeEEeccCCccEeeeECCCCcEEEeeee--cccceeeeecccccEEEEeccCCcccccceeeeecCCCCc
Confidence 5544322 12223346677889999999988888765 66677777766554332
Q ss_pred -------------------------------Eeec-CCcEeEEEeCCCCceeeeeeeee-eecCCCeEEEEECCCCceee
Q 019847 229 -------------------------------GIDA-KAQICGLEWNRHHKEILSGHGFS-ASGDGNKLCLWKYPNMTKVG 275 (335)
Q Consensus 229 -------------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~d~~~~~~~~ 275 (335)
.++. ...+..++|+|+++++++...+. .+..+++|++||+.+++...
T Consensus 267 ~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~ 346 (426)
T d1hzua2 267 VWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY 346 (426)
T ss_dssp EEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCC
T ss_pred eEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCe
Confidence 2222 22467789999999998542211 22457899999999988765
Q ss_pred cc---------cCCCCceeEeEEcCCCCEEEEE-----eCCCcEEEEecCCCCCCCC
Q 019847 276 EL---------QSSNSRILDLSQSPDGLTVATA-----GADETIRFWEAFGPSGDED 318 (335)
Q Consensus 276 ~~---------~~~~~~i~~~~~~~~~~~l~~~-----~~dg~v~iw~~~~~~~~~~ 318 (335)
++ ..|...+.+++|||||++++.+ +.+|.|+|||..+.+....
T Consensus 347 ~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~ 403 (426)
T d1hzua2 347 QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV 403 (426)
T ss_dssp EEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEE
T ss_pred EEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEE
Confidence 43 3456679999999999877432 4688999999998765443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=2.2e-27 Score=193.99 Aligned_cols=275 Identities=13% Similarity=0.091 Sum_probs=202.8
Q ss_pred CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEE-EEECCCcEEEEeCCCceeEeeecccc-----
Q 019847 27 NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLA-VGYMDSKLQLWDAETSKLVRNLEGHH----- 100 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~----- 100 (335)
+.+++++.|++|.+||+++++....+....+...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 457888899999999999999888887777777789999999999885 56678999999999999988876543
Q ss_pred cceeEeeecCCCCCEEEEee------------CCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeE
Q 019847 101 RRVATSSWNHWNGHILTSGS------------KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVV 168 (335)
Q Consensus 101 ~~v~~~~~~~~~~~~l~~~~------------~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 168 (335)
..+..++|+| +++.++++. .++.+.+||..+... ...+. +...+..++|+|+++++++++.+ +
T Consensus 82 ~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~--~ 156 (337)
T d1pbyb_ 82 KSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFE-APRQITMLAWARDGSKLYGLGRD--L 156 (337)
T ss_dssp ECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEE-CCSSCCCEEECTTSSCEEEESSS--E
T ss_pred cceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccccCCeE-EEecc-ccCCceEEEEcCCCCEEEEEcCC--c
Confidence 3466889999 888887775 356788899886554 33333 45667889999999999998654 6
Q ss_pred EEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEE-------------EEec--------CCCCCeEEEEECCCCceE
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVL-------------ATGG--------GREDGCIKIWNVQKGTCI 227 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------------~~~~--------g~~d~~i~i~d~~~~~~~ 227 (335)
.+||...... ...+..+.. .....+.|++..+. .... +..++.+.+||..++...
T Consensus 157 ~~~d~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (337)
T d1pbyb_ 157 HVMDPEAGTL---VEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232 (337)
T ss_dssp EEEETTTTEE---EEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred ceeeeecCcE---EEEeecCCc-cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEE
Confidence 7899765432 222221111 11111122211110 0000 113567999999988765
Q ss_pred EEe--ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcE
Q 019847 228 HGI--DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETI 305 (335)
Q Consensus 228 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 305 (335)
... ........+.++|++..++.. ++.+++||+.+++.+..+. +...+.+++|+|||++|++++.||.|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i 303 (337)
T d1pbyb_ 233 MREVRIMDVFYFSTAVNPAKTRAFGA--------YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDL 303 (337)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEE--------ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEE
T ss_pred EEEecCCCcceEEEEecccceEEEEc--------cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 432 335567888999999988765 7899999999999988875 45568999999999999999999999
Q ss_pred EEEecCCCCCCCCc
Q 019847 306 RFWEAFGPSGDEDS 319 (335)
Q Consensus 306 ~iw~~~~~~~~~~~ 319 (335)
++||..+.+.....
T Consensus 304 ~v~D~~t~~~v~~i 317 (337)
T d1pbyb_ 304 AAYDAETLEKKGQV 317 (337)
T ss_dssp EEEETTTCCEEEEE
T ss_pred EEEECCCCcEEEEE
Confidence 99999987765544
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=1.2e-26 Score=195.80 Aligned_cols=276 Identities=8% Similarity=-0.020 Sum_probs=193.3
Q ss_pred EEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCcee--Eee---eccccccee
Q 019847 30 LAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKL--VRN---LEGHHRRVA 104 (335)
Q Consensus 30 ~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~---~~~~~~~v~ 104 (335)
++.+.+++|.|||.++++.+..+. .+ ..+..++|+|||+++++++.||.+++||+.+++. ..+ ...|...+.
T Consensus 36 v~~~d~g~v~v~D~~t~~v~~~~~--~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~ 112 (432)
T d1qksa2 36 VTLRDAGQIALIDGSTYEIKTVLD--TG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 112 (432)
T ss_dssp EEETTTTEEEEEETTTCCEEEEEE--CS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred EEEcCCCEEEEEECCCCcEEEEEe--CC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence 556688999999999999877665 34 3589999999999999999999999999988753 223 335667778
Q ss_pred EeeecCCCCCEE-EEeeCCCcEEEEecccCCeeeEEe----------ecCCCCEEEEEeecCCCEEE-EEeCCCeEEEEE
Q 019847 105 TSSWNHWNGHIL-TSGSKDKSIINHDVRVSNNVTSCI----------KAHSGEVCGLKWSNEGNLLA-SGGDDNVVRIWE 172 (335)
Q Consensus 105 ~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~----------~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~iwd 172 (335)
+..|+| ++++| +++..++.+++||..+.+...... ..+......+.++|++..++ +...++.|.+||
T Consensus 113 s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d 191 (432)
T d1qksa2 113 SKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 191 (432)
T ss_dssp CCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred ecccCC-CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence 888999 88765 778889999999998766533221 12455677889999988764 556679999999
Q ss_pred ccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC------------------
Q 019847 173 RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA------------------ 234 (335)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~------------------ 234 (335)
........ +..+ .+...+..+.|+|++.++++++. .++.+.++|.++++.+..+....
T Consensus 192 ~~~~~~~~-~~~i-~~g~~~~~~~~spdg~~~~va~~--~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 267 (432)
T d1qksa2 192 YTDLNNLK-TTEI-SAERFLHDGGLDGSHRYFITAAN--ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGP 267 (432)
T ss_dssp TTCSSEEE-EEEE-ECCSSEEEEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEE
T ss_pred ccCCCcce-EEEE-cccCccccceECCCCCEEEEecc--ccceEEEeecccceEEEEeccCccccccCcccceecCCCCc
Confidence 77644322 2222 24456889999999998888876 78899999998776654432110
Q ss_pred ---------------------------cEeEEEeCCCCceeeeee-----------------------------eeeeec
Q 019847 235 ---------------------------QICGLEWNRHHKEILSGH-----------------------------GFSASG 258 (335)
Q Consensus 235 ---------------------------~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~ 258 (335)
.+....++|++..++++. .+++++
T Consensus 268 ~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s 347 (432)
T d1qksa2 268 VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDG 347 (432)
T ss_dssp EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSS
T ss_pred eecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccc
Confidence 122233444443333221 123344
Q ss_pred CCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEe-----CCCcEEEEecCCCCCC
Q 019847 259 DGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAG-----ADETIRFWEAFGPSGD 316 (335)
Q Consensus 259 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~v~iw~~~~~~~~ 316 (335)
.|+.+++|++.++. .+..|...+.+++|+|||++++.+. .+|.|+|||..+.+..
T Consensus 348 ~d~~~k~w~~~~~~---~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~ 407 (432)
T d1qksa2 348 SDPEFKTLPIAEWA---GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 407 (432)
T ss_dssp SCCCEEEECHHHHH---TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred cCCceEeccccccc---ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEE
Confidence 45555555543322 2335667899999999999886553 5789999999887653
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=2.3e-26 Score=189.65 Aligned_cols=256 Identities=11% Similarity=0.097 Sum_probs=189.5
Q ss_pred cccccceeeeecCC--ceEEEecCC--eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 019847 14 MEDYYSKVIDWGRN--NVLAVALGP--VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET 89 (335)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~~~~~~~--~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 89 (335)
.+...+.+++|+++ .+++++.+. .|++||.++++.. .+..|...|.+++|+|++++|++++.++.+++|++.+
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~---~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~ 116 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE---KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET 116 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE---ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE---EeeCCCceEEeeeecccccccceeccccccccccccc
Confidence 35567889999995 355555443 7999999988753 4567899999999999999999999999999999999
Q ss_pred ceeEeeecccccceeEeeecCCCCCEEEEee----------CCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEE
Q 019847 90 SKLVRNLEGHHRRVATSSWNHWNGHILTSGS----------KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLL 159 (335)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 159 (335)
++....+..+...+.+++|+| ++++|+.+. .++.+++||+.+++. .....+...+..++|+|+|++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~--~~~~~~~~~~~~~~~spdg~~l 193 (360)
T d1k32a3 117 GKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI--FAATTENSHDYAPAFDADSKNL 193 (360)
T ss_dssp CCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE--EECSCSSSBEEEEEECTTSCEE
T ss_pred cceeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCce--eeecccccccccccccCCCCEE
Confidence 999999999999999999999 899888543 445789999986543 3345677888999999999999
Q ss_pred EEEeCCCeEEEEEccCCCcc----cce------------------------------------eeccCCCCCeeEEEecC
Q 019847 160 ASGGDDNVVRIWERSKMSSS----KSL------------------------------------HRFTDHCGGVKALAWSP 199 (335)
Q Consensus 160 ~~~~~dg~i~iwd~~~~~~~----~~~------------------------------------~~~~~~~~~v~~~~~~~ 199 (335)
++++.++.+.+||....... ... ..+....+....+...+
T Consensus 194 ~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (360)
T d1k32a3 194 YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE 273 (360)
T ss_dssp EEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS
T ss_pred EEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecC
Confidence 99999999999985432100 000 00001112223344333
Q ss_pred CCCcEEEE----------ecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECC
Q 019847 200 HQVNVLAT----------GGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYP 269 (335)
Q Consensus 200 ~~~~~~~~----------~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 269 (335)
++...+.. .++..++.+++||+.+++.... ...+..++|+|||++++++ +.||.|++||++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~~v~~~~~SpDG~~l~~~------~~Dg~i~v~d~~ 344 (360)
T d1k32a3 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV---KNNLTDLRLSADRKTVMVR------KDDGKIYTFPLE 344 (360)
T ss_dssp SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE---EEEEEEEEECTTSCEEEEE------ETTSCEEEEESS
T ss_pred CCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEe---cCCcCEEEECCCCCEEEEE------ECCCeEEEEECC
Confidence 32211111 1133688999999998765322 3468899999999999987 779999999999
Q ss_pred CCceeecccCCCCce
Q 019847 270 NMTKVGELQSSNSRI 284 (335)
Q Consensus 270 ~~~~~~~~~~~~~~i 284 (335)
+++...++..+..++
T Consensus 345 ~~~~~~~~~~d~~~~ 359 (360)
T d1k32a3 345 KPEDERTVETDKRPL 359 (360)
T ss_dssp CTTSCEECCCCSSCE
T ss_pred CCCcceEEEeccccc
Confidence 998887776555443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.94 E-value=1.2e-24 Score=178.14 Aligned_cols=278 Identities=9% Similarity=-0.007 Sum_probs=196.0
Q ss_pred CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEE-EECCCcEEEEeCCCceeEeeecccc-----
Q 019847 27 NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAV-GYMDSKLQLWDAETSKLVRNLEGHH----- 100 (335)
Q Consensus 27 ~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~----- 100 (335)
+.+++++.++.|.+||+++++....+.++ |...+.+++|+|||+++++ +..++.|++||+.+++.+..+....
T Consensus 9 ~~l~~~~~~~~v~v~D~~t~~~~~t~~~~-~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~ 87 (346)
T d1jmxb_ 9 EYMIVTNYPNNLHVVDVASDTVYKSCVMP-DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV 87 (346)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECS-SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred cEEEEEcCCCEEEEEECCCCCEEEEEEcC-CCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccccccc
Confidence 46777889999999999999987766654 4556789999999998755 4578999999999999887765322
Q ss_pred -cceeEeeecCCCCCEEEEee------------CCCcEEEEecccCCeeeEE-eecCCCCEEEEEeecCCCEEEEEeCCC
Q 019847 101 -RRVATSSWNHWNGHILTSGS------------KDKSIINHDVRVSNNVTSC-IKAHSGEVCGLKWSNEGNLLASGGDDN 166 (335)
Q Consensus 101 -~~v~~~~~~~~~~~~l~~~~------------~dg~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg 166 (335)
..+..++|+| +++.+++++ .++.+.+|+..++...... .......+..+.+++++.++++ ++
T Consensus 88 ~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 163 (346)
T d1jmxb_ 88 GRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GP 163 (346)
T ss_dssp EECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE---SS
T ss_pred CCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe---CC
Confidence 3467899999 888887765 4677889998765542211 1122344556667777766654 34
Q ss_pred eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEec-----------------------CCCCCeEEEEECCC
Q 019847 167 VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG-----------------------GREDGCIKIWNVQK 223 (335)
Q Consensus 167 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------------------g~~d~~i~i~d~~~ 223 (335)
.+.+|++.+.. .+..+..+ .....+.++|++..++.... +..+..+.+||+.+
T Consensus 164 ~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (346)
T d1jmxb_ 164 DIYKMDVKTGK---YTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT 239 (346)
T ss_dssp SEEEECTTTCC---EEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTT
T ss_pred cceEEEccCCC---EEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCC
Confidence 58889976543 23333222 22333444454433222111 11355688888888
Q ss_pred CceEEEe--ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeC
Q 019847 224 GTCIHGI--DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA 301 (335)
Q Consensus 224 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 301 (335)
+...... .....+..+.+++++.+++... ++.+.+||..+++.+..+. +...+.+++|+|||++|++++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~ 311 (346)
T d1jmxb_ 240 GKTHTQEFADLTELYFTGLRSPKDPNQIYGV-------LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGT 311 (346)
T ss_dssp CCEEEEEEEECSSCEEEEEECSSCTTEEEEE-------ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESB
T ss_pred CceEEEEeecccceeEEEEEeCCCCEEEEec-------CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeC
Confidence 7765543 3455788889999998887652 5789999999999888775 3456899999999999999999
Q ss_pred CCcEEEEecCCCCCCCCccc
Q 019847 302 DETIRFWEAFGPSGDEDSVS 321 (335)
Q Consensus 302 dg~v~iw~~~~~~~~~~~~~ 321 (335)
||.|++||..+.+.......
T Consensus 312 d~~v~v~D~~t~~~i~~i~~ 331 (346)
T d1jmxb_ 312 FNDLAVFNPDTLEKVKNIKL 331 (346)
T ss_dssp SSEEEEEETTTTEEEEEEEC
T ss_pred CCcEEEEECccCCEEEEEEC
Confidence 99999999998776654443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=2.3e-23 Score=169.77 Aligned_cols=278 Identities=12% Similarity=0.164 Sum_probs=194.6
Q ss_pred eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCceeEeee---ccccccee
Q 019847 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETSKLVRNL---EGHHRRVA 104 (335)
Q Consensus 29 ~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~---~~~~~~v~ 104 (335)
+++.+.+++|++|+++.......++...|...+..++|+|||++|++++ .|+.|++|++........+ ..+...+.
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~ 86 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT 86 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce
Confidence 3455589999999998655444444446778899999999999996665 5899999999765433222 22445678
Q ss_pred EeeecCCCCCEEEEeeC-CCcEEEEecccCCee-eEEeecCCCCEEEEEeecCCCEEEEEeC-CCeEEEEEccCCCcccc
Q 019847 105 TSSWNHWNGHILTSGSK-DKSIINHDVRVSNNV-TSCIKAHSGEVCGLKWSNEGNLLASGGD-DNVVRIWERSKMSSSKS 181 (335)
Q Consensus 105 ~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~ 181 (335)
.++|+| ++++|++++. ++.+.+|+....... ......+...+.++.++|+++++++++. +..|.+|+.........
T Consensus 87 ~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (333)
T d1ri6a_ 87 HISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165 (333)
T ss_dssp EEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred EEEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence 899999 8988888875 678999988755432 2233456677889999999998888774 45799999775432221
Q ss_pred ee---eccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc----eEEEee-------cCCcEeEEEeCCCCce
Q 019847 182 LH---RFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT----CIHGID-------AKAQICGLEWNRHHKE 247 (335)
Q Consensus 182 ~~---~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~-------~~~~~~~~~~~~~~~~ 247 (335)
.. ...........++|++++..++.+.. ..+...+++..... ...... .......+.+++++++
T Consensus 166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 243 (333)
T d1ri6a_ 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE--LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 243 (333)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeceeeeeecCCCccEEEEeccceeEEeecc--ccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCc
Confidence 11 11223455688999999988777765 67788888865432 111221 1234677889999998
Q ss_pred eeeeeeeeeecCCCeEEEEECCCCceeeccc---CCCCceeEeEEcCCCCEEEEEeC-CCcEEEEecCCCC
Q 019847 248 ILSGHGFSASGDGNKLCLWKYPNMTKVGELQ---SSNSRILDLSQSPDGLTVATAGA-DETIRFWEAFGPS 314 (335)
Q Consensus 248 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~ 314 (335)
++.. ...++.+.+|++.......... .....+.+++|+|||++|++++. ++.|++|+++...
T Consensus 244 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~t 309 (333)
T d1ri6a_ 244 LYAC-----DRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ 309 (333)
T ss_dssp EEEE-----ETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred eeee-----cccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCC
Confidence 7654 3668899999887654433322 33456788999999999887754 6889999776543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=2.4e-24 Score=181.82 Aligned_cols=246 Identities=14% Similarity=0.096 Sum_probs=180.7
Q ss_pred EcCCC--CEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE----E
Q 019847 66 WSHDA--KTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS----C 139 (335)
Q Consensus 66 ~~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~----~ 139 (335)
++++. -++++.+.||+|++||+.+++.+..+..+ ..+..++|+| +++++++++.|+++++||+.+.+.... .
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~ 103 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI 103 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECC-CCCEEEEEeCCCCEEEEEccCCceeEEEEEeC
Confidence 44443 35577778999999999999999999876 4689999999 999999999999999999987764321 1
Q ss_pred eecCCCCEEEEEeecCCCEEEEE-eCCCeEEEEEccCCCcccceeeccC-----------CCCCeeEEEecCCCCcEEEE
Q 019847 140 IKAHSGEVCGLKWSNEGNLLASG-GDDNVVRIWERSKMSSSKSLHRFTD-----------HCGGVKALAWSPHQVNVLAT 207 (335)
Q Consensus 140 ~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~ 207 (335)
..+|...+.+++|+|||++++++ ..++.+++||...... ...... +......+..++++..++.+
T Consensus 104 ~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~ 180 (426)
T d1hzua2 104 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP---KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 180 (426)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE---EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce---eEEeeccCCCccceeecCCCceeEEEECCCCCEEEEe
Confidence 22455566777888999987554 5789999999776433 322222 33445567777777766666
Q ss_pred ecCCCCCeEEEEECCCCce--EEEeecCCcEeEEEeCCCCceeeeeee--------------------------------
Q 019847 208 GGGREDGCIKIWNVQKGTC--IHGIDAKAQICGLEWNRHHKEILSGHG-------------------------------- 253 (335)
Q Consensus 208 ~~g~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 253 (335)
.. ..+.+.+++...... +..+.....+..+.++|++++++++..
T Consensus 181 ~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (426)
T d1hzua2 181 VK--ETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN 258 (426)
T ss_dssp ET--TTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEE
T ss_pred cC--CCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceee
Confidence 54 567777777766543 344556677889999999998876521
Q ss_pred ----------eeeecCCCeEEEEECCC-------CceeecccCCCCceeEeEEcCCCCEEEE-------EeCCCcEEEEe
Q 019847 254 ----------FSASGDGNKLCLWKYPN-------MTKVGELQSSNSRILDLSQSPDGLTVAT-------AGADETIRFWE 309 (335)
Q Consensus 254 ----------~~~~~~~~~i~i~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~-------~~~dg~v~iw~ 309 (335)
......++.+.+|+... ++....+.+|...+..++|+||+++|++ ++.|++|++||
T Consensus 259 ~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd 338 (426)
T d1hzua2 259 FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 338 (426)
T ss_dssp EEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEE
T ss_pred eecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEE
Confidence 11233467777777544 3566677889999999999999999994 55688999999
Q ss_pred cCCCCCCCC
Q 019847 310 AFGPSGDED 318 (335)
Q Consensus 310 ~~~~~~~~~ 318 (335)
+.+.+...+
T Consensus 339 ~~t~~~~~~ 347 (426)
T d1hzua2 339 LKNLDAKYQ 347 (426)
T ss_dssp TTCTTSCCE
T ss_pred CCCCCcCeE
Confidence 998776543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.92 E-value=1.9e-21 Score=155.89 Aligned_cols=246 Identities=11% Similarity=0.095 Sum_probs=187.1
Q ss_pred cceeeeecCC-c-eEEE-ecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEE-ECCCcEEEEeCCCceeE
Q 019847 18 YSKVIDWGRN-N-VLAV-ALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVG-YMDSKLQLWDAETSKLV 93 (335)
Q Consensus 18 ~~~~~~~~~~-~-~~~~-~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~ 93 (335)
.+..++++++ + ++++ ..++.|++||+.+++....+. .+. .+..++|++++++++++ ..++.+.+|+..+++..
T Consensus 33 ~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (301)
T d1l0qa2 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP--AGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA 109 (301)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--CSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee--ccc-cccccccccccccccccccccceeeecccccceee
Confidence 3456888874 3 4444 468899999999998765443 443 46899999999877655 46778999999999988
Q ss_pred eeecccccceeEeeecCCCCCEE-EEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC-CeEEEE
Q 019847 94 RNLEGHHRRVATSSWNHWNGHIL-TSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD-NVVRIW 171 (335)
Q Consensus 94 ~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iw 171 (335)
..+.. .....++.|+| ++..+ +++..++.+.+|+..+... ...+. +...+..++++|+++.+++++.+ +.+.+|
T Consensus 110 ~~~~~-~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (301)
T d1l0qa2 110 GTVKT-GKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAV-INTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVI 185 (301)
T ss_dssp EEEEC-SSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred eeccc-cccceEEEeec-CCCeeeeeeccccceeeeeccccce-eeecc-cCCCceEEEeeccccceeeecccccccccc
Confidence 88874 45678899999 66555 5666788899999986654 33333 45568899999999988888765 566677
Q ss_pred EccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeee
Q 019847 172 ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSG 251 (335)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (335)
+.... ....... ....+..+++++++..+++++.+..++.|++||+.+++.+..+..+..+..++|+|+|+++++.
T Consensus 186 ~~~~~---~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va 261 (301)
T d1l0qa2 186 DTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVA 261 (301)
T ss_dssp ETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEE
T ss_pred cccce---eeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEE
Confidence 75542 2233332 3455788999999998877765446689999999999999999888889999999999987533
Q ss_pred eeeeeecCCCeEEEEECCCCceeecccC
Q 019847 252 HGFSASGDGNKLCLWKYPNMTKVGELQS 279 (335)
Q Consensus 252 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 279 (335)
++.++.|++||+.+++.+.++..
T Consensus 262 -----~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 262 -----LSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp -----ETTTTEEEEEETTTTEEEEEEEC
T ss_pred -----ECCCCeEEEEECCCCeEEEEEeC
Confidence 26799999999999999888753
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=3.3e-22 Score=168.49 Aligned_cols=196 Identities=14% Similarity=0.020 Sum_probs=146.6
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee-EE---eec
Q 019847 67 SHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT-SC---IKA 142 (335)
Q Consensus 67 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~---~~~ 142 (335)
+++.-++++.+.+|+|.|||.++++.+..+..+ ..+..++|+| +++++++++.|+.+++||+.+.+... .. ...
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~ 106 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE 106 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCC
Confidence 333334588889999999999999999999876 4699999999 99999999999999999998765422 11 223
Q ss_pred CCCCEEEEEeecCCCEE-EEEeCCCeEEEEEccCCCcccceee--------ccCCCCCeeEEEecCCCCcEEEEecCCCC
Q 019847 143 HSGEVCGLKWSNEGNLL-ASGGDDNVVRIWERSKMSSSKSLHR--------FTDHCGGVKALAWSPHQVNVLATGGGRED 213 (335)
Q Consensus 143 ~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 213 (335)
|.+.+.+..|+|||++| ++++.++.|++||..+.+....+.. ...+......+.++|++..++++.. .+
T Consensus 107 ~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~--~~ 184 (432)
T d1qksa2 107 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK--ET 184 (432)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET--TT
T ss_pred CCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc--cC
Confidence 55556667788899976 6788899999999876543222110 1123455678899999998888876 78
Q ss_pred CeEEEEECCCCceE--EEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC
Q 019847 214 GCIKIWNVQKGTCI--HGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM 271 (335)
Q Consensus 214 ~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~ 271 (335)
+.|.+||..+.+.. ..+.....+..++++|+|++++++. ..++.+.++|..++
T Consensus 185 ~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~-----~~~~~v~v~d~~~~ 239 (432)
T d1qksa2 185 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAA-----NARNKLVVIDTKEG 239 (432)
T ss_dssp TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEE-----GGGTEEEEEETTTT
T ss_pred CeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEec-----cccceEEEeecccc
Confidence 99999999887754 4556667789999999999887763 33455555555443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.90 E-value=5.4e-20 Score=152.11 Aligned_cols=300 Identities=9% Similarity=-0.045 Sum_probs=200.2
Q ss_pred ccccceeeeecCC--ceEEEe-----cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE----------
Q 019847 15 EDYYSKVIDWGRN--NVLAVA-----LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY---------- 77 (335)
Q Consensus 15 ~~~~~~~~~~~~~--~~~~~~-----~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------- 77 (335)
.+..+..++++++ ++++.. ..+.|.+||.++++....+ ..+.. ..++|+|||++|++++
T Consensus 19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~--~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV--NGGFL--PNPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEE--eCCCC--ccEEEcCCCCEEEEEeecCCcccccc
Confidence 4455666777774 344331 3467999999999876644 34433 3799999999999875
Q ss_pred CCCcEEEEeCCCceeEeeecccccce-------eEeeecCCCCCEEEEee--CCCcEEEEecccCCeeeEEeecCCCCEE
Q 019847 78 MDSKLQLWDAETSKLVRNLEGHHRRV-------ATSSWNHWNGHILTSGS--KDKSIINHDVRVSNNVTSCIKAHSGEVC 148 (335)
Q Consensus 78 ~dg~i~iw~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~i~ 148 (335)
.++.|.+||..+++.+..+..+.... ..+.|++ +++.++... .++.+.+|+....+. . .+.....
T Consensus 95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~-~----~~~~~~~ 168 (373)
T d2madh_ 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVVQGGSSD-D----QLLSSPT 168 (373)
T ss_pred cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEe-CCCcEEEEEEcCCCceEEeeccCCeE-E----EEeccce
Confidence 35789999999999988877655443 4467777 666554443 456778888764432 1 2334467
Q ss_pred EEEeecCCCE-EEEEeCCCeEEEEEccCCCcccceeec---cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC
Q 019847 149 GLKWSNEGNL-LASGGDDNVVRIWERSKMSSSKSLHRF---TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224 (335)
Q Consensus 149 ~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 224 (335)
++.++|+++. +++.+.|+.+.+|+............. .........+.+.+++. ++... .++.+.+|+..++
T Consensus 169 ~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~v~~~~~~~~ 244 (373)
T d2madh_ 169 CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPV---YSGKILQADISAA 244 (373)
T ss_pred eEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEec---CCceEEEEEcCCC
Confidence 8889998765 467888999999998764332222111 11122234455666553 34333 6899999998877
Q ss_pred ceEEEeec-------------CCcEeEEEeCCCCceeeee----eeeeeecCCCeEEEEECCCCceeecccCCCCceeEe
Q 019847 225 TCIHGIDA-------------KAQICGLEWNRHHKEILSG----HGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDL 287 (335)
Q Consensus 225 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~ 287 (335)
........ ......+.+++++..++.. ..+.....++.+.+||..+++.+..+. +...+..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~ 323 (373)
T d2madh_ 245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAI 323 (373)
T ss_pred eEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEE
Confidence 54322211 1234456777777766542 123344667899999999999988775 45568999
Q ss_pred EEcCCCCE--EEEEeCCCcEEEEecCCCCCCCCccccccccccc
Q 019847 288 SQSPDGLT--VATAGADETIRFWEAFGPSGDEDSVSHLAGLVSL 329 (335)
Q Consensus 288 ~~~~~~~~--l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~ 329 (335)
+|+|||+. +++++.|+.|++||+.+++.......+......+
T Consensus 324 a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l 367 (373)
T d2madh_ 324 SVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVL 367 (373)
T ss_pred EECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEE
Confidence 99999984 4688999999999999998776665554443333
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=2.9e-20 Score=151.21 Aligned_cols=245 Identities=13% Similarity=0.106 Sum_probs=176.0
Q ss_pred cceeeeecCC-c-eEEE-ecCCeEEEEEecCCceeeEEeecC---CCCCceEEEEcCCCCEEEEEE------------CC
Q 019847 18 YSKVIDWGRN-N-VLAV-ALGPVLFLWKWENGKVKKLLQVPG---EDDYPTSVSWSHDAKTLAVGY------------MD 79 (335)
Q Consensus 18 ~~~~~~~~~~-~-~~~~-~~~~~i~vw~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~------------~d 79 (335)
.+..++++++ + ++++ +.++.|.+||+.+++......... +...+..++|+|++++++++. .+
T Consensus 35 ~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T d1pbyb_ 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccc
Confidence 3556888875 3 4344 468999999999999876555421 234567899999999998875 36
Q ss_pred CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec-----
Q 019847 80 SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN----- 154 (335)
Q Consensus 80 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~----- 154 (335)
+.+.+||..+++....+. +...+..+.|+| +++++++++. .+.+||..+.... .....+... ....++|
T Consensus 115 ~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~ 188 (337)
T d1pbyb_ 115 TRVALYDAETLSRRKAFE-APRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLV-EDKPIQSWE-AETYAQPDVLAV 188 (337)
T ss_dssp CEEEEEETTTTEEEEEEE-CCSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEE-EEECSTTTT-TTTBCCCBCCCC
T ss_pred cceeeccccCCeEEEecc-ccCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEE-EEeecCCcc-ccceecCCccee
Confidence 789999999999888877 456788999999 8999988864 4778998765532 222221110 0111111
Q ss_pred -------------------CCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCe
Q 019847 155 -------------------EGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGC 215 (335)
Q Consensus 155 -------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~ 215 (335)
+......+..++.+.+||...... ....+..+...+..+.++|++..++. .++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 261 (337)
T d1pbyb_ 189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM--AMREVRIMDVFYFSTAVNPAKTRAFG-----AYNV 261 (337)
T ss_dssp CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE--EEEEEEECSSCEEEEEECTTSSEEEE-----EESE
T ss_pred eccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcE--EEEEecCCCcceEEEEecccceEEEE-----cccc
Confidence 111122223345688888776432 22334456777888999999865544 3689
Q ss_pred EEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC
Q 019847 216 IKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN 281 (335)
Q Consensus 216 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 281 (335)
|++||+++++.+..+.....+.+++|+|+|++++++ +.++.|++||..+++.+.+++...
T Consensus 262 i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~------~~~~~i~v~D~~t~~~v~~i~~~g 321 (337)
T d1pbyb_ 262 LESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG------GALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE------SBSSEEEEEETTTCCEEEEEECGG
T ss_pred EEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEE------eCCCcEEEEECCCCcEEEEEECCC
Confidence 999999999999999988889999999999999887 679999999999999998876543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.86 E-value=2.2e-20 Score=152.45 Aligned_cols=259 Identities=7% Similarity=-0.039 Sum_probs=184.2
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec-ccccceeEeeecCCCCCEE-EEeeCCCcEEEEecccCCeeeEEee
Q 019847 64 VSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE-GHHRRVATSSWNHWNGHIL-TSGSKDKSIINHDVRVSNNVTSCIK 141 (335)
Q Consensus 64 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~ 141 (335)
++|++++++|++++.+++|.+||+.+++.+..++ .+...+.+++|+| +++++ +++..++.|.+||+.+++.......
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECC-CCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence 4789999999999999999999999999999886 4566789999999 88776 5666889999999987765433222
Q ss_pred cCC-----CCEEEEEeecCCCEEEEEe------------CCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcE
Q 019847 142 AHS-----GEVCGLKWSNEGNLLASGG------------DDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNV 204 (335)
Q Consensus 142 ~~~-----~~i~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 204 (335)
... ..+..++|+|||+++++++ .++.+.+||..+......+.... ....+..+.+++++ .+
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~ 158 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDG-SL 158 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTS-CE
T ss_pred cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeee-ccCceEEEEecCCC-EE
Confidence 111 2345789999999988775 46788999987654433333322 23445667777776 45
Q ss_pred EEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeee--------------------eeeecCCCeEE
Q 019847 205 LATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG--------------------FSASGDGNKLC 264 (335)
Q Consensus 205 ~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~i~ 264 (335)
++. ++.+.+|++.+++.+..+..+.....+.++|++..+..... +.....+..+.
T Consensus 159 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (346)
T d1jmxb_ 159 YVA-----GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 233 (346)
T ss_dssp EEE-----SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred EEe-----CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEE
Confidence 553 45689999999999998887777777778887766543210 11223456688
Q ss_pred EEECCCCceeec-ccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCCCccccccccccceec
Q 019847 265 LWKYPNMTKVGE-LQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 265 i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
+||..++..... ...|...+..+.+++++.+++.... +.|.+||....+..... .+...+.++.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~-~~~~~~~~va~s 300 (346)
T d1jmxb_ 234 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAA-NLDHTYYCVAFD 300 (346)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEE-ECSSCCCEEEEC
T ss_pred EEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEE-cCCCCEEEEEEc
Confidence 899888776544 4467778889999999988887664 67999999877544322 223345555443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=3.8e-19 Score=145.84 Aligned_cols=247 Identities=11% Similarity=0.075 Sum_probs=171.6
Q ss_pred CCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE----------CCCcEEEEeCCCceeEeeecccc----
Q 019847 35 GPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY----------MDSKLQLWDAETSKLVRNLEGHH---- 100 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~---- 100 (335)
++.|.+||..+++....+. .+ ....++|+|||++|++.+ .|+.|++||+.+++.+..+..+.
T Consensus 27 ~~~v~v~D~~tg~~~~~~~--~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~ 102 (355)
T d2bbkh_ 27 VTQQFVIDGEAGRVIGMID--GG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 102 (355)
T ss_dssp SEEEEEEETTTTEEEEEEE--EC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred cCeEEEEECCCCcEEEEEE--CC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCccee
Confidence 4579999999998766554 23 334799999999887653 47899999999999888765432
Q ss_pred ---cceeEeeecCCCCCEEEEee--CCCcEEEEecccCCeeeEEeec---------------------------------
Q 019847 101 ---RRVATSSWNHWNGHILTSGS--KDKSIINHDVRVSNNVTSCIKA--------------------------------- 142 (335)
Q Consensus 101 ---~~v~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~--------------------------------- 142 (335)
.....+.|+| +++.++.+. .+..+.+|+..+.+.... +..
T Consensus 103 ~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~ 180 (355)
T d2bbkh_ 103 LVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRM-LDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT 180 (355)
T ss_dssp CBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEE-EECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred ecCCCCceEEEec-CCCeeEEecCCCCceeeeeecCCCcEeeE-EecCCcceEeecCCcceEEEcCCCCEEEEEecCCCe
Confidence 2345678999 888777664 456788898875542211 110
Q ss_pred ------------CCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCC----------CCCeeEEEecCC
Q 019847 143 ------------HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDH----------CGGVKALAWSPH 200 (335)
Q Consensus 143 ------------~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~ 200 (335)
+...+....+.+++..++.++.++.+++|++..... ..+.....+ ......++++++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d 259 (355)
T d2bbkh_ 181 PEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTEAERADGWRPGGWQQVAYHRA 259 (355)
T ss_dssp CEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCHHHHHTTEEECSSSCEEEETT
T ss_pred EEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE-EEEeccCCcccceEeeeeeccceEEEEEeCC
Confidence 111122345566677788888999999999876432 111111111 123455889999
Q ss_pred CCcEEEEecC-------CCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 201 QVNVLATGGG-------REDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 201 ~~~~~~~~~g-------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
+..+++.... .....|.+||..+++.+..+..+..+.+++|+|+|+.++.. +++.++.|++||..+++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v----~~~~d~~i~v~D~~tg~~ 335 (355)
T d2bbkh_ 260 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYA----LSTGDKTLYIHDAESGEE 335 (355)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEE----EETTTTEEEEEETTTCCE
T ss_pred CCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEE----EECCCCEEEEEECCCCCE
Confidence 9877765430 01257999999999999999888889999999999854321 236789999999999999
Q ss_pred eecccCCCCceeEeEEcCC
Q 019847 274 VGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~~ 292 (335)
+.++..+......+.+.++
T Consensus 336 ~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 336 LRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp EEEECCCCSSCCEEECCCC
T ss_pred EEEEeCcCCCccEEEeCCC
Confidence 9999877665566665544
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.81 E-value=1.9e-18 Score=141.62 Aligned_cols=252 Identities=11% Similarity=0.051 Sum_probs=166.9
Q ss_pred ceEEEEcCCCCEEEEEE-----CCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEe----------eCCCcE
Q 019847 61 PTSVSWSHDAKTLAVGY-----MDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSG----------SKDKSI 125 (335)
Q Consensus 61 v~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~dg~i 125 (335)
+.-.+.+||++.+++.. .++.|.+||..+++.+..+..+.. ..++|+| +++.|++. ..++.|
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~Sp-Dg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVAD-DGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECT-TSSCEEEEEEEEEETTEEEEEEEE
T ss_pred cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcC-CCCEEEEEeCCCccccccCCCCEE
Confidence 33346689999987764 355799999999999998875543 4799999 88877764 347899
Q ss_pred EEEecccCCeeeEEeecCC-------CCEEEEEeecCCCEEEEEe--CCCeEEEEEccCCCcccceeec-----------
Q 019847 126 INHDVRVSNNVTSCIKAHS-------GEVCGLKWSNEGNLLASGG--DDNVVRIWERSKMSSSKSLHRF----------- 185 (335)
Q Consensus 126 ~~~d~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~----------- 185 (335)
++||..+.+.... ...+. .....++|+|+++++++++ .+..+.+|+.........+...
T Consensus 81 ~v~D~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T d2bbkh_ 81 EVFDPVTLLPTAD-IELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPD 159 (355)
T ss_dssp EEECTTTCCEEEE-EEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETT
T ss_pred EEEECCCCCEEEE-EecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCc
Confidence 9999997765433 22222 2234678999999888775 4567899987654321111100
Q ss_pred -------------------------------cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEE--eec
Q 019847 186 -------------------------------TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHG--IDA 232 (335)
Q Consensus 186 -------------------------------~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~--~~~ 232 (335)
..+...+....+.+++..++.+. .++.+++|++..++.... ...
T Consensus 160 ~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~ 236 (355)
T d2bbkh_ 160 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPT---YTGKIHQIDLSSGDAKFLPAVEA 236 (355)
T ss_dssp EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEB---TTSEEEEEECTTSSCEECCCEES
T ss_pred ceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEec---CCCeEEEEecCCCcEEEEeccCC
Confidence 00111122334455554444433 689999999887754321 111
Q ss_pred -----------CCcEeEEEeCCCCceeeeeeee----eeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCC--E
Q 019847 233 -----------KAQICGLEWNRHHKEILSGHGF----SASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGL--T 295 (335)
Q Consensus 233 -----------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~ 295 (335)
......+++++++..++..... ......+.|.+||..+++.+..+.. ...+.+++|+|||+ +
T Consensus 237 ~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l 315 (355)
T d2bbkh_ 237 LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLL 315 (355)
T ss_dssp SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEE
T ss_pred cccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEE
Confidence 1123457888998887654221 1112346899999999999887764 34588999999997 4
Q ss_pred EEEEeCCCcEEEEecCCCCCCCCcc
Q 019847 296 VATAGADETIRFWEAFGPSGDEDSV 320 (335)
Q Consensus 296 l~~~~~dg~v~iw~~~~~~~~~~~~ 320 (335)
+++++.|+.|++||..+++......
T Consensus 316 ~v~~~~d~~i~v~D~~tg~~~~~i~ 340 (355)
T d2bbkh_ 316 YALSTGDKTLYIHDAESGEELRSVN 340 (355)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EEEECCCCEEEEEECCCCCEEEEEe
Confidence 5677789999999999987655443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=4.6e-17 Score=131.92 Aligned_cols=238 Identities=10% Similarity=0.112 Sum_probs=165.9
Q ss_pred EEEEECCCcEEEEeCCCceeEeee--cccccceeEeeecCCCCCEEEEee-CCCcEEEEecccCCeeeE--EeecCCCCE
Q 019847 73 LAVGYMDSKLQLWDAETSKLVRNL--EGHHRRVATSSWNHWNGHILTSGS-KDKSIINHDVRVSNNVTS--CIKAHSGEV 147 (335)
Q Consensus 73 l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~--~~~~~~~~i 147 (335)
+++++.|++|++|++++...+..+ ..+.+.+..++|+| ++++|++++ .|+.|++|++........ ....+...+
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 466778999999999765333322 35778999999999 888885554 589999999986543322 222345567
Q ss_pred EEEEeecCCCEEEEEeC-CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce
Q 019847 148 CGLKWSNEGNLLASGGD-DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC 226 (335)
Q Consensus 148 ~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 226 (335)
..++|+|||++|++++. ++.+.+|+....... .......+...+.++.++|++..++.... .+..+.+|+......
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~v~~s~d~~~~~~~~~--~~~~i~~~~~~~~~~ 162 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV-GVVDVVEGLDGCHSANISPDNRTLWVPAL--KQDRICLFTVSDDGH 162 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEE-EEEEEECCCTTBCCCEECTTSSEEEEEEG--GGTEEEEEEECTTSC
T ss_pred eEEEEcCCCCEEeecccCCCceeeeccccccce-ecccccCCCccceEEEeeecceeeecccc--ccceeeEEEeccCCc
Confidence 78999999999999875 678999987754332 23333456677889999999988888775 678899999876543
Q ss_pred EEEe-------ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee----ecc------cCCCCceeEeEE
Q 019847 227 IHGI-------DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV----GEL------QSSNSRILDLSQ 289 (335)
Q Consensus 227 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~----~~~------~~~~~~i~~~~~ 289 (335)
.... ........++|++++..++... ...+...+++....... ... .........+++
T Consensus 163 ~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (333)
T d1ri6a_ 163 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN-----ELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI 237 (333)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE-----TTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred ceeeeceeeeeecCCCccEEEEeccceeEEeec-----cccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEE
Confidence 3221 1234567899999998876542 45677888876543211 111 112334677889
Q ss_pred cCCCCEEEEE-eCCCcEEEEecCCCCCCCCc
Q 019847 290 SPDGLTVATA-GADETIRFWEAFGPSGDEDS 319 (335)
Q Consensus 290 ~~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~ 319 (335)
++++++++.. ..++.+.+|++.........
T Consensus 238 s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (333)
T d1ri6a_ 238 TPDGRHLYACDRTASLITVFSVSEDGSVLSK 268 (333)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred ecccCceeeecccCCeEEEEEEcCCCCEEEE
Confidence 9999877655 56788999999876655443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.79 E-value=4.1e-16 Score=128.48 Aligned_cols=262 Identities=8% Similarity=-0.080 Sum_probs=176.1
Q ss_pred eeeecCC--ceEEEe----------cCCeEEEEEecCCceeeEEeecCCC-----CCceEEEEcCCCCEEEEEE--CCCc
Q 019847 21 VIDWGRN--NVLAVA----------LGPVLFLWKWENGKVKKLLQVPGED-----DYPTSVSWSHDAKTLAVGY--MDSK 81 (335)
Q Consensus 21 ~~~~~~~--~~~~~~----------~~~~i~vw~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~dg~ 81 (335)
.+.|+++ .++++. .++.|.+||..+++........... .....+.|+++++.++... .++.
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~ 149 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence 4778874 344433 3578999999999876655433211 1235678999999776654 4568
Q ss_pred EEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee-----cCCCCEEEEEeecCC
Q 019847 82 LQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK-----AHSGEVCGLKWSNEG 156 (335)
Q Consensus 82 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-----~~~~~i~~~~~~~~~ 156 (335)
+.+|+..+.+..... ....++.++|.....+++.+.|+.+.+|+............ ........+.+.+++
T Consensus 150 ~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (373)
T d2madh_ 150 VGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG 225 (373)
T ss_pred eEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc
Confidence 899998877665444 34567889984455678899999999999886554322211 111223445555555
Q ss_pred CEEEEEeCCCeEEEEEccCCCcccceeeccC----------CCCCeeEEEecCCCCcEEEEec-------CCCCCeEEEE
Q 019847 157 NLLASGGDDNVVRIWERSKMSSSKSLHRFTD----------HCGGVKALAWSPHQVNVLATGG-------GREDGCIKIW 219 (335)
Q Consensus 157 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~-------g~~d~~i~i~ 219 (335)
. ++..+.++.+.+|+...... ........ .......+.++|++..++.... ...++.+.+|
T Consensus 226 ~-~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~ 303 (373)
T d2madh_ 226 R-IVWPVYSGKILQADISAAGA-TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred e-EEEecCCceEEEEEcCCCeE-EEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEE
Confidence 4 45556788999999775421 11111111 1223344566666655443221 1156789999
Q ss_pred ECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCC
Q 019847 220 NVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
|..+++.+..+.....+..++|+|+|+.++. ++++.++.|++||+.+++.+.++..+....+.+++.++
T Consensus 304 d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~----vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 304 TGLVGQTSSQISLGHDVDAISVAQDGGPDLY----ALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred ECCCCcEEEEecCCCCeeEEEECCCCCEEEE----EEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 9999999999998889999999999986532 12377999999999999999999988777788877654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.78 E-value=2.1e-16 Score=134.53 Aligned_cols=142 Identities=15% Similarity=0.168 Sum_probs=107.5
Q ss_pred eeeecCCceEEEecCCeEEEEEecCCceeeEE---eecCCCCCceEEEEcCCCCEEEEEEC---------CCcEEEEeCC
Q 019847 21 VIDWGRNNVLAVALGPVLFLWKWENGKVKKLL---QVPGEDDYPTSVSWSHDAKTLAVGYM---------DSKLQLWDAE 88 (335)
Q Consensus 21 ~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~iw~~~ 88 (335)
.+.|.++.-+....++.+.+||+.+++....+ .+..|...|.++.|||||++|+.++. ++.+.+||++
T Consensus 21 ~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~ 100 (470)
T d2bgra1 21 SLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN 100 (470)
T ss_dssp CCEECSSSEEEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred CCEeCCCCEEEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECC
Confidence 46687765455567889999999999875443 23456678999999999999998753 5678999999
Q ss_pred CceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeec-----------------CCCCEEEEE
Q 019847 89 TSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKA-----------------HSGEVCGLK 151 (335)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-----------------~~~~i~~~~ 151 (335)
+++. ..+..+...+..+.|+| +++.++.. .++.+.+|+...+........+ ..+....+.
T Consensus 101 ~~~~-~~l~~~~~~~~~~~~SP-DG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 177 (470)
T d2bgra1 101 KRQL-ITEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW 177 (470)
T ss_dssp TTEE-CCSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred CCcc-cccccCCcccccccccc-CcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence 8874 56777889999999999 99988885 5678999998866543222111 123345688
Q ss_pred eecCCCEEEEEeCC
Q 019847 152 WSNEGNLLASGGDD 165 (335)
Q Consensus 152 ~~~~~~~l~~~~~d 165 (335)
|+|||++|+....|
T Consensus 178 wSPDGk~ia~~~~d 191 (470)
T d2bgra1 178 WSPNGTFLAYAQFN 191 (470)
T ss_dssp ECTTSSEEEEEEEE
T ss_pred ECCCCCccceeEec
Confidence 99999999997654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.76 E-value=6.8e-17 Score=133.09 Aligned_cols=268 Identities=9% Similarity=-0.034 Sum_probs=175.3
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE----------CCCcEEEEeCCCceeEeeeccccc----
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY----------MDSKLQLWDAETSKLVRNLEGHHR---- 101 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~---- 101 (335)
..+.+||..+++....... +.. ..++|+|||++|++.+ .|+.|.+||..+++.+..+..+..
T Consensus 46 ~~~~~~d~~~~~~~~~~~~--~~~--~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~ 121 (368)
T d1mdah_ 46 TENWVSCAGCGVTLGHSLG--AFL--SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEEETTTTEEEEEEEE--CTT--CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred ceEEEEeCCCCcEEEEEeC--CCC--CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceec
Confidence 4577779888887665543 333 3689999999998865 367799999999998887754322
Q ss_pred ---ceeEeeecCCCCCEEEEee-CCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCC
Q 019847 102 ---RVATSSWNHWNGHILTSGS-KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMS 177 (335)
Q Consensus 102 ---~v~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 177 (335)
....++|+| ++++++++. .++.+.+||+.+.+. ......+..... +......++..+.||.+..+++....
T Consensus 122 ~g~~p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~ 196 (368)
T d1mdah_ 122 VGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp BSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSC
T ss_pred ccCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcE-eEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCc
Confidence 345689999 888877765 579999999986654 333333332211 11234466667778888888876543
Q ss_pred cccce---eeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-------------CCcEeEEEe
Q 019847 178 SSKSL---HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-------------KAQICGLEW 241 (335)
Q Consensus 178 ~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-------------~~~~~~~~~ 241 (335)
..... .....+...+....+.+++. .+.. ..+.+++++...+........ ......+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~ 271 (368)
T d1mdah_ 197 AAAGIVGAQCTGAQNCSSQAAQANYPGM-LVWA----VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK 271 (368)
T ss_dssp CCCEECCCCSCTTSCBCSCCEEETTTTE-EEEC----BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred eeeeeeecccccccccceeecccccCcE-EEEe----cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEE
Confidence 22111 12223344455677888774 3332 457778888766554432211 012345778
Q ss_pred CCCCceeeeeee---eeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCC--EEEEEeCCCcEEEEecCCCCCC
Q 019847 242 NRHHKEILSGHG---FSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGL--TVATAGADETIRFWEAFGPSGD 316 (335)
Q Consensus 242 ~~~~~~~~~~~~---~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~v~iw~~~~~~~~ 316 (335)
++++..++.... .........|.+||..+++.+..+.. ...+.+++|+|||+ +++++..|+.|++||..+++..
T Consensus 272 ~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~ 350 (368)
T d1mdah_ 272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred cCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence 888887755321 11112235699999999999888764 35688999999997 3466778999999999988765
Q ss_pred CC
Q 019847 317 ED 318 (335)
Q Consensus 317 ~~ 318 (335)
..
T Consensus 351 ~~ 352 (368)
T d1mdah_ 351 SS 352 (368)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.70 E-value=1.5e-15 Score=124.91 Aligned_cols=243 Identities=7% Similarity=-0.075 Sum_probs=161.7
Q ss_pred CCeEEEEEecCCceeeEEeecCC-----CCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCceeEeeecccccceeEeee
Q 019847 35 GPVLFLWKWENGKVKKLLQVPGE-----DDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETSKLVRNLEGHHRRVATSSW 108 (335)
Q Consensus 35 ~~~i~vw~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 108 (335)
++.|.+||..+++.......+.+ ......++|+|||++|+++. .++.+.+||+.+++....+..+.... .
T Consensus 95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~ 170 (368)
T d1mdah_ 95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----I 170 (368)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----C
T ss_pred CCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce----E
Confidence 56799999999988776665432 22345799999999998876 57999999999999988876543322 2
Q ss_pred cCCCCCEEEEeeCCCcEEEEecccCCeeeEE-----eecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCccccee
Q 019847 109 NHWNGHILTSGSKDKSIINHDVRVSNNVTSC-----IKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLH 183 (335)
Q Consensus 109 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 183 (335)
.+.....++..+.||.+.++++......... ...+...+....+.+++..+.+. ++.+++++...... ..+.
T Consensus 171 ~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~-~~~~ 247 (368)
T d1mdah_ 171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGA-TMKA 247 (368)
T ss_dssp EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCC-EEEC
T ss_pred ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCce-EEEe
Confidence 2325567777888999888888755432221 12233344456666676555433 45566666543221 1111
Q ss_pred eccC----------CCCCeeEEEecCCCCcEEEEecC------CCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCce
Q 019847 184 RFTD----------HCGGVKALAWSPHQVNVLATGGG------REDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKE 247 (335)
Q Consensus 184 ~~~~----------~~~~v~~~~~~~~~~~~~~~~~g------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (335)
.... .......++++|++..+++.... .....|.+||..+++.+..+.....+..++|+|+|+.
T Consensus 248 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~ 327 (368)
T d1mdah_ 248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGAS 327 (368)
T ss_dssp CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSC
T ss_pred ecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCE
Confidence 1111 11223457889998877665420 0124699999999999999888888999999999985
Q ss_pred eeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEE
Q 019847 248 ILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQ 289 (335)
Q Consensus 248 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 289 (335)
++. +++..++.|++||..+++.+.++..... .+.|++
T Consensus 328 ~ly----~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~ 364 (368)
T d1mdah_ 328 DNY----ANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV 364 (368)
T ss_dssp EEE----EEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred EEE----EEeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence 431 1236789999999999999998875443 344544
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.69 E-value=3.6e-15 Score=122.47 Aligned_cols=256 Identities=11% Similarity=0.019 Sum_probs=166.7
Q ss_pred EEEecCCeEEEEEecCCceeeEEeec----------------------------CCCCCceEEEEcCCCCEEEEEE-CCC
Q 019847 30 LAVALGPVLFLWKWENGKVKKLLQVP----------------------------GEDDYPTSVSWSHDAKTLAVGY-MDS 80 (335)
Q Consensus 30 ~~~~~~~~i~vw~~~~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~~~~l~~~~-~dg 80 (335)
++++.+|.|++|++.+++..+.+..- .|.........+|||++|++.. .++
T Consensus 15 ~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~ 94 (441)
T d1qnia2 15 WSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANT 94 (441)
T ss_dssp EECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTT
T ss_pred EeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCC
Confidence 34457899999999998876654321 0222233444578999997765 678
Q ss_pred cEEEEeCCCceeEeeec-ccccceeEeeecCCCCC--EEEEeeCCC-----------------cEEEEecccCCeeeEEe
Q 019847 81 KLQLWDAETSKLVRNLE-GHHRRVATSSWNHWNGH--ILTSGSKDK-----------------SIINHDVRVSNNVTSCI 140 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~--~l~~~~~dg-----------------~i~~~d~~~~~~~~~~~ 140 (335)
.|.++|+++++..+.+. .+...+..++|+| +++ +++..+.+. .+..+|..+.....+..
T Consensus 95 rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~ 173 (441)
T d1qnia2 95 RVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI 173 (441)
T ss_dssp EEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred EEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence 99999999999887665 3567899999999 666 344333321 23446766555444333
Q ss_pred ecCCCCEEEEEeecCCCEEEEEeCCC-----------------------------------------eEEEEEccCCCcc
Q 019847 141 KAHSGEVCGLKWSNEGNLLASGGDDN-----------------------------------------VVRIWERSKMSSS 179 (335)
Q Consensus 141 ~~~~~~i~~~~~~~~~~~l~~~~~dg-----------------------------------------~i~iwd~~~~~~~ 179 (335)
. .+....+.++|+|+++++.+.+. .+.+++... .
T Consensus 174 v--~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~---~ 248 (441)
T d1qnia2 174 V--DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE---S 248 (441)
T ss_dssp E--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS---C
T ss_pred c--CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC---C
Confidence 2 34567899999999998877542 122222111 1
Q ss_pred cceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce------------EEEeecCCcEeEEEeCCCCce
Q 019847 180 KSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC------------IHGIDAKAQICGLEWNRHHKE 247 (335)
Q Consensus 180 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 247 (335)
..+..+.... ....+.++|||+++++++. .++++.+||+++.+. ....+..-.....+|+++|..
T Consensus 249 ~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~--~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~ 325 (441)
T d1qnia2 249 EFTRYIPVPK-NPHGLNTSPDGKYFIANGK--LSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNA 325 (441)
T ss_dssp SSEEEECCBS-SCCCEEECTTSCEEEEECT--TSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEE
T ss_pred ceEEEEeCCC-CccCceECCCCCEEEEeCC--cCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceE
Confidence 2233333332 3567999999999999876 999999999865321 111111223455689998876
Q ss_pred eeeeeeeeeecCCCeEEEEECCC---------C-ceeecc-----cCCCCceeEeEEcCCCCEEEEEe
Q 019847 248 ILSGHGFSASGDGNKLCLWKYPN---------M-TKVGEL-----QSSNSRILDLSQSPDGLTVATAG 300 (335)
Q Consensus 248 ~~~~~~~~~~~~~~~i~i~d~~~---------~-~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~ 300 (335)
..+. .-|..|..|++.. . ..+..+ .+|...+.+.+++|||++|++++
T Consensus 326 yts~------~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 326 YTTL------FIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp EEEE------TTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred EEcc------cccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence 5554 5699999999741 1 122222 46777778889999999999994
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.63 E-value=3.9e-12 Score=103.81 Aligned_cols=282 Identities=9% Similarity=0.050 Sum_probs=169.3
Q ss_pred eEEEec--CCeEEEEEecC--CceeeEEee-cCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCC-ceeEeee-ccccc
Q 019847 29 VLAVAL--GPVLFLWKWEN--GKVKKLLQV-PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAET-SKLVRNL-EGHHR 101 (335)
Q Consensus 29 ~~~~~~--~~~i~vw~~~~--~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~-~~~~~ 101 (335)
+++++. .+.|+++.++. +++...... ......+..++|+|++++|.++.. +.+..|.+.. +...... .....
T Consensus 5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~ 83 (365)
T d1jofa_ 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG 83 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence 566653 55777766654 443322221 223455678999999999988764 5688887653 2222221 22234
Q ss_pred ceeEeeecCCCCCEEE--Eee-CCCcEEEEecccCC------------ee----eEEeecCCCCEEEEEeecCCCEEEEE
Q 019847 102 RVATSSWNHWNGHILT--SGS-KDKSIINHDVRVSN------------NV----TSCIKAHSGEVCGLKWSNEGNLLASG 162 (335)
Q Consensus 102 ~v~~~~~~~~~~~~l~--~~~-~dg~i~~~d~~~~~------------~~----~~~~~~~~~~i~~~~~~~~~~~l~~~ 162 (335)
....+.+++ +++.++ ++. ..+.+..+.+.... .. ..........+.++.|+|+|++++++
T Consensus 84 ~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~ 162 (365)
T d1jofa_ 84 HPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CcEEEEECC-CCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEe
Confidence 566788888 666432 222 23555554432211 11 11111233457899999999988888
Q ss_pred eC-CCeEEEEEccCCCcccceeec--cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEE--E---eec--
Q 019847 163 GD-DNVVRIWERSKMSSSKSLHRF--TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIH--G---IDA-- 232 (335)
Q Consensus 163 ~~-dg~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~--~---~~~-- 232 (335)
+. ...|.+|+............. .........++|+|+++.++++.. .+++|.+|++..++... . ...
T Consensus 163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e--~~~~V~v~~~~~~~~~~~~~~~~~~~~~ 240 (365)
T d1jofa_ 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME--AGNRICEYVIDPATHMPVYTHHSFPLIP 240 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred eCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEecc--CCCEEEEEEecCCCceEEEEeeeecccc
Confidence 64 347888886543322222221 123456789999999998888876 78999999987654321 1 110
Q ss_pred -------------CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeec------ccCCCCceeEeEEcC-C
Q 019847 233 -------------KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE------LQSSNSRILDLSQSP-D 292 (335)
Q Consensus 233 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~------~~~~~~~i~~~~~~~-~ 292 (335)
......+.++|+|++++++..-........|..|++.....+.. ..........++++| +
T Consensus 241 ~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~ 320 (365)
T d1jofa_ 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred ccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCC
Confidence 11356789999999998764311112234577787765332221 112334467899998 7
Q ss_pred CCEEEEEe-CCCcEEEEecCCCC
Q 019847 293 GLTVATAG-ADETIRFWEAFGPS 314 (335)
Q Consensus 293 ~~~l~~~~-~dg~v~iw~~~~~~ 314 (335)
|++|+++. .++.|.+|+++...
T Consensus 321 G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 321 DEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp TTEEEEECSSSCEEEEEEEETTE
T ss_pred CCEEEEEeCCCCeEEEEEEeCCc
Confidence 89887764 67899999987653
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.55 E-value=2.2e-12 Score=105.85 Aligned_cols=229 Identities=8% Similarity=0.054 Sum_probs=155.1
Q ss_pred EEEEECCCcEEEEeCCCceeEeeecc------------------------------cccceeEeeecCCCCCEEEEe-eC
Q 019847 73 LAVGYMDSKLQLWDAETSKLVRNLEG------------------------------HHRRVATSSWNHWNGHILTSG-SK 121 (335)
Q Consensus 73 l~~~~~dg~i~iw~~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~~l~~~-~~ 121 (335)
+++|+.+|.|++|++.+++.++.+.. |..........| ++++|++. ..
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp-DGr~lfV~d~~ 92 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY-DGKYLFINDKA 92 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE-EEEEEEEEETT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC-CCCEEEEEcCC
Confidence 45677899999999999988776532 122334444567 78877555 57
Q ss_pred CCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCC--EEEEEeCCC-----------------eEEEEEccCCCcccce
Q 019847 122 DKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN--LLASGGDDN-----------------VVRIWERSKMSSSKSL 182 (335)
Q Consensus 122 dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg-----------------~i~iwd~~~~~~~~~~ 182 (335)
++.|.++|+++.+........+...+..++|+|+++ +++..+.+. .+..+|..+... .
T Consensus 93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v---~ 169 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV---A 169 (441)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE---E
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee---e
Confidence 789999999977654433345678899999999988 555444332 123456554322 2
Q ss_pred eeccCCCCCeeEEEecCCCCcEEEEecCC--------------------------------------CCCeEEEEECCCC
Q 019847 183 HRFTDHCGGVKALAWSPHQVNVLATGGGR--------------------------------------EDGCIKIWNVQKG 224 (335)
Q Consensus 183 ~~~~~~~~~v~~~~~~~~~~~~~~~~~g~--------------------------------------~d~~i~i~d~~~~ 224 (335)
..... .+....+.++|+|+++++++.++ .++.+.+++....
T Consensus 170 ~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~ 248 (441)
T d1qnia2 170 WQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGES 248 (441)
T ss_dssp EEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSC
T ss_pred EEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCC
Confidence 22221 23467899999999888776311 1345566666666
Q ss_pred ceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCcee--------ecccCCC---CceeEeEEcCCC
Q 019847 225 TCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKV--------GELQSSN---SRILDLSQSPDG 293 (335)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~--------~~~~~~~---~~i~~~~~~~~~ 293 (335)
+.+..++.+.....+.++|+|++++++ +..++++.+||+.+.... ..+.++. -.....+|+++|
T Consensus 249 ~v~~~IPvgksPhGv~vSPDGkyl~~~-----~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g 323 (441)
T d1qnia2 249 EFTRYIPVPKNPHGLNTSPDGKYFIAN-----GKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRG 323 (441)
T ss_dssp SSEEEECCBSSCCCEEECTTSCEEEEE-----CTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSS
T ss_pred ceEEEEeCCCCccCceECCCCCEEEEe-----CCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCc
Confidence 677777777778899999999998654 367999999998653321 1111111 123456899999
Q ss_pred CEEEEEeCCCcEEEEecC
Q 019847 294 LTVATAGADETIRFWEAF 311 (335)
Q Consensus 294 ~~l~~~~~dg~v~iw~~~ 311 (335)
..+.+..-|..|..|++.
T Consensus 324 ~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 324 NAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp EEEEEETTTTEEEEEEHH
T ss_pred eEEEcccccceEEEeccc
Confidence 888899999999999985
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=1.1e-10 Score=90.92 Aligned_cols=240 Identities=13% Similarity=0.083 Sum_probs=153.1
Q ss_pred eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCC---cEEEEeCCCceeEeeecccccceeEeeecCCCC
Q 019847 37 VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDS---KLQLWDAETSKLVRNLEGHHRRVATSSWNHWNG 113 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 113 (335)
.|.|.|.+......+.. +...+...+|||||++||...... .+.+.+...+... .+..+........|+| ++
T Consensus 20 ~l~i~d~dG~~~~~l~~---~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sp-dg 94 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHR---SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP-DG 94 (269)
T ss_dssp EEEEEETTSCSCEEEEE---ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT-TS
T ss_pred EEEEEcCCCCCcEEEec---CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecC-CC
Confidence 58888887766555543 345688999999999999876433 4777777665544 4445677888899999 77
Q ss_pred CEEEEee-CCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEE-eCCCe--EEEEEccCCCcccceeeccCCC
Q 019847 114 HILTSGS-KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASG-GDDNV--VRIWERSKMSSSKSLHRFTDHC 189 (335)
Q Consensus 114 ~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~--i~iwd~~~~~~~~~~~~~~~~~ 189 (335)
..++... .++...++.......................+++++..++.. ..+|. |...++.... ........
T Consensus 95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~----~~~~~~~~ 170 (269)
T d2hqsa1 95 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA----PQRITWEG 170 (269)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----CEECCCSS
T ss_pred CeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccccc----ceeeeccc
Confidence 7666544 444444444333333233333445555566677766655444 44554 4455544322 22233345
Q ss_pred CCeeEEEecCCCCcEEEEecCCCCC--eEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEE
Q 019847 190 GGVKALAWSPHQVNVLATGGGREDG--CIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWK 267 (335)
Q Consensus 190 ~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 267 (335)
.......|+|++..++.... ..+ .+.+.+...+.. ..+..........|+|+|+.|+.... .+....+++++
T Consensus 171 ~~~~~~~~spdg~~~~~~~~--~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~---~~~~~~l~~~~ 244 (269)
T d2hqsa1 171 SQNQDADVSSDGKFMVMVSS--NGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSS---QGMGSVLNLVS 244 (269)
T ss_dssp SEEEEEEECTTSSEEEEEEE--CSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEE---ETTEEEEEEEE
T ss_pred ccccccccccccceeEEEee--cCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEc---CCCCcEEEEEE
Confidence 66778899999998888775 444 455555555443 34444556677899999999875421 13456789999
Q ss_pred CCCCceeecccCCCCceeEeEEcCC
Q 019847 268 YPNMTKVGELQSSNSRILDLSQSPD 292 (335)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~ 292 (335)
+..+... .+....+.+...+|||-
T Consensus 245 ~dg~~~~-~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 245 TDGRFKA-RLPATDGQVKFPAWSPY 268 (269)
T ss_dssp TTSCCEE-ECCCSSSEEEEEEECCC
T ss_pred CCCCCEE-EEeCCCCcEEeEEeCCC
Confidence 9876654 45556677888999983
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.52 E-value=8.2e-13 Score=111.98 Aligned_cols=141 Identities=17% Similarity=0.162 Sum_probs=105.0
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeec-----ccccceeEeeecCCCCCEEEEeeC---------CCcEEE
Q 019847 62 TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLE-----GHHRRVATSSWNHWNGHILTSGSK---------DKSIIN 127 (335)
Q Consensus 62 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~~ 127 (335)
..+.|.++++++.. .++.+.+||+.+++....+. .+...|.++.|+| +++.|+.++. ++.+.+
T Consensus 20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~l 96 (470)
T d2bgra1 20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDI 96 (470)
T ss_dssp CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC-CCCEEEEEECCcceeeeccCceEEE
Confidence 45789999987764 57889999999998765443 4457899999999 9999888753 567899
Q ss_pred EecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeec------c---------CCCCCe
Q 019847 128 HDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF------T---------DHCGGV 192 (335)
Q Consensus 128 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~---------~~~~~v 192 (335)
||+.+++ ...+..+...+..+.|||||+.+|... ++.+++|+...+...+..... . ...+..
T Consensus 97 ~d~~~~~--~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~ 173 (470)
T d2bgra1 97 YDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (470)
T ss_dssp EETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred EECCCCc--ccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCc
Confidence 9998654 344677889999999999999999965 789999998765432211100 0 022334
Q ss_pred eEEEecCCCCcEEEEe
Q 019847 193 KALAWSPHQVNVLATG 208 (335)
Q Consensus 193 ~~~~~~~~~~~~~~~~ 208 (335)
..+.|+|||+.++...
T Consensus 174 ~~~~wSPDGk~ia~~~ 189 (470)
T d2bgra1 174 SALWWSPNGTFLAYAQ 189 (470)
T ss_dssp BCEEECTTSSEEEEEE
T ss_pred cccEECCCCCccceeE
Confidence 5688999998877765
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.48 E-value=7.5e-10 Score=86.59 Aligned_cols=239 Identities=15% Similarity=0.230 Sum_probs=162.9
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeeccc------ccceeEeeecCCCCCEEEEe-eCCCcEEEEeccc
Q 019847 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGH------HRRVATSSWNHWNGHILTSG-SKDKSIINHDVRV 132 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~-~~dg~i~~~d~~~ 132 (335)
....++++|+++.+++-..++.|++||.+ ++.+..+... ......+.+.+..+..+++. +.++.|..++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence 46899999999988877778899999965 6666665321 12334555555344444443 345567777754
Q ss_pred CCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeec--cCCCCCeeEEEecCCCCcEEEEecC
Q 019847 133 SNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF--TDHCGGVKALAWSPHQVNVLATGGG 210 (335)
Q Consensus 133 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~g 210 (335)
+......-.........+++.++++++++....+.+.+++... +.+..+ ..+......+++.+++. ++++..
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g----~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~- 175 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG----NVLHKFGCSKHLEFPNGVVVNDKQE-IFISDN- 175 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS----CEEEEEECTTTCSSEEEEEECSSSE-EEEEEG-
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC----ceeecccccccccccceeeecccee-EEeeec-
Confidence 3333333233456678899999999888888788888888542 223332 33456678899999884 666655
Q ss_pred CCCCeEEEEECCCCceEEEeecC---CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccC--CCCcee
Q 019847 211 REDGCIKIWNVQKGTCIHGIDAK---AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS--SNSRIL 285 (335)
Q Consensus 211 ~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~ 285 (335)
..+.|++||. +++.+..+... .....++++++|+.+++-. ..+..|.+|+ .+++.+.++.. ......
T Consensus 176 -~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~-----~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~ 247 (279)
T d1q7fa_ 176 -RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADN-----HNNFNLTIFT-QDGQLISALESKVKHAQCF 247 (279)
T ss_dssp -GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC-----SSSCEEEEEC-TTSCEEEEEEESSCCSCEE
T ss_pred -cccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEEC-----CCCcEEEEEC-CCCCEEEEEeCCCCCCCEe
Confidence 7889999996 46777776432 3478899999998766531 2355799998 46777666542 233578
Q ss_pred EeEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 019847 286 DLSQSPDGLTVATAGADETIRFWEAFGPSG 315 (335)
Q Consensus 286 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 315 (335)
.+++.|||.+++ ++.++.|++|+.....+
T Consensus 248 ~vav~~dG~l~V-~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 248 DVALMDDGSVVL-ASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp EEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred EEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence 999999997555 56789999999886543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.47 E-value=1.6e-10 Score=89.50 Aligned_cols=237 Identities=8% Similarity=0.002 Sum_probs=150.4
Q ss_pred CCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeee
Q 019847 59 DYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVT 137 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 137 (335)
.....+++.++|+..++.. ..+.+..++...................+++.+ +++++++....+.+++++-..... .
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~-~ 91 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQT-V 91 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCE-E
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeecccee-e
Confidence 4568999999999766654 457777776654433322222234567889988 888887777766776665443332 2
Q ss_pred EEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEE
Q 019847 138 SCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIK 217 (335)
Q Consensus 138 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (335)
. ..........+++.++++++++-..+..+..++...... ..... ........++++|++. ++++.. .++.|.
T Consensus 92 ~-~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~--~~~~~-~~~~~p~~i~~~~~g~-~~v~~~--~~~~i~ 164 (260)
T d1rwia_ 92 L-PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--TVLPF-TGLNDPDGVAVDNSGN-VYVTDT--DNNRVV 164 (260)
T ss_dssp C-CCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC--EECCC-CSCCSCCEEEECTTCC-EEEEEG--GGTEEE
T ss_pred e-eeeeeeecccccccccceeEeecccccccccccccccee--eeeee-cccCCcceeeecCCCC-Eeeecc--cccccc
Confidence 1 122235678999999999888776777777777544221 11111 1234457899999886 555544 678899
Q ss_pred EEECCCCceEEEe-ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEE
Q 019847 218 IWNVQKGTCIHGI-DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTV 296 (335)
Q Consensus 218 i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 296 (335)
.+|.......... ..-.....++++++|..+++. ...+.|..++.............-.....|+++++|.++
T Consensus 165 ~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd------~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~ 238 (260)
T d1rwia_ 165 KLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTE------HNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVY 238 (260)
T ss_dssp EECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEE------TTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEE
T ss_pred ccccccceeeeeeccccCCCccceeeeeeeeeeee------cCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEE
Confidence 9998755433322 223457889999999876655 557788888765443322222233456899999999888
Q ss_pred EEEeCCCcEEEEec
Q 019847 297 ATAGADETIRFWEA 310 (335)
Q Consensus 297 ~~~~~dg~v~iw~~ 310 (335)
++-..+++|+..+.
T Consensus 239 vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 239 VADRGNDRVVKLTS 252 (260)
T ss_dssp EEEGGGTEEEEECC
T ss_pred EEECCCCEEEEEeC
Confidence 77667776665543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.46 E-value=1.7e-10 Score=91.76 Aligned_cols=241 Identities=8% Similarity=0.055 Sum_probs=155.9
Q ss_pred CCceEEEEcCCCCEEEEEEC-------CCcEEEEeCCCceeEeeeccc----ccceeEeeecCCCCCEEEEeeCCCcEEE
Q 019847 59 DYPTSVSWSHDAKTLAVGYM-------DSKLQLWDAETSKLVRNLEGH----HRRVATSSWNHWNGHILTSGSKDKSIIN 127 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 127 (335)
.....++|.|+|++.++... +|+|..||..+++........ ......+.|.+ +++.++++...+.+..
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~ 96 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEE
T ss_pred CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEE
Confidence 34578899999997776432 467999998887654333221 23466899998 8888888877777888
Q ss_pred EecccCCeeeEEeecCCC----CEEEEEeecCCCEEEEEeC---------------CCeEEEEEccCCCcccceeeccCC
Q 019847 128 HDVRVSNNVTSCIKAHSG----EVCGLKWSNEGNLLASGGD---------------DNVVRIWERSKMSSSKSLHRFTDH 188 (335)
Q Consensus 128 ~d~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~ 188 (335)
++......... .....+ ..+.+++.++|++.++-.. +|.|..++... + .......
T Consensus 97 ~~~~g~~~~~~-~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg----~-~~~~~~~ 170 (314)
T d1pjxa_ 97 VQTDGTFEEIA-KKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG----Q-MIQVDTA 170 (314)
T ss_dssp EETTSCEEECC-SBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS----C-EEEEEEE
T ss_pred EeCCCcEEEEE-eccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC----c-eeEeeCC
Confidence 88764332111 111111 3577899999988776432 23444444321 1 1111112
Q ss_pred CCCeeEEEecCCCC----cEEEEecCCCCCeEEEEECCCCceEEE------eec--CCcEeEEEeCCCCceeeeeeeeee
Q 019847 189 CGGVKALAWSPHQV----NVLATGGGREDGCIKIWNVQKGTCIHG------IDA--KAQICGLEWNRHHKEILSGHGFSA 256 (335)
Q Consensus 189 ~~~v~~~~~~~~~~----~~~~~~~g~~d~~i~i~d~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 256 (335)
-...+.++|+|+++ .++++.+ ..+.|..||+.....+.. +.. ....-.+++.++|+..++.
T Consensus 171 ~~~pNGi~~~~d~d~~~~~lyv~d~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~----- 243 (314)
T d1pjxa_ 171 FQFPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN----- 243 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE-----
T ss_pred cceeeeeEECCCCCcceeEEEEEee--cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEE-----
Confidence 23346789988764 4666655 788999998764433221 111 1235678999999876654
Q ss_pred ecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCC-EEEEEeCCCcEEEEecCCCC
Q 019847 257 SGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGL-TVATAGADETIRFWEAFGPS 314 (335)
Q Consensus 257 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~ 314 (335)
...+.|.+||.+.++.+..+..+....++++|.||++ ++++.+.+|.|...++..+-
T Consensus 244 -~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 244 -WGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp -ETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred -cCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence 3478999999888887777766666789999999987 45666777877777765543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.46 E-value=1.4e-10 Score=91.92 Aligned_cols=230 Identities=9% Similarity=0.004 Sum_probs=156.7
Q ss_pred CceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE
Q 019847 60 YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC 139 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 139 (335)
.+..+++.|||+++++...+++|..++... + ...+......+.+++|.+ +++++++...++.+..++..........
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~ 105 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET 105 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccceee
Confidence 577899999999999988899999888553 3 333444667899999999 8999999988899988887654332222
Q ss_pred ee--cCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccce-------eeccCCCCCeeEEEecCCCCcEEEEecC
Q 019847 140 IK--AHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSL-------HRFTDHCGGVKALAWSPHQVNVLATGGG 210 (335)
Q Consensus 140 ~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~g 210 (335)
+. ........+++.++++++++-+.++.+..+|.......... ............+.+. +..++.+..
T Consensus 106 ~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~- 182 (302)
T d2p4oa1 106 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT- 182 (302)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET-
T ss_pred ccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC-
Confidence 22 34456889999999999988888888888886653211100 0111122234566665 445777765
Q ss_pred CCCCeEEEEECCCCceEE---EeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCc-eeecccCCCCceeE
Q 019847 211 REDGCIKIWNVQKGTCIH---GIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMT-KVGELQSSNSRILD 286 (335)
Q Consensus 211 ~~d~~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~ 286 (335)
..+.|..++........ .+........++++++|...++. ..++.|..++..... .+......-...++
T Consensus 183 -~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~------~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~ 255 (302)
T d2p4oa1 183 -EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGAT------HIYNSVVRIAPDRSTTIIAQAEQGVIGSTA 255 (302)
T ss_dssp -TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEEC------BTTCCEEEECTTCCEEEEECGGGTCTTEEE
T ss_pred -CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEE------cCCCcEEEECCCCCEEEEEecCCCCCCceE
Confidence 78999999886543322 22234456779999999876654 457889998865432 23334434455789
Q ss_pred eEE---cCCCCEEEEEeCC
Q 019847 287 LSQ---SPDGLTVATAGAD 302 (335)
Q Consensus 287 ~~~---~~~~~~l~~~~~d 302 (335)
++| ++|++.|+.++..
T Consensus 256 vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 256 VAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EEECCSTTTTTEEEEEECT
T ss_pred EEEcCCCCCCCEEEEECCC
Confidence 999 6788888766543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.40 E-value=2.8e-09 Score=84.90 Aligned_cols=229 Identities=8% Similarity=0.064 Sum_probs=149.9
Q ss_pred CCCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCC----CcEEEEecccC
Q 019847 58 DDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD----KSIINHDVRVS 133 (335)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~ 133 (335)
...+..++|.++|++.++-...+.|..|+.++++....+.........+++.+ +++++++...+ +.+...+....
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCc
Confidence 34456899999999777777889999999887776666655666788999999 88888775432 33444444433
Q ss_pred CeeeEEee--cCCCCEEEEEeecCCCEEEEEeC------CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEE
Q 019847 134 NNVTSCIK--AHSGEVCGLKWSNEGNLLASGGD------DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVL 205 (335)
Q Consensus 134 ~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 205 (335)
.. ..... .-......+++.++|++.++... .+.+..++... ..+..+...-...+.++|+|+++.++
T Consensus 118 ~~-~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg----~~~~~~~~~~~~pnGia~s~dg~~ly 192 (319)
T d2dg1a1 118 NL-QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF----RTVTPIIQNISVANGIALSTDEKVLW 192 (319)
T ss_dssp SC-EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS----CCEEEEEEEESSEEEEEECTTSSEEE
T ss_pred ee-eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc----ceeEEEeeccceeeeeeeccccceEE
Confidence 22 22221 11235788999999987666432 12355554332 11222222223457899999998888
Q ss_pred EEecCCCCCeEEEEECCCC-ceEEEe--------ecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeec
Q 019847 206 ATGGGREDGCIKIWNVQKG-TCIHGI--------DAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE 276 (335)
Q Consensus 206 ~~~~g~~d~~i~i~d~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 276 (335)
++.+ ..+.|+.||+... ...... ........++++++|+..++. ...+.|.+||. .++.+.+
T Consensus 193 vad~--~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~------~~~g~V~~~~p-~G~~l~~ 263 (319)
T d2dg1a1 193 VTET--TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM------YGQGRVLVFNK-RGYPIGQ 263 (319)
T ss_dssp EEEG--GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE------ETTTEEEEECT-TSCEEEE
T ss_pred Eecc--cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEE------cCCCEEEEECC-CCcEEEE
Confidence 8766 7899999998643 211111 112346679999999876665 45899999994 6888776
Q ss_pred ccC------CCCceeEeEEcCCCCEEEEEeC
Q 019847 277 LQS------SNSRILDLSQSPDGLTVATAGA 301 (335)
Q Consensus 277 ~~~------~~~~i~~~~~~~~~~~l~~~~~ 301 (335)
+.. +...+++++|.+++..+++...
T Consensus 264 i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 264 ILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp EECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred EeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 642 3346789999998776666543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=1.9e-09 Score=83.62 Aligned_cols=236 Identities=13% Similarity=0.096 Sum_probs=145.9
Q ss_pred cEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCC-C--cEEEEecccCCeeeEEeecCCCCEEEEEeecCCC
Q 019847 81 KLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD-K--SIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGN 157 (335)
Q Consensus 81 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 157 (335)
.|.|.|.. |...+.+..+...+...+|+| +|+.|+..... + .+.+.+..... ...+..+........|+|+++
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~ 95 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGS 95 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCC--EEEEECCSSCEEEEEECTTSS
T ss_pred EEEEEcCC-CCCcEEEecCCCceeeeEECC-CCCEEEEEEeeccCcceeeeecccCc--eeEEeeeecccccceecCCCC
Confidence 57777765 444445555677888999999 88888765433 3 35555554333 445566788889999999999
Q ss_pred EEEEEeCC-CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCC--eEEEEECCCCceEEEeecCC
Q 019847 158 LLASGGDD-NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDG--CIKIWNVQKGTCIHGIDAKA 234 (335)
Q Consensus 158 ~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~~~~ 234 (335)
.++..... +...++...... .................+++++..++.+.. .++ .|...++..+..........
T Consensus 96 ~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~i~~~~~~~~~~~~~~~~~~ 171 (269)
T d2hqsa1 96 KLAFALSKTGSLNLYVMDLAS--GQIRQVTDGRSNNTEPTWFPDSQNLAFTSD--QAGRPQVYKVNINGGAPQRITWEGS 171 (269)
T ss_dssp EEEEEECTTSSCEEEEEETTT--CCEEECCCCSSCEEEEEECTTSSEEEEEEC--TTSSCEEEEEETTSSCCEECCCSSS
T ss_pred eeeEeeecCCccceeeccccc--ccceeeeeccccccccccccccccceeccc--ccCCceEeeeecccccceeeecccc
Confidence 88876643 333333322211 112222234444556678888877777664 444 56677777666555555566
Q ss_pred cEeEEEeCCCCceeeeeeeeeeecCCC--eEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeC---CCcEEEEe
Q 019847 235 QICGLEWNRHHKEILSGHGFSASGDGN--KLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA---DETIRFWE 309 (335)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~v~iw~ 309 (335)
......|+|+++.++... ...+ .+.+.+...+.. ....+........|+|||+.|+-.+. ...+.+++
T Consensus 172 ~~~~~~~spdg~~~~~~~-----~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~ 244 (269)
T d2hqsa1 172 QNQDADVSSDGKFMVMVS-----SNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS 244 (269)
T ss_dssp EEEEEEECTTSSEEEEEE-----ECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred cccccccccccceeEEEe-----ecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEE
Confidence 778889999999988653 2333 444555554443 33344455678899999998875543 34688899
Q ss_pred cCCCCCCCCccccccccccceec
Q 019847 310 AFGPSGDEDSVSHLAGLVSLKTS 332 (335)
Q Consensus 310 ~~~~~~~~~~~~~~~~i~~~~~~ 332 (335)
+.+.... ++......+....++
T Consensus 245 ~dg~~~~-~lt~~~g~~~~p~WS 266 (269)
T d2hqsa1 245 TDGRFKA-RLPATDGQVKFPAWS 266 (269)
T ss_dssp TTSCCEE-ECCCSSSEEEEEEEC
T ss_pred CCCCCEE-EEeCCCCcEEeEEeC
Confidence 8876543 233333444444443
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.36 E-value=1.3e-09 Score=84.19 Aligned_cols=243 Identities=9% Similarity=0.023 Sum_probs=149.1
Q ss_pred ccCCCCcccccceeeeecCC-ceEEEe--cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEE
Q 019847 8 LDAPYLMEDYYSKVIDWGRN-NVLAVA--LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQL 84 (335)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (335)
|+............++++++ .++.+. ..+.+..++...... ......+ ......++++++++++++....+.+++
T Consensus 5 ~~~~~~~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~-~~~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~ 82 (260)
T d1rwia_ 5 LPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTL 82 (260)
T ss_dssp CCCCSCCSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CE-EECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEE
T ss_pred EecccCCCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceE-EEeccCC-ccCceEEEEcCCCCEEEeeeeeceeee
Confidence 33334333445566787764 444443 345666665543332 2222222 344688999999988777766667777
Q ss_pred EeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeC
Q 019847 85 WDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGD 164 (335)
Q Consensus 85 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 164 (335)
++-.+...+.... .......+++.+ +++++++-..+..+..++......... ..........+++.++++++++...
T Consensus 83 ~~~~~~~~~~~~~-~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~i~~~~~g~~~v~~~~ 159 (260)
T d1rwia_ 83 AAGSNNQTVLPFD-GLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVL-PFTGLNDPDGVAVDNSGNVYVTDTD 159 (260)
T ss_dssp CTTCSCCEECCCC-SCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEEC-CCCSCCSCCEEEECTTCCEEEEEGG
T ss_pred eeeccceeeeeee-eeeecccccccc-cceeEeeccccccccccccccceeeee-eecccCCcceeeecCCCCEeeeccc
Confidence 7655555444333 234568899988 888888776777777777654332221 1122344578999999998888888
Q ss_pred CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec--CCcEeEEEeC
Q 019847 165 DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA--KAQICGLEWN 242 (335)
Q Consensus 165 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~ 242 (335)
++.|..+|.+... ..............+++.+++ .|+++.. ..+.|..++...... ..+.. -.....++++
T Consensus 160 ~~~i~~~d~~~~~---~~~~~~~~~~~p~gi~~d~~g-~l~vsd~--~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d 232 (260)
T d1rwia_ 160 NNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAG-TVYVTEH--NTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVD 232 (260)
T ss_dssp GTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTC-CEEEEET--TTTEEEEECTTCSCC-EECCCCSCCCEEEEEEC
T ss_pred cccccccccccce---eeeeeccccCCCccceeeeee-eeeeeec--CCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEe
Confidence 8899999966432 122222344557889999998 4666665 678888888654432 22222 2457889999
Q ss_pred CCCceeeeeeeeeeecCCCeEEEEEC
Q 019847 243 RHHKEILSGHGFSASGDGNKLCLWKY 268 (335)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~i~d~ 268 (335)
++|..+++- ..++.|+.++.
T Consensus 233 ~~g~l~vad------~~~~rI~~i~~ 252 (260)
T d1rwia_ 233 SDRTVYVAD------RGNDRVVKLTS 252 (260)
T ss_dssp TTCCEEEEE------GGGTEEEEECC
T ss_pred CCCCEEEEE------CCCCEEEEEeC
Confidence 998766553 34666665553
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=9.7e-09 Score=85.99 Aligned_cols=285 Identities=12% Similarity=0.128 Sum_probs=165.2
Q ss_pred eeecCC-ceEEEecCCeEEEEEecCCceeeEEeecC-CCCCceEEEEcCCCCEEEEEE---------CCCcEEEEeCCCc
Q 019847 22 IDWGRN-NVLAVALGPVLFLWKWENGKVKKLLQVPG-EDDYPTSVSWSHDAKTLAVGY---------MDSKLQLWDAETS 90 (335)
Q Consensus 22 ~~~~~~-~~~~~~~~~~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~---------~dg~i~iw~~~~~ 90 (335)
..|.++ .++.-..+|.|.+||+.+++...++.... ....+....||||+++++... ..+.+.++|+.++
T Consensus 22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~ 101 (465)
T d1xfda1 22 AKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (465)
T ss_dssp CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred CEEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence 457664 45545578899999999887654443322 234577889999999988764 3578899999988
Q ss_pred eeEeee--cccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCE-----------------EEEE
Q 019847 91 KLVRNL--EGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEV-----------------CGLK 151 (335)
Q Consensus 91 ~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i-----------------~~~~ 151 (335)
+..... ......+....|+| +++.++-.. ++.|.+.+...+.....+..+....+ ..+.
T Consensus 102 ~~~~l~~~~~~~~~l~~~~wSP-DG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~ 179 (465)
T d1xfda1 102 DPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW 179 (465)
T ss_dssp CCEECCCTTCCSCCCSBCCBCS-STTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred ceeeccCccCCccccceeeecc-CCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence 754332 23345567789999 888877665 66788888775544332222222222 4678
Q ss_pred eecCCCEEEEEeCC-CeE---------------------------------EEEEccCCCccccee---eccCCCCCeeE
Q 019847 152 WSNEGNLLASGGDD-NVV---------------------------------RIWERSKMSSSKSLH---RFTDHCGGVKA 194 (335)
Q Consensus 152 ~~~~~~~l~~~~~d-g~i---------------------------------~iwd~~~~~~~~~~~---~~~~~~~~v~~ 194 (335)
|||||++||....| ..+ .++|+.......... ........+..
T Consensus 180 WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~ 259 (465)
T d1xfda1 180 WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM 259 (465)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred ECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeee
Confidence 99999999987532 223 333332211100000 00111223677
Q ss_pred EEecCCCCcEEEEecC-CCCCeEEEEECCCCceEEEeecCC------cEeEEEeCCCCceeeeeeeeeeecCC--CeEEE
Q 019847 195 LAWSPHQVNVLATGGG-REDGCIKIWNVQKGTCIHGIDAKA------QICGLEWNRHHKEILSGHGFSASGDG--NKLCL 265 (335)
Q Consensus 195 ~~~~~~~~~~~~~~~g-~~d~~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i 265 (335)
+.|+|+++.++..... .....+.++|..+++....+.... .-....|+|+|+.++.-. ....+ +.+..
T Consensus 260 ~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~---~se~~g~~~ly~ 336 (465)
T d1xfda1 260 VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIR---AIPQGGRGKFYH 336 (465)
T ss_dssp EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEE---EECCSSSSCEEE
T ss_pred eEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEE---eeeecccCceEE
Confidence 8999998644444331 122368889999998765554221 124567899998654211 11222 33444
Q ss_pred EECC------CCceeecccCCCCceeEe-EEcCCCCEE-EEEeCCC--cEEEEecC
Q 019847 266 WKYP------NMTKVGELQSSNSRILDL-SQSPDGLTV-ATAGADE--TIRFWEAF 311 (335)
Q Consensus 266 ~d~~------~~~~~~~~~~~~~~i~~~-~~~~~~~~l-~~~~~dg--~v~iw~~~ 311 (335)
+++. .+..+..+....-.|+.+ +|+++++.+ +++..++ .-.+|.+.
T Consensus 337 ~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~ 392 (465)
T d1xfda1 337 ITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (465)
T ss_dssp EEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred EEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEE
Confidence 3321 233344444444556665 688877655 4555442 34566554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.30 E-value=2.5e-09 Score=86.87 Aligned_cols=248 Identities=9% Similarity=0.015 Sum_probs=146.6
Q ss_pred ccceeeeecCC-ceEEEecCCeEEEEEecCCc-eeeEEeecCCCCCceEEEEcCCCCEEEEEE---CCCcEEEEeCCC-c
Q 019847 17 YYSKVIDWGRN-NVLAVALGPVLFLWKWENGK-VKKLLQVPGEDDYPTSVSWSHDAKTLAVGY---MDSKLQLWDAET-S 90 (335)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~~~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iw~~~~-~ 90 (335)
..+..|+++++ +.+.+...+.+..|.+.... ........ .......++++++++.+.... ..+.+..+.+.. +
T Consensus 40 ~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~ 118 (365)
T d1jofa_ 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHP-IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEE-CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeec-CCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCC
Confidence 33455888874 45555566788888887533 32222221 234467788999998543322 245565554321 1
Q ss_pred ------------eeEeee----cccccceeEeeecCCCCCEEEEeeC-CCcEEEEecccCCeeeE--Ee--ecCCCCEEE
Q 019847 91 ------------KLVRNL----EGHHRRVATSSWNHWNGHILTSGSK-DKSIINHDVRVSNNVTS--CI--KAHSGEVCG 149 (335)
Q Consensus 91 ------------~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~--~~--~~~~~~i~~ 149 (335)
+.-... ......+.++.|+| ++++++++.. ...|.+|+......+.. .. .........
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~ 197 (365)
T d1jofa_ 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred CcceeEeeeecceecCcccCcccCCCCcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEE
Confidence 110000 11223478999999 8887777654 45788888764443221 11 123457899
Q ss_pred EEeecCCCEEEEEe-CCCeEEEEEccCCCcccc--eeec--------------cCCCCCeeEEEecCCCCcEEEEecCC-
Q 019847 150 LKWSNEGNLLASGG-DDNVVRIWERSKMSSSKS--LHRF--------------TDHCGGVKALAWSPHQVNVLATGGGR- 211 (335)
Q Consensus 150 ~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~--~~~~--------------~~~~~~v~~~~~~~~~~~~~~~~~g~- 211 (335)
++|+|+++++.+.. .+++|.+|++........ .... ..+......+.++|+|++++++..+.
T Consensus 198 i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~ 277 (365)
T d1jofa_ 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK 277 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred EEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCC
Confidence 99999999886655 578999999875432111 1110 01122345789999999888875421
Q ss_pred --CCCeEEEEECCCCceEEEe-------ecCCcEeEEEeCC-CCceeeeeeeeeeecCCCeEEEEECCCC
Q 019847 212 --EDGCIKIWNVQKGTCIHGI-------DAKAQICGLEWNR-HHKEILSGHGFSASGDGNKLCLWKYPNM 271 (335)
Q Consensus 212 --~d~~i~i~d~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~d~~~~ 271 (335)
....|..|++.....+... ........++++| +|++++++. ..++.|.+|++...
T Consensus 278 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~-----~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 278 FELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD-----DQEGWLEIYRWKDE 342 (365)
T ss_dssp TTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC-----SSSCEEEEEEEETT
T ss_pred CccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEe-----CCCCeEEEEEEeCC
Confidence 1234777877654322211 1234567799998 788886653 67899999986543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.27 E-value=3.2e-08 Score=77.06 Aligned_cols=236 Identities=14% Similarity=0.229 Sum_probs=155.8
Q ss_pred ceeeeecC-CceEEEe-cCCeEEEEEecCCceeeEEeecC----CCCCceEEEEcCCCC-EEEEE-ECCCcEEEEeCCCc
Q 019847 19 SKVIDWGR-NNVLAVA-LGPVLFLWKWENGKVKKLLQVPG----EDDYPTSVSWSHDAK-TLAVG-YMDSKLQLWDAETS 90 (335)
Q Consensus 19 ~~~~~~~~-~~~~~~~-~~~~i~vw~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~-~l~~~-~~dg~i~iw~~~~~ 90 (335)
...++.++ +.++++. .++.|++||.+ ++....+...+ .......+++.++.. .+++. +.++.|..++. .+
T Consensus 25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g 102 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YG 102 (279)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TS
T ss_pred ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-cc
Confidence 35577766 4555553 56789999865 55443332211 122345667666543 44433 34567777875 46
Q ss_pred eeEeeec-ccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEe--ecCCCCEEEEEeecCCCEEEEEeCCCe
Q 019847 91 KLVRNLE-GHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI--KAHSGEVCGLKWSNEGNLLASGGDDNV 167 (335)
Q Consensus 91 ~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~ 167 (335)
+....+. ........++..+ ++.++++....+.+.+++.. ++. ...+ ..+......+++.++++.+++....+.
T Consensus 103 ~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~-~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~ 179 (279)
T d1q7fa_ 103 QFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNV-LHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 179 (279)
T ss_dssp CEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCE-EEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred cceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-Cce-eecccccccccccceeeeccceeEEeeeccccc
Confidence 6665553 2345677888887 88888888878888888865 332 3322 345567888999999998888888899
Q ss_pred EEEEEccCCCcccceeec--cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC---CcEeEEEeC
Q 019847 168 VRIWERSKMSSSKSLHRF--TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK---AQICGLEWN 242 (335)
Q Consensus 168 i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~ 242 (335)
|++||... +.+..+ .+.......+++.++|. ++++.. ..++.|.+|+ .+|+.+..+... .....+++.
T Consensus 180 V~~~d~~G----~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~-~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~ 252 (279)
T d1q7fa_ 180 VKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGE-ILIADN-HNNFNLTIFT-QDGQLISALESKVKHAQCFDVALM 252 (279)
T ss_dssp EEEEETTC----CEEEEESCTTTSCSEEEEEECTTCC-EEEEEC-SSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEE
T ss_pred eeeeecCC----ceeeeecccccccCCcccccccCCe-EEEEEC-CCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEe
Confidence 99999653 233333 22344578999999996 555532 1355799998 568887777543 357889999
Q ss_pred CCCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 243 RHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
|+|..+++ ..++.|++|......+
T Consensus 253 ~dG~l~V~-------~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 253 DDGSVVLA-------SKDYRLYIYRYVQLAP 276 (279)
T ss_dssp TTTEEEEE-------ETTTEEEEEECSCCCC
T ss_pred CCCcEEEE-------eCCCeEEEEEeeeecC
Confidence 99975543 3488999999877654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.23 E-value=9.8e-09 Score=81.07 Aligned_cols=209 Identities=13% Similarity=0.109 Sum_probs=139.2
Q ss_pred ceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEE
Q 019847 90 SKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVR 169 (335)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 169 (335)
.+.+..+.. ...+..+++.| +++++++...+++|..++... . ...+......+.+++|+++|+++++...++.+.
T Consensus 18 ~~v~~~~p~-~~~~e~iAv~p-dG~l~vt~~~~~~I~~i~p~g-~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~ 92 (302)
T d2p4oa1 18 AKIITSFPV-NTFLENLASAP-DGTIFVTNHEVGEIVSITPDG-N--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIP 92 (302)
T ss_dssp EEEEEEECT-TCCEEEEEECT-TSCEEEEETTTTEEEEECTTC-C--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred ccEEEECCC-CCCcCCEEECC-CCCEEEEeCCCCEEEEEeCCC-C--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEE
Confidence 344444432 23577899999 999999999999998888653 2 333455677899999999999999988888898
Q ss_pred EEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec-----------CCcEeE
Q 019847 170 IWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA-----------KAQICG 238 (335)
Q Consensus 170 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-----------~~~~~~ 238 (335)
.++......................+.+.+++. ++++.+ .++.+..+|...+........ ......
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng 169 (302)
T d2p4oa1 93 VVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADS--YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG 169 (302)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEET--TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred EEEecccccceeeccccCCccccceeEEccCCC-EEeecc--ccccceeeeccCCcceeEecCCccceeeccCccccccc
Confidence 888765332221211223445678999999985 555544 688899999887654333221 112344
Q ss_pred EEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeeccc--CCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCC
Q 019847 239 LEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQ--SSNSRILDLSQSPDGLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 313 (335)
+.++. ..++. +.+..+.|..++........... ........++++++|+++++...++.|..++....
T Consensus 170 i~~~~--~~l~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~ 239 (302)
T d2p4oa1 170 LKRFG--NFLYV-----SNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS 239 (302)
T ss_dssp EEEET--TEEEE-----EETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred ccccC--Cceee-----ecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence 55543 33332 23668889888876644332211 12334678999999998888888899988876643
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.22 E-value=5.5e-08 Score=76.96 Aligned_cols=239 Identities=12% Similarity=0.160 Sum_probs=149.4
Q ss_pred eeeeecCC-ceEEEec--------CCeEEEEEecCCceeeEEee--cCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCC
Q 019847 20 KVIDWGRN-NVLAVAL--------GPVLFLWKWENGKVKKLLQV--PGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAE 88 (335)
Q Consensus 20 ~~~~~~~~-~~~~~~~--------~~~i~vw~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 88 (335)
..++|+++ .++.+.. +++|..||.++++....... .........++|.++++.++++...+.|..++.+
T Consensus 21 EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~ 100 (314)
T d1pjxa_ 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD 100 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT
T ss_pred eEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCC
Confidence 44677764 5555543 35688888888765333211 1112346789999999988888877789999977
Q ss_pred CceeEeeecccc----cceeEeeecCCCCCEEEEeeC---------------CCcEEEEecccCCeeeEEeecCCCCEEE
Q 019847 89 TSKLVRNLEGHH----RRVATSSWNHWNGHILTSGSK---------------DKSIINHDVRVSNNVTSCIKAHSGEVCG 149 (335)
Q Consensus 89 ~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~---------------dg~i~~~d~~~~~~~~~~~~~~~~~i~~ 149 (335)
............ .....+++.+ ++++.++-.. .|.|..++. ........ ......+.
T Consensus 101 g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~--dg~~~~~~-~~~~~pNG 176 (314)
T d1pjxa_ 101 GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT--DGQMIQVD-TAFQFPNG 176 (314)
T ss_dssp SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT--TSCEEEEE-EEESSEEE
T ss_pred CcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEee--cCceeEee-CCcceeee
Confidence 554322211111 1357789988 8888776432 233444443 22222222 22334578
Q ss_pred EEeecCCC-----EEEEEeCCCeEEEEEccCCCcccc---eeeccC-CCCCeeEEEecCCCCcEEEEecCCCCCeEEEEE
Q 019847 150 LKWSNEGN-----LLASGGDDNVVRIWERSKMSSSKS---LHRFTD-HCGGVKALAWSPHQVNVLATGGGREDGCIKIWN 220 (335)
Q Consensus 150 ~~~~~~~~-----~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~-~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d 220 (335)
++|+|++. ++++-+..+.|..||+........ ...+.. .......+++.++|. ++++.. ..+.|.+||
T Consensus 177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~--~~g~I~~~d 253 (314)
T d1pjxa_ 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANW--GSSHIEVFG 253 (314)
T ss_dssp EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEE--TTTEEEEEC
T ss_pred eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc-EEEEEc--CCCEEEEEe
Confidence 99999764 445556778899998764322211 112221 122356799999996 544443 578999999
Q ss_pred CCCCceEEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCC
Q 019847 221 VQKGTCIHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPN 270 (335)
Q Consensus 221 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~ 270 (335)
.+.++.+..+..+ ...++++|.|+++.+... .+.++.|..+++..
T Consensus 254 p~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt-----~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 254 PDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT-----EHENNAVWKFEWQR 299 (314)
T ss_dssp TTCBSCSEEEECSSSCEEEEEECTTSSEEEEE-----ETTTTEEEEEECSS
T ss_pred CCCCEEEEEEECCCCCEEEEEEeCCCCEEEEE-----ECCCCcEEEEECCC
Confidence 9888877777654 568899999999766443 25678888888754
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=1.9e-07 Score=78.00 Aligned_cols=293 Identities=9% Similarity=0.038 Sum_probs=160.5
Q ss_pred cccceeeeecCC--ceEEEe---------cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEE
Q 019847 16 DYYSKVIDWGRN--NVLAVA---------LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQL 84 (335)
Q Consensus 16 ~~~~~~~~~~~~--~~~~~~---------~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (335)
...+....++++ .++... ..+.+.++|+.+++..++.........+....|||||+.+|... ++.|.+
T Consensus 60 ~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~ 138 (465)
T d1xfda1 60 SLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYY 138 (465)
T ss_dssp TTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEE
T ss_pred ccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEE
Confidence 345556667774 344432 24688999999998766544444455667789999999999886 678999
Q ss_pred EeCCCceeEeeecccc-c-----------------ceeEeeecCCCCCEEEEeeC-CCcE--------------------
Q 019847 85 WDAETSKLVRNLEGHH-R-----------------RVATSSWNHWNGHILTSGSK-DKSI-------------------- 125 (335)
Q Consensus 85 w~~~~~~~~~~~~~~~-~-----------------~v~~~~~~~~~~~~l~~~~~-dg~i-------------------- 125 (335)
.+..+++.++...... . .-..+-|+| +++.|+.... +..+
T Consensus 139 ~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~ 217 (465)
T d1xfda1 139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH 217 (465)
T ss_dssp ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred EecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC-CCCeEEEEEecccccceeecccccccccceeeeee
Confidence 9987776554433211 1 114677999 8888887642 2223
Q ss_pred -------------EEEecccCCeeeEEee-----cCCCCEEEEEeecCCCEEEEEeC-C---CeEEEEEccCCCccccee
Q 019847 126 -------------INHDVRVSNNVTSCIK-----AHSGEVCGLKWSNEGNLLASGGD-D---NVVRIWERSKMSSSKSLH 183 (335)
Q Consensus 126 -------------~~~d~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~-d---g~i~iwd~~~~~~~~~~~ 183 (335)
.++|+..+........ ....-+..+.|+|++++++.... + ..+.++|..++.......
T Consensus 218 Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~ 297 (465)
T d1xfda1 218 YPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE 297 (465)
T ss_dssp CCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred ccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence 3344432221111110 11223677899999876665432 2 257788877654322221
Q ss_pred eccCCCCC----eeEEEecCCCCcEEEEecCCCC--CeEEEEECC------CCceEEEeec-CCcEeEE-EeCCCCceee
Q 019847 184 RFTDHCGG----VKALAWSPHQVNVLATGGGRED--GCIKIWNVQ------KGTCIHGIDA-KAQICGL-EWNRHHKEIL 249 (335)
Q Consensus 184 ~~~~~~~~----v~~~~~~~~~~~~~~~~~g~~d--~~i~i~d~~------~~~~~~~~~~-~~~~~~~-~~~~~~~~~~ 249 (335)
. . .... -....|+|+|..++....-..+ +.++..++. .+..+..+.. .-.|..+ .|+++++.+.
T Consensus 298 e-~-~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vy 375 (465)
T d1xfda1 298 D-E-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIY 375 (465)
T ss_dssp E-E-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEE
T ss_pred E-c-CCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEE
Confidence 1 1 1221 2346789999865432100022 234444322 2233333332 2345554 6888887764
Q ss_pred eeeeeeeec-C--CCeEEEEECCCCceeecc---cCCCCceeEeEEcCCCCEEEEEeCC---CcEEEEecCCCCCC
Q 019847 250 SGHGFSASG-D--GNKLCLWKYPNMTKVGEL---QSSNSRILDLSQSPDGLTVATAGAD---ETIRFWEAFGPSGD 316 (335)
Q Consensus 250 ~~~~~~~~~-~--~~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~ 316 (335)
.. +.. . ...++-.++........+ ........++.|||++++++..... -.+.+++..+++..
T Consensus 376 F~----a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~ 447 (465)
T d1xfda1 376 FL----STEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKM 447 (465)
T ss_dssp EE----ESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEE
T ss_pred EE----EeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEE
Confidence 21 111 1 223444444433322222 1233456789999999998854432 45777776655543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.12 E-value=3.9e-07 Score=72.18 Aligned_cols=224 Identities=9% Similarity=0.096 Sum_probs=139.1
Q ss_pred ceeeeecCC-ceEEEe-cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC----CCcEEEEeCCCcee
Q 019847 19 SKVIDWGRN-NVLAVA-LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM----DSKLQLWDAETSKL 92 (335)
Q Consensus 19 ~~~~~~~~~-~~~~~~-~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~~~ 92 (335)
...++|+++ .++.+. .++.|+.|+.++++...... ........++++++|+++++... .+.+...+..+...
T Consensus 42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~--~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV--SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE--CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe--CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence 356788764 455544 67888888887776543332 33456789999999988777543 23455566555544
Q ss_pred Eeeecc--cccceeEeeecCCCCCEEEEeeCC------CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEE-e
Q 019847 93 VRNLEG--HHRRVATSSWNHWNGHILTSGSKD------KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASG-G 163 (335)
Q Consensus 93 ~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~ 163 (335)
...... .......+.+.+ ++++.++.... +.+..++... .. ...+...-...+.++|+|+++.|..+ +
T Consensus 120 ~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~-~~~~~~~~~~pnGia~s~dg~~lyvad~ 196 (319)
T d2dg1a1 120 QDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF-RT-VTPIIQNISVANGIALSTDEKVLWVTET 196 (319)
T ss_dssp EEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS-CC-EEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred eeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEeccc-ce-eEEEeeccceeeeeeeccccceEEEecc
Confidence 433321 223567888988 88877664322 2354454432 22 22222233456789999999866444 5
Q ss_pred CCCeEEEEEccCCCccc-ce----eeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC----
Q 019847 164 DDNVVRIWERSKMSSSK-SL----HRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA---- 234 (335)
Q Consensus 164 ~dg~i~iwd~~~~~~~~-~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~---- 234 (335)
..+.|+.||+....... .. ............+++.++|. ++++.. ..+.|.+||. .|+.+..+..+.
T Consensus 197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~--~~g~V~~~~p-~G~~l~~i~~P~~~~~ 272 (319)
T d2dg1a1 197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMY--GQGRVLVFNK-RGYPIGQILIPGRDEG 272 (319)
T ss_dssp GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEE--TTTEEEEECT-TSCEEEEEECTTGGGT
T ss_pred cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEc--CCCEEEEECC-CCcEEEEEeCCCcCCC
Confidence 67899999986432211 11 11111122356799999996 555443 5899999995 689888887543
Q ss_pred ---cEeEEEeCCCCceeeee
Q 019847 235 ---QICGLEWNRHHKEILSG 251 (335)
Q Consensus 235 ---~~~~~~~~~~~~~~~~~ 251 (335)
.+++++|.+....++..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~t 292 (319)
T d2dg1a1 273 HMLRSTHPQFIPGTNQLIIC 292 (319)
T ss_dssp CSCBCCEEEECTTSCEEEEE
T ss_pred cCceeeeEEEeCCCCEEEEE
Confidence 46789998887766554
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.93 E-value=8.7e-07 Score=68.53 Aligned_cols=234 Identities=8% Similarity=0.013 Sum_probs=127.9
Q ss_pred EEcCC--CCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEee-CCC-----cEEEEecccCCee
Q 019847 65 SWSHD--AKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGS-KDK-----SIINHDVRVSNNV 136 (335)
Q Consensus 65 ~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg-----~i~~~d~~~~~~~ 136 (335)
..+|+ |+.+|..+ +|.|.+.|+.+++.. .+..+...+....|+| +++.|+... .++ .|.+++...+..
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~- 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEI- 80 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEE-
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCce-
Confidence 46788 99988775 567999999987754 5666778889999999 888877543 222 366666654432
Q ss_pred eEEe------ecCCCCEEEEEeecCCCEEEEEeCC------CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcE
Q 019847 137 TSCI------KAHSGEVCGLKWSNEGNLLASGGDD------NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNV 204 (335)
Q Consensus 137 ~~~~------~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 204 (335)
.+.. ...........|+|+++.|+..... ..+...+.... . .... +....... +.+++..+
T Consensus 81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~--~~~~~~~~-~~~~~~~~ 153 (281)
T d1k32a2 81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI---N-FVPL--NLGPATHI-LFADGRRV 153 (281)
T ss_dssp EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT---E-EEEC--CSCSCSEE-EEETTEEE
T ss_pred EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCc---e-eEEe--cCCcccee-eecCCCeE
Confidence 2211 1112345678899999998876432 23444444321 1 1111 22222333 34444444
Q ss_pred EEEecCCC---------CCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceee
Q 019847 205 LATGGGRE---------DGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVG 275 (335)
Q Consensus 205 ~~~~~g~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~ 275 (335)
+....... ............................++++....... ......|.++|+.+.+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~d~~g~~~~~ 228 (281)
T d1k32a2 154 IGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITD-----IDGFGQIYSTDLDGKDLRK 228 (281)
T ss_dssp EEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEEC-----TTSSCEEEEEETTSCSCEE
T ss_pred EEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecc-----cccccceEEEeCCCCceEE
Confidence 44432000 011122222222222223333344444555543222211 1335678888987766543
Q ss_pred cccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 276 ELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 276 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
....... ....|+|||+.|+-. .++.|+++|+.+++...
T Consensus 229 lt~~~~~--~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 229 HTSFTDY--YPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEK 267 (281)
T ss_dssp CCCCCSS--CEEEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred eecCCCc--ccccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence 2222222 234689999988754 46889999988776543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.86 E-value=1.2e-06 Score=67.77 Aligned_cols=227 Identities=10% Similarity=0.093 Sum_probs=124.0
Q ss_pred CCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC-C-----CcEEEEeCCCceeEeeecc-
Q 019847 26 RNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM-D-----SKLQLWDAETSKLVRNLEG- 98 (335)
Q Consensus 26 ~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~iw~~~~~~~~~~~~~- 98 (335)
++.+ +...++.|.+.|+.+++..++ ..+...+...+|||||+.||.... + ..|.+++..+++.......
T Consensus 12 G~~v-~f~~~~dl~~~d~~~g~~~~L---t~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~ 87 (281)
T d1k32a2 12 GDRI-IFVCCDDLWEHDLKSGSTRKI---VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFS 87 (281)
T ss_dssp TTEE-EEEETTEEEEEETTTCCEEEE---ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCC
T ss_pred CCEE-EEEeCCcEEEEECCCCCEEEE---ecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecC
Confidence 4444 445677899999999886543 345566889999999999987642 2 2477888887766543221
Q ss_pred -----cccceeEeeecCCCCCEEEEeeCC------CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC-
Q 019847 99 -----HHRRVATSSWNHWNGHILTSGSKD------KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN- 166 (335)
Q Consensus 99 -----~~~~v~~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg- 166 (335)
.........|+| +++.|+..... ..+...+..... ... .+........+.+.+..++....+.
T Consensus 88 ~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (281)
T d1k32a2 88 GKSTGRRMFTDVAGFDP-DGNLIISTDAMQPFSSMTCLYRVENDGIN--FVP--LNLGPATHILFADGRRVIGRNTFELP 162 (281)
T ss_dssp EEEETTEECSEEEEECT-TCCEEEEECTTSSSTTCCEEEEEEGGGTE--EEE--CCSCSCSEEEEETTEEEEEESCSCCT
T ss_pred CCccCccccccccccCC-CCCEEEEEEccCCCccceeeeeecCCCce--eEE--ecCCccceeeecCCCeEEEeeccccc
Confidence 123456778999 88877765332 123444444222 111 1222222333333333333322211
Q ss_pred ----------eEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcE
Q 019847 167 ----------VVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQI 236 (335)
Q Consensus 167 ----------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~ 236 (335)
......... .................+.++. ++..........|.++|+.+++... +......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~~~ 235 (281)
T d1k32a2 163 HWKGYRGGTRGKIWIEVNS----GAFKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTDLDGKDLRK-HTSFTDY 235 (281)
T ss_dssp TSTTCCSTTCCEEEEEEET----TEEEEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEETTSCSCEE-CCCCCSS
T ss_pred eeeeeccCCcceeeeeccc----cceeeccCCccccceeeeeccc--cceecccccccceEEEeCCCCceEE-eecCCCc
Confidence 111111111 0111122233344455566653 4443322234568888988766543 3332333
Q ss_pred eEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceee
Q 019847 237 CGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVG 275 (335)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~ 275 (335)
....|+|+|+.|+.. .++.|+++|+.+++...
T Consensus 236 ~~~~~SpDG~~I~f~-------~~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 236 YPRHLNTDGRRILFS-------KGGSIYIFNPDTEKIEK 267 (281)
T ss_dssp CEEEEEESSSCEEEE-------ETTEEEEECTTTCCEEE
T ss_pred ccccCcCCCCEEEEE-------eCCEEEEEECCCCCEEE
Confidence 334689999998753 26889999998877643
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.83 E-value=1.1e-05 Score=62.91 Aligned_cols=219 Identities=8% Similarity=0.003 Sum_probs=142.1
Q ss_pred eEEEEcCCCCEEE-EEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEe
Q 019847 62 TSVSWSHDAKTLA-VGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCI 140 (335)
Q Consensus 62 ~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 140 (335)
-+..|++....|. +--..+.|.-||..+++.. .+. ....+.++++.+ ++.++++ +.+ .+..+|..+++......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAE 95 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEee
Confidence 3566887554444 4346788999999887643 232 345678888887 7776665 444 58889988665322111
Q ss_pred ecC---CCCEEEEEeecCCCEEEEEeCC----CeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCC
Q 019847 141 KAH---SGEVCGLKWSNEGNLLASGGDD----NVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGRED 213 (335)
Q Consensus 141 ~~~---~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d 213 (335)
... ...++.+.+.|+|++.++...+ +.-.+|.+..+.. ......-...+.++|++++..++.+.+ ..
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~----~~~~~~~~~~Ng~~~s~d~~~l~~~dt--~~ 169 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV----TKLFADISIPNSICFSPDGTTGYFVDT--KV 169 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE----EEEEEEESSEEEEEECTTSCEEEEEET--TT
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcE----EEEeeccCCcceeeecCCCceEEEeec--cc
Confidence 111 1247889999999877665422 2345666554321 111122234678999999988888876 78
Q ss_pred CeEEEEECCCC------ceEEEee---cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCce
Q 019847 214 GCIKIWNVQKG------TCIHGID---AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRI 284 (335)
Q Consensus 214 ~~i~i~d~~~~------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i 284 (335)
+.|..+++... +...... .......++++.+|...++. -..+.|..|| ..++.+..+.-....+
T Consensus 170 ~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~------~~~g~V~~~d-p~G~~~~~i~lP~~~~ 242 (295)
T d2ghsa1 170 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR------WGEGAVDRYD-TDGNHIARYEVPGKQT 242 (295)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE------ETTTEEEEEC-TTCCEEEEEECSCSBE
T ss_pred ceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeee------eCCCceEEec-CCCcEeeEecCCCCce
Confidence 89999987432 1111121 23457889999999877664 3478899999 5788888887766679
Q ss_pred eEeEEc-CCCCEEEE
Q 019847 285 LDLSQS-PDGLTVAT 298 (335)
Q Consensus 285 ~~~~~~-~~~~~l~~ 298 (335)
++++|- +|.+.|+.
T Consensus 243 T~~~FGG~d~~~Lyv 257 (295)
T d2ghsa1 243 TCPAFIGPDASRLLV 257 (295)
T ss_dssp EEEEEESTTSCEEEE
T ss_pred EEEEEeCCCCCEEEE
Confidence 999996 56555543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.81 E-value=9.2e-06 Score=61.38 Aligned_cols=273 Identities=9% Similarity=0.101 Sum_probs=175.4
Q ss_pred ccccceeeeecCCceEEEe----cCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc
Q 019847 15 EDYYSKVIDWGRNNVLAVA----LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS 90 (335)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~----~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 90 (335)
..+....+....++++++- ....|.|.|+..+......... --+.-.+|..+.||.-+ ..++.++|+++.
T Consensus 20 ~~i~f~~~T~ESDkyicVRe~~~~~~~VvIidl~n~~~~~Rrpi~-----AdsAIMhP~~~IiALra-g~~LQiFnletK 93 (327)
T d1utca2 20 ANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMK 93 (327)
T ss_dssp GGCSTTTEECSSSSEEEEEEEETTEEEEEEEETTSTTSCEEEECC-----CSEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred cccccccEEEecCCEEEEEeccCCCceEEEEECCCCCcceecccc-----hhhhhcCCCCcEEEEec-CCeEEEEehhHh
Confidence 3444445566667777754 3348999998766533333322 23456889999888776 458999999999
Q ss_pred eeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCC----CCEEEEEeecCCCEEEEEe---
Q 019847 91 KLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHS----GEVCGLKWSNEGNLLASGG--- 163 (335)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~--- 163 (335)
+.++.+. ...+|.--.|. +.+.|+-.+ +..|+-|+++....+.+.+..|. ..|-....+++.++++..+
T Consensus 94 ~klks~~-~~e~VvfWkWi--s~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~ 169 (327)
T d1utca2 94 SKMKAHT-MTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA 169 (327)
T ss_dssp EEEEEEE-CSSCCCEEEES--SSSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEE
T ss_pred hhhceEE-cCCCcEEEEec--CCCEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEec
Confidence 9988887 44678888887 455555444 45799999976555666666554 4677778888889887643
Q ss_pred C----CCeEEEEEccCCCcccceeeccCCCCCeeEEEecCC--CCcEEEEec-CCCCCeEEEEECCCCc---e-----EE
Q 019847 164 D----DNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPH--QVNVLATGG-GREDGCIKIWNVQKGT---C-----IH 228 (335)
Q Consensus 164 ~----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~-g~~d~~i~i~d~~~~~---~-----~~ 228 (335)
. .|.+.+|..+. +.-+.+++|......+.+..+ ...+++.+. +...+++.+.++.... . ..
T Consensus 170 ~~~~i~G~mQLYS~er----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~v 245 (327)
T d1utca2 170 QQNRVVGAMQLYSVDR----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAV 245 (327)
T ss_dssp ETTEEEEEEEEEETTT----TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEE
T ss_pred CCCceeEEEEEEEecc----CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeE
Confidence 2 36788998764 345566677655444443321 123444332 1234788888886521 1 11
Q ss_pred Eee--c---CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCC
Q 019847 229 GID--A---KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADE 303 (335)
Q Consensus 229 ~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 303 (335)
.+. . ..-..++..++....+..- +.-|.+++||+.++.++..-+-....|..-+-..+..=++....+|
T Consensus 246 di~fppea~~DFPvamqvs~kygiiyvi------TK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~G 319 (327)
T d1utca2 246 DVFFPPEAQNDFPVAMQISEKHDVVFLI------TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG 319 (327)
T ss_dssp ECCCCTTCTTCCEEEEEEETTTTEEEEE------ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTS
T ss_pred EEECCccccCCcEEEEEeeccCCEEEEE------ecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCC
Confidence 111 1 1235667777777766654 6789999999999999888776666666555555544555666777
Q ss_pred cEEE
Q 019847 304 TIRF 307 (335)
Q Consensus 304 ~v~i 307 (335)
.|.-
T Consensus 320 qVl~ 323 (327)
T d1utca2 320 QVLS 323 (327)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 7653
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.79 E-value=5.6e-06 Score=64.50 Aligned_cols=197 Identities=10% Similarity=0.019 Sum_probs=128.9
Q ss_pred EeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceee
Q 019847 105 TSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHR 184 (335)
Q Consensus 105 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 184 (335)
...|.+.++.+..+--..+.|..||..++... .+ .....+.++++.++++++++ +.+ .+..+|..+.+. ..+..
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~--~~-~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~-~~l~~ 95 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT--VH-ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVL-TLHAE 95 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE--EE-ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCE-EEEEC
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE--EE-ECCCCcEEEEEecCCCEEEE-EeC-ccEEeeccccee-eEEee
Confidence 34577756666666667788999998765432 22 24567889999999876665 444 588999776432 22222
Q ss_pred ccCC--CCCeeEEEecCCCCcEEEEec-CCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCC
Q 019847 185 FTDH--CGGVKALAWSPHQVNVLATGG-GREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGN 261 (335)
Q Consensus 185 ~~~~--~~~v~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (335)
.... ...++.+.+.|+|...+.+.. ....+.-.+|.+..++.......-.....+.|+++++.+.... +..+
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~d-----t~~~ 170 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVD-----TKVN 170 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEE-----TTTC
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEee-----cccc
Confidence 2211 224788999999975555432 0012345677777777665555555678899999999776542 5678
Q ss_pred eEEEEECCCCc--------eeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCC
Q 019847 262 KLCLWKYPNMT--------KVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFG 312 (335)
Q Consensus 262 ~i~i~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 312 (335)
.|..|++.... .........+....+++..+|++.++.-..+.|..|+.+.
T Consensus 171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G 229 (295)
T d2ghsa1 171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG 229 (295)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCC
Confidence 89998874321 1112233445678899999998887776778899999654
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.73 E-value=1.9e-05 Score=60.25 Aligned_cols=251 Identities=8% Similarity=-0.023 Sum_probs=154.9
Q ss_pred eEEEecCCeEEEEEecCCceee---EEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCceeEeeeccccccee
Q 019847 29 VLAVALGPVLFLWKWENGKVKK---LLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETSKLVRNLEGHHRRVA 104 (335)
Q Consensus 29 ~~~~~~~~~i~vw~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~ 104 (335)
+|..+..+.|+-.+++...... ...+..+...+..++|.+..+.|.-.. .++.|+..++........+......+.
T Consensus 3 fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~ 82 (263)
T d1npea_ 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE 82 (263)
T ss_dssp EEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE
T ss_pred EEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccccc
Confidence 4556666788888886544221 111222334577899998877776664 567898888876655444443445678
Q ss_pred EeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC-Ce--EEEEEccCCCcccc
Q 019847 105 TSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD-NV--VRIWERSKMSSSKS 181 (335)
Q Consensus 105 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~--i~iwd~~~~~~~~~ 181 (335)
.+++....+++.++-...+.|.+.++..... .............+++.|...++...... +. |..-++.... ...
T Consensus 83 ~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-~~~ 160 (263)
T d1npea_ 83 GIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRI 160 (263)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEE
T ss_pred EEEEeccCCeEEEeccCCCEEEEEecCCceE-EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC-cee
Confidence 8888764555556666778999999875443 22333344678999999977766655432 23 4444544321 111
Q ss_pred eeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCC
Q 019847 182 LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGN 261 (335)
Q Consensus 182 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (335)
+ ....-.....+++.+.++.++.+.. ..+.|...|+........+........+++. +..+... -...+
T Consensus 161 i--~~~~~~~P~glaiD~~~~~lYw~d~--~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwt-----d~~~~ 229 (263)
T d1npea_ 161 L--AQDNLGLPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYT-----DWKTN 229 (263)
T ss_dssp E--ECTTCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEE-----ETTTT
T ss_pred e--eeecccccceEEEeecCcEEEEEeC--CCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEE-----ECCCC
Confidence 1 2223345689999988888878765 6789999998765544444443445567765 3334322 24578
Q ss_pred eEEEEECCCCceeecccCC-CCceeEeEEcCC
Q 019847 262 KLCLWKYPNMTKVGELQSS-NSRILDLSQSPD 292 (335)
Q Consensus 262 ~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~ 292 (335)
.|...|..+++.+..+..+ ......+++.++
T Consensus 230 ~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~ 261 (263)
T d1npea_ 230 SVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (263)
T ss_dssp EEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred EEEEEECCCCccceEECCCCCCCcceEEEeCC
Confidence 8999998888877655432 234455555443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=0.00013 Score=55.56 Aligned_cols=235 Identities=6% Similarity=-0.045 Sum_probs=143.8
Q ss_pred eEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEE-CCCcEEEEeCCCce----eEeeecccccce
Q 019847 29 VLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGY-MDSKLQLWDAETSK----LVRNLEGHHRRV 103 (335)
Q Consensus 29 ~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~----~~~~~~~~~~~v 103 (335)
++..+....|+-.++++.+..... + ....+..++|++..+.|.-.. .++.|.-.++.... ....+......+
T Consensus 3 fLl~s~~~~I~~~~l~~~~~~~~~--~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p 79 (266)
T d1ijqa1 3 YLFFTNRHEVRKMTLDRSEYTSLI--P-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (266)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEE--C-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEECCCeEEEEECCCCcceeee--C-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCc
Confidence 344555667999999887654443 2 345678999999888777664 45667766664321 112222233456
Q ss_pred eEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEe--CCCeEEEEEccCCCcccc
Q 019847 104 ATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGG--DDNVVRIWERSKMSSSKS 181 (335)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~ 181 (335)
..+++.+..+++.++-...+.|.+.++..... .............+++.|...+|.... ..+.|...++.... .
T Consensus 80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~-~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~-- 155 (266)
T d1ijqa1 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-I-- 155 (266)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-E--
T ss_pred ceEEEeeccceEEEEecCCCEEEeEecCCceE-EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-e--
Confidence 67888764666666667778999999975443 344445556789999999666665554 33456666655321 1
Q ss_pred eeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecC---CcEeEEEeCCCCceeeeeeeeeeec
Q 019847 182 LHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAK---AQICGLEWNRHHKEILSGHGFSASG 258 (335)
Q Consensus 182 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (335)
.......-.....+++.+.+..++.+.. ..+.|...|+............ .....+++.. ..+... -.
T Consensus 156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~--~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~--~~ly~t-----d~ 226 (266)
T d1ijqa1 156 YSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWT-----DI 226 (266)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEE-----ET
T ss_pred ecccccccceeeEEEeeccccEEEEecC--CcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC--CEEEEE-----EC
Confidence 1112223355789999998888888865 6789999998755443333222 2345566552 333322 24
Q ss_pred CCCeEEEEECCCCceeecccC
Q 019847 259 DGNKLCLWKYPNMTKVGELQS 279 (335)
Q Consensus 259 ~~~~i~i~d~~~~~~~~~~~~ 279 (335)
.++.|...+..+++....+..
T Consensus 227 ~~~~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 227 INEAIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp TTTEEEEEETTTCCCCEEEEC
T ss_pred CCCeEEEEECCCCcceEEEEc
Confidence 567777777766665544443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.45 E-value=0.0001 Score=58.78 Aligned_cols=227 Identities=10% Similarity=0.065 Sum_probs=133.6
Q ss_pred EEEEcC---CCCEEEEEE-CCCcEEEEeCCCceeEeeecc-cccceeEeeecC-CCCCEEEEeeCC--------------
Q 019847 63 SVSWSH---DAKTLAVGY-MDSKLQLWDAETSKLVRNLEG-HHRRVATSSWNH-WNGHILTSGSKD-------------- 122 (335)
Q Consensus 63 ~~~~~~---~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~l~~~~~d-------------- 122 (335)
.+++.. ||++|++.. .++.|.+.|+++.+..+.+.. ....+..+...+ .+..+++..+..
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 444543 788988876 678999999999987664432 334455555433 145566665553
Q ss_pred ----CcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCC---------------eEEEEE-----------
Q 019847 123 ----KSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDN---------------VVRIWE----------- 172 (335)
Q Consensus 123 ----g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------------~i~iwd----------- 172 (335)
+.+.++|..+.+...+... .+....+.++++|+++++.+.+. .+.+++
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V--~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G 246 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLV--SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 246 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred hhcceEEEEEecCCceEEEEeee--CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence 2356778876555444433 33566789999999999877431 233343
Q ss_pred ------------ccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCc------------eEE
Q 019847 173 ------------RSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGT------------CIH 228 (335)
Q Consensus 173 ------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~------------~~~ 228 (335)
.+.......+..+. -......+..+|||+++++++. .+.++.++|+++-. ...
T Consensus 247 k~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGK--Ls~tVSViD~~Ki~~~~~~~~~~~~~~~~ 323 (459)
T d1fwxa2 247 DYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGK--LSPTVTVLDVTRFDAVFYENADPRSAVVA 323 (459)
T ss_dssp CSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECT--TSSBEEEEEGGGHHHHHHSCC-GGGGEEE
T ss_pred CcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCC--cCCcEEEEEehhhhhhhcccCCccccEEe
Confidence 22211111111111 1223456899999999999876 99999999996421 112
Q ss_pred EeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCC----------ceeecccCCCC-----ceeEeEEcCCC
Q 019847 229 GIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNM----------TKVGELQSSNS-----RILDLSQSPDG 293 (335)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~----------~~~~~~~~~~~-----~i~~~~~~~~~ 293 (335)
..+..-....-+|+..|....+- --|..|.-|++... ..+..+.-|-. ....-...|+|
T Consensus 324 e~elglgPLht~fd~~g~aytsl------fids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dg 397 (459)
T d1fwxa2 324 EPELGLGPLHTAFDGRGNAYTSL------FLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN 397 (459)
T ss_dssp CCBCCSCEEEEEECTTSEEEEEE------TTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS
T ss_pred ecccCcCccccccCCCceEEEEe------eccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCC
Confidence 22233345667888877433222 34999999998432 23333332221 11111346788
Q ss_pred CEEEEEe
Q 019847 294 LTVATAG 300 (335)
Q Consensus 294 ~~l~~~~ 300 (335)
++|++..
T Consensus 398 k~l~~~n 404 (459)
T d1fwxa2 398 DWLVCLS 404 (459)
T ss_dssp SEEEEEE
T ss_pred CEEEEec
Confidence 8888875
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.28 E-value=0.00037 Score=52.84 Aligned_cols=233 Identities=9% Similarity=0.037 Sum_probs=140.0
Q ss_pred CEEEEEECCCcEEEEeCCCcee-----EeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCC
Q 019847 71 KTLAVGYMDSKLQLWDAETSKL-----VRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSG 145 (335)
Q Consensus 71 ~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 145 (335)
.+|+.+. .+.|+-.+++.... ...+..+...+..++|.+.++.++.+-..++.|+..++..... .........
T Consensus 2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-~~v~~~~~~ 79 (263)
T d1npea_ 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLG 79 (263)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCC
T ss_pred CEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-EEEEEeccc
Confidence 3455443 34677777654321 1223334456788999884555555556778899888875443 333333445
Q ss_pred CEEEEEeecCCCEEE-EEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC
Q 019847 146 EVCGLKWSNEGNLLA-SGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG 224 (335)
Q Consensus 146 ~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 224 (335)
.+..+++..-++.|. +-...+.|.+.++..... ..+ .......+..++++|....++.+..+.....|.--++...
T Consensus 80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-~~l--~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~ 156 (263)
T d1npea_ 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVL--FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT 156 (263)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE--ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred cccEEEEeccCCeEEEeccCCCEEEEEecCCceE-EEE--ecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC
Confidence 788999987555555 445567999999875322 122 2223356889999998888887754323344655566544
Q ss_pred ceEEEee-cCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCC
Q 019847 225 TCIHGID-AKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADE 303 (335)
Q Consensus 225 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 303 (335)
....... .-.....+++++.++.+.... ...+.|...++........+.+... ..+|++. ++.+..+-...+
T Consensus 157 ~~~~i~~~~~~~P~glaiD~~~~~lYw~d-----~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~-~~~lYwtd~~~~ 229 (263)
T d1npea_ 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVD-----AGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY-GKNLYYTDWKTN 229 (263)
T ss_dssp CCEEEECTTCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE-TTEEEEEETTTT
T ss_pred CceeeeeecccccceEEEeecCcEEEEEe-----CCCCEEEEEECCCCCeEEEECCCCC-cEEEEEE-CCEEEEEECCCC
Confidence 3333222 224567899998888775442 4568899999876554333333332 4577775 333334444567
Q ss_pred cEEEEecCCCCC
Q 019847 304 TIRFWEAFGPSG 315 (335)
Q Consensus 304 ~v~iw~~~~~~~ 315 (335)
.|...+..+++.
T Consensus 230 ~I~~~~~~~g~~ 241 (263)
T d1npea_ 230 SVIAMDLAISKE 241 (263)
T ss_dssp EEEEEETTTTEE
T ss_pred EEEEEECCCCcc
Confidence 777777776543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.26 E-value=0.00092 Score=56.73 Aligned_cols=271 Identities=12% Similarity=0.083 Sum_probs=147.7
Q ss_pred eeeecCCceEEEecCCeEEEEEecCCceeeEEeecCC--CCCceEEEEcCCCCEEEEEE------CCCcEEEEeCCCcee
Q 019847 21 VIDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGE--DDYPTSVSWSHDAKTLAVGY------MDSKLQLWDAETSKL 92 (335)
Q Consensus 21 ~~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~------~dg~i~iw~~~~~~~ 92 (335)
.+++.+++++.++.++.+.-.|.++++......+... ...++.--.-.++ .++.+. .+|.|+-+|+.+|+.
T Consensus 110 g~a~~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~ 188 (571)
T d2ad6a1 110 GLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGEL 188 (571)
T ss_dssp CCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred cceeeCCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcE
Confidence 3566678899999999999999999997665544221 1111111011133 455554 367899999999998
Q ss_pred Eeeecccc-------------------------------------cce-eEeeecCCCCCEEEEeeC-------------
Q 019847 93 VRNLEGHH-------------------------------------RRV-ATSSWNHWNGHILTSGSK------------- 121 (335)
Q Consensus 93 ~~~~~~~~-------------------------------------~~v-~~~~~~~~~~~~l~~~~~------------- 121 (335)
+..+.... ..+ ....+.+ ...+++.+..
T Consensus 189 ~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~-~~g~~y~~tg~~~p~~~~~r~g~ 267 (571)
T d2ad6a1 189 KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGD 267 (571)
T ss_dssp EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSC
T ss_pred EEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccch-hcCeeeeecccccCccccccccc
Confidence 87654211 011 1234445 4445554433
Q ss_pred ---CCcEEEEecccCCeeeEEeecCC--------CCEEEEEeecCCC---EEEEEeCCCeEEEEEccCCCcccceee---
Q 019847 122 ---DKSIINHDVRVSNNVTSCIKAHS--------GEVCGLKWSNEGN---LLASGGDDNVVRIWERSKMSSSKSLHR--- 184 (335)
Q Consensus 122 ---dg~i~~~d~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~--- 184 (335)
...+...|+++++..-.....|. ..........+++ .++.++.+|.++++|.++++.......
T Consensus 268 n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~ 347 (571)
T d2ad6a1 268 NKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA 347 (571)
T ss_dssp CTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred cccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCc
Confidence 24567778887765433222111 1111122222343 567788899999998766532100000
Q ss_pred -------------------------------ccCCCCCe--eEEEecCCCCcEEEEec----------------------
Q 019847 185 -------------------------------FTDHCGGV--KALAWSPHQVNVLATGG---------------------- 209 (335)
Q Consensus 185 -------------------------------~~~~~~~v--~~~~~~~~~~~~~~~~~---------------------- 209 (335)
.....+.. ...+++|+...+++-..
T Consensus 348 ~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (571)
T d2ad6a1 348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA 427 (571)
T ss_dssp CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred ccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCcccccc
Confidence 00000000 12456665543333210
Q ss_pred ------------CCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecc
Q 019847 210 ------------GREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL 277 (335)
Q Consensus 210 ------------g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~ 277 (335)
....|.|.-+|+.+++.+-+.+...+..+-.....+..++. ++.|+.++-+|.++++.+-++
T Consensus 428 ~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~------G~~dg~l~A~Da~tGe~lW~~ 501 (571)
T d2ad6a1 428 TLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWY------ATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp EEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE------ECTTSEEEEEETTTCCEEEEE
T ss_pred ceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEE------ECCCCeEEEEECCCCcEEEEE
Confidence 00125788889999998877765543322222223334433 478999999999999999877
Q ss_pred cCCCC-ceeEeEEcCCCC-EEEEE
Q 019847 278 QSSNS-RILDLSQSPDGL-TVATA 299 (335)
Q Consensus 278 ~~~~~-~i~~~~~~~~~~-~l~~~ 299 (335)
+-... .-.-+.+..||+ |+++.
T Consensus 502 ~l~~~~~a~P~ty~~dGkqYi~v~ 525 (571)
T d2ad6a1 502 KMPSGGIGSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp ECSSCCCSCCEEEEETTEEEEEEE
T ss_pred ECCCCceecceEEEECCEEEEEEE
Confidence 53322 112255566774 55443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.12 E-value=0.0012 Score=52.57 Aligned_cols=230 Identities=12% Similarity=0.107 Sum_probs=144.2
Q ss_pred cccceeeeecC----CceEEEe--cCCeEEEEEecCCceeeEEeecCCCCCceEEEEc--CCCCEEEEEECC--------
Q 019847 16 DYYSKVIDWGR----NNVLAVA--LGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWS--HDAKTLAVGYMD-------- 79 (335)
Q Consensus 16 ~~~~~~~~~~~----~~~~~~~--~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d-------- 79 (335)
|..-..+++.+ ++.+.+. .++.|.+.|+++.+..++..++. ...+..++.. |+..|++.++.+
T Consensus 84 D~HHP~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn-~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg 162 (459)
T d1fwxa2 84 DLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDG 162 (459)
T ss_dssp CBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred CcCCCcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCC-CCCCceeecccCCCeEEEEccCccccccCCCC
Confidence 44455677766 3444443 57899999999999888887754 3445666665 456688877653
Q ss_pred ----------CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCC---------------cEEEEec----
Q 019847 80 ----------SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDK---------------SIINHDV---- 130 (335)
Q Consensus 80 ----------g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------------~i~~~d~---- 130 (335)
+.+.+.|.++.+...++.. ......+.+++ +++++++.+.+. .+.++++
T Consensus 163 ~~l~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie 240 (459)
T d1fwxa2 163 TNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 240 (459)
T ss_dssp SSTTCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred ccccchhhcceEEEEEecCCceEEEEeee-CCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhH
Confidence 2367889998888777663 34677889999 888888776431 2333433
Q ss_pred -------------------ccC--CeeeEEeecCCCCEEEEEeecCCCEEEEEe-CCCeEEEEEccCCCc--------cc
Q 019847 131 -------------------RVS--NNVTSCIKAHSGEVCGLKWSNEGNLLASGG-DDNVVRIWERSKMSS--------SK 180 (335)
Q Consensus 131 -------------------~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--------~~ 180 (335)
+.. ......+ .-......+.++|||+++++++ .+.++.++|+++... ..
T Consensus 241 ~av~~Gk~~eingV~VVD~~~~~~~~v~~yI-PVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~ 319 (459)
T d1fwxa2 241 KAIAAGDYQELNGVKVVDGRKEASSLFTRYI-PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 319 (459)
T ss_dssp HHHHHTCSEEETTEEEEECSGG--CSSEEEE-EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGG
T ss_pred HhhhcCCcEEeCCceeecccccCCcceeEEE-ecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccc
Confidence 211 1111111 1122345688999999988776 578999999864221 11
Q ss_pred ceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCC----------ceEEEeecCCcEeEE------EeCCC
Q 019847 181 SLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKG----------TCIHGIDAKAQICGL------EWNRH 244 (335)
Q Consensus 181 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~----------~~~~~~~~~~~~~~~------~~~~~ 244 (335)
.+.......-....-+|+..| +..++-- .|..|.-|++... ..+..+..+..+-.+ ...|+
T Consensus 320 ~~~~e~elglgPLht~fd~~g-~aytslf--ids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~d 396 (459)
T d1fwxa2 320 AVVAEPELGLGPLHTAFDGRG-NAYTSLF--LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDAT 396 (459)
T ss_dssp GEEECCBCCSCEEEEEECTTS-EEEEEET--TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCC
T ss_pred cEEeecccCcCccccccCCCc-eEEEEee--ccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCC
Confidence 111111122334566788877 5666655 7999999998532 455666665554444 35688
Q ss_pred Cceeeeee
Q 019847 245 HKEILSGH 252 (335)
Q Consensus 245 ~~~~~~~~ 252 (335)
|+++++.+
T Consensus 397 gk~l~~~n 404 (459)
T d1fwxa2 397 NDWLVCLS 404 (459)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEec
Confidence 88888764
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.10 E-value=0.0012 Score=56.00 Aligned_cols=283 Identities=9% Similarity=0.044 Sum_probs=151.8
Q ss_pred CceEEEec-CCeEEEEEe-cCCceeeEEeecCCCC---------CceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEee
Q 019847 27 NNVLAVAL-GPVLFLWKW-ENGKVKKLLQVPGEDD---------YPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRN 95 (335)
Q Consensus 27 ~~~~~~~~-~~~i~vw~~-~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 95 (335)
+.+++++. ++.|...|. ++|+.+-.+..+.... .-..+++. +..++.++.||.+.-.|.++|+.+..
T Consensus 63 g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w~ 140 (571)
T d2ad6a1 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhcc
Confidence 45555554 678888887 4688755443221110 00223442 44688888999999999999998766
Q ss_pred ecccc----cceeEeeecCCCCCEEEEee------CCCcEEEEecccCCeeeEEeecC----------------------
Q 019847 96 LEGHH----RRVATSSWNHWNGHILTSGS------KDKSIINHDVRVSNNVTSCIKAH---------------------- 143 (335)
Q Consensus 96 ~~~~~----~~v~~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~---------------------- 143 (335)
..... ..++.--... ++ .++.+. .+|.|+-+|+++++.+-+.....
T Consensus 141 ~~~~~~~~~~~~t~~p~v~-~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 218 (571)
T d2ad6a1 141 VEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred ccccccccccceeecCeEe-CC-eEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccc
Confidence 54221 1111111111 33 344444 36789999999888655432110
Q ss_pred --------------CCCE-EEEEeecCCCEEEEEeCC----------------CeEEEEEccCCCcccceeeccCC----
Q 019847 144 --------------SGEV-CGLKWSNEGNLLASGGDD----------------NVVRIWERSKMSSSKSLHRFTDH---- 188 (335)
Q Consensus 144 --------------~~~i-~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~---- 188 (335)
...+ ...++.++...+..+..+ ..+.-.|+++++..-..+.. .|
T Consensus 219 ~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~-~~D~Wd 297 (571)
T d2ad6a1 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKT-PHDEWD 297 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESS-TTCSSC
T ss_pred ccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheeccccc-Cccccc
Confidence 1111 224555666666555432 34556666654322111111 01
Q ss_pred ---CCCeeEEEecCCCC--cEEEEecCCCCCeEEEEECCCCceEEEeecCC--------------c--------------
Q 019847 189 ---CGGVKALAWSPHQV--NVLATGGGREDGCIKIWNVQKGTCIHGIDAKA--------------Q-------------- 235 (335)
Q Consensus 189 ---~~~v~~~~~~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~--------------~-------------- 235 (335)
..+........++. ..++..+ .+|.++++|..+|+.+...+... +
T Consensus 298 ~D~~~~~~l~~~~~~g~~~~~v~~~~--k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g 375 (571)
T d2ad6a1 298 FAGVNQMVLTDQPVNGKMTPLLSHID--RNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKG 375 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCE
T ss_pred cccccccceeeeeccCccccceeecc--ccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCc
Confidence 11111122222332 2444444 89999999999999875432110 0
Q ss_pred ------------EeEEEeCCCCceeeeeeeee-------------------------------eecCCCeEEEEECCCCc
Q 019847 236 ------------ICGLEWNRHHKEILSGHGFS-------------------------------ASGDGNKLCLWKYPNMT 272 (335)
Q Consensus 236 ------------~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~i~i~d~~~~~ 272 (335)
-...+++|+...++...... .....|.+.-+|+.+++
T Consensus 376 ~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~ 455 (571)
T d2ad6a1 376 TNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGK 455 (571)
T ss_dssp EEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCC
T ss_pred eEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCc
Confidence 01245666666555432100 01123578888988888
Q ss_pred eeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 273 KVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
.+-+...... ..+-..+-.+.++++|+.||.++.+|.++++..-
T Consensus 456 ~~W~~~~~~~-~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW 499 (571)
T d2ad6a1 456 AKWTKWEKFA-AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp EEEEEEESSC-CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred eeeEcCCCCC-CCcceeEecCCEEEEECCCCeEEEEECCCCcEEE
Confidence 8765532211 1111122235578889999999999999877653
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.09 E-value=0.00079 Score=54.03 Aligned_cols=263 Identities=12% Similarity=0.046 Sum_probs=130.9
Q ss_pred eEEEEEecCCceeeEEee-cCCCCCceEEEEcCCCCEEEEEECC-CcEEEEeCCCceeEeeeccc-ccceeEeeecCCCC
Q 019847 37 VLFLWKWENGKVKKLLQV-PGEDDYPTSVSWSHDAKTLAVGYMD-SKLQLWDAETSKLVRNLEGH-HRRVATSSWNHWNG 113 (335)
Q Consensus 37 ~i~vw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~ 113 (335)
.+.+||..+++....... ..|.......++.+++++++.|+.+ ..+.+||..+......-... ...-...+..+ ++
T Consensus 53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG 131 (387)
T d1k3ia3 53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DG 131 (387)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TS
T ss_pred EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CC
Confidence 377999998876543332 2333444567889999999988654 58999999876654322111 12223445555 88
Q ss_pred CEEEEeeCC------CcEEEEecccCCeeeEE--------eecCC-----CCEEEEEeecCCCEEEEEeCCCeEEEEEcc
Q 019847 114 HILTSGSKD------KSIINHDVRVSNNVTSC--------IKAHS-----GEVCGLKWSNEGNLLASGGDDNVVRIWERS 174 (335)
Q Consensus 114 ~~l~~~~~d------g~i~~~d~~~~~~~~~~--------~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 174 (335)
++++.|+.+ ..+.+||..+....... ...+. ..-..+...++++.+..+..++.+.++|..
T Consensus 132 ~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~ 211 (387)
T d1k3ia3 132 RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG 211 (387)
T ss_dssp CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST
T ss_pred ceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcc
Confidence 888888753 36889998765421100 00000 000112223467777777777777777755
Q ss_pred CCCcccceeeccC----CCC--CeeEEEecCCCCcEEEEecCCC------CCeEEEEECCCC---ceEEE-ee---cCCc
Q 019847 175 KMSSSKSLHRFTD----HCG--GVKALAWSPHQVNVLATGGGRE------DGCIKIWNVQKG---TCIHG-ID---AKAQ 235 (335)
Q Consensus 175 ~~~~~~~~~~~~~----~~~--~v~~~~~~~~~~~~~~~~~g~~------d~~i~i~d~~~~---~~~~~-~~---~~~~ 235 (335)
...- ........ +.. .-.++.+......+++.++... .....+.++... ..... .. ....
T Consensus 212 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~ 290 (387)
T d1k3ia3 212 SGDV-KSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFART 290 (387)
T ss_dssp TCEE-EEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCB
T ss_pred cCcE-eeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccc
Confidence 4321 11111000 111 1123333333335666653111 112333333221 11111 11 1112
Q ss_pred EeEEEeCCCCceeeeeeeeeee-----cCCCeEEEEECCCCce--eecccCCCCceeEeEEcCCCCEEEEEeC
Q 019847 236 ICGLEWNRHHKEILSGHGFSAS-----GDGNKLCLWKYPNMTK--VGELQSSNSRILDLSQSPDGLTVATAGA 301 (335)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 301 (335)
-.+....++++.++.|...... .....+.+||..+.+- +..+......-....+.+||+.|+.|+.
T Consensus 291 ~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 291 FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 3355666888887776321100 0112578899766542 2222111111122345789999999874
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=0.0012 Score=50.07 Aligned_cols=244 Identities=11% Similarity=-0.025 Sum_probs=143.6
Q ss_pred EEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCC---eeeEEeecCCCCEE
Q 019847 72 TLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSN---NVTSCIKAHSGEVC 148 (335)
Q Consensus 72 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~i~ 148 (335)
+|+.+.. ..|+-.++.+.+....+. ....+..+.|.+..+.+..+-...+.|.-.++.... ............+.
T Consensus 3 fLl~s~~-~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~ 80 (266)
T d1ijqa1 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (266)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence 4455443 358888988765444333 455677899988444455554566777777665322 11222233335567
Q ss_pred EEEeecCCCEEEEE-eCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceE
Q 019847 149 GLKWSNEGNLLASG-GDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCI 227 (335)
Q Consensus 149 ~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~ 227 (335)
.+++.+.++.|..+ ...+.|.+.++..... .............++++|....++.+..+ ..+.|.-.++......
T Consensus 81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~---~~~~~~~~~~P~~l~vd~~~g~ly~~~~~-~~~~I~r~~~dGs~~~ 156 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKR---KTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIY 156 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSE---EEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCCEE
T ss_pred eEEEeeccceEEEEecCCCEEEeEecCCceE---EEEEcCCCCCcceEEEEcccCeEEEeccC-CCcceeEeccCCCcee
Confidence 78888755545444 4567899999875322 22223344567899999977777776532 4567888887654443
Q ss_pred EEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecc--cCCCCceeEeEEcCCCCEEEEEeCCCc
Q 019847 228 HGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGEL--QSSNSRILDLSQSPDGLTVATAGADET 304 (335)
Q Consensus 228 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~ 304 (335)
..... -.....+++++.++.+.... ...+.|...++......... ........++++.. +.+..+-..++.
T Consensus 157 ~l~~~~~~~p~gl~iD~~~~~lYw~d-----~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~-~~ly~td~~~~~ 230 (266)
T d1ijqa1 157 SLVTENIQWPNGITLDLLSGRLYWVD-----SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEA 230 (266)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTE
T ss_pred cccccccceeeEEEeeccccEEEEec-----CCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC-CEEEEEECCCCe
Confidence 33322 24578899999888776542 55789999998665433222 22223456777763 334444446677
Q ss_pred EEEEecCCCCCCCCccccccccc
Q 019847 305 IRFWEAFGPSGDEDSVSHLAGLV 327 (335)
Q Consensus 305 v~iw~~~~~~~~~~~~~~~~~i~ 327 (335)
|...+..+++.............
T Consensus 231 I~~~~~~~g~~~~~~~~~~~~p~ 253 (266)
T d1ijqa1 231 IFSANRLTGSDVNLLAENLLSPE 253 (266)
T ss_dssp EEEEETTTCCCCEEEECSCSCCC
T ss_pred EEEEECCCCcceEEEEcCCCCce
Confidence 87777777665544433333333
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.95 E-value=0.004 Score=52.61 Aligned_cols=287 Identities=11% Similarity=0.081 Sum_probs=157.1
Q ss_pred eeecCCceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC--CCCEEEEEEC------CCcEEEEeCCCceeE
Q 019847 22 IDWGRNNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH--DAKTLAVGYM------DSKLQLWDAETSKLV 93 (335)
Q Consensus 22 ~~~~~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~------dg~i~iw~~~~~~~~ 93 (335)
++..++.++.+..++.+.-.|..+++.........+... ..+.-.| ....++.+.. .|.|.-+|.++|+.+
T Consensus 113 ~~~~~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~-~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~ 191 (560)
T d1kv9a2 113 VALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKP-YSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLA 191 (560)
T ss_dssp CEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSS-CBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred cceeCCeEEEEeCCCEEEEEECCCCcEEeccCccCcccc-eeeeeeeeeecCcccccccceeccccceEEEEECCCceEE
Confidence 344456788888999999999999998766554332221 1111112 1234444432 367999999999998
Q ss_pred eeecccc------------------------------cce-eEeeecCCCCCEEEEeeC-------------------CC
Q 019847 94 RNLEGHH------------------------------RRV-ATSSWNHWNGHILTSGSK-------------------DK 123 (335)
Q Consensus 94 ~~~~~~~------------------------------~~v-~~~~~~~~~~~~l~~~~~-------------------dg 123 (335)
..+..-. ..+ ..+.+.+ ...+++.+.. ..
T Consensus 192 W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~-~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~ 270 (560)
T d1kv9a2 192 WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLS 270 (560)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred eeeeeccccccCCccccccccccccccccccccccCCCCccccccccc-ccCeeeecCCCCcccccccccccCCccccce
Confidence 8764210 111 1133444 4444443321 23
Q ss_pred cEEEEecccCCeeeEEeec-CC-------CCEEEEEeecCC---CEEEEEeCCCeEEEEEccCCCcccceeec-------
Q 019847 124 SIINHDVRVSNNVTSCIKA-HS-------GEVCGLKWSNEG---NLLASGGDDNVVRIWERSKMSSSKSLHRF------- 185 (335)
Q Consensus 124 ~i~~~d~~~~~~~~~~~~~-~~-------~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------- 185 (335)
.|.-.|+++++..-..... |. ....-.....++ ..++.+..+|.+.++|..+++........
T Consensus 271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~ 350 (560)
T d1kv9a2 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK 350 (560)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence 5666777766643322111 11 111112222233 36677888999999997665421111000
Q ss_pred ------------------------cCCCCC--eeEEEecCCCCcEEEEec------------------------------
Q 019847 186 ------------------------TDHCGG--VKALAWSPHQVNVLATGG------------------------------ 209 (335)
Q Consensus 186 ------------------------~~~~~~--v~~~~~~~~~~~~~~~~~------------------------------ 209 (335)
.+..+. -...+++|+...+++...
T Consensus 351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (560)
T d1kv9a2 351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD 430 (560)
T ss_dssp ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred cChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccC
Confidence 000000 013455666544443321
Q ss_pred ---CCCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCc-ee
Q 019847 210 ---GREDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSR-IL 285 (335)
Q Consensus 210 ---g~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-i~ 285 (335)
+...|.+.-+|+.+++.+-.++...+...-...-.+..++. ++.||.++-+|.++++.+-+++..... -.
T Consensus 431 ~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~------G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~ 504 (560)
T d1kv9a2 431 VPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ------GTAAGQMHAYSADKGEALWQFEAQSGIVAA 504 (560)
T ss_dssp CCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE------ECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred CCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEE------ECCCCcEEEEECCCCcEeEEEECCCCcccc
Confidence 00136788999999999888876655433222333444443 477999999999999999887643321 11
Q ss_pred EeEEcCCCC-EEEEEeCC--------------------CcEEEEecCCCCCC
Q 019847 286 DLSQSPDGL-TVATAGAD--------------------ETIRFWEAFGPSGD 316 (335)
Q Consensus 286 ~~~~~~~~~-~l~~~~~d--------------------g~v~iw~~~~~~~~ 316 (335)
-+.+..+|+ ||++.... +.|.+|.+....+.
T Consensus 505 P~ty~~dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~F~L~g~~~~ 556 (560)
T d1kv9a2 505 PMTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGKAQL 556 (560)
T ss_dssp CEEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCCCCC
T ss_pred CEEEEECCEEEEEEEeCCCcccccccccccccccCCCCCEEEEEEeCCCCCC
Confidence 245556774 55543322 35788888765443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.86 E-value=0.0057 Score=51.77 Aligned_cols=96 Identities=14% Similarity=0.156 Sum_probs=60.1
Q ss_pred CeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCce-eEeEEcCC
Q 019847 214 GCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRI-LDLSQSPD 292 (335)
Q Consensus 214 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i-~~~~~~~~ 292 (335)
|.+.-||+.+++.+-..+...+...-..+-.+..+++| +.|+.++.+|.++++.+-+++...+.. .-+.|..+
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G------~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~ 530 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQG------TADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVD 530 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE------CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEE------CCCCeEEEEECCCCcEeEEEECCCCccccCEEEEEC
Confidence 46888999999988887765543322223344444444 779999999999999998876432211 11455567
Q ss_pred CC-EEEEEeC----------------CCcEEEEecCCCCC
Q 019847 293 GL-TVATAGA----------------DETIRFWEAFGPSG 315 (335)
Q Consensus 293 ~~-~l~~~~~----------------dg~v~iw~~~~~~~ 315 (335)
|+ |++..+. .+.|.+|.+....+
T Consensus 531 GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l~g~~~ 570 (573)
T d1kb0a2 531 GRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKAR 570 (573)
T ss_dssp TEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBCC
T ss_pred CEEEEEEEeCCCcccccccccccCCCCCEEEEEEeCCcCC
Confidence 75 4443322 23577777766543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.85 E-value=0.006 Score=51.47 Aligned_cols=286 Identities=12% Similarity=0.026 Sum_probs=155.0
Q ss_pred CCceEEEecCCeEEEEEecCCceeeEEeecCCC-----C---C-ceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 26 RNNVLAVALGPVLFLWKWENGKVKKLLQVPGED-----D---Y-PTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 26 ~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~-----~---~-v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
++.+++++.++.|.-.|.++|+.+-.+...... . . -..++. .+..++.+..++.+.-.|..+|+.+...
T Consensus 66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~ 143 (560)
T d1kv9a2 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (560)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEecc
Confidence 356777888999999999999876544321100 0 0 011122 2456888889999999999999998876
Q ss_pred cccccce-eEeeecC-CCCCEEEEeeC------CCcEEEEecccCCeeeEEeecCC------------------------
Q 019847 97 EGHHRRV-ATSSWNH-WNGHILTSGSK------DKSIINHDVRVSNNVTSCIKAHS------------------------ 144 (335)
Q Consensus 97 ~~~~~~v-~~~~~~~-~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~------------------------ 144 (335)
....... ..+.-.| -....++.+.. .|.|.-+|.++++.+-+......
T Consensus 144 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (560)
T d1kv9a2 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (560)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred CccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccc
Confidence 5322111 1111010 01233444432 36799999998887554432110
Q ss_pred -----CCE-EEEEeecCCCEEEEEeCC-------------------CeEEEEEccCCCcccceeeccCCC-------CCe
Q 019847 145 -----GEV-CGLKWSNEGNLLASGGDD-------------------NVVRIWERSKMSSSKSLHRFTDHC-------GGV 192 (335)
Q Consensus 145 -----~~i-~~~~~~~~~~~l~~~~~d-------------------g~i~iwd~~~~~~~~~~~~~~~~~-------~~v 192 (335)
..+ ..+++.++..++..+..+ ..|.-.|+++++..-..+. ..|. ...
T Consensus 224 ~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~-~~~D~wd~d~~~~~ 302 (560)
T d1kv9a2 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV-TPGDSWDFTATQQI 302 (560)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES-STTCCSCCCCCSCE
T ss_pred cccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEec-ccccccccccccee
Confidence 111 124555666655543321 2345555555432111111 1111 111
Q ss_pred --eEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeecCC------------------------------------
Q 019847 193 --KALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDAKA------------------------------------ 234 (335)
Q Consensus 193 --~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~------------------------------------ 234 (335)
..+........+++... .+|.+.++|..+++++...+...
T Consensus 303 ~l~~~~~~g~~~~~v~~~~--k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg 380 (560)
T d1kv9a2 303 TLAELNIDGKPRKVLMQAP--KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGA 380 (560)
T ss_dssp EEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCS
T ss_pred eeeeeecCCceeeeeeecC--ccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccc
Confidence 12222222223455544 89999999999999876543211
Q ss_pred -cEeEEEeCCCCceeeeeeee------------------------------eeecCCCeEEEEECCCCceeecccCCCCc
Q 019847 235 -QICGLEWNRHHKEILSGHGF------------------------------SASGDGNKLCLWKYPNMTKVGELQSSNSR 283 (335)
Q Consensus 235 -~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 283 (335)
.-...+++|+...++....- ......|.+.-+|+.+++.+-+..... +
T Consensus 381 ~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~-~ 459 (560)
T d1kv9a2 381 HNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-H 459 (560)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-S
T ss_pred cccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCC-C
Confidence 01134556665555432110 001123678889999998876654221 1
Q ss_pred eeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 284 ILDLSQSPDGLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 284 i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
...-.+.-.+.++++|+.||.++.+|..+++..-
T Consensus 460 ~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW 493 (560)
T d1kv9a2 460 WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (560)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCceeEECCCEEEEECCCCcEEEEECCCCcEeE
Confidence 2222233345688889999999999999887653
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.70 E-value=0.011 Score=50.07 Aligned_cols=111 Identities=16% Similarity=0.018 Sum_probs=65.8
Q ss_pred CCceEEEecCCeEEEEEecCCceeeEEeecCC--------CCCc-eEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 26 RNNVLAVALGPVLFLWKWENGKVKKLLQVPGE--------DDYP-TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 26 ~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~--------~~~v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
++.+++++.++.|.-+|.++|+.+-.+..... ...+ ..+.+. ...++.++.|+.+.-.|.++|+.+...
T Consensus 77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~ 154 (573)
T d1kb0a2 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQ 154 (573)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceecc
Confidence 45677778889999999999987654432110 0011 122232 346777888999999999999988665
Q ss_pred ccccccee--EeeecC-CCCCEEEEeeC------CCcEEEEecccCCeeeE
Q 019847 97 EGHHRRVA--TSSWNH-WNGHILTSGSK------DKSIINHDVRVSNNVTS 138 (335)
Q Consensus 97 ~~~~~~v~--~~~~~~-~~~~~l~~~~~------dg~i~~~d~~~~~~~~~ 138 (335)
........ .+.-.| -.+..++.++. .|.|+.+|.++++.+-+
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~ 205 (573)
T d1kb0a2 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (573)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred cCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceee
Confidence 43211111 111000 02334454432 46799999998876544
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.58 E-value=0.01 Score=47.16 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=71.5
Q ss_pred CceEEEEcCCCCEEEEEECCC-----------cEEEEeCCCceeEee--e-cccccceeEeeecCCCCCEEEEeeCC-Cc
Q 019847 60 YPTSVSWSHDAKTLAVGYMDS-----------KLQLWDAETSKLVRN--L-EGHHRRVATSSWNHWNGHILTSGSKD-KS 124 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg-----------~i~iw~~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~~l~~~~~d-g~ 124 (335)
.+.......+|+.++.|+.+. .+.+||..+++.... . ..+........+.+ ++.+++.|+.+ ..
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~i~v~Gg~~~~~ 99 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKK 99 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTC
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec-CCcEEEeecCCCcc
Confidence 344444556788888877421 377999988764322 1 12222334556777 88999988765 58
Q ss_pred EEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCC------CeEEEEEccCC
Q 019847 125 IINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDD------NVVRIWERSKM 176 (335)
Q Consensus 125 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~ 176 (335)
+.+||..+..............-...+..+|+++++.|+.+ ..+.+||..+.
T Consensus 100 ~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~ 157 (387)
T d1k3ia3 100 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 157 (387)
T ss_dssp EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred eeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence 99999986553221111112222356667799999988753 35889997753
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.56 E-value=0.014 Score=47.45 Aligned_cols=251 Identities=10% Similarity=0.057 Sum_probs=131.7
Q ss_pred CceEEEEcCCCCEEEEEE-CC----CcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCC------------
Q 019847 60 YPTSVSWSHDAKTLAVGY-MD----SKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKD------------ 122 (335)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~-~d----g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------------ 122 (335)
.+...+++|+++++|.+- .. ..++++|+.+++.+...- .......+.|.+ ++..|+-...+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~~~ 203 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTETS 203 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECT-TSSEEEEEECCCCSSCCSSSCCC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcC-CCCEEEEEEeccccCcccccccc
Confidence 345678899999998653 22 379999999998765322 122235788998 66665543322
Q ss_pred ----CcEEEEecccCCee-eEEeecC--CCCEEEEEeecCCCEEEEEeC---CCe--EEEEEccCCCccc-----ceeec
Q 019847 123 ----KSIINHDVRVSNNV-TSCIKAH--SGEVCGLKWSNEGNLLASGGD---DNV--VRIWERSKMSSSK-----SLHRF 185 (335)
Q Consensus 123 ----g~i~~~d~~~~~~~-~~~~~~~--~~~i~~~~~~~~~~~l~~~~~---dg~--i~iwd~~~~~~~~-----~~~~~ 185 (335)
..+..+.+.+.... ...+... ...+..+..++++++++.... +.. +.+.|+....... .....
T Consensus 204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 283 (430)
T d1qfma1 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI 283 (430)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred cCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEee
Confidence 25777777654332 1222222 234667778899998875432 233 4444544322110 01111
Q ss_pred cCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce---EEEeecC-CcEeEEEeCCCCceeeeeeeeeeecCCC
Q 019847 186 TDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC---IHGIDAK-AQICGLEWNRHHKEILSGHGFSASGDGN 261 (335)
Q Consensus 186 ~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (335)
........-+. +.++..++.+.-+..++.|...++..... ...+..+ ..+..-.+...+.+++.... -..-.
T Consensus 284 ~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~---~~~~~ 359 (430)
T d1qfma1 284 DNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL---HDVKN 359 (430)
T ss_dssp CSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE---ETTEE
T ss_pred cccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEE---cCCEe
Confidence 22222222222 22333334343222456777777765432 1222222 23433333344444443311 12235
Q ss_pred eEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeC----CCcEEEEecCCCCCC
Q 019847 262 KLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGA----DETIRFWEAFGPSGD 316 (335)
Q Consensus 262 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~v~iw~~~~~~~~ 316 (335)
.|++++..++..........+.+..+...++...+...-. =.++.-+|+.+++..
T Consensus 360 ~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~ 418 (430)
T d1qfma1 360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELE 418 (430)
T ss_dssp EEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCC
T ss_pred EEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcc
Confidence 6889999888776555555555666655555544332222 256888888877654
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.52 E-value=0.02 Score=48.49 Aligned_cols=263 Identities=12% Similarity=0.079 Sum_probs=141.7
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcC--CCCEEEEEEC------CCcEEEEeCCCceeEeeeccc
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSH--DAKTLAVGYM------DSKLQLWDAETSKLVRNLEGH 99 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~ 99 (335)
.++.++.|+.|.-.|.++++....+........ ..+.-.| .+..+++|.. .|.|+-+|+++|+++..+...
T Consensus 123 ~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~-~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~ 201 (596)
T d1w6sa_ 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVG-STLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (596)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGT-CBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEEeCCCCeEeeccccCceeccccccccccc-cccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeecc
Confidence 477788899999999999998665543211111 0111112 2345666543 489999999999998775421
Q ss_pred c-------------------------------------c-ceeEeeecCCCCCEEEEeeC----------------CCcE
Q 019847 100 H-------------------------------------R-RVATSSWNHWNGHILTSGSK----------------DKSI 125 (335)
Q Consensus 100 ~-------------------------------------~-~v~~~~~~~~~~~~l~~~~~----------------dg~i 125 (335)
. . .-..+.+.+ ...+++.+.. ...+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~-~~~lvy~~tg~~~p~~~~~r~g~n~ys~si 280 (596)
T d1w6sa_ 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (596)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCccccccccccccccccccccccccccCCCCceecCCCcccccccccc-CCCeeecccccccccccccccccccccccc
Confidence 1 0 012234445 4455554432 2347
Q ss_pred EEEecccCCeeeEEeecCC--------CCEEEEEe-ecCC---CEEEEEeCCCeEEEEEccCCCccccee----------
Q 019847 126 INHDVRVSNNVTSCIKAHS--------GEVCGLKW-SNEG---NLLASGGDDNVVRIWERSKMSSSKSLH---------- 183 (335)
Q Consensus 126 ~~~d~~~~~~~~~~~~~~~--------~~i~~~~~-~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~---------- 183 (335)
...|+++++..-.....|. .....+.. ..++ +.++....+|.+.++|.++++......
T Consensus 281 vAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~ 360 (596)
T d1w6sa_ 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (596)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred cccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecccccccccccc
Confidence 7788887775443222221 11121221 1233 367778888999999976653211000
Q ss_pred ----------ec--------------cCCCC--CeeEEEecCCCCcEEEEec----------------------------
Q 019847 184 ----------RF--------------TDHCG--GVKALAWSPHQVNVLATGG---------------------------- 209 (335)
Q Consensus 184 ----------~~--------------~~~~~--~v~~~~~~~~~~~~~~~~~---------------------------- 209 (335)
.. .+..+ .-...+++|+...+++-..
T Consensus 361 ~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (596)
T d1w6sa_ 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (596)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred ccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccccccccccc
Confidence 00 00000 0012345555433322210
Q ss_pred ---C-----CCCCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCC
Q 019847 210 ---G-----REDGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSN 281 (335)
Q Consensus 210 ---g-----~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 281 (335)
+ ..-|.|.-||+.+++.+-......+...-..+..+..++. ++.||.++-+|.++++.+-+++...
T Consensus 441 ~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~------G~~Dg~l~A~Da~TGe~LW~~~~~~ 514 (596)
T d1w6sa_ 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFY------GTLDGYLKARDSDTGDLLWKFKIPS 514 (596)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE------ECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CcccCcccCCCcceEEEEeCCCCceecccCCCCCCccceeEecCCEEEE------ECCCCeEEEEECCCCcEeeEEECCC
Confidence 0 0125788889999988877665544433222333444443 4789999999999999998875432
Q ss_pred Cc-eeEeEEcCCCC-EEEE
Q 019847 282 SR-ILDLSQSPDGL-TVAT 298 (335)
Q Consensus 282 ~~-i~~~~~~~~~~-~l~~ 298 (335)
.. -.-+.+..||+ |++.
T Consensus 515 ~~~a~P~tY~~dGkQYvav 533 (596)
T d1w6sa_ 515 GAIGYPMTYTHKGTQYVAI 533 (596)
T ss_dssp CCCSCCEEEEETTEEEEEE
T ss_pred CcccCCeEEEECCEEEEEE
Confidence 21 11244555774 4543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.44 E-value=0.026 Score=47.87 Aligned_cols=287 Identities=10% Similarity=0.030 Sum_probs=153.7
Q ss_pred CceEEEe-cCCeEEEEEe-cCCceeeEEeecCCC---------CCceEEEEcCC----CCEEEEEECCCcEEEEeCCCce
Q 019847 27 NNVLAVA-LGPVLFLWKW-ENGKVKKLLQVPGED---------DYPTSVSWSHD----AKTLAVGYMDSKLQLWDAETSK 91 (335)
Q Consensus 27 ~~~~~~~-~~~~i~vw~~-~~~~~~~~~~~~~~~---------~~v~~~~~~~~----~~~l~~~~~dg~i~iw~~~~~~ 91 (335)
+.+++++ .++.+...|. ++|+.+-.+...... ..-+.+++.++ +.+++.++.|+.|.-.|.++|+
T Consensus 63 g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~ 142 (596)
T d1w6sa_ 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE 142 (596)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred CEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCc
Confidence 3444444 3577888886 578765544321110 01134555442 3478889999999999999999
Q ss_pred eEeeeccccccee-EeeecC-CCCCEEEEeeC------CCcEEEEecccCCeeeEEeecC--------------------
Q 019847 92 LVRNLEGHHRRVA-TSSWNH-WNGHILTSGSK------DKSIINHDVRVSNNVTSCIKAH-------------------- 143 (335)
Q Consensus 92 ~~~~~~~~~~~v~-~~~~~~-~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~-------------------- 143 (335)
.+..+........ .+.-.| -.++.++.+.. .|.|+-+|.++++.+-+.....
T Consensus 143 ~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~ 222 (596)
T d1w6sa_ 143 TVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQ 222 (596)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred eeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccc
Confidence 9887753211110 111011 02344555543 4889999999888765432110
Q ss_pred ----------------CCC-EEEEEeecCCCEEEEEeCC----------------CeEEEEEccCCCcccceeeccCCC-
Q 019847 144 ----------------SGE-VCGLKWSNEGNLLASGGDD----------------NVVRIWERSKMSSSKSLHRFTDHC- 189 (335)
Q Consensus 144 ----------------~~~-i~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~- 189 (335)
... -..+++.+...++..+..+ ..|.-.|+++++..-..+. ..|.
T Consensus 223 ~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~-~~~D~ 301 (596)
T d1w6sa_ 223 KGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK-TPHDE 301 (596)
T ss_dssp TTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES-STTCS
T ss_pred cccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccc-eeccc
Confidence 011 1234555666666555432 2355667666432211111 1111
Q ss_pred ------CCeeEEEe-cCCCC--cEEEEecCCCCCeEEEEECCCCceEEEeecCC--------------cE----------
Q 019847 190 ------GGVKALAW-SPHQV--NVLATGGGREDGCIKIWNVQKGTCIHGIDAKA--------------QI---------- 236 (335)
Q Consensus 190 ------~~v~~~~~-~~~~~--~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~--------------~~---------- 236 (335)
.....+.. ..+++ .+++... .+|.+.++|..+|+++...+... ++
T Consensus 302 Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~--k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~ 379 (596)
T d1w6sa_ 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPD--RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMD 379 (596)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTT
T ss_pred cCCccccceeeeeccccccccccceeccc--cccceeeecCCCCceeeeccccccccccccccccccccccCccccccCC
Confidence 11111221 23332 3455444 88999999999998875433110 00
Q ss_pred ----------------eEEEeCCCCceeeeeeee-------------------------eee--------cCCCeEEEEE
Q 019847 237 ----------------CGLEWNRHHKEILSGHGF-------------------------SAS--------GDGNKLCLWK 267 (335)
Q Consensus 237 ----------------~~~~~~~~~~~~~~~~~~-------------------------~~~--------~~~~~i~i~d 267 (335)
...+++|+...+.....- ... ..-|.+.-||
T Consensus 380 ~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D 459 (596)
T d1w6sa_ 380 HLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYN 459 (596)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEEC
T ss_pred ccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccccCcccCcccCCCcceEEEEe
Confidence 123555555544432110 000 0126788889
Q ss_pred CCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 019847 268 YPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADETIRFWEAFGPSGDE 317 (335)
Q Consensus 268 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 317 (335)
+.+++.+-+.... .+..+-.++..+.+++.|+.||.++.+|..+++..-
T Consensus 460 ~~TG~~~W~~~~~-~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW 508 (596)
T d1w6sa_ 460 AITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW 508 (596)
T ss_dssp TTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCCceecccCCC-CCCccceeEecCCEEEEECCCCeEEEEECCCCcEee
Confidence 8888876554321 122222233456688889999999999999887654
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.23 E-value=0.019 Score=44.81 Aligned_cols=182 Identities=8% Similarity=0.017 Sum_probs=102.7
Q ss_pred ceEEEEcCCCCEEEEEEC------------CCcEEEEeCCCceeE-eeecccc-------cceeEeee--cCCCCC-EEE
Q 019847 61 PTSVSWSHDAKTLAVGYM------------DSKLQLWDAETSKLV-RNLEGHH-------RRVATSSW--NHWNGH-ILT 117 (335)
Q Consensus 61 v~~~~~~~~~~~l~~~~~------------dg~i~iw~~~~~~~~-~~~~~~~-------~~v~~~~~--~~~~~~-~l~ 117 (335)
.-.++..|+|..+++++. .|.|.++|+.+.+.. ..+.... -....+.. .+ ++. +|+
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~-dg~~~L~ 115 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD-DNTVYLL 115 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECT-TCCEEEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcC-CCcEEEE
Confidence 346777777766655431 489999998765321 1221111 12233332 22 333 344
Q ss_pred Eee---CCCcEEEEecccCCeeeE---Ee-ecCCCCEEEEEeecCCCEEEEEeC-----------------CCeEEEEEc
Q 019847 118 SGS---KDKSIINHDVRVSNNVTS---CI-KAHSGEVCGLKWSNEGNLLASGGD-----------------DNVVRIWER 173 (335)
Q Consensus 118 ~~~---~dg~i~~~d~~~~~~~~~---~~-~~~~~~i~~~~~~~~~~~l~~~~~-----------------dg~i~iwd~ 173 (335)
+.. ...+|-+|++........ .. .......+.+++..++.+++|-.. -+.+.-||.
T Consensus 116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~ 195 (340)
T d1v04a_ 116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 195 (340)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence 432 345788888765443221 11 122345788998888888887321 123444442
Q ss_pred cCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCce---EEEeecCCcEeEEEeCCC-Cceee
Q 019847 174 SKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTC---IHGIDAKAQICGLEWNRH-HKEIL 249 (335)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~ 249 (335)
. . .......-...+.++++|+++.++++.. ..+.|+.|++..... ...+..+...-.+.+.+. |...+
T Consensus 196 ~---~---~~~~~~~l~~pNGI~~s~d~~~lyVa~t--~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwv 267 (340)
T d1v04a_ 196 N---D---VRVVAEGFDFANGINISPDGKYVYIAEL--LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWV 267 (340)
T ss_dssp S---C---EEEEEEEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEE
T ss_pred C---c---eEEEcCCCCccceeEECCCCCEEEEEeC--CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEE
Confidence 2 1 1221122345789999999998888877 789999999875432 233345566777888764 44444
Q ss_pred ee
Q 019847 250 SG 251 (335)
Q Consensus 250 ~~ 251 (335)
.+
T Consensus 268 a~ 269 (340)
T d1v04a_ 268 GC 269 (340)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.18 E-value=0.026 Score=42.48 Aligned_cols=197 Identities=18% Similarity=0.203 Sum_probs=122.9
Q ss_pred cC-CceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEEeCCCc-eeEeeecccc--
Q 019847 25 GR-NNVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLWDAETS-KLVRNLEGHH-- 100 (335)
Q Consensus 25 ~~-~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~-- 100 (335)
+| ..+++.-....+.++|+++.+..+...++ ..|.--.|-.+. .|+..+ +..|+-|+++.. ++.+.+..|.
T Consensus 71 hP~~~IiALrag~~LQiFnletK~klks~~~~---e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L 145 (327)
T d1utca2 71 NPASKVIALKAGKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL 145 (327)
T ss_dssp CSSSSEEEEEETTEEEEEETTTTEEEEEEECS---SCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG
T ss_pred CCCCcEEEEecCCeEEEEehhHhhhhceEEcC---CCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhcccc
Confidence 44 35666666889999999999887777764 457777776544 565554 457999999542 4555565544
Q ss_pred --cceeEeeecCCCCCEEEEee-------CCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCC---CEEEEEe---CC
Q 019847 101 --RRVATSSWNHWNGHILTSGS-------KDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEG---NLLASGG---DD 165 (335)
Q Consensus 101 --~~v~~~~~~~~~~~~l~~~~-------~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~---~d 165 (335)
..|..-..++ +.+.++..+ -.|.+.+|..+. ...+.+.+|-+....+.+..+. ++++.+. ..
T Consensus 146 ~~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~mQLYS~er--~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~ 222 (327)
T d1utca2 146 AGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 222 (327)
T ss_dssp TTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTT--TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred cCceEEEEEECC-CCCEEEEEeEecCCCceeEEEEEEEecc--CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCC
Confidence 3566666677 666655432 236788999863 3456677776555554443211 2333332 23
Q ss_pred CeEEEEEccCCCcc-cc-----eeecc---CCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEEeec
Q 019847 166 NVVRIWERSKMSSS-KS-----LHRFT---DHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHGIDA 232 (335)
Q Consensus 166 g~i~iwd~~~~~~~-~~-----~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~ 232 (335)
+++.+-++...... .. ...+. ...+-..++..++.-..++... .-|.+++||++++.++..-+-
T Consensus 223 ~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviT---K~G~i~lyDleTgt~i~~nRI 295 (327)
T d1utca2 223 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYMNRI 295 (327)
T ss_dssp EEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEE---TTSEEEEEETTTCCEEEEEEC
T ss_pred cEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEe---cCcEEEEEEcccccEEEEeec
Confidence 68888888764321 11 11111 1234456777777665555544 789999999999999876654
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.10 E-value=0.03 Score=43.69 Aligned_cols=172 Identities=10% Similarity=0.014 Sum_probs=91.6
Q ss_pred CCcEEEEecccCCeeeEEeecCC-------CCEEEEEe--ecCCC-EEEEEe---CCCeEEEEEccCCCc-ccceeeccC
Q 019847 122 DKSIINHDVRVSNNVTSCIKAHS-------GEVCGLKW--SNEGN-LLASGG---DDNVVRIWERSKMSS-SKSLHRFTD 187 (335)
Q Consensus 122 dg~i~~~d~~~~~~~~~~~~~~~-------~~i~~~~~--~~~~~-~l~~~~---~dg~i~iwd~~~~~~-~~~~~~~~~ 187 (335)
.|.|.++|+.........+.... -....+.. .++++ +|++.. ...+|.+|++..... ...+.....
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~ 146 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 146 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence 48899999876544332222111 12344443 33555 344432 356788888765332 111222221
Q ss_pred -CCCCeeEEEecCCCCcEEEEe-cCCC------------CCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeee
Q 019847 188 -HCGGVKALAWSPHQVNVLATG-GGRE------------DGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHG 253 (335)
Q Consensus 188 -~~~~v~~~~~~~~~~~~~~~~-~g~~------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (335)
.....+.+++..++. ++++- .... -+...+|....++.......-...+.++++|++++++++.
T Consensus 147 ~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~- 224 (340)
T d1v04a_ 147 KLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAE- 224 (340)
T ss_dssp TTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEE-
T ss_pred ccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEe-
Confidence 223468888888885 55542 1001 1223344434444433334446688999999999887664
Q ss_pred eeeecCCCeEEEEECCCCceeecc--cCCCCceeEeEEcC-CCCEEEEE
Q 019847 254 FSASGDGNKLCLWKYPNMTKVGEL--QSSNSRILDLSQSP-DGLTVATA 299 (335)
Q Consensus 254 ~~~~~~~~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~-~~~~l~~~ 299 (335)
+..+.|++|++.....+... ..-.+..-.+.+.+ +|.+.+++
T Consensus 225 ----t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 225 ----LLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp ----GGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred ----CCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 55789999998754332221 11233455677765 44444443
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.98 E-value=0.08 Score=44.64 Aligned_cols=81 Identities=6% Similarity=0.068 Sum_probs=54.4
Q ss_pred CCeEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCc-eeEeEEcC
Q 019847 213 DGCIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSR-ILDLSQSP 291 (335)
Q Consensus 213 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~ 291 (335)
.|.|.-+|+.+++.+-..+.+.+...-..+..+..++. ++.|+.++-+|.++++.+-+++-.... -.-+.+..
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~------Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~ 538 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFT------GTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQ 538 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEE------ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEE------eCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEE
Confidence 36788899999999888876665543223334444444 477999999999999999887643221 12256667
Q ss_pred CCC-EEEEE
Q 019847 292 DGL-TVATA 299 (335)
Q Consensus 292 ~~~-~l~~~ 299 (335)
+|+ |++..
T Consensus 539 ~G~qYv~i~ 547 (582)
T d1flga_ 539 DGEQYLGVT 547 (582)
T ss_dssp TTEEEEEEE
T ss_pred CCEEEEEEE
Confidence 884 55443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.89 E-value=0.061 Score=41.84 Aligned_cols=188 Identities=14% Similarity=0.216 Sum_probs=110.2
Q ss_pred CCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeec------CCCEEEEEe-CC---CeEEEEEccCCCcccc
Q 019847 112 NGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSN------EGNLLASGG-DD---NVVRIWERSKMSSSKS 181 (335)
Q Consensus 112 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~l~~~~-~d---g~i~iwd~~~~~~~~~ 181 (335)
...+++.....+-|.+||+. ++.+.. + ..+.++.+..-. +..-+++++ .+ .+|.+|.+.... ..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~-~--~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~--~~ 112 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHS-Y--HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN--GT 112 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEE-C--CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTT--TE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEe-c--ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcc--cc
Confidence 45677777777779999996 554333 2 245666665432 222345554 22 368888876321 12
Q ss_pred eeeccC-------CCCCeeEEEe--cCCCCc-EEEEecCCCCCeEEEEECC---CC----ceEEEeecCCcEeEEEeCCC
Q 019847 182 LHRFTD-------HCGGVKALAW--SPHQVN-VLATGGGREDGCIKIWNVQ---KG----TCIHGIDAKAQICGLEWNRH 244 (335)
Q Consensus 182 ~~~~~~-------~~~~v~~~~~--~~~~~~-~~~~~~g~~d~~i~i~d~~---~~----~~~~~~~~~~~~~~~~~~~~ 244 (335)
+..+.. ....+..+|+ +|.... .+.+.. .+|.+..|.+. ++ +.++.+.....+..+.++..
T Consensus 113 l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~--k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde 190 (353)
T d1h6la_ 113 LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG--KEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDE 190 (353)
T ss_dssp EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEEC--SSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETT
T ss_pred cccccccccccccccCcceEEEEEecCCCCeEEEEEEc--CCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCC
Confidence 222211 1223666776 665443 344443 78998888763 23 45667777889999999999
Q ss_pred CceeeeeeeeeeecCCCeEEEEECCC-----CceeecccC--CCCceeEeEEcC--C--CCEEEEEeCCCcEEEEecCCC
Q 019847 245 HKEILSGHGFSASGDGNKLCLWKYPN-----MTKVGELQS--SNSRILDLSQSP--D--GLTVATAGADETIRFWEAFGP 313 (335)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~i~d~~~-----~~~~~~~~~--~~~~i~~~~~~~--~--~~~l~~~~~dg~v~iw~~~~~ 313 (335)
...|+.+ .++..+..++... ...+....+ ....+..|+.-. + |-+|+|.-.+++..+||...+
T Consensus 191 ~~~Lyis------EE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 191 YGSLYIA------EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp TTEEEEE------ETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred CCcEEEe------cCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9998887 5566666666542 222222222 344567776532 2 334444446788999998764
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.54 E-value=0.14 Score=41.24 Aligned_cols=247 Identities=11% Similarity=0.085 Sum_probs=128.2
Q ss_pred ccceeeeecCC-ceEEEe--cCC----eEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEECC----------
Q 019847 17 YYSKVIDWGRN-NVLAVA--LGP----VLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMD---------- 79 (335)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~--~~~----~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------- 79 (335)
+....++++++ ++++.+ .+| .++++|+.+++..... +.. .....++|.+|++.|+....+
T Consensus 125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~ 201 (430)
T d1qfma1 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (430)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred ceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-ccc--ccccceEEcCCCCEEEEEEeccccCcccccc
Confidence 34445566664 444443 233 7999999999875532 221 123568999999988765432
Q ss_pred ------CcEEEEeCCCcee--Eeeecccc--cceeEeeecCCCCCEEEEeeC---CCc--EEEEecccCCe-------ee
Q 019847 80 ------SKLQLWDAETSKL--VRNLEGHH--RRVATSSWNHWNGHILTSGSK---DKS--IINHDVRVSNN-------VT 137 (335)
Q Consensus 80 ------g~i~iw~~~~~~~--~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~---dg~--i~~~d~~~~~~-------~~ 137 (335)
..|..+.+.+... ...+.... ..+..+..++ ++++++.... +.. +.+.|+..... ..
T Consensus 202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 280 (430)
T d1qfma1 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (430)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred cccCCcceEEEEECCCCccccccccccccCCceEEeeeccC-CcceeeEEeeccCCccEEEEEeeCCCccccccccccee
Confidence 2577777766422 22233222 3355566677 7777654322 333 34445443221 11
Q ss_pred EEeecCCCCEEEEEeecCCCEEEEEeC---CCeEEEEEccCCCcccceeecc-CCCCCeeEEEecCCCCcEEEEecCCCC
Q 019847 138 SCIKAHSGEVCGLKWSNEGNLLASGGD---DNVVRIWERSKMSSSKSLHRFT-DHCGGVKALAWSPHQVNVLATGGGRED 213 (335)
Q Consensus 138 ~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~g~~d 213 (335)
...........-+. +.++.+++.... ++.|...++..+... ....+. .+...+..-.+...+..+++... .+
T Consensus 281 ~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~-~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~--~~ 356 (430)
T d1qfma1 281 KLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYL--HD 356 (430)
T ss_dssp EEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEE--ET
T ss_pred EeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccc-cceEEecccCcceeeeEEEEECCEEEEEEE--cC
Confidence 22222233333222 223334443332 366777777654322 222232 34444544344434445666543 34
Q ss_pred --CeEEEEECCCCceEEEeec-CCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCce
Q 019847 214 --GCIKIWNVQKGTCIHGIDA-KAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTK 273 (335)
Q Consensus 214 --~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 273 (335)
..|+++++.++........ ...+..+...++...+... +.+-..-.++.-+|+.+++.
T Consensus 357 ~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~--~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQ--FTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEE--EECSSCCCEEEEEETTSSSC
T ss_pred CEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEE--EcCCCCCCeEEEEECCCCCc
Confidence 4688999988876544332 2345555555555544432 22224457888888887753
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.30 E-value=0.25 Score=41.52 Aligned_cols=69 Identities=16% Similarity=0.093 Sum_probs=47.3
Q ss_pred CCceEEEecCCeEEEEEecCCceeeEEeecCCC---C---Cc-eEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeee
Q 019847 26 RNNVLAVALGPVLFLWKWENGKVKKLLQVPGED---D---YP-TSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNL 96 (335)
Q Consensus 26 ~~~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~---~---~v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 96 (335)
++.+++++.++.|.-.|.++|+.+-.+...... . .+ ..+++ .+..++.++.++.+.-.|.++|+.+...
T Consensus 68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~--~~~~i~~~t~~~~l~alda~tG~~~W~~ 143 (582)
T d1flga_ 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE--eCCceEEecCCCeEEEecccccceeeee
Confidence 457888888999999999999986554322100 0 00 12223 2456888899999999999999887543
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.27 E-value=0.17 Score=39.29 Aligned_cols=197 Identities=17% Similarity=0.217 Sum_probs=111.0
Q ss_pred CCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecC-----CCCCEEEEee-CC---CcEEEEecccCCeeeEE
Q 019847 69 DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNH-----WNGHILTSGS-KD---KSIINHDVRVSNNVTSC 139 (335)
Q Consensus 69 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~-~d---g~i~~~d~~~~~~~~~~ 139 (335)
+..+++....++-|++||++ |+.+..+.. +.+..+.... .....++.++ ++ .+|.+|.+.........
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 45566666677679999985 777777652 3444444321 0222344444 32 36778887643322322
Q ss_pred eec-------CCCCEEEEEe--ecC-CC-EEEEEeCCCeEEEEEccCCCc----ccceeeccCCCCCeeEEEecCCCCcE
Q 019847 140 IKA-------HSGEVCGLKW--SNE-GN-LLASGGDDNVVRIWERSKMSS----SKSLHRFTDHCGGVKALAWSPHQVNV 204 (335)
Q Consensus 140 ~~~-------~~~~i~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~ 204 (335)
+.. ....+..+|+ ++. +. ++++...+|.+..|.+..... ...++.+. ....+..+.+.+....|
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSL 194 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcE
Confidence 221 1224666776 553 44 556677789999888753322 23344443 34678899999988777
Q ss_pred EEEecCCCCCeEEEEECCC-----CceEEEeec---CCcEeEEEeCC--CCc-eeeeeeeeeeecCCCeEEEEECCCC-c
Q 019847 205 LATGGGREDGCIKIWNVQK-----GTCIHGIDA---KAQICGLEWNR--HHK-EILSGHGFSASGDGNKLCLWKYPNM-T 272 (335)
Q Consensus 205 ~~~~~g~~d~~i~i~d~~~-----~~~~~~~~~---~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~i~i~d~~~~-~ 272 (335)
+++- ++..+..++... +..+..... ...+..++.-. ++. +++++ +..+++..+||.... +
T Consensus 195 yisE---E~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivS-----sQG~n~f~vydr~~~~~ 266 (353)
T d1h6la_ 195 YIAE---EDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLAS-----SQGNSSYAIYERQGQNK 266 (353)
T ss_dssp EEEE---TTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEE-----EGGGTEEEEEESSTTCC
T ss_pred EEec---CccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEE-----cCCCCeEEEEecCCCcc
Confidence 7764 566666666542 122222221 23455555432 222 44332 356899999998763 5
Q ss_pred eeecc
Q 019847 273 KVGEL 277 (335)
Q Consensus 273 ~~~~~ 277 (335)
.+..+
T Consensus 267 ~~g~F 271 (353)
T d1h6la_ 267 YVADF 271 (353)
T ss_dssp EEEEE
T ss_pred ccceE
Confidence 55444
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.18 E-value=0.2 Score=39.32 Aligned_cols=177 Identities=7% Similarity=0.032 Sum_probs=103.0
Q ss_pred cceeEeeecCCCCCEEEEeeCCCcEEEEeccc----------CCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEE
Q 019847 101 RRVATSSWNHWNGHILTSGSKDKSIINHDVRV----------SNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRI 170 (335)
Q Consensus 101 ~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 170 (335)
....-++.++ ...++++|+.++ +.+..... ....... ..-..|..++|+.+ .|+.. .++.+..
T Consensus 37 ~~~~LLAVsn-~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~--~~ip~v~~vafs~d--~l~v~-~~~~l~~ 109 (381)
T d1xipa_ 37 ASLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE--KEIPDVIFVCFHGD--QVLVS-TRNALYS 109 (381)
T ss_dssp SCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE--EECTTEEEEEEETT--EEEEE-ESSEEEE
T ss_pred cccceEEEeC-CCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceec--cCCCCeEEEEeeCC--EEEEE-eCCCEEE
Confidence 3455677777 667777777775 55665321 1111111 11236888999755 45554 4667888
Q ss_pred EEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEEEECCCCceEEE------eecCCcEeEEEeCCC
Q 019847 171 WERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKIWNVQKGTCIHG------IDAKAQICGLEWNRH 244 (335)
Q Consensus 171 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~------~~~~~~~~~~~~~~~ 244 (335)
++...... ......-..++..+.++|.. +++.. .++.+.++++.+++.... +.......+++|++.
T Consensus 110 ~~~~~l~~---~~~~~~~~~~~~~~~~~p~~--~~l~~---~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~k 181 (381)
T d1xipa_ 110 LDLEELSE---FRTVTSFEKPVFQLKNVNNT--LVILN---SVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDR 181 (381)
T ss_dssp EESSSTTC---EEEEEECSSCEEEEEECSSE--EEEEE---TTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTS
T ss_pred EEeecccc---ccccccccccccceecCCce--eEEEe---cCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCC
Confidence 88766433 22222335668889998864 44444 589999999998864332 223466888888888
Q ss_pred CceeeeeeeeeeecCCCeEEEE-ECCCCceeecccCCCCceeEeEEcCCCCEEEEE
Q 019847 245 HKEILSGHGFSASGDGNKLCLW-KYPNMTKVGELQSSNSRILDLSQSPDGLTVATA 299 (335)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~i~-d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 299 (335)
|+.++++. ++...+. ++.....+.........+.+|.|-.+..++++-
T Consensus 182 gkq~v~~~-------g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 182 SFQSFAWR-------NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp CEEEEEEE-------TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred cEEEEEeC-------CCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 88887762 1222211 222222111111233467888888777666654
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.05 E-value=0.18 Score=37.66 Aligned_cols=53 Identities=11% Similarity=-0.022 Sum_probs=28.4
Q ss_pred CeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEEEEeCCCc-----EEEEecCCC
Q 019847 261 NKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVATAGADET-----IRFWEAFGP 313 (335)
Q Consensus 261 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----v~iw~~~~~ 313 (335)
.....+|..+.+....-.........-+...++++++.|+.++. +.+||+...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 211 NSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred cceeeeeecceeeecccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCC
Confidence 45677887765543322211112211222236778888876543 678888764
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.65 E-value=0.35 Score=37.88 Aligned_cols=174 Identities=11% Similarity=-0.010 Sum_probs=99.6
Q ss_pred cceeeeecCC-ceEEEecCCeEEEEEecC-----------CceeeEEeecCCCCCceEEEEcCCCCEEEEEECCCcEEEE
Q 019847 18 YSKVIDWGRN-NVLAVALGPVLFLWKWEN-----------GKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYMDSKLQLW 85 (335)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~i~vw~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (335)
..+.++.++. .+++++....+.|-..+. ......... ..|..++|+.+ .|++.. ++.+..+
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs~d--~l~v~~-~~~l~~~ 110 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFHGD--QVLVST-RNALYSL 110 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEETT--EEEEEE-SSEEEEE
T ss_pred ccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEeeCC--EEEEEe-CCCEEEE
Confidence 3455777763 466666566788877431 122222222 25888999744 465554 5678888
Q ss_pred eCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEE----eecCCCCEEEEEeecCCCEEEE
Q 019847 86 DAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSC----IKAHSGEVCGLKWSNEGNLLAS 161 (335)
Q Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~ 161 (335)
+...-........-..++..+.++| ..++....+|.+.++++......... -..-.+.+.+++|++.+..+++
T Consensus 111 ~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~ 187 (381)
T d1xipa_ 111 DLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFA 187 (381)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEE
T ss_pred EeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEE
Confidence 8766444444333456778888765 46677778899999999866531110 0112356788888888877777
Q ss_pred EeCCCeEEEE-EccCCCcccceeeccCCCCCeeEEEecCCCCcEE
Q 019847 162 GGDDNVVRIW-ERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVL 205 (335)
Q Consensus 162 ~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 205 (335)
+..++ ..+- ++.. ...+.........+.++.|-.+...++
T Consensus 188 ~~g~~-~q~k~~i~~---~~~~~~p~~~~~~v~sI~WL~~~~F~v 228 (381)
T d1xipa_ 188 WRNGE-MEKQFEFSL---PSELEELPVEEYSPLSVTILSPQDFLA 228 (381)
T ss_dssp EETTE-EEEEEEECC---CHHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred eCCCc-eeeccCCCC---ccccCCCcCCCcceeEEEEecCceEEE
Confidence 64332 2221 2211 111211122345688999987764333
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.70 E-value=0.74 Score=32.48 Aligned_cols=220 Identities=11% Similarity=0.168 Sum_probs=113.4
Q ss_pred CCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCC-CCEEEEee-----CCCcEEEEecccCCeeeEEeec
Q 019847 69 DAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWN-GHILTSGS-----KDKSIINHDVRVSNNVTSCIKA 142 (335)
Q Consensus 69 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~-----~dg~i~~~d~~~~~~~~~~~~~ 142 (335)
+.+.++++...|.+.++-+..++.++.-+ .+|.....-... +.+.++-. .-..+.+-++....+..+....
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp 101 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV 101 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence 44578888889999999888777665433 333332221101 11222211 1223555555433332222112
Q ss_pred CCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCC-------CCCeeEEEe-cCCCCcEEEEecCCCCC
Q 019847 143 HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDH-------CGGVKALAW-SPHQVNVLATGGGREDG 214 (335)
Q Consensus 143 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~v~~~~~-~~~~~~~~~~~~g~~d~ 214 (335)
..-.|.+++.. +.+...+|+......+|-++.+.. +.+..+.+. ...|..+.+ .+....++.+.- ..|
T Consensus 102 k~vRI~S~~yd-dk~vvF~Gased~~~LYviegGkl-rkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl--~SG 177 (313)
T d2hu7a1 102 KPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGL-RELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNL--SSG 177 (313)
T ss_dssp CSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEE-EEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEET--TTE
T ss_pred ceEEEEEeeec-CceEEEecccCCceEEEEEeCCce-eeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEec--ccC
Confidence 22446666654 456778888877888888775542 333333221 122333332 222222333321 256
Q ss_pred eEEEEECCCCceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeec-ccC------CCCceeEe
Q 019847 215 CIKIWNVQKGTCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGE-LQS------SNSRILDL 287 (335)
Q Consensus 215 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~-~~~------~~~~i~~~ 287 (335)
.+++++...| .++.....+..+. +++ +-..++.--| -+|.++++.... +.. ..-.|+-+
T Consensus 178 ~lri~tpkeG----------S~~~ay~~~gnKV-~sd--yEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~ 243 (313)
T d2hu7a1 178 GLRVFDSGEG----------SFSSASISPGMKV-TAG--LETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITWL 243 (313)
T ss_dssp EEEEECCSSE----------EEEEEEECTTSCE-EEE--EEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEEE
T ss_pred CEEEecCCCC----------cccceeEccCcee-eec--cCCCCceEEE-EEecccCceeeeecCcccceeecceEEEee
Confidence 6666665443 3444444454443 333 2333434444 457776543221 111 12346667
Q ss_pred EEcCCCCEEEEEeCCCcEEEEe
Q 019847 288 SQSPDGLTVATAGADETIRFWE 309 (335)
Q Consensus 288 ~~~~~~~~l~~~~~dg~v~iw~ 309 (335)
-+.|++++++.+-.||.-++|.
T Consensus 244 ~Y~Pdd~L~iiakrdG~s~lF~ 265 (313)
T d2hu7a1 244 GYLPDGRLAVVARREGRSAVFI 265 (313)
T ss_dssp EECTTSCEEEEEEETTEEEEEE
T ss_pred eeCCCCcEEEEEecCCchheee
Confidence 7999999989999999999985
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.27 E-value=2.2 Score=34.15 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=38.8
Q ss_pred CCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeec------cCCCCCeeEEEecCC
Q 019847 143 HSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRF------TDHCGGVKALAWSPH 200 (335)
Q Consensus 143 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~v~~~~~~~~ 200 (335)
.-...++|+|.|++++|++--..|.|++++..+... ..+..+ ..-......++++|+
T Consensus 25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~-~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcE-eecccCCccccccCCCCceeeEEeCCC
Confidence 345678999999999887764579999998665432 222222 122356788999996
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.11 E-value=1.6 Score=32.13 Aligned_cols=56 Identities=18% Similarity=0.103 Sum_probs=33.0
Q ss_pred CeEEEEEecCCceeeEEeecCCCCCceEEEEcCCCCEEEEEEC---------CCcEEEEeCCCceeE
Q 019847 36 PVLFLWKWENGKVKKLLQVPGEDDYPTSVSWSHDAKTLAVGYM---------DSKLQLWDAETSKLV 93 (335)
Q Consensus 36 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~iw~~~~~~~~ 93 (335)
..+.+||..+++......++.....-..+.+ +++.++.|+. -..+.+||..+.+..
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~ 83 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 83 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred ceEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhccccccccc
Confidence 3688999999887665444432222222222 5666666652 235778888766543
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=88.07 E-value=3.1 Score=29.25 Aligned_cols=219 Identities=12% Similarity=0.099 Sum_probs=116.7
Q ss_pred ceEEEecCCeEEEEEecCCceeeEEeecCCCCCceEEEE-cCCCCEEEEEE------CCCcEEEEeCCCceeEeeecccc
Q 019847 28 NVLAVALGPVLFLWKWENGKVKKLLQVPGEDDYPTSVSW-SHDAKTLAVGY------MDSKLQLWDAETSKLVRNLEGHH 100 (335)
Q Consensus 28 ~~~~~~~~~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~~ 100 (335)
-++.+...|.+.++-+..++..++. ..+|....- .+.-.++...- .-..|.+-++.......++....
T Consensus 28 ll~~~~seG~vni~~l~g~~~vkLt-----kePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk 102 (313)
T d2hu7a1 28 LLVVGFSEGSVNAYLYDGGETVKLN-----REPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK 102 (313)
T ss_dssp EEEEEEETTEEEEEEESSSSCEECC-----SSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSC
T ss_pred EEEEEeccceEEEEEEeCCEEEEEe-----cccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCc
Confidence 3455558999999999888865433 234433221 11222333321 12345555555322233343333
Q ss_pred -cceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEee-cCCCCEEEE--------Ee-ecCCCEEEEEeC-CCeE
Q 019847 101 -RRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIK-AHSGEVCGL--------KW-SNEGNLLASGGD-DNVV 168 (335)
Q Consensus 101 -~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~i~~~--------~~-~~~~~~l~~~~~-dg~i 168 (335)
-.|.++++. +.+..++|+......+|-++.++ +.+... ..-+-|+.+ .+ .+..+-+.++.. .|.+
T Consensus 103 ~vRI~S~~yd--dk~vvF~Gased~~~LYviegGk-lrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~l 179 (313)
T d2hu7a1 103 PMRILSGVDT--GEAVVFTGATEDRVALYALDGGG-LRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL 179 (313)
T ss_dssp SBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTE-EEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEE
T ss_pred eEEEEEeeec--CceEEEecccCCceEEEEEeCCc-eeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCE
Confidence 567777775 78889999999999999988554 222211 111223332 22 222223444443 5555
Q ss_pred EEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEec--CCCCCeEEEEECCCCceEEE-eec-------CCcEeE
Q 019847 169 RIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGG--GREDGCIKIWNVQKGTCIHG-IDA-------KAQICG 238 (335)
Q Consensus 169 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--g~~d~~i~i~d~~~~~~~~~-~~~-------~~~~~~ 238 (335)
++++ ...+.++.....+..+ + +++- ..+...| -+|+++++.... ++. ...|.-
T Consensus 180 ri~t--------------pkeGS~~~ay~~~gnK-V-~sdyEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~ 242 (313)
T d2hu7a1 180 RVFD--------------SGEGSFSSASISPGMK-V-TAGLETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITW 242 (313)
T ss_dssp EEEC--------------CSSEEEEEEEECTTSC-E-EEEEEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEE
T ss_pred EEec--------------CCCCcccceeEccCce-e-eeccCCCCceEEE-EEecccCceeeeecCcccceeecceEEEe
Confidence 5555 3345566666666553 3 3221 0022233 458776654321 111 234666
Q ss_pred EEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccC
Q 019847 239 LEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQS 279 (335)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 279 (335)
+-+.|+++.++.+ -.||.-++|. +++.+...++
T Consensus 243 ~~Y~Pdd~L~iia------krdG~s~lF~--nGk~in~p~G 275 (313)
T d2hu7a1 243 LGYLPDGRLAVVA------RREGRSAVFI--DGERVEAPQG 275 (313)
T ss_dssp EEECTTSCEEEEE------EETTEEEEEE--TTEEECCCSS
T ss_pred eeeCCCCcEEEEE------ecCCchheee--cceEecCCCC
Confidence 7799999986666 3489999987 5666554443
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=87.20 E-value=4.2 Score=29.73 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=36.6
Q ss_pred ccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeEEeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccC
Q 019847 100 HRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTSCIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSK 175 (335)
Q Consensus 100 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 175 (335)
...|..++-- ....+.-. ||.|..|-.....++-. .......+..++.- +...++ - .||.+..|....
T Consensus 25 ~~~i~~va~G---~~h~~al~-dG~v~~wG~N~~GQlG~-~~~~~~~v~~v~~G-~~~~~a-l-~dg~v~~wG~~~ 92 (273)
T d1jtdb_ 25 QSGVDAIAGG---YFHGLALK-GGKVLGWGANLNGQLTM-PAATQSGVDAIAAG-NYHSLA-L-KDGEVIAWGGNE 92 (273)
T ss_dssp SSSEEEEEEC---SSEEEEEE-TTEEEEEECCTTSTTSC-CGGGGSCCCEEEEC-SSEEEE-E-ETTEEEEEECCT
T ss_pred CCCcEEEEcc---CCEEEEEE-CCEEEEEeCCCCCceee-eecccccceEEecC-CCceee-e-eeeeeeccCCCc
Confidence 3457777663 33334344 89999998765544221 11223345555432 222233 2 489999998543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=83.12 E-value=9.5 Score=30.29 Aligned_cols=52 Identities=10% Similarity=0.210 Sum_probs=37.7
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEe--eec------ccccceeEeeecC
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVR--NLE------GHHRRVATSSWNH 110 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~------~~~~~v~~~~~~~ 110 (335)
...++|+|.|+++++++--..|.|++++..+++... .+. ........++++|
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~P 86 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP 86 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCC
Confidence 457899999999988877557999999987765432 211 1235678899987
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=80.25 E-value=8.6 Score=27.91 Aligned_cols=221 Identities=14% Similarity=0.078 Sum_probs=104.5
Q ss_pred CCceEEEEcCCCCEEEEEECCCcEEEEeCCCceeEeeecccccceeEeeecCCCCCEEEEeeCCCcEEEEecccCCeeeE
Q 019847 59 DYPTSVSWSHDAKTLAVGYMDSKLQLWDAETSKLVRNLEGHHRRVATSSWNHWNGHILTSGSKDKSIINHDVRVSNNVTS 138 (335)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 138 (335)
..|..++-- ....++-. ||.|..|-......+..-......+..+..- ....++ -.|+.+..|......+...
T Consensus 26 ~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G--~~~~~a--l~dg~v~~wG~~~~gq~~~ 98 (273)
T d1jtdb_ 26 SGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG--NYHSLA--LKDGEVIAWGGNEDGQTTV 98 (273)
T ss_dssp SSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEEC--SSEEEE--EETTEEEEEECCTTSTTCC
T ss_pred CCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecC--CCceee--eeeeeeeccCCCcceeecc
Confidence 456777652 22333334 8999999765443322222233455555542 222333 2489999998654332111
Q ss_pred EeecCCCCEEEEEeecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCCCCCeeEEEecCCCCcEEEEecCCCCCeEEE
Q 019847 139 CIKAHSGEVCGLKWSNEGNLLASGGDDNVVRIWERSKMSSSKSLHRFTDHCGGVKALAWSPHQVNVLATGGGREDGCIKI 218 (335)
Q Consensus 139 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~d~~i~i 218 (335)
.......+..++.... ..+. -.|+.+..|.-..... ... .......|..++-.. ...++. .++.++.
T Consensus 99 -~~~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~--~~~-~~~~~~~v~~~~~~~--~~~~~~----~~g~~~~ 165 (273)
T d1jtdb_ 99 -PAEARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQ--TTV-PAEAQSGVTALDGGV--YTALAV----KNGGVIA 165 (273)
T ss_dssp -CGGGGSSCCEEEEETT--EEEE-EETTEEEEEECCTTST--TSC-CGGGGSSEEEEEECS--SEEEEE----ETTEEEE
T ss_pred -ccccccceeEEeeecc--cccc-cccccceecccCCCCc--eee-eccCCceEEEEeccc--eeeeee----cccceeE
Confidence 1111233444443322 2222 2489999997443211 111 111123344444322 123332 4788888
Q ss_pred EECCCC-ceEEEeecCCcEeEEEeCCCCceeeeeeeeeeecCCCeEEEEECCCCceeecccCCCCceeEeEEcCCCCEEE
Q 019847 219 WNVQKG-TCIHGIDAKAQICGLEWNRHHKEILSGHGFSASGDGNKLCLWKYPNMTKVGELQSSNSRILDLSQSPDGLTVA 297 (335)
Q Consensus 219 ~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 297 (335)
|-.... +..........+..++..... .++ -.||.|+-|=....-++..-......|..|+-.... .++
T Consensus 166 ~G~~~~g~~~~~~~~~~~v~~Is~G~~h-~~~--------l~dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~~-~~~ 235 (273)
T d1jtdb_ 166 WGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLA--------LKDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLA 235 (273)
T ss_dssp EECCTTSTTSCCGGGSSSEEEEEECSSE-EEE--------EETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEE
T ss_pred eecccCCcccccccccCCccceecccee-eEE--------EecCcEEEcCCCCCCccCCCccCCCCcEEEEeCcce-EEE
Confidence 865432 221222234456665543221 111 127889988654432222211222346777654433 333
Q ss_pred EEeCCCcEEEEecC
Q 019847 298 TAGADETIRFWEAF 311 (335)
Q Consensus 298 ~~~~dg~v~iw~~~ 311 (335)
. .||.|..|=-.
T Consensus 236 l--~~g~v~~WG~~ 247 (273)
T d1jtdb_ 236 L--KNGKVIAWGSS 247 (273)
T ss_dssp E--ETTEEEEESTT
T ss_pred E--ECCEEEEECCC
Confidence 3 38999999543
|